Citrus Sinensis ID: 020988

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------32
Protein Sequence
MAIAAAAASSSSSLFPKYPCLSRNSPRLPQSLRFSSTIRAVTLQPAKSERNQTLELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFRYTKIIELDNDNLILHPRRGQVNNSGQEPGTAVFFERVVLETYS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccEEEcccccccccccccccHHHHHHcccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccccEEEEcccccHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHccccccccEEEEEccccccccccccccHHEEcccccccccHHHHHHHHHHHHcccEEEEEEEEcccccccccccccccccccccccccccccccEEEEEEEEEcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccHHcHHHcccccccccccccHHHHcHcccccccHHHHccccccccccHHcccccEcccccccccccccEEEEEEcccccccccccHHHHHHHccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccEEEEEccccHHHHHHHHHccccccEEEEEccHHHHHHHHHHHHHccccccccEEEEEccHHccccccccHHHHHHHHHHHccccHHHHHHHHHHHHccccEEEEEEEEEEEEEEcccccEEEccccccEcccccccccEEEEEEEEEEccc
Coil and Loop (DISEMBL)
MAIAAAAassssslfpkypclsrnsprlpqslrfsstiravtlqpaksernqtlelegdlfscpicyeplirkgptgltlgaiyrsgfkcrkcdktysskdnyldLTVIsglkdytevkpastelfrspfVSFLYergwrqnfnrsgfpgpdeEFKMAQEYFKSaqggllvdvscgsglfsrkfaksgtysgvvaldFSENMLRQCYDFIKQDNTILTSNLALVRAdvcrlpfasgfvDAVHAgaalhcwpspsnaasvfsSSYSLLSICYLLQFRYTKIieldndnlilhprrgqvnnsgqepgtaVFFERVVLETYS
Flexible Loop (DISEMBL)
MAIAAaaassssslfpkyPCLSRNSPRLPQSLRfsstiravtlqpaksernqtlelegdlFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKcdktysskdnyldLTVISGLKDYTevkpastelfrsPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFRYTKIIELDNDNLILHPRRGqvnnsgqepgtavFFERVVLETYS
Low Complexity Region (SEG)
MAIaaaaasssssLFPKYPCLSRNSPRLPQSLRFSSTIRAVTLQPAKSERNQTLELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWpspsnaasvfsssysllsICYLLQFRYTKIIELDNDNLILHPRRGQVNNSGQEPGTAVFFERVVLETYS
Disordered region (IsUnstruct)
*****************************************************LELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGF******FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFRYTKIIELDNDNLILHPR************TAVFFERVVL****
Disordered Region (DISOPRED)
***********************************************************LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVIS***********STELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFRYTKIIELDNDNLILHPRRGQVNNSGQEPGTAVFFERVVLE***
Disordered Region (DISEMBL)
*************LFPKYPCLSRNSPRLPQSLRFSSTIRAVTLQPAKSERNQTLELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFRYTKIIELDNDNLILHPRRGQVNNSGQEPGTAVFFERVVLETYS
Disordered Region (DISPRO)
***************PKY****RNSP*L*QS*RFS*TIRAVT**********TLELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFRYTKIIELDNDNLILHPRRGQVNNSGQEPGTAVFFERVVLETYS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAIAAAAASSSSSLFPKYPCLSRNSPRLPQSLRFSSTIRAVTLQPAKSERNQTLELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFRYTKIIELDNDNLILHPRRGQVNNSGQEPGTAVFFERVVLETYS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	319	2.2.26 [Sep-21-2011]
Q0WPT7	352	Uncharacterized methyltra	yes	no	0.802	0.727	0.636	4e-93
Q8LBV4	355	Uncharacterized methyltra	no	no	0.664	0.597	0.543	3e-62
B9DNV5	241	Demethylmenaquinone methy	yes	no	0.319	0.423	0.292	2e-05
O66128	246	Demethylmenaquinone methy	yes	no	0.401	0.520	0.254	5e-05
Q24W96	253	Demethylmenaquinone methy	yes	no	0.332	0.418	0.274	8e-05
Q6GGU0	241	Demethylmenaquinone methy	yes	no	0.257	0.340	0.329	0.0002
Q4L6H3	239	Demethylmenaquinone methy	yes	no	0.253	0.338	0.333	0.0002
Q2YY85	241	Demethylmenaquinone methy	yes	no	0.257	0.340	0.329	0.0002
P67063	241	Demethylmenaquinone methy	yes	no	0.257	0.340	0.329	0.0003
A8Z450	241	Demethylmenaquinone methy	yes	no	0.257	0.340	0.329	0.0003

>sp|Q0WPT7|Y2104_ARATH Uncharacterized methyltransferase At2g41040, chloroplastic OS=Arabidopsis thaliana GN=At2g41040 PE=1 SV=1

 Score =  341 bits (875), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 175/275 (63%), Positives = 208/275 (75%), Gaps = 19/275 (6%)

Query: 1   MAIAAAAASSSSSLFPKYPCLSRNSPRLPQS-----LRFSSTIR--------AVTLQPAK 47
           MA+AA  +SSS+      P L   S           LRFS++          A++    K
Sbjct: 1   MAMAALTSSSSAITLLNKPFLPNRSSFFSSDSQSPLLRFSASTSVRSRFPSAAISAVAPK 60

Query: 48  SE--RNQTLELEGD---LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDN 102
           S+  +N+T ++E +   +F+CP+CYEPL+RKGP+G+ L AIYRSGFKC +C+KTYSSKD 
Sbjct: 61  SDINKNETPKIEIEETQVFACPVCYEPLMRKGPSGINLQAIYRSGFKCGQCNKTYSSKDE 120

Query: 103 YLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYF 162
           YLDLTV + L DY EVKP +TELFRSP VSFLYERGWRQ F RSGFPGPDEEF+MA+EYF
Sbjct: 121 YLDLTVTADLDDYNEVKPITTELFRSPLVSFLYERGWRQAFKRSGFPGPDEEFRMAEEYF 180

Query: 163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTS-NL 221
           K A+GGLLVDVSCGSGLFSRKFA+SG YSGV+ALD+SENMLRQC +FIK DNT   S N+
Sbjct: 181 KEAEGGLLVDVSCGSGLFSRKFAQSGKYSGVIALDYSENMLRQCKEFIKNDNTFDNSTNI 240

Query: 222 ALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNA 256
           A+VRADV RLPF SG VDAVHAGAALHCWPSP+NA
Sbjct: 241 AVVRADVSRLPFPSGSVDAVHAGAALHCWPSPTNA 275

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q8LBV4|Y1814_ARATH Uncharacterized methyltransferase At1g78140, chloroplastic OS=Arabidopsis thaliana GN=At1g78140 PE=1 SV=1

 Score =  239 bits (609), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 118/217 (54%), Positives = 148/217 (68%), Gaps = 5/217 (2%)

Query: 47  KSERNQTLELEGDLFSCPICYEPLIR-KGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLD 105
           K ++N+    E  + +CPICY  L     P GL   A      +C  C ++YS  + +LD
Sbjct: 65  KKDKNRG---EKKILACPICYNSLAWISQPNGLIESAASGIQVQCNTCKRSYSGNETHLD 121

Query: 106 LTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSA 165
           L V SG K Y+E  P STELFR+P VSFLYERGWRQNF   GFPGP++EF+MA+ Y K  
Sbjct: 122 LAVASGSKRYSEPMPLSTELFRTPLVSFLYERGWRQNFIWGGFPGPEKEFEMAKAYLKPV 181

Query: 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFI-KQDNTILTSNLALV 224
            GG ++D SCGSG+FSR F +S  +S V+ALD+SENMLRQCY+ + K++N      L LV
Sbjct: 182 LGGNIIDASCGSGMFSRLFTRSDLFSLVIALDYSENMLRQCYELLNKEENFPNKEKLVLV 241

Query: 225 RADVCRLPFASGFVDAVHAGAALHCWPSPSNAASVFS 261
           RAD+ RLPF SG VDAVHAGAALHCWPSPS+A +  S
Sbjct: 242 RADIARLPFLSGSVDAVHAGAALHCWPSPSSAVAEIS 278

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|B9DNV5|UBIE_STACT Demethylmenaquinone methyltransferase OS=Staphylococcus carnosus (strain TM300) GN=ubiE PE=3 SV=1

 Score = 50.1 bits (118), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 55/123 (44%), Gaps = 21/123 (17%)

Query: 131 VSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY 190
           +SF   + WR+   +S                +  +G   +DV CG+  ++   +K+   
Sbjct: 29  ISFEQHKVWRKRVMKS---------------MQVKKGSKALDVCCGTADWTIALSKAVGP 73

Query: 191 SG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHC 249
           SG V+ LDFSENML+     + ++ T   SN+ LV+ D   LPF     D V  G  L  
Sbjct: 74  SGEVIGLDFSENMLK-----VGEEKTKNMSNIQLVQGDAMDLPFDDNEFDYVTIGFGLRN 128

Query: 250 WPS 252
            P 
Sbjct: 129 IPD 131

Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2).

Staphylococcus carnosus (strain TM300) (taxid: 396513)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 3

>sp|O66128|UBIE_MICLU Demethylmenaquinone methyltransferase OS=Micrococcus luteus GN=ubiE PE=3 SV=1

 Score = 48.9 bits (115), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 64/165 (38%), Gaps = 37/165 (22%)

Query: 131 VSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GT 189
           +SF   + WR+             + M Q   K  +G   +DV CG+G ++ + A++ G 
Sbjct: 38  ISFNQHKSWRK-------------YTMKQMNVK--KGSKALDVCCGTGDWTIQMAQAVGK 82

Query: 190 YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHC 249
              V+ LDFSENML      + Q  T    N+ L+  +   LPF     D    G  L  
Sbjct: 83  NGHVIGLDFSENMLS-----VAQGKTNHIQNIELIHGNAMELPFEDNIFDYTTIGFGLRN 137

Query: 250 WP-------------SPSNAASVFSSSYSLLSI---CYLLQFRYT 278
            P              P     V  +S+  + +    Y L F+Y 
Sbjct: 138 LPDYKKGLEEMYRVLKPGGMIVVLETSHPTMPVFKQGYKLYFKYV 182

Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2).

Micrococcus luteus (taxid: 1270)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 3

>sp|Q24W96|UBIE_DESHY Demethylmenaquinone methyltransferase OS=Desulfitobacterium hafniense (strain Y51) GN=ubiE PE=3 SV=1

 Score = 48.1 bits (113), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 53/124 (42%), Gaps = 18/124 (14%)

Query: 130 FVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-G 188
            +SF  ++GWR               K A +  ++  G  +VD+ CG+   S + A + G
Sbjct: 43  LMSFGLDKGWR---------------KKAVQTVEAKPGMTMVDICCGTAQLSLELAMTVG 87

Query: 189 TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALH 248
               +  LDFSENML++  + +    +   S + L + D   LPFA    D    G  L 
Sbjct: 88  EQGQITGLDFSENMLKKAQENLA--GSPYRSIIELRQGDAMNLPFADNSFDGATVGWGLR 145

Query: 249 CWPS 252
             P 
Sbjct: 146 NLPD 149

Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2).

Desulfitobacterium hafniense (strain Y51) (taxid: 138119)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 3

>sp|Q6GGU0|UBIE_STAAR Demethylmenaquinone methyltransferase OS=Staphylococcus aureus (strain MRSA252) GN=ubiE PE=3 SV=1

 Score = 47.4 bits (111), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 6/88 (6%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV 224
           +G   +DV CG+G ++   +K+ G+   V  +DFSENML      + ++ T    N+ LV
Sbjct: 49  KGMKALDVCCGTGDWTIALSKAVGSTGEVTGIDFSENMLE-----VGKEKTASMENVKLV 103

Query: 225 RADVCRLPFASGFVDAVHAGAALHCWPS 252
             D   LPF     D V  G  L   P 
Sbjct: 104 HGDAMELPFEDNSFDYVTIGFGLRNVPD 131

Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2).

Staphylococcus aureus (strain MRSA252) (taxid: 282458)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 3

>sp|Q4L6H3|UBIE_STAHJ Demethylmenaquinone methyltransferase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=ubiE PE=3 SV=1

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 6/87 (6%)

Query: 167 GGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
           G   +DV CG+  ++   +K+ G +  V  LDFSENML      + ++ T   +N+ LV 
Sbjct: 50  GSKALDVCCGTADWTIALSKAVGAHGEVTGLDFSENMLE-----VGKEKTKHMNNIHLVH 104

Query: 226 ADVCRLPFASGFVDAVHAGAALHCWPS 252
            D   LPF     D V  G  L   P 
Sbjct: 105 GDAMNLPFEDNSFDYVTIGFGLRNVPD 131

Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2).

Staphylococcus haemolyticus (strain JCSC1435) (taxid: 279808)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 3

>sp|Q2YY85|UBIE_STAAB Demethylmenaquinone methyltransferase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=ubiE PE=3 SV=1

 Score = 46.6 bits (109), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 6/88 (6%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV 224
           +G   +DV CG+G ++   +K+ G    V  +DFSENML      + ++ T    N+ LV
Sbjct: 49  KGTKALDVCCGTGDWTIALSKAVGPTGEVTGIDFSENMLE-----VGKEKTASMENVKLV 103

Query: 225 RADVCRLPFASGFVDAVHAGAALHCWPS 252
             D   LPF     D V  G  L   P 
Sbjct: 104 HGDAMELPFGDNSFDYVTIGFGLRNVPD 131

Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2).

Staphylococcus aureus (strain bovine RF122 / ET3-1) (taxid: 273036)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 3

>sp|P67063|UBIE_STAAW Demethylmenaquinone methyltransferase OS=Staphylococcus aureus (strain MW2) GN=ubiE PE=3 SV=1

 Score = 46.6 bits (109), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 6/88 (6%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV 224
           +G   +DV CG+G ++   +K+ G    V  +DFSENML      + ++ T    N+ LV
Sbjct: 49  KGTKALDVCCGTGDWTIALSKAVGPTGEVTGIDFSENMLE-----VGKEKTASMENVKLV 103

Query: 225 RADVCRLPFASGFVDAVHAGAALHCWPS 252
             D   LPF     D V  G  L   P 
Sbjct: 104 HGDAMELPFEDNSFDYVTIGFGLRNVPD 131

Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2).

Staphylococcus aureus (strain MW2) (taxid: 196620)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 3

>sp|A8Z450|UBIE_STAAT Demethylmenaquinone methyltransferase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=ubiE PE=3 SV=1

 Score = 46.6 bits (109), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 6/88 (6%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV 224
           +G   +DV CG+G ++   +K+ G    V  +DFSENML      + ++ T    N+ LV
Sbjct: 49  KGTKALDVCCGTGDWTIALSKAVGPTGEVTGIDFSENMLE-----VGKEKTASMENVKLV 103

Query: 225 RADVCRLPFASGFVDAVHAGAALHCWPS 252
             D   LPF     D V  G  L   P 
Sbjct: 104 HGDAMELPFEDNSFDYVTIGFGLRNVPD 131

Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2).

Staphylococcus aureus (strain USA300 / TCH1516) (taxid: 451516)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	319
363814481	341	uncharacterized protein LOC100798970 [Gl	0.764	0.715	0.733	1e-102
225463049	343	PREDICTED: uncharacterized methyltransfe	0.796	0.740	0.720	1e-102
356556565	341	PREDICTED: uncharacterized methyltransfe	0.764	0.715	0.717	1e-100
225463051	340	PREDICTED: uncharacterized methyltransfe	0.799	0.75	0.711	1e-100
224142467	332	predicted protein [Populus trichocarpa]	0.774	0.743	0.694	1e-100
296084557	338	unnamed protein product [Vitis vinifera]	0.789	0.745	0.715	1e-99
224120260	308	predicted protein [Populus trichocarpa]	0.670	0.694	0.796	2e-99
255581285	290	phosphatidylethanolamine n-methyltransfe	0.645	0.710	0.820	7e-99
388516609	342	unknown [Medicago truncatula]	0.764	0.713	0.713	4e-98
217072446	342	unknown [Medicago truncatula]	0.764	0.713	0.713	5e-98

>gi|363814481|ref|NP_001242875.1| uncharacterized protein LOC100798970 [Glycine max] gi|255636913|gb|ACU18789.1| unknown [Glycine max]

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 182/248 (73%), Positives = 210/248 (84%), Gaps = 4/248 (1%)

Query: 15  FPKYPCLSRNSPRLPQSLRFSS--TIRAVTLQPAKSE--RNQTLELEGDLFSCPICYEPL 70
           F K P LS  S   P+ LR  S  TIRA++   A+SE    Q   +E D+F+CP+CYEPL
Sbjct: 19  FSKCPRLSSKSHFRPRLLRSISQRTIRAISAVAAESELGTQQDHAIEADIFACPVCYEPL 78

Query: 71  IRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFRSPF 130
           IRKGP+GL L AIYRSGF C++C KTYSSKD YLDLTV +GL+DYTE++PA TELFRSP 
Sbjct: 79  IRKGPSGLNLPAIYRSGFMCKRCKKTYSSKDRYLDLTVTAGLRDYTEIQPARTELFRSPL 138

Query: 131 VSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY 190
           VSFL+ERGWRQNF +SGFPGPDEEFKMAQEYF+SA+GGLLVDVSCGSGLFSRKFAKSGTY
Sbjct: 139 VSFLHERGWRQNFRQSGFPGPDEEFKMAQEYFESAEGGLLVDVSCGSGLFSRKFAKSGTY 198

Query: 191 SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCW 250
           SGV+ALDFSENMLRQCYDFI++D+ + T+N+ALVRADV RLPF+SG VDAVHAGAALHCW
Sbjct: 199 SGVIALDFSENMLRQCYDFIEKDDALSTNNIALVRADVSRLPFSSGSVDAVHAGAALHCW 258

Query: 251 PSPSNAAS 258
           PSPSNA +
Sbjct: 259 PSPSNAVA 266

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463049|ref|XP_002268107.1| PREDICTED: uncharacterized methyltransferase At2g41040, chloroplastic [Vitis vinifera] gi|296084558|emb|CBI25579.3| unnamed protein product [Vitis vinifera]

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 191/265 (72%), Positives = 215/265 (81%), Gaps = 11/265 (4%)

Query: 3   IAAAAASSSSSLFPKYPCLSRNS----PRLPQSLRFSSTIRA---VTLQPAKSER-NQTL 54
           +A A++S    +FP+YP LSR+S    P    SLRF S IRA   V L+P  S + N  L
Sbjct: 1   MATASSSLHQPIFPQYPSLSRSSRFHPPLRLSSLRFPSRIRASSAVALEPESSTQLNNGL 60

Query: 55  ELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKD 114
           E   DLFSCP+CYEPLIRKGP GL L AIYRSGFKCR C+K+YSSKD YLDLT+ +G KD
Sbjct: 61  EF--DLFSCPVCYEPLIRKGPPGLNLPAIYRSGFKCRSCNKSYSSKDMYLDLTITAGSKD 118

Query: 115 YTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVS 174
           Y E++P  TELFRSP VSFLYERGWRQNFN+SGFPG DEEFKMAQEYF+   GGLLVDVS
Sbjct: 119 YNELQPNRTELFRSPLVSFLYERGWRQNFNQSGFPGRDEEFKMAQEYFEPVIGGLLVDVS 178

Query: 175 CGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTIL-TSNLALVRADVCRLPF 233
           CGSGLFSRKFA+SGTYSGVVALDFSENMLRQCYDFIK++N  L T+NLALVRADV RLPF
Sbjct: 179 CGSGLFSRKFAESGTYSGVVALDFSENMLRQCYDFIKKENPALATTNLALVRADVSRLPF 238

Query: 234 ASGFVDAVHAGAALHCWPSPSNAAS 258
           ++G VDAVHAGAALHCWPSPSNA +
Sbjct: 239 STGSVDAVHAGAALHCWPSPSNAVA 263

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556565|ref|XP_003546595.1| PREDICTED: uncharacterized methyltransferase At2g41040, chloroplastic-like [Glycine max]

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 178/248 (71%), Positives = 207/248 (83%), Gaps = 4/248 (1%)

Query: 15  FPKYPCLSRNSPRLPQSLR--FSSTIRAVTLQPAKSE--RNQTLELEGDLFSCPICYEPL 70
           F + P LS  S   P+  R    S IRA++   A+SE    Q   +E D+F+CP+CYEPL
Sbjct: 19  FLRCPRLSSKSQFHPRRFRSQTQSIIRAISAVAAESELGTQQDQAIEADIFACPVCYEPL 78

Query: 71  IRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFRSPF 130
           IRKGP+GL L AIYRSGF C++C K+YSSKD YLDLTV +GL+DYTE++PA TELFRSP 
Sbjct: 79  IRKGPSGLNLPAIYRSGFMCKRCKKSYSSKDRYLDLTVTAGLRDYTEIQPARTELFRSPL 138

Query: 131 VSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY 190
           VSFLYERGWRQNF +SGFPGPDEEFKMAQEYF+SA+GGL+VDVSCGSGLFSRKFAKSG Y
Sbjct: 139 VSFLYERGWRQNFRQSGFPGPDEEFKMAQEYFESAKGGLIVDVSCGSGLFSRKFAKSGAY 198

Query: 191 SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCW 250
           SGV+ALDFSENMLRQCY+FIK+D+T+ T+N+ALVRADV RLPF SG VDAVHAGAALHCW
Sbjct: 199 SGVIALDFSENMLRQCYEFIKKDDTLSTTNIALVRADVSRLPFPSGSVDAVHAGAALHCW 258

Query: 251 PSPSNAAS 258
           PSPSNA +
Sbjct: 259 PSPSNAVA 266

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463051|ref|XP_002268200.1| PREDICTED: uncharacterized methyltransferase At2g41040, chloroplastic-like [Vitis vinifera]

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 187/263 (71%), Positives = 208/263 (79%), Gaps = 8/263 (3%)

Query: 3   IAAAAASSSSSLFPKYPCLSRNSPRL--PQ--SLRFSSTIRA---VTLQPAKSERNQTLE 55
           +A AA+     LFPKYP L   S  +  PQ  SL F S  RA   V L+P  S +    +
Sbjct: 1   MAMAASFLHQPLFPKYPFLLHKSQFISRPQISSLPFPSRFRASSAVALEPESSPQLNN-D 59

Query: 56  LEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDY 115
           ++ DLFSCP+CYEPLIRKGP GL L AIYRSGFKC+ C+K+YSSKD YLDLT+ +G K Y
Sbjct: 60  MDFDLFSCPVCYEPLIRKGPPGLNLPAIYRSGFKCKTCNKSYSSKDMYLDLTITAGSKAY 119

Query: 116 TEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSC 175
            E +P  TELFRSP VSFLYERGWRQNFN  GFPGPDEEFKMAQEYFK A GGLLVDVSC
Sbjct: 120 NEAQPVRTELFRSPLVSFLYERGWRQNFNLRGFPGPDEEFKMAQEYFKPAAGGLLVDVSC 179

Query: 176 GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235
           GSGLFSRKFA+SGTYSGVVALDFSENML QCYDFIK+DN  LT+NLALVRAD+ RLPF+S
Sbjct: 180 GSGLFSRKFAESGTYSGVVALDFSENMLHQCYDFIKKDNPSLTTNLALVRADISRLPFSS 239

Query: 236 GFVDAVHAGAALHCWPSPSNAAS 258
           G VDAVHAGAALHCWPSPSNA +
Sbjct: 240 GSVDAVHAGAALHCWPSPSNAVA 262

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142467|ref|XP_002324579.1| predicted protein [Populus trichocarpa] gi|222866013|gb|EEF03144.1| predicted protein [Populus trichocarpa]

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 186/268 (69%), Positives = 210/268 (78%), Gaps = 21/268 (7%)

Query: 1   MAIAAAAASS--SSSLFPKYPCLSRNSPRLPQ-----SLRFSSTIRA---VTLQPAKSER 50
           MA+A+ A       S+  KYP LS  S   P      SLRF STIRA   V L+P ++  
Sbjct: 1   MAMASNALHHPLHQSISLKYPHLSHISRFSPSCLRFTSLRFPSTIRATSAVALEPNQA-- 58

Query: 51  NQTLELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVIS 110
                    +F+CP+CYEPLIRKGP G  L AIYRS FKC+KC KTYSSKDNYLDLT+ +
Sbjct: 59  ---------IFACPVCYEPLIRKGPPGFNLPAIYRSSFKCKKCTKTYSSKDNYLDLTITA 109

Query: 111 GLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLL 170
           G+KDYTE+ P  TELFRSP VSFLYERGWRQ+FN+SGFPGPDEEF+MAQEYFK A+GGLL
Sbjct: 110 GMKDYTEINPVRTELFRSPLVSFLYERGWRQSFNQSGFPGPDEEFEMAQEYFKPARGGLL 169

Query: 171 VDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230
           VDVSCGSGLFSRKFAKSG YS V+ALDFSENMLRQCYD+IKQD+TI T+NL L+RADV R
Sbjct: 170 VDVSCGSGLFSRKFAKSGAYSKVIALDFSENMLRQCYDYIKQDDTISTTNLGLIRADVSR 229

Query: 231 LPFASGFVDAVHAGAALHCWPSPSNAAS 258
           LPFASG VDAVHAGAA+HCWPSPSNA S
Sbjct: 230 LPFASGSVDAVHAGAAMHCWPSPSNAVS 257

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084557|emb|CBI25578.3| unnamed protein product [Vitis vinifera]

 Score =  369 bits (947), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 186/260 (71%), Positives = 206/260 (79%), Gaps = 8/260 (3%)

Query: 6   AAASSSSSLFPKYPCLSRNSPRL--PQ--SLRFSSTIRA---VTLQPAKSERNQTLELEG 58
           AA+     LFPKYP L   S  +  PQ  SL F S  RA   V L+P  S +    +++ 
Sbjct: 2   AASFLHQPLFPKYPFLLHKSQFISRPQISSLPFPSRFRASSAVALEPESSPQLNN-DMDF 60

Query: 59  DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEV 118
           DLFSCP+CYEPLIRKGP GL L AIYRSGFKC+ C+K+YSSKD YLDLT+ +G K Y E 
Sbjct: 61  DLFSCPVCYEPLIRKGPPGLNLPAIYRSGFKCKTCNKSYSSKDMYLDLTITAGSKAYNEA 120

Query: 119 KPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSG 178
           +P  TELFRSP VSFLYERGWRQNFN  GFPGPDEEFKMAQEYFK A GGLLVDVSCGSG
Sbjct: 121 QPVRTELFRSPLVSFLYERGWRQNFNLRGFPGPDEEFKMAQEYFKPAAGGLLVDVSCGSG 180

Query: 179 LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFV 238
           LFSRKFA+SGTYSGVVALDFSENML QCYDFIK+DN  LT+NLALVRAD+ RLPF+SG V
Sbjct: 181 LFSRKFAESGTYSGVVALDFSENMLHQCYDFIKKDNPSLTTNLALVRADISRLPFSSGSV 240

Query: 239 DAVHAGAALHCWPSPSNAAS 258
           DAVHAGAALHCWPSPSNA +
Sbjct: 241 DAVHAGAALHCWPSPSNAVA 260

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120260|ref|XP_002331004.1| predicted protein [Populus trichocarpa] gi|222872934|gb|EEF10065.1| predicted protein [Populus trichocarpa]

 Score =  368 bits (944), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 172/216 (79%), Positives = 191/216 (88%), Gaps = 2/216 (0%)

Query: 43  LQPAKSERNQTLELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDN 102
            Q   ++++QTLE+  D F+CPICY+PLIRKGP G  L AIYRSGFKC +C+KTYSSK+N
Sbjct: 20  FQELSTQQSQTLEV--DPFACPICYQPLIRKGPKGFNLPAIYRSGFKCNRCNKTYSSKEN 77

Query: 103 YLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYF 162
           YLDLT+ +G+KDYTEVKP  TELFRSP VSFLYERGWRQNFN+SGFPGPDEEFKMAQEYF
Sbjct: 78  YLDLTITAGMKDYTEVKPVRTELFRSPLVSFLYERGWRQNFNQSGFPGPDEEFKMAQEYF 137

Query: 163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLA 222
           K  +GGLLVDVSCGSGLFSRKFAKSGTYS V+ALDFSENMLRQCYDFIKQD+TI T NLA
Sbjct: 138 KPTEGGLLVDVSCGSGLFSRKFAKSGTYSKVIALDFSENMLRQCYDFIKQDDTISTRNLA 197

Query: 223 LVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAAS 258
           LVRADV RLPFASG VDA+HAGAALHCWPS SNA +
Sbjct: 198 LVRADVSRLPFASGSVDAIHAGAALHCWPSASNAVA 233

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581285|ref|XP_002531454.1| phosphatidylethanolamine n-methyltransferase, putative [Ricinus communis] gi|223528947|gb|EEF30941.1| phosphatidylethanolamine n-methyltransferase, putative [Ricinus communis]

 Score =  366 bits (940), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 169/206 (82%), Positives = 184/206 (89%)

Query: 51  NQTLELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVIS 110
            QT   E D+F+CP+CYEPLIRKGP G  L AIYRSGFKC+KC+KTYSSKDNYLDLT+ +
Sbjct: 6   QQTQTFEDDVFACPVCYEPLIRKGPPGFNLSAIYRSGFKCKKCNKTYSSKDNYLDLTITA 65

Query: 111 GLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLL 170
            +K+YTEVKPA TELFRSP VSFLYERGWRQNFN+SGFPGPDEEFKMAQEYFK A+GG+L
Sbjct: 66  SMKEYTEVKPARTELFRSPLVSFLYERGWRQNFNQSGFPGPDEEFKMAQEYFKPAEGGIL 125

Query: 171 VDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230
           VDVSCGSGLFSRKFA SGTYS VVALDFSENMLRQCYDFIKQD+ I   +LALVRADV R
Sbjct: 126 VDVSCGSGLFSRKFATSGTYSKVVALDFSENMLRQCYDFIKQDDNISEKDLALVRADVSR 185

Query: 231 LPFASGFVDAVHAGAALHCWPSPSNA 256
           LPF+SG VDAVHAGAALHCWPSPSNA
Sbjct: 186 LPFSSGSVDAVHAGAALHCWPSPSNA 211

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388516609|gb|AFK46366.1| unknown [Medicago truncatula]

 Score =  363 bits (933), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 179/251 (71%), Positives = 202/251 (80%), Gaps = 7/251 (2%)

Query: 15  FPKYPCL---SRNSPRL--PQSLRFS--STIRAVTLQPAKSERNQTLELEGDLFSCPICY 67
           FPK P L   S   PRL   Q+ RF+  +T   V   P      +    + DLF+CPICY
Sbjct: 17  FPKCPHLFTKSHFHPRLLRSQTQRFNIRATSAVVVDSPLDLSTKKDQGTQVDLFACPICY 76

Query: 68  EPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFR 127
           EPLIRKGP GL L AIYRSGFKC++C K+Y+SKD YLDLTV SGL+DY EV+P  TELFR
Sbjct: 77  EPLIRKGPIGLNLPAIYRSGFKCKRCQKSYTSKDGYLDLTVTSGLRDYVEVQPNRTELFR 136

Query: 128 SPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS 187
           SP VSFLYERGWRQNF +SGFPGPDEEF+MAQEYF+ A+GG +VDVSCGSGLFSRKFAKS
Sbjct: 137 SPLVSFLYERGWRQNFRQSGFPGPDEEFRMAQEYFEPAKGGRIVDVSCGSGLFSRKFAKS 196

Query: 188 GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAAL 247
           GTYSGV+ALDFSENMLRQCYDFIK+D+T+ T+NLALVRADV RLPF SG VDAVHAGAAL
Sbjct: 197 GTYSGVIALDFSENMLRQCYDFIKKDDTLSTTNLALVRADVSRLPFESGSVDAVHAGAAL 256

Query: 248 HCWPSPSNAAS 258
           HCWPSPSNA +
Sbjct: 257 HCWPSPSNAVA 267

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072446|gb|ACJ84583.1| unknown [Medicago truncatula]

 Score =  363 bits (933), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 179/251 (71%), Positives = 202/251 (80%), Gaps = 7/251 (2%)

Query: 15  FPKYPCL---SRNSPRL--PQSLRFS--STIRAVTLQPAKSERNQTLELEGDLFSCPICY 67
           FPK P L   S   PRL   Q+ RF+  +T   V   P      +    + DLF+CPICY
Sbjct: 17  FPKCPHLFTKSHFHPRLLRSQTQRFNIRATSAVVVDSPLDLSTKKDQGTQVDLFACPICY 76

Query: 68  EPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFR 127
           EPLIRKGP GL L AIYRSGFKC++C K+Y+SKD YLDLTV SGL+DY EV+P  TELFR
Sbjct: 77  EPLIRKGPIGLNLPAIYRSGFKCKRCQKSYTSKDGYLDLTVTSGLRDYVEVQPNRTELFR 136

Query: 128 SPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS 187
           SP VSFLYERGWRQNF +SGFPGPDEEF+MAQEYF+ A+GG +VDVSCGSGLFSRKFAKS
Sbjct: 137 SPLVSFLYERGWRQNFRQSGFPGPDEEFRMAQEYFEPAKGGRIVDVSCGSGLFSRKFAKS 196

Query: 188 GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAAL 247
           GTYSGV+ALDFSENMLRQCYDFIK+D+T+ T+NLALVRADV RLPF SG VDAVHAGAAL
Sbjct: 197 GTYSGVIALDFSENMLRQCYDFIKKDDTLSTTNLALVRADVSRLPFESGSVDAVHAGAAL 256

Query: 248 HCWPSPSNAAS 258
           HCWPSPSNA +
Sbjct: 257 HCWPSPSNAVA 267

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	319
TAIR|locus:2063218	352	AT2G41040 [Arabidopsis thalian	0.683	0.619	0.707	1e-82
TAIR|locus:2194759	355	AT1G78140 [Arabidopsis thalian	0.630	0.566	0.543	1.4e-55
UNIPROTKB|G5EGY9	380	MGCH7_ch7g116 "Sterol 24-C-met	0.347	0.292	0.314	0.00056

TAIR|locus:2063218 AT2G41040 [Arabidopsis thaliana (taxid:3702)]

 Score = 829 (296.9 bits), Expect = 1.0e-82, P = 1.0e-82
 Identities = 157/222 (70%), Positives = 182/222 (81%)

Query:    33 RFSSTIRAVTLQPAKSERNQT--LELEG-DLFSCPICYEPLIRKGPTGLTLGAIYRSGFK 89
             RF S   +     +   +N+T  +E+E   +F+CP+CYEPL+RKGP+G+ L AIYRSGFK
Sbjct:    48 RFPSAAISAVAPKSDINKNETPKIEIEETQVFACPVCYEPLMRKGPSGINLQAIYRSGFK 107

Query:    90 CRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFP 149
             C +C+KTYSSKD YLDLTV + L DY EVKP +TELFRSP VSFLYERGWRQ F RSGFP
Sbjct:   108 CGQCNKTYSSKDEYLDLTVTADLDDYNEVKPITTELFRSPLVSFLYERGWRQAFKRSGFP 167

Query:   150 GPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDF 209
             GPDEEF+MA+EYFK A+GGLLVDVSCGSGLFSRKFA+SG YSGV+ALD+SENMLRQC +F
Sbjct:   168 GPDEEFRMAEEYFKEAEGGLLVDVSCGSGLFSRKFAQSGKYSGVIALDYSENMLRQCKEF 227

Query:   210 IKQDNTILTS-NLALVRADVCRLPFASGFVDAVHAGAALHCW 250
             IK DNT   S N+A+VRADV RLPF SG VDAVHAGAALHCW
Sbjct:   228 IKNDNTFDNSTNIAVVRADVSRLPFPSGSVDAVHAGAALHCW 269

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0080167 "response to karrikin" evidence=IEP

TAIR|locus:2194759 AT1G78140 [Arabidopsis thaliana (taxid:3702)]

 Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
 Identities = 112/206 (54%), Positives = 140/206 (67%)

Query:    47 KSERNQTLELEGDLFSCPICYEPLIR-KGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLD 105
             K ++N+    E  + +CPICY  L     P GL   A      +C  C ++YS  + +LD
Sbjct:    65 KKDKNRG---EKKILACPICYNSLAWISQPNGLIESAASGIQVQCNTCKRSYSGNETHLD 121

Query:   106 LTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSA 165
             L V SG K Y+E  P STELFR+P VSFLYERGWRQNF   GFPGP++EF+MA+ Y K  
Sbjct:   122 LAVASGSKRYSEPMPLSTELFRTPLVSFLYERGWRQNFIWGGFPGPEKEFEMAKAYLKPV 181

Query:   166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFI-KQDNTILTSNLALV 224
              GG ++D SCGSG+FSR F +S  +S V+ALD+SENMLRQCY+ + K++N      L LV
Sbjct:   182 LGGNIIDASCGSGMFSRLFTRSDLFSLVIALDYSENMLRQCYELLNKEENFPNKEKLVLV 241

Query:   225 RADVCRLPFASGFVDAVHAGAALHCW 250
             RAD+ RLPF SG VDAVHAGAALHCW
Sbjct:   242 RADIARLPFLSGSVDAVHAGAALHCW 267

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0010287 "plastoglobule" evidence=IDA

UNIPROTKB|G5EGY9 MGCH7_ch7g116 "Sterol 24-C-methyltransferase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 114 (45.2 bits), Expect = 0.00056, P = 0.00056
 Identities = 39/124 (31%), Positives = 63/124 (50%)

Query:   134 LYERGWRQNFNRSGFPGPDEEFKMA---QEYFKSAQGGL-----LVDVSCGSGLFSRKFA 185
             +YE GW Q+F+   F   +E F  A    E++ + Q G+     ++DV CG G  +R+ A
Sbjct:    90 IYEYGWGQSFHFCRF-SHNESFYQAIARHEHYLAHQIGIKEGMTVLDVGCGVGGPAREIA 148

Query:   186 KSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA-G 244
             K  T   VV L+ ++  + +   + KQ+   L S L  V+ D  ++ F     DAV+A  
Sbjct:   149 KF-TGCNVVGLNNNDYQIDRATHYAKQEK--LDSQLQFVKGDFMQMSFPDESFDAVYAIE 205

Query:   245 AALH 248
             A +H
Sbjct:   206 ATVH 209


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.138   0.423    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      319       291   0.00089  115 3  11 22  0.48    33
                                                     33  0.43    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  602 (64 KB)
  Total size of DFA:  204 KB (2115 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.99u 0.09s 25.08t   Elapsed:  00:00:01
  Total cpu time:  24.99u 0.09s 25.08t   Elapsed:  00:00:01
  Start:  Mon May 20 17:33:40 2013   End:  Mon May 20 17:33:41 2013

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0WPT7	Y2104_ARATH	2, ., 1, ., 1, ., -	0.6363	0.8025	0.7272	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00005656001 SubName- Full=Chromosome undetermined scaffold_155, whole genome shotgun sequence; (343 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	319
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	2e-13
PRK00216	239	PRK00216, ubiE, ubiquinone/menaquinone biosynthesi	1e-10
TIGR02072	240	TIGR02072, BioC, biotin biosynthesis protein BioC	7e-10
PRK08317	241	PRK08317, PRK08317, hypothetical protein; Provisio	1e-08
TIGR01934	223	TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone	5e-08
pfam08242	98	pfam08242, Methyltransf_12, Methyltransferase doma	2e-07
COG2226	238	COG2226, UbiE, Methylase involved in ubiquinone/me	2e-07
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	3e-07
pfam13649	97	pfam13649, Methyltransf_25, Methyltransferase doma	5e-06
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	2e-04
PRK05785	226	PRK05785, PRK05785, hypothetical protein; Provisio	5e-04
TIGR02752	231	TIGR02752, MenG_heptapren, demethylmenaquinone met	9e-04
pfam01209	233	pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransf	0.002
PLN02233	261	PLN02233, PLN02233, ubiquinone biosynthesis methyl	0.003

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 65.0 bits (159), Expect = 2e-13
 Identities = 25/86 (29%), Positives = 32/86 (37%), Gaps = 10/86 (11%)

Query: 171 VDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230
           +DV CG+GL +   A+ G    V  +D S  ML               +    V  D   
Sbjct: 1   LDVGCGTGLLAEALARRGGAR-VTGVDLSPEMLALARKR---------APRKFVVGDAED 50

Query: 231 LPFASGFVDAVHAGAALHCWPSPSNA 256
           LPF     D V +   LH  P P  A
Sbjct: 51  LPFPDESFDVVVSSLVLHHLPDPERA 76

Members of this family are SAM dependent methyltransferases. Length = 92

>gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

 Score = 60.2 bits (147), Expect = 1e-10
 Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 9/90 (10%)

Query: 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENML---RQCYDFIK 211
           +   ++     G  ++D++CG+G  +   AK+   +G VV LDFSE ML   R+     K
Sbjct: 41  RKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGRE-----K 95

Query: 212 QDNTILTSNLALVRADVCRLPFASGFVDAV 241
             +  L+ N+  V+ D   LPF     DAV
Sbjct: 96  LRDLGLSGNVEFVQGDAEALPFPDNSFDAV 125

Length = 239

>gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC

 Score = 58.1 bits (141), Expect = 7e-10
 Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 10/104 (9%)

Query: 172 DVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231
           D+ CG+G  +R   K    +  +A D S  ML Q         T L+ N+  +  D  +L
Sbjct: 40  DIGCGTGYLTRALLKRFPQAEFIANDISAGMLAQA-------KTKLSENVQFICGDAEKL 92

Query: 232 PFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275
           P      D + +  AL  W    + +   S    +L    LL F
Sbjct: 93  PLEDSSFDLIVSNLALQ-W--CDDLSQALSELARVLKPGGLLAF 133

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240

>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 32/93 (34%), Positives = 43/93 (46%), Gaps = 5/93 (5%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
           G  ++DV CG G  +R+ A+     G VV +D SE ML       K+    L  N+  VR
Sbjct: 20  GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAML----ALAKERAAGLGPNVEFVR 75

Query: 226 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAAS 258
            D   LPF  G  DAV +   L     P+ A +
Sbjct: 76  GDADGLPFPDGSFDAVRSDRVLQHLEDPARALA 108

Length = 241

>gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis methyltransferases

 Score = 52.6 bits (127), Expect = 5e-08
 Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 21/113 (18%)

Query: 130 FVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT 189
            +SF   R WR+   +       ++               ++DV+CG+G  + + AKS  
Sbjct: 18  LLSFGLHRLWRRRAVKLIGVFKGQK---------------VLDVACGTGDLAIELAKSAP 62

Query: 190 YSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 241
             G V  +DFS  ML      + +  + L  N+  ++AD   LPF     DAV
Sbjct: 63  DRGKVTGVDFSSEMLE-----VAKKKSELPLNIEFIQADAEALPFEDNSFDAV 110

This model represents a family of methyltransferases involved in the biosynthesis of menaquinone and ubiqinone. Some members such as the UbiE enzyme from E. coli are believed to act in both pathways, while others may act in only the menaquinone pathway. These methyltransferases are members of the UbiE/CoQ family of methyltransferases (pfam01209) which also contains ubiquinone methyltransferases and other methyltransferases. Members of this clade include a wide distribution of bacteria and eukaryotes, but no archaea. An outgroup for this clade is provided by the phosphatidylethanolamine methyltransferase (EC 2.1.1.17) from Rhodobacter sphaeroides. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 223

>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 5/98 (5%)

Query: 171 VDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230
           +D+ CG+G   R   ++        +D S   L    + +     +    + L   D   
Sbjct: 1   LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAID 60

Query: 231 LPFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLS 268
           L   S   D V A   LH    P    +V  +   LL 
Sbjct: 61  LDPGS--FDVVVASNVLHHLADP---RAVLRNLRRLLK 93

Members of this family are SAM dependent methyltransferases. Length = 98

>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 3/82 (3%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226
           G  ++DV+CG+G  +   AKS     VV LD SE+ML       ++       N+  V  
Sbjct: 52  GDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVA---REKLKKKGVQNVEFVVG 108

Query: 227 DVCRLPFASGFVDAVHAGAALH 248
           D   LPF     DAV     L 
Sbjct: 109 DAENLPFPDNSFDAVTISFGLR 130

Length = 238

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 9/89 (10%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENML---RQCYDFIKQDNTILTSNLA 222
            G  ++D+ CG+G  + + A+    + V  +D S  ML   R+               + 
Sbjct: 1   PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGP------RIT 54

Query: 223 LVRADVCRLPFASGFVDAVHAGAALHCWP 251
            V+ D           DAV  G       
Sbjct: 55  FVQGDAPDALDLLEGFDAVFIGGGGGDLL 83

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain

 Score = 43.9 bits (104), Expect = 5e-06
 Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 5/98 (5%)

Query: 170 LVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC 229
           ++D+ CG+G   R  A++G  S V  +D S+  L    + ++     +      V AD  
Sbjct: 1   ILDLGCGTGRVLRALARAG-PSSVTGVDISKEALELAKERLRDKGPKVR----FVVADAR 55

Query: 230 RLPFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLL 267
            LPF  G  D V        + SP    ++   +  LL
Sbjct: 56  DLPFEEGSFDLVICAGLSLDYLSPKQLRALLREAARLL 93

This family appears to be a methyltransferase domain. Length = 97

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 5/83 (6%)

Query: 170 LVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC 229
           ++D+ CG+G  +   A       V  +D S   L       K    +L  N+ +++ D  
Sbjct: 2   VLDLGCGTGALALALASGPGAR-VTGVDISPVALELAR---KAAAALLADNVEVLKGDAE 57

Query: 230 RLPF-ASGFVDAVHAGAALHCWP 251
            LP  A    D + +   LH   
Sbjct: 58  ELPPEADESFDVIISDPPLHHLV 80

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|235607 PRK05785, PRK05785, hypothetical protein; Provisional

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 29/86 (33%), Positives = 37/86 (43%), Gaps = 22/86 (25%)

Query: 168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD 227
             ++DV+ G G  S  F K   Y  VVALD++ENML+                + LV  D
Sbjct: 53  KKVLDVAAGKGELSYHFKKVFKYY-VVALDYAENMLK----------------MNLVADD 95

Query: 228 --VC---RLPFASGFVDAVHAGAALH 248
             V     LPF     D V +  ALH
Sbjct: 96  KVVGSFEALPFRDKSFDVVMSSFALH 121

Length = 226

>gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase

 Score = 39.8 bits (93), Expect = 9e-04
 Identities = 29/87 (33%), Positives = 38/87 (43%), Gaps = 4/87 (4%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALV 224
            G   +DV CG+  +S   A++    G V+ LDFSENML      +K        N+ LV
Sbjct: 45  AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG---LHNVELV 101

Query: 225 RADVCRLPFASGFVDAVHAGAALHCWP 251
             +   LPF     D V  G  L   P
Sbjct: 102 HGNAMELPFDDNSFDYVTIGFGLRNVP 128

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 231

>gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 4/82 (4%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
           G   +DV+ G+G ++   + S   SG VV LD +ENML++     K++      N+  ++
Sbjct: 48  GNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLDINENMLKEGEKKAKEEGKY---NIEFLQ 104

Query: 226 ADVCRLPFASGFVDAVHAGAAL 247
            +   LPF     D V     L
Sbjct: 105 GNAEELPFEDDSFDIVTISFGL 126

Length = 233

>gnl|CDD|177877 PLN02233, PLN02233, ubiquinone biosynthesis methyltransferase

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 7/96 (7%)

Query: 156 KMAQEYFKSAQGGLLVDVSCGSG----LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIK 211
           +MA  +  +  G  ++D+ CGSG    L S K    G    V+ LDFS   L       +
Sbjct: 63  RMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGK---VMGLDFSSEQLAVAASRQE 119

Query: 212 QDNTILTSNLALVRADVCRLPFASGFVDAVHAGAAL 247
                   N+  +  D   LPF   + DA+  G  L
Sbjct: 120 LKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYGL 155

Length = 261

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	319
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.92
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.9
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.9
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.85
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.83
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.77
PRK05785	226	hypothetical protein; Provisional	99.77
PLN02244	340	tocopherol O-methyltransferase	99.75
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.73
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.73
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.71
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.71
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.7
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.7
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.68
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.68
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.66
PRK11207	197	tellurite resistance protein TehB; Provisional	99.66
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.65
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.64
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.64
KOG4300	252	consensus Predicted methyltransferase [General fun	99.63
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.63
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.63
PLN02490	340	MPBQ/MSBQ methyltransferase	99.62
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.62
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.62
PLN02336	475	phosphoethanolamine N-methyltransferase	99.62
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.62
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.61
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.61
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.6
PRK08317	241	hypothetical protein; Provisional	99.6
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.6
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.59
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.59
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.57
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.57
PRK06202	232	hypothetical protein; Provisional	99.56
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.55
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.55
PRK12335	287	tellurite resistance protein TehB; Provisional	99.55
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.54
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.54
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.54
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.53
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.53
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.52
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.51
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.51
PRK06922	677	hypothetical protein; Provisional	99.5
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.49
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.48
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.48
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.48
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.48
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.47
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.47
PLN02336	475	phosphoethanolamine N-methyltransferase	99.45
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.45
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.44
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.44
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.44
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.43
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.43
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.41
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.41
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.41
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.41
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.4
PLN03075	296	nicotianamine synthase; Provisional	99.4
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.4
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.39
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.38
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.37
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.35
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.33
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.32
PRK14968	188	putative methyltransferase; Provisional	99.31
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.3
PRK04266	226	fibrillarin; Provisional	99.3
PLN02232	160	ubiquinone biosynthesis methyltransferase	99.3
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.3
PRK07402	196	precorrin-6B methylase; Provisional	99.3
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.3
KOG3010	261	consensus Methyltransferase [General function pred	99.26
TIGR03438	301	probable methyltransferase. This model represents	99.24
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.24
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.23
PRK14967	223	putative methyltransferase; Provisional	99.23
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.23
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.22
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.22
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.2
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.2
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.19
KOG1271	227	consensus Methyltransferases [General function pre	99.19
PHA03411	279	putative methyltransferase; Provisional	99.19
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	99.18
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.17
COG4123	248	Predicted O-methyltransferase [General function pr	99.17
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.17
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.14
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	99.12
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.11
TIGR00438	188	rrmJ cell division protein FtsJ.	99.11
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.1
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.1
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.1
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.09
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.08
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.08
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.07
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	99.07
PTZ00146	293	fibrillarin; Provisional	99.07
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.06
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.02
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.02
PRK00811	283	spermidine synthase; Provisional	99.01
KOG2361	264	consensus Predicted methyltransferase [General fun	99.01
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.0
PRK04457	262	spermidine synthase; Provisional	99.0
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	98.99
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	98.99
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.98
PRK14902	444	16S rRNA methyltransferase B; Provisional	98.97
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	98.97
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.96
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.96
PRK14904	445	16S rRNA methyltransferase B; Provisional	98.95
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	98.95
PHA03412	241	putative methyltransferase; Provisional	98.94
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.93
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.92
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.91
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	98.9
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.88
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	98.88
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.87
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.84
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	98.84
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	98.82
PRK04148	134	hypothetical protein; Provisional	98.81
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.81
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.8
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.8
PRK01581	374	speE spermidine synthase; Validated	98.8
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.8
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.78
COG2890	280	HemK Methylase of polypeptide chain release factor	98.76
PLN02366	308	spermidine synthase	98.75
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.75
PRK03612	521	spermidine synthase; Provisional	98.72
KOG2940	325	consensus Predicted methyltransferase [General fun	98.71
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.69
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.68
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.66
PLN02476	278	O-methyltransferase	98.66
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.64
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	98.64
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	98.63
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.63
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.62
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.62
PLN02672	1082	methionine S-methyltransferase	98.62
COG4122	219	Predicted O-methyltransferase [General function pr	98.61
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.61
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.6
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.57
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.57
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.56
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.54
KOG2899	288	consensus Predicted methyltransferase [General fun	98.54
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.54
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	98.48
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.48
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.48
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.48
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.47
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	98.46
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.44
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.44
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.43
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	98.42
KOG1331	293	consensus Predicted methyltransferase [General fun	98.4
KOG2904	328	consensus Predicted methyltransferase [General fun	98.4
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.35
PLN02823	336	spermine synthase	98.33
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.31
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.31
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.28
COG2521	287	Predicted archaeal methyltransferase [General func	98.27
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.27
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.26
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.26
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	98.18
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.17
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	98.17
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.16
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.15
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.12
PF13679	141	Methyltransf_32: Methyltransferase domain	98.11
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.11
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.09
PRK11827	60	hypothetical protein; Provisional	98.09
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.08
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.08
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	98.07
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	98.07
COG2835	60	Uncharacterized conserved protein [Function unknow	98.06
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.06
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.04
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	98.02
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	98.02
COG4076	252	Predicted RNA methylase [General function predicti	98.01
KOG2352	482	consensus Predicted spermine/spermidine synthase [	97.98
PRK00536	262	speE spermidine synthase; Provisional	97.95
COG0742	187	N6-adenine-specific methylase [DNA replication, re	97.93
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	97.93
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	97.92
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	97.91
COG2520	341	Predicted methyltransferase [General function pred	97.86
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	97.82
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.81
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	97.8
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	97.8
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	97.78
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	97.76
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	97.76
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	97.73
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	97.72
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	97.72
PF03966	68	Trm112p: Trm112p-like protein; InterPro: IPR005651	97.69
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.65
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	97.56
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	97.55
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	97.53
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	97.53
COG3897	218	Predicted methyltransferase [General function pred	97.52
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	97.52
KOG2730	263	consensus Methylase [General function prediction o	97.4
COG2384	226	Predicted SAM-dependent methyltransferase [General	97.34
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	97.31
KOG3115	249	consensus Methyltransferase-like protein [General	97.21
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	97.2
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	97.17
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	97.14
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	97.11
PRK10742	250	putative methyltransferase; Provisional	97.09
KOG4058	199	consensus Uncharacterized conserved protein [Funct	97.05
KOG3201	201	consensus Uncharacterized conserved protein [Funct	97.01
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	97.0
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	96.93
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	96.91
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	96.86
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	96.75
COG4262	508	Predicted spermidine synthase with an N-terminal m	96.71
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	96.66
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	96.56
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	96.54
PRK09678	72	DNA-binding transcriptional regulator; Provisional	96.42
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	96.36
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	96.19
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	96.07
TIGR01206	54	lysW lysine biosynthesis protein LysW. This very s	96.03
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	95.96
PRK11524	284	putative methyltransferase; Provisional	95.9
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	95.85
COG0286	489	HsdM Type I restriction-modification system methyl	95.85
PF08274	30	PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR01	95.77
PRK00420	112	hypothetical protein; Validated	95.73
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	95.7
COG1645	131	Uncharacterized Zn-finger containing protein [Gene	95.58
PRK13699	227	putative methylase; Provisional	95.55
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	95.55
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	95.37
COG4798	238	Predicted methyltransferase [General function pred	95.19
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	95.14
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	95.11
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	95.11
PF14803	34	Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.	95.07
KOG1501	636	consensus Arginine N-methyltransferase [General fu	94.91
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	94.9
PHA00626	59	hypothetical protein	94.88
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	94.65
PHA01634	156	hypothetical protein	94.54
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	94.47
PF08792	33	A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: I	94.43
COG1997	89	RPL43A Ribosomal protein L37AE/L43A [Translation,	94.34
PRK00464	154	nrdR transcriptional regulator NrdR; Validated	94.29
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	94.25
PF04606	47	Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: I	94.2
PF11781	36	RRN7: RNA polymerase I-specific transcription init	94.15
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	94.03
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	93.95
PF01096	39	TFIIS_C: Transcription factor S-II (TFIIS); InterP	93.91
PRK00432	50	30S ribosomal protein S27ae; Validated	93.9
PF08271	43	TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013	93.86
PF09297	32	zf-NADH-PPase: NADH pyrophosphatase zinc ribbon do	93.75
KOG1088	124	consensus Uncharacterized conserved protein [Funct	93.72
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	93.67
PRK10220	111	hypothetical protein; Provisional	93.64
TIGR00686	109	phnA alkylphosphonate utilization operon protein P	93.62
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	93.46
COG1565	370	Uncharacterized conserved protein [Function unknow	93.43
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	93.42
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	93.39
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	93.24
COG3129	292	Predicted SAM-dependent methyltransferase [General	93.16
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	93.13
smart00440	40	ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding mo	93.02
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	93.0
COG1656	165	Uncharacterized conserved protein [Function unknow	92.98
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	92.86
KOG2671	421	consensus Putative RNA methylase [Replication, rec	92.81
PF09862	113	DUF2089: Protein of unknown function (DUF2089); In	92.58
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	92.45
PF03119	28	DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc f	92.39
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	92.24
PF13240	23	zinc_ribbon_2: zinc-ribbon domain	92.22
smart00661	52	RPOL9 RNA polymerase subunit 9.	92.2
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	92.16
PF07191	70	zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807	92.15
COG4306	160	Uncharacterized protein conserved in bacteria [Fun	92.15
PF01780	90	Ribosomal_L37ae: Ribosomal L37ae protein family; I	92.12
KOG2691	113	consensus RNA polymerase II subunit 9 [Transcripti	92.12
PF14353	128	CpXC: CpXC protein	92.1
PF04072	183	LCM: Leucine carboxyl methyltransferase; InterPro:	91.9
smart00659	44	RPOLCX RNA polymerase subunit CX. present in RNA p	91.84
PF06677	41	Auto_anti-p27: Sjogren's syndrome/scleroderma auto	91.64
COG1198	730	PriA Primosomal protein N' (replication factor Y)	91.56
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	91.49
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	91.33
PF01927	147	Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 T	90.95
PF03604	32	DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa	90.86
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	90.72
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	90.57
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	90.47
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	90.43
PTZ00357	1072	methyltransferase; Provisional	90.39
PF13248	26	zf-ribbon_3: zinc-ribbon domain	90.22
COG1255	129	Uncharacterized protein conserved in archaea [Func	90.19
TIGR00595	505	priA primosomal protein N'. All proteins in this f	90.18
COG1779	201	C4-type Zn-finger protein [General function predic	90.07
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	89.4
COG3809	88	Uncharacterized protein conserved in bacteria [Fun	89.26
PRK05580	679	primosome assembly protein PriA; Validated	89.15
PRK14873	665	primosome assembly protein PriA; Provisional	89.08
PTZ00255	90	60S ribosomal protein L37a; Provisional	89.07
PF14205	55	Cys_rich_KTR: Cysteine-rich KTR	89.02
COG1571	421	Predicted DNA-binding protein containing a Zn-ribb	89.01
PF07754	24	DUF1610: Domain of unknown function (DUF1610); Int	88.95
PF02150	35	RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; I	88.87
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	88.59
TIGR03655	53	anti_R_Lar restriction alleviation protein, Lar fa	88.52
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	88.47
PF03514	374	GRAS: GRAS domain family; InterPro: IPR005202 Sequ	88.35
COG1594	113	RPB9 DNA-directed RNA polymerase, subunit M/Transc	88.28
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	88.04
KOG2906	105	consensus RNA polymerase III subunit C11 [Transcri	88.03
PF14354	61	Lar_restr_allev: Restriction alleviation protein L	87.62
TIGR00280	91	L37a ribosomal protein L37a. This model finds euka	87.6
KOG2539	491	consensus Mitochondrial/chloroplast ribosome small	87.55
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	87.48
COG3677	129	Transposase and inactivated derivatives [DNA repli	87.46
PRK14890	59	putative Zn-ribbon RNA-binding protein; Provisiona	87.34
COG0777	294	AccD Acetyl-CoA carboxylase beta subunit [Lipid me	87.15
PRK03976	90	rpl37ae 50S ribosomal protein L37Ae; Reviewed	87.14
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	87.0
COG3877	122	Uncharacterized protein conserved in bacteria [Fun	86.9
COG4888	104	Uncharacterized Zn ribbon-containing protein [Gene	86.89
TIGR00244	147	transcriptional regulator NrdR. Members of this al	86.82
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	86.81
COG1568	354	Predicted methyltransferases [General function pre	86.8
PLN02668	386	indole-3-acetate carboxyl methyltransferase	86.8
PHA02998	195	RNA polymerase subunit; Provisional	86.72
COG1096	188	Predicted RNA-binding protein (consists of S1 doma	86.37
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	86.25
PF07282	69	OrfB_Zn_ribbon: Putative transposase DNA-binding d	86.1
COG1327	156	Predicted transcriptional regulator, consists of a	85.93
TIGR02300	129	FYDLN_acid conserved hypothetical protein TIGR0230	85.73
PRK14892	99	putative transcription elongation factor Elf1; Pro	85.67
COG4301	321	Uncharacterized conserved protein [Function unknow	85.6
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	85.59
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	85.58
PF05129	81	Elf1: Transcription elongation factor Elf1 like; I	85.46
PF12760	46	Zn_Tnp_IS1595: Transposase zinc-ribbon domain; Int	85.42
KOG2907	116	consensus RNA polymerase I transcription factor TF	85.11
PRK05978	148	hypothetical protein; Provisional	84.86
COG1326	201	Uncharacterized archaeal Zn-finger protein [Genera	84.74
TIGR01385	299	TFSII transcription elongation factor S-II. This m	84.54
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	84.34
COG5349	126	Uncharacterized protein conserved in bacteria [Fun	84.27
PHA02768	55	hypothetical protein; Provisional	84.24
TIGR01384	104	TFS_arch transcription factor S, archaeal. There h	84.17
KOG3507	62	consensus DNA-directed RNA polymerase, subunit RPB	84.11
TIGR01384	104	TFS_arch transcription factor S, archaeal. There h	84.02
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	83.85
PRK12495	226	hypothetical protein; Provisional	83.84
smart00531	147	TFIIE Transcription initiation factor IIE.	83.43
PF13453	41	zf-TFIIB: Transcription factor zinc-finger	83.22
PF12773	50	DZR: Double zinc ribbon	82.94
PRK06266	178	transcription initiation factor E subunit alpha; V	82.84
COG0863	302	DNA modification methylase [DNA replication, recom	82.8
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	82.28
PF09855	64	DUF2082: Nucleic-acid-binding protein containing Z	82.18
PF10083	158	DUF2321: Uncharacterized protein conserved in bact	81.77
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	81.61
PF08996	188	zf-DNA_Pol: DNA Polymerase alpha zinc finger; Inte	81.6
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	81.48
TIGR03831	46	YgiT_finger YgiT-type zinc finger domain. This dom	81.39
COG2824	112	PhnA Uncharacterized Zn-ribbon-containing protein	81.33
KOG2782	303	consensus Putative SAM dependent methyltransferase	80.8
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	80.53
PRK10458	467	DNA cytosine methylase; Provisional	80.51
PRK12380	113	hydrogenase nickel incorporation protein HybF; Pro	80.4
COG1996	49	RPC10 DNA-directed RNA polymerase, subunit RPC10 (	80.15

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.92  E-value=1.4e-24  Score=189.79  Aligned_cols=149  Identities=26%  Similarity=0.321  Sum_probs=127.6

Q ss_pred             eeeeccccCccCcCCCchhhhhhhcCchhhHHhHHhHHHhhhhCCCCCcHHHHHHHHHHhhccCCCeEEEEcCCcChHHH
Q 020988          103 YLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSR  182 (319)
Q Consensus       103 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~s~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~  182 (319)
                      .+.-++++.++.||..         |+++|++.++.|++.+.               ..+...+|.+|||||||||.++.
T Consensus        12 ~v~~vF~~ia~~YD~~---------n~~~S~g~~~~Wr~~~i---------------~~~~~~~g~~vLDva~GTGd~a~   67 (238)
T COG2226          12 KVQKVFDKVAKKYDLM---------NDLMSFGLHRLWRRALI---------------SLLGIKPGDKVLDVACGTGDMAL   67 (238)
T ss_pred             HHHHHHHhhHHHHHhh---------cccccCcchHHHHHHHH---------------HhhCCCCCCEEEEecCCccHHHH
Confidence            3444555666677743         78899999999997543               34444489999999999999999


Q ss_pred             HHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecccccCCCCHHHHHHHHHH
Q 020988          183 KFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAASVFSS  262 (319)
Q Consensus       183 ~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~el~r  262 (319)
                      .+++.....+|+|+|+|++|++.|+++....+   ..++.|+.+|+++|||++++||+|++.++|++++|++.+|+|+.|
T Consensus        68 ~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~---~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~R  144 (238)
T COG2226          68 LLAKSVGTGEVVGLDISESMLEVAREKLKKKG---VQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYR  144 (238)
T ss_pred             HHHHhcCCceEEEEECCHHHHHHHHHHhhccC---ccceEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHH
Confidence            99999767899999999999999999998753   334999999999999999999999999999999999999999999


Q ss_pred             hhcCCCeeEEEEeecc
Q 020988          263 SYSLLSICYLLQFRYT  278 (319)
Q Consensus       263 vlk~g~~~g~~~~~~~  278 (319)
                      ||||||...++-|...
T Consensus       145 VlKpgG~~~vle~~~p  160 (238)
T COG2226         145 VLKPGGRLLVLEFSKP  160 (238)
T ss_pred             hhcCCeEEEEEEcCCC
Confidence            9999999998888443

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.90  E-value=3.5e-23  Score=187.41  Aligned_cols=174  Identities=20%  Similarity=0.374  Sum_probs=127.9

Q ss_pred             eeeccCCCccccccCCCCCcccceecCceeeCccCCcc-ccCCceeeeccccCcc----CcCCCchhhhhhhcCchhhHH
Q 020988           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY-SSKDNYLDLTVISGLK----DYTEVKPASTELFRSPFVSFL  134 (319)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f-~~~~g~~~~~~~~~~~----~y~~~~~~~~~~~~~~~~s~~  134 (319)
                      +|+||+|+++|....           ..++|++ ||.| ..++||+++++.+...    .|+      ++++..      
T Consensus         2 ~~~CP~C~~~l~~~~-----------~~~~C~~-~h~fd~a~~Gy~~ll~~~~~~~~~~~d~------~~~~~a------   57 (272)
T PRK11088          2 SYQCPLCHQPLTLEE-----------NSWICPQ-NHQFDCAKEGYVNLLPVQHKRSKDPGDN------KEMMQA------   57 (272)
T ss_pred             cccCCCCCcchhcCC-----------CEEEcCC-CCCCccccCceEEeccccccCCCCCCcC------HHHHHH------
Confidence            489999999996543           5699998 9999 8889999999753332    233      344432      


Q ss_pred             hHHhHHHhhhhCCCCCcHHH--HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCC---CeEEEEeCCHHHHHHHHHH
Q 020988          135 YERGWRQNFNRSGFPGPDEE--FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY---SGVVALDFSENMLRQCYDF  209 (319)
Q Consensus       135 ~~~~w~~~~~~~~~~~~~~~--~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~---~~v~gvD~s~~~l~~a~~~  209 (319)
                           ++.+.+.|++.+...  .+.+.+.+. .++.+|||||||+|.++..+++..+.   ..++|+|+|+.+++.|+++
T Consensus        58 -----r~~fl~~g~y~~l~~~i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~  131 (272)
T PRK11088         58 -----RRAFLDAGHYQPLRDAVANLLAERLD-EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR  131 (272)
T ss_pred             -----HHHHHHCCChHHHHHHHHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh
Confidence                 344444555543322  233333332 35578999999999999999876542   3789999999999999876


Q ss_pred             HhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEeecc
Q 020988          210 IKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFRYT  278 (319)
Q Consensus       210 ~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~~~  278 (319)
                      .        +++.+.++|+.++|+++++||+|++..+.       ..++++.|+|||+|.+..+.....
T Consensus       132 ~--------~~~~~~~~d~~~lp~~~~sfD~I~~~~~~-------~~~~e~~rvLkpgG~li~~~p~~~  185 (272)
T PRK11088        132 Y--------PQVTFCVASSHRLPFADQSLDAIIRIYAP-------CKAEELARVVKPGGIVITVTPGPR  185 (272)
T ss_pred             C--------CCCeEEEeecccCCCcCCceeEEEEecCC-------CCHHHHHhhccCCCEEEEEeCCCc
Confidence            3        47889999999999999999999986541       236789999999998877665433

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.90  E-value=1.9e-23  Score=184.13  Aligned_cols=151  Identities=25%  Similarity=0.412  Sum_probs=91.2

Q ss_pred             CceeeeccccCccCcCCCchhhhhhhcCchhhHHhHHhHHHhhhhCCCCCcHHHHHHHHHHhhccCCCeEEEEcCCcChH
Q 020988          101 DNYLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLF  180 (319)
Q Consensus       101 ~g~~~~~~~~~~~~y~~~~~~~~~~~~~~~~s~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~  180 (319)
                      +.++.-+++..++.||..         |..++++.++.|++...               +.+...++.+|||+|||||.+
T Consensus         6 ~~~v~~~Fd~ia~~YD~~---------n~~ls~g~~~~wr~~~~---------------~~~~~~~g~~vLDv~~GtG~~   61 (233)
T PF01209_consen    6 EQYVRKMFDRIAPRYDRM---------NDLLSFGQDRRWRRKLI---------------KLLGLRPGDRVLDVACGTGDV   61 (233)
T ss_dssp             ----------------------------------------SHHH---------------HHHT--S--EEEEET-TTSHH
T ss_pred             HHHHHHHHHHHHHHhCCC---------ccccCCcHHHHHHHHHH---------------hccCCCCCCEEEEeCCChHHH
Confidence            344556667777888843         67889999999997433               345667889999999999999


Q ss_pred             HHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecccccCCCCHHHHHHH
Q 020988          181 SRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAASV  259 (319)
Q Consensus       181 ~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~e  259 (319)
                      +..+++. ++..+|+|+|+|++|++.|+++.+..+   ..+++++++|++++|+++++||+|++.+++++++|+.++++|
T Consensus        62 ~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~---~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E  138 (233)
T PF01209_consen   62 TRELARRVGPNGKVVGVDISPGMLEVARKKLKREG---LQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALRE  138 (233)
T ss_dssp             HHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT-----SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHH
T ss_pred             HHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhC---CCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHH
Confidence            9999886 456799999999999999999988752   449999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCeeEEEEeecc
Q 020988          260 FSSSYSLLSICYLLQFRYT  278 (319)
Q Consensus       260 l~rvlk~g~~~g~~~~~~~  278 (319)
                      ++|+|||||...++.+...
T Consensus       139 ~~RVLkPGG~l~ile~~~p  157 (233)
T PF01209_consen  139 MYRVLKPGGRLVILEFSKP  157 (233)
T ss_dssp             HHHHEEEEEEEEEEEEEB-
T ss_pred             HHHHcCCCeEEEEeeccCC
Confidence            9999999999999988544

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.85  E-value=7.9e-21  Score=163.71  Aligned_cols=152  Identities=20%  Similarity=0.193  Sum_probs=129.2

Q ss_pred             CceeeeccccCccCcCCCchhhhhhhcCchhhHHhHHhHHHhhhhCCCCCcHHHHHHHHHHhhccCCCeEEEEcCCcChH
Q 020988          101 DNYLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLF  180 (319)
Q Consensus       101 ~g~~~~~~~~~~~~y~~~~~~~~~~~~~~~~s~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~  180 (319)
                      +..+.-+++.....||.+         |+.++.+.++.|++.+               ...+.+.++.++||++||||..
T Consensus        59 e~~V~~vF~~vA~~YD~m---------ND~mSlGiHRlWKd~~---------------v~~L~p~~~m~~lDvaGGTGDi  114 (296)
T KOG1540|consen   59 ERLVHHVFESVAKKYDIM---------NDAMSLGIHRLWKDMF---------------VSKLGPGKGMKVLDVAGGTGDI  114 (296)
T ss_pred             hhHHHHHHHHHHHHHHHH---------HHHhhcchhHHHHHHh---------------hhccCCCCCCeEEEecCCcchh
Confidence            334444555566667743         6788999999998654               4577788899999999999999


Q ss_pred             HHHHHhhCCC------CeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecccccCCCCHH
Q 020988          181 SRKFAKSGTY------SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPS  254 (319)
Q Consensus       181 ~~~l~~~g~~------~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~  254 (319)
                      +..+.+....      .+|+++|++++|+..++++.++.+......+.|+.+|+++|||++.+||..++.+.|.+++|++
T Consensus       115 aFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~  194 (296)
T KOG1540|consen  115 AFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQ  194 (296)
T ss_pred             HHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHH
Confidence            9999888654      7899999999999999999876543344559999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCeeEEEEee
Q 020988          255 NAASVFSSSYSLLSICYLLQFR  276 (319)
Q Consensus       255 ~~l~el~rvlk~g~~~g~~~~~  276 (319)
                      +.++|++|||||||.+.++.|+
T Consensus       195 k~l~EAYRVLKpGGrf~cLeFs  216 (296)
T KOG1540|consen  195 KALREAYRVLKPGGRFSCLEFS  216 (296)
T ss_pred             HHHHHHHHhcCCCcEEEEEEcc
Confidence            9999999999999999999994

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.83  E-value=6e-20  Score=165.10  Aligned_cols=117  Identities=22%  Similarity=0.315  Sum_probs=99.8

Q ss_pred             HHhhccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCc
Q 020988          160 EYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFV  238 (319)
Q Consensus       160 ~~l~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~f  238 (319)
                      +.+...++.+|||||||+|.++..+++. ++..+|+|+|+|++|++.|+++..........+++++++|++++|+++++|
T Consensus        67 ~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sf  146 (261)
T PLN02233         67 SWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYF  146 (261)
T ss_pred             HHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCE
Confidence            3455567889999999999999988876 455699999999999999988753211112358999999999999999999


Q ss_pred             cEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988          239 DAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFR  276 (319)
Q Consensus       239 D~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~  276 (319)
                      |+|++.++++|++|+..+++|+.|+|||||.+.++.+.
T Consensus       147 D~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~  184 (261)
T PLN02233        147 DAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFN  184 (261)
T ss_pred             eEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence            99999999999999999999999999999998888774

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.77  E-value=3e-18  Score=129.20  Aligned_cols=94  Identities=27%  Similarity=0.406  Sum_probs=82.4

Q ss_pred             EEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecccccCC
Q 020988          171 VDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCW  250 (319)
Q Consensus       171 LDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~  250 (319)
                      ||+|||+|.++..+++. +..+++|+|+++.+++.++++...      .++.+..+|++++|+++++||+|++.++++|+
T Consensus         1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~------~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~   73 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKN------EGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL   73 (95)
T ss_dssp             EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTT------STEEEEESBTTSSSS-TT-EEEEEEESHGGGS
T ss_pred             CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccc------cCchheeehHHhCccccccccccccccceeec
Confidence            89999999999999998 445999999999999999998754      46779999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHhhcCCCeeE
Q 020988          251 PSPSNAASVFSSSYSLLSICY  271 (319)
Q Consensus       251 ~d~~~~l~el~rvlk~g~~~g  271 (319)
                      +++..+++++.|+|||+|...
T Consensus        74 ~~~~~~l~e~~rvLk~gG~l~   94 (95)
T PF08241_consen   74 EDPEAALREIYRVLKPGGRLV   94 (95)
T ss_dssp             SHHHHHHHHHHHHEEEEEEEE
T ss_pred             cCHHHHHHHHHHHcCcCeEEe
Confidence            999999999999999988653

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK05785 hypothetical protein; Provisional

Probab=99.77  E-value=2.4e-18  Score=151.43  Aligned_cols=96  Identities=27%  Similarity=0.270  Sum_probs=84.2

Q ss_pred             CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecc
Q 020988          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (319)
Q Consensus       166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (319)
                      ++.+|||||||||.++..+++.. ..+|+|+|+|++|++.|+++.           .++++|++.+|+++++||+|++..
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~-----------~~~~~d~~~lp~~d~sfD~v~~~~  118 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVAD-----------DKVVGSFEALPFRDKSFDVVMSSF  118 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhcc-----------ceEEechhhCCCCCCCEEEEEecC
Confidence            47899999999999999999884 349999999999999998641           357899999999999999999999


Q ss_pred             cccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          246 ALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       246 vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      +++|++|++.+++|++|++||  ..+++.+
T Consensus       119 ~l~~~~d~~~~l~e~~RvLkp--~~~ile~  146 (226)
T PRK05785        119 ALHASDNIEKVIAEFTRVSRK--QVGFIAM  146 (226)
T ss_pred             hhhccCCHHHHHHHHHHHhcC--ceEEEEe
Confidence            999999999999999999998  3445544

>PLN02244 tocopherol O-methyltransferase

Probab=99.75  E-value=2.8e-17  Score=153.24  Aligned_cols=108  Identities=19%  Similarity=0.221  Sum_probs=96.0

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (319)
                      .++.+|||||||+|.++..+++.. ..+|+|+|+|+.+++.++++....+  ...++.++++|+.++|+++++||+|++.
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g--~~~~v~~~~~D~~~~~~~~~~FD~V~s~  193 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQG--LSDKVSFQVADALNQPFEDGQFDLVWSM  193 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcC--CCCceEEEEcCcccCCCCCCCccEEEEC
Confidence            567899999999999999999874 3599999999999999999876642  2357999999999999999999999999


Q ss_pred             ccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          245 AALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       245 ~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      .+++|++|+..+++++.|+|||||.+.+..+
T Consensus       194 ~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~  224 (340)
T PLN02244        194 ESGEHMPDKRKFVQELARVAAPGGRIIIVTW  224 (340)
T ss_pred             CchhccCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence            9999999999999999999999998776654

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.73  E-value=4.1e-17  Score=144.06  Aligned_cols=116  Identities=26%  Similarity=0.303  Sum_probs=99.4

Q ss_pred             HHHHHhhccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (319)
Q Consensus       157 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (319)
                      .+...+...++.+|||+|||+|.++..+++. ++..+|+|+|+|+.+++.+++++...   ...++.++.+|+.++++++
T Consensus        36 ~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~---~~~~v~~~~~d~~~~~~~~  112 (231)
T TIGR02752        36 DTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDA---GLHNVELVHGNAMELPFDD  112 (231)
T ss_pred             HHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhc---CCCceEEEEechhcCCCCC
Confidence            3444566677899999999999999999876 45569999999999999999988654   2457999999999988888


Q ss_pred             CCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          236 GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      ++||+|++..+++|++++..+++++.++|+|+|...++..
T Consensus       113 ~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~  152 (231)
T TIGR02752       113 NSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLET  152 (231)
T ss_pred             CCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence            9999999999999999999999999999999987765444

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.73  E-value=8.7e-18  Score=144.94  Aligned_cols=105  Identities=25%  Similarity=0.314  Sum_probs=92.4

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (319)
                      .++.+|||||||-|.++..+++.|.  +|+|+|+++.+++.|+.+..+.    .-.+++.+..++++....++||+|+|.
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~Ga--~VtgiD~se~~I~~Ak~ha~e~----gv~i~y~~~~~edl~~~~~~FDvV~cm  131 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARLGA--SVTGIDASEKPIEVAKLHALES----GVNIDYRQATVEDLASAGGQFDVVTCM  131 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHCCC--eeEEecCChHHHHHHHHhhhhc----cccccchhhhHHHHHhcCCCccEEEEh
Confidence            4789999999999999999999997  9999999999999999988764    344668888888887666899999999


Q ss_pred             ccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          245 AALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       245 ~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      .||||++||+.+++.+.+++||+|....-.+
T Consensus       132 EVlEHv~dp~~~~~~c~~lvkP~G~lf~STi  162 (243)
T COG2227         132 EVLEHVPDPESFLRACAKLVKPGGILFLSTI  162 (243)
T ss_pred             hHHHccCCHHHHHHHHHHHcCCCcEEEEecc
Confidence            9999999999999999999999976655444

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.71  E-value=1.2e-16  Score=132.12  Aligned_cols=108  Identities=19%  Similarity=0.325  Sum_probs=93.9

Q ss_pred             cCCCeEEEEcCCcChHHHHHH-hhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC--CCCCCccEE
Q 020988          165 AQGGLLVDVSCGSGLFSRKFA-KSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAV  241 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~-~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~V  241 (319)
                      ..+.+|||+|||+|.++..++ +.++..+++|+|+|+.+++.|+++++..+   ..+++++++|+.+++  ++ +.||+|
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~---~~ni~~~~~d~~~l~~~~~-~~~D~I   77 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG---LDNIEFIQGDIEDLPQELE-EKFDII   77 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT---STTEEEEESBTTCGCGCSS-TTEEEE
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc---ccccceEEeehhccccccC-CCeeEE
Confidence            357899999999999999999 45667799999999999999999887753   458999999999987  55 799999


Q ss_pred             EecccccCCCCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988          242 HAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFR  276 (319)
Q Consensus       242 ~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~  276 (319)
                      ++..+++|+.++...++++.++++++|...+..+.
T Consensus        78 ~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   78 ISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             EEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence            99999999999999999999999998877666554

...

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.71  E-value=7.3e-17  Score=148.43  Aligned_cols=107  Identities=20%  Similarity=0.249  Sum_probs=93.0

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (319)
                      .++.+|||||||+|.++..+++.+.  +|+|+|+++.+++.|+++....+  ...++.++++|++++++.+++||+|++.
T Consensus       130 ~~g~~ILDIGCG~G~~s~~La~~g~--~V~GID~s~~~i~~Ar~~~~~~~--~~~~i~~~~~dae~l~~~~~~FD~Vi~~  205 (322)
T PLN02396        130 FEGLKFIDIGCGGGLLSEPLARMGA--TVTGVDAVDKNVKIARLHADMDP--VTSTIEYLCTTAEKLADEGRKFDAVLSL  205 (322)
T ss_pred             CCCCEEEEeeCCCCHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--cccceeEEecCHHHhhhccCCCCEEEEh
Confidence            3567999999999999999988765  99999999999999998764421  1247899999999998878899999999


Q ss_pred             ccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          245 AALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       245 ~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      ++|||++|+..+++++.++|||+|...+..+
T Consensus       206 ~vLeHv~d~~~~L~~l~r~LkPGG~liist~  236 (322)
T PLN02396        206 EVIEHVANPAEFCKSLSALTIPNGATVLSTI  236 (322)
T ss_pred             hHHHhcCCHHHHHHHHHHHcCCCcEEEEEEC
Confidence            9999999999999999999999987766654

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.70  E-value=1.3e-16  Score=143.09  Aligned_cols=107  Identities=20%  Similarity=0.170  Sum_probs=92.9

Q ss_pred             HHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCC
Q 020988          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (319)
Q Consensus       157 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~  236 (319)
                      .+.+.+...++.+|||||||+|.++..+++..+..+|+|+|+|+.|++.|+++          +++++++|+.+++ .++
T Consensus        20 ~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~----------~~~~~~~d~~~~~-~~~   88 (255)
T PRK14103         20 DLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER----------GVDARTGDVRDWK-PKP   88 (255)
T ss_pred             HHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc----------CCcEEEcChhhCC-CCC
Confidence            44555666678999999999999999999987667999999999999999763          5789999998875 467


Q ss_pred             CccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEE
Q 020988          237 FVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQ  274 (319)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~  274 (319)
                      +||+|++..++||++++..+++++.++|||||.+.+.+
T Consensus        89 ~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~  126 (255)
T PRK14103         89 DTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQV  126 (255)
T ss_pred             CceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEc
Confidence            99999999999999999999999999999998776554

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.70  E-value=1.4e-16  Score=142.97  Aligned_cols=108  Identities=17%  Similarity=0.212  Sum_probs=94.7

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-CCCCCccEEEe
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDAVHA  243 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~V~~  243 (319)
                      .++.+|||+|||+|.++..+++.+.  +|+|+|+|+.|++.|+++....+  ...+++++++|+.+++ +.+++||+|++
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~g~--~v~~vD~s~~~l~~a~~~~~~~g--~~~~v~~~~~d~~~l~~~~~~~fD~V~~  118 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAELGH--QVILCDLSAEMIQRAKQAAEAKG--VSDNMQFIHCAAQDIAQHLETPVDLILF  118 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC--CccceEEEEcCHHHHhhhcCCCCCEEEe
Confidence            4568999999999999999999876  99999999999999999887642  2357899999998764 55789999999


Q ss_pred             cccccCCCCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988          244 GAALHCWPSPSNAASVFSSSYSLLSICYLLQFR  276 (319)
Q Consensus       244 ~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~  276 (319)
                      ..+++|+.++..+++++.++|||+|.+.++.+.
T Consensus       119 ~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n  151 (255)
T PRK11036        119 HAVLEWVADPKSVLQTLWSVLRPGGALSLMFYN  151 (255)
T ss_pred             hhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEEC
Confidence            999999999999999999999999998776654

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.68  E-value=6e-16  Score=138.43  Aligned_cols=111  Identities=21%  Similarity=0.233  Sum_probs=95.4

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (319)
                      +.+.+.+...++.+|||+|||+|.++..+.+.+.  +++|+|+|+.|++.++++..        ...++++|++.+|+++
T Consensus        32 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~~D~s~~~l~~a~~~~~--------~~~~~~~d~~~~~~~~  101 (251)
T PRK10258         32 DALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGS--QVTALDLSPPMLAQARQKDA--------ADHYLAGDIESLPLAT  101 (251)
T ss_pred             HHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhCC--------CCCEEEcCcccCcCCC
Confidence            4555556555678999999999999999988765  99999999999999998742        3468899999999988


Q ss_pred             CCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988          236 GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFR  276 (319)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~  276 (319)
                      ++||+|+++.+++|.+|+..+++++.++|+|+|.+.+..+.
T Consensus       102 ~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~  142 (251)
T PRK10258        102 ATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLV  142 (251)
T ss_pred             CcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            99999999999999999999999999999999887766553

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.68  E-value=8.9e-16  Score=138.22  Aligned_cols=117  Identities=11%  Similarity=0.083  Sum_probs=99.6

Q ss_pred             HHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC
Q 020988          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (319)
Q Consensus       153 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (319)
                      +..+.+...+...++.+|||||||+|..+..+++.. ..+|+|+|+|+.+++.|+++...     ..++.+..+|+...|
T Consensus        39 ~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~-----~~~i~~~~~D~~~~~  112 (263)
T PTZ00098         39 EATTKILSDIELNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD-----KNKIEFEANDILKKD  112 (263)
T ss_pred             HHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc-----CCceEEEECCcccCC
Confidence            345666667777889999999999999998887653 35999999999999999988643     257999999999989


Q ss_pred             CCCCCccEEEecccccCCC--CHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          233 FASGFVDAVHAGAALHCWP--SPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~--d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      +++++||+|++..+++|++  ++..+++++.++|||+|.+.+..+
T Consensus       113 ~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~  157 (263)
T PTZ00098        113 FPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDY  157 (263)
T ss_pred             CCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            9889999999999999987  788999999999999998776554

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.66  E-value=1.5e-15  Score=140.47  Aligned_cols=113  Identities=20%  Similarity=0.186  Sum_probs=92.8

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (319)
                      +.+...+...++.+|||||||+|.++..+++.++ ..|+|+|+|+.++..++......+  ...++.++.+|++++|+ +
T Consensus       112 ~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~-~~V~GiD~S~~~l~q~~a~~~~~~--~~~~i~~~~~d~e~lp~-~  187 (322)
T PRK15068        112 DRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGA-KLVVGIDPSQLFLCQFEAVRKLLG--NDQRAHLLPLGIEQLPA-L  187 (322)
T ss_pred             HHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHhcC--CCCCeEEEeCCHHHCCC-c
Confidence            4556666666789999999999999999999875 369999999999876543322110  13479999999999998 7


Q ss_pred             CCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEE
Q 020988          236 GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYL  272 (319)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~  272 (319)
                      ++||+|++.++++|..|+..++++++++|+|||.+.+
T Consensus       188 ~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl  224 (322)
T PRK15068        188 KAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVL  224 (322)
T ss_pred             CCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEE
Confidence            8999999999999999999999999999999887643

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.66  E-value=2.1e-15  Score=130.06  Aligned_cols=111  Identities=20%  Similarity=0.193  Sum_probs=92.2

Q ss_pred             HHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCC
Q 020988          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (319)
Q Consensus       157 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~  236 (319)
                      .+.+.+...++.+|||+|||+|.++..+++.+.  +|+|+|+|+.+++.++++....+   ..++++..+|+.++++. +
T Consensus        21 ~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~g~--~V~gvD~S~~~i~~a~~~~~~~~---~~~v~~~~~d~~~~~~~-~   94 (197)
T PRK11207         21 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGF--DVTAWDKNPMSIANLERIKAAEN---LDNLHTAVVDLNNLTFD-G   94 (197)
T ss_pred             HHHHhcccCCCCcEEEECCCCCHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHcC---CCcceEEecChhhCCcC-C
Confidence            444555556778999999999999999999876  99999999999999999877652   34688999999888774 6


Q ss_pred             CccEEEecccccCCC--CHHHHHHHHHHhhcCCCeeEEE
Q 020988          237 FVDAVHAGAALHCWP--SPSNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       237 ~fD~V~~~~vl~h~~--d~~~~l~el~rvlk~g~~~g~~  273 (319)
                      +||+|++..+++|++  +...+++++.++|+|+|..-++
T Consensus        95 ~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~  133 (197)
T PRK11207         95 EYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV  133 (197)
T ss_pred             CcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            799999999999886  3568899999999999875443

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.65  E-value=1.8e-15  Score=118.07  Aligned_cols=104  Identities=22%  Similarity=0.276  Sum_probs=80.9

Q ss_pred             CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCC-CCCCCCCCCccEEEec
Q 020988          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CRLPFASGFVDAVHAG  244 (319)
Q Consensus       166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~-~~lp~~~~~fD~V~~~  244 (319)
                      |+.+|||||||+|.++..+++..+..+|+|+|+|+.+++.|+++....+  ...+++++++|+ ..... .+.||+|++.
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~~~-~~~~D~v~~~   77 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEG--LSDRITFVQGDAEFDPDF-LEPFDLVICS   77 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTT--TTTTEEEEESCCHGGTTT-SSCEEEEEEC
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC--CCCCeEEEECccccCccc-CCCCCEEEEC
Confidence            5789999999999999999996556799999999999999999984422  468999999999 33443 3579999999


Q ss_pred             c-cccCCCC---HHHHHHHHHHhhcCCCeeEEEEe
Q 020988          245 A-ALHCWPS---PSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       245 ~-vl~h~~d---~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      . +++++.+   ..++++.+.+.|+|+   |.+++
T Consensus        78 ~~~~~~~~~~~~~~~~l~~~~~~L~pg---G~lvi  109 (112)
T PF12847_consen   78 GFTLHFLLPLDERRRVLERIRRLLKPG---GRLVI  109 (112)
T ss_dssp             SGSGGGCCHHHHHHHHHHHHHHHEEEE---EEEEE
T ss_pred             CCccccccchhHHHHHHHHHHHhcCCC---cEEEE
Confidence            9 5565543   456677777776664   45544

...

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.64  E-value=2.7e-15  Score=134.74  Aligned_cols=110  Identities=16%  Similarity=0.195  Sum_probs=93.8

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (319)
                      +.+...+...++.+|||||||+|.++..+++..+..+|+|+|+|+.|++.|+++.        .++.++.+|+..+. .+
T Consensus        21 ~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~--------~~~~~~~~d~~~~~-~~   91 (258)
T PRK01683         21 RDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL--------PDCQFVEADIASWQ-PP   91 (258)
T ss_pred             HHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC--------CCCeEEECchhccC-CC
Confidence            3444555566789999999999999999998876779999999999999999864        46889999998765 34


Q ss_pred             CCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEE
Q 020988          236 GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQ  274 (319)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~  274 (319)
                      ++||+|+++.+++|++|+..+++++.++|||||.+.+.+
T Consensus        92 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~  130 (258)
T PRK01683         92 QALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQM  130 (258)
T ss_pred             CCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEEC
Confidence            699999999999999999999999999999998765543

>TIGR00452 methyltransferase, putative

Probab=99.64  E-value=4.8e-15  Score=135.90  Aligned_cols=115  Identities=18%  Similarity=0.133  Sum_probs=91.7

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (319)
                      ..+...+...++.+|||||||+|.++..++..++ ..|+|+|+|+.|+..++...+..  ....++.+..++++++|.. 
T Consensus       111 ~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~~~~~~~--~~~~~v~~~~~~ie~lp~~-  186 (314)
T TIGR00452       111 DRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQFEAVRKLL--DNDKRAILEPLGIEQLHEL-  186 (314)
T ss_pred             HHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHHh--ccCCCeEEEECCHHHCCCC-
Confidence            4455556667789999999999999998888875 47999999999987653321110  0135788888999988864 


Q ss_pred             CCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEE
Q 020988          236 GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQ  274 (319)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~  274 (319)
                      .+||+|++.++++|++++..++++++++|||||.+.+-.
T Consensus       187 ~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvlet  225 (314)
T TIGR00452       187 YAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLET  225 (314)
T ss_pred             CCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEE
Confidence            589999999999999999999999999999998876543

Known examples to date are restricted to the proteobacteria.

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.63  E-value=2.6e-15  Score=125.87  Aligned_cols=114  Identities=18%  Similarity=0.165  Sum_probs=95.2

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeE-EEEcCCCCCC-C
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLA-LVRADVCRLP-F  233 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~-~~~~d~~~lp-~  233 (319)
                      ..+..++.......|||||||||..-.. ...-+..+|+++|+++.|-+.+.+.+.++   ...++. |+.++.+++| +
T Consensus        66 s~i~~~~gk~~K~~vLEvgcGtG~Nfkf-y~~~p~~svt~lDpn~~mee~~~ks~~E~---k~~~~~~fvva~ge~l~~l  141 (252)
T KOG4300|consen   66 SGIYYFLGKSGKGDVLEVGCGTGANFKF-YPWKPINSVTCLDPNEKMEEIADKSAAEK---KPLQVERFVVADGENLPQL  141 (252)
T ss_pred             hhhHHHhcccCccceEEecccCCCCccc-ccCCCCceEEEeCCcHHHHHHHHHHHhhc---cCcceEEEEeechhcCccc
Confidence            3444455555667889999999998443 34346779999999999999999988776   456776 9999999998 8


Q ss_pred             CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988          234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~  273 (319)
                      +++++|+|++..+|+.+.|+.+.++++.|+|||+|....+
T Consensus       142 ~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifi  181 (252)
T KOG4300|consen  142 ADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFI  181 (252)
T ss_pred             ccCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEE
Confidence            8999999999999999999999999999999999876554

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.63  E-value=5.6e-16  Score=134.71  Aligned_cols=103  Identities=26%  Similarity=0.406  Sum_probs=87.2

Q ss_pred             CCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCC----CeEEEEcCCCCCCCCCCCccEEE
Q 020988          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTS----NLALVRADVCRLPFASGFVDAVH  242 (319)
Q Consensus       167 ~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~----~i~~~~~d~~~lp~~~~~fD~V~  242 (319)
                      +.+|||+|||+|.++..|++.|.  +|+|+|+++.|++.|+++ +..++....    ++.+.+.|++.+.   +.||+|+
T Consensus        90 g~~ilDvGCGgGLLSepLArlga--~V~GID~s~~~V~vA~~h-~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVv  163 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLGA--QVTGIDASDDMVEVANEH-KKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVV  163 (282)
T ss_pred             CceEEEeccCccccchhhHhhCC--eeEeecccHHHHHHHHHh-hhcCchhccccceeeehhhcchhhcc---cccceee
Confidence            47899999999999999999987  999999999999999998 444333333    3566677777653   5699999


Q ss_pred             ecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          243 AGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       243 ~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      |..++||+.||...+.-+.+++||+|+..+-.+
T Consensus       164 csevleHV~dp~~~l~~l~~~lkP~G~lfitti  196 (282)
T KOG1270|consen  164 CSEVLEHVKDPQEFLNCLSALLKPNGRLFITTI  196 (282)
T ss_pred             eHHHHHHHhCHHHHHHHHHHHhCCCCceEeeeh
Confidence            999999999999999999999999987776554

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.63  E-value=7.9e-16  Score=118.27  Aligned_cols=95  Identities=25%  Similarity=0.384  Sum_probs=76.1

Q ss_pred             EEEEcCCcChHHHHHHhhC---CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec-c
Q 020988          170 LVDVSCGSGLFSRKFAKSG---TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG-A  245 (319)
Q Consensus       170 VLDiGcG~G~~~~~l~~~g---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~-~  245 (319)
                      |||+|||+|..+..+.+..   +..+++|+|+|++|++.++++....    ..+++++++|+.++++.+++||+|++. .
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~----~~~~~~~~~D~~~l~~~~~~~D~v~~~~~   76 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED----GPKVRFVQADARDLPFSDGKFDLVVCSGL   76 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT----TTTSEEEESCTTCHHHHSSSEEEEEE-TT
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc----CCceEEEECCHhHCcccCCCeeEEEEcCC
Confidence            7999999999999999884   3469999999999999999998764    348999999999999888999999995 5


Q ss_pred             cccCCCCH--HHHHHHHHHhhcCCC
Q 020988          246 ALHCWPSP--SNAASVFSSSYSLLS  268 (319)
Q Consensus       246 vl~h~~d~--~~~l~el~rvlk~g~  268 (319)
                      +++|+.+.  ..+++++.+++||+|
T Consensus        77 ~~~~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   77 SLHHLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             GGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             ccCCCCHHHHHHHHHHHHHHhCCCC
Confidence            69998543  466777777777764

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.62  E-value=4.1e-15  Score=137.46  Aligned_cols=103  Identities=19%  Similarity=0.298  Sum_probs=91.6

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (319)
                      .++.+|||||||+|.++..+++..+..+++++|+|++|++.|+++...      .++.++.+|++++++++++||+|++.
T Consensus       112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~------~~i~~i~gD~e~lp~~~~sFDvVIs~  185 (340)
T PLN02490        112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL------KECKIIEGDAEDLPFPTDYADRYVSA  185 (340)
T ss_pred             CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc------cCCeEEeccHHhCCCCCCceeEEEEc
Confidence            457899999999999998888775556899999999999999987532      47889999999999988999999999


Q ss_pred             ccccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988          245 AALHCWPSPSNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       245 ~vl~h~~d~~~~l~el~rvlk~g~~~g~~  273 (319)
                      .+++|++++...++++.++|+|+|...++
T Consensus       186 ~~L~~~~d~~~~L~e~~rvLkPGG~LvIi  214 (340)
T PLN02490        186 GSIEYWPDPQRGIKEAYRVLKIGGKACLI  214 (340)
T ss_pred             ChhhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence            99999999999999999999999987654

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.62  E-value=5.6e-15  Score=131.81  Aligned_cols=118  Identities=16%  Similarity=0.082  Sum_probs=102.2

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (319)
                      .+.+.+.+...+|++|||||||.|.++..+++.. +.+|+|+++|+++.+.+++++...+  ...+++++..|..+++  
T Consensus        61 ~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~g--l~~~v~v~l~d~rd~~--  135 (283)
T COG2230          61 LDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARG--LEDNVEVRLQDYRDFE--  135 (283)
T ss_pred             HHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcC--CCcccEEEeccccccc--
Confidence            4566777788999999999999999999999985 5799999999999999999998875  3358899998988775  


Q ss_pred             CCCccEEEecccccCCCC--HHHHHHHHHHhhcCCCeeEEEEeecc
Q 020988          235 SGFVDAVHAGAALHCWPS--PSNAASVFSSSYSLLSICYLLQFRYT  278 (319)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d--~~~~l~el~rvlk~g~~~g~~~~~~~  278 (319)
                       +.||.|++.+++||+..  ....++.+.++|+|+|...+..+...
T Consensus       136 -e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~  180 (283)
T COG2230         136 -EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGP  180 (283)
T ss_pred             -cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCC
Confidence             45999999999999976  77899999999999998888877433

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.62  E-value=4.7e-17  Score=124.56  Aligned_cols=97  Identities=21%  Similarity=0.216  Sum_probs=64.9

Q ss_pred             EEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC--CCCCCccEEEeccccc
Q 020988          171 VDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVHAGAALH  248 (319)
Q Consensus       171 LDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~V~~~~vl~  248 (319)
                      ||||||+|.++..+.+..+..+++|+|+|+.|++.+++++....   ..+...+..+..+..  ...++||+|++.+++|
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~   77 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELG---NDNFERLRFDVLDLFDYDPPESFDLVVASNVLH   77 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT------EEEEE--SSS---CCC----SEEEEE-TTS
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC---CcceeEEEeecCChhhcccccccceehhhhhHh
Confidence            79999999999999999777799999999999999988887742   223334443333321  1125999999999999


Q ss_pred             CCCCHHHHHHHHHHhhcCCCee
Q 020988          249 CWPSPSNAASVFSSSYSLLSIC  270 (319)
Q Consensus       249 h~~d~~~~l~el~rvlk~g~~~  270 (319)
                      |++++...++.+.++|+|+|.+
T Consensus        78 ~l~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   78 HLEDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             --S-HHHHHHHHTTT-TSS-EE
T ss_pred             hhhhHHHHHHHHHHHcCCCCCC
Confidence            9999999999999999999853

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.62  E-value=1e-14  Score=142.17  Aligned_cols=116  Identities=16%  Similarity=0.131  Sum_probs=98.4

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (319)
                      .+.+.+.+...++.+|||||||+|..+..+++.. ..+|+|+|+|+.+++.|+++...    ...++.++.+|+..++++
T Consensus       255 te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~----~~~~v~~~~~d~~~~~~~  329 (475)
T PLN02336        255 TKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIG----RKCSVEFEVADCTKKTYP  329 (475)
T ss_pred             HHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhc----CCCceEEEEcCcccCCCC
Confidence            4455555555678899999999999998888764 45999999999999999987653    235789999999998888


Q ss_pred             CCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          235 SGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      +++||+|++.++++|++++..+++++.++|||||...+..+
T Consensus       330 ~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~  370 (475)
T PLN02336        330 DNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDY  370 (475)
T ss_pred             CCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence            88999999999999999999999999999999887665544

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.62  E-value=7.4e-15  Score=126.49  Aligned_cols=112  Identities=14%  Similarity=0.134  Sum_probs=90.7

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (319)
                      ..+.+.+...++++|||+|||+|.++..+++.+.  +|+|+|+|+.+++.++++....+    .++.+...|+...++. 
T Consensus        20 ~~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g~--~V~~iD~s~~~l~~a~~~~~~~~----~~v~~~~~d~~~~~~~-   92 (195)
T TIGR00477        20 SAVREAVKTVAPCKTLDLGCGQGRNSLYLSLAGY--DVRAWDHNPASIASVLDMKAREN----LPLRTDAYDINAAALN-   92 (195)
T ss_pred             HHHHHHhccCCCCcEEEeCCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHHhC----CCceeEeccchhcccc-
Confidence            3444556666678999999999999999999876  99999999999999998876542    2467778888766654 


Q ss_pred             CCccEEEecccccCCC--CHHHHHHHHHHhhcCCCeeEEEE
Q 020988          236 GFVDAVHAGAALHCWP--SPSNAASVFSSSYSLLSICYLLQ  274 (319)
Q Consensus       236 ~~fD~V~~~~vl~h~~--d~~~~l~el~rvlk~g~~~g~~~  274 (319)
                      ++||+|++..+++|++  +....++++.++|+|+|...++.
T Consensus        93 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~  133 (195)
T TIGR00477        93 EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVA  133 (195)
T ss_pred             CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence            5899999999999985  34678999999999999855543

Part of a tellurite-reducing operon tehA and tehB

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.61  E-value=1e-14  Score=128.79  Aligned_cols=104  Identities=23%  Similarity=0.326  Sum_probs=93.2

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (319)
                      ..+.+|||||||+|.++..+++.++..+++|+|+++.+++.++++..       .++.++.+|+.+.++.+++||+|++.
T Consensus        33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~fD~vi~~  105 (240)
T TIGR02072        33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-------ENVQFICGDAEKLPLEDSSFDLIVSN  105 (240)
T ss_pred             CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-------CCCeEEecchhhCCCCCCceeEEEEh
Confidence            34579999999999999999999887789999999999999988753       37889999999999888999999999


Q ss_pred             ccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          245 AALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       245 ~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      ++++|+.++...++++.++++++|...+..+
T Consensus       106 ~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~  136 (240)
T TIGR02072       106 LALQWCDDLSQALSELARVLKPGGLLAFSTF  136 (240)
T ss_pred             hhhhhccCHHHHHHHHHHHcCCCcEEEEEeC
Confidence            9999999999999999999999987776655

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.61  E-value=1.3e-14  Score=131.26  Aligned_cols=109  Identities=16%  Similarity=0.207  Sum_probs=94.5

Q ss_pred             hccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEE
Q 020988          163 KSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV  241 (319)
Q Consensus       163 ~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V  241 (319)
                      ...++.+|||||||+|..+..+++. ++..+|+|+|+++.+++.|+++....+   ..+++++.+|++.+++++++||+|
T Consensus        74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g---~~~v~~~~~d~~~l~~~~~~fD~V  150 (272)
T PRK11873         74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAG---YTNVEFRLGEIEALPVADNSVDVI  150 (272)
T ss_pred             cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcC---CCCEEEEEcchhhCCCCCCceeEE
Confidence            3467899999999999988766665 555589999999999999999876652   358899999999999888899999


Q ss_pred             EecccccCCCCHHHHHHHHHHhhcCCCeeEEEE
Q 020988          242 HAGAALHCWPSPSNAASVFSSSYSLLSICYLLQ  274 (319)
Q Consensus       242 ~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~  274 (319)
                      ++..+++|.++....++++.++|||||.+.+..
T Consensus       151 i~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~  183 (272)
T PRK11873        151 ISNCVINLSPDKERVFKEAFRVLKPGGRFAISD  183 (272)
T ss_pred             EEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEE
Confidence            999999999999999999999999998876653

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.60  E-value=4.1e-14  Score=120.67  Aligned_cols=103  Identities=17%  Similarity=0.084  Sum_probs=89.1

Q ss_pred             CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecc
Q 020988          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (319)
Q Consensus       166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (319)
                      ++.+|||||||+|..+..+++..+..+|+|+|+++.+++.|+++.+..+   ..+++++.+|+.+++. +++||+|++..
T Consensus        45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~---l~~i~~~~~d~~~~~~-~~~fDlV~~~~  120 (187)
T PRK00107         45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELG---LKNVTVVHGRAEEFGQ-EEKFDVVTSRA  120 (187)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcC---CCCEEEEeccHhhCCC-CCCccEEEEcc
Confidence            4789999999999999999887677799999999999999999988763   3469999999998876 67999999974


Q ss_pred             cccCCCCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988          246 ALHCWPSPSNAASVFSSSYSLLSICYLLQFR  276 (319)
Q Consensus       246 vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~  276 (319)
                          +.++...++++.++++|+|.+.++...
T Consensus       121 ----~~~~~~~l~~~~~~LkpGG~lv~~~~~  147 (187)
T PRK00107        121 ----VASLSDLVELCLPLLKPGGRFLALKGR  147 (187)
T ss_pred             ----ccCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence                457788999999999999988877653

>PRK08317 hypothetical protein; Provisional

Probab=99.60  E-value=2.5e-14  Score=126.26  Aligned_cols=115  Identities=28%  Similarity=0.365  Sum_probs=98.6

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (319)
                      +.+.+.+...++.+|||+|||+|.++..+++.. +..+++|+|+++.+++.++++...    ...++.+..+|+..+++.
T Consensus         9 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~----~~~~~~~~~~d~~~~~~~   84 (241)
T PRK08317          9 ARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG----LGPNVEFVRGDADGLPFP   84 (241)
T ss_pred             HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC----CCCceEEEecccccCCCC
Confidence            344556666788999999999999999998875 567999999999999999987332    246789999999988888


Q ss_pred             CCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEE
Q 020988          235 SGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQ  274 (319)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~  274 (319)
                      +++||+|++..+++|++++..+++++.++|+|+|...+..
T Consensus        85 ~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  124 (241)
T PRK08317         85 DGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLD  124 (241)
T ss_pred             CCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence            8999999999999999999999999999999998766544

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.60  E-value=1.8e-14  Score=128.64  Aligned_cols=105  Identities=13%  Similarity=0.201  Sum_probs=88.0

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhh--CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEE
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKS--GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH  242 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~--g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~  242 (319)
                      .++.+|||||||+|..+..+++.  .+..+++|+|+|+.|++.|++++...+  ...+++++++|+.++|++  .+|+|+
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~--~~~~v~~~~~d~~~~~~~--~~D~vv  130 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK--APTPVDVIEGDIRDIAIE--NASMVV  130 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC--CCCCeEEEeCChhhCCCC--CCCEEe
Confidence            46789999999999999888773  456799999999999999999987642  234799999999988864  599999


Q ss_pred             ecccccCCCCH--HHHHHHHHHhhcCCCeeEEE
Q 020988          243 AGAALHCWPSP--SNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       243 ~~~vl~h~~d~--~~~l~el~rvlk~g~~~g~~  273 (319)
                      ++.+++|+++.  ..+++++.++|||||.+.+.
T Consensus       131 ~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~  163 (247)
T PRK15451        131 LNFTLQFLEPSERQALLDKIYQGLNPGGALVLS  163 (247)
T ss_pred             hhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            99999999753  47899999999999876654

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.59  E-value=1.4e-14  Score=130.65  Aligned_cols=115  Identities=16%  Similarity=0.102  Sum_probs=89.9

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (319)
                      .+.+.+.+...+|.+|||||||.|.++..+++.. +++|+|+.+|+++.+.+++++...+  ...++++...|..+++. 
T Consensus        51 ~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~g--l~~~v~v~~~D~~~~~~-  126 (273)
T PF02353_consen   51 LDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAG--LEDRVEVRLQDYRDLPG-  126 (273)
T ss_dssp             HHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCST--SSSTEEEEES-GGG----
T ss_pred             HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcC--CCCceEEEEeeccccCC-
Confidence            3455666677899999999999999999999993 4599999999999999999998764  45679999999987753 


Q ss_pred             CCCccEEEecccccCCC--CHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          235 SGFVDAVHAGAALHCWP--SPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       235 ~~~fD~V~~~~vl~h~~--d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                        +||.|++.+++||+.  +....++++.++|||+|...+-.+
T Consensus       127 --~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i  167 (273)
T PF02353_consen  127 --KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTI  167 (273)
T ss_dssp             --S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEE
T ss_pred             --CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEec
Confidence              999999999999994  557899999999999998876655

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.59  E-value=6.1e-15  Score=122.21  Aligned_cols=105  Identities=23%  Similarity=0.369  Sum_probs=84.2

Q ss_pred             HHHHHhh-ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988          157 MAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (319)
Q Consensus       157 ~l~~~l~-~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (319)
                      .+..+.. ..++++|||||||+|.++..+++.+.  +++|+|+++.+++.  .           ++.....+....+.++
T Consensus        12 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~--~-----------~~~~~~~~~~~~~~~~   76 (161)
T PF13489_consen   12 LLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK--R-----------NVVFDNFDAQDPPFPD   76 (161)
T ss_dssp             HHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH--T-----------TSEEEEEECHTHHCHS
T ss_pred             HHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh--h-----------hhhhhhhhhhhhhccc
Confidence            4444443 46789999999999999999988877  99999999999887  1           2334444444555567


Q ss_pred             CCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988          236 GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFR  276 (319)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~  276 (319)
                      ++||+|+++.+|+|++|+..+++++.+++||+|...+....
T Consensus        77 ~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~  117 (161)
T PF13489_consen   77 GSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPN  117 (161)
T ss_dssp             SSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred             cchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcC
Confidence            89999999999999999999999999999988766655553

...

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.57  E-value=4.5e-14  Score=122.32  Aligned_cols=91  Identities=11%  Similarity=0.241  Sum_probs=75.5

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (319)
                      .++.+|||||||+|.++..+++..+..+++|+|+|+.+++.|+++.        .++.+.++|+.+ |+++++||+|++.
T Consensus        42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~--------~~~~~~~~d~~~-~~~~~sfD~V~~~  112 (204)
T TIGR03587        42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL--------PNINIIQGSLFD-PFKDNFFDLVLTK  112 (204)
T ss_pred             CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC--------CCCcEEEeeccC-CCCCCCEEEEEEC
Confidence            4567999999999999999988755569999999999999998864        356788999888 8888999999999


Q ss_pred             ccccCCCC--HHHHHHHHHHhh
Q 020988          245 AALHCWPS--PSNAASVFSSSY  264 (319)
Q Consensus       245 ~vl~h~~d--~~~~l~el~rvl  264 (319)
                      ++++|++.  ...+++++.|++
T Consensus       113 ~vL~hl~p~~~~~~l~el~r~~  134 (204)
T TIGR03587       113 GVLIHINPDNLPTAYRELYRCS  134 (204)
T ss_pred             ChhhhCCHHHHHHHHHHHHhhc
Confidence            99999952  235566666665

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.57  E-value=2.9e-14  Score=125.26  Aligned_cols=105  Identities=17%  Similarity=0.139  Sum_probs=91.2

Q ss_pred             CeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 020988          168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAAL  247 (319)
Q Consensus       168 ~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl  247 (319)
                      .+|||||||+|.++..+++..+..+++|+|+|+++++.+++++...+  ...++.++.+|+...+++ ++||+|++..++
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~g--l~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l   77 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALG--LQGRIRIFYRDSAKDPFP-DTYDLVFGFEVI   77 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC--CCcceEEEecccccCCCC-CCCCEeehHHHH
Confidence            37999999999999999988766799999999999999999887643  345789999999777664 589999999999


Q ss_pred             cCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          248 HCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       248 ~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      +|++++...++++.++|||+|...+..+
T Consensus        78 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~  105 (224)
T smart00828       78 HHIKDKMDLFSNISRHLKDGGHLVLADF  105 (224)
T ss_pred             HhCCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence            9999999999999999999988766544

>PRK06202 hypothetical protein; Provisional

Probab=99.56  E-value=4.3e-14  Score=125.01  Aligned_cols=98  Identities=16%  Similarity=0.167  Sum_probs=80.9

Q ss_pred             hhccCCCeEEEEcCCcChHHHHHHh----hCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCC
Q 020988          162 FKSAQGGLLVDVSCGSGLFSRKFAK----SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF  237 (319)
Q Consensus       162 l~~~~~~~VLDiGcG~G~~~~~l~~----~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~  237 (319)
                      +...++.+|||||||+|.++..+++    .++..+|+|+|+|++|++.|+++...      .++.+...+...++..+++
T Consensus        56 l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~------~~~~~~~~~~~~l~~~~~~  129 (232)
T PRK06202         56 LSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR------PGVTFRQAVSDELVAEGER  129 (232)
T ss_pred             cCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc------CCCeEEEEecccccccCCC
Confidence            3345678999999999999888765    35556999999999999999987543      3577777777777777789


Q ss_pred             ccEEEecccccCCCCHH--HHHHHHHHhhc
Q 020988          238 VDAVHAGAALHCWPSPS--NAASVFSSSYS  265 (319)
Q Consensus       238 fD~V~~~~vl~h~~d~~--~~l~el~rvlk  265 (319)
                      ||+|++++++||+++++  .+++++.|+++
T Consensus       130 fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~  159 (232)
T PRK06202        130 FDVVTSNHFLHHLDDAEVVRLLADSAALAR  159 (232)
T ss_pred             ccEEEECCeeecCChHHHHHHHHHHHHhcC
Confidence            99999999999998863  68899999887

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.55  E-value=3.9e-14  Score=126.60  Aligned_cols=110  Identities=18%  Similarity=0.182  Sum_probs=87.7

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHH--HHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCY--DFIKQDNTILTSNLALVRADVCRLPF  233 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~--~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (319)
                      +.+...+....|.+|||||||+|+++..++..|+ ..|+|+|++....-..+  +++..    ....+.++..-++++|.
T Consensus       105 ~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA-~~ViGiDP~~lf~~QF~~i~~~lg----~~~~~~~lplgvE~Lp~  179 (315)
T PF08003_consen  105 DRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGA-KSVIGIDPSPLFYLQFEAIKHFLG----QDPPVFELPLGVEDLPN  179 (315)
T ss_pred             HHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCC-CEEEEECCChHHHHHHHHHHHHhC----CCccEEEcCcchhhccc
Confidence            6777788778899999999999999999999986 57999999987655532  23221    11233444356788887


Q ss_pred             CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeE
Q 020988          234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICY  271 (319)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g  271 (319)
                       .+.||+|++.+||.|..+|...+++++..|++||..-
T Consensus       180 -~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLv  216 (315)
T PF08003_consen  180 -LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELV  216 (315)
T ss_pred             -cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEE
Confidence             6899999999999999999999999999999987544

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>TIGR00740 methyltransferase, putative

Probab=99.55  E-value=9.9e-14  Score=123.24  Aligned_cols=105  Identities=12%  Similarity=0.172  Sum_probs=87.4

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEE
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSG--TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH  242 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~  242 (319)
                      .++.+|||||||+|.++..+++..  +..+++|+|+|+.|++.|+++++..+  ...+++++++|+..++++  .+|+|+
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~--~~d~v~  127 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH--SEIPVEILCNDIRHVEIK--NASMVI  127 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC--CCCCeEEEECChhhCCCC--CCCEEe
Confidence            467899999999999999998863  56799999999999999999886532  234789999999998865  589999


Q ss_pred             ecccccCCCC--HHHHHHHHHHhhcCCCeeEEE
Q 020988          243 AGAALHCWPS--PSNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       243 ~~~vl~h~~d--~~~~l~el~rvlk~g~~~g~~  273 (319)
                      +..+++|+++  +..+++++.++|+|+|.+.+.
T Consensus       128 ~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~  160 (239)
T TIGR00740       128 LNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLS  160 (239)
T ss_pred             eecchhhCCHHHHHHHHHHHHHhcCCCeEEEEe
Confidence            9999999964  467899999999998865444

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.55  E-value=7.3e-14  Score=127.44  Aligned_cols=103  Identities=17%  Similarity=0.178  Sum_probs=87.1

Q ss_pred             ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (319)
                      ..++++|||+|||+|.++..+++.+.  +|+|+|+|+.+++.++++....+    .++++...|+...++ +++||+|++
T Consensus       118 ~~~~~~vLDlGcG~G~~~~~la~~g~--~V~avD~s~~ai~~~~~~~~~~~----l~v~~~~~D~~~~~~-~~~fD~I~~  190 (287)
T PRK12335        118 TVKPGKALDLGCGQGRNSLYLALLGF--DVTAVDINQQSLENLQEIAEKEN----LNIRTGLYDINSASI-QEEYDFILS  190 (287)
T ss_pred             ccCCCCEEEeCCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcC----CceEEEEechhcccc-cCCccEEEE
Confidence            34567999999999999999999876  99999999999999999887642    378888889887665 678999999


Q ss_pred             cccccCCC--CHHHHHHHHHHhhcCCCeeEEE
Q 020988          244 GAALHCWP--SPSNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       244 ~~vl~h~~--d~~~~l~el~rvlk~g~~~g~~  273 (319)
                      ..+++|++  +....++++.++++|+|...++
T Consensus       191 ~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v  222 (287)
T PRK12335        191 TVVLMFLNRERIPAIIKNMQEHTNPGGYNLIV  222 (287)
T ss_pred             cchhhhCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            99999986  3457899999999999875544

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.54  E-value=1.1e-13  Score=121.03  Aligned_cols=111  Identities=25%  Similarity=0.328  Sum_probs=95.8

Q ss_pred             HHhhccCCCeEEEEcCCcChHHHHHHhhCCC-CeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCc
Q 020988          160 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFV  238 (319)
Q Consensus       160 ~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~f  238 (319)
                      ..+...++.+|||+|||+|.++..+++.++. .+++++|+++.+++.++++...     ..++.++.+|+.++++.+++|
T Consensus        33 ~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~-----~~~i~~~~~d~~~~~~~~~~~  107 (223)
T TIGR01934        33 KLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSEL-----PLNIEFIQADAEALPFEDNSF  107 (223)
T ss_pred             HHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhcc-----CCCceEEecchhcCCCCCCcE
Confidence            3444457889999999999999999988764 6899999999999999987641     357899999999988877899


Q ss_pred             cEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          239 DAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       239 D~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      |+|++..+++|.+++..+++++.++|+|+|...+..+
T Consensus       108 D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  144 (223)
T TIGR01934       108 DAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEF  144 (223)
T ss_pred             EEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEe
Confidence            9999999999999999999999999999987776554

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.54  E-value=2e-13  Score=118.96  Aligned_cols=110  Identities=23%  Similarity=0.223  Sum_probs=85.6

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhc---------CccCCCCeEEEEcCCCCCCCC-
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD---------NTILTSNLALVRADVCRLPFA-  234 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~---------~~~~~~~i~~~~~d~~~lp~~-  234 (319)
                      .++++|||+|||.|..+..++++|.  +|+|+|+|+.+++.+.+.....         ......+++++++|+.+++.. 
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~G~--~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~  110 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQGH--RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD  110 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhCCC--eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence            4678999999999999999999998  9999999999999864432110         000134789999999988642 


Q ss_pred             CCCccEEEecccccCCCCH--HHHHHHHHHhhcCCCeeEEEEee
Q 020988          235 SGFVDAVHAGAALHCWPSP--SNAASVFSSSYSLLSICYLLQFR  276 (319)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~--~~~l~el~rvlk~g~~~g~~~~~  276 (319)
                      .++||.|+...+++|++..  ...++.+.++|||+|...++.+.
T Consensus       111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~  154 (213)
T TIGR03840       111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLD  154 (213)
T ss_pred             CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence            4679999999999999643  35688899999999876666553

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.54  E-value=2.9e-14  Score=119.81  Aligned_cols=98  Identities=14%  Similarity=0.275  Sum_probs=84.4

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC-C-CC
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-L-PF  233 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~-l-p~  233 (319)
                      +.+.+++  .++.+|||+|||.|.++..+.+. .+.+..|+|++++.+..+.++          ++.++++|+++ + .|
T Consensus         5 ~~I~~~I--~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~r----------Gv~Viq~Dld~gL~~f   71 (193)
T PF07021_consen    5 QIIAEWI--EPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVAR----------GVSVIQGDLDEGLADF   71 (193)
T ss_pred             HHHHHHc--CCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHHc----------CCCEEECCHHHhHhhC
Confidence            4555555  45899999999999999999886 467999999999998888765          78899999976 4 48


Q ss_pred             CCCCccEEEecccccCCCCHHHHHHHHHHhhcC
Q 020988          234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSL  266 (319)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~  266 (319)
                      ++++||.|+++.+|+++.+|+..++|+.|+.|.
T Consensus        72 ~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRVgr~  104 (193)
T PF07021_consen   72 PDQSFDYVILSQTLQAVRRPDEVLEEMLRVGRR  104 (193)
T ss_pred             CCCCccEEehHhHHHhHhHHHHHHHHHHHhcCe
Confidence            899999999999999999999999999998553

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.53  E-value=1.1e-13  Score=116.50  Aligned_cols=111  Identities=15%  Similarity=0.195  Sum_probs=86.2

Q ss_pred             HHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCc
Q 020988          159 QEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFV  238 (319)
Q Consensus       159 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~f  238 (319)
                      ...++...-.++||+|||.|.++..|+.+.-  +++++|+|+.+++.|+++...     .+++.++++|+.+.. ++++|
T Consensus        36 ~aaLp~~ry~~alEvGCs~G~lT~~LA~rCd--~LlavDis~~Al~~Ar~Rl~~-----~~~V~~~~~dvp~~~-P~~~F  107 (201)
T PF05401_consen   36 LAALPRRRYRRALEVGCSIGVLTERLAPRCD--RLLAVDISPRALARARERLAG-----LPHVEWIQADVPEFW-PEGRF  107 (201)
T ss_dssp             HHHHTTSSEEEEEEE--TTSHHHHHHGGGEE--EEEEEES-HHHHHHHHHHTTT------SSEEEEES-TTT----SS-E
T ss_pred             HHhcCccccceeEecCCCccHHHHHHHHhhC--ceEEEeCCHHHHHHHHHhcCC-----CCCeEEEECcCCCCC-CCCCe
Confidence            3356666678999999999999999999865  999999999999999999875     479999999997753 57899


Q ss_pred             cEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEeec
Q 020988          239 DAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFRY  277 (319)
Q Consensus       239 D~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~~  277 (319)
                      |+|+++.+++++.+.+..-+.+.++.+.+.++|.+++..
T Consensus       108 DLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~  146 (201)
T PF05401_consen  108 DLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGH  146 (201)
T ss_dssp             EEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             eEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence            999999999999776665556677777888888888843

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.53  E-value=2.7e-13  Score=115.31  Aligned_cols=102  Identities=12%  Similarity=0.109  Sum_probs=84.3

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (319)
                      .++.+|||||||+|.++..++..++..+|+|+|+|+.+++.++++.++.+   ..+++++.+|+.+++. +++||+|++.
T Consensus        41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~---~~~i~~i~~d~~~~~~-~~~fD~I~s~  116 (181)
T TIGR00138        41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELG---LNNVEIVNGRAEDFQH-EEQFDVITSR  116 (181)
T ss_pred             cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhC---CCCeEEEecchhhccc-cCCccEEEeh
Confidence            35789999999999999998887777789999999999999998887653   3579999999988753 5799999987


Q ss_pred             ccccCCCCHHHHHHHHHHhhcCCCeeEEEE
Q 020988          245 AALHCWPSPSNAASVFSSSYSLLSICYLLQ  274 (319)
Q Consensus       245 ~vl~h~~d~~~~l~el~rvlk~g~~~g~~~  274 (319)
                      . +   .+....++.+.++|+|+|...+..
T Consensus       117 ~-~---~~~~~~~~~~~~~LkpgG~lvi~~  142 (181)
T TIGR00138       117 A-L---ASLNVLLELTLNLLKVGGYFLAYK  142 (181)
T ss_pred             h-h---hCHHHHHHHHHHhcCCCCEEEEEc
Confidence            5 3   455677888999999998766553

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.52  E-value=3.4e-13  Score=119.13  Aligned_cols=116  Identities=27%  Similarity=0.379  Sum_probs=97.3

Q ss_pred             HHHHhhccCCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCC
Q 020988          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (319)
Q Consensus       158 l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~  236 (319)
                      +...+...++.+|||+|||+|.++..+++.++ ..+++++|+++.+++.+++++...+  ...++.++.+|+..+++..+
T Consensus        43 ~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~~~  120 (239)
T PRK00216         43 TIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLG--LSGNVEFVQGDAEALPFPDN  120 (239)
T ss_pred             HHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccc--cccCeEEEecccccCCCCCC
Confidence            33444445678999999999999999998875 5799999999999999999875431  23578999999998887778


Q ss_pred             CccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          237 FVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      +||+|++..+++|+.++...++++.++++++|...++.+
T Consensus       121 ~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~  159 (239)
T PRK00216        121 SFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEF  159 (239)
T ss_pred             CccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEe
Confidence            999999999999999999999999999999987655544

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.51  E-value=5.1e-13  Score=105.78  Aligned_cols=112  Identities=18%  Similarity=0.113  Sum_probs=88.0

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC-CCCC
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFA  234 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~~  234 (319)
                      ..+.+.+...++.+|||+|||+|.++..+++..+..+|+++|+|+.+++.++++++..+   ..++.++.+|+.. ++..
T Consensus         9 ~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~   85 (124)
T TIGR02469         9 ALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFG---VSNIVIVEGDAPEALEDS   85 (124)
T ss_pred             HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhC---CCceEEEeccccccChhh
Confidence            34455555566789999999999999999998766799999999999999999887642   3578888888765 3333


Q ss_pred             CCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988          235 SGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~  273 (319)
                      .++||+|++....++   ...+++++.++|+++|.+.+-
T Consensus        86 ~~~~D~v~~~~~~~~---~~~~l~~~~~~Lk~gG~li~~  121 (124)
T TIGR02469        86 LPEPDRVFIGGSGGL---LQEILEAIWRRLRPGGRIVLN  121 (124)
T ss_pred             cCCCCEEEECCcchh---HHHHHHHHHHHcCCCCEEEEE
Confidence            468999999876554   357899999999998875543

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.51  E-value=6.2e-14  Score=118.52  Aligned_cols=111  Identities=16%  Similarity=0.155  Sum_probs=99.1

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (319)
                      ..+...++..+..+|.|+|||+|..+..+.++.|...++|+|-|++|++.|++++        ++++|..+|+.+.. ++
T Consensus        20 ~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl--------p~~~f~~aDl~~w~-p~   90 (257)
T COG4106          20 RDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL--------PDATFEEADLRTWK-PE   90 (257)
T ss_pred             HHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC--------CCCceecccHhhcC-CC
Confidence            4455666777889999999999999999999999999999999999999998874        68899999999875 35


Q ss_pred             CCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          236 GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      +++|+++++.+|++++|-...+..+...|.|||.+.+-+.
T Consensus        91 ~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmP  130 (257)
T COG4106          91 QPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMP  130 (257)
T ss_pred             CccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECC
Confidence            7899999999999999999999999999999998887776

>PRK06922 hypothetical protein; Provisional

Probab=99.50  E-value=2e-13  Score=133.82  Aligned_cols=108  Identities=16%  Similarity=0.196  Sum_probs=91.0

Q ss_pred             hccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC--CCCCCccE
Q 020988          163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDA  240 (319)
Q Consensus       163 ~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~  240 (319)
                      ...++++|||||||+|.++..+++..+..+++|+|+|+.|++.|+++....    ..++.++++|+.++|  +++++||+
T Consensus       415 d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~----g~~ie~I~gDa~dLp~~fedeSFDv  490 (677)
T PRK06922        415 DYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNE----GRSWNVIKGDAINLSSSFEKESVDT  490 (677)
T ss_pred             hhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc----CCCeEEEEcchHhCccccCCCCEEE
Confidence            334689999999999999999988878889999999999999999876542    346788999998887  77899999


Q ss_pred             EEecccccCCC-------------CHHHHHHHHHHhhcCCCeeEEEE
Q 020988          241 VHAGAALHCWP-------------SPSNAASVFSSSYSLLSICYLLQ  274 (319)
Q Consensus       241 V~~~~vl~h~~-------------d~~~~l~el~rvlk~g~~~g~~~  274 (319)
                      |+++.++||+.             ++..+++++.++|||||...+..
T Consensus       491 VVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D  537 (677)
T PRK06922        491 IVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD  537 (677)
T ss_pred             EEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            99999998762             45688999999999998776653

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.49  E-value=4.6e-13  Score=117.38  Aligned_cols=105  Identities=25%  Similarity=0.358  Sum_probs=83.9

Q ss_pred             HHHHHHhh--ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988          156 KMAQEYFK--SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (319)
Q Consensus       156 ~~l~~~l~--~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (319)
                      +.+.+++.  ..++.+|||||||+|.++..+++.+.  +++|+|+|+++++.|++++...+  ...++.+.++|+..++ 
T Consensus        43 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~v~gvD~s~~~i~~a~~~~~~~~--~~~~i~~~~~d~~~~~-  117 (219)
T TIGR02021        43 RKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGA--IVKAVDISEQMVQMARNRAQGRD--VAGNVEFEVNDLLSLC-  117 (219)
T ss_pred             HHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CCCceEEEECChhhCC-
Confidence            34444554  45688999999999999999998765  99999999999999999886542  1247899999998876 


Q ss_pred             CCCCccEEEecccccCCCC--HHHHHHHHHHhhcCC
Q 020988          234 ASGFVDAVHAGAALHCWPS--PSNAASVFSSSYSLL  267 (319)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d--~~~~l~el~rvlk~g  267 (319)
                        ++||+|++..+++|++.  ...+++++.++++++
T Consensus       118 --~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~  151 (219)
T TIGR02021       118 --GEFDIVVCMDVLIHYPASDMAKALGHLASLTKER  151 (219)
T ss_pred             --CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCC
Confidence              68999999999999864  346677777776643

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.48  E-value=3.3e-13  Score=116.84  Aligned_cols=107  Identities=14%  Similarity=0.164  Sum_probs=87.2

Q ss_pred             CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCC-CCCC--CCCCCccEEE
Q 020988          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CRLP--FASGFVDAVH  242 (319)
Q Consensus       166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~-~~lp--~~~~~fD~V~  242 (319)
                      ++.+|||||||+|.++..+++..+..+++|+|+|+.+++.|+++....+   ..++.++++|+ ..++  +++++||+|+
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~---~~~v~~~~~d~~~~l~~~~~~~~~D~V~  116 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEG---LTNLRLLCGDAVEVLLDMFPDGSLDRIY  116 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcC---CCCEEEEecCHHHHHHHHcCccccceEE
Confidence            6789999999999999999988777789999999999999999887642   36799999999 7666  6678999999


Q ss_pred             ecccccCCC--------CHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          243 AGAALHCWP--------SPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       243 ~~~vl~h~~--------d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      +.+...+..        ....+++++.++|||+|.+.+...
T Consensus       117 ~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~  157 (202)
T PRK00121        117 LNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD  157 (202)
T ss_pred             EECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence            876543221        135779999999999987765543

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.48  E-value=2.1e-13  Score=117.32  Aligned_cols=98  Identities=13%  Similarity=0.221  Sum_probs=79.7

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC-C-CC
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-L-PF  233 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~-l-p~  233 (319)
                      +.+.+.+.  ++.+|||||||+|.++..+++.. ...++|+|+|+++++.++++          ++.++++|+.+ + ++
T Consensus         5 ~~i~~~i~--~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~~----------~~~~~~~d~~~~l~~~   71 (194)
T TIGR02081         5 ESILNLIP--PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVAR----------GVNVIQGDLDEGLEAF   71 (194)
T ss_pred             HHHHHhcC--CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHHc----------CCeEEEEEhhhccccc
Confidence            44445543  56899999999999998887653 34789999999999988652          56788889875 4 46


Q ss_pred             CCCCccEEEecccccCCCCHHHHHHHHHHhhcC
Q 020988          234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSL  266 (319)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~  266 (319)
                      .+++||+|++.++++|++|+..+++++.|++++
T Consensus        72 ~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~~  104 (194)
T TIGR02081        72 PDKSFDYVILSQTLQATRNPEEILDEMLRVGRH  104 (194)
T ss_pred             CCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCCe
Confidence            678999999999999999999999999887653

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.48  E-value=5e-13  Score=113.65  Aligned_cols=111  Identities=16%  Similarity=0.196  Sum_probs=84.3

Q ss_pred             HHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCC
Q 020988          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF  237 (319)
Q Consensus       158 l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~  237 (319)
                      +.+.+...+++++||+|||.|+.+..+++.|.  .|+++|.|+..++.+++..++.    .-.++..+.|+.+..++ +.
T Consensus        22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~G~--~VtAvD~s~~al~~l~~~a~~~----~l~i~~~~~Dl~~~~~~-~~   94 (192)
T PF03848_consen   22 VLEAVPLLKPGKALDLGCGEGRNALYLASQGF--DVTAVDISPVALEKLQRLAEEE----GLDIRTRVADLNDFDFP-EE   94 (192)
T ss_dssp             HHHHCTTS-SSEEEEES-TTSHHHHHHHHTT---EEEEEESSHHHHHHHHHHHHHT----T-TEEEEE-BGCCBS-T-TT
T ss_pred             HHHHHhhcCCCcEEEcCCCCcHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHhhc----CceeEEEEecchhcccc-CC
Confidence            44455556789999999999999999999999  9999999999999998877664    34588999999888875 68


Q ss_pred             ccEEEecccccCCCCH--HHHHHHHHHhhcCCCeeEEEEe
Q 020988          238 VDAVHAGAALHCWPSP--SNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       238 fD~V~~~~vl~h~~d~--~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      ||+|++..|++|++.+  ...++.|...++|||..-+..+
T Consensus        95 yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~  134 (192)
T PF03848_consen   95 YDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTF  134 (192)
T ss_dssp             EEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             cCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence            9999999999998643  3466777777777776555444

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.48  E-value=1.1e-12  Score=113.84  Aligned_cols=110  Identities=16%  Similarity=0.105  Sum_probs=87.1

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (319)
                      ...+.+.+...++.+|||||||+|..+..+++.. ...+|+++|+++++++.|++++...+  ...+++++.+|+.+...
T Consensus        61 ~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~--~~~~v~~~~~d~~~~~~  138 (205)
T PRK13944         61 VAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLG--YWGVVEVYHGDGKRGLE  138 (205)
T ss_pred             HHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC--CCCcEEEEECCcccCCc
Confidence            3455566666788999999999999998888763 24589999999999999999887642  22368999999987544


Q ss_pred             CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEE
Q 020988          234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYL  272 (319)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~  272 (319)
                      ...+||+|++..+++|++      +++.++|++||.+.+
T Consensus       139 ~~~~fD~Ii~~~~~~~~~------~~l~~~L~~gG~lvi  171 (205)
T PRK13944        139 KHAPFDAIIVTAAASTIP------SALVRQLKDGGVLVI  171 (205)
T ss_pred             cCCCccEEEEccCcchhh------HHHHHhcCcCcEEEE
Confidence            567999999999988875      367788888886643

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.47  E-value=6.9e-13  Score=125.41  Aligned_cols=111  Identities=14%  Similarity=0.120  Sum_probs=91.2

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (319)
                      .+.+.+.+...++.+|||||||+|.++..+++.. ..+|+|+|+|+++++.|+++...      .++++...|...+   
T Consensus       156 ~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~------l~v~~~~~D~~~l---  225 (383)
T PRK11705        156 LDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAG------LPVEIRLQDYRDL---  225 (383)
T ss_pred             HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhcc------CeEEEEECchhhc---
Confidence            3445555666788999999999999999898763 35999999999999999998742      2578888888765   


Q ss_pred             CCCccEEEecccccCCCC--HHHHHHHHHHhhcCCCeeEEEEe
Q 020988          235 SGFVDAVHAGAALHCWPS--PSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d--~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      +++||.|++..+++|+.+  +...++++.++|||+|...+..+
T Consensus       226 ~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i  268 (383)
T PRK11705        226 NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI  268 (383)
T ss_pred             CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence            468999999999999964  46889999999999987776655

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.47  E-value=5.5e-13  Score=120.09  Aligned_cols=106  Identities=12%  Similarity=0.160  Sum_probs=80.9

Q ss_pred             CCCeEEEEcCCcCh----HHHHHHhhCC-----CCeEEEEeCCHHHHHHHHHHHhh----cCc-----------------
Q 020988          166 QGGLLVDVSCGSGL----FSRKFAKSGT-----YSGVVALDFSENMLRQCYDFIKQ----DNT-----------------  215 (319)
Q Consensus       166 ~~~~VLDiGcG~G~----~~~~l~~~g~-----~~~v~gvD~s~~~l~~a~~~~~~----~~~-----------------  215 (319)
                      ++.+|+|+|||+|.    ++..+.+.++     ..+|+|+|+|+.|++.|++..-.    .+.                 
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~  178 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR  178 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence            45799999999996    4445555432     45899999999999999985310    000                 


Q ss_pred             ---cCCCCeEEEEcCCCCCCCCCCCccEEEecccccCCCCHH--HHHHHHHHhhcCCCeeE
Q 020988          216 ---ILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPS--NAASVFSSSYSLLSICY  271 (319)
Q Consensus       216 ---~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~--~~l~el~rvlk~g~~~g  271 (319)
                         ....++.|.++|+.+.+++.++||+|+|.++++|++++.  +++++++++|+|||.+.
T Consensus       179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~  239 (264)
T smart00138      179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLF  239 (264)
T ss_pred             EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEE
Confidence               011378999999999887788999999999999996544  68999999998887543

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.45  E-value=6.9e-13  Score=129.38  Aligned_cols=109  Identities=21%  Similarity=0.290  Sum_probs=89.5

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCC--CCCC
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC--RLPF  233 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~--~lp~  233 (319)
                      ..+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+++.+++.+++...     ...++.++++|+.  .+++
T Consensus        27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~~--~v~giD~s~~~l~~a~~~~~-----~~~~i~~~~~d~~~~~~~~   99 (475)
T PLN02336         27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKKAG--QVIALDFIESVIKKNESING-----HYKNVKFMCADVTSPDLNI   99 (475)
T ss_pred             hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhCC--EEEEEeCCHHHHHHHHHHhc-----cCCceEEEEecccccccCC
Confidence            4455566656778999999999999999998865  99999999999998766432     2357899999986  4677


Q ss_pred             CCCCccEEEecccccCCCCH--HHHHHHHHHhhcCCCeeE
Q 020988          234 ASGFVDAVHAGAALHCWPSP--SNAASVFSSSYSLLSICY  271 (319)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~--~~~l~el~rvlk~g~~~g  271 (319)
                      ++++||+|++..+++|+++.  ..+++++.++|||+|...
T Consensus       100 ~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~  139 (475)
T PLN02336        100 SDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIF  139 (475)
T ss_pred             CCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEE
Confidence            78899999999999999874  578899999998887653

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.45  E-value=2.7e-12  Score=108.92  Aligned_cols=112  Identities=12%  Similarity=0.155  Sum_probs=89.4

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (319)
                      ..+...+...++.+|||+|||+|.++..+++.++  +|+|+|+|+.+++.+++++...    ..++.++.+|+.+.+  .
T Consensus         9 ~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~--~   80 (179)
T TIGR00537         9 LLLEANLRELKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLN----NVGLDVVMTDLFKGV--R   80 (179)
T ss_pred             HHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHc----CCceEEEEccccccc--C
Confidence            3444555556678999999999999999999886  9999999999999999988764    246888899987654  3


Q ss_pred             CCccEEEecccccCCCCH---------------------HHHHHHHHHhhcCCCeeEEEEe
Q 020988          236 GFVDAVHAGAALHCWPSP---------------------SNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~---------------------~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      ++||+|+++..+++.++.                     ...++++.++|+++|...+...
T Consensus        81 ~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~  141 (179)
T TIGR00537        81 GKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQS  141 (179)
T ss_pred             CcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEe
Confidence            589999999888776542                     3568888899999887666554

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.44  E-value=2.5e-12  Score=112.40  Aligned_cols=110  Identities=20%  Similarity=0.191  Sum_probs=85.2

Q ss_pred             ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhc---------CccCCCCeEEEEcCCCCCCCC
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD---------NTILTSNLALVRADVCRLPFA  234 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~---------~~~~~~~i~~~~~d~~~lp~~  234 (319)
                      ..++++|||+|||.|..+..+++.|.  +|+|+|+|+.+++.+.+.....         ......++++.++|+.+++..
T Consensus        35 ~~~~~rvL~~gCG~G~da~~LA~~G~--~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~  112 (218)
T PRK13255         35 LPAGSRVLVPLCGKSLDMLWLAEQGH--EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA  112 (218)
T ss_pred             CCCCCeEEEeCCCChHhHHHHHhCCC--eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc
Confidence            34678999999999999999999988  9999999999999875321100         000135789999999988543


Q ss_pred             -CCCccEEEecccccCCCCH--HHHHHHHHHhhcCCCeeEEEEe
Q 020988          235 -SGFVDAVHAGAALHCWPSP--SNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       235 -~~~fD~V~~~~vl~h~~d~--~~~l~el~rvlk~g~~~g~~~~  275 (319)
                       .+.||.|+-..+++|++..  .+.++.+.++|+|+|.+.++.+
T Consensus       113 ~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~  156 (218)
T PRK13255        113 DLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTL  156 (218)
T ss_pred             cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence             2689999999999999643  4678899999999987555444

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.44  E-value=3.2e-12  Score=111.52  Aligned_cols=110  Identities=15%  Similarity=0.087  Sum_probs=88.3

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (319)
                      ...+.+.+...++.+|||||||+|.++..+++.. ...+|+++|+++++++.++++++..+   ..++.++.+|......
T Consensus        65 ~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g---~~~v~~~~gd~~~~~~  141 (212)
T PRK13942         65 VAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG---YDNVEVIVGDGTLGYE  141 (212)
T ss_pred             HHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCCeEEEECCcccCCC
Confidence            4556667777889999999999999998888763 44699999999999999999987653   4579999999987655


Q ss_pred             CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988          234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~  273 (319)
                      ..++||+|++..+.++++      +.+.+.||++|.+.+.
T Consensus       142 ~~~~fD~I~~~~~~~~~~------~~l~~~LkpgG~lvi~  175 (212)
T PRK13942        142 ENAPYDRIYVTAAGPDIP------KPLIEQLKDGGIMVIP  175 (212)
T ss_pred             cCCCcCEEEECCCcccch------HHHHHhhCCCcEEEEE
Confidence            668999999988877653      3566788888875443

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.44  E-value=2.9e-12  Score=107.94  Aligned_cols=119  Identities=18%  Similarity=0.289  Sum_probs=92.3

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (319)
Q Consensus       154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (319)
                      ..+.+.+.+...++++|||+|||+|..+..+++.++..+|+++|+++.+++.++++++.++   ..+++++..|..+. .
T Consensus        19 ~t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~---~~~v~~~~~d~~~~-~   94 (170)
T PF05175_consen   19 GTRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNG---LENVEVVQSDLFEA-L   94 (170)
T ss_dssp             HHHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTT---CTTEEEEESSTTTT-C
T ss_pred             HHHHHHHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcC---cccccccccccccc-c
Confidence            3456677776668899999999999999999999987679999999999999999998863   33489999998663 3


Q ss_pred             CCCCccEEEecccccCCCC-----HHHHHHHHHHhhcCCCeeEEEEee
Q 020988          234 ASGFVDAVHAGAALHCWPS-----PSNAASVFSSSYSLLSICYLLQFR  276 (319)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d-----~~~~l~el~rvlk~g~~~g~~~~~  276 (319)
                      .+++||+|+++--++.-.+     ..+.+++..+.|+++|.+.++.-.
T Consensus        95 ~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~  142 (170)
T PF05175_consen   95 PDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINS  142 (170)
T ss_dssp             CTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred             cccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeec
Confidence            3689999999877655443     356677788888888877765543

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.43  E-value=1.2e-12  Score=112.71  Aligned_cols=107  Identities=13%  Similarity=0.167  Sum_probs=86.2

Q ss_pred             CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC---CCCCCccEEE
Q 020988          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFVDAVH  242 (319)
Q Consensus       166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~fD~V~  242 (319)
                      ...+|||||||+|.++..+++..+..+++|+|+++.+++.|++++...+   ..+++++++|+.+++   ++++++|.|+
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~---l~ni~~i~~d~~~~~~~~~~~~~~d~v~   92 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLG---LKNLHVLCGDANELLDKFFPDGSLSKVF   92 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhC---CCCEEEEccCHHHHHHhhCCCCceeEEE
Confidence            4579999999999999999999888899999999999999999887652   458999999997653   4556899999


Q ss_pred             ecccccCCCCH--------HHHHHHHHHhhcCCCeeEEEEe
Q 020988          243 AGAALHCWPSP--------SNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       243 ~~~vl~h~~d~--------~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      +.....+....        ...++++.++|||+|.+.+..-
T Consensus        93 ~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td  133 (194)
T TIGR00091        93 LNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD  133 (194)
T ss_pred             EECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence            87543332211        4679999999999998765544

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.43  E-value=3.6e-12  Score=108.94  Aligned_cols=112  Identities=16%  Similarity=0.105  Sum_probs=88.5

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (319)
                      ...+...+...++.+|||||||+|.++..+++.++..+|+++|+++.+++.+++++...+   ..+++++.+|+. .++ 
T Consensus        20 r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~---~~~i~~~~~d~~-~~~-   94 (187)
T PRK08287         20 RALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFG---CGNIDIIPGEAP-IEL-   94 (187)
T ss_pred             HHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC---CCCeEEEecCch-hhc-
Confidence            344556666668899999999999999999988777899999999999999999887642   347889998874 233 


Q ss_pred             CCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEE
Q 020988          235 SGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQ  274 (319)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~  274 (319)
                      .++||+|++....++   ....++++.++|+++|.+.+..
T Consensus        95 ~~~~D~v~~~~~~~~---~~~~l~~~~~~Lk~gG~lv~~~  131 (187)
T PRK08287         95 PGKADAIFIGGSGGN---LTAIIDWSLAHLHPGGRLVLTF  131 (187)
T ss_pred             CcCCCEEEECCCccC---HHHHHHHHHHhcCCCeEEEEEE
Confidence            368999999876554   4567888999999988765443

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.41  E-value=4.8e-12  Score=111.48  Aligned_cols=102  Identities=23%  Similarity=0.319  Sum_probs=78.1

Q ss_pred             HHHHHHhhc---cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC
Q 020988          156 KMAQEYFKS---AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (319)
Q Consensus       156 ~~l~~~l~~---~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (319)
                      +.+...+..   .++.+|||||||+|.++..+++.+.  .|+|+|+|+.+++.|+++....+  ...++.+..+|+.   
T Consensus        50 ~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~--~v~~~D~s~~~i~~a~~~~~~~~--~~~~i~~~~~d~~---  122 (230)
T PRK07580         50 DTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGA--KVVASDISPQMVEEARERAPEAG--LAGNITFEVGDLE---  122 (230)
T ss_pred             HHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC--CccCcEEEEcCch---
Confidence            344444433   5678999999999999999998876  79999999999999999886542  1247889998853   


Q ss_pred             CCCCCccEEEecccccCCCCHH--HHHHHHHHhh
Q 020988          233 FASGFVDAVHAGAALHCWPSPS--NAASVFSSSY  264 (319)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~--~~l~el~rvl  264 (319)
                      ..+++||+|++..+++|++++.  ..++++.+++
T Consensus       123 ~~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~  156 (230)
T PRK07580        123 SLLGRFDTVVCLDVLIHYPQEDAARMLAHLASLT  156 (230)
T ss_pred             hccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhc
Confidence            3357899999999999987553  4455555543

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.41  E-value=3.5e-12  Score=110.98  Aligned_cols=106  Identities=16%  Similarity=0.078  Sum_probs=82.6

Q ss_pred             ccCCCeEEEEcCCcChHHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC--------CC
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------FA  234 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------~~  234 (319)
                      ..++.+|||||||+|.++..+++.. +...|+|+|+++ +.             ..+++.++++|+.+.+        +.
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~-------------~~~~v~~i~~D~~~~~~~~~i~~~~~  114 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD-------------PIVGVDFLQGDFRDELVLKALLERVG  114 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc-------------CCCCcEEEecCCCChHHHHHHHHHhC
Confidence            3568899999999999999998874 446899999988 11             1357899999998853        56


Q ss_pred             CCCccEEEecccccCCCCH-----------HHHHHHHHHhhcCCCeeEEEEeeccchhcc
Q 020988          235 SGFVDAVHAGAALHCWPSP-----------SNAASVFSSSYSLLSICYLLQFRYTKIIEL  283 (319)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~-----------~~~l~el~rvlk~g~~~g~~~~~~~~~~~~  283 (319)
                      +++||+|++..+.++..++           ..+++++.++|+|||.+.+.++....+.+.
T Consensus       115 ~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~  174 (209)
T PRK11188        115 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEY  174 (209)
T ss_pred             CCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHH
Confidence            7899999998777665443           357899999999999888877755544433

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.41  E-value=6.1e-12  Score=109.99  Aligned_cols=109  Identities=15%  Similarity=0.085  Sum_probs=87.2

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (319)
                      ...+.+.+...++.+|||||||+|.++..+++... ..+|+++|+++++++.|++++...+   ..+++++.+|+.+...
T Consensus        66 ~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g---~~~v~~~~~d~~~~~~  142 (215)
T TIGR00080        66 VAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG---LDNVIVIVGDGTQGWE  142 (215)
T ss_pred             HHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC---CCCeEEEECCcccCCc
Confidence            34566667778899999999999999999988754 3469999999999999999988753   4679999999977544


Q ss_pred             CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEE
Q 020988          234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYL  272 (319)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~  272 (319)
                      ..++||+|++.....+++      +.+.+.|+++|.+.+
T Consensus       143 ~~~~fD~Ii~~~~~~~~~------~~~~~~L~~gG~lv~  175 (215)
T TIGR00080       143 PLAPYDRIYVTAAGPKIP------EALIDQLKEGGILVM  175 (215)
T ss_pred             ccCCCCEEEEcCCccccc------HHHHHhcCcCcEEEE
Confidence            457899999988776663      447778888876544

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.41  E-value=3e-12  Score=119.69  Aligned_cols=114  Identities=16%  Similarity=0.127  Sum_probs=90.7

Q ss_pred             HHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC--CCC
Q 020988          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFA  234 (319)
Q Consensus       157 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~  234 (319)
                      .+.+.+....+..+||||||+|.++..+++..|...++|+|+++.+++.+.+++...+   ..|+.++++|+..+  .++
T Consensus       113 ~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~g---L~NV~~i~~DA~~ll~~~~  189 (390)
T PRK14121        113 NFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLN---LKNLLIINYDARLLLELLP  189 (390)
T ss_pred             HHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC---CCcEEEEECCHHHhhhhCC
Confidence            4444555566779999999999999999999888899999999999999999887753   56899999999764  467


Q ss_pred             CCCccEEEecccccCCCCH------HHHHHHHHHhhcCCCeeEEE
Q 020988          235 SGFVDAVHAGAALHCWPSP------SNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~------~~~l~el~rvlk~g~~~g~~  273 (319)
                      ++++|.|++.+...|...+      ...++++.|+|++||...+.
T Consensus       190 ~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~  234 (390)
T PRK14121        190 SNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELR  234 (390)
T ss_pred             CCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEE
Confidence            8999999985433222111      57899999999998876554

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.40  E-value=5.1e-12  Score=116.11  Aligned_cols=95  Identities=22%  Similarity=0.237  Sum_probs=74.4

Q ss_pred             HHHHHHHhhc---cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCc--cCCCCeEEEEcCCC
Q 020988          155 FKMAQEYFKS---AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT--ILTSNLALVRADVC  229 (319)
Q Consensus       155 ~~~l~~~l~~---~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~--~~~~~i~~~~~d~~  229 (319)
                      .+.+.+++..   .++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|+++.+....  ....++.+..+|+.
T Consensus       130 v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~--~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~  207 (315)
T PLN02585        130 VEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGA--IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLE  207 (315)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchh
Confidence            3445555543   3578999999999999999999875  999999999999999998765310  01246788888886


Q ss_pred             CCCCCCCCccEEEecccccCCCCHH
Q 020988          230 RLPFASGFVDAVHAGAALHCWPSPS  254 (319)
Q Consensus       230 ~lp~~~~~fD~V~~~~vl~h~~d~~  254 (319)
                      .+   +++||+|++.++++|+++..
T Consensus       208 ~l---~~~fD~Vv~~~vL~H~p~~~  229 (315)
T PLN02585        208 SL---SGKYDTVTCLDVLIHYPQDK  229 (315)
T ss_pred             hc---CCCcCEEEEcCEEEecCHHH
Confidence            54   47899999999999997643

>PLN03075 nicotianamine synthase; Provisional

Probab=99.40  E-value=1e-11  Score=112.17  Aligned_cols=105  Identities=11%  Similarity=0.023  Sum_probs=83.7

Q ss_pred             cCCCeEEEEcCCcChHHHH--HHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEE
Q 020988          165 AQGGLLVDVSCGSGLFSRK--FAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH  242 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~--l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~  242 (319)
                      .++.+|+|||||.|.++..  ++...+..+++|+|+++++++.|++.+... .....+++|.++|+.+.+...+.||+|+
T Consensus       122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~-~gL~~rV~F~~~Da~~~~~~l~~FDlVF  200 (296)
T PLN03075        122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSD-PDLSKRMFFHTADVMDVTESLKEYDVVF  200 (296)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhc-cCccCCcEEEECchhhcccccCCcCEEE
Confidence            3789999999998854433  334567788999999999999999988541 1235689999999988653357899999


Q ss_pred             ecccccCC--CCHHHHHHHHHHhhcCCCeeE
Q 020988          243 AGAALHCW--PSPSNAASVFSSSYSLLSICY  271 (319)
Q Consensus       243 ~~~vl~h~--~d~~~~l~el~rvlk~g~~~g  271 (319)
                      +. +++++  +++.++++.+.+.++|||..-
T Consensus       201 ~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lv  230 (296)
T PLN03075        201 LA-ALVGMDKEEKVKVIEHLGKHMAPGALLM  230 (296)
T ss_pred             Ee-cccccccccHHHHHHHHHHhcCCCcEEE
Confidence            99 99988  688899999999988887543

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.40  E-value=6.6e-12  Score=115.63  Aligned_cols=115  Identities=13%  Similarity=0.062  Sum_probs=94.0

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (319)
                      +.+.+.+...++.+|||||||+|.++..+++..|..+++++|. +.+++.+++++...+  ...+++++.+|+.+.+++ 
T Consensus       139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~g--l~~rv~~~~~d~~~~~~~-  214 (306)
T TIGR02716       139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKG--VADRMRGIAVDIYKESYP-  214 (306)
T ss_pred             HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCC--ccceEEEEecCccCCCCC-
Confidence            3444555556778999999999999999999998889999998 789999999887653  345799999999876664 


Q ss_pred             CCccEEEecccccCCCCH--HHHHHHHHHhhcCCCeeEEEEe
Q 020988          236 GFVDAVHAGAALHCWPSP--SNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~--~~~l~el~rvlk~g~~~g~~~~  275 (319)
                       .+|+|++.+++|++.+.  ...++++.++|+|||...+..+
T Consensus       215 -~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~  255 (306)
T TIGR02716       215 -EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM  255 (306)
T ss_pred             -CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence             36999999999998664  3689999999999987776654

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.39  E-value=6.6e-12  Score=110.97  Aligned_cols=113  Identities=19%  Similarity=0.260  Sum_probs=92.8

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-C
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-F  233 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~  233 (319)
                      .+.+...+...++.+|||||||+|.++..+.+.+.  +++++|+++.+++.+++++...    ..++.+...|+...+ .
T Consensus        37 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~~~  110 (233)
T PRK05134         37 LNYIREHAGGLFGKRVLDVGCGGGILSESMARLGA--DVTGIDASEENIEVARLHALES----GLKIDYRQTTAEELAAE  110 (233)
T ss_pred             HHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCC--eEEEEcCCHHHHHHHHHHHHHc----CCceEEEecCHHHhhhh
Confidence            34555555556788999999999999999988765  8999999999999999887653    235778888887764 3


Q ss_pred             CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988          234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~  273 (319)
                      .+++||+|++.++++|++++..+++.+.++++++|...+.
T Consensus       111 ~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~  150 (233)
T PRK05134        111 HPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFS  150 (233)
T ss_pred             cCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEE
Confidence            4579999999999999999999999999999998875543

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.38  E-value=9.6e-12  Score=116.69  Aligned_cols=121  Identities=12%  Similarity=0.093  Sum_probs=93.7

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (319)
Q Consensus       154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (319)
                      -.+.+.+.++...+++|||+|||+|.++..+++.+|..+|+++|.|+.+++.++++++.++.....+++++..|.... +
T Consensus       216 GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~  294 (378)
T PRK15001        216 GARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-V  294 (378)
T ss_pred             HHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-C
Confidence            356777777766667999999999999999999988889999999999999999998765321123688888887542 2


Q ss_pred             CCCCccEEEecccccCC---CC--HHHHHHHHHHhhcCCCeeEEEEe
Q 020988          234 ASGFVDAVHAGAALHCW---PS--PSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       234 ~~~~fD~V~~~~vl~h~---~d--~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      .+++||+|+++-.+|..   .+  ..++++++.++|+++|.+.++.-
T Consensus       295 ~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n  341 (378)
T PRK15001        295 EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN  341 (378)
T ss_pred             CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence            34689999998666543   22  24678888999999998777753

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.37  E-value=1.1e-11  Score=108.81  Aligned_cols=101  Identities=24%  Similarity=0.281  Sum_probs=86.5

Q ss_pred             CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC-CCCccEEEec
Q 020988          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVHAG  244 (319)
Q Consensus       166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~~fD~V~~~  244 (319)
                      .+.+|||+|||+|.++..+++.+.  +++++|+++.+++.+++++...+   ..++.+..+|+.+.+.. .++||+|++.
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~~D~i~~~  119 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLGA--NVTGIDASEENIEVAKLHAKKDP---LLKIEYRCTSVEDLAEKGAKSFDVVTCM  119 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHcC---CCceEEEeCCHHHhhcCCCCCccEEEeh
Confidence            478999999999999999988766  79999999999999999876531   22688888998877644 3789999999


Q ss_pred             ccccCCCCHHHHHHHHHHhhcCCCeeE
Q 020988          245 AALHCWPSPSNAASVFSSSYSLLSICY  271 (319)
Q Consensus       245 ~vl~h~~d~~~~l~el~rvlk~g~~~g  271 (319)
                      ++++|+.++...++++.++++++|...
T Consensus       120 ~~l~~~~~~~~~l~~~~~~L~~gG~l~  146 (224)
T TIGR01983       120 EVLEHVPDPQAFIRACAQLLKPGGILF  146 (224)
T ss_pred             hHHHhCCCHHHHHHHHHHhcCCCcEEE
Confidence            999999999999999999999987644

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.35  E-value=2.6e-11  Score=112.93  Aligned_cols=116  Identities=13%  Similarity=0.127  Sum_probs=92.2

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (319)
Q Consensus       154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (319)
                      -.+.+.+.+.....++|||+|||+|.++..+++.++..+|+++|+|+.+++.++++++.++    ...+++..|+...  
T Consensus       184 gt~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~----l~~~~~~~D~~~~--  257 (342)
T PRK09489        184 GSQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANG----LEGEVFASNVFSD--  257 (342)
T ss_pred             HHHHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCEEEEcccccc--
Confidence            3456666666555679999999999999999998887899999999999999999987752    2356777787542  


Q ss_pred             CCCCccEEEecccccCCC-----CHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          234 ASGFVDAVHAGAALHCWP-----SPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~-----d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      .+++||+|+++..+|+..     ....+++++.+.|+++|.+.++..
T Consensus       258 ~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan  304 (342)
T PRK09489        258 IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN  304 (342)
T ss_pred             cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence            257899999998887632     246778899999999998876654

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.33  E-value=4e-11  Score=103.49  Aligned_cols=112  Identities=14%  Similarity=0.176  Sum_probs=88.0

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-CC
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PF  233 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~  233 (319)
                      ......+...++.+|||+|||+|.++..+++. ++..+|+++|+++.+++.++++++..+  ...++.++.+|+.+. +.
T Consensus        30 ~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g--~~~~v~~~~~d~~~~l~~  107 (198)
T PRK00377         30 ALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG--VLNNIVLIKGEAPEILFT  107 (198)
T ss_pred             HHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhC--CCCCeEEEEechhhhHhh
Confidence            34445667778999999999999999988765 455689999999999999999887652  135789999998763 33


Q ss_pred             CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEE
Q 020988          234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYL  272 (319)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~  272 (319)
                      ..+.||.|++..   ...++...++++.++|+|+|...+
T Consensus       108 ~~~~~D~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~  143 (198)
T PRK00377        108 INEKFDRIFIGG---GSEKLKEIISASWEIIKKGGRIVI  143 (198)
T ss_pred             cCCCCCEEEECC---CcccHHHHHHHHHHHcCCCcEEEE
Confidence            346899999864   244677889999999999887654

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.32  E-value=4.8e-11  Score=104.03  Aligned_cols=108  Identities=16%  Similarity=0.084  Sum_probs=84.4

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (319)
                      ...+...+...++.+|||||||+|.++..+++...  +++++|+++++++.++++++..+   ..++.+..+|..+....
T Consensus        67 ~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~~~  141 (212)
T PRK00312         67 VARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLG---LHNVSVRHGDGWKGWPA  141 (212)
T ss_pred             HHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCC---CCceEEEECCcccCCCc
Confidence            45556667777889999999999999988887754  89999999999999999987652   44689999998653223


Q ss_pred             CCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988          235 SGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~  273 (319)
                      .++||+|++...+++++      +.+.+.|+++|...+.
T Consensus       142 ~~~fD~I~~~~~~~~~~------~~l~~~L~~gG~lv~~  174 (212)
T PRK00312        142 YAPFDRILVTAAAPEIP------RALLEQLKEGGILVAP  174 (212)
T ss_pred             CCCcCEEEEccCchhhh------HHHHHhcCCCcEEEEE
Confidence            47899999988777662      4567788887765443

>PRK14968 putative methyltransferase; Provisional

Probab=99.31  E-value=3.9e-11  Score=102.17  Aligned_cols=118  Identities=19%  Similarity=0.177  Sum_probs=86.7

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (319)
Q Consensus       154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (319)
                      ....+.+.+...++.+|||+|||+|.++..+++.+  .+++|+|+|+.+++.+++++...+.. ..++.++.+|+.+ ++
T Consensus        11 ~~~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~--~~v~~~D~s~~~~~~a~~~~~~~~~~-~~~~~~~~~d~~~-~~   86 (188)
T PRK14968         11 DSFLLAENAVDKKGDRVLEVGTGSGIVAIVAAKNG--KKVVGVDINPYAVECAKCNAKLNNIR-NNGVEVIRSDLFE-PF   86 (188)
T ss_pred             hHHHHHHhhhccCCCEEEEEccccCHHHHHHHhhc--ceEEEEECCHHHHHHHHHHHHHcCCC-CcceEEEeccccc-cc
Confidence            34455555655678899999999999999999885  49999999999999999988664211 1128888888866 34


Q ss_pred             CCCCccEEEecccccCCC---------------------CHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          234 ASGFVDAVHAGAALHCWP---------------------SPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~---------------------d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      .+++||+|+++..+.+..                     ....+++++.++||++|...+++.
T Consensus        87 ~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~  149 (188)
T PRK14968         87 RGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS  149 (188)
T ss_pred             cccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence            456899999876543311                     124568888899999887665544

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.30  E-value=1.1e-11  Score=97.48  Aligned_cols=105  Identities=16%  Similarity=0.254  Sum_probs=82.9

Q ss_pred             CCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC--CCCCCccEEEec
Q 020988          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVHAG  244 (319)
Q Consensus       167 ~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~V~~~  244 (319)
                      |.+|||+|||+|.++..+++.+ ..+++|+|+++..++.+++++...+  ...+++++++|+.+..  +.+++||+|+++
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~n   77 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNG--LDDRVEVIVGDARDLPEPLPDGKFDLIVTN   77 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCT--TTTTEEEEESHHHHHHHTCTTT-EEEEEE-
T ss_pred             CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHcc--CCceEEEEECchhhchhhccCceeEEEEEC
Confidence            4689999999999999999998 5699999999999999999988753  2457999999998865  678999999998


Q ss_pred             ccccCCC-C-------HHHHHHHHHHhhcCCCeeEEEE
Q 020988          245 AALHCWP-S-------PSNAASVFSSSYSLLSICYLLQ  274 (319)
Q Consensus       245 ~vl~h~~-d-------~~~~l~el~rvlk~g~~~g~~~  274 (319)
                      --+.... +       ...+++++.++||++|...++.
T Consensus        78 pP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~  115 (117)
T PF13659_consen   78 PPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT  115 (117)
T ss_dssp             -STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence            7554321 1       2466888888888888777654

...

>PRK04266 fibrillarin; Provisional

Probab=99.30  E-value=6.9e-11  Score=103.85  Aligned_cols=101  Identities=16%  Similarity=0.133  Sum_probs=79.9

Q ss_pred             hhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC----CCCCCC
Q 020988          162 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PFASGF  237 (319)
Q Consensus       162 l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l----p~~~~~  237 (319)
                      +...++.+|||+|||+|.++..+++..+..+|+|+|+++.|++.+.++.+.     ..++.++.+|+...    ++. ++
T Consensus        68 l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~-----~~nv~~i~~D~~~~~~~~~l~-~~  141 (226)
T PRK04266         68 FPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE-----RKNIIPILADARKPERYAHVV-EK  141 (226)
T ss_pred             CCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh-----cCCcEEEECCCCCcchhhhcc-cc
Confidence            666788999999999999999999875445899999999999988777654     25789999998652    223 56


Q ss_pred             ccEEEecccccCCCCHH---HHHHHHHHhhcCCCeeEEE
Q 020988          238 VDAVHAGAALHCWPSPS---NAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       238 fD~V~~~~vl~h~~d~~---~~l~el~rvlk~g~~~g~~  273 (319)
                      ||+|++.     +.++.   .+++++.++|||||.+.+.
T Consensus       142 ~D~i~~d-----~~~p~~~~~~L~~~~r~LKpGG~lvI~  175 (226)
T PRK04266        142 VDVIYQD-----VAQPNQAEIAIDNAEFFLKDGGYLLLA  175 (226)
T ss_pred             CCEEEEC-----CCChhHHHHHHHHHHHhcCCCcEEEEE
Confidence            9999853     33443   4589999999999988874

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=99.30  E-value=1e-11  Score=103.51  Aligned_cols=83  Identities=22%  Similarity=0.181  Sum_probs=72.1

Q ss_pred             EEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988          194 VALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       194 ~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~  273 (319)
                      +|+|+|++|++.|+++....+.....+++++++|+.++|+.+++||+|++..+++|++|+..++++++|+|||||.+.++
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~   80 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL   80 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence            48999999999998876532111234799999999999999999999999999999999999999999999999999888


Q ss_pred             Eee
Q 020988          274 QFR  276 (319)
Q Consensus       274 ~~~  276 (319)
                      .+.
T Consensus        81 d~~   83 (160)
T PLN02232         81 DFN   83 (160)
T ss_pred             ECC
Confidence            774

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.30  E-value=5e-11  Score=110.88  Aligned_cols=124  Identities=17%  Similarity=0.187  Sum_probs=95.3

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (319)
                      ...+.......++.+|||+|||+|.++..++..+.  +++|+|+++.|++.++++++..+   ..++.++.+|+.++|+.
T Consensus       171 a~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~--~v~g~Di~~~~~~~a~~nl~~~g---~~~i~~~~~D~~~l~~~  245 (329)
T TIGR01177       171 ARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGA--KVIGCDIDWKMVAGARINLEHYG---IEDFFVKRGDATKLPLS  245 (329)
T ss_pred             HHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCC--eEEEEcCCHHHHHHHHHHHHHhC---CCCCeEEecchhcCCcc
Confidence            34455555567788999999999999988877665  99999999999999999987753   34588999999999988


Q ss_pred             CCCccEEEecccc------c-C-CCC-HHHHHHHHHHhhcCCCeeEEEEeeccchhcc
Q 020988          235 SGFVDAVHAGAAL------H-C-WPS-PSNAASVFSSSYSLLSICYLLQFRYTKIIEL  283 (319)
Q Consensus       235 ~~~fD~V~~~~vl------~-h-~~d-~~~~l~el~rvlk~g~~~g~~~~~~~~~~~~  283 (319)
                      +++||+|++.--.      . + ..+ ...+++++.++|+++|....++.......+.
T Consensus       246 ~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~~~~~  303 (329)
T TIGR01177       246 SESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRIDLESL  303 (329)
T ss_pred             cCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCCCHHHH
Confidence            8899999996321      1 1 101 3678999999999999887776654444433

This family is found exclusively in the Archaea.

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.30  E-value=9.4e-11  Score=100.96  Aligned_cols=114  Identities=10%  Similarity=0.005  Sum_probs=86.9

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC-CCC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPF  233 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~  233 (319)
                      ...+...+...++.+|||+|||+|.++..+++..+..+|+++|+|+.+++.++++++..+   ..+++++.+|+.+ ++.
T Consensus        29 ~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~---~~~v~~~~~d~~~~~~~  105 (196)
T PRK07402         29 RLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFG---VKNVEVIEGSAPECLAQ  105 (196)
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC---CCCeEEEECchHHHHhh
Confidence            345666777678899999999999999999877666799999999999999999887653   3578999998864 222


Q ss_pred             CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      ....+|.|+...    ..+....++++.++|+|+|.+.+...
T Consensus       106 ~~~~~d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~  143 (196)
T PRK07402        106 LAPAPDRVCIEG----GRPIKEILQAVWQYLKPGGRLVATAS  143 (196)
T ss_pred             CCCCCCEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence            223467776532    23557889999999999887666554

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.30  E-value=7.9e-11  Score=102.89  Aligned_cols=111  Identities=17%  Similarity=0.183  Sum_probs=88.4

Q ss_pred             ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhh---------cCccCCCCeEEEEcCCCCCCCC
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ---------DNTILTSNLALVRADVCRLPFA  234 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~---------~~~~~~~~i~~~~~d~~~lp~~  234 (319)
                      ..++++||+.|||.|..+..|++.|.  +|+|+|+|+.+++.+.+....         .......+++++++|+.+++..
T Consensus        41 ~~~~~rvLvPgCGkg~D~~~LA~~G~--~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~  118 (226)
T PRK13256         41 INDSSVCLIPMCGCSIDMLFFLSKGV--KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKI  118 (226)
T ss_pred             CCCCCeEEEeCCCChHHHHHHHhCCC--cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcc
Confidence            34578999999999999999999998  899999999999998663210         0001235789999999998642


Q ss_pred             ---CCCccEEEecccccCCCCH--HHHHHHHHHhhcCCCeeEEEEee
Q 020988          235 ---SGFVDAVHAGAALHCWPSP--SNAASVFSSSYSLLSICYLLQFR  276 (319)
Q Consensus       235 ---~~~fD~V~~~~vl~h~~d~--~~~l~el~rvlk~g~~~g~~~~~  276 (319)
                         .+.||+|+-..++++++..  .+..+.+.++++|++..-.+.+.
T Consensus       119 ~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~  165 (226)
T PRK13256        119 ANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVME  165 (226)
T ss_pred             ccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence               2689999999999999643  46688899999999888777764

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=99.26  E-value=2.9e-11  Score=104.17  Aligned_cols=103  Identities=19%  Similarity=0.173  Sum_probs=78.4

Q ss_pred             eEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEeccccc
Q 020988          169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALH  248 (319)
Q Consensus       169 ~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~  248 (319)
                      .++|||||+|..++.++....  +|+|+|+|+.|++.|++.....  +......+...++..|--.++++|+|++..++|
T Consensus        36 ~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~~--y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~H  111 (261)
T KOG3010|consen   36 LAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPVT--YCHTPSTMSSDEMVDLLGGEESVDLITAAQAVH  111 (261)
T ss_pred             eEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCcc--cccCCccccccccccccCCCcceeeehhhhhHH
Confidence            899999999988888888755  9999999999999998864321  111222333334444433489999999999999


Q ss_pred             CCCCHHHHHHHHHHhhcCCC-eeEEEEee
Q 020988          249 CWPSPSNAASVFSSSYSLLS-ICYLLQFR  276 (319)
Q Consensus       249 h~~d~~~~l~el~rvlk~g~-~~g~~~~~  276 (319)
                      ++ |.+++.+++.|+||+-| .+.++.+.
T Consensus       112 WF-dle~fy~~~~rvLRk~Gg~iavW~Y~  139 (261)
T KOG3010|consen  112 WF-DLERFYKEAYRVLRKDGGLIAVWNYN  139 (261)
T ss_pred             hh-chHHHHHHHHHHcCCCCCEEEEEEcc
Confidence            98 88999999999998766 66666664

>TIGR03438 probable methyltransferase

Probab=99.24  E-value=2e-10  Score=105.53  Aligned_cols=104  Identities=14%  Similarity=0.109  Sum_probs=74.9

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC-CCCCCC----Cc
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFASG----FV  238 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~~~~----~f  238 (319)
                      .++.+|||+|||+|..+..+++... ..+|+|+|+|++|++.+++++....  ...++.++++|+.+ +++...    ..
T Consensus        62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~--p~~~v~~i~gD~~~~~~~~~~~~~~~~  139 (301)
T TIGR03438        62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY--PQLEVHGICADFTQPLALPPEPAAGRR  139 (301)
T ss_pred             CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC--CCceEEEEEEcccchhhhhcccccCCe
Confidence            3568999999999999999998854 3589999999999999999876531  12346778999976 344332    23


Q ss_pred             cEEEecccccCCCC--HHHHHHHHHHhhcCCCee
Q 020988          239 DAVHAGAALHCWPS--PSNAASVFSSSYSLLSIC  270 (319)
Q Consensus       239 D~V~~~~vl~h~~d--~~~~l~el~rvlk~g~~~  270 (319)
                      .++++..++.|++.  ...++++++++|+|||.+
T Consensus       140 ~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~  173 (301)
T TIGR03438       140 LGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGL  173 (301)
T ss_pred             EEEEecccccCCCHHHHHHHHHHHHHhcCCCCEE
Confidence            34555567888853  234677777777776544

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.24  E-value=2.1e-10  Score=98.05  Aligned_cols=108  Identities=14%  Similarity=0.087  Sum_probs=88.9

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (319)
                      ..++.+.+...++.+|||||||+|+.+.-+++...  +|+.+|..+...+.|+++++..+   ..|+.++++|...=--.
T Consensus        61 vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg---~~nV~v~~gDG~~G~~~  135 (209)
T COG2518          61 VARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLG---YENVTVRHGDGSKGWPE  135 (209)
T ss_pred             HHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcC---CCceEEEECCcccCCCC
Confidence            45677788889999999999999999999999876  99999999999999999998873   55799999998764334


Q ss_pred             CCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988          235 SGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~  273 (319)
                      ..+||.|+.+.+...+|..      +.+-||+||..-+-
T Consensus       136 ~aPyD~I~Vtaaa~~vP~~------Ll~QL~~gGrlv~P  168 (209)
T COG2518         136 EAPYDRIIVTAAAPEVPEA------LLDQLKPGGRLVIP  168 (209)
T ss_pred             CCCcCEEEEeeccCCCCHH------HHHhcccCCEEEEE
Confidence            5899999999998888643      44556666654433

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.23  E-value=4.1e-10  Score=94.28  Aligned_cols=114  Identities=17%  Similarity=0.134  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC
Q 020988          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (319)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (319)
                      .+........|.+.++.+++|||||||..+..++..++..+|+++|-++++++..+++..+.+   .+|+.++.+++.+.
T Consensus        20 ~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg---~~n~~vv~g~Ap~~   96 (187)
T COG2242          20 EEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG---VDNLEVVEGDAPEA   96 (187)
T ss_pred             HHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC---CCcEEEEeccchHh
Confidence            334556677788899999999999999999999988999999999999999999999998873   78999999999764


Q ss_pred             CCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEE
Q 020988          232 PFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYL  272 (319)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~  272 (319)
                      --...++|.|+..+. .   +.+..++.+...||++|..-.
T Consensus        97 L~~~~~~daiFIGGg-~---~i~~ile~~~~~l~~ggrlV~  133 (187)
T COG2242          97 LPDLPSPDAIFIGGG-G---NIEEILEAAWERLKPGGRLVA  133 (187)
T ss_pred             hcCCCCCCEEEECCC-C---CHHHHHHHHHHHcCcCCeEEE
Confidence            212237999999988 4   446677778888888775543

>PRK14967 putative methyltransferase; Provisional

Probab=99.23  E-value=2e-10  Score=101.00  Aligned_cols=104  Identities=18%  Similarity=0.152  Sum_probs=78.3

Q ss_pred             ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (319)
                      ..++.+|||+|||+|.++..+++.+ ..+++++|+++.+++.+++++...    ..++.++.+|+.+. +.+++||+|++
T Consensus        34 ~~~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~----~~~~~~~~~d~~~~-~~~~~fD~Vi~  107 (223)
T PRK14967         34 LGPGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLA----GVDVDVRRGDWARA-VEFRPFDVVVS  107 (223)
T ss_pred             cCCCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHh----CCeeEEEECchhhh-ccCCCeeEEEE
Confidence            4567899999999999999988864 358999999999999999988664    23578888898663 45679999999


Q ss_pred             cccccCCCC---------------------HHHHHHHHHHhhcCCCeeEEE
Q 020988          244 GAALHCWPS---------------------PSNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       244 ~~vl~h~~d---------------------~~~~l~el~rvlk~g~~~g~~  273 (319)
                      +-...+...                     ...+++++.++||++|.+.++
T Consensus       108 npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~  158 (223)
T PRK14967        108 NPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLV  158 (223)
T ss_pred             CCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            743221111                     234567788888888876544

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.23  E-value=3e-10  Score=101.25  Aligned_cols=76  Identities=21%  Similarity=0.274  Sum_probs=64.7

Q ss_pred             CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecc
Q 020988          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (319)
Q Consensus       166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (319)
                      .+.+|||+|||+|.++..+++..+..+++|+|+++.+++.++++....+   ..++.++.+|+.+ ++.+++||+|+++-
T Consensus        87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~---~~~~~~~~~d~~~-~~~~~~fD~Vi~np  162 (251)
T TIGR03534        87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLG---LDNVTFLQSDWFE-PLPGGKFDLIVSNP  162 (251)
T ss_pred             CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC---CCeEEEEECchhc-cCcCCceeEEEECC
Confidence            4569999999999999999998777799999999999999999887652   3469999999876 45578999999853

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.22  E-value=3.3e-10  Score=103.21  Aligned_cols=74  Identities=19%  Similarity=0.330  Sum_probs=62.6

Q ss_pred             CeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988          168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (319)
Q Consensus       168 ~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (319)
                      .+|||+|||+|.++..+++..+..+|+|+|+|+.+++.|+++....+  ...++.++.+|+.+ ++.+++||+|+++
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~--~~~~v~~~~~d~~~-~~~~~~fDlIvsN  189 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQ--LEHRVEFIQSNLFE-PLAGQKIDIIVSN  189 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEECchhc-cCcCCCccEEEEC
Confidence            69999999999999999998877799999999999999999987653  22359999999865 3444589999996

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.22  E-value=3e-10  Score=95.51  Aligned_cols=117  Identities=9%  Similarity=0.080  Sum_probs=85.2

Q ss_pred             HHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCC
Q 020988          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (319)
Q Consensus       157 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~  236 (319)
                      .+.+.+...++.+|||||||+|.++..+++.+.  +++++|+++.+++.+++++..     ..+++++.+|+.++++++.
T Consensus         4 ~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~~--~v~~vE~~~~~~~~~~~~~~~-----~~~v~ii~~D~~~~~~~~~   76 (169)
T smart00650        4 KIVRAANLRPGDTVLEIGPGKGALTEELLERAA--RVTAIEIDPRLAPRLREKFAA-----ADNLTVIHGDALKFDLPKL   76 (169)
T ss_pred             HHHHhcCCCCcCEEEEECCCccHHHHHHHhcCC--eEEEEECCHHHHHHHHHHhcc-----CCCEEEEECchhcCCcccc
Confidence            344555566788999999999999999998854  999999999999999988753     3589999999999988777


Q ss_pred             CccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEeeccchhccc
Q 020988          237 FVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFRYTKIIELD  284 (319)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~~~~~~~~~  284 (319)
                      +||.|+++--+ |+.  ...+..+.+... ....+.+++.....+...
T Consensus        77 ~~d~vi~n~Py-~~~--~~~i~~~l~~~~-~~~~~~l~~q~e~a~rl~  120 (169)
T smart00650       77 QPYKVVGNLPY-NIS--TPILFKLLEEPP-AFRDAVLMVQKEVARRLA  120 (169)
T ss_pred             CCCEEEECCCc-ccH--HHHHHHHHhcCC-CcceEEEEEEHHHhHHhc
Confidence            89999886443 331  233333333211 336777777665554433

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.20  E-value=2.9e-10  Score=103.80  Aligned_cols=103  Identities=18%  Similarity=0.171  Sum_probs=77.8

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (319)
                      .++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.|+++...++  ...++.+...+..  +..+++||+|+++
T Consensus       158 ~~g~~VLDvGcGsG~lai~aa~~g-~~~V~avDid~~al~~a~~n~~~n~--~~~~~~~~~~~~~--~~~~~~fDlVvan  232 (288)
T TIGR00406       158 LKDKNVIDVGCGSGILSIAALKLG-AAKVVGIDIDPLAVESARKNAELNQ--VSDRLQVKLIYLE--QPIEGKADVIVAN  232 (288)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHcC--CCcceEEEecccc--cccCCCceEEEEe
Confidence            467899999999999998888775 3589999999999999999987653  2234566666533  2335799999997


Q ss_pred             ccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          245 AALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       245 ~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      ...++   ...++.++.+++||+|.+.+..+
T Consensus       233 ~~~~~---l~~ll~~~~~~LkpgG~li~sgi  260 (288)
T TIGR00406       233 ILAEV---IKELYPQFSRLVKPGGWLILSGI  260 (288)
T ss_pred             cCHHH---HHHHHHHHHHHcCCCcEEEEEeC
Confidence            65443   34678889999999887655444

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.20  E-value=3.5e-10  Score=102.96  Aligned_cols=77  Identities=19%  Similarity=0.217  Sum_probs=64.4

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (319)
                      .++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.|++++...+  ...++.++.+|+.+ ++++++||+|+++
T Consensus       120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~--~~~~i~~~~~D~~~-~~~~~~fD~Iv~N  196 (284)
T TIGR03533       120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHG--LEDRVTLIQSDLFA-ALPGRKYDLIVSN  196 (284)
T ss_pred             CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEECchhh-ccCCCCccEEEEC
Confidence            34579999999999999999998777799999999999999999987653  23479999999854 2345689999986

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.19  E-value=3.1e-10  Score=104.57  Aligned_cols=108  Identities=11%  Similarity=0.105  Sum_probs=83.6

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (319)
                      ..+.+.+...++.+|||||||+|.++..+++... ...|+++|+++++++.|+++++..+   ..++.++.+|+...+..
T Consensus        70 a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g---~~nV~~i~gD~~~~~~~  146 (322)
T PRK13943         70 ALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLG---IENVIFVCGDGYYGVPE  146 (322)
T ss_pred             HHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC---CCcEEEEeCChhhcccc
Confidence            3444555667789999999999999999988753 2469999999999999999887653   45789999998776555


Q ss_pred             CCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEE
Q 020988          235 SGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYL  272 (319)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~  272 (319)
                      .++||+|++...+++++      ..+.+.|+++|...+
T Consensus       147 ~~~fD~Ii~~~g~~~ip------~~~~~~LkpgG~Lvv  178 (322)
T PRK13943        147 FAPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIV  178 (322)
T ss_pred             cCCccEEEECCchHHhH------HHHHHhcCCCCEEEE
Confidence            57899999987766653      236678888876443

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.19  E-value=2.4e-10  Score=94.42  Aligned_cols=103  Identities=19%  Similarity=0.289  Sum_probs=77.9

Q ss_pred             CeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 020988          168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAAL  247 (319)
Q Consensus       168 ~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl  247 (319)
                      .+|||+|||+|.++..|++.+.....+|+|.|+.+++.|+...+..+  ....|+|.+.|+....+..++||+|+--+++
T Consensus        69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~--~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~  146 (227)
T KOG1271|consen   69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDG--FSNEIRFQQLDITDPDFLSGQFDLVLDKGTL  146 (227)
T ss_pred             cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcC--CCcceeEEEeeccCCcccccceeEEeecCce
Confidence            49999999999999999999877779999999999999988776653  2334999999999877777899999976655


Q ss_pred             cCC---CC-----HHHHHHHHHHhhcCCCeeEEEEe
Q 020988          248 HCW---PS-----PSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       248 ~h~---~d-----~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      ..+   +|     +...+..+.++|+|+|   ++++
T Consensus       147 DAisLs~d~~~~r~~~Y~d~v~~ll~~~g---ifvI  179 (227)
T KOG1271|consen  147 DAISLSPDGPVGRLVVYLDSVEKLLSPGG---IFVI  179 (227)
T ss_pred             eeeecCCCCcccceeeehhhHhhccCCCc---EEEE
Confidence            433   12     1233445555655554   5544

>PHA03411 putative methyltransferase; Provisional

Probab=99.19  E-value=3.5e-10  Score=100.90  Aligned_cols=95  Identities=14%  Similarity=0.152  Sum_probs=73.7

Q ss_pred             CCCCCcHHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEE
Q 020988          146 SGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR  225 (319)
Q Consensus       146 ~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~  225 (319)
                      ..|+.|......+.  +.....++|||+|||+|.++..+++..+..+|+|+|+++.+++.+++++        +++.+++
T Consensus        46 G~FfTP~~i~~~f~--~~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~--------~~v~~v~  115 (279)
T PHA03411         46 GAFFTPEGLAWDFT--IDAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL--------PEAEWIT  115 (279)
T ss_pred             eeEcCCHHHHHHHH--hccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC--------cCCEEEE
Confidence            34666766653332  2334568999999999999988877654469999999999999998863        3688999


Q ss_pred             cCCCCCCCCCCCccEEEecccccCCC
Q 020988          226 ADVCRLPFASGFVDAVHAGAALHCWP  251 (319)
Q Consensus       226 ~d~~~lp~~~~~fD~V~~~~vl~h~~  251 (319)
                      +|+.++.. +++||+|+++..+.|.+
T Consensus       116 ~D~~e~~~-~~kFDlIIsNPPF~~l~  140 (279)
T PHA03411        116 SDVFEFES-NEKFDVVISNPPFGKIN  140 (279)
T ss_pred             Cchhhhcc-cCCCcEEEEcCCccccC
Confidence            99988753 46899999998888754

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=99.18  E-value=2.1e-10  Score=97.50  Aligned_cols=100  Identities=27%  Similarity=0.382  Sum_probs=75.7

Q ss_pred             CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCC-CCCCCCCCccEEEec
Q 020988          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC-RLPFASGFVDAVHAG  244 (319)
Q Consensus       166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~-~lp~~~~~fD~V~~~  244 (319)
                      .+.-|||||||+|.-+..+.+.|.  ..+|+|+|+.|++.|.++--        .-+++.+|+- -+||+.++||.|++.
T Consensus        50 ~~~~iLDIGCGsGLSg~vL~~~Gh--~wiGvDiSpsML~~a~~~e~--------egdlil~DMG~GlpfrpGtFDg~ISI  119 (270)
T KOG1541|consen   50 KSGLILDIGCGSGLSGSVLSDSGH--QWIGVDISPSMLEQAVEREL--------EGDLILCDMGEGLPFRPGTFDGVISI  119 (270)
T ss_pred             CCcEEEEeccCCCcchheeccCCc--eEEeecCCHHHHHHHHHhhh--------hcCeeeeecCCCCCCCCCccceEEEe
Confidence            478899999999999999999887  89999999999999986421        1357777874 489999999999998


Q ss_pred             ccccCCC-------CHHH----HHHHHHHhhcCCCeeEEEEe
Q 020988          245 AALHCWP-------SPSN----AASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       245 ~vl~h~~-------d~~~----~l~el~rvlk~g~~~g~~~~  275 (319)
                      .++.++-       +|..    ++.-++.+++.++..-.-++
T Consensus       120 SAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfY  161 (270)
T KOG1541|consen  120 SAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFY  161 (270)
T ss_pred             eeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEec
Confidence            7766543       2332    34556667777765544433

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.17  E-value=1.7e-10  Score=100.02  Aligned_cols=109  Identities=16%  Similarity=0.112  Sum_probs=79.6

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (319)
                      ...+.+.+...++.+|||||||+|+++..++.. ++...|+++|.++..++.|++++...+   ..++.++.+|...-..
T Consensus        61 ~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~---~~nv~~~~gdg~~g~~  137 (209)
T PF01135_consen   61 VARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLG---IDNVEVVVGDGSEGWP  137 (209)
T ss_dssp             HHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHT---THSEEEEES-GGGTTG
T ss_pred             HHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhc---cCceeEEEcchhhccc
Confidence            456667788889999999999999999999887 444479999999999999999998763   4589999999866433


Q ss_pred             CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      ...+||.|++......+|  ..    +.+.|+   ++|.+++
T Consensus       138 ~~apfD~I~v~~a~~~ip--~~----l~~qL~---~gGrLV~  170 (209)
T PF01135_consen  138 EEAPFDRIIVTAAVPEIP--EA----LLEQLK---PGGRLVA  170 (209)
T ss_dssp             GG-SEEEEEESSBBSS----HH----HHHTEE---EEEEEEE
T ss_pred             cCCCcCEEEEeeccchHH--HH----HHHhcC---CCcEEEE
Confidence            457999999999887664  22    444444   4555555

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.17  E-value=3.7e-10  Score=99.29  Aligned_cols=117  Identities=9%  Similarity=0.133  Sum_probs=91.3

Q ss_pred             HHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC--CC
Q 020988          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FA  234 (319)
Q Consensus       157 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~  234 (319)
                      .+..+......++|||+|||+|..+..++++.+..+++|||+.+.+.+.|+++++.++  +..+++++++|+.++.  ..
T Consensus        35 LL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~--l~~ri~v~~~Di~~~~~~~~  112 (248)
T COG4123          35 LLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNP--LEERIQVIEADIKEFLKALV  112 (248)
T ss_pred             HHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCc--chhceeEehhhHHHhhhccc
Confidence            4445555566899999999999999999998666899999999999999999987753  5689999999998864  33


Q ss_pred             CCCccEEEecccccCCC------------------CHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          235 SGFVDAVHAGAALHCWP------------------SPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       235 ~~~fD~V~~~~vl~h~~------------------d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      ..+||+|+|+--..-..                  +.+..++...+++|++|.+.++..
T Consensus       113 ~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r  171 (248)
T COG4123         113 FASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR  171 (248)
T ss_pred             ccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec
Confidence            45799999975433221                  224456677778999988887766

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.17  E-value=4.3e-10  Score=84.66  Aligned_cols=100  Identities=20%  Similarity=0.247  Sum_probs=80.8

Q ss_pred             eEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC-CCCCccEEEecccc
Q 020988          169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-ASGFVDAVHAGAAL  247 (319)
Q Consensus       169 ~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-~~~~fD~V~~~~vl  247 (319)
                      +|+|+|||+|.++..+.+ ....+++++|+++.+++.+++.....   ...++.++..|+.+... ..++||+|++..++
T Consensus         1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~   76 (107)
T cd02440           1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAAL---LADNVEVLKGDAEELPPEADESFDVIISDPPL   76 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcc---cccceEEEEcChhhhccccCCceEEEEEccce
Confidence            589999999999999988 34569999999999999888533222   34678999999887653 45789999999999


Q ss_pred             cC-CCCHHHHHHHHHHhhcCCCeeEE
Q 020988          248 HC-WPSPSNAASVFSSSYSLLSICYL  272 (319)
Q Consensus       248 ~h-~~d~~~~l~el~rvlk~g~~~g~  272 (319)
                      ++ ..+....++.+.+.++++|...+
T Consensus        77 ~~~~~~~~~~l~~~~~~l~~~g~~~~  102 (107)
T cd02440          77 HHLVEDLARFLEEARRLLKPGGVLVL  102 (107)
T ss_pred             eehhhHHHHHHHHHHHHcCCCCEEEE
Confidence            99 77778888888999888775543

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.14  E-value=1.1e-09  Score=100.58  Aligned_cols=75  Identities=20%  Similarity=0.219  Sum_probs=63.1

Q ss_pred             CCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (319)
Q Consensus       167 ~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (319)
                      ..+|||+|||+|.++..+++..+..+|+++|+|+.+++.|+++++..+  ...++.++.+|+.+ ++++++||+|+++
T Consensus       134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~--l~~~i~~~~~D~~~-~l~~~~fDlIvsN  208 (307)
T PRK11805        134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHG--LEDRVTLIESDLFA-ALPGRRYDLIVSN  208 (307)
T ss_pred             CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC--CCCcEEEEECchhh-hCCCCCccEEEEC
Confidence            368999999999999999998777899999999999999999987653  22469999999854 2235689999986

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=99.12  E-value=7.5e-10  Score=96.73  Aligned_cols=117  Identities=19%  Similarity=0.235  Sum_probs=85.0

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcC---------ccCCCCeEEEEc
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN---------TILTSNLALVRA  226 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~---------~~~~~~i~~~~~  226 (319)
                      ....+.+...++.+||..|||.|..+..|++.|.  +|+|+|+|+.+++.+.+......         .....+|+++++
T Consensus        27 ~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~--~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~g  104 (218)
T PF05724_consen   27 VEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGH--DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCG  104 (218)
T ss_dssp             HHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTE--EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES
T ss_pred             HHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCC--eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEc
Confidence            3333335556778999999999999999999998  99999999999999854332100         012347899999


Q ss_pred             CCCCCCCCC-CCccEEEecccccCCCC--HHHHHHHHHHhhcCCCeeEEEE
Q 020988          227 DVCRLPFAS-GFVDAVHAGAALHCWPS--PSNAASVFSSSYSLLSICYLLQ  274 (319)
Q Consensus       227 d~~~lp~~~-~~fD~V~~~~vl~h~~d--~~~~l~el~rvlk~g~~~g~~~  274 (319)
                      |+..++... ++||+|+=...|+-++.  ..+..+.+.++++|++.+-++.
T Consensus       105 DfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~  155 (218)
T PF05724_consen  105 DFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLIT  155 (218)
T ss_dssp             -TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEE
T ss_pred             ccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence            999987443 58999999998888853  3466778888888887743333

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.11  E-value=1.4e-09  Score=97.68  Aligned_cols=117  Identities=12%  Similarity=0.224  Sum_probs=94.2

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (319)
Q Consensus       154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (319)
                      -.+.+.+-++...+++|||+|||.|.++..+++..|..+++-+|.|..+++.+++++..++   ..+..++..|..+ +.
T Consensus       146 GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~---~~~~~v~~s~~~~-~v  221 (300)
T COG2813         146 GSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANG---VENTEVWASNLYE-PV  221 (300)
T ss_pred             HHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcC---CCccEEEEecccc-cc
Confidence            3678888888777889999999999999999999999999999999999999999998763   3343455555543 44


Q ss_pred             CCCCccEEEecccccCCCCH-----HHHHHHHHHhhcCCCeeEEEEe
Q 020988          234 ASGFVDAVHAGAALHCWPSP-----SNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~-----~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      .+ +||+|+++--+|-=.+.     .+++++..+.|++||.+.++.-
T Consensus       222 ~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan  267 (300)
T COG2813         222 EG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN  267 (300)
T ss_pred             cc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence            44 99999999877743332     2678888889999998888776

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.11  E-value=8.2e-10  Score=94.48  Aligned_cols=106  Identities=17%  Similarity=0.140  Sum_probs=76.8

Q ss_pred             HhhccCCCeEEEEcCCcChHHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-------
Q 020988          161 YFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-------  232 (319)
Q Consensus       161 ~l~~~~~~~VLDiGcG~G~~~~~l~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-------  232 (319)
                      +-...++.+|||+|||+|.++..+++.. ...+++++|+|+.+      .        ..++.++++|+.+.+       
T Consensus        27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~--------~~~i~~~~~d~~~~~~~~~l~~   92 (188)
T TIGR00438        27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------P--------IENVDFIRGDFTDEEVLNKIRE   92 (188)
T ss_pred             hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------c--------CCCceEEEeeCCChhHHHHHHH
Confidence            3345678999999999999999888774 34579999999854      1        246788888987643       


Q ss_pred             -CCCCCccEEEecccc--------cCCC---CHHHHHHHHHHhhcCCCeeEEEEeeccch
Q 020988          233 -FASGFVDAVHAGAAL--------HCWP---SPSNAASVFSSSYSLLSICYLLQFRYTKI  280 (319)
Q Consensus       233 -~~~~~fD~V~~~~vl--------~h~~---d~~~~l~el~rvlk~g~~~g~~~~~~~~~  280 (319)
                       +++++||+|++....        +|..   +...+++++.++|+|+|...+..+....+
T Consensus        93 ~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~  152 (188)
T TIGR00438        93 RVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEI  152 (188)
T ss_pred             HhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccH
Confidence             346789999986432        1111   12567889999999999887766654433

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.10  E-value=1.4e-09  Score=104.65  Aligned_cols=122  Identities=14%  Similarity=0.123  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC
Q 020988          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (319)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (319)
                      +.....+...+...++.+|||+|||+|..+..+++..+..+|+++|+++.+++.++++++..+.  ...+.+..+|....
T Consensus       224 d~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~--~~~v~~~~~d~~~~  301 (426)
T TIGR00563       224 DASAQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGL--TIKAETKDGDGRGP  301 (426)
T ss_pred             CHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEeccccccc
Confidence            3344566667777889999999999999999998875456999999999999999999987531  12334466776655


Q ss_pred             CC--CCCCccEEEe------cccccCCCC----------------HHHHHHHHHHhhcCCCeeEEEEe
Q 020988          232 PF--ASGFVDAVHA------GAALHCWPS----------------PSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       232 p~--~~~~fD~V~~------~~vl~h~~d----------------~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      +.  .+++||.|++      .+++.+.++                ..+.+.++.+++||||.......
T Consensus       302 ~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystc  369 (426)
T TIGR00563       302 SQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATC  369 (426)
T ss_pred             cccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            43  4678999995      346766665                24567778888888766554433

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.10  E-value=1.7e-09  Score=94.46  Aligned_cols=119  Identities=17%  Similarity=0.177  Sum_probs=100.2

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (319)
                      ...+...+...++.+|||.|.|+|.++..++.. ++..+|+.+|+.++..+.|+++++..+  ...++++..+|+.+.-+
T Consensus        83 ~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~--l~d~v~~~~~Dv~~~~~  160 (256)
T COG2519          83 AGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFG--LGDRVTLKLGDVREGID  160 (256)
T ss_pred             HHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhc--cccceEEEecccccccc
Confidence            456667788899999999999999999999964 667899999999999999999998863  33458999999988766


Q ss_pred             CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEeeccchh
Q 020988          234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFRYTKII  281 (319)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~~~~~~  281 (319)
                      .+ .||+|+.     -+++|.++++.+.++|+||+....+.....+..
T Consensus       161 ~~-~vDav~L-----Dmp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~  202 (256)
T COG2519         161 EE-DVDAVFL-----DLPDPWNVLEHVSDALKPGGVVVVYSPTVEQVE  202 (256)
T ss_pred             cc-ccCEEEE-----cCCChHHHHHHHHHHhCCCcEEEEEcCCHHHHH
Confidence            54 9999987     589999999999999999987777776444443

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.10  E-value=1.5e-09  Score=104.61  Aligned_cols=117  Identities=15%  Similarity=0.186  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC
Q 020988          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (319)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (319)
                      +.....+...+...++.+|||+|||+|..+..+++.. ...+|+++|+++.+++.++++++..+   ..++.++.+|+..
T Consensus       238 d~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g---~~~v~~~~~D~~~  314 (434)
T PRK14901        238 DRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLG---LKSIKILAADSRN  314 (434)
T ss_pred             CHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcC---CCeEEEEeCChhh
Confidence            3344555566777789999999999999999888863 34589999999999999999988763   4578999999987


Q ss_pred             CC----CCCCCccEEEec------ccccCCCC----------------HHHHHHHHHHhhcCCCeeE
Q 020988          231 LP----FASGFVDAVHAG------AALHCWPS----------------PSNAASVFSSSYSLLSICY  271 (319)
Q Consensus       231 lp----~~~~~fD~V~~~------~vl~h~~d----------------~~~~l~el~rvlk~g~~~g  271 (319)
                      ++    ...++||.|++.      +++.+-++                ..+.++++.+++||||.+.
T Consensus       315 ~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lv  381 (434)
T PRK14901        315 LLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLV  381 (434)
T ss_pred             cccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence            75    445789999963      46666555                2355677777777776554

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.09  E-value=1.3e-09  Score=97.52  Aligned_cols=96  Identities=20%  Similarity=0.200  Sum_probs=69.8

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (319)
                      .++.+|||+|||+|.++..+++.+. .+|+|+|+|+.+++.|++++..++.  ..++.+..+        +.+||+|+++
T Consensus       118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~--~~~~~~~~~--------~~~fD~Vvan  186 (250)
T PRK00517        118 LPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGV--ELNVYLPQG--------DLKADVIVAN  186 (250)
T ss_pred             CCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCC--CceEEEccC--------CCCcCEEEEc
Confidence            4689999999999999998888765 3699999999999999999876421  122222222        2279999986


Q ss_pred             ccccCCCCHHHHHHHHHHhhcCCCeeEEEE
Q 020988          245 AALHCWPSPSNAASVFSSSYSLLSICYLLQ  274 (319)
Q Consensus       245 ~vl~h~~d~~~~l~el~rvlk~g~~~g~~~  274 (319)
                      ...+.   ....++++.+++||+|.+.+..
T Consensus       187 i~~~~---~~~l~~~~~~~LkpgG~lilsg  213 (250)
T PRK00517        187 ILANP---LLELAPDLARLLKPGGRLILSG  213 (250)
T ss_pred             CcHHH---HHHHHHHHHHhcCCCcEEEEEE
Confidence            54322   3466788888988887665543

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.08  E-value=2.4e-09  Score=103.08  Aligned_cols=116  Identities=14%  Similarity=0.159  Sum_probs=85.6

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC--
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--  232 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--  232 (319)
                      ...+...+...++.+|||+|||+|..+..+++..+..+|+++|+++.+++.++++++..+    .++.++.+|+.+++  
T Consensus       233 s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g----~~~~~~~~D~~~~~~~  308 (427)
T PRK10901        233 AQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLG----LKATVIVGDARDPAQW  308 (427)
T ss_pred             HHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcC----CCeEEEEcCcccchhh
Confidence            345555667778999999999999999999988755699999999999999999987753    24688999998764  


Q ss_pred             CCCCCccEEEecc------cccCCC------CH----------HHHHHHHHHhhcCCCeeEEEE
Q 020988          233 FASGFVDAVHAGA------ALHCWP------SP----------SNAASVFSSSYSLLSICYLLQ  274 (319)
Q Consensus       233 ~~~~~fD~V~~~~------vl~h~~------d~----------~~~l~el~rvlk~g~~~g~~~  274 (319)
                      +.+++||.|++..      ++.+-+      .+          .+.++.+.++|||||......
T Consensus       309 ~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvyst  372 (427)
T PRK10901        309 WDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYAT  372 (427)
T ss_pred             cccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            3457899999522      222221      22          245777777888877655443

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.08  E-value=8.9e-11  Score=100.33  Aligned_cols=119  Identities=18%  Similarity=0.203  Sum_probs=87.0

Q ss_pred             CCCCCcHHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEE
Q 020988          146 SGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR  225 (319)
Q Consensus       146 ~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~  225 (319)
                      -++..|....+++.. ....+-.++||+|||||.+...+.....  +++|+|+|.+|++.|.++---      .  ++.+
T Consensus       106 L~Y~vP~~l~emI~~-~~~g~F~~~lDLGCGTGL~G~~lR~~a~--~ltGvDiS~nMl~kA~eKg~Y------D--~L~~  174 (287)
T COG4976         106 LGYSVPELLAEMIGK-ADLGPFRRMLDLGCGTGLTGEALRDMAD--RLTGVDISENMLAKAHEKGLY------D--TLYV  174 (287)
T ss_pred             hcCccHHHHHHHHHh-ccCCccceeeecccCcCcccHhHHHHHh--hccCCchhHHHHHHHHhccch------H--HHHH
Confidence            456666555444443 3334467999999999999999988866  899999999999999886311      1  2344


Q ss_pred             cCCCC-CC-CCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEeecc
Q 020988          226 ADVCR-LP-FASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFRYT  278 (319)
Q Consensus       226 ~d~~~-lp-~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~~~  278 (319)
                      +|+.. ++ ..++.||+|++..|+-++.+.+..+.-....|+++|   ++.|+..
T Consensus       175 Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gG---lfaFSvE  226 (287)
T COG4976         175 AEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGG---LFAFSVE  226 (287)
T ss_pred             HHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCc---eEEEEec
Confidence            55442 22 346899999999999999999998888878777665   5556443

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.07  E-value=2.6e-09  Score=96.62  Aligned_cols=85  Identities=21%  Similarity=0.241  Sum_probs=67.7

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (319)
                      +.+...+...++.+|||+|||+|.++..+++..+..+++|+|+|+.+++.+++++...   ...++.++.+|+... +.+
T Consensus        98 ~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~---~~~~i~~~~~d~~~~-~~~  173 (275)
T PRK09328         98 EWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHG---LGARVEFLQGDWFEP-LPG  173 (275)
T ss_pred             HHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhC---CCCcEEEEEccccCc-CCC
Confidence            3333334455678999999999999999999887779999999999999999987621   245899999998553 335


Q ss_pred             CCccEEEec
Q 020988          236 GFVDAVHAG  244 (319)
Q Consensus       236 ~~fD~V~~~  244 (319)
                      ++||+|+++
T Consensus       174 ~~fD~Iv~n  182 (275)
T PRK09328        174 GRFDLIVSN  182 (275)
T ss_pred             CceeEEEEC
Confidence            789999985

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=99.07  E-value=1.7e-09  Score=92.91  Aligned_cols=95  Identities=18%  Similarity=0.348  Sum_probs=76.1

Q ss_pred             CeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC-CC--CCCCCccEEEec
Q 020988          168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LP--FASGFVDAVHAG  244 (319)
Q Consensus       168 ~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp--~~~~~fD~V~~~  244 (319)
                      ..+||||||.|.++..+++..|+..++|+|+....+..+.+++...   ...|+.++++|+.. ++  ++++++|.|+..
T Consensus        19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~---~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~   95 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKR---GLKNVRFLRGDARELLRRLFPPGSVDRIYIN   95 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHH---TTSSEEEEES-CTTHHHHHSTTTSEEEEEEE
T ss_pred             CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhh---cccceEEEEccHHHHHhhcccCCchheEEEe
Confidence            4999999999999999999999999999999999999999988876   47899999999987 32  456899999885


Q ss_pred             ccccCCCCH-------------HHHHHHHHHhhcCCCee
Q 020988          245 AALHCWPSP-------------SNAASVFSSSYSLLSIC  270 (319)
Q Consensus       245 ~vl~h~~d~-------------~~~l~el~rvlk~g~~~  270 (319)
                           +|||             ...++++.++|++||..
T Consensus        96 -----FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l  129 (195)
T PF02390_consen   96 -----FPDPWPKKRHHKRRLVNPEFLELLARVLKPGGEL  129 (195)
T ss_dssp             -----S-----SGGGGGGSTTSHHHHHHHHHHEEEEEEE
T ss_pred             -----CCCCCcccchhhhhcCCchHHHHHHHHcCCCCEE
Confidence                 4444             36688889998887644

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PTZ00146 fibrillarin; Provisional

Probab=99.07  E-value=2.1e-09  Score=96.91  Aligned_cols=103  Identities=17%  Similarity=0.089  Sum_probs=76.7

Q ss_pred             hccCCCeEEEEcCCcChHHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC---CCCCCCc
Q 020988          163 KSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL---PFASGFV  238 (319)
Q Consensus       163 ~~~~~~~VLDiGcG~G~~~~~l~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l---p~~~~~f  238 (319)
                      ...++.+|||+|||+|.++..+++.. +...|+++|+++.+.+...+..+.     ..|+.++.+|+...   ....++|
T Consensus       129 ~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~-----r~NI~~I~~Da~~p~~y~~~~~~v  203 (293)
T PTZ00146        129 PIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK-----RPNIVPIIEDARYPQKYRMLVPMV  203 (293)
T ss_pred             ccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-----cCCCEEEECCccChhhhhcccCCC
Confidence            45688999999999999999999884 445899999999766555544332     25888999998642   2234589


Q ss_pred             cEEEecccccCCCCH-HHHHHHHHHhhcCCCeeEEE
Q 020988          239 DAVHAGAALHCWPSP-SNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       239 D~V~~~~vl~h~~d~-~~~l~el~rvlk~g~~~g~~  273 (319)
                      |+|++...   .+|. ..++.++.++||+++.+.+.
T Consensus       204 DvV~~Dva---~pdq~~il~~na~r~LKpGG~~vI~  236 (293)
T PTZ00146        204 DVIFADVA---QPDQARIVALNAQYFLKNGGHFIIS  236 (293)
T ss_pred             CEEEEeCC---CcchHHHHHHHHHHhccCCCEEEEE
Confidence            99998764   2343 35566899999999987773

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.06  E-value=3.8e-09  Score=99.67  Aligned_cols=76  Identities=17%  Similarity=0.145  Sum_probs=63.7

Q ss_pred             CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC-CCCCccEEEec
Q 020988          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-ASGFVDAVHAG  244 (319)
Q Consensus       166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-~~~~fD~V~~~  244 (319)
                      ++.+|||+|||+|.++..+++..+..+++|+|+|+.+++.|+++.+..    ..+++++++|+.+..+ .+++||+|+++
T Consensus       251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~----g~rV~fi~gDl~e~~l~~~~~FDLIVSN  326 (423)
T PRK14966        251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADL----GARVEFAHGSWFDTDMPSEGKWDIIVSN  326 (423)
T ss_pred             CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc----CCcEEEEEcchhccccccCCCccEEEEC
Confidence            457999999999999999988777779999999999999999998764    2479999999865433 24589999996


Q ss_pred             c
Q 020988          245 A  245 (319)
Q Consensus       245 ~  245 (319)
                      -
T Consensus       327 P  327 (423)
T PRK14966        327 P  327 (423)
T ss_pred             C
Confidence            5

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.02  E-value=2.6e-09  Score=96.48  Aligned_cols=110  Identities=18%  Similarity=0.208  Sum_probs=76.2

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (319)
                      .+.+.++.  .++.+|||+|||+|-++..+++.|. .+|+|+|+++.+++.+++++..++-.  ..+.....+....+ .
T Consensus       153 L~~Le~~~--~~g~~vlDvGcGSGILaIAa~kLGA-~~v~g~DiDp~AV~aa~eNa~~N~v~--~~~~~~~~~~~~~~-~  226 (300)
T COG2264         153 LEALEKLL--KKGKTVLDVGCGSGILAIAAAKLGA-KKVVGVDIDPQAVEAARENARLNGVE--LLVQAKGFLLLEVP-E  226 (300)
T ss_pred             HHHHHHhh--cCCCEEEEecCChhHHHHHHHHcCC-ceEEEecCCHHHHHHHHHHHHHcCCc--hhhhcccccchhhc-c
Confidence            44555544  3789999999999999999999985 57999999999999999998875311  11122222332222 2


Q ss_pred             CCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988          235 SGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~  273 (319)
                      .++||+|+++= |-++  ...+..++.+.+||+|...+-
T Consensus       227 ~~~~DvIVANI-LA~v--l~~La~~~~~~lkpgg~lIlS  262 (300)
T COG2264         227 NGPFDVIVANI-LAEV--LVELAPDIKRLLKPGGRLILS  262 (300)
T ss_pred             cCcccEEEehh-hHHH--HHHHHHHHHHHcCCCceEEEE
Confidence            36999999974 2221  235667788898887665444

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.02  E-value=1.6e-09  Score=100.12  Aligned_cols=110  Identities=14%  Similarity=0.214  Sum_probs=79.2

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC-
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-  233 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-  233 (319)
                      ++.+.+++...++.+|||+|||+|.++..+++.+.  +|+|+|+++.+++.|+++++..+   ..+++++++|+.++.. 
T Consensus       162 ~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~~--~V~gvD~s~~av~~A~~n~~~~~---l~~v~~~~~D~~~~~~~  236 (315)
T PRK03522        162 YATARDWVRELPPRSMWDLFCGVGGFGLHCATPGM--QLTGIEISAEAIACAKQSAAELG---LTNVQFQALDSTQFATA  236 (315)
T ss_pred             HHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHcC---CCceEEEEcCHHHHHHh
Confidence            34445555545678999999999999999998765  99999999999999999987753   3579999999977542 


Q ss_pred             CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      ..++||+|++.--      ......++.+.+...++..+++.
T Consensus       237 ~~~~~D~Vv~dPP------r~G~~~~~~~~l~~~~~~~ivyv  272 (315)
T PRK03522        237 QGEVPDLVLVNPP------RRGIGKELCDYLSQMAPRFILYS  272 (315)
T ss_pred             cCCCCeEEEECCC------CCCccHHHHHHHHHcCCCeEEEE
Confidence            2357999998632      11122334444444555556655

>PRK00811 spermidine synthase; Provisional

Probab=99.01  E-value=3.4e-09  Score=96.44  Aligned_cols=108  Identities=11%  Similarity=0.102  Sum_probs=79.5

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCcc--CCCCeEEEEcCCCCC-CCCCCCccEE
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI--LTSNLALVRADVCRL-PFASGFVDAV  241 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~--~~~~i~~~~~d~~~l-p~~~~~fD~V  241 (319)
                      ..+.+||+||||+|..+..+.+.....+|+++|+++.+++.|++.+...+..  ..++++++.+|+... ...+++||+|
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI  154 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI  154 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence            3567999999999999999988744468999999999999999988642211  256899999998653 3345789999


Q ss_pred             EecccccCCCC----HHHHHHHHHHhhcCCCeeEE
Q 020988          242 HAGAALHCWPS----PSNAASVFSSSYSLLSICYL  272 (319)
Q Consensus       242 ~~~~vl~h~~d----~~~~l~el~rvlk~g~~~g~  272 (319)
                      ++...-.+.+.    ...+++.+++.|+++|....
T Consensus       155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~  189 (283)
T PRK00811        155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVA  189 (283)
T ss_pred             EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence            98543222221    14557778888888776543

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=99.01  E-value=6.9e-10  Score=95.75  Aligned_cols=107  Identities=21%  Similarity=0.171  Sum_probs=80.6

Q ss_pred             CeEEEEcCCcChHHHHHHhhCCC--CeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC----CCCCCCCccEE
Q 020988          168 GLLVDVSCGSGLFSRKFAKSGTY--SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR----LPFASGFVDAV  241 (319)
Q Consensus       168 ~~VLDiGcG~G~~~~~l~~~g~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~----lp~~~~~fD~V  241 (319)
                      .+|||||||.|.....+.+..++  ..+++.|.|+.+++..+++....    ..++...+.|+..    -|...+++|+|
T Consensus        73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~----e~~~~afv~Dlt~~~~~~~~~~~svD~i  148 (264)
T KOG2361|consen   73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD----ESRVEAFVWDLTSPSLKEPPEEGSVDII  148 (264)
T ss_pred             hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc----hhhhcccceeccchhccCCCCcCccceE
Confidence            38999999999999999998776  78999999999999998865432    3455555556543    24667999999


Q ss_pred             EecccccCCCCHH---HHHHHHHHhhcCCCeeEEEEeeccchhc
Q 020988          242 HAGAALHCWPSPS---NAASVFSSSYSLLSICYLLQFRYTKIIE  282 (319)
Q Consensus       242 ~~~~vl~h~~d~~---~~l~el~rvlk~g~~~g~~~~~~~~~~~  282 (319)
                      ++.+||..++ |+   .++..+.+++||   +|.++|.+|+..+
T Consensus       149 t~IFvLSAi~-pek~~~a~~nl~~llKP---GG~llfrDYg~~D  188 (264)
T KOG2361|consen  149 TLIFVLSAIH-PEKMQSVIKNLRTLLKP---GGSLLFRDYGRYD  188 (264)
T ss_pred             EEEEEEeccC-hHHHHHHHHHHHHHhCC---CcEEEEeecccch
Confidence            9999999884 44   456666666665   5577776665543

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.00  E-value=5.7e-09  Score=100.37  Aligned_cols=114  Identities=15%  Similarity=0.118  Sum_probs=84.2

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC
Q 020988          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (319)
Q Consensus       154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (319)
                      ....+...+...++.+|||+|||+|..+..+++.. ...+|+++|+++.+++.++++++..+   ..++.++.+|+..++
T Consensus       225 ~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g---~~~v~~~~~Da~~l~  301 (431)
T PRK14903        225 SSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLK---LSSIEIKIADAERLT  301 (431)
T ss_pred             HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC---CCeEEEEECchhhhh
Confidence            34455556677788999999999999998888763 34699999999999999999998763   346889999998776


Q ss_pred             -CCCCCccEEEec------ccccCCCCH----------------HHHHHHHHHhhcCCCee
Q 020988          233 -FASGFVDAVHAG------AALHCWPSP----------------SNAASVFSSSYSLLSIC  270 (319)
Q Consensus       233 -~~~~~fD~V~~~------~vl~h~~d~----------------~~~l~el~rvlk~g~~~  270 (319)
                       +.+++||.|++.      +++.+-++.                .+.+.++.+++||||..
T Consensus       302 ~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~L  362 (431)
T PRK14903        302 EYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGIL  362 (431)
T ss_pred             hhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEE
Confidence             446789999962      233332221                23466666777777654

>PRK04457 spermidine synthase; Provisional

Probab=99.00  E-value=4.1e-09  Score=94.82  Aligned_cols=109  Identities=7%  Similarity=0.066  Sum_probs=81.8

Q ss_pred             ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-CCCCCCccEEE
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PFASGFVDAVH  242 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~~~~~fD~V~  242 (319)
                      ..++.+|||||||+|.++..+++..+..+++++|+++.+++.|++++...+  ..++++++.+|+.+. +-..++||+|+
T Consensus        64 ~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~--~~~rv~v~~~Da~~~l~~~~~~yD~I~  141 (262)
T PRK04457         64 NPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPE--NGERFEVIEADGAEYIAVHRHSTDVIL  141 (262)
T ss_pred             CCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCC--CCCceEEEECCHHHHHHhCCCCCCEEE
Confidence            345679999999999999999988888899999999999999999875421  236899999998552 22236899999


Q ss_pred             eccccc--CCC---CHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          243 AGAALH--CWP---SPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       243 ~~~vl~--h~~---d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      +.. +.  ..+   ....+++++.++|+|+|.+.+-.+
T Consensus       142 ~D~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~  178 (262)
T PRK04457        142 VDG-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLW  178 (262)
T ss_pred             EeC-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcC
Confidence            742 21  111   125778889999998887665433

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=98.99  E-value=5.1e-09  Score=94.39  Aligned_cols=83  Identities=16%  Similarity=0.094  Sum_probs=67.8

Q ss_pred             HHHHhhccCCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCC
Q 020988          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (319)
Q Consensus       158 l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~  236 (319)
                      ....+...++.+|||+|||+|..+..+++... ...|+++|+++.+++.++++++..+   ..++.++..|...++...+
T Consensus        63 ~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g---~~~v~~~~~D~~~~~~~~~  139 (264)
T TIGR00446        63 PPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCG---VLNVAVTNFDGRVFGAAVP  139 (264)
T ss_pred             HHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC---CCcEEEecCCHHHhhhhcc
Confidence            33455667889999999999999998887642 3589999999999999999998763   3578999999887665556


Q ss_pred             CccEEEe
Q 020988          237 FVDAVHA  243 (319)
Q Consensus       237 ~fD~V~~  243 (319)
                      .||+|++
T Consensus       140 ~fD~Vl~  146 (264)
T TIGR00446       140 KFDAILL  146 (264)
T ss_pred             CCCEEEE
Confidence            7999996

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=98.99  E-value=1.2e-08  Score=91.24  Aligned_cols=73  Identities=23%  Similarity=0.267  Sum_probs=59.4

Q ss_pred             CCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-CC-CCCCccEEEec
Q 020988          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PF-ASGFVDAVHAG  244 (319)
Q Consensus       167 ~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~-~~~~fD~V~~~  244 (319)
                      +.+|||+|||+|.++..+++..+..+++|+|+|+.+++.|+++++..      +++++++|+.+. +- ..++||+|+++
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~------~~~~~~~D~~~~l~~~~~~~fDlVv~N  160 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA------GGTVHEGDLYDALPTALRGRVDILAAN  160 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc------CCEEEEeechhhcchhcCCCEeEEEEC
Confidence            45899999999999999988766668999999999999999998763      357889998653 21 13579999987


Q ss_pred             c
Q 020988          245 A  245 (319)
Q Consensus       245 ~  245 (319)
                      -
T Consensus       161 P  161 (251)
T TIGR03704       161 A  161 (251)
T ss_pred             C
Confidence            4

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.98  E-value=9.9e-09  Score=100.56  Aligned_cols=76  Identities=12%  Similarity=0.131  Sum_probs=62.5

Q ss_pred             CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (319)
Q Consensus       166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (319)
                      ++.+|||+|||+|.++..+++..+..+|+++|+|+.+++.|++++...+  ...++.++.+|+.+ ++.+++||+|+++
T Consensus       138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~--l~~~v~~~~~D~~~-~~~~~~fDlIvsN  213 (506)
T PRK01544        138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYE--VTDRIQIIHSNWFE-NIEKQKFDFIVSN  213 (506)
T ss_pred             CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcC--Cccceeeeecchhh-hCcCCCccEEEEC
Confidence            3468999999999999999887777799999999999999999987642  23478999999754 2335689999995

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=98.97  E-value=6.9e-09  Score=100.43  Aligned_cols=112  Identities=18%  Similarity=0.149  Sum_probs=83.2

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-  232 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-  232 (319)
                      ...+...+...++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.++++++..+   ..++.++.+|+..++ 
T Consensus       239 s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g---~~~v~~~~~D~~~~~~  315 (444)
T PRK14902        239 SMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLG---LTNIETKALDARKVHE  315 (444)
T ss_pred             HHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCeEEEEeCCcccccc
Confidence            3455556666788999999999999999988863 45699999999999999999987753   346899999998763 


Q ss_pred             -CCCCCccEEEecc------cccCCCCH----------------HHHHHHHHHhhcCCCee
Q 020988          233 -FASGFVDAVHAGA------ALHCWPSP----------------SNAASVFSSSYSLLSIC  270 (319)
Q Consensus       233 -~~~~~fD~V~~~~------vl~h~~d~----------------~~~l~el~rvlk~g~~~  270 (319)
                       +. ++||+|++..      ++.+-++.                ...++++.+++||||..
T Consensus       316 ~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~l  375 (444)
T PRK14902        316 KFA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGIL  375 (444)
T ss_pred             hhc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEE
Confidence             33 6899999742      23332221                23566677777777654

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=98.97  E-value=1e-08  Score=90.84  Aligned_cols=116  Identities=18%  Similarity=0.249  Sum_probs=92.1

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC
Q 020988          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (319)
Q Consensus       154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (319)
                      ....+...+...||.+|||.|.|+|.++..+++. ++..+|+..|+.++..+.|+++++..+  ...++++...|+.+..
T Consensus        28 D~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~g--l~~~v~~~~~Dv~~~g  105 (247)
T PF08704_consen   28 DISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHG--LDDNVTVHHRDVCEEG  105 (247)
T ss_dssp             HHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT--CCTTEEEEES-GGCG-
T ss_pred             hHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcC--CCCCceeEecceeccc
Confidence            3456777788899999999999999999999976 677899999999999999999998864  4568999999996544


Q ss_pred             CC---CCCccEEEecccccCCCCHHHHHHHHHHhh-cCCCeeEEEEee
Q 020988          233 FA---SGFVDAVHAGAALHCWPSPSNAASVFSSSY-SLLSICYLLQFR  276 (319)
Q Consensus       233 ~~---~~~fD~V~~~~vl~h~~d~~~~l~el~rvl-k~g~~~g~~~~~  276 (319)
                      +.   +..+|.|+.     -+|+|..++..+.++| |+||....+...
T Consensus       106 ~~~~~~~~~DavfL-----Dlp~Pw~~i~~~~~~L~~~gG~i~~fsP~  148 (247)
T PF08704_consen  106 FDEELESDFDAVFL-----DLPDPWEAIPHAKRALKKPGGRICCFSPC  148 (247)
T ss_dssp             -STT-TTSEEEEEE-----ESSSGGGGHHHHHHHE-EEEEEEEEEESS
T ss_pred             ccccccCcccEEEE-----eCCCHHHHHHHHHHHHhcCCceEEEECCC
Confidence            42   367999977     4899999999999999 899888888773

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.96  E-value=9.3e-09  Score=91.40  Aligned_cols=97  Identities=20%  Similarity=0.252  Sum_probs=75.4

Q ss_pred             HHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCC
Q 020988          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF  237 (319)
Q Consensus       158 l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~  237 (319)
                      +.......+..+|||||+|+|.++..+++..|+.+++.+|+ |.+++.+++         ..+++++.+|+. -+++.  
T Consensus        92 ~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~---------~~rv~~~~gd~f-~~~P~--  158 (241)
T PF00891_consen   92 LLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE---------ADRVEFVPGDFF-DPLPV--  158 (241)
T ss_dssp             HHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH---------TTTEEEEES-TT-TCCSS--
T ss_pred             hhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc---------ccccccccccHH-hhhcc--
Confidence            33444445667999999999999999999999999999999 888888887         259999999998 56664  


Q ss_pred             ccEEEecccccCCCCHH--HHHHHHHHhhcCC
Q 020988          238 VDAVHAGAALHCWPSPS--NAASVFSSSYSLL  267 (319)
Q Consensus       238 fD~V~~~~vl~h~~d~~--~~l~el~rvlk~g  267 (319)
                      +|+|++.++||+++|.+  ..|+.+++.++|+
T Consensus       159 ~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg  190 (241)
T PF00891_consen  159 ADVYLLRHVLHDWSDEDCVKILRNAAAALKPG  190 (241)
T ss_dssp             ESEEEEESSGGGS-HHHHHHHHHHHHHHSEEC
T ss_pred             ccceeeehhhhhcchHHHHHHHHHHHHHhCCC
Confidence            99999999999997643  4456666666666

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.96  E-value=4.1e-09  Score=95.44  Aligned_cols=84  Identities=12%  Similarity=0.188  Sum_probs=68.7

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (319)
Q Consensus       154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (319)
                      ..+.+.+.+...++.+|||||||+|.++..+++.++  +|+|+|+++.+++.+++++..      .+++++.+|+.++++
T Consensus        30 i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~------~~v~~i~~D~~~~~~  101 (272)
T PRK00274         30 ILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAE------DNLTIIEGDALKVDL  101 (272)
T ss_pred             HHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhcc------CceEEEEChhhcCCH
Confidence            345566666667888999999999999999999976  999999999999999987632      589999999999876


Q ss_pred             CCCCccEEEecc
Q 020988          234 ASGFVDAVHAGA  245 (319)
Q Consensus       234 ~~~~fD~V~~~~  245 (319)
                      .+-.+|.|+++-
T Consensus       102 ~~~~~~~vv~Nl  113 (272)
T PRK00274        102 SELQPLKVVANL  113 (272)
T ss_pred             HHcCcceEEEeC
Confidence            542257777764

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=98.95  E-value=1.4e-08  Score=98.21  Aligned_cols=84  Identities=14%  Similarity=0.123  Sum_probs=67.8

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (319)
                      ......+...++.+|||+|||+|..+..+++.. ...+|+++|+|+.+++.++++++..+   ..+++++.+|+..++ +
T Consensus       240 ~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g---~~~v~~~~~Da~~~~-~  315 (445)
T PRK14904        240 ALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALG---ITIIETIEGDARSFS-P  315 (445)
T ss_pred             HHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhC---CCeEEEEeCcccccc-c
Confidence            344455666788999999999999988887653 23489999999999999999998763   347899999998875 4


Q ss_pred             CCCccEEEe
Q 020988          235 SGFVDAVHA  243 (319)
Q Consensus       235 ~~~fD~V~~  243 (319)
                      +++||+|++
T Consensus       316 ~~~fD~Vl~  324 (445)
T PRK14904        316 EEQPDAILL  324 (445)
T ss_pred             CCCCCEEEE
Confidence            578999996

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=98.95  E-value=6.4e-09  Score=100.59  Aligned_cols=85  Identities=24%  Similarity=0.400  Sum_probs=69.4

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC----
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR----  230 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~----  230 (319)
                      .+.+.+++...++.+|||+|||+|.++..+++.+.  +|+|+|+|+.+++.|+++++..+   ..+++++.+|+.+    
T Consensus       286 ~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~--~V~gvD~s~~al~~A~~n~~~~~---~~~v~~~~~d~~~~l~~  360 (443)
T PRK13168        286 VARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAA--EVVGVEGVEAMVERARENARRNG---LDNVTFYHANLEEDFTD  360 (443)
T ss_pred             HHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHHcC---CCceEEEEeChHHhhhh
Confidence            45555666666788999999999999999998865  99999999999999999987653   3579999999864    


Q ss_pred             CCCCCCCccEEEec
Q 020988          231 LPFASGFVDAVHAG  244 (319)
Q Consensus       231 lp~~~~~fD~V~~~  244 (319)
                      +++.+++||+|++.
T Consensus       361 ~~~~~~~fD~Vi~d  374 (443)
T PRK13168        361 QPWALGGFDKVLLD  374 (443)
T ss_pred             hhhhcCCCCEEEEC
Confidence            23445789999884

>PHA03412 putative methyltransferase; Provisional

Probab=98.94  E-value=8.5e-09  Score=90.09  Aligned_cols=92  Identities=14%  Similarity=0.178  Sum_probs=70.8

Q ss_pred             CCCCCcHHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhC---CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeE
Q 020988          146 SGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG---TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLA  222 (319)
Q Consensus       146 ~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~  222 (319)
                      ..|+.|....+.+...  ...+.+|||+|||+|.++..+++..   +..+|+++|+++.+++.|+++.        .++.
T Consensus        31 GqFfTP~~iAr~~~i~--~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~--------~~~~  100 (241)
T PHA03412         31 GAFFTPIGLARDFTID--ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV--------PEAT  100 (241)
T ss_pred             CccCCCHHHHHHHHHh--ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc--------cCCE
Confidence            4577777775554322  2347899999999999999888752   2458999999999999999864        3678


Q ss_pred             EEEcCCCCCCCCCCCccEEEeccccc
Q 020988          223 LVRADVCRLPFASGFVDAVHAGAALH  248 (319)
Q Consensus       223 ~~~~d~~~lp~~~~~fD~V~~~~vl~  248 (319)
                      ++.+|+...++ +++||+|+++--+.
T Consensus       101 ~~~~D~~~~~~-~~~FDlIIsNPPY~  125 (241)
T PHA03412        101 WINADALTTEF-DTLFDMAISNPPFG  125 (241)
T ss_pred             EEEcchhcccc-cCCccEEEECCCCC
Confidence            99999987665 46899999975333

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.93  E-value=1.8e-08  Score=93.37  Aligned_cols=116  Identities=23%  Similarity=0.186  Sum_probs=75.0

Q ss_pred             CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCc-------cCCCCeEEEEcCCCCC------C
Q 020988          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT-------ILTSNLALVRADVCRL------P  232 (319)
Q Consensus       166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~-------~~~~~i~~~~~d~~~l------p  232 (319)
                      ++.+|||+|||-|.-+.-....+ ...++|+|++...++.|++|.++.+.       ...-...++.+|....      +
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~  140 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP  140 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred             CCCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence            68899999999988776666654 36899999999999999999933110       0112456788887542      2


Q ss_pred             CCCCCccEEEecccccCCCCHHHHHH-HHHHhhcCCCeeEEEEeeccchhc
Q 020988          233 FASGFVDAVHAGAALHCWPSPSNAAS-VFSSSYSLLSICYLLQFRYTKIIE  282 (319)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~-el~rvlk~g~~~g~~~~~~~~~~~  282 (319)
                      .....||+|.|.++||+.-..+...+ -+..+.+.++++|.++.+......
T Consensus       141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~  191 (331)
T PF03291_consen  141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDE  191 (331)
T ss_dssp             STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHH
T ss_pred             ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHH
Confidence            22359999999999999765543333 344466666667777665444443

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.92  E-value=1.5e-08  Score=84.66  Aligned_cols=75  Identities=25%  Similarity=0.372  Sum_probs=64.8

Q ss_pred             hccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEE
Q 020988          163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH  242 (319)
Q Consensus       163 ~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~  242 (319)
                      ..-.+.+|+|+|||||.++..++-.|+ ..|+|+|+++++++.++++.++    ...++.++.+|+.+..   ..+|+|+
T Consensus        42 g~l~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~----l~g~v~f~~~dv~~~~---~~~dtvi  113 (198)
T COG2263          42 GDLEGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEE----LLGDVEFVVADVSDFR---GKFDTVI  113 (198)
T ss_pred             CCcCCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHh----hCCceEEEEcchhhcC---CccceEE
Confidence            345678899999999999999988885 6899999999999999999877    3678999999999874   6788998


Q ss_pred             ecc
Q 020988          243 AGA  245 (319)
Q Consensus       243 ~~~  245 (319)
                      ++-
T Consensus       114 mNP  116 (198)
T COG2263         114 MNP  116 (198)
T ss_pred             ECC
Confidence            864

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.91  E-value=1e-08  Score=92.07  Aligned_cols=84  Identities=15%  Similarity=0.279  Sum_probs=69.6

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (319)
                      .+.+.+.+...++.+|||||||+|.++..+++.+.  +++|+|+++.+++.+++++..     ..+++++.+|+.+++++
T Consensus        18 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~--~v~~vEid~~~~~~l~~~~~~-----~~~v~ii~~D~~~~~~~   90 (258)
T PRK14896         18 VDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAK--KVYAIELDPRLAEFLRDDEIA-----AGNVEIIEGDALKVDLP   90 (258)
T ss_pred             HHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHhcc-----CCCEEEEEeccccCCch
Confidence            34555566666789999999999999999999865  899999999999999988743     35899999999988765


Q ss_pred             CCCccEEEecccc
Q 020988          235 SGFVDAVHAGAAL  247 (319)
Q Consensus       235 ~~~fD~V~~~~vl  247 (319)
                        .||.|+++--.
T Consensus        91 --~~d~Vv~NlPy  101 (258)
T PRK14896         91 --EFNKVVSNLPY  101 (258)
T ss_pred             --hceEEEEcCCc
Confidence              48999887553

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=98.90  E-value=8e-09  Score=93.95  Aligned_cols=99  Identities=22%  Similarity=0.241  Sum_probs=67.6

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (319)
                      .++.+|||+|||+|-++..+++.|. .+|+|+|+++.+++.|++++..++  ...++.+  ....+.  ..++||+|+++
T Consensus       160 ~~g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~--~~~~~~v--~~~~~~--~~~~~dlvvAN  232 (295)
T PF06325_consen  160 KPGKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNG--VEDRIEV--SLSEDL--VEGKFDLVVAN  232 (295)
T ss_dssp             STTSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT---TTCEEE--SCTSCT--CCS-EEEEEEE
T ss_pred             cCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcC--CCeeEEE--EEeccc--ccccCCEEEEC
Confidence            5678999999999999999999885 589999999999999999998764  2234433  222222  34899999986


Q ss_pred             ccccCCCCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988          245 AALHCWPSPSNAASVFSSSYSLLSICYLLQFR  276 (319)
Q Consensus       245 ~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~  276 (319)
                      -..+-   .......+.++++++   |.++++
T Consensus       233 I~~~v---L~~l~~~~~~~l~~~---G~lIlS  258 (295)
T PF06325_consen  233 ILADV---LLELAPDIASLLKPG---GYLILS  258 (295)
T ss_dssp             S-HHH---HHHHHHHCHHHEEEE---EEEEEE
T ss_pred             CCHHH---HHHHHHHHHHhhCCC---CEEEEc
Confidence            43221   123445566666665   455553

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.88  E-value=1.7e-08  Score=88.46  Aligned_cols=110  Identities=13%  Similarity=0.178  Sum_probs=84.2

Q ss_pred             HHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-C--CCC
Q 020988          159 QEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P--FAS  235 (319)
Q Consensus       159 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p--~~~  235 (319)
                      .+.+.......+||||||.|.++..+++..|...++|||+....+..|.+++.+.+   ..|+.+++.|+..+ +  +++
T Consensus        41 ~~~f~~~~~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~---l~Nlri~~~DA~~~l~~~~~~  117 (227)
T COG0220          41 SALFGNNNAPIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELG---LKNLRLLCGDAVEVLDYLIPD  117 (227)
T ss_pred             HHHhCCCCCcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcC---CCcEEEEcCCHHHHHHhcCCC
Confidence            34444444468999999999999999999999999999999999999999998863   33999999999764 1  345


Q ss_pred             CCccEEEecccccCCCCH--------HHHHHHHHHhhcCCCeeE
Q 020988          236 GFVDAVHAGAALHCWPSP--------SNAASVFSSSYSLLSICY  271 (319)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~--------~~~l~el~rvlk~g~~~g  271 (319)
                      ++.|-|+.++.=-|....        ...++.+.++|+++|.+.
T Consensus       118 ~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~  161 (227)
T COG0220         118 GSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLH  161 (227)
T ss_pred             CCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEE
Confidence            699999986422211111        356888899988886544

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=98.88  E-value=3.7e-08  Score=87.16  Aligned_cols=112  Identities=13%  Similarity=0.092  Sum_probs=82.3

Q ss_pred             HHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC
Q 020988          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (319)
Q Consensus       153 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (319)
                      ...+.+..+....++.+|||||||+|.-+..++.. ....+++++|+++++++.|+++++..+  ...+++++.+|+.+.
T Consensus        55 ~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~g--l~~~i~~~~gda~~~  132 (234)
T PLN02781         55 DEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAG--VDHKINFIQSDALSA  132 (234)
T ss_pred             HHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEccHHHH
Confidence            33455555556667899999999999988777765 335699999999999999999998864  346799999998663


Q ss_pred             -C-----CCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCe
Q 020988          232 -P-----FASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSI  269 (319)
Q Consensus       232 -p-----~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~  269 (319)
                       +     ..+++||+|++...=   +.....+.++.++++|||.
T Consensus       133 L~~l~~~~~~~~fD~VfiDa~k---~~y~~~~~~~~~ll~~GG~  173 (234)
T PLN02781        133 LDQLLNNDPKPEFDFAFVDADK---PNYVHFHEQLLKLVKVGGI  173 (234)
T ss_pred             HHHHHhCCCCCCCCEEEECCCH---HHHHHHHHHHHHhcCCCeE
Confidence             2     124689999885321   2234567777777777754

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.87  E-value=3.8e-08  Score=88.22  Aligned_cols=109  Identities=10%  Similarity=0.134  Sum_probs=78.7

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (319)
                      .+.+.+.+...++.+|||||||+|.++..+++.++  .++++|+++.+++.+++++..     ..+++++.+|+.++++.
T Consensus        18 ~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~-----~~~v~v~~~D~~~~~~~   90 (253)
T TIGR00755        18 IQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSL-----YERLEVIEGDALKVDLP   90 (253)
T ss_pred             HHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCc-----CCcEEEEECchhcCChh
Confidence            34555556666789999999999999999999986  799999999999999987642     35899999999988865


Q ss_pred             CCCcc---EEEecccccCCCCHHHHHHHHHHhh-cCCCeeEEEEeecc
Q 020988          235 SGFVD---AVHAGAALHCWPSPSNAASVFSSSY-SLLSICYLLQFRYT  278 (319)
Q Consensus       235 ~~~fD---~V~~~~vl~h~~d~~~~l~el~rvl-k~g~~~g~~~~~~~  278 (319)
                        .+|   +|+++-. .|+     ....+.+++ .++....++++...
T Consensus        91 --~~d~~~~vvsNlP-y~i-----~~~il~~ll~~~~~~~~~~~~q~e  130 (253)
T TIGR00755        91 --DFPKQLKVVSNLP-YNI-----SSPLIFKLLEKPKFRLAVLMVQKE  130 (253)
T ss_pred             --HcCCcceEEEcCC-hhh-----HHHHHHHHhccCCCceEEEEehHH
Confidence              466   5655433 333     123344444 55555566666444

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.84  E-value=1.6e-08  Score=86.07  Aligned_cols=129  Identities=16%  Similarity=0.259  Sum_probs=76.8

Q ss_pred             hhhhhhhcCch-hhHHhHHhHHHhhhhCCCCCcHHHHHHHHHHhhccC-CCeEEEEcCCcChHHHHHHhhCCCCeEEEEe
Q 020988          120 PASTELFRSPF-VSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQ-GGLLVDVSCGSGLFSRKFAKSGTYSGVVALD  197 (319)
Q Consensus       120 ~~~~~~~~~~~-~s~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD  197 (319)
                      ..+.++|.++. .-..|+.++++....  +|.  .-.+.+.+++...+ ...|-|+|||.+.++..+.+ ..  .|...|
T Consensus        28 ~~A~~lf~~dP~~F~~YH~Gfr~Qv~~--WP~--nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~-~~--~V~SfD  100 (219)
T PF05148_consen   28 EEALKLFQEDPELFDIYHEGFRQQVKK--WPV--NPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPN-KH--KVHSFD  100 (219)
T ss_dssp             HHHHHHHHH-HHHHHHHHHHHHHHHCT--SSS---HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S------EEEEE
T ss_pred             HHHHHHHHhCHHHHHHHHHHHHHHHhc--CCC--CcHHHHHHHHHhcCCCEEEEECCCchHHHHHhccc-Cc--eEEEee
Confidence            34455555433 333566776665442  322  23456666665444 56899999999999866542 23  799999


Q ss_pred             CCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEE
Q 020988          198 FSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQ  274 (319)
Q Consensus       198 ~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~  274 (319)
                      +-..                  +-.+..+|+..+|++++++|+++.+.+|-.. |....++|..|+||++|.+-+.-
T Consensus       101 Lva~------------------n~~Vtacdia~vPL~~~svDv~VfcLSLMGT-n~~~fi~EA~RvLK~~G~L~IAE  158 (219)
T PF05148_consen  101 LVAP------------------NPRVTACDIANVPLEDESVDVAVFCLSLMGT-NWPDFIREANRVLKPGGILKIAE  158 (219)
T ss_dssp             SS-S------------------STTEEES-TTS-S--TT-EEEEEEES---SS--HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccCC------------------CCCEEEecCccCcCCCCceeEEEEEhhhhCC-CcHHHHHHHHheeccCcEEEEEE
Confidence            8542                  3347789999999999999999999988876 88899999999999887655443

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=98.84  E-value=1.4e-07  Score=81.36  Aligned_cols=118  Identities=10%  Similarity=0.092  Sum_probs=78.5

Q ss_pred             HHHHHHhhc-cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-CC
Q 020988          156 KMAQEYFKS-AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PF  233 (319)
Q Consensus       156 ~~l~~~l~~-~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~  233 (319)
                      +.+...+.. .++.+|||+|||+|.++..++..+. .+|+++|.++.+++.++++++..+   ..++.++.+|+.+. +.
T Consensus        42 e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~---~~~v~~~~~D~~~~l~~  117 (199)
T PRK10909         42 ETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLK---AGNARVVNTNALSFLAQ  117 (199)
T ss_pred             HHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhC---CCcEEEEEchHHHHHhh
Confidence            344444432 4578999999999999987655553 599999999999999999987753   34789999998652 22


Q ss_pred             CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEeeccc
Q 020988          234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFRYTK  279 (319)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~~~~  279 (319)
                      ..++||+|++.--... .-...+++.+.. ...+.+.++++.+...
T Consensus       118 ~~~~fDlV~~DPPy~~-g~~~~~l~~l~~-~~~l~~~~iv~ve~~~  161 (199)
T PRK10909        118 PGTPHNVVFVDPPFRK-GLLEETINLLED-NGWLADEALIYVESEV  161 (199)
T ss_pred             cCCCceEEEECCCCCC-ChHHHHHHHHHH-CCCcCCCcEEEEEecC
Confidence            2457999998755321 112233333322 1223566777775443

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=98.82  E-value=5e-08  Score=85.08  Aligned_cols=133  Identities=17%  Similarity=0.284  Sum_probs=92.1

Q ss_pred             cCCCchhhhhhhcCchhh-HHhHHhHHHhhhhCCCCCcHHHHHHHHHHhhc-cCCCeEEEEcCCcChHHHHHHhhCCCCe
Q 020988          115 YTEVKPASTELFRSPFVS-FLYERGWRQNFNRSGFPGPDEEFKMAQEYFKS-AQGGLLVDVSCGSGLFSRKFAKSGTYSG  192 (319)
Q Consensus       115 y~~~~~~~~~~~~~~~~s-~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~VLDiGcG~G~~~~~l~~~g~~~~  192 (319)
                      |......+..+|..+... ..|+.+++.....  +|.  .-.+.+.+.+.. .....|-|+|||.+.++.   ..  ...
T Consensus       131 Yt~~s~~A~~lfkedp~afdlYH~gfr~QV~k--WP~--nPld~ii~~ik~r~~~~vIaD~GCGEakiA~---~~--~~k  201 (325)
T KOG3045|consen  131 YTGTSSEAFDLFKEDPTAFDLYHAGFRSQVKK--WPE--NPLDVIIRKIKRRPKNIVIADFGCGEAKIAS---SE--RHK  201 (325)
T ss_pred             ccCCcHHHHHHHhcCcHHHHHHHHHHHHHHHh--CCC--ChHHHHHHHHHhCcCceEEEecccchhhhhh---cc--ccc
Confidence            444434445566543322 3466666655433  221  123444444443 456789999999998865   22  237


Q ss_pred             EEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEE
Q 020988          193 VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYL  272 (319)
Q Consensus       193 v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~  272 (319)
                      |+.+|+-.                  .+-+++.+|+.++|+++++.|+++.+.+|--. |....++|+.|+|++||..++
T Consensus       202 V~SfDL~a------------------~~~~V~~cDm~~vPl~d~svDvaV~CLSLMgt-n~~df~kEa~RiLk~gG~l~I  262 (325)
T KOG3045|consen  202 VHSFDLVA------------------VNERVIACDMRNVPLEDESVDVAVFCLSLMGT-NLADFIKEANRILKPGGLLYI  262 (325)
T ss_pred             eeeeeeec------------------CCCceeeccccCCcCccCcccEEEeeHhhhcc-cHHHHHHHHHHHhccCceEEE
Confidence            99999843                  35568899999999999999999999888755 889999999999999998887


Q ss_pred             EEe
Q 020988          273 LQF  275 (319)
Q Consensus       273 ~~~  275 (319)
                      --.
T Consensus       263 AEv  265 (325)
T KOG3045|consen  263 AEV  265 (325)
T ss_pred             Eeh
Confidence            655

>PRK04148 hypothetical protein; Provisional

Probab=98.81  E-value=8.5e-08  Score=76.68  Aligned_cols=97  Identities=12%  Similarity=0.220  Sum_probs=70.3

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcCh-HHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~-~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (319)
                      +.+.+.+...++.++||||||+|. ++..+.+.|.  .|+++|+++..++.++++          .++++++|+.+.++.
T Consensus         6 ~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~--~ViaIDi~~~aV~~a~~~----------~~~~v~dDlf~p~~~   73 (134)
T PRK04148          6 EFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGF--DVIVIDINEKAVEKAKKL----------GLNAFVDDLFNPNLE   73 (134)
T ss_pred             HHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCC--EEEEEECCHHHHHHHHHh----------CCeEEECcCCCCCHH
Confidence            344455555567899999999996 8888888877  999999999999888775          567899999886543


Q ss_pred             -CCCccEEEecccccCCCCHHHHHHHHHHhhcCCCee
Q 020988          235 -SGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSIC  270 (319)
Q Consensus       235 -~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~  270 (319)
                       -+.+|+|++..      -|.+...-+.++.+..+..
T Consensus        74 ~y~~a~liysir------pp~el~~~~~~la~~~~~~  104 (134)
T PRK04148         74 IYKNAKLIYSIR------PPRDLQPFILELAKKINVP  104 (134)
T ss_pred             HHhcCCEEEEeC------CCHHHHHHHHHHHHHcCCC
Confidence             36789998842      3334444455555544433

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.81  E-value=3.3e-08  Score=90.24  Aligned_cols=85  Identities=16%  Similarity=0.297  Sum_probs=69.2

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (319)
                      .+.+.+.+...++.+|||||||+|.++..+++.+.  +|+++|+++.+++.+++++...+  ...+++++.+|+.+.++ 
T Consensus        25 ~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~--~V~avEiD~~li~~l~~~~~~~~--~~~~v~ii~~Dal~~~~-   99 (294)
T PTZ00338         25 LDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAK--KVIAIEIDPRMVAELKKRFQNSP--LASKLEVIEGDALKTEF-   99 (294)
T ss_pred             HHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCC--cEEEEECCHHHHHHHHHHHHhcC--CCCcEEEEECCHhhhcc-
Confidence            34555556667889999999999999999998865  89999999999999999886532  13689999999988765 


Q ss_pred             CCCccEEEecc
Q 020988          235 SGFVDAVHAGA  245 (319)
Q Consensus       235 ~~~fD~V~~~~  245 (319)
                       ..||.|+++-
T Consensus       100 -~~~d~VvaNl  109 (294)
T PTZ00338        100 -PYFDVCVANV  109 (294)
T ss_pred             -cccCEEEecC
Confidence             3689888753

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.80  E-value=1.6e-08  Score=91.14  Aligned_cols=148  Identities=17%  Similarity=0.220  Sum_probs=97.8

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (319)
                      -.+..|||||||+|.++..+++.|. .+|++++.|+ |.++|++.++.++  ...+|.++.|.+++..++ ++.|+|++-
T Consensus       176 F~~kiVlDVGaGSGILS~FAaqAGA-~~vYAvEAS~-MAqyA~~Lv~~N~--~~~rItVI~GKiEdieLP-Ek~DviISE  250 (517)
T KOG1500|consen  176 FQDKIVLDVGAGSGILSFFAAQAGA-KKVYAVEASE-MAQYARKLVASNN--LADRITVIPGKIEDIELP-EKVDVIISE  250 (517)
T ss_pred             cCCcEEEEecCCccHHHHHHHHhCc-ceEEEEehhH-HHHHHHHHHhcCC--ccceEEEccCccccccCc-hhccEEEec
Confidence            4678999999999999998888874 6899999864 9999999887763  678999999999998876 689999985


Q ss_pred             ccccCCCCHHHHHHHHHHhhcCCCeeEEEEeeccc-----------hhc-ccCCccccccccccccCCCCCC-cceEEEE
Q 020988          245 AALHCWPSPSNAASVFSSSYSLLSICYLLQFRYTK-----------IIE-LDNDNLILHPRRGQVNNSGQEP-GTAVFFE  311 (319)
Q Consensus       245 ~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~~~~-----------~~~-~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~  311 (319)
                      -.-.-+-+ ++.++...-..|.++|.|.+..+...           +.+ ....+.|+......++-...+. +..-+|+
T Consensus       251 PMG~mL~N-ERMLEsYl~Ark~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~nkAnFWyQq~fyGVdLt~L~g~a~~eYFr  329 (517)
T KOG1500|consen  251 PMGYMLVN-ERMLESYLHARKWLKPNGKMFPTVGDIHLAPFSDEQLYVEQFNKANFWYQQNFYGVDLTPLYGSAHQEYFR  329 (517)
T ss_pred             cchhhhhh-HHHHHHHHHHHhhcCCCCcccCcccceeecccchHHHHHHHHhhhhhhhhhccccccchhhhhhhhhhhhc
Confidence            43222323 34444333333455555555442111           111 2233445555555555443332 2233899


Q ss_pred             eeeeccC
Q 020988          312 RVVLETY  318 (319)
Q Consensus       312 ~~~~~~~  318 (319)
                      ++|+|||
T Consensus       330 QPvVDtF  336 (517)
T KOG1500|consen  330 QPVVDTF  336 (517)
T ss_pred             ccccccc
Confidence            9999987

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.80  E-value=4.1e-08  Score=86.34  Aligned_cols=92  Identities=13%  Similarity=0.043  Sum_probs=74.9

Q ss_pred             CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecc
Q 020988          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (319)
Q Consensus       166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (319)
                      ...++||||+|.|..+..++....  +|+++|.|+.|....+++          +++++..  .+..-.+.+||+|.|.+
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~--~v~aTE~S~~Mr~rL~~k----------g~~vl~~--~~w~~~~~~fDvIscLN  159 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFK--EVYATEASPPMRWRLSKK----------GFTVLDI--DDWQQTDFKFDVISCLN  159 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcc--eEEeecCCHHHHHHHHhC----------CCeEEeh--hhhhccCCceEEEeehh
Confidence            457899999999999999988766  999999999997766653          4444433  33333356899999999


Q ss_pred             cccCCCCHHHHHHHHHHhhcCCCeeE
Q 020988          246 ALHCWPSPSNAASVFSSSYSLLSICY  271 (319)
Q Consensus       246 vl~h~~d~~~~l~el~rvlk~g~~~g  271 (319)
                      +|..-.+|...+++|++.++|.|..-
T Consensus       160 vLDRc~~P~~LL~~i~~~l~p~G~li  185 (265)
T PF05219_consen  160 VLDRCDRPLTLLRDIRRALKPNGRLI  185 (265)
T ss_pred             hhhccCCHHHHHHHHHHHhCCCCEEE
Confidence            99999999999999999999976543

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PRK01581 speE spermidine synthase; Validated

Probab=98.80  E-value=3.8e-08  Score=91.26  Aligned_cols=108  Identities=13%  Similarity=0.084  Sum_probs=76.6

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHH--Hhh--cCccCCCCeEEEEcCCCC-CCCCCCCcc
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDF--IKQ--DNTILTSNLALVRADVCR-LPFASGFVD  239 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~--~~~--~~~~~~~~i~~~~~d~~~-lp~~~~~fD  239 (319)
                      ..+.+||+||||+|..++.+.+..+..+|+++|+++++++.|++.  +..  .+....++++++.+|+.+ ++-..+.||
T Consensus       149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD  228 (374)
T PRK01581        149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD  228 (374)
T ss_pred             CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence            456799999999999999999876556999999999999999962  111  011125789999999876 344457899


Q ss_pred             EEEecccc--cC-CC--CHHHHHHHHHHhhcCCCeeEE
Q 020988          240 AVHAGAAL--HC-WP--SPSNAASVFSSSYSLLSICYL  272 (319)
Q Consensus       240 ~V~~~~vl--~h-~~--d~~~~l~el~rvlk~g~~~g~  272 (319)
                      +|++...-  .. ..  -...+++.+++.|+|+|.+..
T Consensus       229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~  266 (374)
T PRK01581        229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVC  266 (374)
T ss_pred             EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence            99986310  00 00  013567788888888876533

>TIGR00417 speE spermidine synthase

Probab=98.80  E-value=7.6e-08  Score=87.07  Aligned_cols=108  Identities=11%  Similarity=0.100  Sum_probs=77.7

Q ss_pred             CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcC-ccCCCCeEEEEcCCCCC-CCCCCCccEEEe
Q 020988          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-TILTSNLALVRADVCRL-PFASGFVDAVHA  243 (319)
Q Consensus       166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~-~~~~~~i~~~~~d~~~l-p~~~~~fD~V~~  243 (319)
                      .+.+|||||||+|.++..+.+..+..+++++|+++++++.+++.+...+ ....++++++.+|..+. ...+++||+|++
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~  151 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV  151 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence            4569999999999999999887655689999999999999999875432 11235788888887542 222478999998


Q ss_pred             cccccCCCC----HHHHHHHHHHhhcCCCeeEEE
Q 020988          244 GAALHCWPS----PSNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       244 ~~vl~h~~d----~~~~l~el~rvlk~g~~~g~~  273 (319)
                      ......-+.    ...+++.+.+.|+|+|.....
T Consensus       152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~  185 (270)
T TIGR00417       152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ  185 (270)
T ss_pred             eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence            654221111    346677888888888765543

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.78  E-value=2.2e-07  Score=76.02  Aligned_cols=121  Identities=12%  Similarity=0.242  Sum_probs=94.4

Q ss_pred             CCCcHHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEc
Q 020988          148 FPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA  226 (319)
Q Consensus       148 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~  226 (319)
                      .|......+.|...+....+..|||+|.|||.++..+.+++ +...++.+|.|++......+++        +.++++.+
T Consensus        30 ~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~--------p~~~ii~g  101 (194)
T COG3963          30 LPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY--------PGVNIING  101 (194)
T ss_pred             cCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC--------CCcccccc
Confidence            34455557778788888888999999999999999999986 4678999999999999998875        56678999


Q ss_pred             CCCCCC-----CCCCCccEEEecccccCCCCH--HHHHHHHHHhhcCCCeeEEEEee
Q 020988          227 DVCRLP-----FASGFVDAVHAGAALHCWPSP--SNAASVFSSSYSLLSICYLLQFR  276 (319)
Q Consensus       227 d~~~lp-----~~~~~fD~V~~~~vl~h~~d~--~~~l~el~rvlk~g~~~g~~~~~  276 (319)
                      |+.++.     ..++.||.|+|.--+-.++-.  .+.++++...+..||+...+.++
T Consensus       102 da~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg  158 (194)
T COG3963         102 DAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG  158 (194)
T ss_pred             chhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence            988764     567889999998877777533  24566666666677766666554

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=98.76  E-value=6.2e-08  Score=87.93  Aligned_cols=72  Identities=24%  Similarity=0.417  Sum_probs=60.1

Q ss_pred             eEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecc
Q 020988          169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (319)
Q Consensus       169 ~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (319)
                      +|||+|||+|..+..++...+..+|+|+|+|+.+++.|+++....+   ..++.++++|... +.. ++||+|+++-
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~---l~~~~~~~~dlf~-~~~-~~fDlIVsNP  184 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNG---LVRVLVVQSDLFE-PLR-GKFDLIVSNP  184 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcC---CccEEEEeeeccc-ccC-CceeEEEeCC
Confidence            7999999999999999999988899999999999999999998863   2556667766544 222 4899999974

>PLN02366 spermidine synthase

Probab=98.75  E-value=1.1e-07  Score=87.34  Aligned_cols=107  Identities=11%  Similarity=0.094  Sum_probs=78.3

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCc-cCCCCeEEEEcCCCCC-C-CCCCCccEE
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT-ILTSNLALVRADVCRL-P-FASGFVDAV  241 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~-~~~~~i~~~~~d~~~l-p-~~~~~fD~V  241 (319)
                      .++.+||+||||.|..++.+++.....+|+.+|+++.+++.+++.+...+. ...++++++.+|+... . .+++.||+|
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI  169 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI  169 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence            457899999999999999998874345899999999999999998754211 1246899999997542 1 225689999


Q ss_pred             EecccccCCCC----HHHHHHHHHHhhcCCCeeE
Q 020988          242 HAGAALHCWPS----PSNAASVFSSSYSLLSICY  271 (319)
Q Consensus       242 ~~~~vl~h~~d----~~~~l~el~rvlk~g~~~g  271 (319)
                      ++...-.+.+.    ...+++.+++.|+|+|...
T Consensus       170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv  203 (308)
T PLN02366        170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVC  203 (308)
T ss_pred             EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEE
Confidence            98543322221    1356778888888887654

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.75  E-value=1e-07  Score=91.94  Aligned_cols=85  Identities=20%  Similarity=0.343  Sum_probs=68.4

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC---
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL---  231 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l---  231 (319)
                      .+.+.+++...++.+|||+|||+|.++..+++...  +|+|+|+++.+++.|++++..++   ..+++++.+|+.+.   
T Consensus       281 ~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~--~V~~vE~~~~av~~a~~n~~~~~---~~nv~~~~~d~~~~l~~  355 (431)
T TIGR00479       281 VDRALEALELQGEELVVDAYCGVGTFTLPLAKQAK--SVVGIEVVPESVEKAQQNAELNG---IANVEFLAGTLETVLPK  355 (431)
T ss_pred             HHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCC--EEEEEEcCHHHHHHHHHHHHHhC---CCceEEEeCCHHHHHHH
Confidence            44555555556678999999999999999998765  89999999999999999987653   45899999998652   


Q ss_pred             -CCCCCCccEEEec
Q 020988          232 -PFASGFVDAVHAG  244 (319)
Q Consensus       232 -p~~~~~fD~V~~~  244 (319)
                       ++.+++||+|++.
T Consensus       356 ~~~~~~~~D~vi~d  369 (431)
T TIGR00479       356 QPWAGQIPDVLLLD  369 (431)
T ss_pred             HHhcCCCCCEEEEC
Confidence             2335679999874

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PRK03612 spermidine synthase; Provisional

Probab=98.72  E-value=6.6e-08  Score=95.23  Aligned_cols=108  Identities=13%  Similarity=0.097  Sum_probs=77.4

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHH--HhhcC--ccCCCCeEEEEcCCCCC-CCCCCCcc
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDF--IKQDN--TILTSNLALVRADVCRL-PFASGFVD  239 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~--~~~~~--~~~~~~i~~~~~d~~~l-p~~~~~fD  239 (319)
                      .++++|||||||+|..+..+.+.....+++++|+++++++.++++  +...+  ....++++++.+|..+. ...+++||
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD  375 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD  375 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence            456899999999999999998864336999999999999999983  32211  11246899999998763 32347899


Q ss_pred             EEEecccccCCCCH-----HHHHHHHHHhhcCCCeeEE
Q 020988          240 AVHAGAALHCWPSP-----SNAASVFSSSYSLLSICYL  272 (319)
Q Consensus       240 ~V~~~~vl~h~~d~-----~~~l~el~rvlk~g~~~g~  272 (319)
                      +|++...-...+..     .+.++.+++.|+|+|....
T Consensus       376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~  413 (521)
T PRK03612        376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVV  413 (521)
T ss_pred             EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEE
Confidence            99997543322221     2467788888888776543

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=98.71  E-value=1.8e-08  Score=86.30  Aligned_cols=104  Identities=16%  Similarity=0.192  Sum_probs=87.8

Q ss_pred             CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecc
Q 020988          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (319)
Q Consensus       166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (319)
                      ....++|||||-|...+.+...+ -.+++-+|.|..|++.++..-.     ..-.+...++|-+.++|.++++|+|+++.
T Consensus        72 ~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qd-----p~i~~~~~v~DEE~Ldf~ens~DLiisSl  145 (325)
T KOG2940|consen   72 SFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQD-----PSIETSYFVGDEEFLDFKENSVDLIISSL  145 (325)
T ss_pred             hCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCC-----CceEEEEEecchhcccccccchhhhhhhh
Confidence            45789999999999999999886 3589999999999999987521     12345677889999999999999999999


Q ss_pred             cccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          246 ALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       246 vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      .+|++.|....+.+++..+||.+++---++
T Consensus       146 slHW~NdLPg~m~~ck~~lKPDg~Fiasml  175 (325)
T KOG2940|consen  146 SLHWTNDLPGSMIQCKLALKPDGLFIASML  175 (325)
T ss_pred             hhhhhccCchHHHHHHHhcCCCccchhHHh
Confidence            999999988888889999998887654455

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.69  E-value=2.4e-07  Score=78.23  Aligned_cols=105  Identities=17%  Similarity=0.115  Sum_probs=70.0

Q ss_pred             ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC-C--C-CCCCCcc
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-L--P-FASGFVD  239 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~-l--p-~~~~~fD  239 (319)
                      ..++.+|||+|||+|..+..++......+|+..|.++ .++..+.+++.++.....++.+...|-.+ .  . ....+||
T Consensus        43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D  121 (173)
T PF10294_consen   43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD  121 (173)
T ss_dssp             GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred             hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence            4578899999999999999999884456999999999 99999998877532234566666655433 1  1 2346899


Q ss_pred             EEEecccccCCCCHHHHHHHHHHhhcCCCe
Q 020988          240 AVHAGAALHCWPSPSNAASVFSSSYSLLSI  269 (319)
Q Consensus       240 ~V~~~~vl~h~~d~~~~l~el~rvlk~g~~  269 (319)
                      +|+...+++.-.....+++-+.+++++.+.
T Consensus       122 ~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~  151 (173)
T PF10294_consen  122 VILASDVLYDEELFEPLVRTLKRLLKPNGK  151 (173)
T ss_dssp             EEEEES--S-GGGHHHHHHHHHHHBTT-TT
T ss_pred             EEEEecccchHHHHHHHHHHHHHHhCCCCE
Confidence            999999999877777888889999999887

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.68  E-value=9.8e-08  Score=97.24  Aligned_cols=103  Identities=13%  Similarity=0.043  Sum_probs=74.6

Q ss_pred             CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-CCCCCCccEEEec
Q 020988          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PFASGFVDAVHAG  244 (319)
Q Consensus       166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~~~~~fD~V~~~  244 (319)
                      ++.+|||+|||+|.++..+++.|. .+|+++|+|+.+++.|+++++.++.. ..+++++++|+.+. .-..++||+|++.
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~Ga-~~V~~vD~s~~al~~a~~N~~~ng~~-~~~v~~i~~D~~~~l~~~~~~fDlIilD  615 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALGGA-KSTTTVDMSNTYLEWAERNFALNGLS-GRQHRLIQADCLAWLKEAREQFDLIFID  615 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCC-ccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence            578999999999999999998753 47999999999999999999876421 14789999998653 1114689999985


Q ss_pred             c-c----------ccCCCCHHHHHHHHHHhhcCCCee
Q 020988          245 A-A----------LHCWPSPSNAASVFSSSYSLLSIC  270 (319)
Q Consensus       245 ~-v----------l~h~~d~~~~l~el~rvlk~g~~~  270 (319)
                      - .          +....+....++.+.++++++|..
T Consensus       616 PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l  652 (702)
T PRK11783        616 PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTL  652 (702)
T ss_pred             CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEE
Confidence            3 1          111122334566666677776644

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.66  E-value=1.4e-07  Score=89.29  Aligned_cols=86  Identities=14%  Similarity=0.205  Sum_probs=66.8

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-CC
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FA  234 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~  234 (319)
                      +.+.+++...++.+|||++||+|.++..++..+.  +|+|+|+++.+++.|+++.+..+   ..+++++.+|+.+.. ..
T Consensus       223 ~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~--~v~~vE~~~~av~~a~~N~~~~~---~~~~~~~~~d~~~~~~~~  297 (374)
T TIGR02085       223 ATARQWVREIPVTQMWDLFCGVGGFGLHCAGPDT--QLTGIEIESEAIACAQQSAQMLG---LDNLSFAALDSAKFATAQ  297 (374)
T ss_pred             HHHHHHHHhcCCCEEEEccCCccHHHHHHhhcCC--eEEEEECCHHHHHHHHHHHHHcC---CCcEEEEECCHHHHHHhc
Confidence            4444555444678999999999999999997764  99999999999999999987753   348999999986642 11


Q ss_pred             CCCccEEEeccc
Q 020988          235 SGFVDAVHAGAA  246 (319)
Q Consensus       235 ~~~fD~V~~~~v  246 (319)
                      ..+||+|++.--
T Consensus       298 ~~~~D~vi~DPP  309 (374)
T TIGR02085       298 MSAPELVLVNPP  309 (374)
T ss_pred             CCCCCEEEECCC
Confidence            246999988643

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PLN02476 O-methyltransferase

Probab=98.66  E-value=5.4e-07  Score=81.22  Aligned_cols=113  Identities=10%  Similarity=0.018  Sum_probs=80.4

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC-CC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LP  232 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp  232 (319)
                      .+.+..++...++.+|||||+++|+.+.++++.. +..+++.+|.+++..+.|++++++.|  ...+++++.+|+.+ ++
T Consensus       107 g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aG--l~~~I~li~GdA~e~L~  184 (278)
T PLN02476        107 AQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAG--VSHKVNVKHGLAAESLK  184 (278)
T ss_pred             HHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEcCHHHHHH
Confidence            4445555556678899999999999999998753 34589999999999999999998875  34689999999865 22


Q ss_pred             -C----CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          233 -F----ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       233 -~----~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                       +    .+++||+|+.-.-=   .+....++.+.+++++|   |++++
T Consensus       185 ~l~~~~~~~~FD~VFIDa~K---~~Y~~y~e~~l~lL~~G---GvIV~  226 (278)
T PLN02476        185 SMIQNGEGSSYDFAFVDADK---RMYQDYFELLLQLVRVG---GVIVM  226 (278)
T ss_pred             HHHhcccCCCCCEEEECCCH---HHHHHHHHHHHHhcCCC---cEEEE
Confidence             1    13689999885321   12234455555555554   55555

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.64  E-value=3.5e-07  Score=88.14  Aligned_cols=103  Identities=12%  Similarity=0.106  Sum_probs=69.2

Q ss_pred             CCeEEEEcCCcChHHHHHHhhC----CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEE
Q 020988          167 GGLLVDVSCGSGLFSRKFAKSG----TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH  242 (319)
Q Consensus       167 ~~~VLDiGcG~G~~~~~l~~~g----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~  242 (319)
                      +..|||||||+|.++..+++.+    ...+|++||-++.+....+++++.++  ...+|+++.+|++++..+ +++|+|+
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~--w~~~V~vi~~d~r~v~lp-ekvDIIV  263 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANG--WGDKVTVIHGDMREVELP-EKVDIIV  263 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTT--TTTTEEEEES-TTTSCHS-S-EEEEE
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcC--CCCeEEEEeCcccCCCCC-CceeEEE
Confidence            5789999999999987776664    34699999999998887777655543  457899999999998875 4999999


Q ss_pred             ecc--cccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          243 AGA--ALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       243 ~~~--vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      +-.  .+-.-.--.+.+....|.|||   +|+++.
T Consensus       264 SElLGsfg~nEl~pE~Lda~~rfLkp---~Gi~IP  295 (448)
T PF05185_consen  264 SELLGSFGDNELSPECLDAADRFLKP---DGIMIP  295 (448)
T ss_dssp             E---BTTBTTTSHHHHHHHGGGGEEE---EEEEES
T ss_pred             EeccCCccccccCHHHHHHHHhhcCC---CCEEeC
Confidence            832  222111222345555555555   466665

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=98.64  E-value=2e-07  Score=83.81  Aligned_cols=108  Identities=19%  Similarity=0.212  Sum_probs=76.4

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccC---CCCeEEEEcCCCC------CCCCC
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTIL---TSNLALVRADVCR------LPFAS  235 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~---~~~i~~~~~d~~~------lp~~~  235 (319)
                      .++..++|+|||-|.-+...-+.+ ...++|+|+++..++.|+++........   .-.+.|+.+|...      +++.+
T Consensus       116 ~~~~~~~~LgCGKGGDLlKw~kAg-I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d  194 (389)
T KOG1975|consen  116 KRGDDVLDLGCGKGGDLLKWDKAG-IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD  194 (389)
T ss_pred             ccccccceeccCCcccHhHhhhhc-ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence            567899999999998877777665 3589999999999999999887642110   1136788888743      45566


Q ss_pred             CCccEEEecccccCCC-CHH---HHHHHHHHhhcCCCeeEEEEee
Q 020988          236 GFVDAVHAGAALHCWP-SPS---NAASVFSSSYSLLSICYLLQFR  276 (319)
Q Consensus       236 ~~fD~V~~~~vl~h~~-d~~---~~l~el~rvlk~g~~~g~~~~~  276 (319)
                      .+||+|.|.+++|+-- +-+   .+++.+.+.|+|||   +++-+
T Consensus       195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG---~FIgT  236 (389)
T KOG1975|consen  195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGG---VFIGT  236 (389)
T ss_pred             CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCc---EEEEe
Confidence            6699999999999753 333   34445555555554   55443

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=98.63  E-value=2.2e-07  Score=88.30  Aligned_cols=79  Identities=20%  Similarity=0.231  Sum_probs=61.9

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC--C--CCCCccE
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--F--ASGFVDA  240 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~--~~~~fD~  240 (319)
                      .++.+|||+|||+|.++..++..+ ..+|+++|+|+.+++.|++++..++.. ..+++++.+|+.+.-  +  ..++||+
T Consensus       219 ~~g~rVLDlfsgtG~~~l~aa~~g-a~~V~~VD~s~~al~~a~~N~~~Ngl~-~~~v~~i~~D~~~~l~~~~~~~~~fDl  296 (396)
T PRK15128        219 VENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLD-LSKAEFVRDDVFKLLRTYRDRGEKFDV  296 (396)
T ss_pred             cCCCeEEEeccCCCHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-CCcEEEEEccHHHHHHHHHhcCCCCCE
Confidence            357899999999999988766543 458999999999999999999875311 137899999987641  1  2468999


Q ss_pred             EEecc
Q 020988          241 VHAGA  245 (319)
Q Consensus       241 V~~~~  245 (319)
                      |++.-
T Consensus       297 VilDP  301 (396)
T PRK15128        297 IVMDP  301 (396)
T ss_pred             EEECC
Confidence            99864

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.63  E-value=1.4e-07  Score=86.02  Aligned_cols=79  Identities=22%  Similarity=0.310  Sum_probs=65.9

Q ss_pred             ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (319)
                      ..+++.|||||||+|.++...++.| ..+|+++|.|.- ++.|++.+..++  ....++++.+.++++.++.+++|+|++
T Consensus        58 lf~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~i-a~~a~~iv~~N~--~~~ii~vi~gkvEdi~LP~eKVDiIvS  133 (346)
T KOG1499|consen   58 LFKDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSI-ADFARKIVKDNG--LEDVITVIKGKVEDIELPVEKVDIIVS  133 (346)
T ss_pred             hcCCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHH-HHHHHHHHHhcC--ccceEEEeecceEEEecCccceeEEee
Confidence            3468999999999999999999998 489999998774 588998887764  345689999999887666789999998


Q ss_pred             ccc
Q 020988          244 GAA  246 (319)
Q Consensus       244 ~~v  246 (319)
                      -+.
T Consensus       134 EWM  136 (346)
T KOG1499|consen  134 EWM  136 (346)
T ss_pred             hhh
Confidence            553

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.62  E-value=2e-07  Score=91.48  Aligned_cols=104  Identities=8%  Similarity=0.043  Sum_probs=81.3

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC--CCCCCCccEEE
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAVH  242 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD~V~  242 (319)
                      ..+..+||||||.|.++..+++..|...++|+|++...+..+.++....   ...|+.++..|+..+  -++++++|.|+
T Consensus       346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~---~l~N~~~~~~~~~~~~~~~~~~sv~~i~  422 (506)
T PRK01544        346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQ---NITNFLLFPNNLDLILNDLPNNSLDGIY  422 (506)
T ss_pred             CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHc---CCCeEEEEcCCHHHHHHhcCcccccEEE
Confidence            4567899999999999999999999999999999999999988887665   356888888887543  26678999999


Q ss_pred             ecccccCCCCH--------HHHHHHHHHhhcCCCeeE
Q 020988          243 AGAALHCWPSP--------SNAASVFSSSYSLLSICY  271 (319)
Q Consensus       243 ~~~vl~h~~d~--------~~~l~el~rvlk~g~~~g  271 (319)
                      +++.=-|....        ...++.+.++|++||...
T Consensus       423 i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~  459 (506)
T PRK01544        423 ILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLV  459 (506)
T ss_pred             EECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEE
Confidence            86432222111        366888999999887554

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.62  E-value=2.9e-07  Score=79.69  Aligned_cols=112  Identities=13%  Similarity=0.167  Sum_probs=79.8

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-C-
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P-  232 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p-  232 (319)
                      +.+..+.......+|||||+++|+-+.++++..+ ..+++.+|+++...+.|++.++..+  ...+++++.+|+.+. + 
T Consensus        35 ~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag--~~~~I~~~~gda~~~l~~  112 (205)
T PF01596_consen   35 QLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAG--LDDRIEVIEGDALEVLPE  112 (205)
T ss_dssp             HHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTT--GGGGEEEEES-HHHHHHH
T ss_pred             HHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcC--CCCcEEEEEeccHhhHHH
Confidence            4444444556678999999999999999998754 5799999999999999999998764  346899999998652 2 


Q ss_pred             ----CCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          233 ----FASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       233 ----~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                          -..++||+|+.-..      .......+..+++.++++|+++.
T Consensus       113 l~~~~~~~~fD~VFiDa~------K~~y~~y~~~~~~ll~~ggvii~  153 (205)
T PF01596_consen  113 LANDGEEGQFDFVFIDAD------KRNYLEYFEKALPLLRPGGVIIA  153 (205)
T ss_dssp             HHHTTTTTSEEEEEEEST------GGGHHHHHHHHHHHEEEEEEEEE
T ss_pred             HHhccCCCceeEEEEccc------ccchhhHHHHHhhhccCCeEEEE
Confidence                11358999998542      23333334444445566677776

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PLN02672 methionine S-methyltransferase

Probab=98.62  E-value=2.1e-07  Score=97.28  Aligned_cols=79  Identities=15%  Similarity=0.178  Sum_probs=63.2

Q ss_pred             CCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCc-------------cCCCCeEEEEcCCCCCCC
Q 020988          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT-------------ILTSNLALVRADVCRLPF  233 (319)
Q Consensus       167 ~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~-------------~~~~~i~~~~~d~~~lp~  233 (319)
                      +.+|||+|||+|..+..+++..+..+|+|+|+|+.+++.|++++..++.             ....+++++.+|+.+...
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~  198 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR  198 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence            4689999999999999999987777999999999999999999876421             112479999999876431


Q ss_pred             C-CCCccEEEecc
Q 020988          234 A-SGFVDAVHAGA  245 (319)
Q Consensus       234 ~-~~~fD~V~~~~  245 (319)
                      . ..+||+|+++-
T Consensus       199 ~~~~~fDlIVSNP  211 (1082)
T PLN02672        199 DNNIELDRIVGCI  211 (1082)
T ss_pred             ccCCceEEEEECC
Confidence            1 23699999964

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.61  E-value=3.8e-07  Score=79.13  Aligned_cols=111  Identities=8%  Similarity=0.027  Sum_probs=82.1

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEE-cCCCCC
Q 020988          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR-ADVCRL  231 (319)
Q Consensus       154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~-~d~~~l  231 (319)
                      .-..+..++....+++|||||.+.|+-+.+++...+ +.+++.+|+++++.+.|++++++.+  ...++.++. +|..+.
T Consensus        47 ~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag--~~~~i~~~~~gdal~~  124 (219)
T COG4122          47 TGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAG--VDDRIELLLGGDALDV  124 (219)
T ss_pred             HHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcC--CcceEEEEecCcHHHH
Confidence            345555555667889999999999999999998877 7899999999999999999999875  345578888 466442


Q ss_pred             -C-CCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCe
Q 020988          232 -P-FASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSI  269 (319)
Q Consensus       232 -p-~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~  269 (319)
                       . ...++||+|++-..=.   +....++.+.++++|||.
T Consensus       125 l~~~~~~~fDliFIDadK~---~yp~~le~~~~lLr~GGl  161 (219)
T COG4122         125 LSRLLDGSFDLVFIDADKA---DYPEYLERALPLLRPGGL  161 (219)
T ss_pred             HHhccCCCccEEEEeCChh---hCHHHHHHHHHHhCCCcE
Confidence             2 3468999998743211   223456666666666653

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.61  E-value=1.1e-07  Score=75.89  Aligned_cols=82  Identities=20%  Similarity=0.380  Sum_probs=67.8

Q ss_pred             hhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEE
Q 020988          162 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV  241 (319)
Q Consensus       162 l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V  241 (319)
                      ...-.|++++|+|||.|-++....-.+ +..|+|+|+++++++.++++....    .-+++++++|+.++.+..+.||.+
T Consensus        44 ygdiEgkkl~DLgcgcGmLs~a~sm~~-~e~vlGfDIdpeALEIf~rNaeEf----EvqidlLqcdildle~~~g~fDta  118 (185)
T KOG3420|consen   44 YGDIEGKKLKDLGCGCGMLSIAFSMPK-NESVLGFDIDPEALEIFTRNAEEF----EVQIDLLQCDILDLELKGGIFDTA  118 (185)
T ss_pred             hccccCcchhhhcCchhhhHHHhhcCC-CceEEeeecCHHHHHHHhhchHHh----hhhhheeeeeccchhccCCeEeeE
Confidence            344578999999999999986555443 468999999999999999998774    457799999999988888999999


Q ss_pred             Eeccccc
Q 020988          242 HAGAALH  248 (319)
Q Consensus       242 ~~~~vl~  248 (319)
                      +.+.-+.
T Consensus       119 viNppFG  125 (185)
T KOG3420|consen  119 VINPPFG  125 (185)
T ss_pred             EecCCCC
Confidence            9876443

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.60  E-value=5.4e-07  Score=81.76  Aligned_cols=123  Identities=13%  Similarity=0.124  Sum_probs=83.0

Q ss_pred             CCCCcHHHHHHHHHHhhcc-CCCeEEEEcCCcCh----HHHHHHhhC----CCCeEEEEeCCHHHHHHHHHHH-------
Q 020988          147 GFPGPDEEFKMAQEYFKSA-QGGLLVDVSCGSGL----FSRKFAKSG----TYSGVVALDFSENMLRQCYDFI-------  210 (319)
Q Consensus       147 ~~~~~~~~~~~l~~~l~~~-~~~~VLDiGcG~G~----~~~~l~~~g----~~~~v~gvD~s~~~l~~a~~~~-------  210 (319)
                      .|+.....++.+.+.+... ..-+|+..||+||.    ++..+.+..    ...+|+|+|+|+.+++.|++-.       
T Consensus        95 ~FFRd~~~f~~L~~~~~~~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r  174 (287)
T PRK10611         95 AFFREAHHFPILAEHARRRSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELK  174 (287)
T ss_pred             CccCCcHHHHHHHHHHHhcCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHh
Confidence            4555555556665544322 23699999999995    333333432    1358999999999999998631       


Q ss_pred             -----------hhc-----C-----ccCCCCeEEEEcCCCCCCCC-CCCccEEEecccccCCCC--HHHHHHHHHHhhcC
Q 020988          211 -----------KQD-----N-----TILTSNLALVRADVCRLPFA-SGFVDAVHAGAALHCWPS--PSNAASVFSSSYSL  266 (319)
Q Consensus       211 -----------~~~-----~-----~~~~~~i~~~~~d~~~lp~~-~~~fD~V~~~~vl~h~~d--~~~~l~el~rvlk~  266 (319)
                                 ...     +     ......|.|.+.|+.+.+++ .+.||+|+|.+++.|+..  ..++++.+.+.|+|
T Consensus       175 ~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~p  254 (287)
T PRK10611        175 TLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKP  254 (287)
T ss_pred             cCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCC
Confidence                       000     0     00124678888998875543 578999999999999954  45778888888888


Q ss_pred             CCe
Q 020988          267 LSI  269 (319)
Q Consensus       267 g~~  269 (319)
                      ||.
T Consensus       255 gG~  257 (287)
T PRK10611        255 DGL  257 (287)
T ss_pred             CcE
Confidence            874

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.57  E-value=5.7e-07  Score=76.30  Aligned_cols=110  Identities=17%  Similarity=0.217  Sum_probs=77.5

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCe---------EEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEE
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSG---------VVALDFSENMLRQCYDFIKQDNTILTSNLALVR  225 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~---------v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~  225 (319)
                      ...|..+....++..|||--||+|.++.+.+..+.+..         ++|.|+++.+++.|+++++..+  ....+.+.+
T Consensus        17 A~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag--~~~~i~~~~   94 (179)
T PF01170_consen   17 AAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG--VEDYIDFIQ   94 (179)
T ss_dssp             HHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT---CGGEEEEE
T ss_pred             HHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc--cCCceEEEe
Confidence            34555556667788999999999999998887766555         8899999999999999998764  345689999


Q ss_pred             cCCCCCCCCCCCccEEEecccccCC-CCH-------HHHHHHHHHhhcC
Q 020988          226 ADVCRLPFASGFVDAVHAGAALHCW-PSP-------SNAASVFSSSYSL  266 (319)
Q Consensus       226 ~d~~~lp~~~~~fD~V~~~~vl~h~-~d~-------~~~l~el~rvlk~  266 (319)
                      .|+.++++.++++|+|+++--...- .+.       ..+++++.+++++
T Consensus        95 ~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~  143 (179)
T PF01170_consen   95 WDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP  143 (179)
T ss_dssp             --GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred             cchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence            9999999778899999996533321 111       1335666667776

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.57  E-value=9.5e-07  Score=75.58  Aligned_cols=121  Identities=14%  Similarity=0.176  Sum_probs=82.7

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCcc-CCCCeEEEEcCCCCC-
Q 020988          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI-LTSNLALVRADVCRL-  231 (319)
Q Consensus       154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~i~~~~~d~~~l-  231 (319)
                      +.+.+.+++... +.+|||||+|||.....+++..|...-.-.|+++..+...+..+.+.+.. ....   +..|+..- 
T Consensus        14 Il~vL~~~l~~~-~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P---~~lDv~~~~   89 (204)
T PF06080_consen   14 ILEVLKQYLPDS-GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPP---LALDVSAPP   89 (204)
T ss_pred             HHHHHHHHhCcc-CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCC---eEeecCCCC
Confidence            456777776543 23699999999999999999999888889999998876666665553211 1122   23355443 


Q ss_pred             -CC------CCCCccEEEecccccCCCCH--HHHHHHHHHhhcCCCeeEEEEeeccch
Q 020988          232 -PF------ASGFVDAVHAGAALHCWPSP--SNAASVFSSSYSLLSICYLLQFRYTKI  280 (319)
Q Consensus       232 -p~------~~~~fD~V~~~~vl~h~~d~--~~~l~el~rvlk~g~~~g~~~~~~~~~  280 (319)
                       +.      ..++||+|++.+++|-.+-.  +.+++...++|+++|.+.  ++.++..
T Consensus        90 w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~--~YGPF~~  145 (204)
T PF06080_consen   90 WPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLF--LYGPFNR  145 (204)
T ss_pred             CccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEE--EeCCccc
Confidence             22      24699999999999976532  466778888888876533  4444433

The function of this family is unknown.

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.56  E-value=7.3e-07  Score=81.80  Aligned_cols=117  Identities=17%  Similarity=0.172  Sum_probs=89.5

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEc-CCCCCC
Q 020988          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DVCRLP  232 (319)
Q Consensus       154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~-d~~~lp  232 (319)
                      ..+.+.++....+|..|||-=||||.++..+.-.|.  +++|.|++..|++-|+.+++..+   .....+... |+..+|
T Consensus       185 lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~--~viG~Did~~mv~gak~Nl~~y~---i~~~~~~~~~Da~~lp  259 (347)
T COG1041         185 LARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA--RVIGSDIDERMVRGAKINLEYYG---IEDYPVLKVLDATNLP  259 (347)
T ss_pred             HHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc--eEeecchHHHHHhhhhhhhhhhC---cCceeEEEecccccCC
Confidence            456667777778899999999999999999988877  99999999999999999998752   345555555 999999


Q ss_pred             CCCCCccEEEeccccc-----CCCC----HHHHHHHHHHhhcCCCeeEEEEe
Q 020988          233 FASGFVDAVHAGAALH-----CWPS----PSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       233 ~~~~~fD~V~~~~vl~-----h~~d----~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      +++.+||.|.+---.-     ....    ..++++.+.++|+++|.......
T Consensus       260 l~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p  311 (347)
T COG1041         260 LRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP  311 (347)
T ss_pred             CCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence            9988999999732111     1111    24668888889988665444333

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.54  E-value=9.3e-07  Score=81.42  Aligned_cols=82  Identities=15%  Similarity=0.133  Sum_probs=61.1

Q ss_pred             CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhc-CccCCCCeEEEE-cCCCCCC----CCCCCcc
Q 020988          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVR-ADVCRLP----FASGFVD  239 (319)
Q Consensus       166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~i~~~~-~d~~~lp----~~~~~fD  239 (319)
                      ++.++||||||+|.....++...+..+++|+|+++.+++.|+++++.+ +  ...++.+.. .|...+.    ..++.||
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~--l~~~I~~~~~~~~~~i~~~i~~~~~~fD  191 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPG--LNGAIRLRLQKDSKAIFKGIIHKNERFD  191 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccC--CcCcEEEEEccchhhhhhcccccCCceE
Confidence            468999999999988777776655669999999999999999999874 2  335677754 3332221    2357899


Q ss_pred             EEEecccccC
Q 020988          240 AVHAGAALHC  249 (319)
Q Consensus       240 ~V~~~~vl~h  249 (319)
                      +|+|+--++-
T Consensus       192 livcNPPf~~  201 (321)
T PRK11727        192 ATLCNPPFHA  201 (321)
T ss_pred             EEEeCCCCcC
Confidence            9999865553

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=98.54  E-value=6.3e-07  Score=77.65  Aligned_cols=47  Identities=17%  Similarity=0.324  Sum_probs=42.7

Q ss_pred             CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhh
Q 020988          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ  212 (319)
Q Consensus       166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~  212 (319)
                      .+..+|||||.+|.++..+++......+.|+||++..++.|++.++.
T Consensus        58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~  104 (288)
T KOG2899|consen   58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRF  104 (288)
T ss_pred             CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccc
Confidence            56789999999999999999997677899999999999999998754

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.54  E-value=1.5e-06  Score=74.58  Aligned_cols=111  Identities=16%  Similarity=0.135  Sum_probs=66.6

Q ss_pred             CCCeEEEEcCCcCh----HHHHHHhh-----CCCCeEEEEeCCHHHHHHHHHHH-------------------hhcCc--
Q 020988          166 QGGLLVDVSCGSGL----FSRKFAKS-----GTYSGVVALDFSENMLRQCYDFI-------------------KQDNT--  215 (319)
Q Consensus       166 ~~~~VLDiGcG~G~----~~~~l~~~-----g~~~~v~gvD~s~~~l~~a~~~~-------------------~~~~~--  215 (319)
                      +.-+|+.+||++|.    ++..+.+.     ....+++|+|+|+.+++.|++-.                   ...+.  
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            45789999999995    33333341     22468999999999999998411                   00000  


Q ss_pred             ----cCCCCeEEEEcCCCCCCCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEeec
Q 020988          216 ----ILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFRY  277 (319)
Q Consensus       216 ----~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~~  277 (319)
                          ....++.|.+.|+.+.+...+.||+|+|.+||-++ +++...+-+.++...+.++|.++...
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF-~~~~~~~vl~~l~~~L~pgG~L~lG~  175 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYF-DPETQQRVLRRLHRSLKPGGYLFLGH  175 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS--HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred             eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEe-CHHHHHHHHHHHHHHcCCCCEEEEec
Confidence                01147899999998844456899999999999999 55544566666777777778887743

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=98.48  E-value=7.1e-07  Score=76.80  Aligned_cols=106  Identities=11%  Similarity=0.109  Sum_probs=73.4

Q ss_pred             CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecc
Q 020988          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (319)
Q Consensus       166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (319)
                      ...+.||.|+|-|+.+..+.-.. ..+|-.+|+.+..++.|++.+...   ...-..+++..+++......+||+|++..
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~---~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW  130 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKD---NPRVGEFYCVGLQDFTPEEGKYDLIWIQW  130 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCG---GCCEEEEEES-GGG----TT-EEEEEEES
T ss_pred             CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhccc---CCCcceEEecCHhhccCCCCcEeEEEehH
Confidence            45789999999999998775543 459999999999999999877542   12345677777777654567999999999


Q ss_pred             cccCCCCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988          246 ALHCWPSPSNAASVFSSSYSLLSICYLLQFR  276 (319)
Q Consensus       246 vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~  276 (319)
                      ++.|+.| +.+++-+.|+.+.+.++|+++++
T Consensus       131 ~lghLTD-~dlv~fL~RCk~~L~~~G~IvvK  160 (218)
T PF05891_consen  131 CLGHLTD-EDLVAFLKRCKQALKPNGVIVVK  160 (218)
T ss_dssp             -GGGS-H-HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhccCCH-HHHHHHHHHHHHhCcCCcEEEEE
Confidence            9999976 45566677766666777888873

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.48  E-value=4.4e-06  Score=74.64  Aligned_cols=110  Identities=9%  Similarity=0.099  Sum_probs=85.8

Q ss_pred             ccCCCeEEEEcCCcChHHHHHHhhCCC--CeEEEEeCCHHHHHHHHHHHhhcCccCCCCe-EEEEcCCCCCC---CCCCC
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFAKSGTY--SGVVALDFSENMLRQCYDFIKQDNTILTSNL-ALVRADVCRLP---FASGF  237 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i-~~~~~d~~~lp---~~~~~  237 (319)
                      ...+-+||||.||.|+....+....+.  .+|...|.|+..++..++.+++.+   ..++ +|.++|+.+..   --+..
T Consensus       133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~g---L~~i~~f~~~dAfd~~~l~~l~p~  209 (311)
T PF12147_consen  133 QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERG---LEDIARFEQGDAFDRDSLAALDPA  209 (311)
T ss_pred             cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcC---CccceEEEecCCCCHhHhhccCCC
Confidence            346779999999999999888888764  689999999999999999998874   4454 99999987632   22446


Q ss_pred             ccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988          238 VDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFR  276 (319)
Q Consensus       238 fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~  276 (319)
                      .++++.++.+|.++|-+.+-+.+..+.....++|.++++
T Consensus       210 P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyT  248 (311)
T PF12147_consen  210 PTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYT  248 (311)
T ss_pred             CCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEc
Confidence            799999999999998665444455555556666677774

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.48  E-value=4.3e-06  Score=71.57  Aligned_cols=109  Identities=15%  Similarity=0.132  Sum_probs=75.6

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-C-C-CC-CCccE
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P-F-AS-GFVDA  240 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p-~-~~-~~fD~  240 (319)
                      ..+.+|||++||+|.++..++.+|. ..|+++|.++.+++.++++++..+  ...+++++.+|+... . + .. ..||+
T Consensus        48 ~~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~--~~~~~~~~~~D~~~~l~~~~~~~~~~dv  124 (189)
T TIGR00095        48 IQGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLK--SGEQAEVVRNSALRALKFLAKKPTFDNV  124 (189)
T ss_pred             cCCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhC--CcccEEEEehhHHHHHHHhhccCCCceE
Confidence            3578999999999999999999875 589999999999999999987753  224688999998442 2 1 12 24788


Q ss_pred             EEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEeecc
Q 020988          241 VHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFRYT  278 (319)
Q Consensus       241 V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~~~  278 (319)
                      |+.---+.. ......++.+.+ ...+..+++++.+..
T Consensus       125 v~~DPPy~~-~~~~~~l~~l~~-~~~l~~~~iiv~E~~  160 (189)
T TIGR00095       125 IYLDPPFFN-GALQALLELCEN-NWILEDTVLIVVEED  160 (189)
T ss_pred             EEECcCCCC-CcHHHHHHHHHH-CCCCCCCeEEEEEec
Confidence            877543332 223444444433 234566677777544

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.48  E-value=1.3e-06  Score=82.69  Aligned_cols=100  Identities=14%  Similarity=0.096  Sum_probs=75.0

Q ss_pred             CCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEeccc
Q 020988          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA  246 (319)
Q Consensus       167 ~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v  246 (319)
                      +.+|||++||+|.++..++.......|+++|+++.+++.++++++.++   ..++.+..+|+..+-...+.||+|++.- 
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~---~~~~~v~~~Da~~~l~~~~~fD~V~lDP-  133 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNG---LENEKVFNKDANALLHEERKFDVVDIDP-  133 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC---CCceEEEhhhHHHHHhhcCCCCEEEECC-
Confidence            468999999999999999876544589999999999999999987753   3456788899866422146799998853 


Q ss_pred             ccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988          247 LHCWPSPSNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       247 l~h~~d~~~~l~el~rvlk~g~~~g~~  273 (319)
                      .   ..+..++....+.+++++..++-
T Consensus       134 ~---Gs~~~~l~~al~~~~~~gilyvS  157 (382)
T PRK04338        134 F---GSPAPFLDSAIRSVKRGGLLCVT  157 (382)
T ss_pred             C---CCcHHHHHHHHHHhcCCCEEEEE
Confidence            2   34566677756666776655544

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.47  E-value=1.2e-06  Score=77.83  Aligned_cols=84  Identities=15%  Similarity=0.213  Sum_probs=70.7

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (319)
                      .+.+.+.....++..|||||+|.|.++..+++.+.  +|+++|+++.+++..+++...     ..+++++.+|+...+++
T Consensus        19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~~-----~~n~~vi~~DaLk~d~~   91 (259)
T COG0030          19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA--RVTAIEIDRRLAEVLKERFAP-----YDNLTVINGDALKFDFP   91 (259)
T ss_pred             HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEEeCHHHHHHHHHhccc-----ccceEEEeCchhcCcch
Confidence            35566666667789999999999999999999987  899999999999999998753     46999999999998876


Q ss_pred             CC-CccEEEecc
Q 020988          235 SG-FVDAVHAGA  245 (319)
Q Consensus       235 ~~-~fD~V~~~~  245 (319)
                      +- .++.|+++-
T Consensus        92 ~l~~~~~vVaNl  103 (259)
T COG0030          92 SLAQPYKVVANL  103 (259)
T ss_pred             hhcCCCEEEEcC
Confidence            43 577887753

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=98.46  E-value=7.8e-07  Score=83.17  Aligned_cols=106  Identities=22%  Similarity=0.209  Sum_probs=87.7

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (319)
                      .++..++|+|||.|.....+.... ...++|+|.++..+..+........  ......++.+|+...|+.+..||.|.+.
T Consensus       109 ~~~~~~~~~~~g~~~~~~~i~~f~-~~~~~Gl~~n~~e~~~~~~~~~~~~--l~~k~~~~~~~~~~~~fedn~fd~v~~l  185 (364)
T KOG1269|consen  109 FPGSKVLDVGTGVGGPSRYIAVFK-KAGVVGLDNNAYEAFRANELAKKAY--LDNKCNFVVADFGKMPFEDNTFDGVRFL  185 (364)
T ss_pred             cccccccccCcCcCchhHHHHHhc-cCCccCCCcCHHHHHHHHHHHHHHH--hhhhcceehhhhhcCCCCccccCcEEEE
Confidence            466789999999999998887764 4689999999988888776554432  2234455888999999999999999999


Q ss_pred             ccccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988          245 AALHCWPSPSNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       245 ~vl~h~~d~~~~l~el~rvlk~g~~~g~~  273 (319)
                      .+.+|.+++..+++|+.|+++|||.....
T Consensus       186 d~~~~~~~~~~~y~Ei~rv~kpGG~~i~~  214 (364)
T KOG1269|consen  186 EVVCHAPDLEKVYAEIYRVLKPGGLFIVK  214 (364)
T ss_pred             eecccCCcHHHHHHHHhcccCCCceEEeH
Confidence            99999999999999999999998865544

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.44  E-value=2.4e-06  Score=75.95  Aligned_cols=114  Identities=11%  Similarity=0.114  Sum_probs=83.2

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-
Q 020988          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-  231 (319)
Q Consensus       154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-  231 (319)
                      ..+.+..++......+|||||+++|+-+.+++... +..+++.+|.+++..+.|++.++..+  ...+++++.+|+.+. 
T Consensus        67 ~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag--~~~~I~~~~G~a~e~L  144 (247)
T PLN02589         67 EGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAG--VAHKIDFREGPALPVL  144 (247)
T ss_pred             HHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCC--CCCceEEEeccHHHHH
Confidence            34555555556677899999999999999888763 45699999999999999999998864  357899999998652 


Q ss_pred             C-C-----CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          232 P-F-----ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       232 p-~-----~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      + +     ..++||+|+.-.      +.......+..+++.+.++|++++
T Consensus       145 ~~l~~~~~~~~~fD~iFiDa------dK~~Y~~y~~~~l~ll~~GGviv~  188 (247)
T PLN02589        145 DQMIEDGKYHGTFDFIFVDA------DKDNYINYHKRLIDLVKVGGVIGY  188 (247)
T ss_pred             HHHHhccccCCcccEEEecC------CHHHhHHHHHHHHHhcCCCeEEEE
Confidence            2 1     136899998853      234444444444555566666666

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.44  E-value=2.5e-06  Score=72.49  Aligned_cols=111  Identities=22%  Similarity=0.248  Sum_probs=80.0

Q ss_pred             HHHHHHhh--ccCCCeEEEEcCCcChHHHHHHhh--CCCCeEEEEeCCHHHHHHHHHHHhhcCc-------cCCCCeEEE
Q 020988          156 KMAQEYFK--SAQGGLLVDVSCGSGLFSRKFAKS--GTYSGVVALDFSENMLRQCYDFIKQDNT-------ILTSNLALV  224 (319)
Q Consensus       156 ~~l~~~l~--~~~~~~VLDiGcG~G~~~~~l~~~--g~~~~v~gvD~s~~~l~~a~~~~~~~~~-------~~~~~i~~~  224 (319)
                      ..+.++|.  ..|+.+.||+|.|+|+++..++..  .+...++|||.-++.++.+++++.+.-.       ....++.++
T Consensus        70 a~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~iv  149 (237)
T KOG1661|consen   70 ATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIV  149 (237)
T ss_pred             HHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEE
Confidence            34445554  678999999999999999888755  2333559999999999999999876420       113568889


Q ss_pred             EcCCCCCCCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEE
Q 020988          225 RADVCRLPFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYL  272 (319)
Q Consensus       225 ~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~  272 (319)
                      ++|.........+||.|++...-.-      ..+++...|+++|..-+
T Consensus       150 vGDgr~g~~e~a~YDaIhvGAaa~~------~pq~l~dqL~~gGrlli  191 (237)
T KOG1661|consen  150 VGDGRKGYAEQAPYDAIHVGAAASE------LPQELLDQLKPGGRLLI  191 (237)
T ss_pred             eCCccccCCccCCcceEEEccCccc------cHHHHHHhhccCCeEEE
Confidence            9999887767889999999854332      24445566666654433

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.43  E-value=8e-07  Score=80.89  Aligned_cols=95  Identities=19%  Similarity=0.238  Sum_probs=73.5

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC--
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--  232 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--  232 (319)
                      +.+.+.+...+++.+||.+||.|..+..+++..+ ..+|+|+|.++.+++.+++++..     ..++.++.+|+.++.  
T Consensus         9 ~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-----~~ri~~i~~~f~~l~~~   83 (296)
T PRK00050          9 DEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-----FGRFTLVHGNFSNLKEV   83 (296)
T ss_pred             HHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-----CCcEEEEeCCHHHHHHH
Confidence            4555666667889999999999999999999864 57999999999999999988743     258999999998753  


Q ss_pred             CCC--CCccEEEecc--cccCCCCHHH
Q 020988          233 FAS--GFVDAVHAGA--ALHCWPSPSN  255 (319)
Q Consensus       233 ~~~--~~fD~V~~~~--vl~h~~d~~~  255 (319)
                      ..+  .++|.|++..  .-+++.++++
T Consensus        84 l~~~~~~vDgIl~DLGvSs~Qld~~~R  110 (296)
T PRK00050         84 LAEGLGKVDGILLDLGVSSPQLDDAER  110 (296)
T ss_pred             HHcCCCccCEEEECCCccccccCCCcC
Confidence            112  2799999865  3334545443

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=98.42  E-value=2.8e-07  Score=87.82  Aligned_cols=106  Identities=18%  Similarity=0.198  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHhhc----cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEE---eCCHHHHHHHHHHHhhcCccCCCCeEEE
Q 020988          152 DEEFKMAQEYFKS----AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVAL---DFSENMLRQCYDFIKQDNTILTSNLALV  224 (319)
Q Consensus       152 ~~~~~~l~~~l~~----~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gv---D~s~~~l~~a~~~~~~~~~~~~~~i~~~  224 (319)
                      +...+.+.+.+..    ..-..+||||||+|.|+..+.+++-  .+..+   |..+..++.|.++          ++..+
T Consensus        99 ~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V--~t~s~a~~d~~~~qvqfaleR----------Gvpa~  166 (506)
T PF03141_consen   99 DHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNV--TTMSFAPNDEHEAQVQFALER----------GVPAM  166 (506)
T ss_pred             HHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCc--eEEEcccccCCchhhhhhhhc----------Ccchh
Confidence            3445566666654    2223689999999999999998742  33222   4445566677655          23333


Q ss_pred             EcC--CCCCCCCCCCccEEEecccccCCC-CHHHHHHHHHHhhcCCCe
Q 020988          225 RAD--VCRLPFASGFVDAVHAGAALHCWP-SPSNAASVFSSSYSLLSI  269 (319)
Q Consensus       225 ~~d--~~~lp~~~~~fD~V~~~~vl~h~~-d~~~~l~el~rvlk~g~~  269 (319)
                      .+-  ..+|||++++||+|+|..++-.+. +....+-|+.|+|+|||.
T Consensus       167 ~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGy  214 (506)
T PF03141_consen  167 IGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGY  214 (506)
T ss_pred             hhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCce
Confidence            333  467999999999999988666553 334678889999988875

; GO: 0008168 methyltransferase activity

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=98.40  E-value=3e-07  Score=81.57  Aligned_cols=97  Identities=20%  Similarity=0.272  Sum_probs=79.9

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCe-EEEEcCCCCCCCCCCCccEEEe
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNL-ALVRADVCRLPFASGFVDAVHA  243 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i-~~~~~d~~~lp~~~~~fD~V~~  243 (319)
                      ..+..++|+|||+|..+..    .|...++|.|.+...+..+++.          +. ....+|+..+|+++.+||.+++
T Consensus        44 ~~gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~~----------~~~~~~~ad~l~~p~~~~s~d~~ls  109 (293)
T KOG1331|consen   44 PTGSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKRS----------GGDNVCRADALKLPFREESFDAALS  109 (293)
T ss_pred             CCcceeeecccCCcccCcC----CCcceeeecchhhhhccccccC----------CCceeehhhhhcCCCCCCccccchh
Confidence            3478899999999976432    2666899999999998888763          33 5788999999999999999999


Q ss_pred             cccccCCCCH---HHHHHHHHHhhcCCCeeEEEEe
Q 020988          244 GAALHCWPSP---SNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       244 ~~vl~h~~d~---~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      ..++||+...   ..+++|+.|+++|||..-+...
T Consensus       110 iavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvw  144 (293)
T KOG1331|consen  110 IAVIHHLSTRERRERALEELLRVLRPGGNALVYVW  144 (293)
T ss_pred             hhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence            9999999764   4678889999999988666655

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=98.40  E-value=2.3e-06  Score=75.49  Aligned_cols=89  Identities=15%  Similarity=0.251  Sum_probs=67.1

Q ss_pred             HHHHHHHhhcc---CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCC--
Q 020988          155 FKMAQEYFKSA---QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC--  229 (319)
Q Consensus       155 ~~~l~~~l~~~---~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~--  229 (319)
                      .+.+.+.+...   .+..|||+|||+|..+..++...++..|+++|.|+.++..|.++.....  ...++.++..+++  
T Consensus       134 V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~--l~g~i~v~~~~me~d  211 (328)
T KOG2904|consen  134 VEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLK--LSGRIEVIHNIMESD  211 (328)
T ss_pred             HHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHh--hcCceEEEecccccc
Confidence            45555555332   4457999999999999999999889999999999999999999887643  3456666644332  


Q ss_pred             ---CCCCCCCCccEEEecc
Q 020988          230 ---RLPFASGFVDAVHAGA  245 (319)
Q Consensus       230 ---~lp~~~~~fD~V~~~~  245 (319)
                         ..+..++++|+++++-
T Consensus       212 ~~~~~~l~~~~~dllvsNP  230 (328)
T KOG2904|consen  212 ASDEHPLLEGKIDLLVSNP  230 (328)
T ss_pred             cccccccccCceeEEecCC
Confidence               2345678999999975

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.35  E-value=3.2e-06  Score=74.51  Aligned_cols=84  Identities=17%  Similarity=0.247  Sum_probs=70.3

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (319)
                      +.+.+....+++..|||||.|||.++..+.+.+.  +|+++|+++.|+....++.+.  ......+.++.+|+...+++ 
T Consensus        48 ~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k--kVvA~E~Dprmvael~krv~g--tp~~~kLqV~~gD~lK~d~P-  122 (315)
T KOG0820|consen   48 DQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK--KVVAVEIDPRMVAELEKRVQG--TPKSGKLQVLHGDFLKTDLP-  122 (315)
T ss_pred             HHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC--eEEEEecCcHHHHHHHHHhcC--CCccceeeEEecccccCCCc-
Confidence            4445555677899999999999999999999988  999999999999999998754  23347899999999888754 


Q ss_pred             CCccEEEecc
Q 020988          236 GFVDAVHAGA  245 (319)
Q Consensus       236 ~~fD~V~~~~  245 (319)
                       .||.++++-
T Consensus       123 -~fd~cVsNl  131 (315)
T KOG0820|consen  123 -RFDGCVSNL  131 (315)
T ss_pred             -ccceeeccC
Confidence             699998853

>PLN02823 spermine synthase

Probab=98.33  E-value=5.4e-06  Score=77.05  Aligned_cols=105  Identities=13%  Similarity=0.117  Sum_probs=76.3

Q ss_pred             CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcC-ccCCCCeEEEEcCCCCC-CCCCCCccEEEe
Q 020988          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-TILTSNLALVRADVCRL-PFASGFVDAVHA  243 (319)
Q Consensus       166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~-~~~~~~i~~~~~d~~~l-p~~~~~fD~V~~  243 (319)
                      .+.+||.||+|.|..++.+.+..+..+++.+|+++.+++.|++.+...+ ....++++++.+|.... ...+++||+|++
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~  182 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG  182 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence            4679999999999999999887555689999999999999999875321 11247899999998663 334578999998


Q ss_pred             ccc-------ccCCCCHHHHHH-HHHHhhcCCCeeE
Q 020988          244 GAA-------LHCWPSPSNAAS-VFSSSYSLLSICY  271 (319)
Q Consensus       244 ~~v-------l~h~~d~~~~l~-el~rvlk~g~~~g  271 (319)
                      -..       ..++.. ..+++ .+.+.|+++|..-
T Consensus       183 D~~dp~~~~~~~~Lyt-~eF~~~~~~~~L~p~Gvlv  217 (336)
T PLN02823        183 DLADPVEGGPCYQLYT-KSFYERIVKPKLNPGGIFV  217 (336)
T ss_pred             cCCCccccCcchhhcc-HHHHHHHHHHhcCCCcEEE
Confidence            521       112212 24555 6777888777543

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.31  E-value=4.1e-06  Score=72.10  Aligned_cols=97  Identities=20%  Similarity=0.224  Sum_probs=68.9

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (319)
                      .++..|||.-||-|.|+..+++.+....|+++|++|.+++..+++++.++  ...++..+.+|..++.. .+.||-|++.
T Consensus       100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNk--v~~~i~~~~~D~~~~~~-~~~~drvim~  176 (200)
T PF02475_consen  100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNK--VENRIEVINGDAREFLP-EGKFDRVIMN  176 (200)
T ss_dssp             -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT---TTTEEEEES-GGG----TT-EEEEEE-
T ss_pred             CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcC--CCCeEEEEcCCHHHhcC-ccccCEEEEC
Confidence            56899999999999999999996656689999999999999999998764  34668899999988765 7899999885


Q ss_pred             ccccCCCCHHHHHHHHHHhhcCCC
Q 020988          245 AALHCWPSPSNAASVFSSSYSLLS  268 (319)
Q Consensus       245 ~vl~h~~d~~~~l~el~rvlk~g~  268 (319)
                      ..    +.-..++..+.++++.+|
T Consensus       177 lp----~~~~~fl~~~~~~~~~~g  196 (200)
T PF02475_consen  177 LP----ESSLEFLDAALSLLKEGG  196 (200)
T ss_dssp             -T----SSGGGGHHHHHHHEEEEE
T ss_pred             Ch----HHHHHHHHHHHHHhcCCc
Confidence            42    122345677777777664

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.31  E-value=8.5e-06  Score=71.62  Aligned_cols=85  Identities=14%  Similarity=0.117  Sum_probs=56.7

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeE-EEEcCCCCC-----CCCCCCc
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLA-LVRADVCRL-----PFASGFV  238 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~-~~~~d~~~l-----p~~~~~f  238 (319)
                      .++.+|||+|||+|.++..+++.| ..+|+|+|++++|+....+.        ..++. +...|+..+     +..-..+
T Consensus        74 ~~~~~vlDiG~gtG~~t~~l~~~g-a~~v~avD~~~~~l~~~l~~--------~~~v~~~~~~ni~~~~~~~~~~d~~~~  144 (228)
T TIGR00478        74 VKNKIVLDVGSSTGGFTDCALQKG-AKEVYGVDVGYNQLAEKLRQ--------DERVKVLERTNIRYVTPADIFPDFATF  144 (228)
T ss_pred             CCCCEEEEcccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHhc--------CCCeeEeecCCcccCCHhHcCCCceee
Confidence            467799999999999999999986 35899999999888762221        12222 233344332     2122367


Q ss_pred             cEEEecccccCCCCHHHHHHHHHHhhcC
Q 020988          239 DAVHAGAALHCWPSPSNAASVFSSSYSL  266 (319)
Q Consensus       239 D~V~~~~vl~h~~d~~~~l~el~rvlk~  266 (319)
                      |+++++..+        .+..+.+++++
T Consensus       145 DvsfiS~~~--------~l~~i~~~l~~  164 (228)
T TIGR00478       145 DVSFISLIS--------ILPELDLLLNP  164 (228)
T ss_pred             eEEEeehHh--------HHHHHHHHhCc
Confidence            877775443        25667788887

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.28  E-value=2.1e-06  Score=80.63  Aligned_cols=70  Identities=23%  Similarity=0.346  Sum_probs=56.0

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (319)
                      .+.+.+++... +.+|||++||+|.++..+++...  +|+|+|+++.+++.|++++..++   ..++.++.+|+.+
T Consensus       187 ~~~v~~~~~~~-~~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~---~~~v~~~~~d~~~  256 (353)
T TIGR02143       187 LEWACEVTQGS-KGDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANN---IDNVQIIRMSAEE  256 (353)
T ss_pred             HHHHHHHhhcC-CCcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcC---CCcEEEEEcCHHH
Confidence            44444554322 35799999999999998888764  99999999999999999987753   3479999999866

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.27  E-value=1.1e-06  Score=75.80  Aligned_cols=114  Identities=11%  Similarity=0.064  Sum_probs=84.4

Q ss_pred             hhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC--CCCCCCcc
Q 020988          162 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVD  239 (319)
Q Consensus       162 l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD  239 (319)
                      .....+.+|||...|-|+++....++|. ..|+-++-+++.++.|.-+-=..+. ...+++++.+|+.++  .|.|++||
T Consensus       130 V~~~~G~rVLDtC~GLGYtAi~a~~rGA-~~VitvEkdp~VLeLa~lNPwSr~l-~~~~i~iilGD~~e~V~~~~D~sfD  207 (287)
T COG2521         130 VKVKRGERVLDTCTGLGYTAIEALERGA-IHVITVEKDPNVLELAKLNPWSREL-FEIAIKIILGDAYEVVKDFDDESFD  207 (287)
T ss_pred             eccccCCEeeeeccCccHHHHHHHHcCC-cEEEEEeeCCCeEEeeccCCCCccc-cccccEEecccHHHHHhcCCccccc
Confidence            3456799999999999999999999974 6899999999999888754211111 123689999998775  47899999


Q ss_pred             EEEecc-ccc---CCCCHHHHHHHHHHhhcCCCeeEEEEeecc
Q 020988          240 AVHAGA-ALH---CWPSPSNAASVFSSSYSLLSICYLLQFRYT  278 (319)
Q Consensus       240 ~V~~~~-vl~---h~~d~~~~l~el~rvlk~g~~~g~~~~~~~  278 (319)
                      +|+--- -+.   ++ -.+++.+|++|+||+||.....+-.+.
T Consensus       208 aIiHDPPRfS~AgeL-YseefY~El~RiLkrgGrlFHYvG~Pg  249 (287)
T COG2521         208 AIIHDPPRFSLAGEL-YSEEFYRELYRILKRGGRLFHYVGNPG  249 (287)
T ss_pred             eEeeCCCccchhhhH-hHHHHHHHHHHHcCcCCcEEEEeCCCC
Confidence            997521 111   12 135678999999999998877766443

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.27  E-value=2.1e-06  Score=80.97  Aligned_cols=70  Identities=21%  Similarity=0.336  Sum_probs=56.2

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (319)
                      ++.+.+++... +.+|||++||+|.++..+++...  +|+|+|.++.+++.+++++..++   ..++.++.+|+.+
T Consensus       196 ~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~---~~~v~~~~~d~~~  265 (362)
T PRK05031        196 LEWALDATKGS-KGDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANG---IDNVQIIRMSAEE  265 (362)
T ss_pred             HHHHHHHhhcC-CCeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhC---CCcEEEEECCHHH
Confidence            44555554332 35799999999999998888755  99999999999999999987753   3489999999866

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.26  E-value=8.7e-06  Score=73.69  Aligned_cols=104  Identities=8%  Similarity=0.041  Sum_probs=80.8

Q ss_pred             CeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccC-CCCeEEEEcCCCCC-CCCCCCccEEEecc
Q 020988          168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTIL-TSNLALVRADVCRL-PFASGFVDAVHAGA  245 (319)
Q Consensus       168 ~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~-~~~i~~~~~d~~~l-p~~~~~fD~V~~~~  245 (319)
                      .+||-||.|.|.+++.+.+..+-.+++.+|+++.+++.+++.+....... .++++++..|..+. .-..++||+|++-.
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~  157 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS  157 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence            69999999999999999999877899999999999999999987653222 48899999998663 22234899999853


Q ss_pred             cccCCCCH------HHHHHHHHHhhcCCCeeEEE
Q 020988          246 ALHCWPSP------SNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       246 vl~h~~d~------~~~l~el~rvlk~g~~~g~~  273 (319)
                      .=. . .|      ..+.+.+++.|+++|..-..
T Consensus       158 tdp-~-gp~~~Lft~eFy~~~~~~L~~~Gi~v~q  189 (282)
T COG0421         158 TDP-V-GPAEALFTEEFYEGCRRALKEDGIFVAQ  189 (282)
T ss_pred             CCC-C-CcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence            322 1 22      57788899998888765544

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.26  E-value=2.3e-05  Score=70.65  Aligned_cols=118  Identities=12%  Similarity=0.191  Sum_probs=86.6

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (319)
                      .+.+.+.+...++..|||||+|+|.++..+.+.+.  +++++|+++.+++..++++..     ..++.++.+|+..+...
T Consensus        19 ~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~--~v~~vE~d~~~~~~L~~~~~~-----~~~~~vi~~D~l~~~~~   91 (262)
T PF00398_consen   19 ADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGK--RVIAVEIDPDLAKHLKERFAS-----NPNVEVINGDFLKWDLY   91 (262)
T ss_dssp             HHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSS--EEEEEESSHHHHHHHHHHCTT-----CSSEEEEES-TTTSCGG
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccC--cceeecCcHhHHHHHHHHhhh-----cccceeeecchhccccH
Confidence            45666677767899999999999999999999985  999999999999999998753     47999999999988755


Q ss_pred             C---CCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEeeccchhc
Q 020988          235 S---GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFRYTKIIE  282 (319)
Q Consensus       235 ~---~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~~~~~~~  282 (319)
                      +   ..-..|+++--. ++  ....+..+....+.|.....+++.......
T Consensus        92 ~~~~~~~~~vv~NlPy-~i--s~~il~~ll~~~~~g~~~~~l~vq~e~a~r  139 (262)
T PF00398_consen   92 DLLKNQPLLVVGNLPY-NI--SSPILRKLLELYRFGRVRMVLMVQKEVAER  139 (262)
T ss_dssp             GHCSSSEEEEEEEETG-TG--HHHHHHHHHHHGGGCEEEEEEEEEHHHHHH
T ss_pred             HhhcCCceEEEEEecc-cc--hHHHHHHHhhcccccccceEEEEehhhhhh
Confidence            3   344555554322 22  345666666666666666666665444443

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.18  E-value=4e-05  Score=63.85  Aligned_cols=113  Identities=18%  Similarity=0.234  Sum_probs=78.4

Q ss_pred             ccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEE
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH  242 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~  242 (319)
                      ......+||||||+|..+..+++. +++..+.++|+++.+++..++.++.+    ..++..++.|+..- +.+++.|+++
T Consensus        41 ~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n----~~~~~~V~tdl~~~-l~~~~VDvLv  115 (209)
T KOG3191|consen   41 GHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCN----RVHIDVVRTDLLSG-LRNESVDVLV  115 (209)
T ss_pred             hcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhc----CCccceeehhHHhh-hccCCccEEE
Confidence            344678999999999988888776 67788999999999999988877653    35677888887552 3348999998


Q ss_pred             ecccccCCCC---------------------HHHHHHHHHHhhcCCCeeEEEEeeccchh
Q 020988          243 AGAALHCWPS---------------------PSNAASVFSSSYSLLSICYLLQFRYTKII  281 (319)
Q Consensus       243 ~~~vl~h~~d---------------------~~~~l~el~rvlk~g~~~g~~~~~~~~~~  281 (319)
                      .+--..--++                     .++++.++-.+|.|-|.++++........
T Consensus       116 fNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~  175 (209)
T KOG3191|consen  116 FNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPK  175 (209)
T ss_pred             ECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHH
Confidence            8643221111                     12334444556677777777766444443

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.17  E-value=1.2e-05  Score=74.08  Aligned_cols=129  Identities=12%  Similarity=0.073  Sum_probs=83.8

Q ss_pred             CCCCCcHHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhh-------CCCCeEEEEeCCHHHHHHHHHHHhhcCccCC
Q 020988          146 SGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-------GTYSGVVALDFSENMLRQCYDFIKQDNTILT  218 (319)
Q Consensus       146 ~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-------g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~  218 (319)
                      ..++.|....+.+..++...++.+|+|-+||+|.|+..+.+.       ....+++|+|+++.++..|+-++.-.+. ..
T Consensus        26 G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~-~~  104 (311)
T PF02384_consen   26 GQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGI-DN  104 (311)
T ss_dssp             GGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTH-HC
T ss_pred             ceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcc-cc
Confidence            357889999999999998888889999999999999888763       2456899999999999998876543211 12


Q ss_pred             CCeEEEEcCCCCCCCC--CCCccEEEecccccCC--C------C------------H-HHHHHHHHHhhcCCCeeEEEEe
Q 020988          219 SNLALVRADVCRLPFA--SGFVDAVHAGAALHCW--P------S------------P-SNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       219 ~~i~~~~~d~~~lp~~--~~~fD~V~~~~vl~h~--~------d------------~-~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      .+..+..+|....+..  .+.||+|+++--+.-.  .      +            . ..++..+.+.|+++|..++++.
T Consensus       105 ~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp  184 (311)
T PF02384_consen  105 SNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP  184 (311)
T ss_dssp             BGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence            2345788887655432  4789999996422211  0      0            1 1356667777888777777776

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=98.17  E-value=3.2e-05  Score=61.73  Aligned_cols=101  Identities=23%  Similarity=0.268  Sum_probs=69.2

Q ss_pred             EEEEcCCcChHHHHHHhhCCC-CeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC--CCCCC-CCccEEEecc
Q 020988          170 LVDVSCGSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR--LPFAS-GFVDAVHAGA  245 (319)
Q Consensus       170 VLDiGcG~G~~~~~l~~~g~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~--lp~~~-~~fD~V~~~~  245 (319)
                      ++|+|||+|... .+...... ..++|+|+++.++..++......   ....+.+..+|...  +++.+ ..||++ ...
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~  126 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGA---GLGLVDFVVADALGGVLPFEDSASFDLV-ISL  126 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhc---CCCceEEEEeccccCCCCCCCCCceeEE-eee
Confidence            999999999965 33333221 37899999999998855543211   01116788888776  77776 489999 555


Q ss_pred             cccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          246 ALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       246 vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      ...|..++...+.++.++++++|.......
T Consensus       127 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  156 (257)
T COG0500         127 LVLHLLPPAKALRELLRVLKPGGRLVLSDL  156 (257)
T ss_pred             eehhcCCHHHHHHHHHHhcCCCcEEEEEec
Confidence            444443478889999999999665555444

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.16  E-value=1.2e-05  Score=68.51  Aligned_cols=125  Identities=14%  Similarity=0.162  Sum_probs=81.4

Q ss_pred             cHHHHHHHHHHhhc--cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCC
Q 020988          151 PDEEFKMAQEYFKS--AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV  228 (319)
Q Consensus       151 ~~~~~~~l~~~l~~--~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~  228 (319)
                      .+...+.+...+..  .++.++||+-||+|.++.+++.+|. .+|+.+|.++..++..+++++..+  ...++.++..|+
T Consensus        25 ~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA-~~v~fVE~~~~a~~~i~~N~~~l~--~~~~~~v~~~d~  101 (183)
T PF03602_consen   25 TDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGA-KSVVFVEKNRKAIKIIKKNLEKLG--LEDKIRVIKGDA  101 (183)
T ss_dssp             SHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT---GGGEEEEESSH
T ss_pred             cHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCC-CeEEEEECCHHHHHHHHHHHHHhC--CCcceeeeccCH
Confidence            33344555555554  4789999999999999999999984 699999999999999999998753  223588888886


Q ss_pred             CC-CC---CCCCCccEEEecccccCCCC-HHHHHHHHHHhhcCCCeeEEEEeeccch
Q 020988          229 CR-LP---FASGFVDAVHAGAALHCWPS-PSNAASVFSSSYSLLSICYLLQFRYTKI  280 (319)
Q Consensus       229 ~~-lp---~~~~~fD~V~~~~vl~h~~d-~~~~l~el~rvlk~g~~~g~~~~~~~~~  280 (319)
                      .. ++   ....+||+|++---...- . ....++.+.+ ...+...++++.+...-
T Consensus       102 ~~~l~~~~~~~~~fDiIflDPPY~~~-~~~~~~l~~l~~-~~~l~~~~~ii~E~~~~  156 (183)
T PF03602_consen  102 FKFLLKLAKKGEKFDIIFLDPPYAKG-LYYEELLELLAE-NNLLNEDGLIIIEHSKK  156 (183)
T ss_dssp             HHHHHHHHHCTS-EEEEEE--STTSC-HHHHHHHHHHHH-TTSEEEEEEEEEEEETT
T ss_pred             HHHHHhhcccCCCceEEEECCCcccc-hHHHHHHHHHHH-CCCCCCCEEEEEEecCC
Confidence            43 21   246899999986433322 2 1344444432 24567788888865443

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.15  E-value=5.5e-05  Score=67.94  Aligned_cols=104  Identities=13%  Similarity=0.081  Sum_probs=71.8

Q ss_pred             CCeEEEEcCCcCh----HHHHHHhhC-----CCCeEEEEeCCHHHHHHHHHHH-----h--h-----------cCc----
Q 020988          167 GGLLVDVSCGSGL----FSRKFAKSG-----TYSGVVALDFSENMLRQCYDFI-----K--Q-----------DNT----  215 (319)
Q Consensus       167 ~~~VLDiGcG~G~----~~~~l~~~g-----~~~~v~gvD~s~~~l~~a~~~~-----~--~-----------~~~----  215 (319)
                      .-+|+-+||+||.    ++..+.+.+     +..+|+|+|+|..+++.|++-.     .  .           .+.    
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y  176 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY  176 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence            5689999999995    444444444     2578999999999999998411     0  0           000    


Q ss_pred             ----cCCCCeEEEEcCCCCCCCCCCCccEEEecccccCCCCHH--HHHHHHHHhhcCCCee
Q 020988          216 ----ILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPS--NAASVFSSSYSLLSIC  270 (319)
Q Consensus       216 ----~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~--~~l~el~rvlk~g~~~  270 (319)
                          .....|.|.+.|+..-++..+.||+|+|-+||-++..+.  ++++.++..|++||.+
T Consensus       177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~L  237 (268)
T COG1352         177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLL  237 (268)
T ss_pred             EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEE
Confidence                011357777888877653457899999999999995443  5566667777776643

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.12  E-value=2.8e-05  Score=66.08  Aligned_cols=92  Identities=13%  Similarity=0.084  Sum_probs=68.7

Q ss_pred             eEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEeccccc
Q 020988          169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALH  248 (319)
Q Consensus       169 ~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~  248 (319)
                      +++|||+|.|.-+..++-..|..+++.+|....-+...+.-....   ...|++++.+.+++ +....+||+|++-.+  
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L---~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv--  124 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVREL---GLSNVEVINGRAEE-PEYRESFDVVTARAV--  124 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHH---T-SSEEEEES-HHH-TTTTT-EEEEEEESS--
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHh---CCCCEEEEEeeecc-cccCCCccEEEeehh--
Confidence            899999999999988888888889999999998877777766655   35689999999988 445689999999754  


Q ss_pred             CCCCHHHHHHHHHHhhcCCC
Q 020988          249 CWPSPSNAASVFSSSYSLLS  268 (319)
Q Consensus       249 h~~d~~~~l~el~rvlk~g~  268 (319)
                        ......++....+++++|
T Consensus       125 --~~l~~l~~~~~~~l~~~G  142 (184)
T PF02527_consen  125 --APLDKLLELARPLLKPGG  142 (184)
T ss_dssp             --SSHHHHHHHHGGGEEEEE
T ss_pred             --cCHHHHHHHHHHhcCCCC
Confidence              345555555555655443

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=98.11  E-value=1.9e-05  Score=64.22  Aligned_cols=82  Identities=21%  Similarity=0.246  Sum_probs=61.0

Q ss_pred             cCCCeEEEEcCCcChHHHHHHh-----hCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCcc
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAK-----SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVD  239 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~-----~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD  239 (319)
                      .+...|+|+|||.|+++..++.     . ++.+|+|+|.++..++.+.++.+..+.....++.+..++....+. ....+
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  101 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPD  101 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCe
Confidence            6778999999999999999988     4 667999999999999999988876532233566666666554332 45667


Q ss_pred             EEEeccccc
Q 020988          240 AVHAGAALH  248 (319)
Q Consensus       240 ~V~~~~vl~  248 (319)
                      +++..|+=-
T Consensus       102 ~~vgLHaCG  110 (141)
T PF13679_consen  102 ILVGLHACG  110 (141)
T ss_pred             EEEEeeccc
Confidence            777654433

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.11  E-value=1.3e-05  Score=76.88  Aligned_cols=85  Identities=21%  Similarity=0.306  Sum_probs=72.6

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (319)
Q Consensus       154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (319)
                      .+..+.+++...++.+|||+=||.|.|+..+++...  +|+|+|+++++++.|+++++.++   ..|+.|+.+++++...
T Consensus       281 l~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~--~V~gvEi~~~aV~~A~~NA~~n~---i~N~~f~~~~ae~~~~  355 (432)
T COG2265         281 LYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVK--KVHGVEISPEAVEAAQENAAANG---IDNVEFIAGDAEEFTP  355 (432)
T ss_pred             HHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCC--EEEEEecCHHHHHHHHHHHHHcC---CCcEEEEeCCHHHHhh
Confidence            466677777777889999999999999999998766  99999999999999999998874   5679999999988653


Q ss_pred             C---CCCccEEEe
Q 020988          234 A---SGFVDAVHA  243 (319)
Q Consensus       234 ~---~~~fD~V~~  243 (319)
                      .   ...+|+|+.
T Consensus       356 ~~~~~~~~d~Vvv  368 (432)
T COG2265         356 AWWEGYKPDVVVV  368 (432)
T ss_pred             hccccCCCCEEEE
Confidence            3   357899987

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.09  E-value=4.8e-06  Score=69.04  Aligned_cols=72  Identities=22%  Similarity=0.308  Sum_probs=54.1

Q ss_pred             eEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC--CCCCC-ccEEEec
Q 020988          169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGF-VDAVHAG  244 (319)
Q Consensus       169 ~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~-fD~V~~~  244 (319)
                      .|+|+.||.|..+.++++.+.  +|+++|+++..++.|+.+.+-.|  ...+++++.+|+.++.  +.... +|+|+++
T Consensus         2 ~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vYG--v~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS   76 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVYG--VADNIDFICGDFFELLKRLKSNKIFDVVFLS   76 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT---GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred             EEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence            699999999999999999876  99999999999999999988753  3568999999997752  22222 8999974

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PRK11827 hypothetical protein; Provisional

Probab=98.09  E-value=1.5e-06  Score=59.01  Aligned_cols=45  Identities=16%  Similarity=0.383  Sum_probs=37.1

Q ss_pred             cCeeeccCCCccccccCCCCCcccceecCceeeCccCCccccCCceeeeccccC
Q 020988           58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISG  111 (319)
Q Consensus        58 ~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~~~g~~~~~~~~~  111 (319)
                      .++++||+|+++|.....         ...+.|..|+..|++++|++.++.++.
T Consensus         6 LeILaCP~ckg~L~~~~~---------~~~Lic~~~~laYPI~dgIPVlL~deA   50 (60)
T PRK11827          6 LEIIACPVCNGKLWYNQE---------KQELICKLDNLAFPLRDGIPVLLETEA   50 (60)
T ss_pred             HhheECCCCCCcCeEcCC---------CCeEECCccCeeccccCCccccCHHHh
Confidence            468999999999976542         256899999999999999999986543

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.08  E-value=1.6e-05  Score=74.73  Aligned_cols=71  Identities=24%  Similarity=0.440  Sum_probs=54.3

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC
Q 020988          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (319)
Q Consensus       154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (319)
                      .++.+.+++...++ .|||+-||.|.++..+++...  +|+|+|.++.+++.|+++++.+   ...|++|+.+++++
T Consensus       185 l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~--~V~gvE~~~~av~~A~~Na~~N---~i~n~~f~~~~~~~  255 (352)
T PF05958_consen  185 LYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAK--KVIGVEIVEEAVEDARENAKLN---GIDNVEFIRGDAED  255 (352)
T ss_dssp             HHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSS--EEEEEES-HHHHHHHHHHHHHT---T--SEEEEE--SHH
T ss_pred             HHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCC--eEEEeeCCHHHHHHHHHHHHHc---CCCcceEEEeeccc
Confidence            35666677765555 899999999999999999876  9999999999999999999886   35789999887654

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.08  E-value=0.00014  Score=67.10  Aligned_cols=105  Identities=13%  Similarity=0.066  Sum_probs=68.5

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhh----CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEE--EEcCCCC----CCC-
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLAL--VRADVCR----LPF-  233 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~----g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~--~~~d~~~----lp~-  233 (319)
                      .++..|+|+|||+|.-+..+.+.    +....++++|+|.++++.+.+++...   ..+.+.+  +++|+.+    ++- 
T Consensus        75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~---~~p~l~v~~l~gdy~~~l~~l~~~  151 (319)
T TIGR03439        75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLG---NFSHVRCAGLLGTYDDGLAWLKRP  151 (319)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhc---cCCCeEEEEEEecHHHHHhhcccc
Confidence            35668999999999876655544    33457999999999999999998722   2455655  7888755    221 


Q ss_pred             -CCCCccEEEec-ccccCCCCHH--HHHHHHHH-hhcCCCeeEEEEe
Q 020988          234 -ASGFVDAVHAG-AALHCWPSPS--NAASVFSS-SYSLLSICYLLQF  275 (319)
Q Consensus       234 -~~~~fD~V~~~-~vl~h~~d~~--~~l~el~r-vlk~g~~~g~~~~  275 (319)
                       ......+|+.. .+|.+++..+  .+++++++ .++++   +.+++
T Consensus       152 ~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~---d~lLi  195 (319)
T TIGR03439       152 ENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPS---DSFLI  195 (319)
T ss_pred             cccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCC---CEEEE
Confidence             12335666654 4888884433  34455555 55554   44544

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=98.07  E-value=1.9e-05  Score=67.87  Aligned_cols=87  Identities=17%  Similarity=0.174  Sum_probs=66.3

Q ss_pred             CeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC---CCCccEEEec
Q 020988          168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA---SGFVDAVHAG  244 (319)
Q Consensus       168 ~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~---~~~fD~V~~~  244 (319)
                      -++|||||=+..+...  ..+. ..|+.||+++.                  .-.+.+.|+.+.|++   ++.||+|.++
T Consensus        53 lrlLEVGals~~N~~s--~~~~-fdvt~IDLns~------------------~~~I~qqDFm~rplp~~~~e~FdvIs~S  111 (219)
T PF11968_consen   53 LRLLEVGALSTDNACS--TSGW-FDVTRIDLNSQ------------------HPGILQQDFMERPLPKNESEKFDVISLS  111 (219)
T ss_pred             ceEEeecccCCCCccc--ccCc-eeeEEeecCCC------------------CCCceeeccccCCCCCCcccceeEEEEE
Confidence            5899999986655432  2222 36999999762                  334678899887763   6899999999


Q ss_pred             ccccCCCCHH---HHHHHHHHhhcCCCe-----eEEEEe
Q 020988          245 AALHCWPSPS---NAASVFSSSYSLLSI-----CYLLQF  275 (319)
Q Consensus       245 ~vl~h~~d~~---~~l~el~rvlk~g~~-----~g~~~~  275 (319)
                      .||+.+|+|.   ++++.+++.|++.|.     +.+++.
T Consensus       112 LVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP  150 (219)
T PF11968_consen  112 LVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLP  150 (219)
T ss_pred             EEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeC
Confidence            9999999987   567778888999888     555555

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.07  E-value=3.8e-05  Score=69.63  Aligned_cols=104  Identities=19%  Similarity=0.170  Sum_probs=64.8

Q ss_pred             HHHHhhccCCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCC--CCCCC
Q 020988          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC--RLPFA  234 (319)
Q Consensus       158 l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~--~lp~~  234 (319)
                      +...++.-.+.+|||+|+|.|..+..+.+..+ ..+++++|.|+.|++.++..+....  ......+ ..+..  ..++ 
T Consensus        25 l~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~--~~~~~~~-~~~~~~~~~~~-  100 (274)
T PF09243_consen   25 LRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGP--NNRNAEW-RRVLYRDFLPF-  100 (274)
T ss_pred             HHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccc--ccccchh-hhhhhcccccC-
Confidence            33334445678999999999987766665432 3579999999999999998765421  0111111 11111  1222 


Q ss_pred             CCCccEEEecccccCCCCHHHHHHHHHHhhcCC
Q 020988          235 SGFVDAVHAGAALHCWPSPSNAASVFSSSYSLL  267 (319)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g  267 (319)
                       ...|+|++.++|..+++ ....+-+.++.+..
T Consensus       101 -~~~DLvi~s~~L~EL~~-~~r~~lv~~LW~~~  131 (274)
T PF09243_consen  101 -PPDDLVIASYVLNELPS-AARAELVRSLWNKT  131 (274)
T ss_pred             -CCCcEEEEehhhhcCCc-hHHHHHHHHHHHhc
Confidence             23499999999999988 44344444443333

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>COG2835 Uncharacterized conserved protein [Function unknown]

Probab=98.06  E-value=2.5e-06  Score=57.32  Aligned_cols=44  Identities=23%  Similarity=0.595  Sum_probs=37.7

Q ss_pred             cCeeeccCCCccccccCCCCCcccceecCceeeCccCCccccCCceeeecccc
Q 020988           58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVIS  110 (319)
Q Consensus        58 ~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~~~g~~~~~~~~  110 (319)
                      .++++||+|.++|.....         .+.+.|+.|+..|++.+|+..++.++
T Consensus         6 LeiLaCP~~kg~L~~~~~---------~~~L~c~~~~~aYpI~dGIPvlL~~e   49 (60)
T COG2835           6 LEILACPVCKGPLVYDEE---------KQELICPRCKLAYPIRDGIPVLLPDE   49 (60)
T ss_pred             heeeeccCcCCcceEecc---------CCEEEecccCceeecccCccccCchh
Confidence            478999999999877653         35789999999999999999998654

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.06  E-value=5.6e-05  Score=73.31  Aligned_cols=84  Identities=17%  Similarity=0.143  Sum_probs=66.4

Q ss_pred             HHHHHh--hccCCCeEEEEcCCcChHHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-
Q 020988          157 MAQEYF--KSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-  232 (319)
Q Consensus       157 ~l~~~l--~~~~~~~VLDiGcG~G~~~~~l~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-  232 (319)
                      .....+  ...++.+|||+++|.|.-+.+++... ....+++.|+++.-++..+++++..+   ..++.+...|...++ 
T Consensus       102 l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G---~~nv~v~~~D~~~~~~  178 (470)
T PRK11933        102 LPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCG---VSNVALTHFDGRVFGA  178 (470)
T ss_pred             HHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCeEEEEeCchhhhhh
Confidence            334445  56789999999999999998888874 23589999999999999999998863   467888888887653 


Q ss_pred             CCCCCccEEEe
Q 020988          233 FASGFVDAVHA  243 (319)
Q Consensus       233 ~~~~~fD~V~~  243 (319)
                      ...+.||.|+.
T Consensus       179 ~~~~~fD~ILv  189 (470)
T PRK11933        179 ALPETFDAILL  189 (470)
T ss_pred             hchhhcCeEEE
Confidence            22467999993

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.04  E-value=2.2e-05  Score=67.85  Aligned_cols=115  Identities=10%  Similarity=0.097  Sum_probs=66.0

Q ss_pred             HHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcC------ccCCCCeEEEEcCCCC
Q 020988          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN------TILTSNLALVRADVCR  230 (319)
Q Consensus       157 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~------~~~~~~i~~~~~d~~~  230 (319)
                      .+.+.+...++..++|||||.|....+++-.....+++|||+.+...+.|++......      ......+.+..+|+.+
T Consensus        33 ~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~  112 (205)
T PF08123_consen   33 KILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLD  112 (205)
T ss_dssp             HHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTT
T ss_pred             HHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccc
Confidence            3445566778899999999999998877766545569999999998888765332210      0124567888999876


Q ss_pred             CCCCC---CCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          231 LPFAS---GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       231 lp~~~---~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      .++..   ...|+|++++...   ++ .+...+.+.+..++++..++-
T Consensus       113 ~~~~~~~~s~AdvVf~Nn~~F---~~-~l~~~L~~~~~~lk~G~~IIs  156 (205)
T PF08123_consen  113 PDFVKDIWSDADVVFVNNTCF---DP-DLNLALAELLLELKPGARIIS  156 (205)
T ss_dssp             HHHHHHHGHC-SEEEE--TTT----H-HHHHHHHHHHTTS-TT-EEEE
T ss_pred             cHhHhhhhcCCCEEEEecccc---CH-HHHHHHHHHHhcCCCCCEEEE
Confidence            54211   3469999987642   33 345556666666666666654

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=98.02  E-value=3.2e-05  Score=70.87  Aligned_cols=95  Identities=15%  Similarity=0.203  Sum_probs=74.5

Q ss_pred             CeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 020988          168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAAL  247 (319)
Q Consensus       168 ~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl  247 (319)
                      ...+|+|.|.|+.+..+....+  ++-+++++...+-.++..+.       ++|..+-+|+.+- .|  +-|+|++..+|
T Consensus       179 ~~avDvGgGiG~v~k~ll~~fp--~ik~infdlp~v~~~a~~~~-------~gV~~v~gdmfq~-~P--~~daI~mkWiL  246 (342)
T KOG3178|consen  179 NVAVDVGGGIGRVLKNLLSKYP--HIKGINFDLPFVLAAAPYLA-------PGVEHVAGDMFQD-TP--KGDAIWMKWIL  246 (342)
T ss_pred             ceEEEcCCcHhHHHHHHHHhCC--CCceeecCHHHHHhhhhhhc-------CCcceeccccccc-CC--CcCeEEEEeec
Confidence            6899999999999999999777  79999999988877777642       4688888888664 33  34699999999


Q ss_pred             cCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          248 HCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       248 ~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      ||+.| +..++-+.|+.+.+.++|.++.
T Consensus       247 hdwtD-edcvkiLknC~~sL~~~GkIiv  273 (342)
T KOG3178|consen  247 HDWTD-EDCVKILKNCKKSLPPGGKIIV  273 (342)
T ss_pred             ccCCh-HHHHHHHHHHHHhCCCCCEEEE
Confidence            99977 4456666666666666666665

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=98.02  E-value=9.9e-05  Score=65.26  Aligned_cols=107  Identities=20%  Similarity=0.305  Sum_probs=85.8

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (319)
                      ..++..++...||.+|+|-|.|+|.++..+++. +|..+++-.|+.+.-.+.|++.++..+  ...++++..-|+...-|
T Consensus        94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg--i~~~vt~~hrDVc~~GF  171 (314)
T KOG2915|consen   94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHG--IGDNVTVTHRDVCGSGF  171 (314)
T ss_pred             HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC--CCcceEEEEeecccCCc
Confidence            356777888899999999999999999999888 577799999999999999999998875  56889999988877544


Q ss_pred             --CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCC
Q 020988          234 --ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLS  268 (319)
Q Consensus       234 --~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~  268 (319)
                        .+..+|+|+.     -+|.|..++-.+..++|..|
T Consensus       172 ~~ks~~aDaVFL-----DlPaPw~AiPha~~~lk~~g  203 (314)
T KOG2915|consen  172 LIKSLKADAVFL-----DLPAPWEAIPHAAKILKDEG  203 (314)
T ss_pred             cccccccceEEE-----cCCChhhhhhhhHHHhhhcC
Confidence              4678999977     35666666655666655554

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.01  E-value=1.5e-05  Score=66.56  Aligned_cols=107  Identities=17%  Similarity=0.142  Sum_probs=75.8

Q ss_pred             HhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccE
Q 020988          161 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA  240 (319)
Q Consensus       161 ~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~  240 (319)
                      .+.....+.+.|+|+|+|.++..+++...  +|++++.+|...+.|.+++.-.   ...++.++.+|+.+..|  +..|+
T Consensus        27 ai~~va~d~~~DLGaGsGiLs~~Aa~~A~--rViAiE~dPk~a~~a~eN~~v~---g~~n~evv~gDA~~y~f--e~ADv   99 (252)
T COG4076          27 AIAEVAEDTFADLGAGSGILSVVAAHAAE--RVIAIEKDPKRARLAEENLHVP---GDVNWEVVVGDARDYDF--ENADV   99 (252)
T ss_pred             HHHHHhhhceeeccCCcchHHHHHHhhhc--eEEEEecCcHHHHHhhhcCCCC---CCcceEEEecccccccc--cccce
Confidence            33334458999999999999988887754  9999999999999999986443   36789999999999988  46799


Q ss_pred             EEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          241 VHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       241 V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      |+|-. |.-.-=.+..+..+.++++-++..+.++.
T Consensus       100 vicEm-lDTaLi~E~qVpV~n~vleFLr~d~tiiP  133 (252)
T COG4076         100 VICEM-LDTALIEEKQVPVINAVLEFLRYDPTIIP  133 (252)
T ss_pred             eHHHH-hhHHhhcccccHHHHHHHHHhhcCCcccc
Confidence            98732 11100012234456666665555555554

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=97.98  E-value=0.00011  Score=70.20  Aligned_cols=103  Identities=16%  Similarity=0.157  Sum_probs=85.7

Q ss_pred             CeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 020988          168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAAL  247 (319)
Q Consensus       168 ~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl  247 (319)
                      .++|.+|||+-.+...+.+.|. ..++-+|+|+-.++....+...    ..+-+.+...|+..+.|++++||+|+.-+.+
T Consensus        50 ~~~l~lGCGNS~l~e~ly~~G~-~dI~~iD~S~V~V~~m~~~~~~----~~~~~~~~~~d~~~l~fedESFdiVIdkGtl  124 (482)
T KOG2352|consen   50 FKILQLGCGNSELSEHLYKNGF-EDITNIDSSSVVVAAMQVRNAK----ERPEMQMVEMDMDQLVFEDESFDIVIDKGTL  124 (482)
T ss_pred             ceeEeecCCCCHHHHHHHhcCC-CCceeccccHHHHHHHHhcccc----CCcceEEEEecchhccCCCcceeEEEecCcc
Confidence            3999999999999999998874 6899999999998888776532    2567889999999999999999999999999


Q ss_pred             cCCCCHH----------HHHHHHHHhhcCCCeeEEEEe
Q 020988          248 HCWPSPS----------NAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       248 ~h~~d~~----------~~l~el~rvlk~g~~~g~~~~  275 (319)
                      +++-.++          ..+.++.|++++++..-.+.+
T Consensus       125 Dal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl  162 (482)
T KOG2352|consen  125 DALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL  162 (482)
T ss_pred             ccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence            8875332          336788999999988766655

>PRK00536 speE spermidine synthase; Provisional

Probab=97.95  E-value=9.6e-05  Score=66.22  Aligned_cols=98  Identities=8%  Similarity=-0.033  Sum_probs=72.7

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcC-ccCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-TILTSNLALVRADVCRLPFASGFVDAVHA  243 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~-~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (319)
                      ..+.+||=||.|.|..++++.+.-  .+|+-+|+++.+++.+++.+.... ....++++++.. +.+  -..++||+|++
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVIIv  145 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKYD--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLIIC  145 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCcC--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEEEE
Confidence            456899999999999999999974  399999999999999999665422 123567777652 221  12368999997


Q ss_pred             cccccCCCCHHHHHHHHHHhhcCCCeeEE
Q 020988          244 GAALHCWPSPSNAASVFSSSYSLLSICYL  272 (319)
Q Consensus       244 ~~vl~h~~d~~~~l~el~rvlk~g~~~g~  272 (319)
                      -..     .+....+.+++.|+++|..-.
T Consensus       146 Ds~-----~~~~fy~~~~~~L~~~Gi~v~  169 (262)
T PRK00536        146 LQE-----PDIHKIDGLKRMLKEDGVFIS  169 (262)
T ss_pred             cCC-----CChHHHHHHHHhcCCCcEEEE
Confidence            632     335667888899888876544

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=97.93  E-value=0.0003  Score=59.44  Aligned_cols=126  Identities=16%  Similarity=0.133  Sum_probs=85.7

Q ss_pred             cHHHHHHHHHHhhc--cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCC
Q 020988          151 PDEEFKMAQEYFKS--AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV  228 (319)
Q Consensus       151 ~~~~~~~l~~~l~~--~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~  228 (319)
                      .+...+.+..++..  -.+.++||+=+|+|.++.+++.+|. ..++.||.+...+...+++++..+  ...+..++..|+
T Consensus        26 ~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N~~~l~--~~~~~~~~~~da  102 (187)
T COG0742          26 TDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGA-ARVVFVEKDRKAVKILKENLKALG--LEGEARVLRNDA  102 (187)
T ss_pred             chHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHhC--CccceEEEeecH
Confidence            33344556666654  6789999999999999999999974 689999999999999999987742  236788888888


Q ss_pred             CCC-C-CC-CCCccEEEecccccC-CCCHHHHHHHHHHhhcCCCeeEEEEeeccch
Q 020988          229 CRL-P-FA-SGFVDAVHAGAALHC-WPSPSNAASVFSSSYSLLSICYLLQFRYTKI  280 (319)
Q Consensus       229 ~~l-p-~~-~~~fD~V~~~~vl~h-~~d~~~~l~el~rvlk~g~~~g~~~~~~~~~  280 (319)
                      ... + .. .++||+|++---++. +.++...+.. ..-.+.+.++++++++...-
T Consensus       103 ~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~-~~~~~~L~~~~~iv~E~~~~  157 (187)
T COG0742         103 LRALKQLGTREPFDLVFLDPPYAKGLLDKELALLL-LEENGWLKPGALIVVEHDKD  157 (187)
T ss_pred             HHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHH-HHhcCCcCCCcEEEEEeCCC
Confidence            743 1 22 235999998655441 1111221111 11334567777777765544

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=97.93  E-value=3.4e-05  Score=68.77  Aligned_cols=110  Identities=7%  Similarity=0.073  Sum_probs=75.7

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCc-cCCCCeEEEEcCCCCC-CCCCC-CccEE
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT-ILTSNLALVRADVCRL-PFASG-FVDAV  241 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~-~~~~~i~~~~~d~~~l-p~~~~-~fD~V  241 (319)
                      ..+.+||=||.|.|..++.+.+..+..+++.+|+++.+++.|++.+..... ...++++++.+|.... .-..+ +||+|
T Consensus        75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI  154 (246)
T PF01564_consen   75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI  154 (246)
T ss_dssp             SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred             CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence            468899999999999999999876557999999999999999998765311 1357899999998552 22233 89999


Q ss_pred             EecccccCCCC----HHHHHHHHHHhhcCCCeeEEEE
Q 020988          242 HAGAALHCWPS----PSNAASVFSSSYSLLSICYLLQ  274 (319)
Q Consensus       242 ~~~~vl~h~~d----~~~~l~el~rvlk~g~~~g~~~  274 (319)
                      +.-..-...+.    ....++.+++.|+++|......
T Consensus       155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~  191 (246)
T PF01564_consen  155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA  191 (246)
T ss_dssp             EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence            98432211111    2466777888877766554443

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=97.92  E-value=0.00014  Score=72.00  Aligned_cols=96  Identities=13%  Similarity=0.181  Sum_probs=65.4

Q ss_pred             CCCCcHHHHHHHHHHhhcc-------CCCeEEEEcCCcChHHHHHHhhCC--------CCeEEEEeCCHHHHHHHHHHHh
Q 020988          147 GFPGPDEEFKMAQEYFKSA-------QGGLLVDVSCGSGLFSRKFAKSGT--------YSGVVALDFSENMLRQCYDFIK  211 (319)
Q Consensus       147 ~~~~~~~~~~~l~~~l~~~-------~~~~VLDiGcG~G~~~~~l~~~g~--------~~~v~gvD~s~~~l~~a~~~~~  211 (319)
                      .|+.|....+.|.+.+...       ...+|||.|||+|.++..+.+...        ..+++|+|+++..+..++.++.
T Consensus         5 qfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~   84 (524)
T TIGR02987         5 TFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLG   84 (524)
T ss_pred             ccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHh
Confidence            3556666666666655321       346899999999999988887542        2578999999999999998876


Q ss_pred             hcCccCCCCeEEEEcCCCCCC-----CCCCCccEEEecc
Q 020988          212 QDNTILTSNLALVRADVCRLP-----FASGFVDAVHAGA  245 (319)
Q Consensus       212 ~~~~~~~~~i~~~~~d~~~lp-----~~~~~fD~V~~~~  245 (319)
                      ..+   ...+.+...|.....     -..+.||+|+.+-
T Consensus        85 ~~~---~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNP  120 (524)
T TIGR02987        85 EFA---LLEINVINFNSLSYVLLNIESYLDLFDIVITNP  120 (524)
T ss_pred             hcC---CCCceeeecccccccccccccccCcccEEEeCC
Confidence            542   123445555533211     1125799999975

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=97.91  E-value=0.00015  Score=65.03  Aligned_cols=101  Identities=18%  Similarity=0.084  Sum_probs=79.0

Q ss_pred             CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhh---cCc---------------------------
Q 020988          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ---DNT---------------------------  215 (319)
Q Consensus       166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~---~~~---------------------------  215 (319)
                      ...+||--|||.|+++..++..|.  .+.|.|.|--|+-..+=-+..   .+.                           
T Consensus        56 ~~~~VLVPGsGLGRLa~Eia~~G~--~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD  133 (270)
T PF07942_consen   56 SKIRVLVPGSGLGRLAWEIAKLGY--AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD  133 (270)
T ss_pred             CccEEEEcCCCcchHHHHHhhccc--eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence            457899999999999999999998  999999999986544322211   000                           


Q ss_pred             -------cCCCCeEEEEcCCCCCCCCC---CCccEEEecccccCCCCHHHHHHHHHHhhcCCC
Q 020988          216 -------ILTSNLALVRADVCRLPFAS---GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLS  268 (319)
Q Consensus       216 -------~~~~~i~~~~~d~~~lp~~~---~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~  268 (319)
                             ....++....||+.++...+   ++||+|+..+.|.-.++.-+.++.+.++|||||
T Consensus       134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG  196 (270)
T PF07942_consen  134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGG  196 (270)
T ss_pred             cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCC
Confidence                   11246777888888765444   799999999888888888899999999999998

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=97.86  E-value=0.00016  Score=66.88  Aligned_cols=106  Identities=19%  Similarity=0.218  Sum_probs=81.3

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (319)
                      ..+....  .+|.+|||.=+|-|.|+..+++.+.. .|+++|++|.+++..+++++-++  ....+..+.+|..+.+..-
T Consensus       180 ~Rva~~v--~~GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~LN~--v~~~v~~i~gD~rev~~~~  254 (341)
T COG2520         180 ARVAELV--KEGETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRLNK--VEGRVEPILGDAREVAPEL  254 (341)
T ss_pred             HHHHhhh--cCCCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHhcC--ccceeeEEeccHHHhhhcc
Confidence            3444443  34899999999999999999999863 39999999999999999998764  2334889999999987655


Q ss_pred             CCccEEEecccccCCCCHHHHHHHHHHhhcCCCee
Q 020988          236 GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSIC  270 (319)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~  270 (319)
                      +.+|-|++...    .+....+....+.++.++..
T Consensus       255 ~~aDrIim~~p----~~a~~fl~~A~~~~k~~g~i  285 (341)
T COG2520         255 GVADRIIMGLP----KSAHEFLPLALELLKDGGII  285 (341)
T ss_pred             ccCCEEEeCCC----CcchhhHHHHHHHhhcCcEE
Confidence            88999998743    23345566677777775543

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=97.82  E-value=0.00011  Score=69.44  Aligned_cols=106  Identities=13%  Similarity=0.062  Sum_probs=75.6

Q ss_pred             CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC----CCCCCCccEE
Q 020988          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PFASGFVDAV  241 (319)
Q Consensus       166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l----p~~~~~fD~V  241 (319)
                      .|++|||+=|=||.++..++..|. .+|++||.|...++.|+++++-++. ....+.++++|+.+.    .-...+||+|
T Consensus       217 ~GkrvLNlFsYTGgfSv~Aa~gGA-~~vt~VD~S~~al~~a~~N~~LNg~-~~~~~~~i~~Dvf~~l~~~~~~g~~fDlI  294 (393)
T COG1092         217 AGKRVLNLFSYTGGFSVHAALGGA-SEVTSVDLSKRALEWARENAELNGL-DGDRHRFIVGDVFKWLRKAERRGEKFDLI  294 (393)
T ss_pred             cCCeEEEecccCcHHHHHHHhcCC-CceEEEeccHHHHHHHHHHHHhcCC-CccceeeehhhHHHHHHHHHhcCCcccEE
Confidence            389999999999999999988764 6999999999999999999987642 134578999998663    2234599999


Q ss_pred             Eecc-cccC--------CCCHHHHHHHHHHhhcCCCeeEEE
Q 020988          242 HAGA-ALHC--------WPSPSNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       242 ~~~~-vl~h--------~~d~~~~l~el~rvlk~g~~~g~~  273 (319)
                      ++-- ++--        ..|-..++....++|+|+|.+...
T Consensus       295 ilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~  335 (393)
T COG1092         295 ILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTS  335 (393)
T ss_pred             EECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            9832 1111        112224455556666666655444

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.81  E-value=7.8e-05  Score=60.38  Aligned_cols=59  Identities=25%  Similarity=0.318  Sum_probs=49.1

Q ss_pred             eEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC
Q 020988          169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (319)
Q Consensus       169 ~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (319)
                      ++||||||.|.++..+++.++..+++++|+++.+.+.++++++.++   ..++.++...+.+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~---~~~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNN---LPNVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcC---CCcEEEEEeeeeC
Confidence            4899999999999999999886689999999999999999887642   3457777766543

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=97.80  E-value=0.00021  Score=67.44  Aligned_cols=100  Identities=10%  Similarity=0.121  Sum_probs=76.0

Q ss_pred             CCeEEEEcCCcChHHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-CCCCCccEEEec
Q 020988          167 GGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDAVHAG  244 (319)
Q Consensus       167 ~~~VLDiGcG~G~~~~~l~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~V~~~  244 (319)
                      +.+|||+.||+|..+..++... ....|+++|+++.+++.++++++.++   ..++.++..|+..+- .....||+|..-
T Consensus        45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~---~~~~~v~~~Da~~~l~~~~~~fDvIdlD  121 (374)
T TIGR00308        45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNS---VENIEVPNEDAANVLRYRNRKFHVIDID  121 (374)
T ss_pred             CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhC---CCcEEEEchhHHHHHHHhCCCCCEEEeC
Confidence            3589999999999999999873 23589999999999999999997652   346888888887642 123579999884


Q ss_pred             ccccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988          245 AALHCWPSPSNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       245 ~vl~h~~d~~~~l~el~rvlk~g~~~g~~  273 (319)
                      - +   ..+...+..+.+.++.+|..++-
T Consensus       122 P-f---Gs~~~fld~al~~~~~~glL~vT  146 (374)
T TIGR00308       122 P-F---GTPAPFVDSAIQASAERGLLLVT  146 (374)
T ss_pred             C-C---CCcHHHHHHHHHhcccCCEEEEE
Confidence            4 2   35567788888887777655544

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=97.80  E-value=0.00036  Score=65.14  Aligned_cols=120  Identities=14%  Similarity=0.058  Sum_probs=83.5

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCC--------------------------------C-------eEEE
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY--------------------------------S-------GVVA  195 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~--------------------------------~-------~v~g  195 (319)
                      ...|..+..-.++..++|-=||+|.++.+++-.+.+                                .       .++|
T Consensus       180 AaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G  259 (381)
T COG0116         180 AAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYG  259 (381)
T ss_pred             HHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEE
Confidence            344444444456679999999999999998877642                                1       2779


Q ss_pred             EeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecccc-cCCCCH---HHHHHHHHHhh-cCCCee
Q 020988          196 LDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAAL-HCWPSP---SNAASVFSSSY-SLLSIC  270 (319)
Q Consensus       196 vD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl-~h~~d~---~~~l~el~rvl-k~g~~~  270 (319)
                      +|+++.+++.|+.+....+  ...-|.|.++|+..++-+-+.+|+|+++--. +-+.+.   ..+.+++-+.+ +...-.
T Consensus       260 ~Did~r~i~~Ak~NA~~AG--v~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~w  337 (381)
T COG0116         260 SDIDPRHIEGAKANARAAG--VGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGW  337 (381)
T ss_pred             ecCCHHHHHHHHHHHHhcC--CCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCC
Confidence            9999999999999998864  5677999999999987443789999997521 223333   23444555455 444444


Q ss_pred             EEEEee
Q 020988          271 YLLQFR  276 (319)
Q Consensus       271 g~~~~~  276 (319)
                      ...+|+
T Consensus       338 s~~v~t  343 (381)
T COG0116         338 SRYVFT  343 (381)
T ss_pred             ceEEEE
Confidence            455553

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.78  E-value=0.00064  Score=58.91  Aligned_cols=120  Identities=12%  Similarity=0.132  Sum_probs=83.9

Q ss_pred             CCCcHHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEc
Q 020988          148 FPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA  226 (319)
Q Consensus       148 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~  226 (319)
                      +....+....+..++....++++||||.=||+-+..++...| ..+|+++|++++..+.+.+..+..+  ..+.++++++
T Consensus        55 m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~ag--v~~KI~~i~g  132 (237)
T KOG1663|consen   55 MLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAG--VDHKITFIEG  132 (237)
T ss_pred             eecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcc--ccceeeeeec
Confidence            344455556666666667789999999999987777776643 4699999999999999988777754  5678999999


Q ss_pred             CCCC-CC-----CCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          227 DVCR-LP-----FASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       227 d~~~-lp-----~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      ++.+ ++     ...++||+++.-    |  |.........+.++.++++|++++
T Consensus       133 ~a~esLd~l~~~~~~~tfDfaFvD----a--dK~nY~~y~e~~l~Llr~GGvi~~  181 (237)
T KOG1663|consen  133 PALESLDELLADGESGTFDFAFVD----A--DKDNYSNYYERLLRLLRVGGVIVV  181 (237)
T ss_pred             chhhhHHHHHhcCCCCceeEEEEc----c--chHHHHHHHHHHHhhcccccEEEE
Confidence            8754 11     346899999763    3  333333444455555555555555

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=97.76  E-value=0.00043  Score=60.07  Aligned_cols=97  Identities=13%  Similarity=0.025  Sum_probs=71.9

Q ss_pred             CCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEeccc
Q 020988          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA  246 (319)
Q Consensus       167 ~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v  246 (319)
                      +.+++|||.|.|.-+..++-..|..+|+-+|....-+...+.-..+.   ...|++++.+.++++.-....||+|++..+
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL---~L~nv~i~~~RaE~~~~~~~~~D~vtsRAv  144 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKEL---GLENVEIVHGRAEEFGQEKKQYDVVTSRAV  144 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHh---CCCCeEEehhhHhhcccccccCcEEEeehc
Confidence            58999999999999888887778889999999887777666655554   367899999999988632111999999754


Q ss_pred             ccCCCCHHHHHHHHHHhhcCCCee
Q 020988          247 LHCWPSPSNAASVFSSSYSLLSIC  270 (319)
Q Consensus       247 l~h~~d~~~~l~el~rvlk~g~~~  270 (319)
                          .+......-....+|.+|.+
T Consensus       145 ----a~L~~l~e~~~pllk~~g~~  164 (215)
T COG0357         145 ----ASLNVLLELCLPLLKVGGGF  164 (215)
T ss_pred             ----cchHHHHHHHHHhcccCCcc
Confidence                23444455566677776543

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.76  E-value=0.00024  Score=60.97  Aligned_cols=110  Identities=17%  Similarity=0.071  Sum_probs=75.5

Q ss_pred             ccCCCeEEEEcCCcChHHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC--------CC
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------FA  234 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------~~  234 (319)
                      ..++..|+|+|+..|.|+..+++.. ....|+|+|+.|--              ..+++.++++|++.-+        +.
T Consensus        43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~--------------~~~~V~~iq~d~~~~~~~~~l~~~l~  108 (205)
T COG0293          43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK--------------PIPGVIFLQGDITDEDTLEKLLEALG  108 (205)
T ss_pred             ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc--------------cCCCceEEeeeccCccHHHHHHHHcC
Confidence            3578999999999999999888874 44469999997731              2467999999997744        34


Q ss_pred             CCCccEEEecccc--------cCCCCH---HHHHHHHHHhhcCCCeeEEEEeeccchhcccCCc
Q 020988          235 SGFVDAVHAGAAL--------HCWPSP---SNAASVFSSSYSLLSICYLLQFRYTKIIELDNDN  287 (319)
Q Consensus       235 ~~~fD~V~~~~vl--------~h~~d~---~~~l~el~rvlk~g~~~g~~~~~~~~~~~~~~~~  287 (319)
                      ...+|+|++-.+-        .|....   ..++.-...+|+++|.+-.-+|......+.....
T Consensus       109 ~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~  172 (205)
T COG0293         109 GAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKAL  172 (205)
T ss_pred             CCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHH
Confidence            5668999974322        222111   1234445568889888888888665555544433

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=97.73  E-value=4.4e-05  Score=73.01  Aligned_cols=75  Identities=17%  Similarity=0.279  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC
Q 020988          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (319)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (319)
                      +..+..+.+++....+..+||+-||||.++..+++...  +|+|++++++.++.|+++...+   ...|.+|+++-++++
T Consensus       369 evLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~--~ViGvEi~~~aV~dA~~nA~~N---gisNa~Fi~gqaE~~  443 (534)
T KOG2187|consen  369 EVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVK--RVIGVEISPDAVEDAEKNAQIN---GISNATFIVGQAEDL  443 (534)
T ss_pred             HHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcccc--ceeeeecChhhcchhhhcchhc---Cccceeeeecchhhc
Confidence            34467888888888889999999999999999988765  9999999999999999998776   477999999966553

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=97.72  E-value=0.00041  Score=71.01  Aligned_cols=79  Identities=19%  Similarity=0.229  Sum_probs=63.2

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhC------------------------------------------CCCeEEEEeCCHHH
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSG------------------------------------------TYSGVVALDFSENM  202 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g------------------------------------------~~~~v~gvD~s~~~  202 (319)
                      .++..++|.+||+|.++.+++...                                          ...+++|+|+++.+
T Consensus       189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a  268 (702)
T PRK11783        189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV  268 (702)
T ss_pred             CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence            457899999999999998876531                                          01269999999999


Q ss_pred             HHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC--CCCccEEEecc
Q 020988          203 LRQCYDFIKQDNTILTSNLALVRADVCRLPFA--SGFVDAVHAGA  245 (319)
Q Consensus       203 l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~--~~~fD~V~~~~  245 (319)
                      ++.|++++...+  ....+.+.++|+.+++.+  .++||+|+++-
T Consensus       269 v~~A~~N~~~~g--~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNP  311 (702)
T PRK11783        269 IQAARKNARRAG--VAELITFEVKDVADLKNPLPKGPTGLVISNP  311 (702)
T ss_pred             HHHHHHHHHHcC--CCcceEEEeCChhhcccccccCCCCEEEECC
Confidence            999999998764  334689999999887643  35799999985

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=97.72  E-value=1.7e-05  Score=67.29  Aligned_cols=97  Identities=15%  Similarity=0.171  Sum_probs=59.6

Q ss_pred             CCCeEEEEcCCcChHHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC--------CC--
Q 020988          166 QGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------FA--  234 (319)
Q Consensus       166 ~~~~VLDiGcG~G~~~~~l~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------~~--  234 (319)
                      ++.++||+||++|.|+..+.+.+ +..+|+|+|+.+.         .     ...++.++++|+.+..        +.  
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~---------~-----~~~~~~~i~~d~~~~~~~~~i~~~~~~~   88 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM---------D-----PLQNVSFIQGDITNPENIKDIRKLLPES   88 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST---------G-----S-TTEEBTTGGGEEEEHSHHGGGSHGTT
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEecccc---------c-----cccceeeeecccchhhHHHhhhhhcccc
Confidence            45899999999999999999987 4469999999875         0     1246677777764321        11  


Q ss_pred             CCCccEEEecccccCCCC----HH-------HHHHHHHHhhcCCCeeEEEEee
Q 020988          235 SGFVDAVHAGAALHCWPS----PS-------NAASVFSSSYSLLSICYLLQFR  276 (319)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d----~~-------~~l~el~rvlk~g~~~g~~~~~  276 (319)
                      .+.||+|++-.+.....+    ..       ..+.-+.+.|+++|.+-+-+|.
T Consensus        89 ~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~  141 (181)
T PF01728_consen   89 GEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK  141 (181)
T ss_dssp             TCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred             ccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence            268999999764333222    11       2233334566777766666664

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function

Probab=97.69  E-value=2.1e-05  Score=55.61  Aligned_cols=47  Identities=26%  Similarity=0.557  Sum_probs=30.9

Q ss_pred             cccCeeeccCCCcccccc---CC----------------CCCcccceecCceeeCccCCccccCCc
Q 020988           56 LEGDLFSCPICYEPLIRK---GP----------------TGLTLGAIYRSGFKCRKCDKTYSSKDN  102 (319)
Q Consensus        56 ~~~~~l~CP~C~~~l~~~---~~----------------~~~~~~~i~~~~~~C~~Cg~~f~~~~g  102 (319)
                      ++-++++||.|.+||...   ..                ...-...+..+.+.|++||+.|++++|
T Consensus         3 ~llniL~Cp~ck~pL~~~~l~~~~~~~~~~lp~~~~~~~~~l~~~~i~eg~L~Cp~c~r~YPI~dG   68 (68)
T PF03966_consen    3 LLLNILACPVCKGPLDWEALVETAQLGLSELPKELPEDYHVLLEVEIVEGELICPECGREYPIRDG   68 (68)
T ss_dssp             GGCGTBB-TTTSSBEHHHHHHHHHHCCCCHCHHCHHCHCEHHCTEETTTTEEEETTTTEEEEEETT
T ss_pred             hHHhhhcCCCCCCcchHHHHHHHHHhCcccCCCCCccchhhhhcccccCCEEEcCCCCCEEeCCCC
Confidence            356899999999998100   00                000012455689999999999999876

The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.65  E-value=0.00055  Score=63.14  Aligned_cols=94  Identities=21%  Similarity=0.217  Sum_probs=67.9

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (319)
                      .++.++|||||++|.|+..+.+.|.  +|++||..+ +..    .+.     ..+++....+|........+.+|.|+|-
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~rG~--~V~AVD~g~-l~~----~L~-----~~~~V~h~~~d~fr~~p~~~~vDwvVcD  277 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRRGM--FVTAVDNGP-MAQ----SLM-----DTGQVEHLRADGFKFRPPRKNVDWLVCD  277 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcCC--EEEEEechh-cCH----hhh-----CCCCEEEEeccCcccCCCCCCCCEEEEe
Confidence            5789999999999999999999986  999999654 222    122     2468888888876653235789999885


Q ss_pred             ccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          245 AALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       245 ~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      -+    ..|.+..+-+.+-+..| .....+|
T Consensus       278 mv----e~P~rva~lm~~Wl~~g-~cr~aIf  303 (357)
T PRK11760        278 MV----EKPARVAELMAQWLVNG-WCREAIF  303 (357)
T ss_pred             cc----cCHHHHHHHHHHHHhcC-cccEEEE
Confidence            43    35777777777766555 3333444

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=97.56  E-value=0.00066  Score=61.65  Aligned_cols=109  Identities=18%  Similarity=0.168  Sum_probs=70.8

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-C-C-CCCCccEE
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P-F-ASGFVDAV  241 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p-~-~~~~fD~V  241 (319)
                      ..+.+|||+=|=||.|+..++..| ..+|+.||.|..+++.+++++.-++. ...++++++.|+.+. . . ..++||+|
T Consensus       122 ~~gkrvLnlFsYTGgfsv~Aa~gG-A~~v~~VD~S~~al~~a~~N~~lNg~-~~~~~~~~~~Dvf~~l~~~~~~~~fD~I  199 (286)
T PF10672_consen  122 AKGKRVLNLFSYTGGFSVAAAAGG-AKEVVSVDSSKRALEWAKENAALNGL-DLDRHRFIQGDVFKFLKRLKKGGRFDLI  199 (286)
T ss_dssp             CTTCEEEEET-TTTHHHHHHHHTT-ESEEEEEES-HHHHHHHHHHHHHTT--CCTCEEEEES-HHHHHHHHHHTT-EEEE
T ss_pred             cCCCceEEecCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCC-CccceEEEecCHHHHHHHHhcCCCCCEE
Confidence            457899999999999999888766 35799999999999999999887642 235789999998652 1 1 24689999


Q ss_pred             Eecc-cccC-CCCHHHH-HHHHHHhhcCCCeeEEEEe
Q 020988          242 HAGA-ALHC-WPSPSNA-ASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       242 ~~~~-vl~h-~~d~~~~-l~el~rvlk~g~~~g~~~~  275 (319)
                      ++-- .+-. -.+..+. .+-+.+.++.+.++|.+++
T Consensus       200 IlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~  236 (286)
T PF10672_consen  200 ILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLT  236 (286)
T ss_dssp             EE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             EECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence            9832 1111 1122222 2223445555666676665

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=97.55  E-value=0.00027  Score=61.14  Aligned_cols=74  Identities=18%  Similarity=0.230  Sum_probs=55.9

Q ss_pred             EEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC-CCCCCCCccEEEeccc
Q 020988          170 LVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFASGFVDAVHAGAA  246 (319)
Q Consensus       170 VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~~~~~fD~V~~~~v  246 (319)
                      |.||||-.|++...+.+.+...+++++|+++..++.|++++...+  ...++++..+|-.. ++. .+..|+|+..++
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~--l~~~i~~rlgdGL~~l~~-~e~~d~ivIAGM   75 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYG--LEDRIEVRLGDGLEVLKP-GEDVDTIVIAGM   75 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT---TTTEEEEE-SGGGG--G-GG---EEEEEEE
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC--CcccEEEEECCcccccCC-CCCCCEEEEecC
Confidence            689999999999999999977789999999999999999998864  45789999999543 432 233788887654

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=97.53  E-value=0.0017  Score=61.05  Aligned_cols=87  Identities=20%  Similarity=0.211  Sum_probs=68.7

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCC--CeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC
Q 020988          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY--SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (319)
Q Consensus       154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (319)
                      ........+.+.++.+|||..++.|.=+.++++...+  ..|+++|.++.-++..+++++..|   ..++..+..|...+
T Consensus       144 sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG---~~nv~~~~~d~~~~  220 (355)
T COG0144         144 ASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLG---VRNVIVVNKDARRL  220 (355)
T ss_pred             HHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcC---CCceEEEecccccc
Confidence            3455556778899999999999999988888888653  357999999999999999998863   55677888887665


Q ss_pred             C---CCCCCccEEEe
Q 020988          232 P---FASGFVDAVHA  243 (319)
Q Consensus       232 p---~~~~~fD~V~~  243 (319)
                      +   ...++||.|+.
T Consensus       221 ~~~~~~~~~fD~iLl  235 (355)
T COG0144         221 AELLPGGEKFDRILL  235 (355)
T ss_pred             cccccccCcCcEEEE
Confidence            4   22236999996

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=97.53  E-value=0.00068  Score=62.00  Aligned_cols=87  Identities=10%  Similarity=0.161  Sum_probs=70.5

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC--
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--  232 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--  232 (319)
                      .+.+.+.+...+++.++|.=+|.|..+..+++..+..+|+|+|.++.+++.+++++...    ..++.++.+++.++.  
T Consensus         9 l~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~----~~R~~~i~~nF~~l~~~   84 (305)
T TIGR00006         9 LDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF----EGRVVLIHDNFANFFEH   84 (305)
T ss_pred             HHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc----CCcEEEEeCCHHHHHHH
Confidence            45566677777889999999999999999998865579999999999999999988653    458999999887753  


Q ss_pred             ---CCCCCccEEEecc
Q 020988          233 ---FASGFVDAVHAGA  245 (319)
Q Consensus       233 ---~~~~~fD~V~~~~  245 (319)
                         ....++|.|+...
T Consensus        85 l~~~~~~~vDgIl~DL  100 (305)
T TIGR00006        85 LDELLVTKIDGILVDL  100 (305)
T ss_pred             HHhcCCCcccEEEEec
Confidence               1335799998854

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=97.52  E-value=0.0005  Score=58.10  Aligned_cols=97  Identities=18%  Similarity=0.174  Sum_probs=73.9

Q ss_pred             ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (319)
                      ...+++|||+|.|+|..+...++.|. ..|+..|+.+......+-+.+.+    ...+.+...|...   .+..||+|+.
T Consensus        77 tVrgkrVLd~gagsgLvaIAaa~aGA-~~v~a~d~~P~~~~ai~lNa~an----gv~i~~~~~d~~g---~~~~~Dl~La  148 (218)
T COG3897          77 TVRGKRVLDLGAGSGLVAIAAARAGA-AEVVAADIDPWLEQAIRLNAAAN----GVSILFTHADLIG---SPPAFDLLLA  148 (218)
T ss_pred             ccccceeeecccccChHHHHHHHhhh-HHHHhcCCChHHHHHhhcchhhc----cceeEEeeccccC---CCcceeEEEe
Confidence            34789999999999999999999874 68999999998888888777764    3567777777655   4678999999


Q ss_pred             cccccCCCCHHHHHHHHHHhhcCCC
Q 020988          244 GAALHCWPSPSNAASVFSSSYSLLS  268 (319)
Q Consensus       244 ~~vl~h~~d~~~~l~el~rvlk~g~  268 (319)
                      +.++..-+--.+.+.-+.++...|.
T Consensus       149 gDlfy~~~~a~~l~~~~~~l~~~g~  173 (218)
T COG3897         149 GDLFYNHTEADRLIPWKDRLAEAGA  173 (218)
T ss_pred             eceecCchHHHHHHHHHHHHHhCCC
Confidence            9987755455566664455544443

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=97.52  E-value=3.8e-05  Score=65.18  Aligned_cols=87  Identities=15%  Similarity=0.056  Sum_probs=68.3

Q ss_pred             CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecc
Q 020988          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (319)
Q Consensus       166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (319)
                      .+.++||+|+|.|..+..++....  +|++.++|..|....+++          +..++.  ..+..-.+-+||+|.|.+
T Consensus       112 ~~~~lLDlGAGdGeit~~m~p~fe--evyATElS~tMr~rL~kk----------~ynVl~--~~ew~~t~~k~dli~clN  177 (288)
T KOG3987|consen  112 EPVTLLDLGAGDGEITLRMAPTFE--EVYATELSWTMRDRLKKK----------NYNVLT--EIEWLQTDVKLDLILCLN  177 (288)
T ss_pred             CCeeEEeccCCCcchhhhhcchHH--HHHHHHhhHHHHHHHhhc----------CCceee--ehhhhhcCceeehHHHHH
Confidence            457999999999999999988765  899999999998877664          222222  112111244799999999


Q ss_pred             cccCCCCHHHHHHHHHHhhcC
Q 020988          246 ALHCWPSPSNAASVFSSSYSL  266 (319)
Q Consensus       246 vl~h~~d~~~~l~el~rvlk~  266 (319)
                      .|.--.+|-+.++.++.+++|
T Consensus       178 lLDRc~~p~kLL~Di~~vl~p  198 (288)
T KOG3987|consen  178 LLDRCFDPFKLLEDIHLVLAP  198 (288)
T ss_pred             HHHhhcChHHHHHHHHHHhcc
Confidence            999888999999999999998

>KOG2730 consensus Methylase [General function prediction only]

Probab=97.40  E-value=0.00033  Score=60.17  Aligned_cols=77  Identities=19%  Similarity=0.245  Sum_probs=63.3

Q ss_pred             CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC----CCCCCCccEE
Q 020988          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PFASGFVDAV  241 (319)
Q Consensus       166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l----p~~~~~fD~V  241 (319)
                      ....|+|.-||.|..+.+++..++  .|++||+++.-+..|+.+++-.|  ...+++|++||+.++    .+....+|+|
T Consensus        94 ~~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaeiYG--I~~rItFI~GD~ld~~~~lq~~K~~~~~v  169 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEVYG--VPDRITFICGDFLDLASKLKADKIKYDCV  169 (263)
T ss_pred             CcchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhccceeec--CCceeEEEechHHHHHHHHhhhhheeeee
Confidence            457899999999999999999988  99999999999999999988765  345999999998764    3444456687


Q ss_pred             Eeccc
Q 020988          242 HAGAA  246 (319)
Q Consensus       242 ~~~~v  246 (319)
                      +.+..
T Consensus       170 f~spp  174 (263)
T KOG2730|consen  170 FLSPP  174 (263)
T ss_pred             ecCCC
Confidence            77543

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.34  E-value=0.002  Score=55.53  Aligned_cols=86  Identities=15%  Similarity=0.193  Sum_probs=68.4

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC-C
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-A  234 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-~  234 (319)
                      ..+.+++..  +.++.||||-.+++...+.+.++...+++.|+++..++.|.+++.+.+  ..++++...+|... ++ .
T Consensus         8 ~~va~~V~~--~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~--l~~~i~vr~~dgl~-~l~~   82 (226)
T COG2384           8 TTVANLVKQ--GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNN--LSERIDVRLGDGLA-VLEL   82 (226)
T ss_pred             HHHHHHHHc--CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcC--CcceEEEeccCCcc-ccCc
Confidence            445555533  456999999999999999999998999999999999999999998764  56778888888733 33 3


Q ss_pred             CCCccEEEeccc
Q 020988          235 SGFVDAVHAGAA  246 (319)
Q Consensus       235 ~~~fD~V~~~~v  246 (319)
                      +..+|+|+..++
T Consensus        83 ~d~~d~ivIAGM   94 (226)
T COG2384          83 EDEIDVIVIAGM   94 (226)
T ss_pred             cCCcCEEEEeCC
Confidence            447999987654

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=97.31  E-value=0.0025  Score=56.97  Aligned_cols=102  Identities=19%  Similarity=0.141  Sum_probs=59.1

Q ss_pred             CCeEEEEcCCc--ChHHHHHHh-hCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCC--eEEEEcCCCCCC---------
Q 020988          167 GGLLVDVSCGS--GLFSRKFAK-SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSN--LALVRADVCRLP---------  232 (319)
Q Consensus       167 ~~~VLDiGcG~--G~~~~~l~~-~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~--i~~~~~d~~~lp---------  232 (319)
                      =...||||||-  -..+.++++ ..|..+|+-+|.++-.+..++..+...     .+  ..++++|+.+..         
T Consensus        69 IrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~-----~~g~t~~v~aD~r~p~~iL~~p~~~  143 (267)
T PF04672_consen   69 IRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADN-----PRGRTAYVQADLRDPEAILAHPEVR  143 (267)
T ss_dssp             --EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT------TTSEEEEEE--TT-HHHHHCSHHHH
T ss_pred             cceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCC-----CCccEEEEeCCCCCHHHHhcCHHHH
Confidence            35799999993  334444544 468889999999999999999988653     44  889999997632         


Q ss_pred             --CCCCCccEEEecccccCCCC---HHHHHHHHHHhhcCCCeeEEE
Q 020988          233 --FASGFVDAVHAGAALHCWPS---PSNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       233 --~~~~~fD~V~~~~vl~h~~d---~~~~l~el~rvlk~g~~~g~~  273 (319)
                        +.-..-=.|++..+|||++|   +...++.++..|-||..+.+-
T Consensus       144 ~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~is  189 (267)
T PF04672_consen  144 GLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAIS  189 (267)
T ss_dssp             CC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEE
T ss_pred             hcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEE
Confidence              11122236778889999987   445555666665565544443

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=97.21  E-value=0.0013  Score=55.82  Aligned_cols=103  Identities=17%  Similarity=0.307  Sum_probs=69.1

Q ss_pred             CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCc----cCCCCeEEEEcCCCC-CC--CCCCCc
Q 020988          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT----ILTSNLALVRADVCR-LP--FASGFV  238 (319)
Q Consensus       166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~----~~~~~i~~~~~d~~~-lp--~~~~~f  238 (319)
                      +.-.+.|||||.|.++..++...|...+.|+++-....++.++++...+.    ....|+.+...+... +|  |..++.
T Consensus        60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL  139 (249)
T KOG3115|consen   60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL  139 (249)
T ss_pred             ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence            34678999999999999999999999999999999999999988876421    113456666655433 23  222222


Q ss_pred             cEEEecccccCCCCHH-------------HHHHHHHHhhcCCCeeEEE
Q 020988          239 DAVHAGAALHCWPSPS-------------NAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       239 D~V~~~~vl~h~~d~~-------------~~l~el~rvlk~g~~~g~~  273 (319)
                      +-.     +..++||.             ..+.+..=+++.+|..+.+
T Consensus       140 skm-----ff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~yti  182 (249)
T KOG3115|consen  140 SKM-----FFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTI  182 (249)
T ss_pred             ccc-----eeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEE
Confidence            222     33344442             3355666678888776655

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=97.20  E-value=0.0037  Score=56.92  Aligned_cols=118  Identities=17%  Similarity=0.146  Sum_probs=84.5

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-  232 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-  232 (319)
                      .......+.+.++.+|||+.+|.|.-+..+++... ...+++.|+++.-++..+++++..   ...++.....|..... 
T Consensus        74 S~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~---g~~~v~~~~~D~~~~~~  150 (283)
T PF01189_consen   74 SQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRL---GVFNVIVINADARKLDP  150 (283)
T ss_dssp             HHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHT---T-SSEEEEESHHHHHHH
T ss_pred             cccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhc---CCceEEEEeeccccccc
Confidence            34445567788999999999999999888888753 569999999999999999988876   3567888877776651 


Q ss_pred             -CCCCCccEEEe------cccccCCCCHHHH-------------HHHHHHhhcCC----CeeEEEEe
Q 020988          233 -FASGFVDAVHA------GAALHCWPSPSNA-------------ASVFSSSYSLL----SICYLLQF  275 (319)
Q Consensus       233 -~~~~~fD~V~~------~~vl~h~~d~~~~-------------l~el~rvlk~g----~~~g~~~~  275 (319)
                       .....||.|+.      .+++..-++....             .+-+...++-.    +++|.+++
T Consensus       151 ~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvY  217 (283)
T PF01189_consen  151 KKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVY  217 (283)
T ss_dssp             HHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEE
T ss_pred             cccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEE
Confidence             22346999996      2355555543211             22234456667    78888888

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=97.17  E-value=0.0041  Score=53.45  Aligned_cols=104  Identities=9%  Similarity=0.121  Sum_probs=77.9

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC--CCCCCCccEEE
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAVH  242 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD~V~  242 (319)
                      .++++||.||-|-|.....+.+.-+ .+-+-++..++.++..++..    +....|+..+.+--++.  .++++.||-|+
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p-~~H~IiE~hp~V~krmr~~g----w~ek~nViil~g~WeDvl~~L~d~~FDGI~  174 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPP-DEHWIIEAHPDVLKRMRDWG----WREKENVIILEGRWEDVLNTLPDKHFDGIY  174 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCC-cceEEEecCHHHHHHHHhcc----cccccceEEEecchHhhhccccccCcceeE
Confidence            6799999999999998877777654 45678999999998777643    33456777777643332  24578899998


Q ss_pred             ecccccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988          243 AGAALHCWPSPSNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       243 ~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~  273 (319)
                      --..-+|..|...+.+.+.|+|||+|.+..+
T Consensus       175 yDTy~e~yEdl~~~hqh~~rLLkP~gv~Syf  205 (271)
T KOG1709|consen  175 YDTYSELYEDLRHFHQHVVRLLKPEGVFSYF  205 (271)
T ss_pred             eechhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence            7655577778778888888999998765543

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=97.14  E-value=0.014  Score=52.78  Aligned_cols=101  Identities=12%  Similarity=0.091  Sum_probs=61.5

Q ss_pred             CCeEEEEcCCcChHHHHHHh--hCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988          167 GGLLVDVSCGSGLFSRKFAK--SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (319)
Q Consensus       167 ~~~VLDiGcG~G~~~~~l~~--~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (319)
                      +.+|+=||+|.=-++.-+..  .+....|+++|+++.+++.+++-.... .+...++.|+.+|....+..-..||+|+..
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~-~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA  199 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASD-LGLSKRMSFITADVLDVTYDLKEYDVVFLA  199 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH----HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhc-ccccCCeEEEecchhccccccccCCEEEEh
Confidence            45999999998766544443  345568999999999999999877621 123578999999998776545689999886


Q ss_pred             cccc-CCCCHHHHHHHHHHhhcCCC
Q 020988          245 AALH-CWPSPSNAASVFSSSYSLLS  268 (319)
Q Consensus       245 ~vl~-h~~d~~~~l~el~rvlk~g~  268 (319)
                      .-.. --.+..+.++.+.+..++|.
T Consensus       200 alVg~~~e~K~~Il~~l~~~m~~ga  224 (276)
T PF03059_consen  200 ALVGMDAEPKEEILEHLAKHMAPGA  224 (276)
T ss_dssp             TT-S----SHHHHHHHHHHHS-TTS
T ss_pred             hhcccccchHHHHHHHHHhhCCCCc
Confidence            5433 22367788999999988877

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.11  E-value=0.0012  Score=59.03  Aligned_cols=109  Identities=17%  Similarity=0.219  Sum_probs=66.1

Q ss_pred             cCCCeEEEEcCCcChH-HHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCcc-C-------------C-----------
Q 020988          165 AQGGLLVDVSCGSGLF-SRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI-L-------------T-----------  218 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~-~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~-~-------------~-----------  218 (319)
                      .++.++||||||.-.. +..+.+.  ..+++..|.++.-++..++-++..+.. +             .           
T Consensus        55 ~~g~~llDiGsGPtiy~~lsa~~~--f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR  132 (256)
T PF01234_consen   55 VKGETLLDIGSGPTIYQLLSACEW--FEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLR  132 (256)
T ss_dssp             S-EEEEEEES-TT--GGGTTGGGT--EEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHhhhhHHHh--hcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHH
Confidence            3567999999998544 2223333  348999999999888777665543110 0             0           


Q ss_pred             CCe-EEEEcCCCCCC-CCC-----CCccEEEecccccCCC-CHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          219 SNL-ALVRADVCRLP-FAS-----GFVDAVHAGAALHCWP-SPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       219 ~~i-~~~~~d~~~lp-~~~-----~~fD~V~~~~vl~h~~-d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      ..| .++.+|+.+.+ +..     ++||+|++.++|+..- |.+...+.+.++.+.++|+|.+++
T Consensus       133 ~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil  197 (256)
T PF01234_consen  133 RAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLIL  197 (256)
T ss_dssp             HHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             HhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence            112 36778887753 322     3599999999999754 677666666666666666666665

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PRK10742 putative methyltransferase; Provisional

Probab=97.09  E-value=0.0036  Score=55.38  Aligned_cols=93  Identities=15%  Similarity=0.014  Sum_probs=69.5

Q ss_pred             HHHHHHhhccCCC--eEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcC----cc--CCCCeEEEEcC
Q 020988          156 KMAQEYFKSAQGG--LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN----TI--LTSNLALVRAD  227 (319)
Q Consensus       156 ~~l~~~l~~~~~~--~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~----~~--~~~~i~~~~~d  227 (319)
                      +.+.+.+...++.  +|||.=+|.|..+..++..|.  +|+++|-++.+....++.+....    ..  ...+++++.+|
T Consensus        76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~--~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~d  153 (250)
T PRK10742         76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC--RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS  153 (250)
T ss_pred             cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCc
Confidence            4556666666666  899999999999999999976  79999999999888887776520    00  11468888888


Q ss_pred             CCCC-CCCCCCccEEEecccccCC
Q 020988          228 VCRL-PFASGFVDAVHAGAALHCW  250 (319)
Q Consensus       228 ~~~l-p~~~~~fD~V~~~~vl~h~  250 (319)
                      ..+. .-...+||+|++--.+.|-
T Consensus       154 a~~~L~~~~~~fDVVYlDPMfp~~  177 (250)
T PRK10742        154 SLTALTDITPRPQVVYLDPMFPHK  177 (250)
T ss_pred             HHHHHhhCCCCCcEEEECCCCCCC
Confidence            7553 2123479999987777764

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.05  E-value=0.0018  Score=52.24  Aligned_cols=100  Identities=15%  Similarity=0.195  Sum_probs=72.1

Q ss_pred             cHHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC
Q 020988          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (319)
Q Consensus       151 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (319)
                      ..+..+.+..++...+.++.+|+|.|.|+...+.++.+ -...+|+++++-.+.+++-+.-..+  ......|..-|+..
T Consensus        57 tteQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g--~~k~trf~RkdlwK  133 (199)
T KOG4058|consen   57 TTEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAG--CAKSTRFRRKDLWK  133 (199)
T ss_pred             cHHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHh--cccchhhhhhhhhh
Confidence            34445666777777788999999999999999998887 2478999999999888876554332  45677888888888


Q ss_pred             CCCCCCCccEEEecccccCCCCHHH
Q 020988          231 LPFASGFVDAVHAGAALHCWPSPSN  255 (319)
Q Consensus       231 lp~~~~~fD~V~~~~vl~h~~d~~~  255 (319)
                      ..+.+  |..|+.+.+-.-++|.+.
T Consensus       134 ~dl~d--y~~vviFgaes~m~dLe~  156 (199)
T KOG4058|consen  134 VDLRD--YRNVVIFGAESVMPDLED  156 (199)
T ss_pred             ccccc--cceEEEeehHHHHhhhHH
Confidence            77654  555555554444555543

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.01  E-value=0.00054  Score=56.09  Aligned_cols=104  Identities=14%  Similarity=0.062  Sum_probs=70.4

Q ss_pred             CCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC--CCCCCCCccEEE
Q 020988          166 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR--LPFASGFVDAVH  242 (319)
Q Consensus       166 ~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~--lp~~~~~fD~V~  242 (319)
                      .+.+|||+|.|. |..+..++...+...|...|-++..++..++....+.......+..+..+...  ......+||+|+
T Consensus        29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl  108 (201)
T KOG3201|consen   29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL  108 (201)
T ss_pred             hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence            467899999994 65666666667778999999999999988876543211112222222222211  112346899999


Q ss_pred             ecccccCCCCHHHHHHHHHHhhcCCCe
Q 020988          243 AGAALHCWPSPSNAASVFSSSYSLLSI  269 (319)
Q Consensus       243 ~~~vl~h~~d~~~~l~el~rvlk~g~~  269 (319)
                      +...+..-...+...+-++++|+|-|.
T Consensus       109 aADClFfdE~h~sLvdtIk~lL~p~g~  135 (201)
T KOG3201|consen  109 AADCLFFDEHHESLVDTIKSLLRPSGR  135 (201)
T ss_pred             eccchhHHHHHHHHHHHHHHHhCcccc
Confidence            998776544556777889999999887

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=97.00  E-value=0.0042  Score=56.62  Aligned_cols=94  Identities=13%  Similarity=0.111  Sum_probs=51.0

Q ss_pred             HHHHHHHhhccC-----CCeEEEEcCCcChHHHHH--HhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcC
Q 020988          155 FKMAQEYFKSAQ-----GGLLVDVSCGSGLFSRKF--AKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD  227 (319)
Q Consensus       155 ~~~l~~~l~~~~-----~~~VLDiGcG~G~~~~~l--~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d  227 (319)
                      ...+.+++....     .-++||||+|..-.-..+  ...++  +++|+|+++..++.|+++++.+ .....+|.++...
T Consensus        86 i~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W--~fvaTdID~~sl~~A~~nv~~N-~~L~~~I~l~~~~  162 (299)
T PF05971_consen   86 IHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGW--SFVATDIDPKSLESARENVERN-PNLESRIELRKQK  162 (299)
T ss_dssp             HHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHHT--T-TTTEEEEE--
T ss_pred             HHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCC--eEEEecCCHHHHHHHHHHHHhc-cccccceEEEEcC
Confidence            445556664322     357999999987542222  22355  9999999999999999999875 2246678887653


Q ss_pred             CCC-----CCCCCCCccEEEecccccCCC
Q 020988          228 VCR-----LPFASGFVDAVHAGAALHCWP  251 (319)
Q Consensus       228 ~~~-----lp~~~~~fD~V~~~~vl~h~~  251 (319)
                      -..     +...++.||+.+|+--++.-.
T Consensus       163 ~~~~i~~~i~~~~e~~dftmCNPPFy~s~  191 (299)
T PF05971_consen  163 NPDNIFDGIIQPNERFDFTMCNPPFYSSQ  191 (299)
T ss_dssp             ST-SSTTTSTT--S-EEEEEE-----SS-
T ss_pred             CccccchhhhcccceeeEEecCCccccCh
Confidence            221     222346899999987766543

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=96.93  E-value=0.0035  Score=52.70  Aligned_cols=68  Identities=15%  Similarity=0.183  Sum_probs=51.9

Q ss_pred             ccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEc-CCCCC--------CC
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DVCRL--------PF  233 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~-d~~~l--------p~  233 (319)
                      ..|+.+|||+||..|.|+.-+.+. +|+.-|.|||+-.-              ....++.++++ |+.+.        .+
T Consensus        67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~--------------~p~~Ga~~i~~~dvtdp~~~~ki~e~l  132 (232)
T KOG4589|consen   67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI--------------EPPEGATIIQGNDVTDPETYRKIFEAL  132 (232)
T ss_pred             cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec--------------cCCCCcccccccccCCHHHHHHHHHhC
Confidence            357899999999999999888877 48889999998331              13467777777 66542        14


Q ss_pred             CCCCccEEEecc
Q 020988          234 ASGFVDAVHAGA  245 (319)
Q Consensus       234 ~~~~fD~V~~~~  245 (319)
                      ++...|+|++-.
T Consensus       133 p~r~VdvVlSDM  144 (232)
T KOG4589|consen  133 PNRPVDVVLSDM  144 (232)
T ss_pred             CCCcccEEEecc
Confidence            678999999854

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=96.91  E-value=0.0039  Score=55.05  Aligned_cols=82  Identities=13%  Similarity=0.161  Sum_probs=61.1

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (319)
                      .++.+|+|||||.=-++.......+...++|+|++..+++...+.+...    ..+.++...|+..-+ +....|+.+..
T Consensus       104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l----~~~~~~~v~Dl~~~~-~~~~~DlaLll  178 (251)
T PF07091_consen  104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVL----GVPHDARVRDLLSDP-PKEPADLALLL  178 (251)
T ss_dssp             ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHT----T-CEEEEEE-TTTSH-TTSEESEEEEE
T ss_pred             CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhh----CCCcceeEeeeeccC-CCCCcchhhHH
Confidence            3478999999999999888777766779999999999999999887663    467778888887654 35789999998


Q ss_pred             ccccCCC
Q 020988          245 AALHCWP  251 (319)
Q Consensus       245 ~vl~h~~  251 (319)
                      =+++.+.
T Consensus       179 K~lp~le  185 (251)
T PF07091_consen  179 KTLPCLE  185 (251)
T ss_dssp             T-HHHHH
T ss_pred             HHHHHHH
Confidence            7777663

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=96.86  E-value=0.024  Score=49.29  Aligned_cols=106  Identities=16%  Similarity=0.101  Sum_probs=68.7

Q ss_pred             hccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC---CCCCCc
Q 020988          163 KSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFV  238 (319)
Q Consensus       163 ~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~f  238 (319)
                      ...++.+||-+|.++|....++++- ++...|+++++|+...+..-.-.++     .+|+--+..|+....   .--+.+
T Consensus        70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~-----R~NIiPIl~DAr~P~~Y~~lv~~V  144 (229)
T PF01269_consen   70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK-----RPNIIPILEDARHPEKYRMLVEMV  144 (229)
T ss_dssp             S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-----STTEEEEES-TTSGGGGTTTS--E
T ss_pred             CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc-----CCceeeeeccCCChHHhhcccccc
Confidence            4568999999999999999999887 5577999999999665554433333     268887888987531   113589


Q ss_pred             cEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          239 DAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       239 D~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      |+|++--+  +-....-+.......||++|.+-+.+-
T Consensus       145 DvI~~DVa--Qp~Qa~I~~~Na~~fLk~gG~~~i~iK  179 (229)
T PF01269_consen  145 DVIFQDVA--QPDQARIAALNARHFLKPGGHLIISIK  179 (229)
T ss_dssp             EEEEEE-S--STTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cEEEecCC--ChHHHHHHHHHHHhhccCCcEEEEEEe
Confidence            99988522  222223445566678888876655543

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.75  E-value=0.018  Score=50.43  Aligned_cols=97  Identities=18%  Similarity=0.167  Sum_probs=69.1

Q ss_pred             ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEE-EEcCCCCCC---CCCCCcc
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLAL-VRADVCRLP---FASGFVD  239 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~-~~~d~~~lp---~~~~~fD  239 (319)
                      ..++..+||||..||.|+.-+.+.|. ..|+++|...+.+.+--+.        .+++.. ...|+..+.   +. +..|
T Consensus        77 ~~k~kv~LDiGsSTGGFTd~lLq~gA-k~VyavDVG~~Ql~~kLR~--------d~rV~~~E~tN~r~l~~~~~~-~~~d  146 (245)
T COG1189          77 DVKGKVVLDIGSSTGGFTDVLLQRGA-KHVYAVDVGYGQLHWKLRN--------DPRVIVLERTNVRYLTPEDFT-EKPD  146 (245)
T ss_pred             CCCCCEEEEecCCCccHHHHHHHcCC-cEEEEEEccCCccCHhHhc--------CCcEEEEecCChhhCCHHHcc-cCCC
Confidence            45789999999999999999999974 6999999998777654442        344443 445665543   32 3678


Q ss_pred             EEEecccccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988          240 AVHAGAALHCWPSPSNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       240 ~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~  273 (319)
                      ++++--++-   .....+-.+..++++++..-.+
T Consensus       147 ~~v~DvSFI---SL~~iLp~l~~l~~~~~~~v~L  177 (245)
T COG1189         147 LIVIDVSFI---SLKLILPALLLLLKDGGDLVLL  177 (245)
T ss_pred             eEEEEeehh---hHHHHHHHHHHhcCCCceEEEE
Confidence            888865544   4466777888888877654444

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=96.71  E-value=0.013  Score=54.23  Aligned_cols=78  Identities=17%  Similarity=0.253  Sum_probs=59.6

Q ss_pred             CCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHH--HHhhcC--ccCCCCeEEEEcCCCCC-CCCCCCccEE
Q 020988          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYD--FIKQDN--TILTSNLALVRADVCRL-PFASGFVDAV  241 (319)
Q Consensus       167 ~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~--~~~~~~--~~~~~~i~~~~~d~~~l-p~~~~~fD~V  241 (319)
                      -.+||-+|.|.|..++++.+.-...+++-+|++|.|++.+++  .+...|  ....++++++..|+.+. .-..+.||+|
T Consensus       290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~v  369 (508)
T COG4262         290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVV  369 (508)
T ss_pred             cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEE
Confidence            468999999999999999987325689999999999999983  333322  23457899999888764 2234689999


Q ss_pred             Eec
Q 020988          242 HAG  244 (319)
Q Consensus       242 ~~~  244 (319)
                      +.-
T Consensus       370 IVD  372 (508)
T COG4262         370 IVD  372 (508)
T ss_pred             EEe
Confidence            873

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=96.66  E-value=0.0049  Score=56.43  Aligned_cols=85  Identities=18%  Similarity=0.289  Sum_probs=60.6

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC---
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---  232 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---  232 (319)
                      +.+.+.+...+++.++|.=-|.|..+..+++..++.+++|+|.++.+++.+++++...    ..++.++.+++.++.   
T Consensus        10 ~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~----~~r~~~~~~~F~~l~~~l   85 (310)
T PF01795_consen   10 KEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF----DDRFIFIHGNFSNLDEYL   85 (310)
T ss_dssp             HHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC----CTTEEEEES-GGGHHHHH
T ss_pred             HHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc----cceEEEEeccHHHHHHHH
Confidence            4556677778899999999999999999999877789999999999999999887652    468888888876653   


Q ss_pred             --C-CCCCccEEEec
Q 020988          233 --F-ASGFVDAVHAG  244 (319)
Q Consensus       233 --~-~~~~fD~V~~~  244 (319)
                        . ....+|.|++-
T Consensus        86 ~~~~~~~~~dgiL~D  100 (310)
T PF01795_consen   86 KELNGINKVDGILFD  100 (310)
T ss_dssp             HHTTTTS-EEEEEEE
T ss_pred             HHccCCCccCEEEEc
Confidence              2 23467777763

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=96.56  E-value=0.0017  Score=49.75  Aligned_cols=99  Identities=14%  Similarity=0.153  Sum_probs=42.0

Q ss_pred             EEEcCCcChHHHHHHhhCCC---CeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC--CCCCCCccEEEecc
Q 020988          171 VDVSCGSGLFSRKFAKSGTY---SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAVHAGA  245 (319)
Q Consensus       171 LDiGcG~G~~~~~l~~~g~~---~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD~V~~~~  245 (319)
                      ||||+..|..+..+++....   .+++++|+.+. .+.+++.+++.  ....+++++.++..+.  .+..+++|+|+.-.
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~--~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg   77 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKA--GLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG   77 (106)
T ss_dssp             --------------------------EEEESS-------------G--GG-BTEEEEES-THHHHHHHHH--EEEEEEES
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhc--CCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC
Confidence            69999999988877765322   26999999994 22222222221  1345799999998653  23357999998753


Q ss_pred             cccCCCCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988          246 ALHCWPSPSNAASVFSSSYSLLSICYLLQFR  276 (319)
Q Consensus       246 vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~  276 (319)
                      .  |  +.+.....+..+++.+.++|++++.
T Consensus        78 ~--H--~~~~~~~dl~~~~~~l~~ggviv~d  104 (106)
T PF13578_consen   78 D--H--SYEAVLRDLENALPRLAPGGVIVFD  104 (106)
T ss_dssp             -------HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             C--C--CHHHHHHHHHHHHHHcCCCeEEEEe
Confidence            1  2  3456677777788888888888874

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=96.54  E-value=0.0034  Score=47.96  Aligned_cols=33  Identities=24%  Similarity=0.349  Sum_probs=28.6

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCC
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFS  199 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s  199 (319)
                      .+....+|||||+|.+..-|.+.|.  .-.|+|.-
T Consensus        57 ~~~~~FVDlGCGNGLLV~IL~~EGy--~G~GiD~R   89 (112)
T PF07757_consen   57 QKFQGFVDLGCGNGLLVYILNSEGY--PGWGIDAR   89 (112)
T ss_pred             CCCCceEEccCCchHHHHHHHhCCC--Cccccccc
Confidence            3566899999999999999999988  88899973

; GO: 0008168 methyltransferase activity

>PRK09678 DNA-binding transcriptional regulator; Provisional

Probab=96.42  E-value=0.0019  Score=45.80  Aligned_cols=48  Identities=19%  Similarity=0.452  Sum_probs=33.2

Q ss_pred             eeeccCCCccccccCCCCCcccceecCceeeC--ccCCccccCCceeeecc
Q 020988           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCR--KCDKTYSSKDNYLDLTV  108 (319)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~--~Cg~~f~~~~g~~~~~~  108 (319)
                      |+.||.|++.........++.+ ..+.+..|.  +||++|...+.+...+.
T Consensus         1 mm~CP~Cg~~a~irtSr~~s~~-~~~~Y~qC~N~eCg~tF~t~es~s~tis   50 (72)
T PRK09678          1 MFHCPLCQHAAHARTSRYITDT-TKERYHQCQNVNCSATFITYESVQRYIV   50 (72)
T ss_pred             CccCCCCCCccEEEEChhcChh-hheeeeecCCCCCCCEEEEEEEEEEEEc
Confidence            5789999996543333333333 455788998  89999977666666653

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=96.36  E-value=0.026  Score=51.27  Aligned_cols=104  Identities=15%  Similarity=0.045  Sum_probs=67.9

Q ss_pred             CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHH---hhcCc---------------------------
Q 020988          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFI---KQDNT---------------------------  215 (319)
Q Consensus       166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~---~~~~~---------------------------  215 (319)
                      ..-+||--|||.|+++..++..|+  .+-|=++|--|+-.-.=-+   +..|.                           
T Consensus       150 ~ki~iLvPGaGlGRLa~dla~~G~--~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD  227 (369)
T KOG2798|consen  150 TKIRILVPGAGLGRLAYDLACLGF--KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD  227 (369)
T ss_pred             cCceEEecCCCchhHHHHHHHhcc--cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcc
Confidence            456899999999999999999999  7777788887753322111   11100                           


Q ss_pred             -------cCCCCeEEEEcCCCCCC---CCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeE
Q 020988          216 -------ILTSNLALVRADVCRLP---FASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICY  271 (319)
Q Consensus       216 -------~~~~~i~~~~~d~~~lp---~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g  271 (319)
                             ..........||+.+.-   -..++||+|+.++.+.--.+.-+.+.-+..+|||||..-
T Consensus       228 ~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWi  293 (369)
T KOG2798|consen  228 IHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWI  293 (369)
T ss_pred             ccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEE
Confidence                   00112222335554431   123479999999888777777778888888888876543

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=96.19  E-value=0.042  Score=49.78  Aligned_cols=87  Identities=17%  Similarity=0.279  Sum_probs=70.1

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-  232 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-  232 (319)
                      ...+.+.|...+++..+|.==|.|..+..+.+.++ ..+++|+|-++.+++.|++++...    ..++.++.+++.++. 
T Consensus        12 l~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~----~~r~~~v~~~F~~l~~   87 (314)
T COG0275          12 LNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF----DGRVTLVHGNFANLAE   87 (314)
T ss_pred             HHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc----CCcEEEEeCcHHHHHH
Confidence            34566677788899999999999999999999975 356999999999999999998774    468999998876653 


Q ss_pred             ----CCCCCccEEEecc
Q 020988          233 ----FASGFVDAVHAGA  245 (319)
Q Consensus       233 ----~~~~~fD~V~~~~  245 (319)
                          ...+.+|-|+.--
T Consensus        88 ~l~~~~i~~vDGiL~DL  104 (314)
T COG0275          88 ALKELGIGKVDGILLDL  104 (314)
T ss_pred             HHHhcCCCceeEEEEec
Confidence                2245788887643

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=96.07  E-value=0.023  Score=49.98  Aligned_cols=92  Identities=18%  Similarity=0.148  Sum_probs=53.2

Q ss_pred             HHHHHHhhccCC--CeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHH---HHhhcCcc---CCCCeEEEEcC
Q 020988          156 KMAQEYFKSAQG--GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYD---FIKQDNTI---LTSNLALVRAD  227 (319)
Q Consensus       156 ~~l~~~l~~~~~--~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~---~~~~~~~~---~~~~i~~~~~d  227 (319)
                      +.+.+.....++  .+|||.=+|-|.-+..++..|.  +|+++|-|+-+....+.   +.......   ...+++++.+|
T Consensus        63 ~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~--~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d  140 (234)
T PF04445_consen   63 DPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGC--KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGD  140 (234)
T ss_dssp             SHHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-
T ss_pred             cHHHHHhCCCCCCCCEEEECCCcchHHHHHHHccCC--eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCC
Confidence            345555655544  4899999999999988888776  99999999977555443   33221000   01379999999


Q ss_pred             CCC-CCCCCCCccEEEecccccC
Q 020988          228 VCR-LPFASGFVDAVHAGAALHC  249 (319)
Q Consensus       228 ~~~-lp~~~~~fD~V~~~~vl~h  249 (319)
                      ..+ ++.++.+||+|+.--.+.|
T Consensus       141 ~~~~L~~~~~s~DVVY~DPMFp~  163 (234)
T PF04445_consen  141 ALEYLRQPDNSFDVVYFDPMFPE  163 (234)
T ss_dssp             CCCHCCCHSS--SEEEE--S---
T ss_pred             HHHHHhhcCCCCCEEEECCCCCC
Confidence            877 5555789999999777776

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>TIGR01206 lysW lysine biosynthesis protein LysW

Probab=96.03  E-value=0.0082  Score=40.08  Aligned_cols=31  Identities=23%  Similarity=0.522  Sum_probs=23.4

Q ss_pred             eeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      ++.||.|++.+...+.  .     ....+.|+.||..+
T Consensus         2 ~~~CP~CG~~iev~~~--~-----~GeiV~Cp~CGael   32 (54)
T TIGR01206         2 QFECPDCGAEIELENP--E-----LGELVICDECGAEL   32 (54)
T ss_pred             ccCCCCCCCEEecCCC--c-----cCCEEeCCCCCCEE
Confidence            4689999998866542  1     13567999999999

This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=95.96  E-value=0.0039  Score=38.31  Aligned_cols=35  Identities=20%  Similarity=0.549  Sum_probs=23.2

Q ss_pred             eeeccCCCccccccCCCCCcccceecCceeeCccCCccc
Q 020988           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (319)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~   98 (319)
                      ..+||.|+..+...+.. +.   .....++|+.|++.|.
T Consensus         2 ~i~CP~C~~~f~v~~~~-l~---~~~~~vrC~~C~~~f~   36 (37)
T PF13719_consen    2 IITCPNCQTRFRVPDDK-LP---AGGRKVRCPKCGHVFR   36 (37)
T ss_pred             EEECCCCCceEEcCHHH-cc---cCCcEEECCCCCcEee
Confidence            46899999976543320 10   1125789999999984

>PRK11524 putative methyltransferase; Provisional

Probab=95.90  E-value=0.035  Score=50.57  Aligned_cols=56  Identities=14%  Similarity=0.127  Sum_probs=46.6

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhh
Q 020988          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ  212 (319)
Q Consensus       154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~  212 (319)
                      ..+.+.... ..+|+.|||-=+|+|..+.++.+.+.  +.+|+|++++.++.|++|+..
T Consensus       197 L~erlI~~~-S~~GD~VLDPF~GSGTT~~AA~~lgR--~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        197 LLKRIILAS-SNPGDIVLDPFAGSFTTGAVAKASGR--KFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             HHHHHHHHh-CCCCCEEEECCCCCcHHHHHHHHcCC--CEEEEeCCHHHHHHHHHHHHh
Confidence            344444443 36799999999999999999988876  999999999999999999853

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=95.85  E-value=0.0046  Score=34.74  Aligned_cols=24  Identities=25%  Similarity=0.647  Sum_probs=18.5

Q ss_pred             eccCCCccccccCCCCCcccceecCceeeCccCCccc
Q 020988           62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (319)
Q Consensus        62 ~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~   98 (319)
                      .||.|+.....             ....|+.||+.|.
T Consensus         2 ~CP~C~~~V~~-------------~~~~Cp~CG~~F~   25 (26)
T PF10571_consen    2 TCPECGAEVPE-------------SAKFCPHCGYDFE   25 (26)
T ss_pred             cCCCCcCCchh-------------hcCcCCCCCCCCc
Confidence            59999996643             3358999999883

Several members are annotated as putative helicases.

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=95.85  E-value=0.041  Score=54.07  Aligned_cols=145  Identities=15%  Similarity=0.053  Sum_probs=96.6

Q ss_pred             chhhHHhHHhHHHhhh---h--CCCCCcHHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCC----CCeEEEEeCC
Q 020988          129 PFVSFLYERGWRQNFN---R--SGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT----YSGVVALDFS  199 (319)
Q Consensus       129 ~~~s~~~~~~w~~~~~---~--~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~----~~~v~gvD~s  199 (319)
                      +.+...|+...++...   +  ..|+.|.+..+.+.+.+.+.+..+|+|-.||+|.++....+...    ...++|.|++
T Consensus       144 d~~G~~yE~ll~~fa~~~~k~~GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~  223 (489)
T COG0286         144 DLFGDAYEYLLRKFAEAEGKEAGEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEIN  223 (489)
T ss_pred             cchhHHHHHHHHHHHHhcCCCCCccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCC
Confidence            3445555544333222   2  45889999999999999877778999999999998877766532    2579999999


Q ss_pred             HHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC-----CCCCccEEEeccccc---CCC--------------------
Q 020988          200 ENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-----ASGFVDAVHAGAALH---CWP--------------------  251 (319)
Q Consensus       200 ~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-----~~~~fD~V~~~~vl~---h~~--------------------  251 (319)
                      +.....|+-+.--++...  ++....+|...-|.     ....||.|+++--+.   +..                    
T Consensus       224 ~~t~~l~~mN~~lhgi~~--~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (489)
T COG0286         224 DTTYRLAKMNLILHGIEG--DANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTK  301 (489)
T ss_pred             HHHHHHHHHHHHHhCCCc--cccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCC
Confidence            999999998875543211  33444554433332     236799988854221   110                    


Q ss_pred             -CH-HHHHHHHHHhhcCCCeeEEEEe
Q 020988          252 -SP-SNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       252 -d~-~~~l~el~rvlk~g~~~g~~~~  275 (319)
                       .. ...++.+...++|++..+++++
T Consensus       302 ~~~~~af~~h~~~~l~~~g~aaivl~  327 (489)
T COG0286         302 NSADLAFLQHILYKLKPGGRAAIVLP  327 (489)
T ss_pred             CchHHHHHHHHHHhcCCCceEEEEec
Confidence             01 3557888888898877777766

>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues

Probab=95.77  E-value=0.0051  Score=35.78  Aligned_cols=27  Identities=19%  Similarity=0.578  Sum_probs=14.9

Q ss_pred             eeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      -.||.|++.....+.          ..+.|+.|++.+
T Consensus         3 p~Cp~C~se~~y~D~----------~~~vCp~C~~ew   29 (30)
T PF08274_consen    3 PKCPLCGSEYTYEDG----------ELLVCPECGHEW   29 (30)
T ss_dssp             ---TTT-----EE-S----------SSEEETTTTEEE
T ss_pred             CCCCCCCCcceeccC----------CEEeCCcccccC
Confidence            479999997766543          789999999875

The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.

>PRK00420 hypothetical protein; Validated

Probab=95.73  E-value=0.0063  Score=47.02  Aligned_cols=31  Identities=29%  Similarity=0.539  Sum_probs=23.8

Q ss_pred             eeccCCCccccccCCCCCcccceecCceeeCccCCccccCC
Q 020988           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKD  101 (319)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~~~  101 (319)
                      -.||+||.||.....          +...|++||..+....
T Consensus        24 ~~CP~Cg~pLf~lk~----------g~~~Cp~Cg~~~~v~~   54 (112)
T PRK00420         24 KHCPVCGLPLFELKD----------GEVVCPVHGKVYIVKS   54 (112)
T ss_pred             CCCCCCCCcceecCC----------CceECCCCCCeeeecc
Confidence            579999999987332          6789999999775443

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=95.70  E-value=0.035  Score=49.58  Aligned_cols=80  Identities=14%  Similarity=0.201  Sum_probs=51.9

Q ss_pred             CCeEEEEcCCcChHHHHHHhhCC--------CCeEEEEeCCHHHHHHHHHHHhhcC---ccCCCCeEEEEcCCCCCCCCC
Q 020988          167 GGLLVDVSCGSGLFSRKFAKSGT--------YSGVVALDFSENMLRQCYDFIKQDN---TILTSNLALVRADVCRLPFAS  235 (319)
Q Consensus       167 ~~~VLDiGcG~G~~~~~l~~~g~--------~~~v~gvD~s~~~l~~a~~~~~~~~---~~~~~~i~~~~~d~~~lp~~~  235 (319)
                      +-+|+|+|+|+|.++..+++...        ..+++-||+|+.+.+..++++....   .....++.+ ..++.+.|   
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w-~~~l~~~p---   94 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW-LDDLEEVP---   94 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-ESSGGCS----
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-hhhhhccc---
Confidence            47999999999999988877632        3589999999999999888875520   001234555 23444444   


Q ss_pred             CCccEEEecccccCCC
Q 020988          236 GFVDAVHAGAALHCWP  251 (319)
Q Consensus       236 ~~fD~V~~~~vl~h~~  251 (319)
                       ..-+|+++.++..+|
T Consensus        95 -~~~~iiaNE~~DAlP  109 (252)
T PF02636_consen   95 -FPGFIIANELFDALP  109 (252)
T ss_dssp             -CCEEEEEESSGGGS-
T ss_pred             -CCEEEEEeeehhcCc
Confidence             345777777777765

; PDB: 4F3N_A 1ZKD_B.

>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]

Probab=95.58  E-value=0.0065  Score=48.03  Aligned_cols=25  Identities=36%  Similarity=0.756  Sum_probs=21.9

Q ss_pred             eccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988           62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        62 ~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      .||.||.||+.++           +.+.|+.|++..
T Consensus        30 hCp~Cg~PLF~Kd-----------G~v~CPvC~~~~   54 (131)
T COG1645          30 HCPKCGTPLFRKD-----------GEVFCPVCGYRE   54 (131)
T ss_pred             hCcccCCcceeeC-----------CeEECCCCCceE
Confidence            5999999999965           778999999866

>PRK13699 putative methylase; Provisional

Probab=95.55  E-value=0.064  Score=47.23  Aligned_cols=59  Identities=19%  Similarity=0.256  Sum_probs=47.8

Q ss_pred             cHHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhh
Q 020988          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ  212 (319)
Q Consensus       151 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~  212 (319)
                      |.+..+.+.... ..+++.|||-=||+|..+.++.+.+.  +.+|+|+++...+.+.+++..
T Consensus       149 P~~l~~~~i~~~-s~~g~~vlDpf~Gsgtt~~aa~~~~r--~~~g~e~~~~y~~~~~~r~~~  207 (227)
T PRK13699        149 PVTSLQPLIESF-THPNAIVLDPFAGSGSTCVAALQSGR--RYIGIELLEQYHRAGQQRLAA  207 (227)
T ss_pred             cHHHHHHHHHHh-CCCCCEEEeCCCCCCHHHHHHHHcCC--CEEEEecCHHHHHHHHHHHHH
Confidence            344444444433 35789999999999999999888876  999999999999999999865

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=95.55  E-value=0.048  Score=47.17  Aligned_cols=55  Identities=16%  Similarity=0.222  Sum_probs=41.2

Q ss_pred             cHHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHH
Q 020988          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYD  208 (319)
Q Consensus       151 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~  208 (319)
                      |.+..+.+.... ..++..|||.=||+|..+.++.+.+.  +.+|+|+++..++.|++
T Consensus       177 P~~l~~~lI~~~-t~~gdiVlDpF~GSGTT~~aa~~l~R--~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  177 PVELIERLIKAS-TNPGDIVLDPFAGSGTTAVAAEELGR--RYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             -HHHHHHHHHHH-S-TT-EEEETT-TTTHHHHHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred             CHHHHHHHHHhh-hccceeeehhhhccChHHHHHHHcCC--eEEEEeCCHHHHHHhcC
Confidence            344455555554 35789999999999999999999877  99999999999998874

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=95.37  E-value=0.075  Score=45.81  Aligned_cols=108  Identities=12%  Similarity=0.076  Sum_probs=49.8

Q ss_pred             HHHHHhhccCCCeEEEEcCCcChHHHHHHhh----CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC
Q 020988          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (319)
Q Consensus       157 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~----g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (319)
                      .+++++-..++..|+|+|.-.|.-+..+++.    +...+|+|+|++.......  .++.  ....++|++++||..+..
T Consensus        23 ~~qeli~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~--a~e~--hp~~~rI~~i~Gds~d~~   98 (206)
T PF04989_consen   23 AYQELIWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK--AIES--HPMSPRITFIQGDSIDPE   98 (206)
T ss_dssp             HHHHHHHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG------TTEEEEES-SSSTH
T ss_pred             HHHHHHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchH--HHhh--ccccCceEEEECCCCCHH
Confidence            4455555567799999999999766655543    3567999999965332211  1111  012479999999986642


Q ss_pred             ----CC--CCCccE-EEecccccCCCCHHHHHHHHHHhhcCCC
Q 020988          233 ----FA--SGFVDA-VHAGAALHCWPSPSNAASVFSSSYSLLS  268 (319)
Q Consensus       233 ----~~--~~~fD~-V~~~~vl~h~~d~~~~l~el~rvlk~g~  268 (319)
                          ..  ....+- +++-.+=|...+....++....++++|.
T Consensus        99 ~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~  141 (206)
T PF04989_consen   99 IVDQVRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGS  141 (206)
T ss_dssp             HHHTSGSS----SSEEEEESS----SSHHHHHHHHHHT--TT-
T ss_pred             HHHHHHHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCC
Confidence                11  112232 2233333333344455566666766665

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=95.19  E-value=0.07  Score=45.31  Aligned_cols=108  Identities=16%  Similarity=0.197  Sum_probs=69.9

Q ss_pred             HHhhccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHH----------HHHHHHHHhhcCccCCCCeEEEEcCC
Q 020988          160 EYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENM----------LRQCYDFIKQDNTILTSNLALVRADV  228 (319)
Q Consensus       160 ~~l~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~----------l~~a~~~~~~~~~~~~~~i~~~~~d~  228 (319)
                      .+....++.+|+|+=.|.|+|++-+... ++...|++.-+.+..          -..+++.       ...|...+-.+.
T Consensus        42 ~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~-------~~aN~e~~~~~~  114 (238)
T COG4798          42 AFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREP-------VYANVEVIGKPL  114 (238)
T ss_pred             EEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhh-------hhhhhhhhCCcc
Confidence            3446688999999999999999998877 565678777665431          1111111       133555555555


Q ss_pred             CCCCCCCCCccEEEeccc---cc----CCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          229 CRLPFASGFVDAVHAGAA---LH----CWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       229 ~~lp~~~~~fD~V~~~~v---l~----h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      ..++ ..+..|+++....   +|    |-....++.+++++.|||||...+..-
T Consensus       115 ~A~~-~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH  167 (238)
T COG4798         115 VALG-APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDH  167 (238)
T ss_pred             cccC-CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEec
Confidence            5555 3456677665322   22    222346778899999999998887755

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=95.14  E-value=0.013  Score=35.73  Aligned_cols=34  Identities=18%  Similarity=0.545  Sum_probs=22.3

Q ss_pred             eeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      .+.||.|+..+...+. .+..   ....++|++|+++|
T Consensus         2 ~i~Cp~C~~~y~i~d~-~ip~---~g~~v~C~~C~~~f   35 (36)
T PF13717_consen    2 IITCPNCQAKYEIDDE-KIPP---KGRKVRCSKCGHVF   35 (36)
T ss_pred             EEECCCCCCEEeCCHH-HCCC---CCcEEECCCCCCEe
Confidence            4689999996654332 1111   12468999999987

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=95.11  E-value=0.18  Score=45.72  Aligned_cols=102  Identities=14%  Similarity=0.124  Sum_probs=71.2

Q ss_pred             eEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC--CCCccEEEeccc
Q 020988          169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA--SGFVDAVHAGAA  246 (319)
Q Consensus       169 ~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~--~~~fD~V~~~~v  246 (319)
                      +++|+-||.|.+...+.+.|. ..+.++|+++.+++..+.+...         .++.+|+.++...  ...+|+|+...-
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~-~~v~a~e~~~~a~~~~~~N~~~---------~~~~~Di~~~~~~~~~~~~D~l~~gpP   71 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGF-EIVAANEIDKSAAETYEANFPN---------KLIEGDITKIDEKDFIPDIDLLTGGFP   71 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCC-EEEEEEeCCHHHHHHHHHhCCC---------CCccCccccCchhhcCCCCCEEEeCCC
Confidence            689999999999998988874 4688999999999888876521         1566788776532  357999997541


Q ss_pred             cc---------CCCCH-HHHHHHHHHhhcCCCeeEEEEeeccch
Q 020988          247 LH---------CWPSP-SNAASVFSSSYSLLSICYLLQFRYTKI  280 (319)
Q Consensus       247 l~---------h~~d~-~~~l~el~rvlk~g~~~g~~~~~~~~~  280 (319)
                      -.         ...|+ ..++.++.++++...|-.+++=.+..+
T Consensus        72 Cq~fS~ag~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~g~  115 (275)
T cd00315          72 CQPFSIAGKRKGFEDTRGTLFFEIIRILKEKKPKYFLLENVKGL  115 (275)
T ss_pred             ChhhhHHhhcCCCCCchHHHHHHHHHHHHhcCCCEEEEEcCcch
Confidence            11         12233 346777888888777776655544443

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.11  E-value=0.0048  Score=50.26  Aligned_cols=56  Identities=16%  Similarity=-0.002  Sum_probs=45.0

Q ss_pred             CeEEEEcCCCCCCCCCCCccEEEecccccCCCCH--HHHHHHHHHhhcCCCeeEEEEe
Q 020988          220 NLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       220 ~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~--~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      .+++++-.....+|.+++.|+|++.+|+||+.-.  ..++++.+|+|||+|.+-+-+.
T Consensus        30 ~vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvP   87 (185)
T COG4627          30 EVDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVP   87 (185)
T ss_pred             ccchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcC
Confidence            4555554455678999999999999999999744  3678999999999998877766

>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C

Probab=95.07  E-value=0.014  Score=35.08  Aligned_cols=30  Identities=37%  Similarity=0.699  Sum_probs=16.0

Q ss_pred             ccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988           63 CPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        63 CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      ||.||++|....+.+.     .+..+.|++||.+.
T Consensus         3 C~~CG~~l~~~ip~gd-----~r~R~vC~~Cg~Ih   32 (34)
T PF14803_consen    3 CPQCGGPLERRIPEGD-----DRERLVCPACGFIH   32 (34)
T ss_dssp             -TTT--B-EEE--TT------SS-EEEETTTTEEE
T ss_pred             cccccChhhhhcCCCC-----CccceECCCCCCEE
Confidence            9999999876544222     23567899999763

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=94.91  E-value=0.073  Score=50.50  Aligned_cols=60  Identities=15%  Similarity=0.403  Sum_probs=48.6

Q ss_pred             eEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC
Q 020988          169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (319)
Q Consensus       169 ~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (319)
                      .|||||.|||.++..+.+.|. ..|++++.-..|.+.|++-..+++  ..++|.++.--..++
T Consensus        69 ~vLdigtGTGLLSmMAvraga-D~vtA~EvfkPM~d~arkI~~kng--~SdkI~vInkrStev  128 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVRAGA-DSVTACEVFKPMVDLARKIMHKNG--MSDKINVINKRSTEV  128 (636)
T ss_pred             EEEEccCCccHHHHHHHHhcC-CeEEeehhhchHHHHHHHHHhcCC--Cccceeeecccccee
Confidence            589999999999999999884 579999999999999999877654  567777766544443

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=94.90  E-value=0.46  Score=40.77  Aligned_cols=102  Identities=14%  Similarity=0.105  Sum_probs=72.5

Q ss_pred             hccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC---CCCCCcc
Q 020988          163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFVD  239 (319)
Q Consensus       163 ~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~fD  239 (319)
                      +..++.+||=+|..+|....++++-.....++++++|+.+.+..-...++.     +|+-=+.+|+....   .--+..|
T Consensus        73 pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R-----~Ni~PIL~DA~~P~~Y~~~Ve~VD  147 (231)
T COG1889          73 PIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR-----PNIIPILEDARKPEKYRHLVEKVD  147 (231)
T ss_pred             CcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC-----CCceeeecccCCcHHhhhhccccc
Confidence            457899999999999999999998865678999999998877666555443     57766778886532   1135689


Q ss_pred             EEEecccccCCCCHH---HHHHHHHHhhcCCCeeEEEE
Q 020988          240 AVHAGAALHCWPSPS---NAASVFSSSYSLLSICYLLQ  274 (319)
Q Consensus       240 ~V~~~~vl~h~~d~~---~~l~el~rvlk~g~~~g~~~  274 (319)
                      +|+.-     +..|.   -+...+...||++|...+.+
T Consensus       148 viy~D-----VAQp~Qa~I~~~Na~~FLk~~G~~~i~i  180 (231)
T COG1889         148 VIYQD-----VAQPNQAEILADNAEFFLKKGGYVVIAI  180 (231)
T ss_pred             EEEEe-----cCCchHHHHHHHHHHHhcccCCeEEEEE
Confidence            99763     33333   33456677888887554443

>PHA00626 hypothetical protein

Probab=94.88  E-value=0.018  Score=38.13  Aligned_cols=33  Identities=21%  Similarity=0.572  Sum_probs=21.3

Q ss_pred             eeccCCCcc-ccccCCCCCcccceecCceeeCccCCccc
Q 020988           61 FSCPICYEP-LIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (319)
Q Consensus        61 l~CP~C~~~-l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~   98 (319)
                      +.||.|++. ..+.+.  .   .-.+..+.|+.||+.|.
T Consensus         1 m~CP~CGS~~Ivrcg~--c---r~~snrYkCkdCGY~ft   34 (59)
T PHA00626          1 MSCPKCGSGNIAKEKT--M---RGWSDDYVCCDCGYNDS   34 (59)
T ss_pred             CCCCCCCCceeeeece--e---cccCcceEcCCCCCeec
Confidence            369999994 443221  0   00136789999999983

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=94.65  E-value=0.063  Score=51.93  Aligned_cols=93  Identities=15%  Similarity=0.087  Sum_probs=57.1

Q ss_pred             CCCeEEEEcCCcChHHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCC-CCCCCCCCCccEEEe
Q 020988          166 QGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CRLPFASGFVDAVHA  243 (319)
Q Consensus       166 ~~~~VLDiGcG~G~~~~~l~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~-~~lp~~~~~fD~V~~  243 (319)
                      .=..|+|..+|.|.|+.+|.+.. +--+|+-+ ..++.+....+|-         -+-.. .|- +.++.-..+||+|++
T Consensus       365 ~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vIydRG---------LIG~y-hDWCE~fsTYPRTYDLlHA  433 (506)
T PF03141_consen  365 RIRNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVIYDRG---------LIGVY-HDWCEAFSTYPRTYDLLHA  433 (506)
T ss_pred             ceeeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhhhhcc---------cchhc-cchhhccCCCCcchhheeh
Confidence            34579999999999999997752 11122222 2233333333320         01111 121 334544689999999


Q ss_pred             cccccCCCC---HHHHHHHHHHhhcCCCe
Q 020988          244 GAALHCWPS---PSNAASVFSSSYSLLSI  269 (319)
Q Consensus       244 ~~vl~h~~d---~~~~l~el~rvlk~g~~  269 (319)
                      .+++.+..+   .+..+-||.|+|+|+|.
T Consensus       434 ~~lfs~~~~rC~~~~illEmDRILRP~G~  462 (506)
T PF03141_consen  434 DGLFSLYKDRCEMEDILLEMDRILRPGGW  462 (506)
T ss_pred             hhhhhhhcccccHHHHHHHhHhhcCCCce
Confidence            998887764   46778899999888764

; GO: 0008168 methyltransferase activity

>PHA01634 hypothetical protein

Probab=94.54  E-value=0.29  Score=38.78  Aligned_cols=47  Identities=17%  Similarity=0.106  Sum_probs=41.6

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhh
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ  212 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~  212 (319)
                      ..+.+|+|||.+-|.-+..++-.|. ..|+++++++...+..++..+.
T Consensus        27 vk~KtV~dIGA~iGdSaiYF~l~GA-K~Vva~E~~~kl~k~~een~k~   73 (156)
T PHA01634         27 VYQRTIQIVGADCGSSALYFLLRGA-SFVVQYEKEEKLRKKWEEVCAY   73 (156)
T ss_pred             ecCCEEEEecCCccchhhHHhhcCc-cEEEEeccCHHHHHHHHHHhhh
Confidence            4689999999999999999988874 6899999999999999987754

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=94.47  E-value=0.2  Score=40.53  Aligned_cols=82  Identities=17%  Similarity=0.227  Sum_probs=48.7

Q ss_pred             eEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC--CCCCCccEEEecccc-cC-----CCCHHHHHHHHHHh
Q 020988          192 GVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVHAGAAL-HC-----WPSPSNAASVFSSS  263 (319)
Q Consensus       192 ~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~V~~~~vl-~h-----~~d~~~~l~el~rv  263 (319)
                      +|+|+|+-+++++..++++++.+  ...++.++..+=+++.  .+++++|+|+.+... -.     +..++..+..+...
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~--~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~a   78 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAG--LEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAA   78 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT---GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcC--CCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHH
Confidence            58999999999999999998864  3347999887655554  233589999886422 11     22345555555554


Q ss_pred             hcCCCeeEEEEe
Q 020988          264 YSLLSICYLLQF  275 (319)
Q Consensus       264 lk~g~~~g~~~~  275 (319)
                      ++.+.++|++.+
T Consensus        79 l~lL~~gG~i~i   90 (140)
T PF06962_consen   79 LELLKPGGIITI   90 (140)
T ss_dssp             HHHEEEEEEEEE
T ss_pred             HHhhccCCEEEE
Confidence            444444444433

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors []

Probab=94.43  E-value=0.034  Score=33.17  Aligned_cols=30  Identities=23%  Similarity=0.371  Sum_probs=23.8

Q ss_pred             CeeeccCCCccccc-cCCCCCcccceecCceeeCccCCccc
Q 020988           59 DLFSCPICYEPLIR-KGPTGLTLGAIYRSGFKCRKCDKTYS   98 (319)
Q Consensus        59 ~~l~CP~C~~~l~~-~~~~~~~~~~i~~~~~~C~~Cg~~f~   98 (319)
                      ++-.|+.|++++.. ...          ++..|..||.+|+
T Consensus         2 ~~~~C~~C~~~~i~~~~~----------~~~~C~~Cg~~~~   32 (33)
T PF08792_consen    2 NLKKCSKCGGNGIVNKED----------DYEVCIFCGSSFP   32 (33)
T ss_pred             CceEcCCCCCCeEEEecC----------CeEEcccCCcEee
Confidence            35679999998766 443          7889999999885

>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]

Probab=94.34  E-value=0.026  Score=41.09  Aligned_cols=30  Identities=27%  Similarity=0.704  Sum_probs=22.9

Q ss_pred             CeeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      +...||.|+.+-....         ..+++.|..||..|
T Consensus        34 ~~~~Cp~C~~~~VkR~---------a~GIW~C~kCg~~f   63 (89)
T COG1997          34 AKHVCPFCGRTTVKRI---------ATGIWKCRKCGAKF   63 (89)
T ss_pred             cCCcCCCCCCcceeee---------ccCeEEcCCCCCee
Confidence            5689999999733222         24899999999988

>PRK00464 nrdR transcriptional regulator NrdR; Validated

Probab=94.29  E-value=0.026  Score=46.39  Aligned_cols=38  Identities=29%  Similarity=0.597  Sum_probs=23.4

Q ss_pred             eeccCCCccccc-cCCCCCccc-ceecCceeeCccCCcccc
Q 020988           61 FSCPICYEPLIR-KGPTGLTLG-AIYRSGFKCRKCDKTYSS   99 (319)
Q Consensus        61 l~CP~C~~~l~~-~~~~~~~~~-~i~~~~~~C~~Cg~~f~~   99 (319)
                      +.||-|+++-.. ........+ .+. ...+|++||.+|..
T Consensus         1 m~cp~c~~~~~~~~~s~~~~~~~~~~-~~~~c~~c~~~f~~   40 (154)
T PRK00464          1 MRCPFCGHPDTRVIDSRPAEDGNAIR-RRRECLACGKRFTT   40 (154)
T ss_pred             CcCCCCCCCCCEeEeccccCCCCcee-eeeeccccCCcceE
Confidence            479999986522 222222233 343 34899999999943

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=94.25  E-value=0.59  Score=41.55  Aligned_cols=101  Identities=13%  Similarity=0.033  Sum_probs=61.6

Q ss_pred             CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCC---CeEE--E-EcCCCCCCCCCCC-c
Q 020988          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTS---NLAL--V-RADVCRLPFASGF-V  238 (319)
Q Consensus       166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~---~i~~--~-~~d~~~lp~~~~~-f  238 (319)
                      ...+|||+|.|+|..+..++... ..+|+-.|+..-. .....+...++.....   .+.+  + .++.....+..+. |
T Consensus        86 ~~~~vlELGsGtglvG~~aa~~~-~~~v~ltD~~~~~-~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~  163 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGILAALLL-GAEVVLTDLPKVV-ENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPF  163 (248)
T ss_pred             cceeEEEecCCccHHHHHHHHHh-cceeccCCchhhH-HHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcc
Confidence            35679999999997776666643 3488888875533 3322222221111111   2222  2 2222222222334 9


Q ss_pred             cEEEecccccCCCCHHHHHHHHHHhhcCCC
Q 020988          239 DAVHAGAALHCWPSPSNAASVFSSSYSLLS  268 (319)
Q Consensus       239 D~V~~~~vl~h~~d~~~~l~el~rvlk~g~  268 (319)
                      |+|++..++.+...++.++.-+..++...+
T Consensus       164 DlilasDvvy~~~~~e~Lv~tla~ll~~~~  193 (248)
T KOG2793|consen  164 DLILASDVVYEEESFEGLVKTLAFLLAKDG  193 (248)
T ss_pred             cEEEEeeeeecCCcchhHHHHHHHHHhcCC
Confidence            999999999998888888888888877777

>PF04606 Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: IPR007684 This entry is represented by Bacteriophage P2, Ogr

Probab=94.20  E-value=0.026  Score=36.59  Aligned_cols=39  Identities=18%  Similarity=0.336  Sum_probs=24.4

Q ss_pred             eccCCCccccccCCCCCcccceecCceeeCc--cCCccccCC
Q 020988           62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRK--CDKTYSSKD  101 (319)
Q Consensus        62 ~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~--Cg~~f~~~~  101 (319)
                      .||.||+.........+ ...+...+..|.|  ||+.|....
T Consensus         1 ~CP~Cg~~a~ir~S~~~-s~~~~~~Y~qC~N~~Cg~tfv~~~   41 (47)
T PF04606_consen    1 RCPHCGSKARIRTSRQL-SPLTRELYCQCTNPECGHTFVANL   41 (47)
T ss_pred             CcCCCCCeeEEEEchhh-CcceEEEEEEECCCcCCCEEEEEE
Confidence            59999996533322112 2233446889999  999995443

The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a viral family of phage zinc-binding transcriptional activators, which also contains cryptic members in some bacterial genomes []. The P4 phage delta protein contains two such domains attached covalently, while the P2 phage Ogr proteins possess one domain but function as dimers. All the members of this family have the following consensus sequence: C-X(2)-C-X(3)-A-(X)2-R-X(15)-C-X(4)-C-X(3)-F [].; GO: 0006355 regulation of transcription, DNA-dependent

>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[]

Probab=94.15  E-value=0.027  Score=34.29  Aligned_cols=27  Identities=19%  Similarity=0.554  Sum_probs=21.2

Q ss_pred             eeeccCCCccccccCCCCCcccceecCceeeCccCCc
Q 020988           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT   96 (319)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~   96 (319)
                      -..|++|++.+....+          +.+.|..|||+
T Consensus         8 ~~~C~~C~~~~~~~~d----------G~~yC~~cG~~   34 (36)
T PF11781_consen    8 NEPCPVCGSRWFYSDD----------GFYYCDRCGHQ   34 (36)
T ss_pred             CCcCCCCCCeEeEccC----------CEEEhhhCceE
Confidence            3569999998555543          78999999986

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=94.03  E-value=0.088  Score=48.66  Aligned_cols=114  Identities=15%  Similarity=0.035  Sum_probs=64.4

Q ss_pred             HHHHhhccCCCeEEEEcCCcChHHHHHHhhCCC-CeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCC----CCCC
Q 020988          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV----CRLP  232 (319)
Q Consensus       158 l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~----~~lp  232 (319)
                      +....+...+.+|||+|.|.|.-+.++....|. ..++-++.|+..-+........-   ......+...|+    ..+|
T Consensus       105 L~~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv---~t~~td~r~s~vt~dRl~lp  181 (484)
T COG5459         105 LQKRVPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENV---STEKTDWRASDVTEDRLSLP  181 (484)
T ss_pred             HHHhCCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhc---ccccCCCCCCccchhccCCC
Confidence            333334456788999999999876666555442 36788888887666655433221   111122222233    2333


Q ss_pred             CCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          233 FASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      . ...|++|+..+-|-|..+.....-.+.+++....++|.+++
T Consensus       182 ~-ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVi  223 (484)
T COG5459         182 A-ADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVI  223 (484)
T ss_pred             c-cceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEE
Confidence            2 35678887777666665555444445555554555555555

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=93.95  E-value=0.029  Score=34.51  Aligned_cols=35  Identities=20%  Similarity=0.476  Sum_probs=21.7

Q ss_pred             eeeccCCCccccccCCCCCcccceecCceeeCccCCccc
Q 020988           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (319)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~   98 (319)
                      .+.||.|+..+..... .+..   ....++|++|++.|.
T Consensus         2 ~~~CP~C~~~~~v~~~-~~~~---~~~~v~C~~C~~~~~   36 (38)
T TIGR02098         2 RIQCPNCKTSFRVVDS-QLGA---NGGKVRCGKCGHVWY   36 (38)
T ss_pred             EEECCCCCCEEEeCHH-HcCC---CCCEEECCCCCCEEE
Confidence            3689999996544321 0000   013589999999873

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=93.91  E-value=0.026  Score=35.07  Aligned_cols=37  Identities=14%  Similarity=0.263  Sum_probs=18.1

Q ss_pred             eeccCCCccccc-cCCCCCcccceecCceeeCccCCcc
Q 020988           61 FSCPICYEPLIR-KGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        61 l~CP~C~~~l~~-~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      +.||.|+..-.. ........++-..-.+.|.+|||.|
T Consensus         1 ~~Cp~Cg~~~a~~~~~Q~rsaDE~~T~fy~C~~C~~~w   38 (39)
T PF01096_consen    1 IKCPKCGHNEAVFFQIQTRSADEPMTLFYVCCNCGHRW   38 (39)
T ss_dssp             S--SSS-SSEEEEEEESSSSSSSSSEEEEEESSSTEEE
T ss_pred             CCCcCCCCCeEEEEEeeccCCCCCCeEEEEeCCCCCee
Confidence            469999983110 0111112222233578999999987

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....

>PRK00432 30S ribosomal protein S27ae; Validated

Probab=93.90  E-value=0.039  Score=36.29  Aligned_cols=33  Identities=21%  Similarity=0.462  Sum_probs=22.8

Q ss_pred             ccccCeeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988           55 ELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        55 ~~~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      .+....--||.|++.+....          .+.+.|..||.++
T Consensus        15 ~v~~~~~fCP~Cg~~~m~~~----------~~r~~C~~Cgyt~   47 (50)
T PRK00432         15 KVKRKNKFCPRCGSGFMAEH----------LDRWHCGKCGYTE   47 (50)
T ss_pred             EEEEccCcCcCCCcchhecc----------CCcEECCCcCCEE
Confidence            34445557999998633222          2678999999876

>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=93.86  E-value=0.035  Score=35.22  Aligned_cols=29  Identities=28%  Similarity=0.592  Sum_probs=19.1

Q ss_pred             eeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      +.||.|++.....+.        .++.+.|++||.+-
T Consensus         1 m~Cp~Cg~~~~~~D~--------~~g~~vC~~CG~Vl   29 (43)
T PF08271_consen    1 MKCPNCGSKEIVFDP--------ERGELVCPNCGLVL   29 (43)
T ss_dssp             ESBTTTSSSEEEEET--------TTTEEEETTT-BBE
T ss_pred             CCCcCCcCCceEEcC--------CCCeEECCCCCCEe
Confidence            579999996422221        13678999999864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.

>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains

Probab=93.75  E-value=0.049  Score=32.19  Aligned_cols=27  Identities=19%  Similarity=0.349  Sum_probs=15.4

Q ss_pred             eccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988           62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        62 ~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      -||.||++......         ....+|+.||+.+
T Consensus         5 fC~~CG~~t~~~~~---------g~~r~C~~Cg~~~   31 (32)
T PF09297_consen    5 FCGRCGAPTKPAPG---------GWARRCPSCGHEH   31 (32)
T ss_dssp             B-TTT--BEEE-SS---------SS-EEESSSS-EE
T ss_pred             ccCcCCccccCCCC---------cCEeECCCCcCEe
Confidence            49999998766543         2467899999864

; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.

>KOG1088 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.72  E-value=0.031  Score=42.91  Aligned_cols=26  Identities=8%  Similarity=0.363  Sum_probs=22.4

Q ss_pred             eecCceeeCccCCccccCCceeeecc
Q 020988           83 IYRSGFKCRKCDKTYSSKDNYLDLTV  108 (319)
Q Consensus        83 i~~~~~~C~~Cg~~f~~~~g~~~~~~  108 (319)
                      +..+.+.|++||+.|++.+|+++.+-
T Consensus        94 v~EG~l~CpetG~vfpI~~GIPNMLL  119 (124)
T KOG1088|consen   94 VIEGELVCPETGRVFPISDGIPNMLL  119 (124)
T ss_pred             hccceEecCCCCcEeecccCCccccc
Confidence            34478999999999999999999873

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=93.67  E-value=0.42  Score=44.59  Aligned_cols=100  Identities=13%  Similarity=0.121  Sum_probs=73.8

Q ss_pred             CCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC-CCCCccEEEecc
Q 020988          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-ASGFVDAVHAGA  245 (319)
Q Consensus       167 ~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-~~~~fD~V~~~~  245 (319)
                      ..+|||.=+|+|.=+..++...+..+|+.-|+|+.+++..+++++.+   ...+...+..|+..+=. ....||+|=   
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N---~~~~~~v~n~DAN~lm~~~~~~fd~ID---  126 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLN---SGEDAEVINKDANALLHELHRAFDVID---  126 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhc---CcccceeecchHHHHHHhcCCCccEEe---
Confidence            68999999999988877777766668999999999999999998764   13344555556544321 136899883   


Q ss_pred             cccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988          246 ALHCWPSPSNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       246 vl~h~~d~~~~l~el~rvlk~g~~~g~~  273 (319)
                       |.-+..|..++....+.++.+|..++-
T Consensus       127 -iDPFGSPaPFlDaA~~s~~~~G~l~vT  153 (380)
T COG1867         127 -IDPFGSPAPFLDAALRSVRRGGLLCVT  153 (380)
T ss_pred             -cCCCCCCchHHHHHHHHhhcCCEEEEE
Confidence             445556778888888887777766654

>PRK10220 hypothetical protein; Provisional

Probab=93.64  E-value=0.05  Score=41.33  Aligned_cols=31  Identities=19%  Similarity=0.574  Sum_probs=24.9

Q ss_pred             eeeccCCCccccccCCCCCcccceecCceeeCccCCccccC
Q 020988           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK  100 (319)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~~  100 (319)
                      +-.||.|++.......          ..+.|+.|+|.|...
T Consensus         3 lP~CP~C~seytY~d~----------~~~vCpeC~hEW~~~   33 (111)
T PRK10220          3 LPHCPKCNSEYTYEDN----------GMYICPECAHEWNDA   33 (111)
T ss_pred             CCcCCCCCCcceEcCC----------CeEECCcccCcCCcc
Confidence            4579999998876654          678999999999544

>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA

Probab=93.62  E-value=0.041  Score=41.82  Aligned_cols=31  Identities=19%  Similarity=0.501  Sum_probs=24.7

Q ss_pred             eeeccCCCccccccCCCCCcccceecCceeeCccCCccccC
Q 020988           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK  100 (319)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~~  100 (319)
                      +-.||.|++.......          ..+.|+.|+|.|...
T Consensus         2 lp~CP~C~seytY~dg----------~~~iCpeC~~EW~~~   32 (109)
T TIGR00686         2 LPPCPKCNSEYTYHDG----------TQLICPSCLYEWNEN   32 (109)
T ss_pred             CCcCCcCCCcceEecC----------CeeECcccccccccc
Confidence            3579999998876653          678999999999543

The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=93.46  E-value=0.072  Score=34.31  Aligned_cols=29  Identities=17%  Similarity=0.457  Sum_probs=22.3

Q ss_pred             eeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      .+.||.||..+.....         ...++|+.||..+
T Consensus         3 ~y~C~~CG~~~~~~~~---------~~~~~Cp~CG~~~   31 (46)
T PRK00398          3 EYKCARCGREVELDEY---------GTGVRCPYCGYRI   31 (46)
T ss_pred             EEECCCCCCEEEECCC---------CCceECCCCCCeE
Confidence            5899999998766542         1268999999876

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=93.43  E-value=0.3  Score=45.49  Aligned_cols=49  Identities=12%  Similarity=0.146  Sum_probs=40.2

Q ss_pred             ccCCCeEEEEcCCcChHHHHHHhhC--------CCCeEEEEeCCHHHHHHHHHHHhh
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFAKSG--------TYSGVVALDFSENMLRQCYDFIKQ  212 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~~~g--------~~~~v~gvD~s~~~l~~a~~~~~~  212 (319)
                      .+.+-.++|+|.|+|.++..+.+..        ...++.-|++|++..+.-+++++.
T Consensus        75 ~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~  131 (370)
T COG1565          75 RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA  131 (370)
T ss_pred             CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence            3445689999999999988887652        256899999999999988888865

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=93.42  E-value=1  Score=42.66  Aligned_cols=103  Identities=15%  Similarity=0.130  Sum_probs=66.4

Q ss_pred             hhccCCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC-C-----CC-
Q 020988          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-L-----PF-  233 (319)
Q Consensus       162 l~~~~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~-l-----p~-  233 (319)
                      ....++.+||.+|||. |..+..+++.....+++++|.+++..+.+++..         ...++...-.+ +     .+ 
T Consensus       180 ~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---------~~~vi~~~~~~~~~~~l~~~~  250 (386)
T cd08283         180 AEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---------GAETINFEEVDDVVEALRELT  250 (386)
T ss_pred             ccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---------CcEEEcCCcchHHHHHHHHHc
Confidence            3456788999999987 888888888754336999999999988888742         11222211111 1     11 


Q ss_pred             CCCCccEEEeccc---------------ccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988          234 ASGFVDAVHAGAA---------------LHCWPSPSNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       234 ~~~~fD~V~~~~v---------------l~h~~d~~~~l~el~rvlk~g~~~g~~  273 (319)
                      ....+|+|+-.-.               +.-..++...+.++.+.+++++..-.+
T Consensus       251 ~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~  305 (386)
T cd08283         251 GGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII  305 (386)
T ss_pred             CCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEE
Confidence            2346898877421               111245566788899999888765444

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=93.39  E-value=1  Score=42.27  Aligned_cols=96  Identities=21%  Similarity=0.132  Sum_probs=66.2

Q ss_pred             cCCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC------CCCCC-C
Q 020988          165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR------LPFAS-G  236 (319)
Q Consensus       165 ~~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~------lp~~~-~  236 (319)
                      .++++|+=+|||. |.++..+++.....+|+.+|.+++-++.|++....         +.+.....+      ..... .
T Consensus       167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~---------~~~~~~~~~~~~~~~~~~t~g~  237 (350)
T COG1063         167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA---------DVVVNPSEDDAGAEILELTGGR  237 (350)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC---------eEeecCccccHHHHHHHHhCCC
Confidence            3455999999997 77777788776667999999999999999985422         222222111      01112 3


Q ss_pred             CccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          237 FVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      .+|+|+-.-.     . ..++.++.++++++|....+-.
T Consensus       238 g~D~vie~~G-----~-~~~~~~ai~~~r~gG~v~~vGv  270 (350)
T COG1063         238 GADVVIEAVG-----S-PPALDQALEALRPGGTVVVVGV  270 (350)
T ss_pred             CCCEEEECCC-----C-HHHHHHHHHHhcCCCEEEEEec
Confidence            6999976444     2 3367888899999988776655

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=93.24  E-value=0.17  Score=43.74  Aligned_cols=49  Identities=22%  Similarity=0.242  Sum_probs=34.5

Q ss_pred             hccCCCeEEEEcCCcChHHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHh
Q 020988          163 KSAQGGLLVDVSCGSGLFSRKFAKSG--TYSGVVALDFSENMLRQCYDFIK  211 (319)
Q Consensus       163 ~~~~~~~VLDiGcG~G~~~~~l~~~g--~~~~v~gvD~s~~~l~~a~~~~~  211 (319)
                      ....+-++.|-.||.|+++--+.-..  .-..|+|.|+++++++.|++++.
T Consensus        48 ~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~   98 (246)
T PF11599_consen   48 EGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS   98 (246)
T ss_dssp             SS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred             cCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence            34456789999999999876554332  23479999999999999998763

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=93.16  E-value=0.42  Score=41.83  Aligned_cols=99  Identities=15%  Similarity=0.170  Sum_probs=62.4

Q ss_pred             CCcHHHHHHHHHHhhcc------CCCeEEEEcCCcChHHH--HHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCC
Q 020988          149 PGPDEEFKMAQEYFKSA------QGGLLVDVSCGSGLFSR--KFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSN  220 (319)
Q Consensus       149 ~~~~~~~~~l~~~l~~~------~~~~VLDiGcG~G~~~~--~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~  220 (319)
                      |+.......+.++|...      ++-++||||.|.--.--  -..+.|+  +.+|.|+++..++.|+..+..+ +.....
T Consensus        55 PgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgw--rfvGseid~~sl~sA~~ii~~N-~~l~~~  131 (292)
T COG3129          55 PGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGW--RFVGSEIDSQSLSSAKAIISAN-PGLERA  131 (292)
T ss_pred             CChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecc--eeecCccCHHHHHHHHHHHHcC-cchhhh
Confidence            44444466666776432      45578999988653221  1233456  9999999999999999988663 222334


Q ss_pred             eEEEEcCCCC-----CCCCCCCccEEEecccccCC
Q 020988          221 LALVRADVCR-----LPFASGFVDAVHAGAALHCW  250 (319)
Q Consensus       221 i~~~~~d~~~-----lp~~~~~fD~V~~~~vl~h~  250 (319)
                      +++....-.+     +--.++.||+++|+--+|..
T Consensus       132 I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~s  166 (292)
T COG3129         132 IRLRRQKDSDAIFNGIIGKNERYDATLCNPPFHDS  166 (292)
T ss_pred             eeEEeccCccccccccccccceeeeEecCCCcchh
Confidence            5554432111     12237899999998877743

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=93.13  E-value=0.056  Score=35.90  Aligned_cols=26  Identities=23%  Similarity=0.686  Sum_probs=21.7

Q ss_pred             eeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      -+|++|+.++...+           .++.|+.||..|
T Consensus         6 ~~C~~Cg~~~~~~d-----------DiVvCp~Cgapy   31 (54)
T PF14446_consen    6 CKCPVCGKKFKDGD-----------DIVVCPECGAPY   31 (54)
T ss_pred             ccChhhCCcccCCC-----------CEEECCCCCCcc
Confidence            46999999887665           678999999887

>smart00440 ZnF_C2C2 C2C2 Zinc finger

Probab=93.02  E-value=0.057  Score=33.72  Aligned_cols=38  Identities=16%  Similarity=0.299  Sum_probs=21.2

Q ss_pred             eeccCCCccccc-cCCCCCcccceecCceeeCccCCccc
Q 020988           61 FSCPICYEPLIR-KGPTGLTLGAIYRSGFKCRKCDKTYS   98 (319)
Q Consensus        61 l~CP~C~~~l~~-~~~~~~~~~~i~~~~~~C~~Cg~~f~   98 (319)
                      ..||.|+..-.. ......+.++-+.-.+.|.+||+.|.
T Consensus         1 ~~Cp~C~~~~a~~~q~Q~RsaDE~mT~fy~C~~C~~~w~   39 (40)
T smart00440        1 APCPKCGNREATFFQLQTRSADEPMTVFYVCTKCGHRWR   39 (40)
T ss_pred             CcCCCCCCCeEEEEEEcccCCCCCCeEEEEeCCCCCEeC
Confidence            369999973211 00111222223335789999999873

Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=93.00  E-value=0.18  Score=43.93  Aligned_cols=97  Identities=18%  Similarity=0.179  Sum_probs=65.5

Q ss_pred             CeEEEEcCCcChHHHHHHhhCCC---------CeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC------
Q 020988          168 GLLVDVSCGSGLFSRKFAKSGTY---------SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------  232 (319)
Q Consensus       168 ~~VLDiGcG~G~~~~~l~~~g~~---------~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------  232 (319)
                      .+++|+.+..|.|+..+.+....         ..+++||+-+ |.             ..+++.-+++|++...      
T Consensus        43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-Ma-------------PI~GV~qlq~DIT~~stae~Ii  108 (294)
T KOG1099|consen   43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-MA-------------PIEGVIQLQGDITSASTAEAII  108 (294)
T ss_pred             hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-CC-------------ccCceEEeecccCCHhHHHHHH
Confidence            68999999999999988877321         1399999854 11             3467888999998753      


Q ss_pred             --CCCCCccEEEecc-----cccCCCCHH------HHHHHHHHhhcCCCeeEEEEeecc
Q 020988          233 --FASGFVDAVHAGA-----ALHCWPSPS------NAASVFSSSYSLLSICYLLQFRYT  278 (319)
Q Consensus       233 --~~~~~fD~V~~~~-----vl~h~~d~~------~~l~el~rvlk~g~~~g~~~~~~~  278 (319)
                        |..++.|+|+|-+     .+|.+..-.      .++.-...+||+||.+---+|...
T Consensus       109 ~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~  167 (294)
T KOG1099|consen  109 EHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGR  167 (294)
T ss_pred             HHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccC
Confidence              6677999999966     344332111      223334557888887766666433

>COG1656 Uncharacterized conserved protein [Function unknown]

Probab=92.98  E-value=0.043  Score=45.14  Aligned_cols=41  Identities=24%  Similarity=0.493  Sum_probs=25.2

Q ss_pred             ccCeeeccCCCccccccCCCC---Cccc---ceecCceeeCccCCcc
Q 020988           57 EGDLFSCPICYEPLIRKGPTG---LTLG---AIYRSGFKCRKCDKTY   97 (319)
Q Consensus        57 ~~~~l~CP~C~~~l~~~~~~~---~~~~---~i~~~~~~C~~Cg~~f   97 (319)
                      ....-+||.|+++|.......   ..+.   ......++|++||..|
T Consensus        94 ~~e~~RCp~CN~~L~~vs~eev~~~Vp~~~~~~~~~f~~C~~CgkiY  140 (165)
T COG1656          94 FPEFSRCPECNGELEKVSREEVKEKVPEKVYRNYEEFYRCPKCGKIY  140 (165)
T ss_pred             ccccccCcccCCEeccCcHHHHhhccchhhhhcccceeECCCCcccc
Confidence            456889999999875432111   0111   1122467899999988

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=92.86  E-value=1.2  Score=43.88  Aligned_cols=101  Identities=20%  Similarity=0.138  Sum_probs=67.0

Q ss_pred             ccCCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC-----------C
Q 020988          164 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-----------L  231 (319)
Q Consensus       164 ~~~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~-----------l  231 (319)
                      ..++.+|+=+|+|. |..+...++.. ..+|+++|.+++.++.+++.          +.+++..|..+           +
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~~rle~aesl----------GA~~v~i~~~e~~~~~~gya~~~  230 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRPEVAEQVESM----------GAEFLELDFEEEGGSGDGYAKVM  230 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----------CCeEEEeccccccccccchhhhc
Confidence            35789999999996 77776666663 23899999999999888873          33333222211           0


Q ss_pred             C----------CCC--CCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          232 P----------FAS--GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       232 p----------~~~--~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      .          +.+  ..+|+|+.......-+.|....+++.+.+|+++....+-.
T Consensus       231 s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        231 SEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             chhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence            0          011  3699999877665544554445888899998887555433

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=92.81  E-value=0.11  Score=47.82  Aligned_cols=90  Identities=21%  Similarity=0.225  Sum_probs=65.2

Q ss_pred             cHHHHHHH-HHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHH-------HHHHHhhcCccCCCCeE
Q 020988          151 PDEEFKMA-QEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQ-------CYDFIKQDNTILTSNLA  222 (319)
Q Consensus       151 ~~~~~~~l-~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~-------a~~~~~~~~~~~~~~i~  222 (319)
                      .+.+...+ .......+|..|+|-=.|||.++...+.-|.  -|+|.|++-.+++.       .+.++++.+. ...-+.
T Consensus       192 mDAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~FGa--~viGtDIDyr~vragrg~~~si~aNFkQYg~-~~~fld  268 (421)
T KOG2671|consen  192 MDAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHFGA--YVIGTDIDYRTVRAGRGEDESIKANFKQYGS-SSQFLD  268 (421)
T ss_pred             cchhHHHHHhhhhccCCCCEEecCccccCceeeehhhhcc--eeeccccchheeecccCCCcchhHhHHHhCC-cchhhh
Confidence            34443333 3334457899999999999999988888776  99999999998873       3445555421 123467


Q ss_pred             EEEcCCCCCCCC-CCCccEEEe
Q 020988          223 LVRADVCRLPFA-SGFVDAVHA  243 (319)
Q Consensus       223 ~~~~d~~~lp~~-~~~fD~V~~  243 (319)
                      ++.+|...-|+. +..||+|+|
T Consensus       269 vl~~D~sn~~~rsn~~fDaIvc  290 (421)
T KOG2671|consen  269 VLTADFSNPPLRSNLKFDAIVC  290 (421)
T ss_pred             eeeecccCcchhhcceeeEEEe
Confidence            888999887764 578999998

>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins

Probab=92.58  E-value=0.055  Score=41.90  Aligned_cols=22  Identities=32%  Similarity=0.899  Sum_probs=18.5

Q ss_pred             ccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988           63 CPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        63 CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      ||+|+++|...             .+.|++|+-..
T Consensus         1 CPvCg~~l~vt-------------~l~C~~C~t~i   22 (113)
T PF09862_consen    1 CPVCGGELVVT-------------RLKCPSCGTEI   22 (113)
T ss_pred             CCCCCCceEEE-------------EEEcCCCCCEE
Confidence            99999998754             47999999865

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=92.45  E-value=0.7  Score=45.09  Aligned_cols=103  Identities=7%  Similarity=-0.019  Sum_probs=70.8

Q ss_pred             CCeEEEEcCCcChHHHHHHhh----CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEE
Q 020988          167 GGLLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH  242 (319)
Q Consensus       167 ~~~VLDiGcG~G~~~~~l~~~----g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~  242 (319)
                      ...|+-+|+|.|-+.....+.    ....++++++-+|+++-....+--+.   ...+++++..|+..++.+.++.|+++
T Consensus       368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~---W~~~Vtii~~DMR~w~ap~eq~DI~V  444 (649)
T KOG0822|consen  368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFEC---WDNRVTIISSDMRKWNAPREQADIIV  444 (649)
T ss_pred             eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhh---hcCeeEEEeccccccCCchhhccchH
Confidence            346888999999877665543    23467899999999987766532222   46789999999999985568899988


Q ss_pred             ec--ccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          243 AG--AALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       243 ~~--~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      +-  +.+..-.=-.+.+.-+.+.||+.   |+.+.
T Consensus       445 SELLGSFGDNELSPECLDG~q~fLkpd---gIsIP  476 (649)
T KOG0822|consen  445 SELLGSFGDNELSPECLDGAQKFLKPD---GISIP  476 (649)
T ss_pred             HHhhccccCccCCHHHHHHHHhhcCCC---ceEcc
Confidence            62  23222211235677777777776   45554

>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.39  E-value=0.091  Score=30.06  Aligned_cols=22  Identities=27%  Similarity=0.848  Sum_probs=11.6

Q ss_pred             eccCCCccccccCCCCCcccceecCceeeCc
Q 020988           62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRK   92 (319)
Q Consensus        62 ~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~   92 (319)
                      .||+|++++.+...         ...++|.+
T Consensus         1 ~CP~C~s~l~~~~~---------ev~~~C~N   22 (28)
T PF03119_consen    1 TCPVCGSKLVREEG---------EVDIRCPN   22 (28)
T ss_dssp             B-TTT--BEEE-CC---------TTCEEE--
T ss_pred             CcCCCCCEeEcCCC---------CEeEECCC
Confidence            59999999986553         24678876

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=92.24  E-value=6.1  Score=34.93  Aligned_cols=75  Identities=17%  Similarity=0.192  Sum_probs=45.2

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC-CCC-CCCCccEEE
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPF-ASGFVDAVH  242 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~-~~~~fD~V~  242 (319)
                      ..|++||=+|=.-- .+..++-.+...+|+.+|+++..++..++..++.+    -+++.+..|+.+ +|- -.++||+++
T Consensus        43 L~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~g----l~i~~~~~DlR~~LP~~~~~~fD~f~  117 (243)
T PF01861_consen   43 LEGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEG----LPIEAVHYDLRDPLPEELRGKFDVFF  117 (243)
T ss_dssp             STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT------EEEE---TTS---TTTSS-BSEEE
T ss_pred             ccCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcC----CceEEEEecccccCCHHHhcCCCEEE
Confidence            46899999995543 33444444556799999999999999998887763    348889999866 341 247999998


Q ss_pred             ec
Q 020988          243 AG  244 (319)
Q Consensus       243 ~~  244 (319)
                      .-
T Consensus       118 TD  119 (243)
T PF01861_consen  118 TD  119 (243)
T ss_dssp             E-
T ss_pred             eC
Confidence            73

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PF13240 zinc_ribbon_2: zinc-ribbon domain

Probab=92.22  E-value=0.07  Score=29.01  Aligned_cols=22  Identities=23%  Similarity=0.588  Sum_probs=16.3

Q ss_pred             eccCCCccccccCCCCCcccceecCceeeCccCCc
Q 020988           62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT   96 (319)
Q Consensus        62 ~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~   96 (319)
                      .||.||..+...             ...|++||+.
T Consensus         1 ~Cp~CG~~~~~~-------------~~fC~~CG~~   22 (23)
T PF13240_consen    1 YCPNCGAEIEDD-------------AKFCPNCGTP   22 (23)
T ss_pred             CCcccCCCCCCc-------------CcchhhhCCc
Confidence            499999977532             3479999974

>smart00661 RPOL9 RNA polymerase subunit 9

Probab=92.20  E-value=0.14  Score=33.68  Aligned_cols=34  Identities=32%  Similarity=0.588  Sum_probs=23.3

Q ss_pred             eccCCCccccccCCCCCcccceecCceeeCccCCccccCCc
Q 020988           62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDN  102 (319)
Q Consensus        62 ~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~~~g  102 (319)
                      -||.||+.|......       ....+.|+.||+.+.....
T Consensus         2 FCp~Cg~~l~~~~~~-------~~~~~vC~~Cg~~~~~~~~   35 (52)
T smart00661        2 FCPKCGNMLIPKEGK-------EKRRFVCRKCGYEEPIEQK   35 (52)
T ss_pred             CCCCCCCccccccCC-------CCCEEECCcCCCeEECCCc
Confidence            499999977554320       0136889999998865544

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=92.16  E-value=1.6  Score=40.80  Aligned_cols=113  Identities=18%  Similarity=0.140  Sum_probs=75.8

Q ss_pred             HhhccCCCeEEEEcCCcChHHHHHHhhCCCC----eEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC----
Q 020988          161 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYS----GVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----  232 (319)
Q Consensus       161 ~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~----~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----  232 (319)
                      .+...++.+|||..+..|.=+.++.+.....    .|++=|.+..-+......++..   ...++.+...|+...|    
T Consensus       150 ~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l---~~~~~~v~~~~~~~~p~~~~  226 (375)
T KOG2198|consen  150 ALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRL---PSPNLLVTNHDASLFPNIYL  226 (375)
T ss_pred             hcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhcc---CCcceeeecccceecccccc
Confidence            3456799999999999999998888875433    7999999998777777666443   2344545444544333    


Q ss_pred             -----CCCCCccEEEec------ccccCCCCHH--------------HHHHHHHHhhcCCCeeEEEEee
Q 020988          233 -----FASGFVDAVHAG------AALHCWPSPS--------------NAASVFSSSYSLLSICYLLQFR  276 (319)
Q Consensus       233 -----~~~~~fD~V~~~------~vl~h~~d~~--------------~~l~el~rvlk~g~~~g~~~~~  276 (319)
                           .....||-|++-      .++.+.++..              -.++-+.|-++.++++|.++++
T Consensus       227 ~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYS  295 (375)
T KOG2198|consen  227 KDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYS  295 (375)
T ss_pred             ccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEe
Confidence                 233578998862      2555544432              1245567777778888888883

>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length

Probab=92.15  E-value=0.088  Score=36.94  Aligned_cols=26  Identities=35%  Similarity=0.945  Sum_probs=17.2

Q ss_pred             eeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      +.||.|+++|.+.+           +.+.|..|+..|
T Consensus         2 ~~CP~C~~~L~~~~-----------~~~~C~~C~~~~   27 (70)
T PF07191_consen    2 NTCPKCQQELEWQG-----------GHYHCEACQKDY   27 (70)
T ss_dssp             -B-SSS-SBEEEET-----------TEEEETTT--EE
T ss_pred             CcCCCCCCccEEeC-----------CEEECccccccc
Confidence            47999999988765           567888888877

Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.

>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.15  E-value=0.041  Score=42.80  Aligned_cols=44  Identities=23%  Similarity=0.505  Sum_probs=27.1

Q ss_pred             cCeeeccCCCcccccc--CCCCCcccceecCceeeCccCCccccCC
Q 020988           58 GDLFSCPICYEPLIRK--GPTGLTLGAIYRSGFKCRKCDKTYSSKD  101 (319)
Q Consensus        58 ~~~l~CP~C~~~l~~~--~~~~~~~~~i~~~~~~C~~Cg~~f~~~~  101 (319)
                      +.+++||+|..++.-.  ....+..+.-+.-.-.|.+||..||..+
T Consensus        37 ati~qcp~csasirgd~~vegvlglg~dye~psfchncgs~fpwte   82 (160)
T COG4306          37 ATITQCPICSASIRGDYYVEGVLGLGGDYEPPSFCHNCGSRFPWTE   82 (160)
T ss_pred             HHHhcCCccCCcccccceeeeeeccCCCCCCcchhhcCCCCCCcHH
Confidence            4688999999865321  1112223333334568999999997653

>PF01780 Ribosomal_L37ae: Ribosomal L37ae protein family; InterPro: IPR002674 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=92.12  E-value=0.075  Score=39.27  Aligned_cols=30  Identities=27%  Similarity=0.821  Sum_probs=21.7

Q ss_pred             CeeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      .-+.||.|+..-....         ..+++.|..|+..|
T Consensus        34 ~ky~Cp~Cgk~~vkR~---------a~GIW~C~~C~~~~   63 (90)
T PF01780_consen   34 AKYTCPFCGKTSVKRV---------ATGIWKCKKCGKKF   63 (90)
T ss_dssp             S-BEESSSSSSEEEEE---------ETTEEEETTTTEEE
T ss_pred             CCCcCCCCCCceeEEe---------eeEEeecCCCCCEE
Confidence            3578999999543322         13789999999887

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This ribosomal protein is found in archaebacteria and eukaryotes []. Ribosomal protein L37 has a single zinc finger-like motif of the C2-C2 type [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_Y 4A17_Y 4A1C_Y 4A1A_Y 3O58_g 3IZS_m 3O5H_g 1S1I_9 3IZR_m 1YSH_D ....

>KOG2691 consensus RNA polymerase II subunit 9 [Transcription]

Probab=92.12  E-value=0.12  Score=39.12  Aligned_cols=46  Identities=15%  Similarity=0.299  Sum_probs=29.4

Q ss_pred             ccccccc-CeeeccCCCcc--ccccCCCCCcccceecCceeeCccCCccc
Q 020988           52 QTLELEG-DLFSCPICYEP--LIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (319)
Q Consensus        52 ~~~~~~~-~~l~CP~C~~~--l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~   98 (319)
                      ++++++. ..-.||.|+..  +.... .+...+.-++-++.|.+|+|.|.
T Consensus        64 ~DPTLPrts~~~C~~C~~~eavffQ~-~~~r~d~~m~l~yvC~~C~h~wt  112 (113)
T KOG2691|consen   64 SDPTLPRTSDKHCPKCGHREAVFFQA-QTRRADEAMRLFYVCCSCGHRWT  112 (113)
T ss_pred             cCCCcCccccccCCccCCcceEEEec-ccccccceEEEEEEecccccccc
Confidence            5678887 77889999972  32221 12222333445778999999873

>PF14353 CpXC: CpXC protein

Probab=92.10  E-value=0.064  Score=42.69  Aligned_cols=40  Identities=20%  Similarity=0.459  Sum_probs=22.8

Q ss_pred             eeccCCCccccccCCCCCcc-------cceec---CceeeCccCCccccC
Q 020988           61 FSCPICYEPLIRKGPTGLTL-------GAIYR---SGFKCRKCDKTYSSK  100 (319)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~-------~~i~~---~~~~C~~Cg~~f~~~  100 (319)
                      ++||.|+..........++.       ..|..   ..+.|++||+.+...
T Consensus         2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~~   51 (128)
T PF14353_consen    2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRLE   51 (128)
T ss_pred             cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceecC
Confidence            58999998543322211111       11111   266899999999543

>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues

Probab=91.90  E-value=0.91  Score=38.38  Aligned_cols=98  Identities=14%  Similarity=0.183  Sum_probs=57.0

Q ss_pred             HHHHHHhhccCCC-eEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC--
Q 020988          156 KMAQEYFKSAQGG-LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--  232 (319)
Q Consensus       156 ~~l~~~l~~~~~~-~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--  232 (319)
                      +.+.+.+...++. .|+.+|||.=.....+....+...++-+|. |++++.-++.++..+.....+.+++.+|+.+..  
T Consensus        67 ~~v~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~  145 (183)
T PF04072_consen   67 DAVREFIAKHPGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWI  145 (183)
T ss_dssp             HHHHHHHHHHTTESEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHH
T ss_pred             HHHHHhhccCCCCcEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhH
Confidence            5566666554555 999999999888777777544567888887 445655555554431111123567889987622  


Q ss_pred             -------CCCCCccEEEecccccCCCCHHH
Q 020988          233 -------FASGFVDAVHAGAALHCWPSPSN  255 (319)
Q Consensus       233 -------~~~~~fD~V~~~~vl~h~~d~~~  255 (319)
                             +....--++++-+++.++ +++.
T Consensus       146 ~~L~~~g~~~~~ptl~i~Egvl~Yl-~~~~  174 (183)
T PF04072_consen  146 DALPKAGFDPDRPTLFIAEGVLMYL-SPEQ  174 (183)
T ss_dssp             HHHHHCTT-TTSEEEEEEESSGGGS--HHH
T ss_pred             HHHHHhCCCCCCCeEEEEcchhhcC-CHHH
Confidence                   223445567777788888 4444

It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....

>smart00659 RPOLCX RNA polymerase subunit CX

Probab=91.84  E-value=0.15  Score=32.59  Aligned_cols=28  Identities=21%  Similarity=0.535  Sum_probs=21.7

Q ss_pred             eeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      .+.|..||..+....          ....+|+.||+.-
T Consensus         2 ~Y~C~~Cg~~~~~~~----------~~~irC~~CG~rI   29 (44)
T smart00659        2 IYICGECGRENEIKS----------KDVVRCRECGYRI   29 (44)
T ss_pred             EEECCCCCCEeecCC----------CCceECCCCCceE
Confidence            478999999766543          2678999999965

present in RNA polymerase I, II and III

>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27)

Probab=91.64  E-value=0.12  Score=32.35  Aligned_cols=23  Identities=35%  Similarity=0.860  Sum_probs=18.2

Q ss_pred             eccCCCccccccCCCCCcccceecCceeeCccC
Q 020988           62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCD   94 (319)
Q Consensus        62 ~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg   94 (319)
                      .||.|+.||.+...          +...|..|+
T Consensus        19 ~Cp~C~~PL~~~k~----------g~~~Cv~C~   41 (41)
T PF06677_consen   19 HCPDCGTPLMRDKD----------GKIYCVSCG   41 (41)
T ss_pred             ccCCCCCeeEEecC----------CCEECCCCC
Confidence            59999999988432          567899985

It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]

Probab=91.56  E-value=0.66  Score=47.58  Aligned_cols=94  Identities=10%  Similarity=0.020  Sum_probs=55.7

Q ss_pred             CeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHH-HHHHhhcCccCCCCeEEEEcCC---CCCCCCCCCccEEEe
Q 020988          168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQC-YDFIKQDNTILTSNLALVRADV---CRLPFASGFVDAVHA  243 (319)
Q Consensus       168 ~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a-~~~~~~~~~~~~~~i~~~~~d~---~~lp~~~~~fD~V~~  243 (319)
                      ..+--.|.||=.....+.+..|..+++-+|-+...-+.+ +..+.+.   ....++++.|.-   ..+.|++=+-=.|+.
T Consensus       484 ~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~---~~ge~dILiGTQmiaKG~~fp~vtLVgvl~  560 (730)
T COG1198         484 EHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQF---ANGEADILIGTQMIAKGHDFPNVTLVGVLD  560 (730)
T ss_pred             CeeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHH---hCCCCCeeecchhhhcCCCcccceEEEEEe
Confidence            357777888888889999999989999999877654432 2222222   123455555421   223454433344555


Q ss_pred             cccccCCCCH---HHHHHHHHHhh
Q 020988          244 GAALHCWPSP---SNAASVFSSSY  264 (319)
Q Consensus       244 ~~vl~h~~d~---~~~l~el~rvl  264 (319)
                      .+..-+.+|.   ++.++.+..+.
T Consensus       561 aD~~L~~~DfRA~Er~fqll~Qva  584 (730)
T COG1198         561 ADTGLGSPDFRASERTFQLLMQVA  584 (730)
T ss_pred             chhhhcCCCcchHHHHHHHHHHHH
Confidence            5566666664   45555555544

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=91.49  E-value=1.3  Score=37.67  Aligned_cols=106  Identities=12%  Similarity=0.067  Sum_probs=63.8

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHh----hCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAK----SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~----~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (319)
                      .-.+++++-..++..|+|+|.-.|.-+..++.    .|-..+|+++|++-..+.-+..+        .+++.|+.++-.+
T Consensus        58 ~~~yQellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e--------~p~i~f~egss~d  129 (237)
T COG3510          58 MWNYQELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE--------VPDILFIEGSSTD  129 (237)
T ss_pred             HHHHHHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc--------CCCeEEEeCCCCC
Confidence            34445566566778999999998865555444    35446999999987665544432        3689999998876


Q ss_pred             CC-------CCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCC
Q 020988          231 LP-------FASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLS  268 (319)
Q Consensus       231 lp-------~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~  268 (319)
                      ..       ..++.--+.++..+-||....-..++.+.+++..|.
T Consensus       130 pai~eqi~~~~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~  174 (237)
T COG3510         130 PAIAEQIRRLKNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGD  174 (237)
T ss_pred             HHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCc
Confidence            43       122333344444555555333333333444444443

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=91.33  E-value=1.4  Score=41.04  Aligned_cols=95  Identities=17%  Similarity=0.154  Sum_probs=61.8

Q ss_pred             hccCCCeEEEEcCC-cChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEc-CCCCCCCCCCCccE
Q 020988          163 KSAQGGLLVDVSCG-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DVCRLPFASGFVDA  240 (319)
Q Consensus       163 ~~~~~~~VLDiGcG-~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~-d~~~lp~~~~~fD~  240 (319)
                      ...|+.+|+=+|+| .|..+.++++... .+|+++|.+++-.+.|++.-..         .++.. |....+--.+.||+
T Consensus       163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd---------~~i~~~~~~~~~~~~~~~d~  232 (339)
T COG1064         163 NVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGAD---------HVINSSDSDALEAVKEIADA  232 (339)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCc---------EEEEcCCchhhHHhHhhCcE
Confidence            35689999999988 3557777777432 5999999999999999885321         23332 22222211234999


Q ss_pred             EEecccccCCCCHHHHHHHHHHhhcCCCeeEEEE
Q 020988          241 VHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQ  274 (319)
Q Consensus       241 V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~  274 (319)
                      |+..-.       ...+....+.|+++|..-.+-
T Consensus       233 ii~tv~-------~~~~~~~l~~l~~~G~~v~vG  259 (339)
T COG1064         233 IIDTVG-------PATLEPSLKALRRGGTLVLVG  259 (339)
T ss_pred             EEECCC-------hhhHHHHHHHHhcCCEEEEEC
Confidence            987544       334666777778777665543

>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function

Probab=90.95  E-value=0.17  Score=41.35  Aligned_cols=40  Identities=25%  Similarity=0.491  Sum_probs=25.0

Q ss_pred             CeeeccCCCccccccCCCC---Cccccee---cCceeeCccCCccc
Q 020988           59 DLFSCPICYEPLIRKGPTG---LTLGAIY---RSGFKCRKCDKTYS   98 (319)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~---~~~~~i~---~~~~~C~~Cg~~f~   98 (319)
                      .+-+||.|+++|.......   ..+..+.   ...++|+.||+.|-
T Consensus        90 ~~sRC~~CN~~L~~v~~~~v~~~vp~~v~~~~~~f~~C~~C~kiyW  135 (147)
T PF01927_consen   90 IFSRCPKCNGPLRPVSKEEVKDRVPPYVYETYDEFWRCPGCGKIYW  135 (147)
T ss_pred             CCCccCCCCcEeeechhhccccccCccccccCCeEEECCCCCCEec
Confidence            3678999999775432211   1122222   23789999999983

The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.

>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

Probab=90.86  E-value=0.19  Score=29.66  Aligned_cols=27  Identities=19%  Similarity=0.496  Sum_probs=18.5

Q ss_pred             eeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      +.|..|+........          ...+|+.||+.-
T Consensus         1 Y~C~~Cg~~~~~~~~----------~~irC~~CG~RI   27 (32)
T PF03604_consen    1 YICGECGAEVELKPG----------DPIRCPECGHRI   27 (32)
T ss_dssp             EBESSSSSSE-BSTS----------STSSBSSSS-SE
T ss_pred             CCCCcCCCeeEcCCC----------CcEECCcCCCeE
Confidence            468999997665432          567999999864

Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=90.72  E-value=0.54  Score=41.40  Aligned_cols=98  Identities=15%  Similarity=0.159  Sum_probs=63.9

Q ss_pred             hhccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHH----HHHHHHHHhhcCccCCCCeEEEEcCCCCCC---C
Q 020988          162 FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENM----LRQCYDFIKQDNTILTSNLALVRADVCRLP---F  233 (319)
Q Consensus       162 l~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~----l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~  233 (319)
                      ++.+++.+||=+|+++|.......+. ++..-|++++.|+..    +..|+++         +|+--+.-|+....   .
T Consensus       152 ihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR---------tNiiPIiEDArhP~KYRm  222 (317)
T KOG1596|consen  152 IHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR---------TNIIPIIEDARHPAKYRM  222 (317)
T ss_pred             eeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc---------CCceeeeccCCCchheee
Confidence            35678999999999999998888877 677789999998754    4444443         46666666775521   1


Q ss_pred             CCCCccEEEecccccCCCCHH--HHHH-HHHHhhcCCCeeEEE
Q 020988          234 ASGFVDAVHAGAALHCWPSPS--NAAS-VFSSSYSLLSICYLL  273 (319)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~--~~l~-el~rvlk~g~~~g~~  273 (319)
                      .-.-.|+|++-     ++.|+  +.+. ..+-.||+++-+-+-
T Consensus       223 lVgmVDvIFaD-----vaqpdq~RivaLNA~~FLk~gGhfvis  260 (317)
T KOG1596|consen  223 LVGMVDVIFAD-----VAQPDQARIVALNAQYFLKNGGHFVIS  260 (317)
T ss_pred             eeeeEEEEecc-----CCCchhhhhhhhhhhhhhccCCeEEEE
Confidence            12467777663     43443  3322 344477777654433

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=90.57  E-value=0.13  Score=34.66  Aligned_cols=36  Identities=28%  Similarity=0.528  Sum_probs=20.5

Q ss_pred             ccCeeeccCCCccccccCCCCCcccceecCceeeCccCCc
Q 020988           57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT   96 (319)
Q Consensus        57 ~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~   96 (319)
                      ..-.|.||-||+..+..-..-...    ...++|++||..
T Consensus        24 ~~v~F~CPnCGe~~I~Rc~~CRk~----g~~Y~Cp~CGF~   59 (61)
T COG2888          24 TAVKFPCPNCGEVEIYRCAKCRKL----GNPYRCPKCGFE   59 (61)
T ss_pred             ceeEeeCCCCCceeeehhhhHHHc----CCceECCCcCcc
Confidence            446788999996443311101111    256789999864

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=90.47  E-value=0.92  Score=43.06  Aligned_cols=101  Identities=14%  Similarity=0.054  Sum_probs=66.4

Q ss_pred             CCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-CCCCCCccEEEe
Q 020988          166 QGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PFASGFVDAVHA  243 (319)
Q Consensus       166 ~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~~~~~fD~V~~  243 (319)
                      .+-++||.=+|+|.=+...+.. ....+|+.-|+|+++++..+++++-++... ..+.+...|+..+ ....+.||+|=.
T Consensus        49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~-~~~~v~~~DAn~ll~~~~~~fD~IDl  127 (377)
T PF02005_consen   49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLED-ERIEVSNMDANVLLYSRQERFDVIDL  127 (377)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SG-CCEEEEES-HHHHHCHSTT-EEEEEE
T ss_pred             CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccC-ceEEEehhhHHHHhhhccccCCEEEe
Confidence            3468999999999866666665 334589999999999999999987764221 1577888887653 234678999943


Q ss_pred             cccccCCCCHHHHHHHHHHhhcCCCeeE
Q 020988          244 GAALHCWPSPSNAASVFSSSYSLLSICY  271 (319)
Q Consensus       244 ~~vl~h~~d~~~~l~el~rvlk~g~~~g  271 (319)
                          .-+..|..++....+.++.+|..+
T Consensus       128 ----DPfGSp~pfldsA~~~v~~gGll~  151 (377)
T PF02005_consen  128 ----DPFGSPAPFLDSALQAVKDGGLLC  151 (377)
T ss_dssp             ------SS--HHHHHHHHHHEEEEEEEE
T ss_pred             ----CCCCCccHhHHHHHHHhhcCCEEE
Confidence                445567788887777776665443

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=90.43  E-value=1.2  Score=42.32  Aligned_cols=78  Identities=19%  Similarity=0.196  Sum_probs=60.1

Q ss_pred             hhccCCCeEEEEcCCcChHHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC---CCCCC
Q 020988          162 FKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGF  237 (319)
Q Consensus       162 l~~~~~~~VLDiGcG~G~~~~~l~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~  237 (319)
                      +.++++.+|||..+..|.=+.+++..- -...|++.|.+.+-++..+.++...|   ..+..+...|..++|   ++. +
T Consensus       237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlG---v~ntiv~n~D~~ef~~~~~~~-~  312 (460)
T KOG1122|consen  237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLG---VTNTIVSNYDGREFPEKEFPG-S  312 (460)
T ss_pred             cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhC---CCceEEEccCcccccccccCc-c
Confidence            356789999999999987666655542 23489999999999999999988764   566667777887665   443 8


Q ss_pred             ccEEEe
Q 020988          238 VDAVHA  243 (319)
Q Consensus       238 fD~V~~  243 (319)
                      ||-|+.
T Consensus       313 fDRVLL  318 (460)
T KOG1122|consen  313 FDRVLL  318 (460)
T ss_pred             cceeee
Confidence            999985

>PTZ00357 methyltransferase; Provisional

Probab=90.39  E-value=2.3  Score=43.06  Aligned_cols=98  Identities=15%  Similarity=0.121  Sum_probs=62.8

Q ss_pred             eEEEEcCCcChHHHHHHhh----CCCCeEEEEeCCHHHHHHHHHHHhh-cCccC-----CCCeEEEEcCCCCCCCCC---
Q 020988          169 LLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQ-DNTIL-----TSNLALVRADVCRLPFAS---  235 (319)
Q Consensus       169 ~VLDiGcG~G~~~~~l~~~----g~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~-----~~~i~~~~~d~~~lp~~~---  235 (319)
                      .|+-+|+|-|-+.....+.    +-..+|++||-++..+.....+... ..+..     ...|+++..|+..+..+.   
T Consensus       703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~  782 (1072)
T PTZ00357        703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG  782 (1072)
T ss_pred             EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence            5899999999877665544    4456899999997655444443211 11111     345899999999874321   


Q ss_pred             --------CCccEEEe--cccccCCCCHHHHHHHHHHhhcC
Q 020988          236 --------GFVDAVHA--GAALHCWPSPSNAASVFSSSYSL  266 (319)
Q Consensus       236 --------~~fD~V~~--~~vl~h~~d~~~~l~el~rvlk~  266 (319)
                              +.+|+|++  .+++-.-.=-.+.|.-+.+.||+
T Consensus       783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKd  823 (1072)
T PTZ00357        783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLED  823 (1072)
T ss_pred             cccccccccccceehHhhhcccccccCCHHHHHHHHHhhhh
Confidence                    37999987  33443222223567778888775

>PF13248 zf-ribbon_3: zinc-ribbon domain

Probab=90.22  E-value=0.14  Score=28.72  Aligned_cols=23  Identities=22%  Similarity=0.541  Sum_probs=16.7

Q ss_pred             eeccCCCccccccCCCCCcccceecCceeeCccCCc
Q 020988           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT   96 (319)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~   96 (319)
                      ..||.|+..+..             +...|++||..
T Consensus         3 ~~Cp~Cg~~~~~-------------~~~fC~~CG~~   25 (26)
T PF13248_consen    3 MFCPNCGAEIDP-------------DAKFCPNCGAK   25 (26)
T ss_pred             CCCcccCCcCCc-------------ccccChhhCCC
Confidence            469999995432             34589999974

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=90.19  E-value=2.2  Score=33.10  Aligned_cols=87  Identities=20%  Similarity=0.253  Sum_probs=57.9

Q ss_pred             cCCCeEEEEcCCcCh-HHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC-CCCccEEE
Q 020988          165 AQGGLLVDVSCGSGL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVH  242 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~-~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~~fD~V~  242 (319)
                      ...++|+|||-|.=. .+..+++.|.  .++++|+.+.   .|           ..+++++..|+.+.... =...|+|+
T Consensus        12 ~~~gkVvEVGiG~~~~VA~~L~e~g~--dv~atDI~~~---~a-----------~~g~~~v~DDitnP~~~iY~~A~lIY   75 (129)
T COG1255          12 NARGKVVEVGIGFFLDVAKRLAERGF--DVLATDINEK---TA-----------PEGLRFVVDDITNPNISIYEGADLIY   75 (129)
T ss_pred             hcCCcEEEEccchHHHHHHHHHHcCC--cEEEEecccc---cC-----------cccceEEEccCCCccHHHhhCcccee
Confidence            345699999988654 5667777776  9999999885   11           24788999999875421 13467777


Q ss_pred             ecccccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988          243 AGAALHCWPSPSNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       243 ~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~  273 (319)
                      +      +.-|.++...+.++.+..+....+
T Consensus        76 S------iRpppEl~~~ildva~aVga~l~I  100 (129)
T COG1255          76 S------IRPPPELQSAILDVAKAVGAPLYI  100 (129)
T ss_pred             e------cCCCHHHHHHHHHHHHhhCCCEEE
Confidence            6      334455566666666665554443

>TIGR00595 priA primosomal protein N'

Probab=90.18  E-value=6  Score=39.13  Aligned_cols=33  Identities=18%  Similarity=0.101  Sum_probs=21.9

Q ss_pred             CeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCH
Q 020988          168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSE  200 (319)
Q Consensus       168 ~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~  200 (319)
                      ..+--.|-|+=.....+.+..|...|..+|-+.
T Consensus       262 ~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~  294 (505)
T TIGR00595       262 EDLVYKGYGTEQVEEELAKLFPGARIARIDSDT  294 (505)
T ss_pred             CeeEeecccHHHHHHHHHhhCCCCcEEEEeccc
Confidence            345556677777777777776666777777643

All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG1779 C4-type Zn-finger protein [General function prediction only]

Probab=90.07  E-value=0.19  Score=42.53  Aligned_cols=43  Identities=21%  Similarity=0.284  Sum_probs=27.4

Q ss_pred             ccccCeeeccCCCccccccCC--CCCcccceecCceeeCccCCcc
Q 020988           55 ELEGDLFSCPICYEPLIRKGP--TGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        55 ~~~~~~l~CP~C~~~l~~~~~--~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      ......+.||+|++.|..+..  ..=..+.+......|.+||..+
T Consensus         9 ~~~~~~~~CPvCg~~l~~~~~~~~IPyFG~V~i~t~~C~~CgYR~   53 (201)
T COG1779           9 EEFETRIDCPVCGGTLKAHMYLYDIPYFGEVLISTGVCERCGYRS   53 (201)
T ss_pred             eeeeeeecCCcccceeeEEEeeecCCccceEEEEEEEccccCCcc
Confidence            344567889999996533211  0112344555678999999887

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=89.40  E-value=0.22  Score=38.43  Aligned_cols=30  Identities=20%  Similarity=0.614  Sum_probs=20.9

Q ss_pred             eeccCCCccccccCCCCCcccceecCceeeCccCCccccC
Q 020988           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK  100 (319)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~~  100 (319)
                      -.||.||..+.--+          +.-..|+.||..|+..
T Consensus        10 R~Cp~CG~kFYDLn----------k~PivCP~CG~~~~~~   39 (108)
T PF09538_consen   10 RTCPSCGAKFYDLN----------KDPIVCPKCGTEFPPE   39 (108)
T ss_pred             ccCCCCcchhccCC----------CCCccCCCCCCccCcc
Confidence            36999999653222          1345799999999544

The function of members of this family is unknown.

>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.26  E-value=0.2  Score=35.64  Aligned_cols=37  Identities=22%  Similarity=0.548  Sum_probs=25.5

Q ss_pred             eeeccCCCccccccCCCCCcccceecCceeeCccCCccccCCce
Q 020988           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNY  103 (319)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~~~g~  103 (319)
                      ++.||+|+-.|.....+++       .+-.|+.|+-++..+...
T Consensus         1 ~llCP~C~v~l~~~~rs~v-------EiD~CPrCrGVWLDrGEL   37 (88)
T COG3809           1 MLLCPICGVELVMSVRSGV-------EIDYCPRCRGVWLDRGEL   37 (88)
T ss_pred             CcccCcCCceeeeeeecCc-------eeeeCCccccEeecchhH
Confidence            4789999998765543222       345799999998655443

>PRK05580 primosome assembly protein PriA; Validated

Probab=89.15  E-value=6.7  Score=40.33  Aligned_cols=29  Identities=21%  Similarity=0.543  Sum_probs=20.2

Q ss_pred             eeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      ...||.|+.+|..+..         .+.+.|..||+..
T Consensus       390 ~~~C~~C~~~l~~h~~---------~~~l~Ch~Cg~~~  418 (679)
T PRK05580        390 VAECPHCDASLTLHRF---------QRRLRCHHCGYQE  418 (679)
T ss_pred             ccCCCCCCCceeEECC---------CCeEECCCCcCCC
Confidence            4567777777766542         3678899999865

>PRK14873 primosome assembly protein PriA; Provisional

Probab=89.08  E-value=2.2  Score=43.64  Aligned_cols=97  Identities=14%  Similarity=0.001  Sum_probs=56.8

Q ss_pred             CCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecc-
Q 020988          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA-  245 (319)
Q Consensus       167 ~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~-  245 (319)
                      +..+.-.|-|+-.....+.+..|...|.-+|-+. .++    .+.       ....++.+.-...|...+.+.+|...+ 
T Consensus       430 s~~l~~~g~Gter~eeeL~~~FP~~~V~r~d~d~-~l~----~~~-------~~~~IlVGTqgaepm~~g~~~lV~ilda  497 (665)
T PRK14873        430 SDRLRAVVVGARRTAEELGRAFPGVPVVTSGGDQ-VVD----TVD-------AGPALVVATPGAEPRVEGGYGAALLLDA  497 (665)
T ss_pred             CCcceeeeccHHHHHHHHHHHCCCCCEEEEChHH-HHH----hhc-------cCCCEEEECCCCcccccCCceEEEEEcc
Confidence            3457778888888888888888888888888542 222    221       245566665322333335677776544 


Q ss_pred             -cccCCCC---HHHHHHHHHHhh---cCCCeeEEEEe
Q 020988          246 -ALHCWPS---PSNAASVFSSSY---SLLSICYLLQF  275 (319)
Q Consensus       246 -vl~h~~d---~~~~l~el~rvl---k~g~~~g~~~~  275 (319)
                       .+-+.+|   .+++++.+.++.   +++...|.+++
T Consensus       498 D~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~i  534 (665)
T PRK14873        498 WALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVV  534 (665)
T ss_pred             hhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEE
Confidence             2333444   456666666654   34444555555

>PTZ00255 60S ribosomal protein L37a; Provisional

Probab=89.07  E-value=0.21  Score=36.93  Aligned_cols=30  Identities=23%  Similarity=0.712  Sum_probs=22.0

Q ss_pred             CeeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      .-+.||.|+..-.....         .+++.|..|+..|
T Consensus        35 a~y~CpfCgk~~vkR~a---------~GIW~C~~C~~~~   64 (90)
T PTZ00255         35 AKYFCPFCGKHAVKRQA---------VGIWRCKGCKKTV   64 (90)
T ss_pred             CCccCCCCCCCceeeee---------eEEEEcCCCCCEE
Confidence            45789999975333221         2789999999987

>PF14205 Cys_rich_KTR: Cysteine-rich KTR

Probab=89.02  E-value=0.42  Score=31.63  Aligned_cols=36  Identities=22%  Similarity=0.366  Sum_probs=20.6

Q ss_pred             eeeccCCCccccccCCCCCcccceecCceeeCccCCccc
Q 020988           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (319)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~   98 (319)
                      -+.||+||+.-......+..   +..-.+.|+.|.+...
T Consensus         4 Wi~CP~CgnKTR~kir~DT~---LkNfPlyCpKCK~Etl   39 (55)
T PF14205_consen    4 WILCPICGNKTRLKIREDTV---LKNFPLYCPKCKQETL   39 (55)
T ss_pred             EEECCCCCCccceeeecCce---eccccccCCCCCceEE
Confidence            46799999842221111111   1123579999999773

>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]

Probab=89.01  E-value=0.21  Score=47.38  Aligned_cols=30  Identities=30%  Similarity=0.748  Sum_probs=24.4

Q ss_pred             eccCCCccccccCCCCCcccceecCceeeCccCCccccCC
Q 020988           62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKD  101 (319)
Q Consensus        62 ~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~~~  101 (319)
                      .||.||..+...+.          +.++|+.||..++...
T Consensus       352 ~Cp~Cg~~m~S~G~----------~g~rC~kCg~~~~~~~  381 (421)
T COG1571         352 VCPRCGGRMKSAGR----------NGFRCKKCGTRARETL  381 (421)
T ss_pred             CCCccCCchhhcCC----------CCcccccccccCCccc
Confidence            79999998877663          4899999999985543

>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species

Probab=88.95  E-value=0.32  Score=26.67  Aligned_cols=24  Identities=25%  Similarity=0.708  Sum_probs=15.3

Q ss_pred             ccCCCccccccCCCCCcccceecCceeeCccCC
Q 020988           63 CPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDK   95 (319)
Q Consensus        63 CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~   95 (319)
                      |-.|+..+...+.         ...+.|++||.
T Consensus         1 C~sC~~~i~~r~~---------~v~f~CPnCG~   24 (24)
T PF07754_consen    1 CTSCGRPIAPREQ---------AVPFPCPNCGF   24 (24)
T ss_pred             CccCCCcccCccc---------CceEeCCCCCC
Confidence            5667776654431         25678999984

It is likely to bind zinc via its four well-conserved cysteine residues.

>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2

Probab=88.87  E-value=0.24  Score=29.90  Aligned_cols=32  Identities=25%  Similarity=0.422  Sum_probs=19.6

Q ss_pred             eeccCCCccccccCCCCCcccceecCceeeCccCCccccC
Q 020988           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK  100 (319)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~~  100 (319)
                      .-||.|++-|...+...        ....|++|+..+++.
T Consensus         2 ~FCp~C~nlL~p~~~~~--------~~~~C~~C~Y~~~~~   33 (35)
T PF02150_consen    2 RFCPECGNLLYPKEDKE--------KRVACRTCGYEEPIS   33 (35)
T ss_dssp             -BETTTTSBEEEEEETT--------TTEEESSSS-EEE-S
T ss_pred             eeCCCCCccceEcCCCc--------cCcCCCCCCCccCCC
Confidence            45999999776543210        122899999988654

7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. In archaebacteria, there is generally a single form of RNA polymerase which also consist of an oligomeric assemblage of 10 to 13 polypeptides. It has recently been shown [], [] that small subunits of about 15 kDa, found in polymerase types I and II, are highly conserved. These proteins contain a probable zinc finger in their N-terminal region and a C-terminal zinc ribbon domain (see IPR001222 from INTERPRO).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_I 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I ....

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=88.59  E-value=1.6  Score=40.94  Aligned_cols=43  Identities=26%  Similarity=0.300  Sum_probs=34.1

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHH
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYD  208 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~  208 (319)
                      ..-..|+|+|.|.|.+++.+.- +++..|.+||-|....+.|++
T Consensus       152 ~gi~~vvD~GaG~G~LSr~lSl-~y~lsV~aIegsq~~~~ra~r  194 (476)
T KOG2651|consen  152 TGIDQVVDVGAGQGHLSRFLSL-GYGLSVKAIEGSQRLVERAQR  194 (476)
T ss_pred             cCCCeeEEcCCCchHHHHHHhh-ccCceEEEeccchHHHHHHHH
Confidence            4557899999999999886654 456799999999777666654

>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family

Probab=88.52  E-value=0.39  Score=31.91  Aligned_cols=36  Identities=25%  Similarity=0.501  Sum_probs=20.7

Q ss_pred             eeeccCCCccc--cccCCCCCcccceecCceeeCccCCcccc
Q 020988           60 LFSCPICYEPL--IRKGPTGLTLGAIYRSGFKCRKCDKTYSS   99 (319)
Q Consensus        60 ~l~CP~C~~~l--~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~   99 (319)
                      |..||.||+.-  .+... .   +.-...++.|.+||...+.
T Consensus         1 LkPCPfCGg~~~~~~~~~-~---~~~~~~~~~C~~Cga~~~~   38 (53)
T TIGR03655         1 LKPCPFCGGADVYLRRGF-D---PLDLSHYFECSTCGASGPV   38 (53)
T ss_pred             CCCCCCCCCcceeeEecc-C---CCCCEEEEECCCCCCCccc
Confidence            45799999832  22111 1   1111245689999998643

Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=88.47  E-value=1.5  Score=39.93  Aligned_cols=79  Identities=13%  Similarity=0.170  Sum_probs=60.7

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcC-ccCCCCeEEEEcCCCCC--CCCCCCccEE
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-TILTSNLALVRADVCRL--PFASGFVDAV  241 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~-~~~~~~i~~~~~d~~~l--p~~~~~fD~V  241 (319)
                      ..++++|-||.|.|.+.+...++---.++.-+|++.+.++..++.+...- .+..+++.+..||-..+  ....++||+|
T Consensus       120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi  199 (337)
T KOG1562|consen  120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI  199 (337)
T ss_pred             CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence            45789999999999999888877434578999999999999998776532 12356788888886543  2347899999


Q ss_pred             Ee
Q 020988          242 HA  243 (319)
Q Consensus       242 ~~  243 (319)
                      +.
T Consensus       200 i~  201 (337)
T KOG1562|consen  200 IT  201 (337)
T ss_pred             EE
Confidence            86

>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []

Probab=88.35  E-value=1.6  Score=41.43  Aligned_cols=120  Identities=16%  Similarity=0.127  Sum_probs=70.7

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHH----HHHHhh--C-CCCeEEEEeC----CHHHHHHHHHHHhhcCccCCCCeEEE
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFS----RKFAKS--G-TYSGVVALDF----SENMLRQCYDFIKQDNTILTSNLALV  224 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~----~~l~~~--g-~~~~v~gvD~----s~~~l~~a~~~~~~~~~~~~~~i~~~  224 (319)
                      ..+.+.+...+.-.|+|+|-|.|.--    ..++.+  + |..++|||+.    +...++.+.+++.+.-....-..+|.
T Consensus       100 qaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~  179 (374)
T PF03514_consen  100 QAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFH  179 (374)
T ss_pred             HHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEE
Confidence            34555555566778999999999633    333333  1 4568999999    78888888777654211112233443


Q ss_pred             Ec---CCCCC-----CCCCCCccEEEecccccCCCCHHH----HHHHHHHhhcCCCeeEEEEe
Q 020988          225 RA---DVCRL-----PFASGFVDAVHAGAALHCWPSPSN----AASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       225 ~~---d~~~l-----p~~~~~fD~V~~~~vl~h~~d~~~----~l~el~rvlk~g~~~g~~~~  275 (319)
                      ..   +.+.+     ....+..=+|-+...|||+.+...    -...+.+.+|.++|.-+++-
T Consensus       180 ~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~  242 (374)
T PF03514_consen  180 PVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLV  242 (374)
T ss_pred             ecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEE
Confidence            32   22322     233344445556778899874321    23446677777777755555

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.

>COG1594 RPB9 DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS [Transcription]

Probab=88.28  E-value=0.34  Score=37.69  Aligned_cols=50  Identities=16%  Similarity=0.226  Sum_probs=28.2

Q ss_pred             ccccccccccCeeeccCCCcc-ccccCCCCCcccceecCceeeCccCCccc
Q 020988           49 ERNQTLELEGDLFSCPICYEP-LIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (319)
Q Consensus        49 ~~~~~~~~~~~~l~CP~C~~~-l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~   98 (319)
                      .+++...++.....||.||.. -..........+.-+...++|..||++|.
T Consensus        61 ~~~~~~~~~~~~~~CpkCg~~ea~y~~~QtRsaDEp~T~Fy~C~~Cg~~wr  111 (113)
T COG1594          61 ETQGAKTLPTAKEKCPKCGNKEAYYWQLQTRSADEPETRFYKCTRCGYRWR  111 (113)
T ss_pred             cccCccccccccccCCCCCCceeEEEeeehhccCCCceEEEEecccCCEee
Confidence            445555555557889999982 10000011112222334689999999884

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=88.04  E-value=1.7  Score=38.98  Aligned_cols=65  Identities=23%  Similarity=0.297  Sum_probs=43.1

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhC-----CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSG-----TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g-----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (319)
                      .+...++|+|||.|.++.++.+..     ....++.||-...-. .+..++....  ....+.-+..|+.++.
T Consensus        17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~--~~~~~~R~riDI~dl~   86 (259)
T PF05206_consen   17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDE--SEPKFERLRIDIKDLD   86 (259)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccC--CCCceEEEEEEeeccc
Confidence            566799999999999999998876     456899999865433 2333333220  0124555666776654

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>KOG2906 consensus RNA polymerase III subunit C11 [Transcription]

Probab=88.03  E-value=0.29  Score=36.47  Aligned_cols=36  Identities=25%  Similarity=0.601  Sum_probs=27.1

Q ss_pred             eeeccCCCccccccCCCCCcccceecCceeeCccCCccccCCc
Q 020988           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDN  102 (319)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~~~g  102 (319)
                      |+-||.||.-|.....      .. ...+.|+.|...|++...
T Consensus         1 m~FCP~Cgn~Live~g------~~-~~rf~C~tCpY~~~I~~e   36 (105)
T KOG2906|consen    1 MLFCPTCGNMLIVESG------ES-CNRFSCRTCPYVFPISRE   36 (105)
T ss_pred             CcccCCCCCEEEEecC------Ce-EeeEEcCCCCceeeEeee
Confidence            5679999998876653      11 367899999999977633

>PF14354 Lar_restr_allev: Restriction alleviation protein Lar

Probab=87.62  E-value=0.43  Score=32.54  Aligned_cols=35  Identities=23%  Similarity=0.549  Sum_probs=19.6

Q ss_pred             CeeeccCCCccccccCC-CCCcccceecCceeeCccCC
Q 020988           59 DLFSCPICYEPLIRKGP-TGLTLGAIYRSGFKCRKCDK   95 (319)
Q Consensus        59 ~~l~CP~C~~~l~~~~~-~~~~~~~i~~~~~~C~~Cg~   95 (319)
                      .|..||.||++-..... .....+..  ..+.|.+||.
T Consensus         2 ~LkPCPFCG~~~~~~~~~~~~~~~~~--~~V~C~~Cga   37 (61)
T PF14354_consen    2 ELKPCPFCGSADVLIRQDEGFDYGMY--YYVECTDCGA   37 (61)
T ss_pred             CCcCCCCCCCcceEeecccCCCCCCE--EEEEcCCCCC
Confidence            57789999875433221 11111110  3467999998

>TIGR00280 L37a ribosomal protein L37a

Probab=87.60  E-value=0.27  Score=36.39  Aligned_cols=30  Identities=27%  Similarity=0.881  Sum_probs=22.0

Q ss_pred             CeeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      .-+.||.|+..-.....         -+++.|..|+..|
T Consensus        34 a~y~CpfCgk~~vkR~a---------~GIW~C~~C~~~~   63 (91)
T TIGR00280        34 AKYVCPFCGKKTVKRGS---------TGIWTCRKCGAKF   63 (91)
T ss_pred             cCccCCCCCCCceEEEe---------eEEEEcCCCCCEE
Confidence            45789999975332221         3789999999987

This model finds eukaryotic ribosomal protein L37a and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a.

>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]

Probab=87.55  E-value=2  Score=41.38  Aligned_cols=108  Identities=23%  Similarity=0.218  Sum_probs=64.5

Q ss_pred             cCCCeEEEEcCCcCh--HHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhc---CccCCCCeEEEEcCCCCCCCC-CCCc
Q 020988          165 AQGGLLVDVSCGSGL--FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD---NTILTSNLALVRADVCRLPFA-SGFV  238 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~--~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~---~~~~~~~i~~~~~d~~~lp~~-~~~f  238 (319)
                      ..+..++|+|.|.|.  ++....-.+....++.||.|..|...........   +.....++.+..   ..+|.. ...|
T Consensus       199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r---~~~pi~~~~~y  275 (491)
T KOG2539|consen  199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHR---QRLPIDIKNGY  275 (491)
T ss_pred             cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhc---ccCCCCcccce
Confidence            456778889887664  3333333333457999999999999988776541   100111111111   124543 3569


Q ss_pred             cEEEecccccCCCCHHHHHHHHHHhh-cCCCeeEEEEe
Q 020988          239 DAVHAGAALHCWPSPSNAASVFSSSY-SLLSICYLLQF  275 (319)
Q Consensus       239 D~V~~~~vl~h~~d~~~~l~el~rvl-k~g~~~g~~~~  275 (319)
                      |+|++.+.++++.++..-+.+..... +.+++++.++.
T Consensus       276 Dlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lVi  313 (491)
T KOG2539|consen  276 DLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVI  313 (491)
T ss_pred             eeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEE
Confidence            99999999999998875555555433 33444444433

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=87.48  E-value=1.3  Score=42.07  Aligned_cols=55  Identities=7%  Similarity=0.026  Sum_probs=41.0

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhh
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ  212 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~  212 (319)
                      +.-.+.+...++.+||-|..|....+..+.+ +| .+|++||+|+......+-++..
T Consensus        25 ~vD~~aL~i~~~d~vl~ItSaG~N~L~yL~~-~P-~~I~aVDlNp~Q~aLleLKlAa   79 (380)
T PF11899_consen   25 RVDMEALNIGPDDRVLTITSAGCNALDYLLA-GP-KRIHAVDLNPAQNALLELKLAA   79 (380)
T ss_pred             HHHHHHhCCCCCCeEEEEccCCchHHHHHhc-CC-ceEEEEeCCHHHHHHHHHHHHH
Confidence            4455677888999999997776666665544 44 6999999999988777655543

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=87.46  E-value=0.31  Score=38.86  Aligned_cols=42  Identities=24%  Similarity=0.599  Sum_probs=26.7

Q ss_pred             ccCeeeccCCCccccccCCCCCcccceecCceeeCccCCccccCCc
Q 020988           57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDN  102 (319)
Q Consensus        57 ~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~~~g  102 (319)
                      ......||.|++....... ....+   ...++|+.|+..|....|
T Consensus        27 ~~~~~~cP~C~s~~~~k~g-~~~~~---~qRyrC~~C~~tf~~~~~   68 (129)
T COG3677          27 QITKVNCPRCKSSNVVKIG-GIRRG---HQRYKCKSCGSTFTVETG   68 (129)
T ss_pred             hcccCcCCCCCccceeeEC-Ccccc---ccccccCCcCcceeeecc
Confidence            3456789999997622111 11111   367899999999965544

>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional

Probab=87.34  E-value=0.34  Score=32.74  Aligned_cols=34  Identities=26%  Similarity=0.461  Sum_probs=18.9

Q ss_pred             cCeeeccCCCcc-ccccCCCCCcccceecCceeeCccCCc
Q 020988           58 GDLFSCPICYEP-LIRKGPTGLTLGAIYRSGFKCRKCDKT   96 (319)
Q Consensus        58 ~~~l~CP~C~~~-l~~~~~~~~~~~~i~~~~~~C~~Cg~~   96 (319)
                      ...|.||.||.. +.+... -.    -....+.|++||..
T Consensus        23 ~~~F~CPnCG~~~I~RC~~-CR----k~~~~Y~CP~CGF~   57 (59)
T PRK14890         23 AVKFLCPNCGEVIIYRCEK-CR----KQSNPYTCPKCGFE   57 (59)
T ss_pred             cCEeeCCCCCCeeEeechh-HH----hcCCceECCCCCCc
Confidence            457888989886 332110 00    01245788888763

>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]

Probab=87.15  E-value=0.36  Score=43.05  Aligned_cols=35  Identities=34%  Similarity=0.522  Sum_probs=26.1

Q ss_pred             ccCeeeccCCCccccccCCCCCcccceecCceeeCccCCcccc
Q 020988           57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSS   99 (319)
Q Consensus        57 ~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~   99 (319)
                      +--...||.|+.-+...+        +......|++|+|.+..
T Consensus        25 e~lw~KCp~c~~~~y~~e--------L~~n~~vcp~c~~h~ri   59 (294)
T COG0777          25 EGLWTKCPSCGEMLYRKE--------LESNLKVCPKCGHHMRI   59 (294)
T ss_pred             CCceeECCCccceeeHHH--------HHhhhhcccccCccccc
Confidence            556778999999765543        23467899999999943

>PRK03976 rpl37ae 50S ribosomal protein L37Ae; Reviewed

Probab=87.14  E-value=0.29  Score=36.19  Aligned_cols=30  Identities=27%  Similarity=0.800  Sum_probs=22.0

Q ss_pred             CeeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      .-+.||.|+..-.....         -+++.|..|+..|
T Consensus        35 a~y~CpfCgk~~vkR~a---------~GIW~C~~C~~~~   64 (90)
T PRK03976         35 AKHVCPVCGRPKVKRVG---------TGIWECRKCGAKF   64 (90)
T ss_pred             cCccCCCCCCCceEEEE---------EEEEEcCCCCCEE
Confidence            45789999875433221         2789999999987

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=87.00  E-value=0.39  Score=41.89  Aligned_cols=14  Identities=14%  Similarity=0.366  Sum_probs=10.9

Q ss_pred             CceeeCccCCcccc
Q 020988           86 SGFKCRKCDKTYSS   99 (319)
Q Consensus        86 ~~~~C~~Cg~~f~~   99 (319)
                      ....|++||..+..
T Consensus        47 ~V~vCP~CgyA~~~   60 (214)
T PF09986_consen   47 EVWVCPHCGYAAFE   60 (214)
T ss_pred             eEEECCCCCCcccc
Confidence            46789999988743

>COG3877 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.90  E-value=0.3  Score=36.87  Aligned_cols=25  Identities=36%  Similarity=0.897  Sum_probs=19.6

Q ss_pred             eeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      +.+||+|+..++..             -++|++|+-+-
T Consensus         6 ~~~cPvcg~~~iVT-------------eL~c~~~etTV   30 (122)
T COG3877           6 INRCPVCGRKLIVT-------------ELKCSNCETTV   30 (122)
T ss_pred             CCCCCcccccceeE-------------EEecCCCCceE
Confidence            56899999977654             37999998764

>COG4888 Uncharacterized Zn ribbon-containing protein [General function prediction only]

Probab=86.89  E-value=0.27  Score=36.80  Aligned_cols=34  Identities=21%  Similarity=0.514  Sum_probs=23.2

Q ss_pred             ccCeeeccCCCccccc----cCCCCCcccceecCceeeCccCCcc
Q 020988           57 EGDLFSCPICYEPLIR----KGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        57 ~~~~l~CP~C~~~l~~----~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      ....|.||.|+.....    ...       ...+.+.|.+||..|
T Consensus        19 L~k~FtCp~Cghe~vs~ctvkk~-------~~~g~~~Cg~CGls~   56 (104)
T COG4888          19 LPKTFTCPRCGHEKVSSCTVKKT-------VNIGTAVCGNCGLSF   56 (104)
T ss_pred             CCceEecCccCCeeeeEEEEEec-------CceeEEEcccCcceE
Confidence            3457999999984322    111       112678999999998

>TIGR00244 transcriptional regulator NrdR

Probab=86.82  E-value=0.41  Score=38.76  Aligned_cols=41  Identities=20%  Similarity=0.429  Sum_probs=24.9

Q ss_pred             eeccCCCccccccCCC--CCcccceecCceeeCccCCccccCCc
Q 020988           61 FSCPICYEPLIRKGPT--GLTLGAIYRSGFKCRKCDKTYSSKDN  102 (319)
Q Consensus        61 l~CP~C~~~l~~~~~~--~~~~~~i~~~~~~C~~Cg~~f~~~~g  102 (319)
                      +.||-|+.+-....++  ......| +..=.|.+||..|...+.
T Consensus         1 M~CP~C~~~dtkViDSR~~~dg~~I-RRRReC~~C~~RFTTyEr   43 (147)
T TIGR00244         1 MHCPFCQHHNTRVLDSRLVEDGQSI-RRRRECLECHERFTTFER   43 (147)
T ss_pred             CCCCCCCCCCCEeeeccccCCCCee-eecccCCccCCccceeee
Confidence            4799999854332222  1222234 345589999999965443

Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes.

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=86.81  E-value=3.2  Score=38.77  Aligned_cols=87  Identities=20%  Similarity=0.111  Sum_probs=43.5

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhh--------C--------CCCeEEEEeCCHHHHHHHHHHHhhcC--ccCCCC--eEEE
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKS--------G--------TYSGVVALDFSENMLRQCYDFIKQDN--TILTSN--LALV  224 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~--------g--------~~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~~--i~~~  224 (319)
                      ...-+|+|+||..|..+..+...        .        +..+|+--|+-.+--...-+.+....  .....+  +.-+
T Consensus        15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv   94 (334)
T PF03492_consen   15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV   94 (334)
T ss_dssp             TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred             CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence            44568999999999988766543        0        12478888874432222211111100  000112  2334


Q ss_pred             EcCCCCCCCCCCCccEEEecccccCCC
Q 020988          225 RADVCRLPFASGFVDAVHAGAALHCWP  251 (319)
Q Consensus       225 ~~d~~~lp~~~~~fD~V~~~~vl~h~~  251 (319)
                      .+.+..-=+++++.|++++..+|||+.
T Consensus        95 pgSFy~rLfP~~Svh~~~Ss~alHWLS  121 (334)
T PF03492_consen   95 PGSFYGRLFPSNSVHFGHSSYALHWLS  121 (334)
T ss_dssp             ES-TTS--S-TT-EEEEEEES-TTB-S
T ss_pred             CchhhhccCCCCceEEEEEechhhhcc
Confidence            466666557789999999999999875

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=86.80  E-value=3.6  Score=37.16  Aligned_cols=85  Identities=15%  Similarity=0.196  Sum_probs=61.4

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC---CCCccEE
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA---SGFVDAV  241 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~---~~~fD~V  241 (319)
                      ..|..|+-+| -.-.++.+++-.+-..++..+|+++..+....+..++.   ...++..+..|+.+ |++   .+.||+.
T Consensus       151 L~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~---g~~~ie~~~~Dlr~-plpe~~~~kFDvf  225 (354)
T COG1568         151 LEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEEL---GYNNIEAFVFDLRN-PLPEDLKRKFDVF  225 (354)
T ss_pred             cCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHh---Cccchhheeehhcc-cChHHHHhhCCee
Confidence            4677899999 44555555655555579999999999999999888776   35678888889876 333   3789998


Q ss_pred             EecccccCCCCHHHHHHHHHH
Q 020988          242 HAGAALHCWPSPSNAASVFSS  262 (319)
Q Consensus       242 ~~~~vl~h~~d~~~~l~el~r  262 (319)
                      +.        ||...+..++-
T Consensus       226 iT--------DPpeTi~alk~  238 (354)
T COG1568         226 IT--------DPPETIKALKL  238 (354)
T ss_pred             ec--------CchhhHHHHHH
Confidence            54        66555544443

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=86.80  E-value=1.4  Score=41.87  Aligned_cols=86  Identities=16%  Similarity=0.177  Sum_probs=48.5

Q ss_pred             CCeEEEEcCCcChHHHHHHhh---------------CCCCeEEEEeCCHHHHHHHHHHHhhcCcc----------CCCCe
Q 020988          167 GGLLVDVSCGSGLFSRKFAKS---------------GTYSGVVALDFSENMLRQCYDFIKQDNTI----------LTSNL  221 (319)
Q Consensus       167 ~~~VLDiGcG~G~~~~~l~~~---------------g~~~~v~gvD~s~~~l~~a~~~~~~~~~~----------~~~~i  221 (319)
                      ..+|+|+|||+|.++..+...               -|..+|+.-|+-.+-....-+.+......          ...+.
T Consensus        64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~  143 (386)
T PLN02668         64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS  143 (386)
T ss_pred             ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence            568999999999776554221               12356777777443322222222110000          00011


Q ss_pred             EE---EEcCCCCCCCCCCCccEEEecccccCCCC
Q 020988          222 AL---VRADVCRLPFASGFVDAVHAGAALHCWPS  252 (319)
Q Consensus       222 ~~---~~~d~~~lp~~~~~fD~V~~~~vl~h~~d  252 (319)
                      -|   +.+.+..-=|+.++.+++++..++||+..
T Consensus       144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~  177 (386)
T PLN02668        144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQ  177 (386)
T ss_pred             eEEEecCccccccccCCCceEEEEeeccceeccc
Confidence            12   22444444477899999999999998863

>PHA02998 RNA polymerase subunit; Provisional

Probab=86.72  E-value=0.36  Score=40.12  Aligned_cols=39  Identities=18%  Similarity=0.249  Sum_probs=23.3

Q ss_pred             CeeeccCCCccccc-cCCCCCcccceecCceeeCccCCcc
Q 020988           59 DLFSCPICYEPLIR-KGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        59 ~~l~CP~C~~~l~~-~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      .-..||.|++.-.. ..-...+.++-+...+.|.+||+.|
T Consensus       142 t~v~CPkCg~~~A~f~qlQTRSADEPmT~FYkC~~CG~~w  181 (195)
T PHA02998        142 YNTPCPNCKSKNTTPMMIQTRAADEPPLVRHACRDCKKHF  181 (195)
T ss_pred             cCCCCCCCCCCceEEEEEeeccCCCCceEEEEcCCCCCcc
Confidence            45789999983111 0111122233334578999999999

>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]

Probab=86.37  E-value=0.46  Score=39.96  Aligned_cols=34  Identities=32%  Similarity=0.636  Sum_probs=26.4

Q ss_pred             ccccccCeeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988           53 TLELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        53 ~~~~~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      ++.+=+=.-.|+.|+++|...+           ..+.|++||++=
T Consensus       142 ~~dlGVI~A~CsrC~~~L~~~~-----------~~l~Cp~Cg~tE  175 (188)
T COG1096         142 GNDLGVIYARCSRCRAPLVKKG-----------NMLKCPNCGNTE  175 (188)
T ss_pred             CCcceEEEEEccCCCcceEEcC-----------cEEECCCCCCEE
Confidence            3444445667999999998854           678999999875

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=86.25  E-value=5.4  Score=36.95  Aligned_cols=95  Identities=16%  Similarity=0.149  Sum_probs=57.0

Q ss_pred             ccCCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEE---cCCCCCCCCCCCcc
Q 020988          164 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR---ADVCRLPFASGFVD  239 (319)
Q Consensus       164 ~~~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~---~d~~~lp~~~~~fD  239 (319)
                      ..++.+||=+|+|. |.++.++++.....+|+++|.+++.++.+++. ..      .  .++.   .++.++....+.+|
T Consensus       167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l-Ga------~--~vi~~~~~~~~~~~~~~g~~D  237 (343)
T PRK09880        167 DLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM-GA------D--KLVNPQNDDLDHYKAEKGYFD  237 (343)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc-CC------c--EEecCCcccHHHHhccCCCCC
Confidence            34688999999873 66667777764334699999999988888763 11      1  1111   11111111123588


Q ss_pred             EEEecccccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988          240 AVHAGAALHCWPSPSNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       240 ~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~  273 (319)
                      +|+-.     ...+ ..++...++++++|..-.+
T Consensus       238 ~vid~-----~G~~-~~~~~~~~~l~~~G~iv~~  265 (343)
T PRK09880        238 VSFEV-----SGHP-SSINTCLEVTRAKGVMVQV  265 (343)
T ss_pred             EEEEC-----CCCH-HHHHHHHHHhhcCCEEEEE
Confidence            88653     3333 3466777888888765444

>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins

Probab=86.10  E-value=0.48  Score=33.15  Aligned_cols=29  Identities=21%  Similarity=0.460  Sum_probs=20.7

Q ss_pred             eeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      .-.||.||.......         ....+.|++||..+
T Consensus        28 Sq~C~~CG~~~~~~~---------~~r~~~C~~Cg~~~   56 (69)
T PF07282_consen   28 SQTCPRCGHRNKKRR---------SGRVFTCPNCGFEM   56 (69)
T ss_pred             ccCccCccccccccc---------ccceEEcCCCCCEE
Confidence            446999999655411         12678999999875

More information about these proteins can be found at Protein of the Month: Transposase [].

>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]

Probab=85.93  E-value=0.39  Score=38.89  Aligned_cols=41  Identities=20%  Similarity=0.442  Sum_probs=24.7

Q ss_pred             eeccCCCccccccCCC--CCcccceecCceeeCccCCccccCCc
Q 020988           61 FSCPICYEPLIRKGPT--GLTLGAIYRSGFKCRKCDKTYSSKDN  102 (319)
Q Consensus        61 l~CP~C~~~l~~~~~~--~~~~~~i~~~~~~C~~Cg~~f~~~~g  102 (319)
                      +.||.|+.+-....++  ......| +..-.|.+||+.|..-+-
T Consensus         1 M~CPfC~~~~tkViDSR~~edg~aI-RRRReC~~C~~RFTTfE~   43 (156)
T COG1327           1 MKCPFCGHEDTKVIDSRPAEEGNAI-RRRRECLECGERFTTFER   43 (156)
T ss_pred             CCCCCCCCCCCeeeecccccccchh-hhhhcccccccccchhhe
Confidence            4799999854332221  1222334 345589999999965444

>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300

Probab=85.73  E-value=0.49  Score=37.21  Aligned_cols=29  Identities=10%  Similarity=0.099  Sum_probs=20.6

Q ss_pred             eeccCCCccccccCCCCCcccceecCceeeCccCCcccc
Q 020988           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSS   99 (319)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~   99 (319)
                      -.||.||..+.--+          +....|+.||..|+.
T Consensus        10 r~Cp~cg~kFYDLn----------k~p~vcP~cg~~~~~   38 (129)
T TIGR02300        10 RICPNTGSKFYDLN----------RRPAVSPYTGEQFPP   38 (129)
T ss_pred             ccCCCcCccccccC----------CCCccCCCcCCccCc
Confidence            46999999763322          144689999999844

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.

>PRK14892 putative transcription elongation factor Elf1; Provisional

Probab=85.67  E-value=0.7  Score=34.99  Aligned_cols=34  Identities=21%  Similarity=0.428  Sum_probs=21.8

Q ss_pred             cCeeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988           58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        58 ~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      ..++.||.|++..... .  +..   ......|++||..|
T Consensus        19 pt~f~CP~Cge~~v~v-~--~~k---~~~h~~C~~CG~y~   52 (99)
T PRK14892         19 PKIFECPRCGKVSISV-K--IKK---NIAIITCGNCGLYT   52 (99)
T ss_pred             CcEeECCCCCCeEeee-e--cCC---CcceEECCCCCCcc
Confidence            3689999999632210 0  111   13577999999987

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=85.60  E-value=16  Score=32.56  Aligned_cols=101  Identities=19%  Similarity=0.196  Sum_probs=62.3

Q ss_pred             ccCCCeEEEEcCCcChHHHHHHhh----CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC----CCCCC
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR----LPFAS  235 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~~~----g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~----lp~~~  235 (319)
                      ...+..++|+|.|+..-++.+.+.    +...+++-+|+|...++...+.+...  +..-.+.-+++|.+.    +| ..
T Consensus        76 ~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~--y~~l~v~~l~~~~~~~La~~~-~~  152 (321)
T COG4301          76 ITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILRE--YPGLEVNALCGDYELALAELP-RG  152 (321)
T ss_pred             hhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHh--CCCCeEeehhhhHHHHHhccc-CC
Confidence            345789999999998766666554    44468999999999988765555442  112234445666543    33 22


Q ss_pred             CCccEEEecccccCCCCHH---HHHHHHHHhhcCCC
Q 020988          236 GFVDAVHAGAALHCWPSPS---NAASVFSSSYSLLS  268 (319)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~---~~l~el~rvlk~g~  268 (319)
                      +.==.++...+|..+ .|.   .++.++...++||.
T Consensus       153 ~~Rl~~flGStlGN~-tp~e~~~Fl~~l~~a~~pGd  187 (321)
T COG4301         153 GRRLFVFLGSTLGNL-TPGECAVFLTQLRGALRPGD  187 (321)
T ss_pred             CeEEEEEecccccCC-ChHHHHHHHHHHHhcCCCcc
Confidence            232344455678877 454   34555666666654

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=85.59  E-value=14  Score=33.57  Aligned_cols=94  Identities=15%  Similarity=0.091  Sum_probs=58.0

Q ss_pred             hccCCCeEEEEcCC-cChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC------CCCC
Q 020988          163 KSAQGGLLVDVSCG-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL------PFAS  235 (319)
Q Consensus       163 ~~~~~~~VLDiGcG-~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l------p~~~  235 (319)
                      ...++.+||..|+| .|..+.++++.. +.+|++++.++...+.+++.          +++.+..+-...      ....
T Consensus       162 ~~~~~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~~----------g~~~~~~~~~~~~~~~~~~~~~  230 (338)
T cd08254         162 EVKPGETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKEL----------GADEVLNSLDDSPKDKKAAGLG  230 (338)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHh----------CCCEEEcCCCcCHHHHHHHhcC
Confidence            34567899998876 377777777763 24799999999988887552          112222111110      1234


Q ss_pred             CCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988          236 GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~  273 (319)
                      +.+|+|+....      ....++++.+.++++|..-.+
T Consensus       231 ~~~D~vid~~g------~~~~~~~~~~~l~~~G~~v~~  262 (338)
T cd08254         231 GGFDVIFDFVG------TQPTFEDAQKAVKPGGRIVVV  262 (338)
T ss_pred             CCceEEEECCC------CHHHHHHHHHHhhcCCEEEEE
Confidence            57898875321      134577788888888755443

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=85.58  E-value=19  Score=32.31  Aligned_cols=114  Identities=11%  Similarity=-0.022  Sum_probs=63.4

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC-C---
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-L---  231 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~-l---  231 (319)
                      +.+.+.+.. ....|+.+|||-=.-...+.. .+...++=+|. |++++.-++.+.+.+.....+.+++..|+.. +   
T Consensus        72 ~~i~~~~~~-g~~qvV~LGaGlDTr~~Rl~~-~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~  148 (260)
T TIGR00027        72 DFLLAAVAA-GIRQVVILGAGLDTRAYRLPW-PDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAA  148 (260)
T ss_pred             HHHHHHHhc-CCcEEEEeCCccccHHHhcCC-CCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHH
Confidence            344444433 245799999998766555532 22346666665 4456655666654332234678889999862 1   


Q ss_pred             ----CCCCCCccEEEecccccCCCCHH--HHHHHHHHhhcCCCeeEEEEe
Q 020988          232 ----PFASGFVDAVHAGAALHCWPSPS--NAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       232 ----p~~~~~fD~V~~~~vl~h~~d~~--~~l~el~rvlk~g~~~g~~~~  275 (319)
                          .+....--++++-+++.+++...  .+++.+.+...   ++..++|
T Consensus       149 L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~---~gs~l~~  195 (260)
T TIGR00027       149 LAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSA---PGSRLAF  195 (260)
T ss_pred             HHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCC---CCcEEEE
Confidence                12222344677777888884322  33444444333   3445555

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>PF05129 Elf1: Transcription elongation factor Elf1 like; InterPro: IPR007808 This family of uncharacterised, mostly short, proteins contain a putative zinc binding domain with four conserved cysteines

Probab=85.46  E-value=0.4  Score=34.93  Aligned_cols=38  Identities=18%  Similarity=0.477  Sum_probs=15.0

Q ss_pred             CeeeccCCCccccccCCCCCcccceecCceeeCccCCcccc
Q 020988           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSS   99 (319)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~   99 (319)
                      ..|.||.|+..-...-.  ++.. -..+.+.|..||..|..
T Consensus        21 ~~F~CPfC~~~~sV~v~--idkk-~~~~~~~C~~Cg~~~~~   58 (81)
T PF05129_consen   21 KVFDCPFCNHEKSVSVK--IDKK-EGIGILSCRVCGESFQT   58 (81)
T ss_dssp             S----TTT--SS-EEEE--EETT-TTEEEEEESSS--EEEE
T ss_pred             ceEcCCcCCCCCeEEEE--EEcc-CCEEEEEecCCCCeEEE
Confidence            68999999952111000  0000 01267899999999843

; PDB: 1WII_A.

>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc

Probab=85.42  E-value=0.66  Score=29.77  Aligned_cols=28  Identities=29%  Similarity=0.727  Sum_probs=18.2

Q ss_pred             eeccCCCccccccCCCCCcccceecCceeeCccCCc
Q 020988           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT   96 (319)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~   96 (319)
                      +.||.|++.-.....    .    ...++|..|+++
T Consensus        19 ~~CP~Cg~~~~~~~~----~----~~~~~C~~C~~q   46 (46)
T PF12760_consen   19 FVCPHCGSTKHYRLK----T----RGRYRCKACRKQ   46 (46)
T ss_pred             CCCCCCCCeeeEEeC----C----CCeEECCCCCCc
Confidence            679999985211110    0    267899999874

It may be a zinc-binding beta ribbon domain that could bind DNA.

>KOG2907 consensus RNA polymerase I transcription factor TFIIS, subunit A12

Probab=85.11  E-value=0.41  Score=36.67  Aligned_cols=38  Identities=16%  Similarity=0.331  Sum_probs=21.8

Q ss_pred             eeccCCCcc-ccccCCCCCcccceecCceeeCccCCccc
Q 020988           61 FSCPICYEP-LIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (319)
Q Consensus        61 l~CP~C~~~-l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~   98 (319)
                      -+||.||.+ +..+.-...+.++.+.-.+.|++|++.|.
T Consensus        75 ~kCpkCghe~m~Y~T~QlRSADEGQTVFYTC~kC~~k~~  113 (116)
T KOG2907|consen   75 HKCPKCGHEEMSYHTLQLRSADEGQTVFYTCPKCKYKFT  113 (116)
T ss_pred             ccCcccCCchhhhhhhhcccccCCceEEEEcCccceeee
Confidence            479999973 21111111222233334789999999874

2/RPA12 [Transcription]

>PRK05978 hypothetical protein; Provisional

Probab=84.86  E-value=0.65  Score=37.87  Aligned_cols=32  Identities=19%  Similarity=0.432  Sum_probs=20.5

Q ss_pred             eeeccCCCccccccCCCCCcccceecCceeeCccCCcccc
Q 020988           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSS   99 (319)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~   99 (319)
                      ..+||.||+.-...+.-        .-.-+|+.||..|..
T Consensus        33 ~grCP~CG~G~LF~g~L--------kv~~~C~~CG~~~~~   64 (148)
T PRK05978         33 RGRCPACGEGKLFRAFL--------KPVDHCAACGEDFTH   64 (148)
T ss_pred             cCcCCCCCCCccccccc--------ccCCCccccCCcccc
Confidence            46799999854333210        123479999999843

>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]

Probab=84.74  E-value=0.55  Score=39.63  Aligned_cols=33  Identities=18%  Similarity=0.482  Sum_probs=21.3

Q ss_pred             CeeeccCCCcc-----ccccCCCCCcccceecCceeeCccCCcccc
Q 020988           59 DLFSCPICYEP-----LIRKGPTGLTLGAIYRSGFKCRKCDKTYSS   99 (319)
Q Consensus        59 ~~l~CP~C~~~-----l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~   99 (319)
                      -.+.||.|++.     +....        ...-.++|.+||+.++.
T Consensus         5 iy~~Cp~Cg~eev~hEVik~~--------g~~~lvrC~eCG~V~~~   42 (201)
T COG1326           5 IYIECPSCGSEEVSHEVIKER--------GREPLVRCEECGTVHPA   42 (201)
T ss_pred             EEEECCCCCcchhhHHHHHhc--------CCceEEEccCCCcEeec
Confidence            36789999952     11111        11247899999999943

>TIGR01385 TFSII transcription elongation factor S-II

Probab=84.54  E-value=0.58  Score=42.87  Aligned_cols=42  Identities=17%  Similarity=0.339  Sum_probs=25.3

Q ss_pred             cccCeeeccCCCccccc-cCCCCCcccceecCceeeCccCCcc
Q 020988           56 LEGDLFSCPICYEPLIR-KGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        56 ~~~~~l~CP~C~~~l~~-~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      ...+++.||.|++.-.. ..-...+.++-+...+.|.+|||.|
T Consensus       254 ~~t~~~~C~~C~~~~~~~~q~QtrsaDEpmT~f~~C~~Cg~~w  296 (299)
T TIGR01385       254 AVTDLFTCGKCKQKKCTYYQLQTRSADEPMTTFVTCEECGNRW  296 (299)
T ss_pred             CCcccccCCCCCCccceEEEecccCCCCCCeEEEEcCCCCCee
Confidence            35678999999983211 0111122233334578999999987

This model represents eukaryotic transcription elongation factor S-II. This protein allows stalled RNA transcription complexes to perform a cleavage of the nascent RNA and restart at the newly generated 3-prime end.

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=84.34  E-value=1.8  Score=39.58  Aligned_cols=101  Identities=17%  Similarity=0.225  Sum_probs=69.3

Q ss_pred             eEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC---CCCCCccEEEecc
Q 020988          169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFVDAVHAGA  245 (319)
Q Consensus       169 ~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~fD~V~~~~  245 (319)
                      +++|+=||-|.+..-+.+.|. ..+.++|+++.+.+.-+.+.         . ....+|+.++.   ++. .+|+++.+.
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~-~~~~a~e~~~~a~~~y~~N~---------~-~~~~~Di~~~~~~~l~~-~~D~l~ggp   69 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGF-EVVWAVEIDPDACETYKANF---------P-EVICGDITEIDPSDLPK-DVDLLIGGP   69 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTE-EEEEEEESSHHHHHHHHHHH---------T-EEEESHGGGCHHHHHHH-T-SEEEEE-
T ss_pred             cEEEEccCccHHHHHHHhcCc-EEEEEeecCHHHHHhhhhcc---------c-ccccccccccccccccc-cceEEEecc
Confidence            789999999999999999883 57899999999888888775         2 67888988875   443 599998753


Q ss_pred             c---c------cCCCCHH-HHHHHHHHhhcCCCeeEEEEeeccchh
Q 020988          246 A---L------HCWPSPS-NAASVFSSSYSLLSICYLLQFRYTKII  281 (319)
Q Consensus       246 v---l------~h~~d~~-~~l~el~rvlk~g~~~g~~~~~~~~~~  281 (319)
                      -   +      ....|+. .++.++.++++...|-.+++=.+..+.
T Consensus        70 PCQ~fS~ag~~~~~~d~r~~L~~~~~~~v~~~~Pk~~~~ENV~~l~  115 (335)
T PF00145_consen   70 PCQGFSIAGKRKGFDDPRNSLFFEFLRIVKELKPKYFLLENVPGLL  115 (335)
T ss_dssp             --TTTSTTSTHHCCCCHTTSHHHHHHHHHHHHS-SEEEEEEEGGGG
T ss_pred             CCceEeccccccccccccchhhHHHHHHHhhccceEEEecccceee
Confidence            1   1      1233443 356777777777777665554444433

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>COG5349 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.27  E-value=0.55  Score=36.52  Aligned_cols=30  Identities=27%  Similarity=0.495  Sum_probs=18.8

Q ss_pred             eeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      .-+||.||+.-...+-        -...-.|..||+.|
T Consensus        21 ~grCP~CGeGrLF~gF--------LK~~p~C~aCG~dy   50 (126)
T COG5349          21 RGRCPRCGEGRLFRGF--------LKVVPACEACGLDY   50 (126)
T ss_pred             cCCCCCCCCchhhhhh--------cccCchhhhccccc
Confidence            3479999984322211        01233799999988

>PHA02768 hypothetical protein; Provisional

Probab=84.24  E-value=0.21  Score=33.43  Aligned_cols=45  Identities=22%  Similarity=0.528  Sum_probs=25.5

Q ss_pred             eeccCCCccccccCCCCCcccceecCceeeCccCCccccCCceeee
Q 020988           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDL  106 (319)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~~~g~~~~  106 (319)
                      +.||.||..+.....-..... +....+.|.+|+..|.....++..
T Consensus         6 y~C~~CGK~Fs~~~~L~~H~r-~H~k~~kc~~C~k~f~~~s~l~~~   50 (55)
T PHA02768          6 YECPICGEIYIKRKSMITHLR-KHNTNLKLSNCKRISLRTGEYIEI   50 (55)
T ss_pred             cCcchhCCeeccHHHHHHHHH-hcCCcccCCcccceecccceeEEE
Confidence            689999985533211000000 011357999999999766555544

>TIGR01384 TFS_arch transcription factor S, archaeal

Probab=84.17  E-value=0.63  Score=35.47  Aligned_cols=27  Identities=22%  Similarity=0.535  Sum_probs=21.2

Q ss_pred             eccCCCccccccCCCCCcccceecCceeeCccCCcccc
Q 020988           62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSS   99 (319)
Q Consensus        62 ~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~   99 (319)
                      .||.||+.|....           +.+.|+.|+..+..
T Consensus         2 fC~~Cg~~l~~~~-----------~~~~C~~C~~~~~~   28 (104)
T TIGR01384         2 FCPKCGSLMTPKN-----------GVYVCPSCGYEKEK   28 (104)
T ss_pred             CCcccCcccccCC-----------CeEECcCCCCcccc
Confidence            5999999886432           57899999988743

There has been an apparent duplication event in the Halobacteriaceae lineage (Haloarcula, Haloferax, Haloquadratum, Halobacterium and Natromonas). There appears to be a separate duplication in Methanosphaera stadtmanae.

>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7

Probab=84.11  E-value=1  Score=30.20  Aligned_cols=31  Identities=19%  Similarity=0.415  Sum_probs=24.4

Q ss_pred             ccCeeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988           57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        57 ~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      ..-.+.|--|++.......          ..++|..||+..
T Consensus        17 ~~miYiCgdC~~en~lk~~----------D~irCReCG~RI   47 (62)
T KOG3507|consen   17 ATMIYICGDCGQENTLKRG----------DVIRCRECGYRI   47 (62)
T ss_pred             ccEEEEeccccccccccCC----------CcEehhhcchHH
Confidence            4567899999997766542          678999999975

0 [Transcription]

>TIGR01384 TFS_arch transcription factor S, archaeal

Probab=84.02  E-value=0.79  Score=34.94  Aligned_cols=44  Identities=18%  Similarity=0.227  Sum_probs=25.1

Q ss_pred             ccccCeeeccCCCcccc-ccCCCCCcccceecCceeeCccCCccc
Q 020988           55 ELEGDLFSCPICYEPLI-RKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (319)
Q Consensus        55 ~~~~~~l~CP~C~~~l~-~~~~~~~~~~~i~~~~~~C~~Cg~~f~   98 (319)
                      +++..-..||.|++.-. .......+.++-+.-.+.|.+|||.|.
T Consensus        57 ~~~~~~~~Cp~Cg~~~a~f~~~Q~RsadE~~T~fy~C~~C~~~w~  101 (104)
T TIGR01384        57 TLPTTRVECPKCGHKEAYYWLLQTRRADEPETRFYKCTKCGYVWR  101 (104)
T ss_pred             CCCcccCCCCCCCCCeeEEEEeccCCCCCCcEEEEEeCCCCCeeE
Confidence            44444589999998321 111111222223335789999999874

There has been an apparent duplication event in the Halobacteriaceae lineage (Haloarcula, Haloferax, Haloquadratum, Halobacterium and Natromonas). There appears to be a separate duplication in Methanosphaera stadtmanae.

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=83.85  E-value=5.3  Score=36.88  Aligned_cols=99  Identities=12%  Similarity=0.102  Sum_probs=65.3

Q ss_pred             EEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC-CCCccEEEeccc--
Q 020988          170 LVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVHAGAA--  246 (319)
Q Consensus       170 VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~~fD~V~~~~v--  246 (319)
                      |+|+-||.|.+..-+.+.|. ..+.++|+++.+++.-+.++.        + .++.+|+.++... -..+|+++...-  
T Consensus         1 vidLF~G~GG~~~Gl~~aG~-~~~~a~e~~~~a~~ty~~N~~--------~-~~~~~Di~~~~~~~~~~~dvl~gg~PCq   70 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGF-KCVFASEIDKYAQKTYEANFG--------N-KVPFGDITKISPSDIPDFDILLGGFPCQ   70 (315)
T ss_pred             CEEEecCccHHHHHHHHcCC-eEEEEEeCCHHHHHHHHHhCC--------C-CCCccChhhhhhhhCCCcCEEEecCCCc
Confidence            58999999999999988875 346789999998888777642        2 3456777766421 135798876421  


Q ss_pred             ---c----cCCCCHH-HHHHHHHHhhcCCCeeEEEEeecc
Q 020988          247 ---L----HCWPSPS-NAASVFSSSYSLLSICYLLQFRYT  278 (319)
Q Consensus       247 ---l----~h~~d~~-~~l~el~rvlk~g~~~g~~~~~~~  278 (319)
                         .    ..+.|+. .++.++.++++...|-.+++=.+.
T Consensus        71 ~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~P~~~v~ENV~  110 (315)
T TIGR00675        71 PFSIAGKRKGFEDTRGTLFFEIVRILKEKKPKFFLLENVK  110 (315)
T ss_pred             ccchhcccCCCCCchhhHHHHHHHHHhhcCCCEEEeeccH
Confidence               1    1122333 567778888877777655444333

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK12495 hypothetical protein; Provisional

Probab=83.84  E-value=0.62  Score=40.17  Aligned_cols=29  Identities=21%  Similarity=0.540  Sum_probs=23.3

Q ss_pred             CeeeccCCCccccccCCCCCcccceecCceeeCccCCccc
Q 020988           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (319)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~   98 (319)
                      ..+-|+.||.||....           +..+|..|+..+.
T Consensus        41 sa~hC~~CG~PIpa~p-----------G~~~Cp~CQ~~~~   69 (226)
T PRK12495         41 TNAHCDECGDPIFRHD-----------GQEFCPTCQQPVT   69 (226)
T ss_pred             chhhcccccCcccCCC-----------CeeECCCCCCccc
Confidence            4567999999998442           6789999999884

>smart00531 TFIIE Transcription initiation factor IIE

Probab=83.43  E-value=0.58  Score=38.20  Aligned_cols=44  Identities=18%  Similarity=0.434  Sum_probs=26.9

Q ss_pred             ccccccccCeeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988           51 NQTLELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        51 ~~~~~~~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      .-........+.||.|+......+..... +  ..+.+.|+.||..-
T Consensus        90 ~l~~e~~~~~Y~Cp~C~~~y~~~ea~~~~-d--~~~~f~Cp~Cg~~l  133 (147)
T smart00531       90 KLEDETNNAYYKCPNCQSKYTFLEANQLL-D--MDGTFTCPRCGEEL  133 (147)
T ss_pred             HHhcccCCcEEECcCCCCEeeHHHHHHhc-C--CCCcEECCCCCCEE
Confidence            33344556799999999865443221110 1  12459999999864

>PF13453 zf-TFIIB: Transcription factor zinc-finger

Probab=83.22  E-value=0.56  Score=29.29  Aligned_cols=30  Identities=23%  Similarity=0.444  Sum_probs=20.1

Q ss_pred             eccCCCccccccCCCCCcccceecCceeeCccCCccc
Q 020988           62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (319)
Q Consensus        62 ~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~   98 (319)
                      .||.|+..|....-     +.+  .+..|++|+=.|.
T Consensus         1 ~CP~C~~~l~~~~~-----~~~--~id~C~~C~G~W~   30 (41)
T PF13453_consen    1 KCPRCGTELEPVRL-----GDV--EIDVCPSCGGIWF   30 (41)
T ss_pred             CcCCCCcccceEEE-----CCE--EEEECCCCCeEEc
Confidence            59999997654321     112  4568999997764

>PF12773 DZR: Double zinc ribbon

Probab=82.94  E-value=0.91  Score=29.49  Aligned_cols=32  Identities=28%  Similarity=0.461  Sum_probs=22.3

Q ss_pred             cccCeeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988           56 LEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        56 ~~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      ++.+...||.||.+|....          .....|++||...
T Consensus         8 ~~~~~~fC~~CG~~l~~~~----------~~~~~C~~Cg~~~   39 (50)
T PF12773_consen    8 NPDDAKFCPHCGTPLPPPD----------QSKKICPNCGAEN   39 (50)
T ss_pred             CCccccCChhhcCChhhcc----------CCCCCCcCCcCCC
Confidence            5566778999999887221          1456899998864

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=82.84  E-value=0.46  Score=40.12  Aligned_cols=40  Identities=23%  Similarity=0.519  Sum_probs=27.8

Q ss_pred             ccccccccccCeeeccCCCccccccCCCCCcccceecCceeeCccCCc
Q 020988           49 ERNQTLELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT   96 (319)
Q Consensus        49 ~~~~~~~~~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~   96 (319)
                      +..-........+.||.|+..+...++        ....|.|+.||..
T Consensus       106 k~~l~~e~~~~~Y~Cp~C~~rytf~eA--------~~~~F~Cp~Cg~~  145 (178)
T PRK06266        106 KEQLEEEENNMFFFCPNCHIRFTFDEA--------MEYGFRCPQCGEM  145 (178)
T ss_pred             HHHhhhccCCCEEECCCCCcEEeHHHH--------hhcCCcCCCCCCC
Confidence            333444556679999999987665442        1257899999975

>COG0863 DNA modification methylase [DNA replication, recombination, and repair]

Probab=82.80  E-value=5.7  Score=35.92  Aligned_cols=55  Identities=13%  Similarity=0.202  Sum_probs=46.3

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhh
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ  212 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~  212 (319)
                      .+.+... ...++..|||.=+|+|..+..+...+.  ..+|+|+++..++.+.+++..
T Consensus       212 ~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~~r--~~ig~e~~~~y~~~~~~r~~~  266 (302)
T COG0863         212 IERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNLGR--RFIGIEINPEYVEVALKRLQE  266 (302)
T ss_pred             HHHHHHh-cCCCCCEEeecCCCCChHHHHHHHcCC--ceEEEecCHHHHHHHHHHHHh
Confidence            3444433 456899999999999999998888876  999999999999999999865

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=82.28  E-value=0.5  Score=39.11  Aligned_cols=37  Identities=19%  Similarity=0.435  Sum_probs=26.4

Q ss_pred             cccccccCeeeccCCCccccccCCCCCcccceecCceeeCccCCc
Q 020988           52 QTLELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT   96 (319)
Q Consensus        52 ~~~~~~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~   96 (319)
                      -........+.||.|+..+...+.        ....|.|+.||..
T Consensus       101 l~~e~~~~~Y~Cp~c~~r~tf~eA--------~~~~F~Cp~Cg~~  137 (158)
T TIGR00373       101 LEFETNNMFFICPNMCVRFTFNEA--------MELNFTCPRCGAM  137 (158)
T ss_pred             HhhccCCCeEECCCCCcEeeHHHH--------HHcCCcCCCCCCE
Confidence            334456689999999987655442        1246899999975

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>PF09855 DUF2082: Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082); InterPro: IPR018652 This family of proteins contains various hypothetical prokaryotic proteins as well as some Zn-ribbon nucleic-acid-binding proteins

Probab=82.18  E-value=0.88  Score=31.53  Aligned_cols=10  Identities=30%  Similarity=0.773  Sum_probs=8.3

Q ss_pred             ceeeCccCCc
Q 020988           87 GFKCRKCDKT   96 (319)
Q Consensus        87 ~~~C~~Cg~~   96 (319)
                      ...|++||++
T Consensus        36 ~v~C~~CGYT   45 (64)
T PF09855_consen   36 TVSCTNCGYT   45 (64)
T ss_pred             EEECCCCCCE
Confidence            5689999985

>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454

Probab=81.77  E-value=0.23  Score=40.38  Aligned_cols=48  Identities=29%  Similarity=0.573  Sum_probs=27.6

Q ss_pred             CeeeccCCCccccccC--CCCCcccceecCceeeCccCCccccCCceeee
Q 020988           59 DLFSCPICYEPLIRKG--PTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDL  106 (319)
Q Consensus        59 ~~l~CP~C~~~l~~~~--~~~~~~~~i~~~~~~C~~Cg~~f~~~~g~~~~  106 (319)
                      .+-.||.|+.+..-.-  +..+..+.-+...-.|.+||+.||..+..++.
T Consensus        38 tI~~Cp~C~~~IrG~y~v~gv~~~g~~~~~PsYC~~CGkpyPWt~~~L~a   87 (158)
T PF10083_consen   38 TITSCPNCSTPIRGDYHVEGVFGLGGHYEAPSYCHNCGKPYPWTENALEA   87 (158)
T ss_pred             HHHHCcCCCCCCCCceecCCeeeeCCCCCCChhHHhCCCCCchHHHHHHH
Confidence            4678999998653211  11111111222345799999999876554443

The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=81.61  E-value=3.3  Score=33.57  Aligned_cols=38  Identities=21%  Similarity=0.165  Sum_probs=25.1

Q ss_pred             EEcCCcC--hHHHHHH--hhCCCCeEEEEeCCHHHHHHHHHH
Q 020988          172 DVSCGSG--LFSRKFA--KSGTYSGVVALDFSENMLRQCYDF  209 (319)
Q Consensus       172 DiGcG~G--~~~~~l~--~~g~~~~v~gvD~s~~~l~~a~~~  209 (319)
                      |||++.|  .....+.  ..++..+|+++|+++...+..+++
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~   42 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN   42 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence            8999999  5544443  446677999999999999988888

; PDB: 2PY6_A.

>PF08996 zf-DNA_Pol: DNA Polymerase alpha zinc finger; InterPro: IPR015088 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=81.60  E-value=1.1  Score=38.12  Aligned_cols=39  Identities=21%  Similarity=0.409  Sum_probs=20.7

Q ss_pred             CeeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      =.++||.|+......+....+...+....+.|++|+..+
T Consensus        17 l~~~C~~C~~~~~f~g~~~~~~~~~~~~~~~C~~C~~~~   55 (188)
T PF08996_consen   17 LKLTCPSCGTEFEFPGVFEEDGDDVSPSGLQCPNCSTPL   55 (188)
T ss_dssp             EEEE-TTT--EEEE-SSS--SSEEEETTEEEETTT--B-
T ss_pred             eEeECCCCCCCccccccccCCccccccCcCcCCCCCCcC
Confidence            367899999976665543333445555788999999855

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The DNA Polymerase alpha zinc finger domain adopts an alpha-helix-like structure, followed by three turns, all of which involve proline. The resulting motif is a helix-turn-helix motif, in contrast to other zinc finger domains, which show anti-parallel sheet and helix conformation. Zinc binding occurs due to the presence of four cysteine residues positioned to bind the metal centre in a tetrahedral coordination geometry. The function of this domain is uncertain: it has been proposed that the zinc finger motif may be an essential part of the DNA binding domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0001882 nucleoside binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3FLO_D 1N5G_A 1K0P_A 1K18_A.

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=81.48  E-value=7.4  Score=38.48  Aligned_cols=95  Identities=19%  Similarity=0.174  Sum_probs=63.1

Q ss_pred             cCCCeEEEEcCCc-ChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC------------
Q 020988          165 AQGGLLVDVSCGS-GLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR------------  230 (319)
Q Consensus       165 ~~~~~VLDiGcG~-G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~------------  230 (319)
                      .++.++|=+|+|. |..+..+++. |.  .|+++|.+++.++.+++ +         +.+++..|..+            
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~lGA--~V~v~d~~~~rle~a~~-l---------Ga~~v~v~~~e~g~~~~gYa~~~  229 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSLGA--IVRAFDTRPEVKEQVQS-M---------GAEFLELDFKEEGGSGDGYAKVM  229 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHH-c---------CCeEEeccccccccccccceeec
Confidence            4678999999996 5666555555 44  79999999998777775 2         22333333211            


Q ss_pred             -----------CCCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeE
Q 020988          231 -----------LPFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICY  271 (319)
Q Consensus       231 -----------lp~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g  271 (319)
                                 ++-.-..+|+|+..-.+..-+.|.-..+++.+.+|+|....
T Consensus       230 s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIV  281 (511)
T TIGR00561       230 SEEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIV  281 (511)
T ss_pred             CHHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEE
Confidence                       11112469999887766666666556788888888886533

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>TIGR03831 YgiT_finger YgiT-type zinc finger domain

Probab=81.39  E-value=0.77  Score=29.05  Aligned_cols=12  Identities=25%  Similarity=0.869  Sum_probs=9.7

Q ss_pred             ceeeCccCCccc
Q 020988           87 GFKCRKCDKTYS   98 (319)
Q Consensus        87 ~~~C~~Cg~~f~   98 (319)
                      .+.|++||..|.
T Consensus        32 ~~~C~~CGE~~~   43 (46)
T TIGR03831        32 ALVCPQCGEEYL   43 (46)
T ss_pred             ccccccCCCEee
Confidence            557999999874

This domain model describes a small domain with two copies of a putative zinc-binding motif CXXC (usually CXXCG). Most member proteins consist largely of this domain or else carry an additional C-terminal helix-turn-helix domain, resembling that of the phage protein Cro and modeled by pfam01381.

>COG2824 PhnA Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]

Probab=81.33  E-value=0.86  Score=34.53  Aligned_cols=29  Identities=21%  Similarity=0.604  Sum_probs=23.4

Q ss_pred             eeeccCCCccccccCCCCCcccceecCceeeCccCCccc
Q 020988           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (319)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~   98 (319)
                      +-.||.|++....++.          ..+.|+.|++.+.
T Consensus         3 lp~cp~c~sEytYed~----------~~~~cpec~~ew~   31 (112)
T COG2824           3 LPPCPKCNSEYTYEDG----------GQLICPECAHEWN   31 (112)
T ss_pred             CCCCCccCCceEEecC----------ceEeCchhccccc
Confidence            4469999998776653          5789999999884

>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]

Probab=80.80  E-value=1.1  Score=38.93  Aligned_cols=88  Identities=14%  Similarity=0.114  Sum_probs=62.7

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC--
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--  232 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--  232 (319)
                      .+.+.+++.+.++.+.+|.--|.|..+..+.+..+..+++++|.+|-+.+.|+....+.   ..+.+.-+.+.+..++  
T Consensus        32 ~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~el---~~~~l~a~Lg~Fs~~~~l  108 (303)
T KOG2782|consen   32 LDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSDEL---MHPTLKAVLGNFSYIKSL  108 (303)
T ss_pred             hhhHHHHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhHhh---cchhHHHHHhhhHHHHHH
Confidence            46677888899999999999999999999999988888999999998877777654321   1222222333333322  


Q ss_pred             -----CCCCCccEEEecc
Q 020988          233 -----FASGFVDAVHAGA  245 (319)
Q Consensus       233 -----~~~~~fD~V~~~~  245 (319)
                           +.+.++|-|++-.
T Consensus       109 ~~~~gl~~~~vDGiLmDl  126 (303)
T KOG2782|consen  109 IADTGLLDVGVDGILMDL  126 (303)
T ss_pred             HHHhCCCcCCcceEEeec
Confidence                 4466777777644

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=80.53  E-value=4.6  Score=30.82  Aligned_cols=60  Identities=18%  Similarity=0.121  Sum_probs=40.0

Q ss_pred             CCcChHHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC----CCCCCccEEEec
Q 020988          175 CGSGLFSRKFAKSG--TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----FASGFVDAVHAG  244 (319)
Q Consensus       175 cG~G~~~~~l~~~g--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----~~~~~fD~V~~~  244 (319)
                      ||.|.++..+++..  ....|+.+|.+++.++.+++.          .+.++.+|..+..    ..-+..|.|++.
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~   69 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----------GVEVIYGDATDPEVLERAGIEKADAVVIL   69 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----------TSEEEES-TTSHHHHHHTTGGCESEEEEE
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----------ccccccccchhhhHHhhcCccccCEEEEc
Confidence            56666666665541  123899999999988887763          4779999998743    223567877774

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK10458 DNA cytosine methylase; Provisional

Probab=80.51  E-value=12  Score=36.60  Aligned_cols=73  Identities=16%  Similarity=0.201  Sum_probs=49.0

Q ss_pred             HHHHHHHHhhccC------CCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcC
Q 020988          154 EFKMAQEYFKSAQ------GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD  227 (319)
Q Consensus       154 ~~~~l~~~l~~~~------~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d  227 (319)
                      +...+..+++..+      ..+++|+=||.|.+..-+...|. ..|.++|+++.+.+.-+.+...     .+....+.+|
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~iDLFsGiGGl~lGfe~aG~-~~v~a~Eid~~A~~TY~~N~~~-----~p~~~~~~~D  142 (467)
T PRK10458         69 EFAHLQTLLPKPPAHHPHYAFRFIDLFAGIGGIRRGFEAIGG-QCVFTSEWNKHAVRTYKANWYC-----DPATHRFNED  142 (467)
T ss_pred             HHHHHHHhcccCcccCcCCCceEEEeCcCccHHHHHHHHcCC-EEEEEEechHHHHHHHHHHcCC-----CCccceeccC
Confidence            3455666654332      45899999999999999988775 4678999999877766665411     1233445566


Q ss_pred             CCCCC
Q 020988          228 VCRLP  232 (319)
Q Consensus       228 ~~~lp  232 (319)
                      +.++.
T Consensus       143 I~~i~  147 (467)
T PRK10458        143 IRDIT  147 (467)
T ss_pred             hhhCc
Confidence            65553

>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional

Probab=80.40  E-value=1.1  Score=34.88  Aligned_cols=58  Identities=14%  Similarity=0.144  Sum_probs=33.9

Q ss_pred             CCCcchhhhhhhhhhhccCCcccccccccccccCeeeccCCCccccccCCCCCcccceecCceeeCccCCc
Q 020988           26 PRLPQSLRFSSTIRAVTLQPAKSERNQTLELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT   96 (319)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~   96 (319)
                      --.|-++|++-.  ++.......+..-.-........|+.|+.......           ..+.||.||..
T Consensus        38 ~v~pe~L~f~f~--~~~~~T~~egA~L~I~~vp~~~~C~~Cg~~~~~~~-----------~~~~CP~Cgs~   95 (113)
T PRK12380         38 CVEESAVRFSFE--IVCHGTVAQGCDLHIVYKPAQAWCWDCSQVVEIHQ-----------HDAQCPHCHGE   95 (113)
T ss_pred             ccCHHHHHHHHH--HHhCCCccCCCEEEEEeeCcEEEcccCCCEEecCC-----------cCccCcCCCCC
Confidence            345666777662  22223223333333444557889999997654432           34569999964

>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]

Probab=80.15  E-value=1.2  Score=29.02  Aligned_cols=30  Identities=17%  Similarity=0.460  Sum_probs=21.8

Q ss_pred             CeeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      -.+.|-.|+..+.....         ....+|+.||+.-
T Consensus         5 ~~Y~C~~Cg~~~~~~~~---------~~~irCp~Cg~rI   34 (49)
T COG1996           5 MEYKCARCGREVELDQE---------TRGIRCPYCGSRI   34 (49)
T ss_pred             EEEEhhhcCCeeehhhc---------cCceeCCCCCcEE
Confidence            46889999997742211         2568999999975

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	319
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	4e-15
3ege_A	261	Putative methyltransferase from antibiotic biosyn	4e-15
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	6e-15
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	3e-14
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	4e-14
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	1e-13
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	3e-12
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	4e-12
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	4e-12
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	5e-12
1xxl_A	239	YCGJ protein; structural genomics, protein structu	5e-12
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	5e-12
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	6e-12
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	1e-11
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	1e-11
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	1e-11
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	2e-11
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	3e-11
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	4e-11
3i9f_A	170	Putative type 11 methyltransferase; structural gen	4e-11
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	6e-11
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	9e-11
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	1e-10
3f4k_A	257	Putative methyltransferase; structural genomics, P	1e-10
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	2e-10
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	4e-10
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	8e-10
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	2e-09
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	2e-09
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	2e-09
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	2e-09
3ocj_A	305	Putative exported protein; structural genomics, PS	2e-09
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	2e-09
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	3e-09
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	3e-09
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	5e-08
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	6e-08
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	7e-08
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	1e-07
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	1e-07
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	2e-07
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	3e-07
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	4e-07
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	6e-07
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	6e-07
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	9e-07
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	1e-06
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	1e-06
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	1e-06
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	1e-06
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	4e-06
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	8e-06
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	2e-05
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	2e-05
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	4e-05
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	2e-04
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	4e-04
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	7e-04
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	8e-04

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 72.1 bits (177), Expect = 4e-15
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 3/91 (3%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
             G  +D+  G G  S   AK   +S + ALDFS++M       I   N  L   + +V+
Sbjct: 43  TAGTCIDIGSGPGALSIALAKQSDFS-IRALDFSKHMNEIALKNIADAN--LNDRIQIVQ 99

Query: 226 ADVCRLPFASGFVDAVHAGAALHCWPSPSNA 256
            DV  +P    + D + +  ++  W   + A
Sbjct: 100 GDVHNIPIEDNYADLIVSRGSVFFWEDVATA 130

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261

 Score = 73.0 bits (179), Expect = 4e-15
 Identities = 18/111 (16%), Positives = 33/111 (29%), Gaps = 11/111 (9%)

Query: 146 SGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQ 205
                               +G ++ D+  G+G +S   A  G +  V A++ S  M +Q
Sbjct: 14  QTRVPDIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLF--VYAVEPSIVMRQQ 71

Query: 206 CYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNA 256
                          +         L      VD V +  A+H +     +
Sbjct: 72  AVVH---------PQVEWFTGYAENLALPDKSVDGVISILAIHHFSHLEKS 113

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269

 Score = 72.6 bits (178), Expect = 6e-15
 Identities = 36/197 (18%), Positives = 67/197 (34%), Gaps = 37/197 (18%)

Query: 61  FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKP 120
           FSCP+C++PL R+            + + C +  +   +K+ Y++L  +   +       
Sbjct: 3   FSCPLCHQPLSREK-----------NSYICPQRHQFDMAKEGYVNLLPVQHKRSRDPGDS 51

Query: 121 ASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLF 180
           A     R  F+   + +  R                  +E        +L D+ CG G +
Sbjct: 52  AEMMQARRAFLDAGHYQPLRDAIVA-----------QLRERLDDKATAVL-DIGCGEGYY 99

Query: 181 SRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 240
           +  FA +        LD S+  ++                +    A   RLPF+   +DA
Sbjct: 100 THAFADALPEITTFGLDVSKVAIKAA--------AKRYPQVTFCVASSHRLPFSDTSMDA 151

Query: 241 VHAGAALHCWPSPSNAA 257
           +          +P  A 
Sbjct: 152 I------IRIYAPCKAE 162

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 70.7 bits (173), Expect = 3e-14
 Identities = 19/90 (21%), Positives = 39/90 (43%), Gaps = 3/90 (3%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226
           G  +++  CG G  +   AK+   + + ++D S   L +  +  +++      N+  ++A
Sbjct: 38  GAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNG---IKNVKFLQA 94

Query: 227 DVCRLPFASGFVDAVHAGAALHCWPSPSNA 256
           ++  LPF     D +     L    SP  A
Sbjct: 95  NIFSLPFEDSSFDHIFVCFVLEHLQSPEEA 124

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263

 Score = 70.0 bits (171), Expect = 4e-14
 Identities = 21/114 (18%), Positives = 37/114 (32%), Gaps = 8/114 (7%)

Query: 145 RSGFPGPDEEF--KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENM 202
           R+  P    +    MA       +  + +++  G+G  +      G     +ALD    M
Sbjct: 16  RAHPPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARGYR--YIALDADAAM 73

Query: 203 LRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNA 256
           L       +Q    +   + +V+AD   +P     V  V      H  P     
Sbjct: 74  LEVF----RQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWHLVPDWPKV 123

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 68.4 bits (167), Expect = 1e-13
 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 8/85 (9%)

Query: 172 DVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231
           DV CG G  + K +++G     V +D SE M+++     K+       +L+ ++ D+  L
Sbjct: 59  DVGCGDGYGTYKLSRTGYK--AVGVDISEVMIQKG----KERG--EGPDLSFIKGDLSSL 110

Query: 232 PFASGFVDAVHAGAALHCWPSPSNA 256
           PF +   +A+ A  +L     P  A
Sbjct: 111 PFENEQFEAIMAINSLEWTEEPLRA 135

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 64.6 bits (157), Expect = 3e-12
 Identities = 21/102 (20%), Positives = 37/102 (36%), Gaps = 10/102 (9%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
               ++D+ CG G      A+ G    V+ +D SE ML +     K+  T  +  +   +
Sbjct: 44  NQKTVLDLGCGFGWHCIYAAEHG-AKKVLGIDLSERMLTEA----KRKTT--SPVVCYEQ 96

Query: 226 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLL 267
             +  +       + V +  ALH   S      +    Y  L
Sbjct: 97  KAIEDIAIEPDAYNVVLSSLALHYIASF---DDICKKVYINL 135

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211

 Score = 63.7 bits (155), Expect = 4e-12
 Identities = 20/90 (22%), Positives = 27/90 (30%), Gaps = 12/90 (13%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226
           G  L++V  G+G + R+          V ++ SE ML                    VRA
Sbjct: 37  GESLLEVGAGTGYWLRRLPYPQ----KVGVEPSEAMLAVGRR--------RAPEATWVRA 84

Query: 227 DVCRLPFASGFVDAVHAGAALHCWPSPSNA 256
               LPF     D V     L         
Sbjct: 85  WGEALPFPGESFDVVLLFTTLEFVEDVERV 114

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260

 Score = 64.4 bits (157), Expect = 4e-12
 Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 5/90 (5%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226
              ++DV+ G G  +  FA       VVA D +E++L+    FI+ +       +  V+ 
Sbjct: 38  NEEVLDVATGGGHVANAFAPFVKK--VVAFDLTEDILKVARAFIEGNGH---QQVEYVQG 92

Query: 227 DVCRLPFASGFVDAVHAGAALHCWPSPSNA 256
           D  ++PF       V    A H +P+P++ 
Sbjct: 93  DAEQMPFTDERFHIVTCRIAAHHFPNPASF 122

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235

 Score = 63.6 bits (155), Expect = 5e-12
 Identities = 24/136 (17%), Positives = 45/136 (33%), Gaps = 7/136 (5%)

Query: 134 LYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGV 193
           + E  W +  +    P   + + +   Y +  +   ++D+ CGSG  S + A  G    V
Sbjct: 1   MPESYWEK-VSGKNIPSSLDLYPIIHNYLQ--EDDEILDIGCGSGKISLELASKG--YSV 55

Query: 194 VALDFSENMLRQCYDFIKQD--NTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWP 251
             +D +   +R      +    N            +   L F     D     A L   P
Sbjct: 56  TGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQAFLTSVP 115

Query: 252 SPSNAASVFSSSYSLL 267
            P   + +    + +L
Sbjct: 116 DPKERSRIIKEVFRVL 131

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score = 63.7 bits (155), Expect = 5e-12
 Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 5/90 (5%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226
              ++D+  G+G  +  F+        + +D ++ M+     F ++       N+   + 
Sbjct: 22  EHRVLDIGAGAGHTALAFSPYVQE--CIGVDATKEMVEVASSFAQEKGV---ENVRFQQG 76

Query: 227 DVCRLPFASGFVDAVHAGAALHCWPSPSNA 256
               LPF     D +    A H +     A
Sbjct: 77  TAESLPFPDDSFDIITCRYAAHHFSDVRKA 106

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 63.4 bits (154), Expect = 5e-12
 Identities = 26/124 (20%), Positives = 52/124 (41%), Gaps = 14/124 (11%)

Query: 138 GWRQNFNRSG--FPGPDEEFKMAQEYFKS------AQGGLLVDVSCGSGLFSRKFAKSGT 189
           G+++ +           +E++   E  +        + G ++D++CG G FS      G 
Sbjct: 2   GFKEYYRVFPTYTDINSQEYRSRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYG- 60

Query: 190 YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHC 249
           +  VV +D SE+M+R+  ++ K       SN+  +  D  +L F     D V    ++  
Sbjct: 61  FE-VVGVDISEDMIRKAREYAKSRE----SNVEFIVGDARKLSFEDKTFDYVIFIDSIVH 115

Query: 250 WPSP 253
           +   
Sbjct: 116 FEPL 119

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 64.2 bits (156), Expect = 6e-12
 Identities = 16/113 (14%), Positives = 31/113 (27%), Gaps = 6/113 (5%)

Query: 145 RSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENML 203
           R  +   D    +    +K  +   +VD  CG G                  +D  E +L
Sbjct: 1   RDLYYNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLL 60

Query: 204 RQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNA 256
            +  +  +        +   +  D   +     + D     A L    +P   
Sbjct: 61  AEARELFRLLP----YDSEFLEGDATEIELNDKY-DIAICHAFLLHMTTPETM 108

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score = 62.2 bits (151), Expect = 1e-11
 Identities = 16/109 (14%), Positives = 40/109 (36%), Gaps = 6/109 (5%)

Query: 145 RSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLR 204
           ++    P    +  +   +S     ++D   G  L          Y     ++ S+  L+
Sbjct: 3   KTIIRQPQLY-RFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYK-TYGIEISDLQLK 60

Query: 205 QCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSP 253
           +  +F +++N      L + + D+ +LPF    +  V++   +      
Sbjct: 61  KAENFSRENN----FKLNISKGDIRKLPFKDESMSFVYSYGTIFHMRKN 105

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 62.4 bits (152), Expect = 1e-11
 Identities = 22/114 (19%), Positives = 46/114 (40%), Gaps = 8/114 (7%)

Query: 144 NRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENM 202
           +R     P++  K     F   +G  ++DV  G+G +    +K     G V A+D  E M
Sbjct: 19  SRLELFDPEKVLKE----FGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEM 74

Query: 203 LRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNA 256
           +   ++ + +       N+ +++++  ++P     VD +      H    P   
Sbjct: 75  VNYAWEKVNKLGL---KNVEVLKSEENKIPLPDNTVDFIFMAFTFHELSEPLKF 125

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243

 Score = 62.9 bits (153), Expect = 1e-11
 Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 7/93 (7%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
            G  +VD+ CG G F R   + G  S V+ LD SE ML +     +       + +   R
Sbjct: 43  GGLRIVDLGCGFGWFCRWAHEHG-ASYVLGLDLSEKMLARA----RAAGP--DTGITYER 95

Query: 226 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAAS 258
           AD+ +L       D  ++  ALH     +    
Sbjct: 96  ADLDKLHLPQDSFDLAYSSLALHYVEDVARLFR 128

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203

 Score = 61.7 bits (150), Expect = 2e-11
 Identities = 13/129 (10%), Positives = 38/129 (29%), Gaps = 13/129 (10%)

Query: 139 WRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDF 198
                         +   +    + +   G+++DV  G+G ++   A  G    +  L+ 
Sbjct: 16  AEALLGTVISAEDPDRVLIEP--WATGVDGVILDVGSGTGRWTGHLASLGHQ--IEGLEP 71

Query: 199 SENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAAS 258
           +  ++       +Q +     ++      +  L  +      + A  +L     P     
Sbjct: 72  ATRLVELA----RQTHP----SVTFHHGTITDLSDSPKRWAGLLAWYSLI-HMGPGELPD 122

Query: 259 VFSSSYSLL 267
              +    +
Sbjct: 123 ALVALRMAV 131

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 61.4 bits (149), Expect = 3e-11
 Identities = 19/128 (14%), Positives = 38/128 (29%), Gaps = 14/128 (10%)

Query: 143 FNRSGFPGPDEEFKMAQEYFKSAQ---GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFS 199
           F +       E F   ++  +       G +++   G+G  + K   +G    V  ++ S
Sbjct: 19  FVQGEDIQYKEVFAHYEDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGRT--VYGIEPS 76

Query: 200 ENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAASV 259
             M        K+    L    ++   D       +   D + +  A H           
Sbjct: 77  REMRMIA----KEK---LPKEFSITEGDFLSFEVPTSI-DTIVSTYAFHHLTDDEKNV-A 127

Query: 260 FSSSYSLL 267
            +    LL
Sbjct: 128 IAKYSQLL 135

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 60.6 bits (147), Expect = 4e-11
 Identities = 16/103 (15%), Positives = 34/103 (33%), Gaps = 10/103 (9%)

Query: 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV 224
            +G  ++D  CG G      +K G +  V+  D    ++       KQD          V
Sbjct: 45  PRGAKILDAGCGQGRIGGYLSKQG-HD-VLGTDLDPILIDYA----KQDF----PEARWV 94

Query: 225 RADVCRLPFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLL 267
             D+     +    D + +   +  + +        ++ +  L
Sbjct: 95  VGDLSVDQISETDFDLIVSAGNVMGFLAEDGREPALANIHRAL 137

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 59.7 bits (145), Expect = 4e-11
 Identities = 12/91 (13%), Positives = 29/91 (31%), Gaps = 13/91 (14%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
           + G++VD  CG+G + +   +    + +  +D +   L++           +      V 
Sbjct: 17  KKGVIVDYGCGNGFYCKYLLEFA--TKLYCIDINVIALKE-----------VKEKFDSVI 63

Query: 226 ADVCRLPFASGFVDAVHAGAALHCWPSPSNA 256
                       VD +    + H      + 
Sbjct: 64  TLSDPKEIPDNSVDFILFANSFHDMDDKQHV 94

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 61.1 bits (148), Expect = 6e-11
 Identities = 25/115 (21%), Positives = 43/115 (37%), Gaps = 5/115 (4%)

Query: 141 QNFNRSGFPGPDEEFKMAQEYFKSAQGGLLV-DVSCGSGLFSRKFAKSGTYSGVVALDFS 199
            N  R G PG  E    A  +  +     L+ D+ CG+G  +   A   T   V  LDF 
Sbjct: 21  SNMERQG-PGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQ-VTGLDFL 78

Query: 200 ENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPS 254
              +       +Q    L + +  +   +  LPF +  +D + +  A++      
Sbjct: 79  SGFIDIFNRNARQSG--LQNRVTGIVGSMDDLPFRNEELDLIWSEGAIYNIGFER 131

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 59.8 bits (145), Expect = 9e-11
 Identities = 20/136 (14%), Positives = 47/136 (34%), Gaps = 22/136 (16%)

Query: 132 SFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYS 191
              ++  +  + + +                       ++D+  G+GL S    +    +
Sbjct: 25  IPCFDDFYGVSVSIASVDTE---------------NPDILDLGAGTGLLSAFLMEKYPEA 69

Query: 192 GVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWP 251
               +D SE ML    +  + +       +  + AD  +  F   + D V +  ++H   
Sbjct: 70  TFTLVDMSEKMLEIAKNRFRGN-----LKVKYIEADYSKYDFEEKY-DMVVSALSIH-HL 122

Query: 252 SPSNAASVFSSSYSLL 267
              +   ++  SYS+L
Sbjct: 123 EDEDKKELYKRSYSIL 138

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219

 Score = 59.1 bits (143), Expect = 1e-10
 Identities = 13/90 (14%), Positives = 26/90 (28%), Gaps = 16/90 (17%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226
            G  V++  G+G F+            + ++ SE M         +        + +++ 
Sbjct: 48  EGRGVEIGVGTGRFAVPLKI------KIGVEPSERMAEIA-----RKR-----GVFVLKG 91

Query: 227 DVCRLPFASGFVDAVHAGAALHCWPSPSNA 256
               LP      D       +     P  A
Sbjct: 92  TAENLPLKDESFDFALMVTTICFVDDPERA 121

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 59.5 bits (144), Expect = 1e-10
 Identities = 22/133 (16%), Positives = 46/133 (34%), Gaps = 12/133 (9%)

Query: 119 KPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLV-DVSCGS 177
              S   F   F+   ++   RQ       PG  E  + A  +         + D+ CG+
Sbjct: 4   NNTSIHDFDFSFICNYFKLLKRQG------PGSPEATRKAVSFINELTDDAKIADIGCGT 57

Query: 178 GLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG 236
           G  +   A      G +  +D   + +    +   + N      +  +   +  LPF + 
Sbjct: 58  GGQTLFLAD--YVKGQITGIDLFPDFIEIFNENAVKAN--CADRVKGITGSMDNLPFQNE 113

Query: 237 FVDAVHAGAALHC 249
            +D + +  A++ 
Sbjct: 114 ELDLIWSEGAIYN 126

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273

 Score = 59.4 bits (144), Expect = 2e-10
 Identities = 27/128 (21%), Positives = 41/128 (32%), Gaps = 18/128 (14%)

Query: 134 LYERGWRQNFNRS--GFPGPDEEFKMAQEYFK---SAQGGL-----LVDVSCGSGLFSRK 183
            + R W +N +       G D     A +       A   +     ++DV CG G  + +
Sbjct: 19  PFARIWGENLHFGYWEDAGADVSVDDATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVR 78

Query: 184 FAKSGTYSG--VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 241
            A         V  +  S   + Q           L + +    AD   LPF     DAV
Sbjct: 79  LAT---ARDVRVTGISISRPQVNQANARATAAG--LANRVTFSYADAMDLPFEDASFDAV 133

Query: 242 HA-GAALH 248
            A  +  H
Sbjct: 134 WALESLHH 141

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218

 Score = 58.0 bits (140), Expect = 4e-10
 Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 10/93 (10%)

Query: 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV 224
              G +++++ G+G ++R  +       V ALD S  M+ +              N+   
Sbjct: 45  NIRGDVLELASGTGYWTRHLSGLADR--VTALDGSAEMIAEA-------GRHGLDNVEFR 95

Query: 225 RADVCRLPFASGFVDAVHAGAALHCWPSPSNAA 257
           + D+        + DAV     L   P     A
Sbjct: 96  QQDLFDWTPDRQW-DAVFFAHWLAHVPDDRFEA 127

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260

 Score = 57.6 bits (139), Expect = 8e-10
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 12/83 (14%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226
              ++D+  G+G +S    + G    VV +D S+ ML    +   ++         +V A
Sbjct: 55  PCRVLDLGGGTGKWSLFLQERGFE--VVLVDPSKEMLEVAREKGVKN---------VVEA 103

Query: 227 DVCRLPFASGFVDAVHA-GAALH 248
               LPF SG  +AV A G  L 
Sbjct: 104 KAEDLPFPSGAFEAVLALGDVLS 126

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215

 Score = 56.2 bits (135), Expect = 2e-09
 Identities = 19/101 (18%), Positives = 30/101 (29%), Gaps = 6/101 (5%)

Query: 172 DVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231
            + CG+   S +    G +  V ++D+S  ++                 L     DV +L
Sbjct: 48  VLGCGNSALSYELFLGG-FPNVTSVDYSSVVVAAMQACYAHVP-----QLRWETMDVRKL 101

Query: 232 PFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYL 272
            F S   D V     L    +        SS         L
Sbjct: 102 DFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVL 142

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246

 Score = 56.3 bits (136), Expect = 2e-09
 Identities = 17/119 (14%), Positives = 36/119 (30%), Gaps = 10/119 (8%)

Query: 152 DEEFKMAQEYFKSA--QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDF 209
            +      E            +D++CG+G  +         +   A+D S+ ML +  + 
Sbjct: 21  KKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKF-KN-TWAVDLSQEMLSEAENK 78

Query: 210 IKQDNTILTSNLALVRADVCRLPFASGFVDAVH-AGAALHCWPSPSNAASVFSSSYSLL 267
            +           L   D+  L     F D +     + +      +    F +  + L
Sbjct: 79  FRSQG----LKPRLACQDISNLNINRKF-DLITCCLDSTNYIIDSDDLKKYFKAVSNHL 132

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259

 Score = 56.4 bits (136), Expect = 2e-09
 Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 10/80 (12%)

Query: 171 VDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230
            D+ CG G  +         + +  +D  ++ML +              N    +AD+  
Sbjct: 38  YDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKA----AD----RLPNTNFGKADLAT 89

Query: 231 LPFASGFVDAVHAGAALHCW 250
              A    D ++A A    W
Sbjct: 90  WKPAQKA-DLLYANAVFQ-W 107

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299

 Score = 56.6 bits (136), Expect = 2e-09
 Identities = 23/113 (20%), Positives = 38/113 (33%), Gaps = 10/113 (8%)

Query: 151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENMLRQCYDF 209
           P + +KM  EY       LLVDV CG G  + + A+       ++  D S  M++     
Sbjct: 22  PSDFYKMIDEYHDGE-RKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVI 80

Query: 210 IKQDNTILTSNLALVRADVCRLPFAS------GFVDAVHAGAALHCWPSPSNA 256
            +        N++   +      F          +D + A    H W      
Sbjct: 81  KEGSPDTY-KNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAH-WFDFEKF 131

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 56.6 bits (136), Expect = 2e-09
 Identities = 17/102 (16%), Positives = 31/102 (30%), Gaps = 4/102 (3%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
           G ++  V CG          S      +V +D+    L             L   + L R
Sbjct: 119 GCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHA--LAGQITLHR 176

Query: 226 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLL 267
            D  +L    G+ D + +       P  +    ++   +  L
Sbjct: 177 QDAWKLDTREGY-DLLTSNGLNIYEPDDARVTELYRRFWQAL 217

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243

 Score = 55.9 bits (135), Expect = 2e-09
 Identities = 21/119 (17%), Positives = 39/119 (32%), Gaps = 9/119 (7%)

Query: 151 PDEEFKMAQEYFKS--AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYD 208
            D  +     +       G  + D+ CG+G  +   A       V  +D SE ML    +
Sbjct: 16  QDVPYPEWVAWVLEQVEPGKRIADIGCGTGTATLLLADHYE---VTGVDLSEEMLEIAQE 72

Query: 209 FIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLL 267
              + N     ++     D+  L              +L+   + ++    F S+  LL
Sbjct: 73  KAMETN----RHVDFWVQDMRELELPEPVDAITILCDSLNYLQTEADVKQTFDSAARLL 127

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227

 Score = 55.6 bits (134), Expect = 3e-09
 Identities = 18/102 (17%), Positives = 34/102 (33%), Gaps = 11/102 (10%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
           Q   ++D+ CG G   R  A  G     V +D    ++       +          +  +
Sbjct: 52  QPERVLDLGCGEGWLLRALADRG--IEAVGVDGDRTLVDAA----RAAGAGEVHLASYAQ 105

Query: 226 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLL 267
               ++P    + D + A  AL           + S+  +LL
Sbjct: 106 LAEAKVPVGKDY-DLICANFALL-HQDI---IELLSAMRTLL 142

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279

 Score = 55.9 bits (135), Expect = 3e-09
 Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 11/86 (12%)

Query: 171 VDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230
           +D+ CG+G  + K A+SG    V+  D +  M+ +     +Q+      +L    AD   
Sbjct: 62  LDLGCGTGQLTEKIAQSGAE--VLGTDNAATMIEKA----RQN----YPHLHFDVADARN 111

Query: 231 LPFASGFVDAVHAGAALHCWPSPSNA 256
                   DAV + A LH    P  A
Sbjct: 112 FRVDKPL-DAVFSNAMLHWVKEPEAA 136

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211

 Score = 51.8 bits (124), Expect = 5e-08
 Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 13/101 (12%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226
           G  ++++ CG+G  +     +G +  V A D S  +  +    + +              
Sbjct: 44  GAKILELGCGAGYQAEAMLAAG-FD-VDATDGSPELAAEASRRLGRPV---------RTM 92

Query: 227 DVCRLPFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLL 267
              +L     + DAV A A L   P     A V    +  L
Sbjct: 93  LFHQLDAIDAY-DAVWAHACLLHVP-RDELADVLKLIWRAL 131

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252

 Score = 51.8 bits (124), Expect = 6e-08
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 7/82 (8%)

Query: 160 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTS 219
           +     +   ++D++CG+G+ + + A+ G Y  VV LD  E MLR      K+ N     
Sbjct: 35  KEDAKREVRRVLDLACGTGIPTLELAERG-YE-VVGLDLHEEMLRVARRKAKERN----L 88

Query: 220 NLALVRADVCRLPFASGFVDAV 241
            +  ++ DV  + F + F DAV
Sbjct: 89  KIEFLQGDVLEIAFKNEF-DAV 109

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299

 Score = 51.8 bits (124), Expect = 7e-08
 Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 5/86 (5%)

Query: 158 AQEYFKSA--QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT 215
           A+E+        G +++++ G G  +  F   G +  V AL+ S ++L      + +   
Sbjct: 72  AREFATRTGPVSGPVLELAAGMGRLTFPFLDLG-WE-VTALELSTSVLAAFRKRLAEAPA 129

Query: 216 ILTSNLALVRADVCRLPFASGFVDAV 241
            +     LV+ D+        F   V
Sbjct: 130 DVRDRCTLVQGDMSAFALDKRF-GTV 154

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263

 Score = 51.0 bits (122), Expect = 1e-07
 Identities = 21/119 (17%), Positives = 41/119 (34%), Gaps = 14/119 (11%)

Query: 152 DEEFKMAQEYFKSA--QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDF 209
             E        +    +   L+DV+CG+G+  R  A S   + V  L+ S +ML      
Sbjct: 34  HREAADLAALVRRHSPKAASLLDVACGTGMHLRHLADSF-GT-VEGLELSADMLAIA--- 88

Query: 210 IKQDNTILTSNLALVRADVCRLPFASGFVDAVH-AGAALHCWPSPSNAASVFSSSYSLL 267
            ++ N     +  L   D+        F  AV    +++      +   +      + +
Sbjct: 89  -RRRN----PDAVLHHGDMRDFSLGRRF-SAVTCMFSSIGHLAGQAELDAALERFAAHV 141

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239

 Score = 50.5 bits (121), Expect = 1e-07
 Identities = 22/119 (18%), Positives = 41/119 (34%), Gaps = 14/119 (11%)

Query: 152 DEEFKMAQEYFKSA--QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDF 209
             E     +  +S   +   L+DV+CG+G     F K         L+ SE+ML      
Sbjct: 24  AAEASDIADLVRSRTPEASSLLDVACGTGTHLEHFTKEF-GD-TAGLELSEDMLTHA--- 78

Query: 210 IKQDNTILTSNLALVRADVCRLPFASGFVDAVH-AGAALHCWPSPSNAASVFSSSYSLL 267
            ++       +  L + D+        F  AV    +++    +     +  +S    L
Sbjct: 79  -RKRL----PDATLHQGDMRDFRLGRKF-SAVVSMFSSVGYLKTTEELGAAVASFAEHL 131

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 20/134 (14%), Positives = 42/134 (31%), Gaps = 23/134 (17%)

Query: 134 LYERGW-RQNFNRSGF--PGPDEEFKMAQEYFKSAQGGLL------------VDVSCGSG 178
            Y   W  ++ +   +  P   +E + A           L            +D+  G G
Sbjct: 35  FYFHVWGGEDIHVGLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYG 94

Query: 179 LFSRKFAKSGTYSG--VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG 236
             +R   +     G  +  L+ +    ++  ++  Q    L  N+ +       +P    
Sbjct: 95  GAARFLVR---KFGVSIDCLNIAPVQNKRNEEYNNQAG--LADNITVKYGSFLEIPCEDN 149

Query: 237 FVDAVHA-GAALHC 249
             D + +  A LH 
Sbjct: 150 SYDFIWSQDAFLHS 163

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202

 Score = 49.5 bits (118), Expect = 3e-07
 Identities = 20/129 (15%), Positives = 45/129 (34%), Gaps = 9/129 (6%)

Query: 139 WRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDF 198
           W + F++S +    E              G ++ ++ G G  +   A  G Y  V A+D 
Sbjct: 2   WDERFSQSEYVYGTEPNDFLVSVANQIPQGKILCLAEGEGRNACFLASLG-YE-VTAVDQ 59

Query: 199 SENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAAS 258
           S   L +     ++        +  V++++      +   + +    ++ C    S    
Sbjct: 60  SSVGLAKAKQLAQEKG----VKITTVQSNLADFDIVADAWEGI---VSIFCHLPSSLRQQ 112

Query: 259 VFSSSYSLL 267
           ++   Y  L
Sbjct: 113 LYPKVYQGL 121

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266

 Score = 49.4 bits (118), Expect = 4e-07
 Identities = 23/137 (16%), Positives = 44/137 (32%), Gaps = 16/137 (11%)

Query: 134 LYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSG- 192
           +YE  + +N+  SG     E  K      +  +   ++D+  G G       +     G 
Sbjct: 26  VYEFIFGENYISSGGL---EATKKILSDIELNENSKVLDIGSGLGGGCMYINE---KYGA 79

Query: 193 -VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA-GAALHCW 250
               +D   N++         +     + +     D+    F     D +++  A L   
Sbjct: 80  HTHGIDICSNIVNMA-----NERVSGNNKIIFEANDILTKEFPENNFDLIYSRDAILAL- 133

Query: 251 PSPSNAASVFSSSYSLL 267
            S  N   +F   Y  L
Sbjct: 134 -SLENKNKLFQKCYKWL 149

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241

 Score = 48.9 bits (116), Expect = 6e-07
 Identities = 10/98 (10%), Positives = 27/98 (27%), Gaps = 4/98 (4%)

Query: 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT 215
           +  +E          +D   G G  +++      +  V  +D +E+ L Q   ++ ++  
Sbjct: 69  RFLREGPNKTGTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGK 127

Query: 216 ILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSP 253
                       +          D +     +      
Sbjct: 128 ---RVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQ 162

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 48.9 bits (116), Expect = 6e-07
 Identities = 19/106 (17%), Positives = 38/106 (35%), Gaps = 14/106 (13%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226
              L+D +CG+G  ++  ++      V+ LD S++ L        ++NT   +N++    
Sbjct: 57  ELPLIDFACGNGTQTKFLSQFF--PRVIGLDVSKSALEIA----AKENT--AANISYRLL 108

Query: 227 DVCRLPFASGFVDA-----VHAGAALHCWPSPSNAASVFSSSYSLL 267
           D      A+          ++     H          +  S   LL
Sbjct: 109 DGLVPEQAAQIHSEIGDANIYMRTGFH-HIPVEKRELLGQSLRILL 153

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216

 Score = 47.9 bits (114), Expect = 9e-07
 Identities = 14/96 (14%), Positives = 33/96 (34%), Gaps = 8/96 (8%)

Query: 172 DVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231
           ++ C +G F+ K A       +  +D     + +         T   S+++    D+ + 
Sbjct: 57  EIGCAAGAFTEKLAPHCKR--LTVIDVMPRAIGRA-----CQRTKRWSHISWAATDILQF 109

Query: 232 PFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLL 267
             A  F D +     L+     +   +   +   +L
Sbjct: 110 STAELF-DLIVVAEVLYYLEDMTQMRTAIDNMVKML 144

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199

 Score = 47.5 bits (113), Expect = 1e-06
 Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 6/94 (6%)

Query: 160 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTS 219
           E  K  + G  +D+ CG+G  S   A +G Y  V A D +   +         +N     
Sbjct: 26  EAVKVVKPGKTLDLGCGNGRNSLYLAANG-YD-VDAWDKNAMSIANVERIKSIEN---LD 80

Query: 220 NLALVRADVCRLPFASGFVDAVHAGAALHCWPSP 253
           NL     D+  L F   + D + +   L    + 
Sbjct: 81  NLHTRVVDLNNLTFDRQY-DFILSTVVLMFLEAK 113

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254

 Score = 48.1 bits (114), Expect = 1e-06
 Identities = 11/106 (10%), Positives = 24/106 (22%), Gaps = 7/106 (6%)

Query: 149 PGPD-EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCY 207
              D E  +              +D   G G  ++       Y+    L+  ++ML +  
Sbjct: 75  HDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAK 133

Query: 208 DFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSP 253
             +             + A +          D +            
Sbjct: 134 RELAGM-----PVGKFILASMETATLPPNTYDLIVIQWTAIYLTDA 174

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226

 Score = 47.7 bits (113), Expect = 1e-06
 Identities = 16/102 (15%), Positives = 27/102 (26%), Gaps = 13/102 (12%)

Query: 145 RSGFPGPDEEFKMAQEYFKSAQGGLLV-DVSCGSGLFSRKFAKSGTYSGVVALDFSENML 203
                GPD E        +       V +  CG G  + +F          A DFS  +L
Sbjct: 26  ARVLSGPDPELTFDLWLSRLLTPQTRVLEAGCGHGPDAARFGPQAAR--WAAYDFSPELL 83

Query: 204 RQCYDFIKQDNTILTSNLALVRADV-CRLPFA-SGFVDAVHA 243
           +               +  +   +    LP         + +
Sbjct: 84  KLARA--------NAPHADVYEWNGKGELPAGLGAPFGLIVS 117

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383

 Score = 48.2 bits (114), Expect = 1e-06
 Identities = 20/113 (17%), Positives = 41/113 (36%), Gaps = 15/113 (13%)

Query: 167 GGLLVDVSCGSGLFSRKFAK-SGTYSGVVALDFSENML-----RQCYDFIKQDNTILTSN 220
           G  ++D+ CG+G      +K  G +  V+ +D  +N L        Y   K   +   SN
Sbjct: 84  GATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSN 143

Query: 221 LALVRADV------CRLPFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLL 267
           +  ++  +               VD V +    +   +     ++F   + +L
Sbjct: 144 VRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLSTNK---LALFKEIHRVL 193

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219

 Score = 46.1 bits (109), Expect = 4e-06
 Identities = 16/98 (16%), Positives = 34/98 (34%), Gaps = 2/98 (2%)

Query: 158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN--T 215
                KS     ++D+ CG G       K  ++  +  +D S ++L +  D +K D    
Sbjct: 21  VVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPE 80

Query: 216 ILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSP 253
           +    ++L ++ +          DA      +      
Sbjct: 81  MQRKRISLFQSSLVYRDKRFSGYDAATVIEVIEHLDEN 118

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275

 Score = 45.8 bits (108), Expect = 8e-06
 Identities = 20/97 (20%), Positives = 32/97 (32%), Gaps = 8/97 (8%)

Query: 172 DVSCGSGLFSRKFAKSGTYSG-VVALDFSEN------MLRQCYDFIKQDNTILTSNLALV 224
           ++ CG G  S   A     SG V  +D +         L Q ++ +          +   
Sbjct: 49  EIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFN 108

Query: 225 RADVCRL-PFASGFVDAVHAGAALHCWPSPSNAASVF 260
                 L P A    D V    +L  + S +  A +F
Sbjct: 109 TNLSDDLGPIADQHFDRVVLAHSLWYFASANALALLF 145

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 13/98 (13%), Positives = 28/98 (28%), Gaps = 2/98 (2%)

Query: 158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD--NT 215
                K +    ++D+ CG G   +   K   +  +  +D S   L    + + +     
Sbjct: 21  VVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPR 80

Query: 216 ILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSP 253
                L L++  +          DA      +      
Sbjct: 81  NQWERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLS 118

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286

 Score = 44.2 bits (104), Expect = 2e-05
 Identities = 16/116 (13%), Positives = 36/116 (31%), Gaps = 7/116 (6%)

Query: 133 FLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSG 192
                  ++    S             +  K      ++D+ CG G  S   +  G    
Sbjct: 87  CTLGFYCKKEDYFSKKYNTTAIHGDVVDAAKIISPCKVLDLGCGQGRNSLYLSLLG--YD 144

Query: 193 VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALH 248
           V + D +EN +    +  +++N     N++    D+        + D + +     
Sbjct: 145 VTSWDHNENSIAFLNETKEKENL----NISTALYDINAANIQENY-DFIVSTVVFM 195

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293

 Score = 43.9 bits (103), Expect = 4e-05
 Identities = 15/82 (18%), Positives = 35/82 (42%), Gaps = 7/82 (8%)

Query: 124 ELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRK 183
           + +     + +++       +R+      E         +      ++DV+CG+G+ S  
Sbjct: 20  DQYADGEAARVWQLYIGDTRSRT-----AEYKAWLLGLLRQHGCHRVLDVACGTGVDSIM 74

Query: 184 FAKSGTYSGVVALDFSENMLRQ 205
             + G +S V ++D S+ ML+ 
Sbjct: 75  LVEEG-FS-VTSVDASDKMLKY 94

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A Length = 230

 Score = 40.9 bits (95), Expect = 2e-04
 Identities = 13/108 (12%), Positives = 36/108 (33%), Gaps = 7/108 (6%)

Query: 160 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTS 219
           +     +   ++ +   +G      A       V A++++  ++R+  D   +       
Sbjct: 68  KVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER-----E 122

Query: 220 NLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLL 267
           N+  +  D  +    +  V+ V           P+ A  +  ++   L
Sbjct: 123 NIIPILGDANKPQEYANIVEKVD--VIYEDVAQPNQAEILIKNAKWFL 168

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 39.9 bits (93), Expect = 4e-04
 Identities = 20/109 (18%), Positives = 36/109 (33%), Gaps = 4/109 (3%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
           G  +VD +CG+G  +   A     +G V   D  +  +      +   N  L   + L++
Sbjct: 23  GDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLN--LIDRVTLIK 80

Query: 226 ADVCR-LPFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLL 273
                   +    V AV            S +    ++  +L     LL
Sbjct: 81  DGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELL 129

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* Length = 225

 Score = 39.4 bits (91), Expect = 7e-04
 Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 8/103 (7%)

Query: 155 FKMAQEYFKSAQGG---LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDF-I 210
             ++++      G    + +D+  G G    K A +   +  + +D  +  L       I
Sbjct: 10  VDLSKDELTEIIGQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKII 69

Query: 211 KQDNTILTSNLALVRADVCRLPFA-SGFVDAVHAGAALHCWPS 252
           K+ +    SN+  V A    LPF      D++     L  W +
Sbjct: 70  KKPSKGGLSNVVFVIAAAESLPFELKNIADSIS---ILFPWGT 109

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298

 Score = 39.7 bits (92), Expect = 8e-04
 Identities = 11/102 (10%), Positives = 30/102 (29%), Gaps = 1/102 (0%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
           +G  ++D+ CG G    K+ ++G       +D +E  +       +              
Sbjct: 64  RGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQD 122

Query: 226 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLL 267
           +    +     F       +  + + +  +      +    L
Sbjct: 123 SYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHL 164

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	319
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.82
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.81
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.78
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.77
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.74
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.74
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.74
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.74
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.73
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.73
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.72
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.72
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.72
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.72
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.71
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.71
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.71
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.71
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.7
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.7
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.7
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.7
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.7
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.7
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.7
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.69
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.69
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.69
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.69
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.69
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.69
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.68
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.68
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.68
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.67
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.67
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.66
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.66
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.66
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.66
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.66
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.66
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.66
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.65
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.65
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.65
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.64
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.64
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.64
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.63
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.63
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.63
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.62
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.62
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.62
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.62
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.62
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.62
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.62
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.62
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.6
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.6
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.59
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.59
3ocj_A	305	Putative exported protein; structural genomics, PS	99.59
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.59
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.58
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.58
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.58
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.57
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.57
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.56
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.56
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.56
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.56
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.55
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.55
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.55
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.55
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.55
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.54
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.54
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.54
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.54
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.53
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.53
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.53
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.53
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.52
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.52
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.52
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.51
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.51
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.51
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.51
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.5
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.5
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.5
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.5
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.5
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.5
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.49
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.49
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.49
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.49
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.49
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.49
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.49
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.49
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.49
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.49
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.49
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.49
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.49
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.48
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.48
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.48
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.48
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.48
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.48
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.48
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.47
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.47
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.47
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.46
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.46
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.46
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.46
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.46
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.46
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.45
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.44
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.44
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.44
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.44
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.43
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.43
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.43
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.43
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.43
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.43
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.43
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.43
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.42
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.42
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.42
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.41
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.41
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.41
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.41
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.4
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.4
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.4
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.4
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.39
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.39
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.39
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.39
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.39
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.38
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.38
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.38
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.37
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.37
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.37
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.37
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.37
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.37
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.36
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.36
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.36
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.35
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.35
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.35
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.35
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.34
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.34
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.34
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.34
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.33
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.33
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.32
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.32
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.31
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.31
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.31
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.3
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.3
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.3
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.29
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.29
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.29
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.29
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.29
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.28
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.28
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.27
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.27
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.26
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.26
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.25
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.25
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.25
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.24
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.24
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.24
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.24
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.24
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.23
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.23
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.23
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.22
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.21
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.2
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.19
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.19
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.19
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.18
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.18
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.18
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.17
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.17
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.17
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.15
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.15
2o07_A	304	Spermidine synthase; structural genomics, structur	99.15
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.14
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.14
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.13
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.13
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.13
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.12
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.11
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.1
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	99.1
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.09
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.08
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.07
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.06
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.06
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.05
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.05
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.04
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	99.04
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.04
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	98.99
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.98
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	98.98
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.98
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	98.97
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.96
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.96
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	98.95
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.95
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	98.94
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	98.94
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.93
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	98.92
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.87
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.86
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.86
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.81
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.8
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	98.79
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.77
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.75
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	98.73
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.69
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.65
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.63
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.61
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.58
3lkd_A	542	Type I restriction-modification system methyltrans	98.58
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.56
3khk_A	544	Type I restriction-modification system methylation	98.51
2jny_A	67	Uncharacterized BCR; structure, CGR1, NESG, struct	98.35
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.35
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.33
2jr6_A	68	UPF0434 protein NMA0874; solution, structural geno	98.33
2hf1_A	68	Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A	98.32
2js4_A	70	UPF0434 protein BB2007; NESG, northeast structural	98.31
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.31
2pk7_A	69	Uncharacterized protein; NESG, PLR1, putative tetr	98.3
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.24
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.24
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.23
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.21
2kpi_A	56	Uncharacterized protein SCO3027; zinc finger, PSI-	98.17
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	98.13
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.1
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.09
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.01
2zig_A	297	TTHA0409, putative modification methylase; methylt	98.01
3ufb_A	530	Type I restriction-modification system methyltran	98.0
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	97.96
2k5r_A	97	Uncharacterized protein XF2673; solution structure	97.96
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.82
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	97.8
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	97.71
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.68
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	97.68
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	97.65
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.47
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.39
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.36
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	97.33
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.3
1pft_A	50	TFIIB, PFTFIIBN; N-terminal domain, transcription	96.92
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	96.74
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	96.52
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	96.45
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	96.09
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	95.94
2k5c_A	95	Uncharacterized protein PF0385; structural genomic	95.66
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	95.5
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	95.4
3q87_A	125	Putative uncharacterized protein ECU08_1170; SAM-m	95.36
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	95.2
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	95.07
2oo3_A	283	Protein involved in catabolism of external DNA; st	95.0
3j20_Y	50	30S ribosomal protein S27AE; archaea, archaeal, KI	94.6
1vq8_Z	83	50S ribosomal protein L37AE; ribosome 50S, protein	94.57
1qyp_A	57	RNA polymerase II; transcription, RPB9, Zn ribbon,	94.46
2akl_A	138	PHNA-like protein PA0128; two domains, Zn binding	94.12
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	94.08
1dl6_A	58	Transcription factor II B (TFIIB); zinc ribbon, ge	93.85
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	93.83
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	93.54
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	93.31
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	93.26
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	92.92
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	92.69
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	92.64
2j6a_A	141	Protein TRM112; translation termination, methyltra	92.55
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	92.22
1tfi_A	50	Transcriptional elongation factor SII; transcripti	92.03
3jyw_9	72	60S ribosomal protein L43; eukaryotic ribosome, RA	91.74
3cc2_Z	116	50S ribosomal protein L37AE, 50S ribosomal protein	91.64
3j21_i	83	50S ribosomal protein L37AE; archaea, archaeal, KI	91.62
2k4x_A	55	30S ribosomal protein S27AE; metal-binding, ribonu	91.37
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	91.23
3iz5_m	92	60S ribosomal protein L43 (L37AE); eukaryotic ribo	90.95
2jne_A	101	Hypothetical protein YFGJ; zinc fingers, two zinc,	90.78
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	90.78
3h0g_I	113	DNA-directed RNA polymerases I, II, and III subuni	90.77
1ffk_W	73	Ribosomal protein L37AE; ribosome assembly, RNA-RN	90.57
4a17_Y	103	RPL37A, 60S ribosomal protein L32; eukaryotic ribo	90.42
3izc_m	92	60S ribosomal protein RPL43 (L37AE); eukaryotic ri	90.22
1gh9_A	71	8.3 kDa protein (gene MTH1184); beta+alpha complex	90.16
3h0g_L	63	DNA-directed RNA polymerases I, II, and III subuni	89.96
3po3_S	178	Transcription elongation factor S-II; RNA polymera	89.69
1twf_L	70	ABC10-alpha, DNA-directed RNA polymerases I, II, a	89.56
3me5_A	482	Cytosine-specific methyltransferase; structural ge	88.66
2jrp_A	81	Putative cytoplasmic protein; two-zinc binding pro	88.42
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	87.99
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	87.56
3h0g_I	113	DNA-directed RNA polymerases I, II, and III subuni	87.49
1wii_A	85	Hypothetical UPF0222 protein MGC4549; domain of un	87.37
3qt1_I	133	DNA-directed RNA polymerases I, II, and III subun;	86.9
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	86.75
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	86.15
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	86.05
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	86.03
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	86.02
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	86.01
1twf_I	122	B12.6, DNA-directed RNA polymerase II 14.2 kDa pol	85.9
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	85.77
1pqv_S	309	STP-alpha, transcription elongation factor S-II, D	85.28
3ga8_A	78	HTH-type transcriptional regulator MQSA (YGIT/B30;	85.1
3c85_A	183	Putative glutathione-regulated potassium-efflux S	84.73
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	84.62
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	84.51
3j21_g	51	50S ribosomal protein L40E; archaea, archaeal, KIN	83.9
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	83.3
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	83.03
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	82.94
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	82.51
3flo_B	206	DNA polymerase alpha catalytic subunit A; protein-	82.49
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	81.89
3qt1_I	133	DNA-directed RNA polymerases I, II, and III subun;	81.86
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	81.41
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	80.27
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	80.18

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.82  E-value=1.3e-20  Score=178.99  Aligned_cols=112  Identities=10%  Similarity=0.109  Sum_probs=87.2

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (319)
                      +.+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+|+.+++.|+++-..     .....+...+...+++.+
T Consensus        97 ~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~--~v~gvD~s~~~~~~a~~~~~~-----~~~~~~~~~~~~~l~~~~  169 (416)
T 4e2x_A           97 RDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGV--RHLGFEPSSGVAAKAREKGIR-----VRTDFFEKATADDVRRTE  169 (416)
T ss_dssp             HHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTC--EEEEECCCHHHHHHHHTTTCC-----EECSCCSHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCC--cEEEECCCHHHHHHHHHcCCC-----cceeeechhhHhhcccCC
Confidence            4555556666789999999999999999999876  999999999999999875110     001112233444566667


Q ss_pred             CCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEE
Q 020988          236 GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQ  274 (319)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~  274 (319)
                      ++||+|++.++++|++|+..++++++++|||+|.+.+..
T Consensus       170 ~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  208 (416)
T 4e2x_A          170 GPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFED  208 (416)
T ss_dssp             CCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEe
Confidence            899999999999999999999999999999876555433

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.81  E-value=7.8e-19  Score=156.74  Aligned_cols=175  Identities=21%  Similarity=0.341  Sum_probs=120.9

Q ss_pred             eeccCCCccccccCCCCCcccceecCceeeCccCCccccCCceeeeccccCccC--cCCCchhhhhhhcCchhhHHhHHh
Q 020988           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKD--YTEVKPASTELFRSPFVSFLYERG  138 (319)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~~~g~~~~~~~~~~~~--y~~~~~~~~~~~~~~~~s~~~~~~  138 (319)
                      |.||.|++++....           ..+.|++|......++||++++..+....  ..+.    .+++..          
T Consensus         3 ~~Cp~C~~~~~~~~-----------~~~~C~~~~~~~~~~~Gy~~~~~~~~~~~~~~~~~----~~~~~~----------   57 (269)
T 1p91_A            3 FSCPLCHQPLSREK-----------NSYICPQRHQFDMAKEGYVNLLPVQHKRSRDPGDS----AEMMQA----------   57 (269)
T ss_dssp             BBCTTTCCBCEEET-----------TEEECTTCCEEEBCTTSCEECSCSSSSCSCCCSSS----HHHHHH----------
T ss_pred             ccCCCCCccceeCC-----------CEEECCCCCcCCcCCCEEEEeecccccCCCCCCCC----HHHHHH----------
Confidence            78999999876543           57899997655577899999886533211  1110    111110          


Q ss_pred             HHHhhhhCCCCCcHH--HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCcc
Q 020988          139 WRQNFNRSGFPGPDE--EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI  216 (319)
Q Consensus       139 w~~~~~~~~~~~~~~--~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~  216 (319)
                       +..+...+++.+..  ..+.+...+ ..++.+|||||||+|.++..+++..+..+|+|+|+|+.+++.|+++.      
T Consensus        58 -~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~------  129 (269)
T 1p91_A           58 -RRAFLDAGHYQPLRDAIVAQLRERL-DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------  129 (269)
T ss_dssp             -HHHHHTTTTTHHHHHHHHHHHHHHS-CTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------
T ss_pred             -HHHHHhCCCcHHHHHHHHHHHHHhc-CCCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC------
Confidence             11122222222211  122222222 24678999999999999999999854569999999999999998864      


Q ss_pred             CCCCeEEEEcCCCCCCCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEeec
Q 020988          217 LTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFRY  277 (319)
Q Consensus       217 ~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~~  277 (319)
                        .++.++.+|+.++|+.+++||+|++.++..       .++++.++|||+|...+.....
T Consensus       130 --~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~-------~l~~~~~~L~pgG~l~~~~~~~  181 (269)
T 1p91_A          130 --PQVTFCVASSHRLPFSDTSMDAIIRIYAPC-------KAEELARVVKPGGWVITATPGP  181 (269)
T ss_dssp             --TTSEEEECCTTSCSBCTTCEEEEEEESCCC-------CHHHHHHHEEEEEEEEEEEECT
T ss_pred             --CCcEEEEcchhhCCCCCCceeEEEEeCChh-------hHHHHHHhcCCCcEEEEEEcCH
Confidence              468899999999998889999999876632       3788999999988777666543

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.78  E-value=9.4e-19  Score=155.83  Aligned_cols=112  Identities=21%  Similarity=0.195  Sum_probs=96.7

Q ss_pred             cHHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC
Q 020988          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (319)
Q Consensus       151 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (319)
                      |.+.++.+.+...  .+++|||||||+|.++..+++.+.  +|+|+|+|+.|++.|++         .+++.++++|+++
T Consensus        26 p~~l~~~l~~~~~--~~~~vLDvGcGtG~~~~~l~~~~~--~v~gvD~s~~ml~~a~~---------~~~v~~~~~~~e~   92 (257)
T 4hg2_A           26 PRALFRWLGEVAP--ARGDALDCGCGSGQASLGLAEFFE--RVHAVDPGEAQIRQALR---------HPRVTYAVAPAED   92 (257)
T ss_dssp             CHHHHHHHHHHSS--CSSEEEEESCTTTTTHHHHHTTCS--EEEEEESCHHHHHTCCC---------CTTEEEEECCTTC
T ss_pred             HHHHHHHHHHhcC--CCCCEEEEcCCCCHHHHHHHHhCC--EEEEEeCcHHhhhhhhh---------cCCceeehhhhhh
Confidence            4555566665543  457999999999999999999876  99999999999988764         3589999999999


Q ss_pred             CCCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988          231 LPFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFR  276 (319)
Q Consensus       231 lp~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~  276 (319)
                      +|+++++||+|++..++||+ ++..+++++.|+|||||.+.++.+.
T Consensus        93 ~~~~~~sfD~v~~~~~~h~~-~~~~~~~e~~rvLkpgG~l~~~~~~  137 (257)
T 4hg2_A           93 TGLPPASVDVAIAAQAMHWF-DLDRFWAELRRVARPGAVFAAVTYG  137 (257)
T ss_dssp             CCCCSSCEEEEEECSCCTTC-CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             hcccCCcccEEEEeeehhHh-hHHHHHHHHHHHcCCCCEEEEEECC
Confidence            99999999999999999887 7889999999999999988877663

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.77  E-value=2.4e-18  Score=152.80  Aligned_cols=116  Identities=22%  Similarity=0.298  Sum_probs=101.6

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (319)
                      .+.+.+.+...++.+|||||||+|.++..+++.++  +|+|+|+|+.+++.|++++...+   ..++.++++|+..+|++
T Consensus        26 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~---~~~v~~~~~d~~~l~~~  100 (260)
T 1vl5_A           26 LAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNG---HQQVEYVQGDAEQMPFT  100 (260)
T ss_dssp             HHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTT---CCSEEEEECCC-CCCSC
T ss_pred             HHHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcC---CCceEEEEecHHhCCCC
Confidence            34566667677889999999999999999999876  99999999999999999887642   35799999999999998


Q ss_pred             CCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          235 SGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      +++||+|++..+++|++|+..+++++.++|||+|.+.+...
T Consensus       101 ~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~  141 (260)
T 1vl5_A          101 DERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDN  141 (260)
T ss_dssp             TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence            89999999999999999999999999999999887766544

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.74  E-value=2.9e-17  Score=146.52  Aligned_cols=106  Identities=13%  Similarity=0.186  Sum_probs=89.9

Q ss_pred             ccCCCeEEEEcCCcChHHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEE
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFAKSG--TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV  241 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~~~g--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V  241 (319)
                      ..++.+|||||||+|.++..+++..  ++.+|+|+|+|+.|++.|++++...+  ...+++++++|+.++|+.  .||+|
T Consensus        68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~--~~~~v~~~~~D~~~~~~~--~~d~v  143 (261)
T 4gek_A           68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK--APTPVDVIEGDIRDIAIE--NASMV  143 (261)
T ss_dssp             CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSC--CSSCEEEEESCTTTCCCC--SEEEE
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhc--cCceEEEeeccccccccc--ccccc
Confidence            4678999999999999999998874  35689999999999999999987643  345899999999999874  69999


Q ss_pred             EecccccCCCCHH--HHHHHHHHhhcCCCeeEEE
Q 020988          242 HAGAALHCWPSPS--NAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       242 ~~~~vl~h~~d~~--~~l~el~rvlk~g~~~g~~  273 (319)
                      ++..+++|+++++  .++++++++|||||.+.+.
T Consensus       144 ~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~  177 (261)
T 4gek_A          144 VLNFTLQFLEPSERQALLDKIYQGLNPGGALVLS  177 (261)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEE
Confidence            9999999997654  5799999999988765544

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.74  E-value=4e-17  Score=143.36  Aligned_cols=115  Identities=14%  Similarity=0.216  Sum_probs=102.0

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (319)
                      ..+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+|+.+++.+++++...+   ..++.++++|+..+|+++
T Consensus        11 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~~~~   85 (239)
T 1xxl_A           11 GLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKG---VENVRFQQGTAESLPFPD   85 (239)
T ss_dssp             HHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHT---CCSEEEEECBTTBCCSCT
T ss_pred             chHHHHhCcCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcC---CCCeEEEecccccCCCCC
Confidence            4555667778899999999999999999999876  99999999999999999887652   357999999999999988


Q ss_pred             CCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          236 GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      ++||+|++..+++|++++..+++++.++|||+|...+...
T Consensus        86 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  125 (239)
T 1xxl_A           86 DSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDH  125 (239)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEc
Confidence            9999999999999999999999999999999887766544

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.74  E-value=9.1e-18  Score=144.11  Aligned_cols=112  Identities=14%  Similarity=0.178  Sum_probs=91.2

Q ss_pred             hhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcC---------ccCCCCeEEEEcCCCCCC
Q 020988          162 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN---------TILTSNLALVRADVCRLP  232 (319)
Q Consensus       162 l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~---------~~~~~~i~~~~~d~~~lp  232 (319)
                      +...++.+|||+|||+|..+..+++.+.  +|+|+|+|+.|++.|+++.....         .....+++++++|+.+++
T Consensus        18 l~~~~~~~vLD~GCG~G~~~~~la~~g~--~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~   95 (203)
T 1pjz_A           18 LNVVPGARVLVPLCGKSQDMSWLSGQGY--HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALT   95 (203)
T ss_dssp             HCCCTTCEEEETTTCCSHHHHHHHHHCC--EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSST
T ss_pred             cccCCCCEEEEeCCCCcHhHHHHHHCCC--eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCC
Confidence            4445789999999999999999999987  99999999999999998864200         001358999999999998


Q ss_pred             CCC-CCccEEEecccccCCCCH--HHHHHHHHHhhcCCCeeEEEEe
Q 020988          233 FAS-GFVDAVHAGAALHCWPSP--SNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       233 ~~~-~~fD~V~~~~vl~h~~d~--~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      +.+ ++||+|++..+++|++..  ..+++++.|+|||||...++.+
T Consensus        96 ~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~  141 (203)
T 1pjz_A           96 ARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITL  141 (203)
T ss_dssp             HHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEE
T ss_pred             cccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence            765 799999999999999754  3578999999999887544443

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.74  E-value=6.6e-17  Score=146.24  Aligned_cols=117  Identities=11%  Similarity=0.112  Sum_probs=100.9

Q ss_pred             HHHHHHHh----hccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCC
Q 020988          155 FKMAQEYF----KSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC  229 (319)
Q Consensus       155 ~~~l~~~l----~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~  229 (319)
                      .+.+...+    ...++.+|||||||+|.++..+++. +.  +|+|+|+|+.+++.|+++....+  ...++.++.+|+.
T Consensus        67 ~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~--~v~gvD~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~  142 (297)
T 2o57_A           67 DEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGV--SIDCLNIAPVQNKRNEEYNNQAG--LADNITVKYGSFL  142 (297)
T ss_dssp             HHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCC--EEEEEESCHHHHHHHHHHHHHHT--CTTTEEEEECCTT
T ss_pred             HHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEEcCcc
Confidence            44555566    5567899999999999999999987 44  99999999999999999886643  2357999999999


Q ss_pred             CCCCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          230 RLPFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       230 ~lp~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      ++|+++++||+|++.++++|++++..+++++.++|||+|.+.+..+
T Consensus       143 ~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  188 (297)
T 2o57_A          143 EIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDP  188 (297)
T ss_dssp             SCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cCCCCCCCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence            9999889999999999999999999999999999999877665544

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.73  E-value=3.3e-17  Score=144.76  Aligned_cols=120  Identities=13%  Similarity=0.121  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC
Q 020988          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (319)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (319)
                      ....+.+...+...++.+|||||||+|.++..+++.. ..+|+|+|+|+.+++.|+++....+  ...++.++++|+.++
T Consensus        22 ~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~v~~~~~d~~~~   98 (256)
T 1nkv_A           22 EEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELG--VSERVHFIHNDAAGY   98 (256)
T ss_dssp             HHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEESCCTTC
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEECChHhC
Confidence            3345666677777788999999999999999999874 3499999999999999999887642  235799999999999


Q ss_pred             CCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          232 PFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      ++ +++||+|++..+++|++++..+++++.++|||||...+...
T Consensus        99 ~~-~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~  141 (256)
T 1nkv_A           99 VA-NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEP  141 (256)
T ss_dssp             CC-SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred             Cc-CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecC
Confidence            87 78999999999999999999999999999998876665543

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.73  E-value=6.3e-17  Score=139.72  Aligned_cols=114  Identities=12%  Similarity=0.088  Sum_probs=96.1

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCcc--CCCCeEEEEcCCCCCC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI--LTSNLALVRADVCRLP  232 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~--~~~~i~~~~~d~~~lp  232 (319)
                      .+.+.+.+...++.+|||||||+|.++..+++.++..+++|+|+|+.+++.|++++...+..  ...++.++++|+...+
T Consensus        18 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~   97 (217)
T 3jwh_A           18 MNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQD   97 (217)
T ss_dssp             HHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCC
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCccccc
Confidence            35566666667889999999999999999999877679999999999999999997653200  0127999999998888


Q ss_pred             CCCCCccEEEecccccCCCCH--HHHHHHHHHhhcCCC
Q 020988          233 FASGFVDAVHAGAALHCWPSP--SNAASVFSSSYSLLS  268 (319)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~--~~~l~el~rvlk~g~  268 (319)
                      ..+++||+|++..+++|++++  ..+++++.++|||+|
T Consensus        98 ~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG  135 (217)
T 3jwh_A           98 KRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKI  135 (217)
T ss_dssp             GGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSE
T ss_pred             ccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCE
Confidence            777899999999999999876  788999999999986

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.72  E-value=7.3e-17  Score=139.44  Aligned_cols=113  Identities=15%  Similarity=0.164  Sum_probs=95.6

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCcc--CCCCeEEEEcCCCCCCC
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI--LTSNLALVRADVCRLPF  233 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~--~~~~i~~~~~d~~~lp~  233 (319)
                      +.+.+.+...++.+|||||||+|.++..+++.++..+++|+|+|+.+++.|++++...+..  ...+++++++|+..+++
T Consensus        19 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~   98 (219)
T 3jwg_A           19 GTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDK   98 (219)
T ss_dssp             HHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCG
T ss_pred             HHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccccc
Confidence            4555666667789999999999999999999887679999999999999999987653200  01279999999988888


Q ss_pred             CCCCccEEEecccccCCCCH--HHHHHHHHHhhcCCC
Q 020988          234 ASGFVDAVHAGAALHCWPSP--SNAASVFSSSYSLLS  268 (319)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~--~~~l~el~rvlk~g~  268 (319)
                      .+++||+|++..+++|++++  ..+++++.++|||+|
T Consensus        99 ~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG  135 (219)
T 3jwg_A           99 RFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQT  135 (219)
T ss_dssp             GGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSE
T ss_pred             ccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCE
Confidence            78899999999999999876  688999999999976

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.72  E-value=5.4e-17  Score=139.44  Aligned_cols=115  Identities=22%  Similarity=0.334  Sum_probs=97.8

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (319)
                      .+.+.+.+...++ +|||||||+|.++..+++. +..+++|+|+|+.+++.|++++...+  ...++.++++|+.+++++
T Consensus        33 ~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~  108 (219)
T 3dlc_A           33 AENIINRFGITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADAN--LNDRIQIVQGDVHNIPIE  108 (219)
T ss_dssp             HHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECBTTBCSSC
T ss_pred             HHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhcc--ccCceEEEEcCHHHCCCC
Confidence            3455555554444 9999999999999999998 45599999999999999999987653  235899999999999998


Q ss_pred             CCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988          235 SGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~  273 (319)
                      +++||+|++..+++|++++..+++++.++|+|+|...+.
T Consensus       109 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~  147 (219)
T 3dlc_A          109 DNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIG  147 (219)
T ss_dssp             TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEE
Confidence            899999999999999999999999999999987765543

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.72  E-value=7.3e-17  Score=144.04  Aligned_cols=117  Identities=21%  Similarity=0.276  Sum_probs=100.7

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (319)
                      +.+.+.+...++.+|||||||+|.++..+++.. ..+|+|+|+|+.+++.++++....+  ...++.++.+|+.++|+++
T Consensus        51 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~~  127 (273)
T 3bus_A           51 DEMIALLDVRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAG--LANRVTFSYADAMDLPFED  127 (273)
T ss_dssp             HHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECCTTSCCSCT
T ss_pred             HHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEECccccCCCCC
Confidence            445555666788999999999999999998864 3599999999999999999887642  2347999999999999988


Q ss_pred             CCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          236 GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      ++||+|++..+++|++++..+++++.++|||+|...+..+
T Consensus       128 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~  167 (273)
T 3bus_A          128 ASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADF  167 (273)
T ss_dssp             TCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             CCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence            9999999999999999999999999999998877666554

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.72  E-value=5.6e-17  Score=139.96  Aligned_cols=117  Identities=15%  Similarity=0.289  Sum_probs=101.8

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (319)
                      +.+.+.+...++.+|||||||+|.++..+++.+ +..+|+|+|+|+.+++.+++++...+   ..++.++.+|+.++++.
T Consensus        27 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~d~~~~~~~  103 (219)
T 3dh0_A           27 EKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLG---LKNVEVLKSEENKIPLP  103 (219)
T ss_dssp             HHHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHT---CTTEEEEECBTTBCSSC
T ss_pred             HHHHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcC---CCcEEEEecccccCCCC
Confidence            345555666788999999999999999999985 55699999999999999999987652   34799999999999988


Q ss_pred             CCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          235 SGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      +++||+|++..+++|++++..+++++.++|+|+|...+..+
T Consensus       104 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~  144 (219)
T 3dh0_A          104 DNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDW  144 (219)
T ss_dssp             SSCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEe
Confidence            89999999999999999999999999999999877666554

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.71  E-value=9.8e-17  Score=143.01  Aligned_cols=120  Identities=16%  Similarity=0.191  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHhh-ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC
Q 020988          152 DEEFKMAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (319)
Q Consensus       152 ~~~~~~l~~~l~-~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (319)
                      ......+...+. ..++.+|||||||+|.++..+++. +..+|+|+|+|+.+++.|++++...+  ...+++++++|+.+
T Consensus        31 ~~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~  107 (267)
T 3kkz_A           31 PEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSG--LQNRVTGIVGSMDD  107 (267)
T ss_dssp             HHHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECCTTS
T ss_pred             HHHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcC--CCcCcEEEEcChhh
Confidence            334444555554 567899999999999999999988 55699999999999999999987653  23579999999999


Q ss_pred             CCCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          231 LPFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       231 lp~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      +|+++++||+|++..+++|+ ++..+++++.++|||+|...+..+
T Consensus       108 ~~~~~~~fD~i~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~  151 (267)
T 3kkz_A          108 LPFRNEELDLIWSEGAIYNI-GFERGLNEWRKYLKKGGYLAVSEC  151 (267)
T ss_dssp             CCCCTTCEEEEEESSCGGGT-CHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred             CCCCCCCEEEEEEcCCceec-CHHHHHHHHHHHcCCCCEEEEEEe
Confidence            99888999999999999999 899999999999998876665544

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.71  E-value=9.3e-17  Score=142.54  Aligned_cols=109  Identities=19%  Similarity=0.186  Sum_probs=89.6

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhh---------cCc-----cCCCCeEEEEcCCCC
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ---------DNT-----ILTSNLALVRADVCR  230 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~---------~~~-----~~~~~i~~~~~d~~~  230 (319)
                      .++.+|||+|||+|..+..+++.|.  +|+|+|+|+.|++.|+++...         .+.     ....+++++++|+.+
T Consensus        67 ~~~~~vLD~GCG~G~~~~~La~~G~--~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~  144 (252)
T 2gb4_A           67 QSGLRVFFPLCGKAIEMKWFADRGH--TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD  144 (252)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHTTC--EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred             CCCCeEEEeCCCCcHHHHHHHHCCC--eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence            4788999999999999999999987  999999999999999877531         000     013589999999999


Q ss_pred             CCCCC-CCccEEEecccccCCCCH--HHHHHHHHHhhcCCCeeEEEEe
Q 020988          231 LPFAS-GFVDAVHAGAALHCWPSP--SNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       231 lp~~~-~~fD~V~~~~vl~h~~d~--~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      +++.+ ++||+|++..+++|++..  ..+++++.++|||||.+.++.+
T Consensus       145 l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~  192 (252)
T 2gb4_A          145 LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVL  192 (252)
T ss_dssp             GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEE
Confidence            98764 899999999999999753  4689999999999887754433

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.71  E-value=1.6e-16  Score=144.09  Aligned_cols=123  Identities=18%  Similarity=0.274  Sum_probs=102.4

Q ss_pred             cHHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCC
Q 020988          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC  229 (319)
Q Consensus       151 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~  229 (319)
                      +....+.+..+.. .++.+|||||||+|.++..+++.. +..+|+|+|+|+.+++.|++++... .....+++++++|+.
T Consensus        22 ~~~~~~~l~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~~v~~~~~d~~   99 (299)
T 3g5t_A           22 PSDFYKMIDEYHD-GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGS-PDTYKNVSFKISSSD   99 (299)
T ss_dssp             CHHHHHHHHHHCC-SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHC-C-CCTTEEEEECCTT
T ss_pred             CHHHHHHHHHHhc-CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhc-cCCCCceEEEEcCHH
Confidence            3444555555543 578999999999999999999753 5679999999999999999988663 012468999999999


Q ss_pred             CCCCCC------CCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988          230 RLPFAS------GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFR  276 (319)
Q Consensus       230 ~lp~~~------~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~  276 (319)
                      ++++.+      ++||+|++..+++|+ ++..+++++.++|+|||.+.++.+.
T Consensus       100 ~~~~~~~~~~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~i~~~~  151 (299)
T 3g5t_A          100 DFKFLGADSVDKQKIDMITAVECAHWF-DFEKFQRSAYANLRKDGTIAIWGYA  151 (299)
T ss_dssp             CCGGGCTTTTTSSCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             hCCccccccccCCCeeEEeHhhHHHHh-CHHHHHHHHHHhcCCCcEEEEEecC
Confidence            998877      899999999999999 9999999999999998887765553

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.71  E-value=1.3e-16  Score=140.98  Aligned_cols=121  Identities=12%  Similarity=0.172  Sum_probs=100.8

Q ss_pred             cHHHHHHHHHHh-hccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCC
Q 020988          151 PDEEFKMAQEYF-KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC  229 (319)
Q Consensus       151 ~~~~~~~l~~~l-~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~  229 (319)
                      .......+...+ ...++.+|||||||+|.++..+++.++ .+|+|+|+|+.+++.++++....+  ...+++++++|+.
T Consensus        30 ~~~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~  106 (257)
T 3f4k_A           30 SPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVK-GQITGIDLFPDFIEIFNENAVKAN--CADRVKGITGSMD  106 (257)
T ss_dssp             CHHHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCC-SEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECCTT
T ss_pred             CHHHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCC-CeEEEEECCHHHHHHHHHHHHHcC--CCCceEEEECChh
Confidence            333444444554 345778999999999999999999975 499999999999999999987753  2345999999999


Q ss_pred             CCCCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          230 RLPFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       230 ~lp~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      .+|+++++||+|++..+++|+ ++..+++++.++|||+|...+...
T Consensus       107 ~~~~~~~~fD~v~~~~~l~~~-~~~~~l~~~~~~L~pgG~l~~~~~  151 (257)
T 3f4k_A          107 NLPFQNEELDLIWSEGAIYNI-GFERGMNEWSKYLKKGGFIAVSEA  151 (257)
T ss_dssp             SCSSCTTCEEEEEEESCSCCC-CHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             hCCCCCCCEEEEEecChHhhc-CHHHHHHHHHHHcCCCcEEEEEEe
Confidence            999888999999999999999 899999999999998876665543

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.70  E-value=1e-16  Score=141.52  Aligned_cols=113  Identities=15%  Similarity=0.170  Sum_probs=98.2

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (319)
                      ..+...+...++.+|||||||+|.++..+++.++ .+|+|+|+|+.+++.++++..      ..++.++++|+.++++++
T Consensus        34 ~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~------~~~~~~~~~d~~~~~~~~  106 (253)
T 3g5l_A           34 HELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGA-KKVLGIDLSERMLTEAKRKTT------SPVVCYEQKAIEDIAIEP  106 (253)
T ss_dssp             HHHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHCC------CTTEEEEECCGGGCCCCT
T ss_pred             HHHHHhhhccCCCEEEEECCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHhhc------cCCeEEEEcchhhCCCCC
Confidence            3455556666789999999999999999999864 389999999999999999864      358999999999999888


Q ss_pred             CCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          236 GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      ++||+|++..+++|++++..+++++.++|||+|.+.+.+.
T Consensus       107 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  146 (253)
T 3g5l_A          107 DAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVE  146 (253)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCeEEEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEEeC
Confidence            9999999999999999999999999999998876655444

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.70  E-value=6.4e-17  Score=141.70  Aligned_cols=108  Identities=11%  Similarity=0.100  Sum_probs=92.8

Q ss_pred             HHHHhh-ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCC
Q 020988          158 AQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (319)
Q Consensus       158 l~~~l~-~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~  236 (319)
                      +.+.+. ..++.+|||||||+|.++..+++.++  +|+|+|+|+.+++.|+++..       .++.++++|+.++ +.++
T Consensus        33 ~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~-------~~v~~~~~d~~~~-~~~~  102 (250)
T 2p7i_A           33 MVRAFTPFFRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLK-------DGITYIHSRFEDA-QLPR  102 (250)
T ss_dssp             HHHHHGGGCCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSC-------SCEEEEESCGGGC-CCSS
T ss_pred             HHHHHHhhcCCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhh-------CCeEEEEccHHHc-CcCC
Confidence            333443 35678999999999999999999887  89999999999999998752       2799999999887 4578


Q ss_pred             CccEEEecccccCCCCHHHHHHHHH-HhhcCCCeeEEEEe
Q 020988          237 FVDAVHAGAALHCWPSPSNAASVFS-SSYSLLSICYLLQF  275 (319)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~~~l~el~-rvlk~g~~~g~~~~  275 (319)
                      +||+|++.++++|++++..+++++. ++|||+|...+..+
T Consensus       103 ~fD~v~~~~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~  142 (250)
T 2p7i_A          103 RYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCP  142 (250)
T ss_dssp             CEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             cccEEEEhhHHHhhcCHHHHHHHHHHHhcCCCCEEEEEcC
Confidence            9999999999999999999999999 99998877666555

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.70  E-value=8.5e-17  Score=143.16  Aligned_cols=110  Identities=19%  Similarity=0.211  Sum_probs=97.0

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (319)
                      .+.+.+.+...++.+|||||||+|.++..+++.+  .+|+|+|+|+.+++.++++         .++.++++|+.++|++
T Consensus        23 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~---------~~~~~~~~d~~~~~~~   91 (261)
T 3ege_A           23 VNAIINLLNLPKGSVIADIGAGTGGYSVALANQG--LFVYAVEPSIVMRQQAVVH---------PQVEWFTGYAENLALP   91 (261)
T ss_dssp             HHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTTT--CEEEEECSCHHHHHSSCCC---------TTEEEECCCTTSCCSC
T ss_pred             HHHHHHHhCCCCCCEEEEEcCcccHHHHHHHhCC--CEEEEEeCCHHHHHHHHhc---------cCCEEEECchhhCCCC
Confidence            3556666766788999999999999999999855  4999999999999877653         2899999999999998


Q ss_pred             CCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988          235 SGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFR  276 (319)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~  276 (319)
                      +++||+|++.++++|++++..+++++.++|| ||...++.+.
T Consensus        92 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~  132 (261)
T 3ege_A           92 DKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTFD  132 (261)
T ss_dssp             TTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEEC
T ss_pred             CCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEcC
Confidence            8999999999999999999999999999999 9887777664

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.70  E-value=1.2e-16  Score=137.60  Aligned_cols=111  Identities=12%  Similarity=0.161  Sum_probs=93.2

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (319)
                      ..+...+...++.+|||||||+|.++..+++.+.  +|+|+|+|+.+++.++++....     .+++++++|+.+++ .+
T Consensus        41 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~d~~~~~-~~  112 (216)
T 3ofk_A           41 QLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCK--RLTVIDVMPRAIGRACQRTKRW-----SHISWAATDILQFS-TA  112 (216)
T ss_dssp             HHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGEE--EEEEEESCHHHHHHHHHHTTTC-----SSEEEEECCTTTCC-CS
T ss_pred             HHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHhcccC-----CCeEEEEcchhhCC-CC
Confidence            4455556667788999999999999999999875  9999999999999999987652     48999999999988 57


Q ss_pred             CCccEEEecccccCCCCHH---HHHHHHHHhhcCCCeeEEEE
Q 020988          236 GFVDAVHAGAALHCWPSPS---NAASVFSSSYSLLSICYLLQ  274 (319)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~---~~l~el~rvlk~g~~~g~~~  274 (319)
                      ++||+|++..+++|++++.   .+++++.++|||+|.+.+..
T Consensus       113 ~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  154 (216)
T 3ofk_A          113 ELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGS  154 (216)
T ss_dssp             CCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            8999999999999999985   55788888877766554433

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.70  E-value=1.2e-16  Score=142.95  Aligned_cols=109  Identities=17%  Similarity=0.312  Sum_probs=97.9

Q ss_pred             hccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEE
Q 020988          163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH  242 (319)
Q Consensus       163 ~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~  242 (319)
                      ...++.+|||||||+|.++..+++.++..+++|+|+|+.+++.+++++...+   ..++.++.+|+.++++++++||+|+
T Consensus        34 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~d~~~~~~~~~~fD~v~  110 (276)
T 3mgg_A           34 VYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNG---IKNVKFLQANIFSLPFEDSSFDHIF  110 (276)
T ss_dssp             CCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTT---CCSEEEEECCGGGCCSCTTCEEEEE
T ss_pred             cCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEcccccCCCCCCCeeEEE
Confidence            3467899999999999999999999777899999999999999999987652   4589999999999998889999999


Q ss_pred             ecccccCCCCHHHHHHHHHHhhcCCCeeEEEE
Q 020988          243 AGAALHCWPSPSNAASVFSSSYSLLSICYLLQ  274 (319)
Q Consensus       243 ~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~  274 (319)
                      +..+++|++++..+++++.++|||+|...+..
T Consensus       111 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~  142 (276)
T 3mgg_A          111 VCFVLEHLQSPEEALKSLKKVLKPGGTITVIE  142 (276)
T ss_dssp             EESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EechhhhcCCHHHHHHHHHHHcCCCcEEEEEE
Confidence            99999999999999999999999987766554

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.70  E-value=1.2e-16  Score=141.64  Aligned_cols=116  Identities=9%  Similarity=0.081  Sum_probs=99.7

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (319)
Q Consensus       154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (319)
                      ..+.+.+.+...++.+|||||||+|.++..+++.. ..+|+|+|+|+.+++.++++....     .+++++.+|+.++|+
T Consensus        43 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~d~~~~~~  116 (266)
T 3ujc_A           43 ATKKILSDIELNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGN-----NKIIFEANDILTKEF  116 (266)
T ss_dssp             HHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSC-----TTEEEEECCTTTCCC
T ss_pred             HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcC-----CCeEEEECccccCCC
Confidence            34555555666788899999999999999999973 349999999999999999976441     689999999999999


Q ss_pred             CCCCccEEEecccccCC--CCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          234 ASGFVDAVHAGAALHCW--PSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       234 ~~~~fD~V~~~~vl~h~--~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      ++++||+|++..+++|+  +++..+++++.++|||+|...+..+
T Consensus       117 ~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  160 (266)
T 3ujc_A          117 PENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDY  160 (266)
T ss_dssp             CTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence            88999999999999999  7888999999999999877666655

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.70  E-value=1.8e-16  Score=138.22  Aligned_cols=115  Identities=16%  Similarity=0.191  Sum_probs=97.6

Q ss_pred             HHHHHHHhh-ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988          155 FKMAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (319)
Q Consensus       155 ~~~l~~~l~-~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (319)
                      .+.+...+. ..++.+|||||||+|.++..+++..+..+++|+|+|+.+++.|++++...     .++.++++|+.++++
T Consensus        32 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~d~~~~~~  106 (234)
T 3dtn_A           32 YGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGN-----LKVKYIEADYSKYDF  106 (234)
T ss_dssp             HHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSC-----TTEEEEESCTTTCCC
T ss_pred             HHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccC-----CCEEEEeCchhccCC
Confidence            344555554 45778999999999999999999976779999999999999999987653     389999999999988


Q ss_pred             CCCCccEEEecccccCCCCHH--HHHHHHHHhhcCCCeeEEEEe
Q 020988          234 ASGFVDAVHAGAALHCWPSPS--NAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~--~~l~el~rvlk~g~~~g~~~~  275 (319)
                      . ++||+|++..+++|++++.  .+++++.++|||+|.+.+..+
T Consensus       107 ~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  149 (234)
T 3dtn_A          107 E-EKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADL  149 (234)
T ss_dssp             C-SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             C-CCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            7 8999999999999998776  489999999999877665544

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.69  E-value=1.1e-16  Score=143.97  Aligned_cols=106  Identities=18%  Similarity=0.226  Sum_probs=93.7

Q ss_pred             CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-CCCCCccEEEec
Q 020988          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDAVHAG  244 (319)
Q Consensus       166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~V~~~  244 (319)
                      ++.+|||||||+|.++..+++.+.  +|+|+|+|+.+++.|++++...+  ...++.++++|+.+++ +.+++||+|++.
T Consensus        68 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~~fD~v~~~  143 (285)
T 4htf_A           68 QKLRVLDAGGGEGQTAIKMAERGH--QVILCDLSAQMIDRAKQAAEAKG--VSDNMQFIHCAAQDVASHLETPVDLILFH  143 (285)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHC-C--CGGGEEEEESCGGGTGGGCSSCEEEEEEE
T ss_pred             CCCEEEEeCCcchHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CCcceEEEEcCHHHhhhhcCCCceEEEEC
Confidence            467999999999999999999865  99999999999999999987642  2258999999999987 778999999999


Q ss_pred             ccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          245 AALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       245 ~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      .+++|++++..+++++.++|||+|.+.+..+
T Consensus       144 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  174 (285)
T 4htf_A          144 AVLEWVADPRSVLQTLWSVLRPGGVLSLMFY  174 (285)
T ss_dssp             SCGGGCSCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             chhhcccCHHHHHHHHHHHcCCCeEEEEEEe
Confidence            9999999999999999999999887766655

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.69  E-value=2.5e-16  Score=139.39  Aligned_cols=105  Identities=16%  Similarity=0.158  Sum_probs=93.9

Q ss_pred             hccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEE
Q 020988          163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH  242 (319)
Q Consensus       163 ~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~  242 (319)
                      ...++.+|||||||+|.++..+++.+.  +|+|+|+|+.+++.+++++..    ...++.++.+|+.++++++++||+|+
T Consensus        36 ~~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~~~d~~~~~~~~~~fD~v~  109 (263)
T 2yqz_A           36 PKGEEPVFLELGVGTGRIALPLIARGY--RYIALDADAAMLEVFRQKIAG----VDRKVQVVQADARAIPLPDESVHGVI  109 (263)
T ss_dssp             CSSSCCEEEEETCTTSTTHHHHHTTTC--EEEEEESCHHHHHHHHHHTTT----SCTTEEEEESCTTSCCSCTTCEEEEE
T ss_pred             CCCCCCEEEEeCCcCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhc----cCCceEEEEcccccCCCCCCCeeEEE
Confidence            345788999999999999999998865  999999999999999998722    35689999999999998889999999


Q ss_pred             ecccccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988          243 AGAALHCWPSPSNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       243 ~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~  273 (319)
                      +..+++|++++..+++++.++|||+|...+.
T Consensus       110 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A          110 VVHLWHLVPDWPKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             EESCGGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ECCchhhcCCHHHHHHHHHHHCCCCcEEEEE
Confidence            9999999999999999999999998877655

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.69  E-value=2e-16  Score=136.60  Aligned_cols=109  Identities=14%  Similarity=0.161  Sum_probs=95.6

Q ss_pred             HHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCC
Q 020988          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (319)
Q Consensus       157 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~  236 (319)
                      .+.+.+...++.+|||||||+|.++..+++.+.  +++|+|+|+.+++.+++++.       .++.++.+|+.++++. +
T Consensus        36 ~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~-------~~~~~~~~d~~~~~~~-~  105 (220)
T 3hnr_A           36 DILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGR--TVYGIEPSREMRMIAKEKLP-------KEFSITEGDFLSFEVP-T  105 (220)
T ss_dssp             HHHHHHHHTCCSEEEEECCTTSHHHHHHHHTTC--EEEEECSCHHHHHHHHHHSC-------TTCCEESCCSSSCCCC-S
T ss_pred             HHHHHhhccCCCeEEEeCCCCCHHHHHHHhCCC--eEEEEeCCHHHHHHHHHhCC-------CceEEEeCChhhcCCC-C
Confidence            444455556789999999999999999999865  99999999999999999853       3789999999999887 8


Q ss_pred             CccEEEecccccCCCCHHH--HHHHHHHhhcCCCeeEEEEe
Q 020988          237 FVDAVHAGAALHCWPSPSN--AASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~~--~l~el~rvlk~g~~~g~~~~  275 (319)
                      +||+|++..+++|++++..  +++++.++|||+|...+..+
T Consensus       106 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  146 (220)
T 3hnr_A          106 SIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADT  146 (220)
T ss_dssp             CCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             CeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEec
Confidence            9999999999999999877  99999999999988776654

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.69  E-value=3e-16  Score=137.33  Aligned_cols=110  Identities=21%  Similarity=0.350  Sum_probs=95.8

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (319)
                      +.+...+  .++.+|||||||+|.++..+++.+.  +|+|+|+|+.+++.++++..      ..++.++++|+.++++++
T Consensus        45 ~~l~~~~--~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~------~~~~~~~~~d~~~~~~~~  114 (242)
T 3l8d_A           45 PFFEQYV--KKEAEVLDVGCGDGYGTYKLSRTGY--KAVGVDISEVMIQKGKERGE------GPDLSFIKGDLSSLPFEN  114 (242)
T ss_dssp             HHHHHHS--CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHTTTC------BTTEEEEECBTTBCSSCT
T ss_pred             HHHHHHc--CCCCeEEEEcCCCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhcc------cCCceEEEcchhcCCCCC
Confidence            3444443  3678999999999999999999866  99999999999999998752      368999999999999888


Q ss_pred             CCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          236 GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      ++||+|++.++++|++++..+++++.++|+|+|...+..+
T Consensus       115 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~  154 (242)
T 3l8d_A          115 EQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAIL  154 (242)
T ss_dssp             TCEEEEEEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCccEEEEcChHhhccCHHHHHHHHHHHhCCCeEEEEEEc
Confidence            9999999999999999999999999999999877666554

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.69  E-value=1.5e-16  Score=135.69  Aligned_cols=108  Identities=12%  Similarity=0.139  Sum_probs=93.5

Q ss_pred             HHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCC
Q 020988          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (319)
Q Consensus       157 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~  236 (319)
                      .+..++.. .+.+|||||||+|.++..+++.+.  +++|+|+|+.+++.++++.        .++.++++|+.+++++++
T Consensus        33 ~l~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~--------~~~~~~~~d~~~~~~~~~  101 (203)
T 3h2b_A           33 LIEPWATG-VDGVILDVGSGTGRWTGHLASLGH--QIEGLEPATRLVELARQTH--------PSVTFHHGTITDLSDSPK  101 (203)
T ss_dssp             HHHHHHHH-CCSCEEEETCTTCHHHHHHHHTTC--CEEEECCCHHHHHHHHHHC--------TTSEEECCCGGGGGGSCC
T ss_pred             HHHHHhcc-CCCeEEEecCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHhC--------CCCeEEeCcccccccCCC
Confidence            33444433 388999999999999999999866  9999999999999999873        478999999999998889


Q ss_pred             CccEEEecccccCCC--CHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          237 FVDAVHAGAALHCWP--SPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       237 ~fD~V~~~~vl~h~~--d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      +||+|++.++++|++  ++..+++++.++|||+|...+..+
T Consensus       102 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~  142 (203)
T 3h2b_A          102 RWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFF  142 (203)
T ss_dssp             CEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence            999999999999997  889999999999998877666555

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.69  E-value=6.6e-16  Score=130.89  Aligned_cols=112  Identities=19%  Similarity=0.162  Sum_probs=96.0

Q ss_pred             HHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCC
Q 020988          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (319)
Q Consensus       157 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~  236 (319)
                      .+.+.+...++.+|||||||+|.++..+++.+.  +++|+|+|+.+++.+++++...+   ..++.++.+|+.++++ ++
T Consensus        23 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~d~~~~~~-~~   96 (199)
T 2xvm_A           23 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGY--DVDAWDKNAMSIANVERIKSIEN---LDNLHTRVVDLNNLTF-DR   96 (199)
T ss_dssp             HHHHHTTTSCSCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHT---CTTEEEEECCGGGCCC-CC
T ss_pred             HHHHHhhccCCCeEEEEcCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHhCC---CCCcEEEEcchhhCCC-CC
Confidence            445556666788999999999999999999865  99999999999999999887652   3479999999999888 78


Q ss_pred             CccEEEecccccCCC--CHHHHHHHHHHhhcCCCeeEEEE
Q 020988          237 FVDAVHAGAALHCWP--SPSNAASVFSSSYSLLSICYLLQ  274 (319)
Q Consensus       237 ~fD~V~~~~vl~h~~--d~~~~l~el~rvlk~g~~~g~~~  274 (319)
                      +||+|++..+++|++  ++..+++++.++|+|+|...++.
T Consensus        97 ~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  136 (199)
T 2xvm_A           97 QYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVA  136 (199)
T ss_dssp             CEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence            999999999999998  77889999999999887655543

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.68  E-value=2.5e-16  Score=139.26  Aligned_cols=109  Identities=15%  Similarity=0.114  Sum_probs=94.7

Q ss_pred             HHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCC
Q 020988          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF  237 (319)
Q Consensus       158 l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~  237 (319)
                      +...+...++.+|||||||+|.++..+++..+..+++|+|+|+.+++.++++.        .++.++.+|+.+++ .+++
T Consensus        25 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~--------~~~~~~~~d~~~~~-~~~~   95 (259)
T 2p35_A           25 LLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL--------PNTNFGKADLATWK-PAQK   95 (259)
T ss_dssp             HHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS--------TTSEEEECCTTTCC-CSSC
T ss_pred             HHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC--------CCcEEEECChhhcC-ccCC
Confidence            34445556788999999999999999999855569999999999999999872        47899999999988 7789


Q ss_pred             ccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          238 VDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       238 fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      ||+|++..+++|++++..+++++.++|||+|.+.+...
T Consensus        96 fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~  133 (259)
T 2p35_A           96 ADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMP  133 (259)
T ss_dssp             EEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred             cCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeC
Confidence            99999999999999999999999999998877666554

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.68  E-value=4.8e-16  Score=141.88  Aligned_cols=115  Identities=14%  Similarity=0.103  Sum_probs=98.8

Q ss_pred             HHHHHHhh-ccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988          156 KMAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (319)
Q Consensus       156 ~~l~~~l~-~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (319)
                      +.+.+.+. ..++.+|||||||+|.++..+++. +.  +|+|+|+|+.+++.|++++...+  ...++.++.+|+.++|+
T Consensus       106 ~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~--~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~  181 (312)
T 3vc1_A          106 EFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGS--RVEGVTLSAAQADFGNRRARELR--IDDHVRSRVCNMLDTPF  181 (312)
T ss_dssp             HHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHCC--EEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECCTTSCCC
T ss_pred             HHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHHcC--CCCceEEEECChhcCCC
Confidence            34445555 567889999999999999999988 54  99999999999999999987753  23579999999999998


Q ss_pred             CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      ++++||+|++..+++|+ ++..+++++.++|||||.+.+...
T Consensus       182 ~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~~~~~  222 (312)
T 3vc1_A          182 DKGAVTASWNNESTMYV-DLHDLFSEHSRFLKVGGRYVTITG  222 (312)
T ss_dssp             CTTCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCEeEEEECCchhhC-CHHHHHHHHHHHcCCCcEEEEEEc
Confidence            88999999999999999 699999999999999887666554

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.68  E-value=3.9e-16  Score=140.63  Aligned_cols=109  Identities=15%  Similarity=0.131  Sum_probs=95.5

Q ss_pred             hccCCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEE
Q 020988          163 KSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV  241 (319)
Q Consensus       163 ~~~~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V  241 (319)
                      ...++.+|||||||+|.++..+++..+ ..+|+|+|+|+.+++.|++++...    ..++.++++|+.++++. ++||+|
T Consensus        19 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~----~~~v~~~~~d~~~~~~~-~~fD~v   93 (284)
T 3gu3_A           19 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL----PYDSEFLEGDATEIELN-DKYDIA   93 (284)
T ss_dssp             CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSS----SSEEEEEESCTTTCCCS-SCEEEE
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhc----CCceEEEEcchhhcCcC-CCeeEE
Confidence            456789999999999999999998865 369999999999999999998763    34899999999999884 699999


Q ss_pred             EecccccCCCCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988          242 HAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFR  276 (319)
Q Consensus       242 ~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~  276 (319)
                      ++..+++|++++..+++++.++|||||...+..+.
T Consensus        94 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A           94 ICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH  128 (284)
T ss_dssp             EEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             EECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence            99999999999999999999999998776655543

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.67  E-value=2.1e-16  Score=141.87  Aligned_cols=108  Identities=21%  Similarity=0.282  Sum_probs=94.1

Q ss_pred             HHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCC
Q 020988          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (319)
Q Consensus       157 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~  236 (319)
                      .+.+.+...++.+|||||||+|.++..+++.+  .+|+|+|+|+.+++.++++.        .++.++.+|+..+|+ ++
T Consensus        48 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~--------~~~~~~~~d~~~~~~-~~  116 (279)
T 3ccf_A           48 DLLQLLNPQPGEFILDLGCGTGQLTEKIAQSG--AEVLGTDNAATMIEKARQNY--------PHLHFDVADARNFRV-DK  116 (279)
T ss_dssp             HHHHHHCCCTTCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHC--------TTSCEEECCTTTCCC-SS
T ss_pred             HHHHHhCCCCCCEEEEecCCCCHHHHHHHhCC--CeEEEEECCHHHHHHHHhhC--------CCCEEEECChhhCCc-CC
Confidence            44456666778999999999999999999854  49999999999999999874        478899999999987 57


Q ss_pred             CccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          237 FVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      +||+|++..+++|++|+..+++++.++|||+|.+.+...
T Consensus       117 ~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~  155 (279)
T 3ccf_A          117 PLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFG  155 (279)
T ss_dssp             CEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CcCEEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEec
Confidence            999999999999999999999999999999877665544

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.67  E-value=9.1e-16  Score=139.27  Aligned_cols=115  Identities=17%  Similarity=0.134  Sum_probs=97.5

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (319)
                      +.+.+.+...++.+|||||||+|.++..+++..+ .+|+|+|+|+.+++.|++++...+  ...+++++.+|+.++   +
T Consensus        62 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~---~  135 (302)
T 3hem_A           62 KLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVD--SPRRKEVRIQGWEEF---D  135 (302)
T ss_dssp             HHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSC--CSSCEEEEECCGGGC---C
T ss_pred             HHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcC--CCCceEEEECCHHHc---C
Confidence            3445555567888999999999999999998832 499999999999999999987753  234799999999876   6


Q ss_pred             CCccEEEecccccCCCCH---------HHHHHHHHHhhcCCCeeEEEEee
Q 020988          236 GFVDAVHAGAALHCWPSP---------SNAASVFSSSYSLLSICYLLQFR  276 (319)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~---------~~~l~el~rvlk~g~~~g~~~~~  276 (319)
                      ++||+|++..+++|++|+         ..+++++.++|||+|.+.+..+.
T Consensus       136 ~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  185 (302)
T 3hem_A          136 EPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTIT  185 (302)
T ss_dssp             CCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEE
T ss_pred             CCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence            899999999999999887         68899999999999988777663

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.66  E-value=4.6e-16  Score=135.94  Aligned_cols=105  Identities=17%  Similarity=0.119  Sum_probs=89.9

Q ss_pred             CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecc
Q 020988          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (319)
Q Consensus       166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (319)
                      ++++|||||||+|.++..+++.+.  +|+|+|+|+.+++.|+++....+  ...++.++++|+.+++. +++||+|++..
T Consensus        66 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~-~~~fD~v~~~~  140 (235)
T 3lcc_A           66 PLGRALVPGCGGGHDVVAMASPER--FVVGLDISESALAKANETYGSSP--KAEYFSFVKEDVFTWRP-TELFDLIFDYV  140 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHCBTTE--EEEEECSCHHHHHHHHHHHTTSG--GGGGEEEECCCTTTCCC-SSCEEEEEEES
T ss_pred             CCCCEEEeCCCCCHHHHHHHhCCC--eEEEEECCHHHHHHHHHHhhccC--CCcceEEEECchhcCCC-CCCeeEEEECh
Confidence            456999999999999999988655  99999999999999999886521  13469999999999874 56999999999


Q ss_pred             cccCCC--CHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          246 ALHCWP--SPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       246 vl~h~~--d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      +++|++  ++..+++++.++|||+|.+.+..+
T Consensus       141 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  172 (235)
T 3lcc_A          141 FFCAIEPEMRPAWAKSMYELLKPDGELITLMY  172 (235)
T ss_dssp             STTTSCGGGHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             hhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEe
Confidence            999998  888999999999999887665555

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.66  E-value=5.8e-16  Score=135.44  Aligned_cols=113  Identities=23%  Similarity=0.252  Sum_probs=97.3

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (319)
                      ..+...+...++.+|||||||+|.++..+++.+. .+++|+|+|+.+++.++++...      .++.++++|+..+++++
T Consensus        33 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~------~~~~~~~~d~~~~~~~~  105 (243)
T 3bkw_A           33 PALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGPD------TGITYERADLDKLHLPQ  105 (243)
T ss_dssp             HHHHHHSCCCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSCS------SSEEEEECCGGGCCCCT
T ss_pred             HHHHHhccccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhccc------CCceEEEcChhhccCCC
Confidence            3556667667889999999999999999998753 4899999999999999987643      37999999999988888


Q ss_pred             CCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          236 GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      ++||+|++..+++|++++..+++++.++|+|+|.+.+...
T Consensus       106 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~  145 (243)
T 3bkw_A          106 DSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTE  145 (243)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEeC
Confidence            8999999999999999999999999999998876655443

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.66  E-value=4.5e-16  Score=140.42  Aligned_cols=122  Identities=18%  Similarity=0.116  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCc-cCCCCeEEEEcCCCC
Q 020988          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT-ILTSNLALVRADVCR  230 (319)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~-~~~~~i~~~~~d~~~  230 (319)
                      ....+.+...+...++.+|||||||+|.++..+++.+.  +|+|+|+|+.+++.|+++....+. ....++.+..+|+..
T Consensus        43 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~  120 (293)
T 3thr_A           43 AEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF--SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT  120 (293)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGG
T ss_pred             HHHHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhh
Confidence            33456666777777889999999999999999999877  999999999999999987633210 012478899999988


Q ss_pred             CC---CCCCCccEEEec-ccccCCCC-------HHHHHHHHHHhhcCCCeeEEEEe
Q 020988          231 LP---FASGFVDAVHAG-AALHCWPS-------PSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       231 lp---~~~~~fD~V~~~-~vl~h~~d-------~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      ++   +.+++||+|++. .+++|+++       +..+++++.++|||||.+.+...
T Consensus       121 ~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  176 (293)
T 3thr_A          121 LDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR  176 (293)
T ss_dssp             HHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            87   778999999998 89999999       88999999999988776554444

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.66  E-value=1e-15  Score=131.34  Aligned_cols=99  Identities=21%  Similarity=0.166  Sum_probs=88.0

Q ss_pred             CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecc
Q 020988          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (319)
Q Consensus       166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (319)
                      ++.+|||||||+|.++..+   + ..+++|+|+|+.+++.++++.        .++.++.+|+.++|+++++||+|++.+
T Consensus        36 ~~~~vLdiG~G~G~~~~~l---~-~~~v~~vD~s~~~~~~a~~~~--------~~~~~~~~d~~~~~~~~~~fD~v~~~~  103 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL---P-YPQKVGVEPSEAMLAVGRRRA--------PEATWVRAWGEALPFPGESFDVVLLFT  103 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC---C-CSEEEEECCCHHHHHHHHHHC--------TTSEEECCCTTSCCSCSSCEEEEEEES
T ss_pred             CCCeEEEECCCCCHhHHhC---C-CCeEEEEeCCHHHHHHHHHhC--------CCcEEEEcccccCCCCCCcEEEEEEcC
Confidence            7889999999999998877   2 238999999999999999874        478999999999998889999999999


Q ss_pred             cccCCCCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988          246 ALHCWPSPSNAASVFSSSYSLLSICYLLQFR  276 (319)
Q Consensus       246 vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~  276 (319)
                      +++|++++..+++++.++|||+|...+..+.
T Consensus       104 ~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~  134 (211)
T 2gs9_A          104 TLEFVEDVERVLLEARRVLRPGGALVVGVLE  134 (211)
T ss_dssp             CTTTCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             hhhhcCCHHHHHHHHHHHcCCCCEEEEEecC
Confidence            9999999999999999999998877666553

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.66  E-value=5.9e-16  Score=132.65  Aligned_cols=107  Identities=17%  Similarity=0.159  Sum_probs=91.2

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (319)
                      .++.+|||||||+|.++..+++.++. +++|+|+|+.+++.++++...     ..++.++++|+.++++++++||+|++.
T Consensus        41 ~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~-----~~~i~~~~~d~~~~~~~~~~fD~v~~~  114 (215)
T 2pxx_A           41 RPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAH-----VPQLRWETMDVRKLDFPSASFDVVLEK  114 (215)
T ss_dssp             CTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTT-----CTTCEEEECCTTSCCSCSSCEEEEEEE
T ss_pred             CCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhccc-----CCCcEEEEcchhcCCCCCCcccEEEEC
Confidence            56789999999999999999998753 899999999999999998753     358999999999998888899999999


Q ss_pred             ccccCCC---------------CHHHHHHHHHHhhcCCCeeEEEEeec
Q 020988          245 AALHCWP---------------SPSNAASVFSSSYSLLSICYLLQFRY  277 (319)
Q Consensus       245 ~vl~h~~---------------d~~~~l~el~rvlk~g~~~g~~~~~~  277 (319)
                      .+++|+.               ++..+++++.++|||+|...+..+..
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  162 (215)
T 2pxx_A          115 GTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA  162 (215)
T ss_dssp             SHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             cchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence            9887765               55788999999998887666665543

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.66  E-value=1e-15  Score=130.95  Aligned_cols=107  Identities=15%  Similarity=0.232  Sum_probs=90.0

Q ss_pred             ccCCCeEEEEcCCcChH-HHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEE
Q 020988          164 SAQGGLLVDVSCGSGLF-SRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH  242 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~-~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~  242 (319)
                      ..++.+|||+|||+|.+ ...+.+.+.  +|+|+|+|+.+++.++++....    ..++.++++|+.++++++++||+|+
T Consensus        21 ~~~~~~vLDiGcG~G~~~~~~~~~~~~--~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~~~~~~fD~v~   94 (209)
T 2p8j_A           21 SNLDKTVLDCGAGGDLPPLSIFVEDGY--KTYGIEISDLQLKKAENFSREN----NFKLNISKGDIRKLPFKDESMSFVY   94 (209)
T ss_dssp             SSSCSEEEEESCCSSSCTHHHHHHTTC--EEEEEECCHHHHHHHHHHHHHH----TCCCCEEECCTTSCCSCTTCEEEEE
T ss_pred             cCCCCEEEEECCCCCHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHhc----CCceEEEECchhhCCCCCCceeEEE
Confidence            45678999999999997 455555444  9999999999999999988664    2578999999999998889999999


Q ss_pred             ecccccCC--CCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988          243 AGAALHCW--PSPSNAASVFSSSYSLLSICYLLQFR  276 (319)
Q Consensus       243 ~~~vl~h~--~d~~~~l~el~rvlk~g~~~g~~~~~  276 (319)
                      +..+++|+  .++..+++++.++|||+|...+..+.
T Consensus        95 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  130 (209)
T 2p8j_A           95 SYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLT  130 (209)
T ss_dssp             ECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence            99999999  56778899999999988776666553

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.66  E-value=1.2e-15  Score=131.05  Aligned_cols=109  Identities=18%  Similarity=0.191  Sum_probs=92.6

Q ss_pred             HHHHHhh-ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988          157 MAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (319)
Q Consensus       157 ~l~~~l~-~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (319)
                      .+.+.+. ..++.+|||||||+|.++..+++.+.  +|+|+|+|+.+++.+++.       ...++.++.+|+.++ +.+
T Consensus        36 ~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~-------~~~~~~~~~~d~~~~-~~~  105 (218)
T 3ou2_A           36 AALERLRAGNIRGDVLELASGTGYWTRHLSGLAD--RVTALDGSAEMIAEAGRH-------GLDNVEFRQQDLFDW-TPD  105 (218)
T ss_dssp             HHHHHHTTTTSCSEEEEESCTTSHHHHHHHHHSS--EEEEEESCHHHHHHHGGG-------CCTTEEEEECCTTSC-CCS
T ss_pred             HHHHHHhcCCCCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHhc-------CCCCeEEEecccccC-CCC
Confidence            3444443 55678999999999999999999865  999999999999999882       236899999999988 678


Q ss_pred             CCccEEEecccccCCCCH--HHHHHHHHHhhcCCCeeEEEEe
Q 020988          236 GFVDAVHAGAALHCWPSP--SNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~--~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      ++||+|++..+++|++++  ..+++++.++|+|+|...+..+
T Consensus       106 ~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  147 (218)
T 3ou2_A          106 RQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDV  147 (218)
T ss_dssp             SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            899999999999999986  7889999999998877666655

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.65  E-value=3.4e-16  Score=141.55  Aligned_cols=110  Identities=9%  Similarity=0.044  Sum_probs=84.3

Q ss_pred             cCCCeEEEEcCCcChHHH----HHHhhCCCCeE--EEEeCCHHHHHHHHHHHhhcCccCCCCeEE--EEcCCCCCC----
Q 020988          165 AQGGLLVDVSCGSGLFSR----KFAKSGTYSGV--VALDFSENMLRQCYDFIKQDNTILTSNLAL--VRADVCRLP----  232 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~----~l~~~g~~~~v--~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~--~~~d~~~lp----  232 (319)
                      .++.+|||||||+|.++.    .+...++...+  +|+|+|++|++.|++++....  ...++.+  ..+++++++    
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~  128 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTS--NLENVKFAWHKETSSEYQSRML  128 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCS--SCTTEEEEEECSCHHHHHHHHH
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhcc--CCCcceEEEEecchhhhhhhhc
Confidence            456799999999997654    33444455544  999999999999999876421  1234544  455555443    


Q ss_pred             --CCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988          233 --FASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFR  276 (319)
Q Consensus       233 --~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~  276 (319)
                        +.+++||+|++.+++||++|+..++++++|+|||||.+.+....
T Consensus       129 ~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~  174 (292)
T 2aot_A          129 EKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVS  174 (292)
T ss_dssp             TTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             cccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEec
Confidence              55789999999999999999999999999999999887776553

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.65  E-value=1.9e-15  Score=135.95  Aligned_cols=113  Identities=17%  Similarity=0.158  Sum_probs=95.6

Q ss_pred             HHHHHhhccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (319)
Q Consensus       157 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (319)
                      .+.+.+...++.+|||||||+|.++..+++. +.  +|+|+|+|+.+++.+++++...+  ...++.++.+|+.++|   
T Consensus        55 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~--~v~gvd~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~---  127 (287)
T 1kpg_A           55 LALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDV--NVVGLTLSKNQANHVQQLVANSE--NLRSKRVLLAGWEQFD---  127 (287)
T ss_dssp             HHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCC--EEEEEESCHHHHHHHHHHHHTCC--CCSCEEEEESCGGGCC---
T ss_pred             HHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC--CCCCeEEEECChhhCC---
Confidence            3444455667889999999999999999854 44  99999999999999999987642  2358999999998776   


Q ss_pred             CCccEEEecccccCC--CCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988          236 GFVDAVHAGAALHCW--PSPSNAASVFSSSYSLLSICYLLQFR  276 (319)
Q Consensus       236 ~~fD~V~~~~vl~h~--~d~~~~l~el~rvlk~g~~~g~~~~~  276 (319)
                      ++||+|++..+++|+  .++..+++++.++|||+|...+..+.
T Consensus       128 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  170 (287)
T 1kpg_A          128 EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTIT  170 (287)
T ss_dssp             CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            789999999999999  67899999999999999988776664

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.65  E-value=1e-15  Score=143.88  Aligned_cols=112  Identities=16%  Similarity=0.175  Sum_probs=95.8

Q ss_pred             ccCCCeEEEEcCCcChHHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHhhc-----CccCCCCeEEEEcCCCCC------
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQD-----NTILTSNLALVRADVCRL------  231 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~-----~~~~~~~i~~~~~d~~~l------  231 (319)
                      ..++.+|||||||+|.++..+++.. +..+|+|+|+|+.+++.|+++++..     +.....++.++++|+.++      
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~  160 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE  160 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence            4578899999999999999998873 5679999999999999999987542     101236899999999987      


Q ss_pred             CCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          232 PFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      ++++++||+|++..+++|++++..+++++.++|||||.+.+..+
T Consensus       161 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~  204 (383)
T 4fsd_A          161 GVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDV  204 (383)
T ss_dssp             CCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEe
Confidence            88889999999999999999999999999999999887666543

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.64  E-value=5.5e-16  Score=128.48  Aligned_cols=104  Identities=13%  Similarity=0.205  Sum_probs=90.9

Q ss_pred             HHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCc
Q 020988          159 QEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFV  238 (319)
Q Consensus       159 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~f  238 (319)
                      .+.+...++.+|||||||+|.++..+++.+.  +++|+|+++.+++.++++        ..++.++.+|   +++++++|
T Consensus        10 ~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~--------~~~v~~~~~d---~~~~~~~~   76 (170)
T 3i9f_A           10 LPNIFEGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEK--------FDSVITLSDP---KEIPDNSV   76 (170)
T ss_dssp             HHHHHSSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHH--------CTTSEEESSG---GGSCTTCE
T ss_pred             HHhcCcCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHh--------CCCcEEEeCC---CCCCCCce
Confidence            3445566788999999999999999999875  999999999999999987        2488999998   67778899


Q ss_pred             cEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          239 DAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       239 D~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      |+|++..+++|++++..+++++.++|||+|...+..+
T Consensus        77 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~  113 (170)
T 3i9f_A           77 DFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDW  113 (170)
T ss_dssp             EEEEEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEEEccchhcccCHHHHHHHHHHhcCCCCEEEEEEc
Confidence            9999999999999999999999999998876666554

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.64  E-value=7.9e-16  Score=135.60  Aligned_cols=111  Identities=8%  Similarity=0.014  Sum_probs=93.2

Q ss_pred             HHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCC
Q 020988          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF  237 (319)
Q Consensus       158 l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~  237 (319)
                      +...+...++.+|||||||+|.++..+++.+ ..+|+|+|+|+.+++.++++....     .++.++++|+..+++++++
T Consensus        85 ~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~d~~~~~~~~~~  158 (254)
T 1xtp_A           85 FIASLPGHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGM-----PVGKFILASMETATLPPNT  158 (254)
T ss_dssp             HHHTSTTCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTS-----SEEEEEESCGGGCCCCSSC
T ss_pred             HHHhhcccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccC-----CceEEEEccHHHCCCCCCC
Confidence            3344455578999999999999999998886 357999999999999999987542     5799999999999888889


Q ss_pred             ccEEEecccccCCCC--HHHHHHHHHHhhcCCCeeEEEE
Q 020988          238 VDAVHAGAALHCWPS--PSNAASVFSSSYSLLSICYLLQ  274 (319)
Q Consensus       238 fD~V~~~~vl~h~~d--~~~~l~el~rvlk~g~~~g~~~  274 (319)
                      ||+|++..+++|+++  +..+++++.++|||+|.+.+..
T Consensus       159 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  197 (254)
T 1xtp_A          159 YDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKE  197 (254)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence            999999999999954  7788999999998876555443

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.64  E-value=1.9e-15  Score=131.30  Aligned_cols=109  Identities=19%  Similarity=0.282  Sum_probs=93.5

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCcc--CCCCeEEEEcCCCCCCCCCCCccEEE
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI--LTSNLALVRADVCRLPFASGFVDAVH  242 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~--~~~~i~~~~~d~~~lp~~~~~fD~V~  242 (319)
                      .++.+|||||||+|.++..+++.+.  +|+|+|+|+.+++.++++....+..  ...++.++.+|+..+++.+++||+|+
T Consensus        29 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~  106 (235)
T 3sm3_A           29 QEDDEILDIGCGSGKISLELASKGY--SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV  106 (235)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence            4678999999999999999999865  9999999999999999988654210  01368999999999998889999999


Q ss_pred             ecccccCCCCHH---HHHHHHHHhhcCCCeeEEEEe
Q 020988          243 AGAALHCWPSPS---NAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       243 ~~~vl~h~~d~~---~~l~el~rvlk~g~~~g~~~~  275 (319)
                      +..+++|++++.   .+++++.++|+|+|...+..+
T Consensus       107 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  142 (235)
T 3sm3_A          107 MQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEF  142 (235)
T ss_dssp             EESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEEC
Confidence            999999999998   889999999988877666554

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.63  E-value=2.7e-15  Score=133.94  Aligned_cols=118  Identities=19%  Similarity=0.279  Sum_probs=96.7

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHH------HHHHHHHHHhhcCccCCCCeEEEEcC-
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSEN------MLRQCYDFIKQDNTILTSNLALVRAD-  227 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~------~l~~a~~~~~~~~~~~~~~i~~~~~d-  227 (319)
                      ..+.+.+...++.+|||||||+|.++..+++. ++..+|+|+|+|+.      +++.|++++...+  ...+++++.+| 
T Consensus        33 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~  110 (275)
T 3bkx_A           33 LAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGP--LGDRLTVHFNTN  110 (275)
T ss_dssp             HHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTST--TGGGEEEECSCC
T ss_pred             HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcC--CCCceEEEECCh
Confidence            34555566678899999999999999999988 45579999999997      9999999987642  12579999998 


Q ss_pred             --CCCCCCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          228 --VCRLPFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       228 --~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                        ...+|+++++||+|++.++++|++++..+++.+.++++++|...+..+
T Consensus       111 ~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~  160 (275)
T 3bkx_A          111 LSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEW  160 (275)
T ss_dssp             TTTCCGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEE
T ss_pred             hhhccCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEe
Confidence              456677789999999999999999999877777777777887666554

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.63  E-value=1.6e-14  Score=123.49  Aligned_cols=118  Identities=15%  Similarity=0.028  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC
Q 020988          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (319)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (319)
                      .+....+...+...++.+|||||||+|.++..+++.++..+|+|+|+|+.+++.|+++++..+   ..+++++.+|+.+.
T Consensus        26 ~~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~  102 (204)
T 3e05_A           26 QEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFV---ARNVTLVEAFAPEG  102 (204)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHT---CTTEEEEECCTTTT
T ss_pred             HHHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC---CCcEEEEeCChhhh
Confidence            334455666777788899999999999999999999877799999999999999999987653   36899999999765


Q ss_pred             CCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          232 PFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      ....++||+|++..+++   ++..+++++.++|+|+|...+...
T Consensus       103 ~~~~~~~D~i~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~  143 (204)
T 3e05_A          103 LDDLPDPDRVFIGGSGG---MLEEIIDAVDRRLKSEGVIVLNAV  143 (204)
T ss_dssp             CTTSCCCSEEEESCCTT---CHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             hhcCCCCCEEEECCCCc---CHHHHHHHHHHhcCCCeEEEEEec
Confidence            43447899999988776   788999999999999998776655

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.63  E-value=2e-15  Score=132.06  Aligned_cols=110  Identities=14%  Similarity=0.139  Sum_probs=89.7

Q ss_pred             HHHHHHhhcc--CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988          156 KMAQEYFKSA--QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (319)
Q Consensus       156 ~~l~~~l~~~--~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (319)
                      +.+.+.+...  ++.+|||||||+|.++..+++.+.  +++|+|+|+.+++.++++....    ..++.++++|+.++++
T Consensus        25 ~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~~~~~D~s~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~~   98 (246)
T 1y8c_A           25 DFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFK--NTWAVDLSQEMLSEAENKFRSQ----GLKPRLACQDISNLNI   98 (246)
T ss_dssp             HHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSS--EEEEECSCHHHHHHHHHHHHHT----TCCCEEECCCGGGCCC
T ss_pred             HHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCCC--cEEEEECCHHHHHHHHHHHhhc----CCCeEEEecccccCCc
Confidence            4455555443  778999999999999999999876  9999999999999999988764    2378999999999887


Q ss_pred             CCCCccEEEecc-cccCCC---CHHHHHHHHHHhhcCCCeeEE
Q 020988          234 ASGFVDAVHAGA-ALHCWP---SPSNAASVFSSSYSLLSICYL  272 (319)
Q Consensus       234 ~~~~fD~V~~~~-vl~h~~---d~~~~l~el~rvlk~g~~~g~  272 (319)
                      + ++||+|++.. +++|++   ++..+++++.++|+|+|.+.+
T Consensus        99 ~-~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~  140 (246)
T 1y8c_A           99 N-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIF  140 (246)
T ss_dssp             S-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             c-CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence            6 8999999998 999994   456677777777777655443

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.62  E-value=1.6e-15  Score=132.97  Aligned_cols=106  Identities=10%  Similarity=0.100  Sum_probs=90.8

Q ss_pred             CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecc
Q 020988          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (319)
Q Consensus       166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (319)
                      ++.+|||||||+|.++..+++.+ ..+|+|+|+|+.+++.|++++...+   ..++.++.+|+..+++.+++||+|++..
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~d~~~~~~~~~~fD~v~~~~  154 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEG---KRVRNYFCCGLQDFTPEPDSYDVIWIQW  154 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGG---GGEEEEEECCGGGCCCCSSCEEEEEEES
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcC---CceEEEEEcChhhcCCCCCCEEEEEEcc
Confidence            57899999999999999988876 4599999999999999999886531   2468999999999888878999999999


Q ss_pred             cccCCCCHH--HHHHHHHHhhcCCCeeEEEEe
Q 020988          246 ALHCWPSPS--NAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       246 vl~h~~d~~--~~l~el~rvlk~g~~~g~~~~  275 (319)
                      +++|++++.  .+++++.++|+|+|.+.+..+
T Consensus       155 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  186 (241)
T 2ex4_A          155 VIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDN  186 (241)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence            999998865  889999999988776655443

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.62  E-value=1.7e-15  Score=130.07  Aligned_cols=99  Identities=19%  Similarity=0.198  Sum_probs=87.1

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (319)
                      .++.+|||||||+|.++..+++.+.  +|+|+|+|+.+++.++++.         ++.++.+|+..++ .+++||+|++.
T Consensus        42 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~---------~~~~~~~d~~~~~-~~~~fD~v~~~  109 (211)
T 3e23_A           42 PAGAKILELGCGAGYQAEAMLAAGF--DVDATDGSPELAAEASRRL---------GRPVRTMLFHQLD-AIDAYDAVWAH  109 (211)
T ss_dssp             CTTCEEEESSCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHH---------TSCCEECCGGGCC-CCSCEEEEEEC
T ss_pred             CCCCcEEEECCCCCHHHHHHHHcCC--eEEEECCCHHHHHHHHHhc---------CCceEEeeeccCC-CCCcEEEEEec
Confidence            4678999999999999999999865  9999999999999999886         4568889999988 67899999999


Q ss_pred             ccccCCC--CHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          245 AALHCWP--SPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       245 ~vl~h~~--d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      .+++|++  ++..+++++.++|||+|.+.+...
T Consensus       110 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  142 (211)
T 3e23_A          110 ACLLHVPRDELADVLKLIWRALKPGGLFYASYK  142 (211)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEc
Confidence            9999998  777899999999998876655543

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.62  E-value=4.6e-15  Score=135.54  Aligned_cols=113  Identities=13%  Similarity=0.141  Sum_probs=96.0

Q ss_pred             HHHHHhhccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (319)
Q Consensus       157 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (319)
                      .+.+.+...++.+|||||||+|.++..+++. +.  +|+|+|+|+.+++.|+++....+  ...++.++.+|+.++|   
T Consensus        81 ~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~--~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~---  153 (318)
T 2fk8_A           81 LNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDV--NVIGLTLSKNQHARCEQVLASID--TNRSRQVLLQGWEDFA---  153 (318)
T ss_dssp             HHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCC--EEEEEESCHHHHHHHHHHHHTSC--CSSCEEEEESCGGGCC---
T ss_pred             HHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CCCceEEEECChHHCC---
Confidence            3444455567889999999999999999987 55  99999999999999999987642  2356999999998875   


Q ss_pred             CCccEEEecccccCC--CCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988          236 GFVDAVHAGAALHCW--PSPSNAASVFSSSYSLLSICYLLQFR  276 (319)
Q Consensus       236 ~~fD~V~~~~vl~h~--~d~~~~l~el~rvlk~g~~~g~~~~~  276 (319)
                      ++||+|++..+++|+  +++..+++++.++|||+|...+..+.
T Consensus       154 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  196 (318)
T 2fk8_A          154 EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSV  196 (318)
T ss_dssp             CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            789999999999999  57889999999999999988777664

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.62  E-value=4.6e-15  Score=133.42  Aligned_cols=111  Identities=14%  Similarity=0.121  Sum_probs=93.8

Q ss_pred             HHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCC
Q 020988          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF  237 (319)
Q Consensus       158 l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~  237 (319)
                      +.+.+...++.+|||+|||+|.++..+++.+.  +|+|+|+|+.+++.+++++...+    .+++++++|+..+++ +++
T Consensus       112 ~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~g~--~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~~-~~~  184 (286)
T 3m70_A          112 VVDAAKIISPCKVLDLGCGQGRNSLYLSLLGY--DVTSWDHNENSIAFLNETKEKEN----LNISTALYDINAANI-QEN  184 (286)
T ss_dssp             HHHHHHHSCSCEEEEESCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT----CCEEEEECCGGGCCC-CSC
T ss_pred             HHHHhhccCCCcEEEECCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHHcC----CceEEEEeccccccc-cCC
Confidence            33444455789999999999999999999876  99999999999999999987752    389999999999887 789


Q ss_pred             ccEEEecccccCCCCH--HHHHHHHHHhhcCCCeeEEEEe
Q 020988          238 VDAVHAGAALHCWPSP--SNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       238 fD~V~~~~vl~h~~d~--~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      ||+|++..+++|++++  ..+++++.++|+|+|.+.++..
T Consensus       185 fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  224 (286)
T 3m70_A          185 YDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAA  224 (286)
T ss_dssp             EEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            9999999999999654  4889999999988877655443

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.62  E-value=3e-15  Score=129.56  Aligned_cols=104  Identities=22%  Similarity=0.270  Sum_probs=90.4

Q ss_pred             CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecc
Q 020988          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (319)
Q Consensus       166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (319)
                      ++.+|||||||+|.++..+++.++  +++|+|+|+.+++.|+++....    ..+++++.+|+.++++++++||+|++..
T Consensus        38 ~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~~~~~~~D~v~~~~  111 (227)
T 1ve3_A           38 KRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSR----ESNVEFIVGDARKLSFEDKTFDYVIFID  111 (227)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCCEEEECCTTSCCSCTTCEEEEEEES
T ss_pred             CCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhc----CCCceEEECchhcCCCCCCcEEEEEEcC
Confidence            478999999999999999999887  9999999999999999988764    3689999999999888888999999999


Q ss_pred             c--ccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          246 A--LHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       246 v--l~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      +  ++|.+++..+++++.++|+|+|...+..+
T Consensus       112 ~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  143 (227)
T 1ve3_A          112 SIVHFEPLELNQVFKEVRRVLKPSGKFIMYFT  143 (227)
T ss_dssp             CGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             chHhCCHHHHHHHHHHHHHHcCCCcEEEEEec
Confidence            9  55666778899999999998776655544

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.62  E-value=8.2e-15  Score=131.89  Aligned_cols=136  Identities=10%  Similarity=-0.036  Sum_probs=101.4

Q ss_pred             hhHHhHHhHHHhhhhC--------CCCCcHHH---HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCC
Q 020988          131 VSFLYERGWRQNFNRS--------GFPGPDEE---FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFS  199 (319)
Q Consensus       131 ~s~~~~~~w~~~~~~~--------~~~~~~~~---~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s  199 (319)
                      ....+|..|.+.+...        .++..+..   .+.-..++...++.+|||||||+|.++..+....+..+|+|+|+|
T Consensus        76 ~~~~~E~~wa~~l~~~~~p~~~l~~fpy~~~~~~l~~~E~~la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis  155 (298)
T 3fpf_A           76 LGMKLEMEKAQEVIESDSPWETLRSFYFYPRYLELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIE  155 (298)
T ss_dssp             HHHHHHHHHHHHHHHCSSHHHHHHTSTTHHHHHHHHHHHHHHTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESS
T ss_pred             HHHHHHHHHHHHHhccCChHHhhccCCCcccHHHHHHHHHHHcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECC
Confidence            3445677788877332        12222221   222223456778999999999999876554444345699999999


Q ss_pred             HHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEE
Q 020988          200 ENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQ  274 (319)
Q Consensus       200 ~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~  274 (319)
                      +++++.|+++++..+   ..+++++++|+.+++  +++||+|++...   .+++.++++++.++|||||.+.+..
T Consensus       156 ~~~l~~Ar~~~~~~g---l~~v~~v~gDa~~l~--d~~FDvV~~~a~---~~d~~~~l~el~r~LkPGG~Lvv~~  222 (298)
T 3fpf_A          156 PDIAELSRKVIEGLG---VDGVNVITGDETVID--GLEFDVLMVAAL---AEPKRRVFRNIHRYVDTETRIIYRT  222 (298)
T ss_dssp             HHHHHHHHHHHHHHT---CCSEEEEESCGGGGG--GCCCSEEEECTT---CSCHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             HHHHHHHHHHHHhcC---CCCeEEEECchhhCC--CCCcCEEEECCC---ccCHHHHHHHHHHHcCCCcEEEEEc
Confidence            999999999987753   268999999999876  689999998655   5789999999999999999776544

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.62  E-value=5.3e-15  Score=147.68  Aligned_cols=113  Identities=13%  Similarity=0.142  Sum_probs=96.3

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHhhcCc---cCCCCeEEEEcCCCC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNT---ILTSNLALVRADVCR  230 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~---~~~~~i~~~~~d~~~  230 (319)
                      .+.+.+.+...++.+|||||||+|.++..+++.+ +..+|+|+|+|+.|++.|++++.....   ....+++++++|+.+
T Consensus       710 le~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~d  789 (950)
T 3htx_A          710 VEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILE  789 (950)
T ss_dssp             HHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTS
T ss_pred             HHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHh
Confidence            5556667766788999999999999999999987 446999999999999999997654210   123589999999999


Q ss_pred             CCCCCCCccEEEecccccCCCCHH--HHHHHHHHhhcCC
Q 020988          231 LPFASGFVDAVHAGAALHCWPSPS--NAASVFSSSYSLL  267 (319)
Q Consensus       231 lp~~~~~fD~V~~~~vl~h~~d~~--~~l~el~rvlk~g  267 (319)
                      +++.+++||+|++..+++|++++.  .+++++.++||||
T Consensus       790 Lp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG  828 (950)
T 3htx_A          790 FDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK  828 (950)
T ss_dssp             CCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred             CCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC
Confidence            999889999999999999998876  4889999999998

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.62  E-value=1.8e-15  Score=132.61  Aligned_cols=99  Identities=17%  Similarity=0.288  Sum_probs=87.7

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC--CCCCCCccEEE
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAVH  242 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD~V~  242 (319)
                      .++.+|||||||+|.++..+++.+.  +|+|+|+|+.+++.++++           +.++.+|+.+.  ++++++||+|+
T Consensus        40 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~-----------~~~~~~d~~~~~~~~~~~~fD~i~  106 (240)
T 3dli_A           40 KGCRRVLDIGCGRGEFLELCKEEGI--ESIGVDINEDMIKFCEGK-----------FNVVKSDAIEYLKSLPDKYLDGVM  106 (240)
T ss_dssp             TTCSCEEEETCTTTHHHHHHHHHTC--CEEEECSCHHHHHHHHTT-----------SEEECSCHHHHHHTSCTTCBSEEE
T ss_pred             cCCCeEEEEeCCCCHHHHHHHhCCC--cEEEEECCHHHHHHHHhh-----------cceeeccHHHHhhhcCCCCeeEEE
Confidence            4678999999999999999999876  899999999999998863           67889998775  77889999999


Q ss_pred             ecccccCCCCH--HHHHHHHHHhhcCCCeeEEEEee
Q 020988          243 AGAALHCWPSP--SNAASVFSSSYSLLSICYLLQFR  276 (319)
Q Consensus       243 ~~~vl~h~~d~--~~~l~el~rvlk~g~~~g~~~~~  276 (319)
                      +..+++|++++  ..+++++.++|||+|.+.+..+.
T Consensus       107 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  142 (240)
T 3dli_A          107 ISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPN  142 (240)
T ss_dssp             EESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEEC
T ss_pred             ECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence            99999999965  89999999999999988776654

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.60  E-value=8.8e-15  Score=129.92  Aligned_cols=99  Identities=20%  Similarity=0.227  Sum_probs=83.2

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (319)
                      .++.+|||||||+|.++..+++.+.  +|+|+|+|+.+++.|+++.        .++.++++|+.++++ +++||+|++.
T Consensus        49 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~--------~~~~~~~~d~~~~~~-~~~fD~v~~~  117 (263)
T 3pfg_A           49 PKAASLLDVACGTGMHLRHLADSFG--TVEGLELSADMLAIARRRN--------PDAVLHHGDMRDFSL-GRRFSAVTCM  117 (263)
T ss_dssp             TTCCEEEEETCTTSHHHHHHTTTSS--EEEEEESCHHHHHHHHHHC--------TTSEEEECCTTTCCC-SCCEEEEEEC
T ss_pred             CCCCcEEEeCCcCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhC--------CCCEEEECChHHCCc-cCCcCEEEEc
Confidence            3568999999999999999999876  9999999999999999874        378999999999987 6899999999


Q ss_pred             c-cccCCCCHH---HHHHHHHHhhcCCCeeEEEEeec
Q 020988          245 A-ALHCWPSPS---NAASVFSSSYSLLSICYLLQFRY  277 (319)
Q Consensus       245 ~-vl~h~~d~~---~~l~el~rvlk~g~~~g~~~~~~  277 (319)
                      . +++|++++.   .+++++.++|||+   |.+++..
T Consensus       118 ~~~l~~~~~~~~~~~~l~~~~~~L~pg---G~l~i~~  151 (263)
T 3pfg_A          118 FSSIGHLAGQAELDAALERFAAHVLPD---GVVVVEP  151 (263)
T ss_dssp             TTGGGGSCHHHHHHHHHHHHHHTEEEE---EEEEECC
T ss_pred             CchhhhcCCHHHHHHHHHHHHHhcCCC---cEEEEEe
Confidence            8 999997544   5567777776654   5566643

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.60  E-value=1.4e-15  Score=129.56  Aligned_cols=103  Identities=14%  Similarity=0.111  Sum_probs=85.8

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (319)
                      .++ +|||||||+|.++..+++.+.  +|+|+|+|+.+++.++++....    ..++.++++|+.++++++++||+|++.
T Consensus        29 ~~~-~vLdiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~~~~~~fD~v~~~  101 (202)
T 2kw5_A           29 PQG-KILCLAEGEGRNACFLASLGY--EVTAVDQSSVGLAKAKQLAQEK----GVKITTVQSNLADFDIVADAWEGIVSI  101 (202)
T ss_dssp             CSS-EEEECCCSCTHHHHHHHTTTC--EEEEECSSHHHHHHHHHHHHHH----TCCEEEECCBTTTBSCCTTTCSEEEEE
T ss_pred             CCC-CEEEECCCCCHhHHHHHhCCC--eEEEEECCHHHHHHHHHHHHhc----CCceEEEEcChhhcCCCcCCccEEEEE
Confidence            345 999999999999999998865  9999999999999999988764    237999999999998888899999995


Q ss_pred             ccccCC--CCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988          245 AALHCW--PSPSNAASVFSSSYSLLSICYLLQFR  276 (319)
Q Consensus       245 ~vl~h~--~d~~~~l~el~rvlk~g~~~g~~~~~  276 (319)
                      .  .|+  .++..+++++.++|+|+|...+..+.
T Consensus       102 ~--~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  133 (202)
T 2kw5_A          102 F--CHLPSSLRQQLYPKVYQGLKPGGVFILEGFA  133 (202)
T ss_dssp             C--CCCCHHHHHHHHHHHHTTCCSSEEEEEEEEC
T ss_pred             h--hcCCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            3  455  35667888888898888776666553

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.59  E-value=1.4e-15  Score=133.61  Aligned_cols=103  Identities=10%  Similarity=0.112  Sum_probs=87.4

Q ss_pred             ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC--CCCCCCccEE
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAV  241 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD~V  241 (319)
                      ..++++|||||||+|..+..+++..+ .+++|||+|+.+++.|+++....    ..++.++.+|+..+  ++++++||.|
T Consensus        58 ~~~G~rVLdiG~G~G~~~~~~~~~~~-~~v~~id~~~~~~~~a~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~FD~i  132 (236)
T 3orh_A           58 SSKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQ----THKVIPLKGLWEDVAPTLPDGHFDGI  132 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHTTSCE-EEEEEEECCHHHHHHHHHHGGGC----SSEEEEEESCHHHHGGGSCTTCEEEE
T ss_pred             ccCCCeEEEECCCccHHHHHHHHhCC-cEEEEEeCCHHHHHHHHHHHhhC----CCceEEEeehHHhhcccccccCCceE
Confidence            45789999999999999999988754 58999999999999999998764    46788889887653  5678899999


Q ss_pred             Ee-----cccccCCCCHHHHHHHHHHhhcCCCeeE
Q 020988          242 HA-----GAALHCWPSPSNAASVFSSSYSLLSICY  271 (319)
Q Consensus       242 ~~-----~~vl~h~~d~~~~l~el~rvlk~g~~~g  271 (319)
                      +.     ..+++|++++..+++++.|+|||||.+.
T Consensus       133 ~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~  167 (236)
T 3orh_A          133 LYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLT  167 (236)
T ss_dssp             EECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEE
T ss_pred             EEeeeecccchhhhcchhhhhhhhhheeCCCCEEE
Confidence            74     5678899999999999999999887654

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.59  E-value=7.6e-15  Score=130.31  Aligned_cols=100  Identities=24%  Similarity=0.217  Sum_probs=86.8

Q ss_pred             CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecc
Q 020988          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (319)
Q Consensus       166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (319)
                      ++.+|||||||+|.++..+++.+.  +++|+|+|+.+++.++++..       .+  ++++|+.++++++++||+|++.+
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~-------~~--~~~~d~~~~~~~~~~fD~v~~~~  122 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQERGF--EVVLVDPSKEMLEVAREKGV-------KN--VVEAKAEDLPFPSGAFEAVLALG  122 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTC--EEEEEESCHHHHHHHHHHTC-------SC--EEECCTTSCCSCTTCEEEEEECS
T ss_pred             CCCeEEEeCCCcCHHHHHHHHcCC--eEEEEeCCHHHHHHHHhhcC-------CC--EEECcHHHCCCCCCCEEEEEEcc
Confidence            678999999999999999998865  99999999999999998752       12  88999999998889999999998


Q ss_pred             cccCC-CCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988          246 ALHCW-PSPSNAASVFSSSYSLLSICYLLQFR  276 (319)
Q Consensus       246 vl~h~-~d~~~~l~el~rvlk~g~~~g~~~~~  276 (319)
                      +++|+ +++..+++++.++|||+|...+..+.
T Consensus       123 ~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  154 (260)
T 2avn_A          123 DVLSYVENKDKAFSEIRRVLVPDGLLIATVDN  154 (260)
T ss_dssp             SHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             hhhhccccHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            77765 78999999999999998776665553

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.59  E-value=4.3e-15  Score=135.10  Aligned_cols=108  Identities=14%  Similarity=0.090  Sum_probs=90.7

Q ss_pred             ccCCCeEEEEcCCcChHHHHHH-hhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEE
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFA-KSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH  242 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~-~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~  242 (319)
                      ..++.+|||||||+|.++..++ ...+..+|+|+|+|+.+++.|++++...+  ...+++++++|+.+++++ ++||+|+
T Consensus       116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~-~~fD~v~  192 (305)
T 3ocj_A          116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHA--LAGQITLHRQDAWKLDTR-EGYDLLT  192 (305)
T ss_dssp             CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTST--TGGGEEEEECCGGGCCCC-SCEEEEE
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcC--CCCceEEEECchhcCCcc-CCeEEEE
Confidence            4678899999999999999885 44566799999999999999999987642  223599999999999987 8999999


Q ss_pred             ecccccCCCCHHH---HHHHHHHhhcCCCeeEEEE
Q 020988          243 AGAALHCWPSPSN---AASVFSSSYSLLSICYLLQ  274 (319)
Q Consensus       243 ~~~vl~h~~d~~~---~l~el~rvlk~g~~~g~~~  274 (319)
                      +..+++|++++..   +++++.++|||||.+.+..
T Consensus       193 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  227 (305)
T 3ocj_A          193 SNGLNIYEPDDARVTELYRRFWQALKPGGALVTSF  227 (305)
T ss_dssp             CCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             ECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence            9999999999986   5888888888876555443

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.59  E-value=1.3e-14  Score=120.81  Aligned_cols=113  Identities=13%  Similarity=0.111  Sum_probs=90.5

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC-CCCC
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFA  234 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~~  234 (319)
                      ..+.+.+...++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.|++++...+  ...++ ++.+|..+ ++..
T Consensus        15 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~~-~~~~d~~~~~~~~   91 (178)
T 3hm2_A           15 ALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLG--VSDRI-AVQQGAPRAFDDV   91 (178)
T ss_dssp             HHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTT--CTTSE-EEECCTTGGGGGC
T ss_pred             HHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhC--CCCCE-EEecchHhhhhcc
Confidence            45556666778889999999999999999998666799999999999999999987652  22378 88888754 3433


Q ss_pred             CCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          235 SGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      +++||+|++..+++|    ...++++.++|+|+|...+..+
T Consensus        92 ~~~~D~i~~~~~~~~----~~~l~~~~~~L~~gG~l~~~~~  128 (178)
T 3hm2_A           92 PDNPDVIFIGGGLTA----PGVFAAAWKRLPVGGRLVANAV  128 (178)
T ss_dssp             CSCCSEEEECC-TTC----TTHHHHHHHTCCTTCEEEEEEC
T ss_pred             CCCCCEEEECCcccH----HHHHHHHHHhcCCCCEEEEEee
Confidence            379999999999988    5678999999999987765554

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.58  E-value=5.6e-15  Score=129.73  Aligned_cols=105  Identities=16%  Similarity=0.128  Sum_probs=91.7

Q ss_pred             ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC-----CCc
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS-----GFV  238 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~-----~~f  238 (319)
                      ..++.+|||||||+|.++..+++.++  +|+|+|+|+.+++.++++..      ..+++++++|+.+++...     .+|
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~------~~~~~~~~~d~~~~~~~~~~~~~~~~  125 (245)
T 3ggd_A           54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENT------AANISYRLLDGLVPEQAAQIHSEIGD  125 (245)
T ss_dssp             SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSC------CTTEEEEECCTTCHHHHHHHHHHHCS
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCc------ccCceEEECcccccccccccccccCc
Confidence            35678999999999999999999987  99999999999999999873      348999999999875432     349


Q ss_pred             cEEEecccccCCC--CHHHHHHHHHHhhcCCCeeEEEEee
Q 020988          239 DAVHAGAALHCWP--SPSNAASVFSSSYSLLSICYLLQFR  276 (319)
Q Consensus       239 D~V~~~~vl~h~~--d~~~~l~el~rvlk~g~~~g~~~~~  276 (319)
                      |+|++..+++|++  ++..+++++.++|||+|.+.+..+.
T Consensus       126 d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  165 (245)
T 3ggd_A          126 ANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELG  165 (245)
T ss_dssp             CEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred             cEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            9999999999999  7889999999999999988777663

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.58  E-value=9.9e-15  Score=132.22  Aligned_cols=119  Identities=13%  Similarity=0.125  Sum_probs=92.3

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (319)
Q Consensus       154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (319)
                      ..+.+.+.+.. ++++|||||||+|.++..+++.+.  +|+|+|+|+.+++.|++++...+.....++.++++|+.++++
T Consensus        71 ~~~~~~~~~~~-~~~~vLDlGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~  147 (299)
T 3g2m_A           71 EAREFATRTGP-VSGPVLELAAGMGRLTFPFLDLGW--EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL  147 (299)
T ss_dssp             HHHHHHHHHCC-CCSCEEEETCTTTTTHHHHHTTTC--CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC
T ss_pred             HHHHHHHhhCC-CCCcEEEEeccCCHHHHHHHHcCC--eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc
Confidence            34455555543 345999999999999999999875  999999999999999999876311001579999999999987


Q ss_pred             CCCCccEEEec-ccccCCCC--HHHHHHHHHHhhcCCCeeEEEEee
Q 020988          234 ASGFVDAVHAG-AALHCWPS--PSNAASVFSSSYSLLSICYLLQFR  276 (319)
Q Consensus       234 ~~~~fD~V~~~-~vl~h~~d--~~~~l~el~rvlk~g~~~g~~~~~  276 (319)
                       +++||+|++. .+++|++.  ...+++++.++|||+|.+.+..+.
T Consensus       148 -~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  192 (299)
T 3g2m_A          148 -DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAM  192 (299)
T ss_dssp             -SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             -CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeec
Confidence             6899999865 56777652  468889999999888766655553

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.58  E-value=4.1e-14  Score=126.97  Aligned_cols=107  Identities=15%  Similarity=0.120  Sum_probs=90.5

Q ss_pred             cCCCeEEEEcCCc---ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC---------
Q 020988          165 AQGGLLVDVSCGS---GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---------  232 (319)
Q Consensus       165 ~~~~~VLDiGcG~---G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---------  232 (319)
                      ....+|||||||+   |.++..+.+..+..+|+++|+|+.|++.|++++..     ..+++++++|+.+.+         
T Consensus        76 ~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~-----~~~v~~~~~D~~~~~~~~~~~~~~  150 (274)
T 2qe6_A           76 AGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK-----DPNTAVFTADVRDPEYILNHPDVR  150 (274)
T ss_dssp             TCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT-----CTTEEEEECCTTCHHHHHHSHHHH
T ss_pred             cCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC-----CCCeEEEEeeCCCchhhhccchhh
Confidence            3457999999999   99888777777777999999999999999998853     358999999997631         


Q ss_pred             --CCCCCccEEEecccccCCCC--HHHHHHHHHHhhcCCCeeEEEEee
Q 020988          233 --FASGFVDAVHAGAALHCWPS--PSNAASVFSSSYSLLSICYLLQFR  276 (319)
Q Consensus       233 --~~~~~fD~V~~~~vl~h~~d--~~~~l~el~rvlk~g~~~g~~~~~  276 (319)
                        +...+||+|++..+|||+++  +..+++++.++|+|||.+.+..+.
T Consensus       151 ~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~  198 (274)
T 2qe6_A          151 RMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLV  198 (274)
T ss_dssp             HHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEB
T ss_pred             ccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEec
Confidence              22248999999999999998  789999999999999988777664

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.57  E-value=9.4e-14  Score=119.10  Aligned_cols=113  Identities=14%  Similarity=0.107  Sum_probs=91.3

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (319)
Q Consensus       154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (319)
                      ....+...+...++.+|||||||+|.++..+++.+  .+|+|+|+|+.+++.|+++++..+  ...++.++.+|+.+...
T Consensus        43 ~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~g--~~~~v~~~~~d~~~~~~  118 (204)
T 3njr_A           43 MRALTLAALAPRRGELLWDIGGGSGSVSVEWCLAG--GRAITIEPRADRIENIQKNIDTYG--LSPRMRAVQGTAPAALA  118 (204)
T ss_dssp             HHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEESCTTGGGT
T ss_pred             HHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcC--CCCCEEEEeCchhhhcc
Confidence            33455666777788999999999999999999884  499999999999999999987653  12389999999988332


Q ss_pred             CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      ...+||+|++..++    ++. +++++.++|||+|...+...
T Consensus       119 ~~~~~D~v~~~~~~----~~~-~l~~~~~~LkpgG~lv~~~~  155 (204)
T 3njr_A          119 DLPLPEAVFIGGGG----SQA-LYDRLWEWLAPGTRIVANAV  155 (204)
T ss_dssp             TSCCCSEEEECSCC----CHH-HHHHHHHHSCTTCEEEEEEC
T ss_pred             cCCCCCEEEECCcc----cHH-HHHHHHHhcCCCcEEEEEec
Confidence            34689999987754    566 89999999999987766555

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.57  E-value=2.6e-14  Score=120.73  Aligned_cols=104  Identities=15%  Similarity=0.101  Sum_probs=86.2

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC--CCCCCccEEE
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVH  242 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~V~  242 (319)
                      .++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.|+++++..+   ..+++++++|+.+++  +.+++||+|+
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~~~~~~~~fD~i~  118 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSRG-AASVLFVESDQRSAAVIARNIEALG---LSGATLRRGAVAAVVAAGTTSPVDLVL  118 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEECCHHHHHHHHHHHHHHT---CSCEEEEESCHHHHHHHCCSSCCSEEE
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHcC---CCceEEEEccHHHHHhhccCCCccEEE
Confidence            578899999999999999887764 3589999999999999999987753   358999999998764  3468999999


Q ss_pred             ecccccCC-CCHHHHHHHHHH--hhcCCCeeEE
Q 020988          243 AGAALHCW-PSPSNAASVFSS--SYSLLSICYL  272 (319)
Q Consensus       243 ~~~vl~h~-~d~~~~l~el~r--vlk~g~~~g~  272 (319)
                      +...+++. ++....++++.+  +|+|+|.+.+
T Consensus       119 ~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~  151 (189)
T 3p9n_A          119 ADPPYNVDSADVDAILAALGTNGWTREGTVAVV  151 (189)
T ss_dssp             ECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEE
T ss_pred             ECCCCCcchhhHHHHHHHHHhcCccCCCeEEEE
Confidence            99887775 567788888888  8888775544

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.56  E-value=3.8e-14  Score=119.10  Aligned_cols=117  Identities=12%  Similarity=0.139  Sum_probs=94.4

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCC--eEEEEcCCCCC
Q 020988          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSN--LALVRADVCRL  231 (319)
Q Consensus       154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~--i~~~~~d~~~l  231 (319)
                      ..+.+.+.+...++.+|||+|||+|.++..+++.+  .+++|+|+++.+++.+++++...+   ..+  +.++.+|+.+ 
T Consensus        40 ~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~~--~~v~~~D~~~~~~~~a~~~~~~~~---~~~~~~~~~~~d~~~-  113 (194)
T 1dus_A           40 GTKILVENVVVDKDDDILDLGCGYGVIGIALADEV--KSTTMADINRRAIKLAKENIKLNN---LDNYDIRVVHSDLYE-  113 (194)
T ss_dssp             HHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTT---CTTSCEEEEECSTTT-
T ss_pred             HHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHcC--CeEEEEECCHHHHHHHHHHHHHcC---CCccceEEEECchhc-
Confidence            44566667766688999999999999999999884  499999999999999999987642   334  9999999987 


Q ss_pred             CCCCCCccEEEecccccC-CCCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988          232 PFASGFVDAVHAGAALHC-WPSPSNAASVFSSSYSLLSICYLLQFR  276 (319)
Q Consensus       232 p~~~~~fD~V~~~~vl~h-~~d~~~~l~el~rvlk~g~~~g~~~~~  276 (319)
                      ++.+++||+|++..+++| ..+...+++++.++|+|+|...+....
T Consensus       114 ~~~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  159 (194)
T 1dus_A          114 NVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQT  159 (194)
T ss_dssp             TCTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred             ccccCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECC
Confidence            344679999999988887 345668889999998887766665554

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.56  E-value=5e-15  Score=129.61  Aligned_cols=105  Identities=10%  Similarity=0.115  Sum_probs=83.9

Q ss_pred             ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC--CCCCCCccEE
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAV  241 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD~V  241 (319)
                      ..++.+|||||||+|.++..+++.++ .+|+|+|+|+.|++.|+++....    ..++.++++|+.++  ++++++||+|
T Consensus        58 ~~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~fD~V  132 (236)
T 1zx0_A           58 SSKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQ----THKVIPLKGLWEDVAPTLPDGHFDGI  132 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGC----SSEEEEEESCHHHHGGGSCTTCEEEE
T ss_pred             CCCCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhc----CCCeEEEecCHHHhhcccCCCceEEE
Confidence            35678999999999999999977543 48999999999999999988664    35799999999888  8888999999


Q ss_pred             Ee-cccc--c--CCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988          242 HA-GAAL--H--CWPSPSNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       242 ~~-~~vl--~--h~~d~~~~l~el~rvlk~g~~~g~~  273 (319)
                      ++ .+++  +  |..+...+++++.|+|||+|.+.++
T Consensus       133 ~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~  169 (236)
T 1zx0_A          133 LYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  169 (236)
T ss_dssp             EECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             EECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEE
Confidence            99 5543  1  2223346789999999887765433

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.56  E-value=6.6e-15  Score=133.25  Aligned_cols=105  Identities=14%  Similarity=0.097  Sum_probs=84.5

Q ss_pred             CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCcc-----------------------------
Q 020988          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI-----------------------------  216 (319)
Q Consensus       166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~-----------------------------  216 (319)
                      ++.+|||||||+|.++..+++..+..+|+|+|+|+.+++.|++++...+..                             
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC  125 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence            678999999999999999999866679999999999999999986543100                             


Q ss_pred             --------------------------CCCCeEEEEcCCCCCC-----CCCCCccEEEecccccCCC------CHHHHHHH
Q 020988          217 --------------------------LTSNLALVRADVCRLP-----FASGFVDAVHAGAALHCWP------SPSNAASV  259 (319)
Q Consensus       217 --------------------------~~~~i~~~~~d~~~lp-----~~~~~fD~V~~~~vl~h~~------d~~~~l~e  259 (319)
                                                ...++.++++|+...+     +.+++||+|++..+++|+.      ++..++++
T Consensus       126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~  205 (292)
T 3g07_A          126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR  205 (292)
T ss_dssp             ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence                                      1158999999998654     5678999999999998875      66778888


Q ss_pred             HHHhhcCCCee
Q 020988          260 FSSSYSLLSIC  270 (319)
Q Consensus       260 l~rvlk~g~~~  270 (319)
                      +.++|+|||.+
T Consensus       206 ~~~~LkpGG~l  216 (292)
T 3g07_A          206 IYRHLRPGGIL  216 (292)
T ss_dssp             HHHHEEEEEEE
T ss_pred             HHHHhCCCcEE
Confidence            88888877543

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.56  E-value=4e-14  Score=121.29  Aligned_cols=108  Identities=17%  Similarity=0.097  Sum_probs=89.4

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (319)
Q Consensus       154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (319)
                      ....+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+|+.+++.|++++...+   ..+++++.+|+.+.+.
T Consensus        65 ~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~--~v~~vD~~~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~~  139 (210)
T 3lbf_A           65 MVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVQ--HVCSVERIKGLQWQARRRLKNLD---LHNVSTRHGDGWQGWQ  139 (210)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEEESCHHHHHHHHHHHHHTT---CCSEEEEESCGGGCCG
T ss_pred             HHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEecCHHHHHHHHHHHHHcC---CCceEEEECCcccCCc
Confidence            345566677778899999999999999999999865  99999999999999999987652   3579999999988766


Q ss_pred             CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEE
Q 020988          234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYL  272 (319)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~  272 (319)
                      .+++||+|++..+++|+++      ++.++|||+|...+
T Consensus       140 ~~~~~D~i~~~~~~~~~~~------~~~~~L~pgG~lv~  172 (210)
T 3lbf_A          140 ARAPFDAIIVTAAPPEIPT------ALMTQLDEGGILVL  172 (210)
T ss_dssp             GGCCEEEEEESSBCSSCCT------HHHHTEEEEEEEEE
T ss_pred             cCCCccEEEEccchhhhhH------HHHHhcccCcEEEE
Confidence            6789999999999999976      46677776654433

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.55  E-value=1.3e-14  Score=121.86  Aligned_cols=106  Identities=15%  Similarity=0.116  Sum_probs=83.5

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-CCCCCccEEEe
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDAVHA  243 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~V~~  243 (319)
                      .++.+|||+|||+|.++..+++.+.  +|+|+|+|+.+++.|+++++..+   ..++++++++...++ +.+++||+|++
T Consensus        21 ~~~~~vLDiGcG~G~~~~~la~~~~--~v~~vD~s~~~l~~a~~~~~~~~---~~~v~~~~~~~~~l~~~~~~~fD~v~~   95 (185)
T 3mti_A           21 DDESIVVDATMGNGNDTAFLAGLSK--KVYAFDVQEQALGKTSQRLSDLG---IENTELILDGHENLDHYVREPIRAAIF   95 (185)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHTTSS--EEEEEESCHHHHHHHHHHHHHHT---CCCEEEEESCGGGGGGTCCSCEEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcC---CCcEEEEeCcHHHHHhhccCCcCEEEE
Confidence            4688999999999999999998854  99999999999999999987753   368999998877753 44688999988


Q ss_pred             cc-cccC-------C-CCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          244 GA-ALHC-------W-PSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       244 ~~-vl~h-------~-~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      .. .+++       . .+...+++++.++|||||.+.+..+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  136 (185)
T 3mti_A           96 NLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIY  136 (185)
T ss_dssp             EEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             eCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEe
Confidence            73 3332       1 2334677899999999888877766

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.55  E-value=1.6e-14  Score=124.87  Aligned_cols=105  Identities=15%  Similarity=0.179  Sum_probs=87.8

Q ss_pred             HHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC--CCCCC
Q 020988          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR--LPFAS  235 (319)
Q Consensus       158 l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~--lp~~~  235 (319)
                      +.+.+. .++.+|||||||+|.++..+++.+  .+++|+|+|+.+++.++++.          ..++.+|+..  .++++
T Consensus        25 l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~--~~~~~~D~~~~~~~~~~~~~----------~~~~~~d~~~~~~~~~~   91 (230)
T 3cc8_A           25 LLKHIK-KEWKEVLDIGCSSGALGAAIKENG--TRVSGIEAFPEAAEQAKEKL----------DHVVLGDIETMDMPYEE   91 (230)
T ss_dssp             HHTTCC-TTCSEEEEETCTTSHHHHHHHTTT--CEEEEEESSHHHHHHHHTTS----------SEEEESCTTTCCCCSCT
T ss_pred             HHHHhc-cCCCcEEEeCCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHhC----------CcEEEcchhhcCCCCCC
Confidence            334444 578899999999999999999884  59999999999999998753          2688999876  66777


Q ss_pred             CCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          236 GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      ++||+|++.++++|++++..+++++.++++|+|...+...
T Consensus        92 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~  131 (230)
T 3cc8_A           92 EQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIP  131 (230)
T ss_dssp             TCEEEEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEEE
T ss_pred             CccCEEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEEeC
Confidence            8999999999999999999999999999888766555443

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.55  E-value=3.2e-14  Score=128.12  Aligned_cols=108  Identities=13%  Similarity=0.111  Sum_probs=89.7

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC-CCCCccEEEe
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-ASGFVDAVHA  243 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-~~~~fD~V~~  243 (319)
                      .++.+|||||||+|.++..+++.+ ..+|+|+|+|+.+++.|++++...+  ...++.++++|+.++++ .+++||+|++
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~~fD~v~~  139 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNMK--RRFKVFFRAQDSYGRHMDLGKEFDVISS  139 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHT-CSEEEEEESCHHHHHHHHHHHHTSC--CSSEEEEEESCTTTSCCCCSSCEEEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcC--CCccEEEEECCccccccCCCCCcCEEEE
Confidence            578899999999999999988875 4589999999999999999987642  12468999999999887 5789999999


Q ss_pred             cccccC----CCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          244 GAALHC----WPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       244 ~~vl~h----~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      ..+++|    ..++..+++++.++|||+|.+.+...
T Consensus       140 ~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  175 (298)
T 1ri5_A          140 QFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP  175 (298)
T ss_dssp             ESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            999977    45667888999999888776655544

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.55  E-value=5.7e-14  Score=122.37  Aligned_cols=100  Identities=19%  Similarity=0.268  Sum_probs=82.0

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEe-
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA-  243 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~-  243 (319)
                      .++.+|||||||+|.++..+++.++  +++|+|+|+.+++.++++.        .++.++.+|+.++++ +++||+|++ 
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~--------~~~~~~~~d~~~~~~-~~~~D~v~~~  107 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRL--------PDATLHQGDMRDFRL-GRKFSAVVSM  107 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHC--------TTCEEEECCTTTCCC-SSCEEEEEEC
T ss_pred             CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhC--------CCCEEEECCHHHccc-CCCCcEEEEc
Confidence            5678999999999999999999877  9999999999999999874        468999999999887 689999995 


Q ss_pred             cccccCCCCHH---HHHHHHHHhhcCCCeeEEEEeecc
Q 020988          244 GAALHCWPSPS---NAASVFSSSYSLLSICYLLQFRYT  278 (319)
Q Consensus       244 ~~vl~h~~d~~---~~l~el~rvlk~g~~~g~~~~~~~  278 (319)
                      ..+++|++++.   .+++++.++|+|   +|.+++...
T Consensus       108 ~~~~~~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~  142 (239)
T 3bxo_A          108 FSSVGYLKTTEELGAAVASFAEHLEP---GGVVVVEPW  142 (239)
T ss_dssp             TTGGGGCCSHHHHHHHHHHHHHTEEE---EEEEEECCC
T ss_pred             CchHhhcCCHHHHHHHHHHHHHhcCC---CeEEEEEec
Confidence            55999997654   556666666555   556666443

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.55  E-value=2e-14  Score=130.85  Aligned_cols=109  Identities=11%  Similarity=0.088  Sum_probs=81.6

Q ss_pred             CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccC---CCCeEEEEcCC------CCC--CCC
Q 020988          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTIL---TSNLALVRADV------CRL--PFA  234 (319)
Q Consensus       166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~---~~~i~~~~~d~------~~l--p~~  234 (319)
                      ++.+|||||||+|..+..++..+ ..+|+|+|+|+.|++.|+++....+...   ..++++.+.|+      .++  +++
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~-~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~  126 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGE-IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY  126 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred             CCCeEEEEecCCcHhHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence            57899999999998766555543 2489999999999999999886542000   00267888887      322  345


Q ss_pred             CCCccEEEecccccCC---CCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          235 SGFVDAVHAGAALHCW---PSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       235 ~~~fD~V~~~~vl~h~---~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      +++||+|+|..++||+   .+...+++++.++|||||.+.....
T Consensus       127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~  170 (302)
T 2vdw_A          127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTM  170 (302)
T ss_dssp             SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            6899999999999875   4567889999999999887654444

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.54  E-value=5.3e-14  Score=121.59  Aligned_cols=94  Identities=14%  Similarity=0.116  Sum_probs=83.5

Q ss_pred             CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecc
Q 020988          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (319)
Q Consensus       166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (319)
                      ++.+|||||||+|.++..+++.      +|+|+|+.+++.++++          ++.++.+|+..+++++++||+|++..
T Consensus        47 ~~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~----------~~~~~~~d~~~~~~~~~~fD~v~~~~  110 (219)
T 1vlm_A           47 PEGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR----------GVFVLKGTAENLPLKDESFDFALMVT  110 (219)
T ss_dssp             CSSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT----------TCEEEECBTTBCCSCTTCEEEEEEES
T ss_pred             CCCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc----------CCEEEEcccccCCCCCCCeeEEEEcc
Confidence            3789999999999999888653      9999999999999874          67899999999998888999999999


Q ss_pred             cccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          246 ALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       246 vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      +++|++++..+++++.++|+|+|...+..+
T Consensus       111 ~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~  140 (219)
T 1vlm_A          111 TICFVDDPERALKEAYRILKKGGYLIVGIV  140 (219)
T ss_dssp             CGGGSSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hHhhccCHHHHHHHHHHHcCCCcEEEEEEe
Confidence            999999999999999999998876665544

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.54  E-value=1.1e-13  Score=119.32  Aligned_cols=107  Identities=17%  Similarity=0.187  Sum_probs=89.0

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC--CCCCCccEEE
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVH  242 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~V~  242 (319)
                      .++.+|||||||+|.++..+++..+..+++|+|+|+.+++.|++++...+   ..++.++++|+.+++  +++++||+|+
T Consensus        40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~---~~~v~~~~~d~~~~~~~~~~~~~D~i~  116 (214)
T 1yzh_A           40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVG---VPNIKLLWVDGSDLTDYFEDGEIDRLY  116 (214)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHC---CSSEEEEECCSSCGGGTSCTTCCSEEE
T ss_pred             CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcC---CCCEEEEeCCHHHHHhhcCCCCCCEEE
Confidence            45789999999999999999999877799999999999999999987653   368999999999877  7778999999


Q ss_pred             ecccccCCC--------CHHHHHHHHHHhhcCCCeeEEEE
Q 020988          243 AGAALHCWP--------SPSNAASVFSSSYSLLSICYLLQ  274 (319)
Q Consensus       243 ~~~vl~h~~--------d~~~~l~el~rvlk~g~~~g~~~  274 (319)
                      +.....+..        ....+++++.++|+|+|.+.+..
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  156 (214)
T 1yzh_A          117 LNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT  156 (214)
T ss_dssp             EESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred             EECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence            986544332        12578999999999998765543

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.54  E-value=1.1e-14  Score=129.83  Aligned_cols=110  Identities=17%  Similarity=0.200  Sum_probs=80.5

Q ss_pred             hccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccC-------------------------
Q 020988          163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTIL-------------------------  217 (319)
Q Consensus       163 ~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~-------------------------  217 (319)
                      ...++.+|||||||+|.++..++..+. .+|+|+|+|+.|++.|+++++......                         
T Consensus        52 ~~~~g~~vLDiGCG~G~~~~~~~~~~~-~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~  130 (263)
T 2a14_A           52 GGLQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK  130 (263)
T ss_dssp             TSCCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred             CCCCCceEEEeCCCccHHHHHHHHhhh-cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHH
Confidence            345778999999999988777666653 379999999999999998765421000                         


Q ss_pred             -CCCeE-EEEcCCCCC-CC---CCCCccEEEecccccCC-CC---HHHHHHHHHHhhcCCCeeEEE
Q 020988          218 -TSNLA-LVRADVCRL-PF---ASGFVDAVHAGAALHCW-PS---PSNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       218 -~~~i~-~~~~d~~~l-p~---~~~~fD~V~~~~vl~h~-~d---~~~~l~el~rvlk~g~~~g~~  273 (319)
                       ..++. ++++|+.+. |+   ..++||+|+++.+|||+ ++   ...+++++.++|||||.+.+.
T Consensus       131 ~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~  196 (263)
T 2a14_A          131 LRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTT  196 (263)
T ss_dssp             HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             HHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence             01233 889999873 43   25799999999999995 33   456777888887777665544

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.54  E-value=4.7e-14  Score=123.23  Aligned_cols=102  Identities=18%  Similarity=0.199  Sum_probs=84.9

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (319)
                      .++.+|||||||+|.++..+++. .  +++|+|+|+.+++.|+++....    ..++.++.+|+.+++++ ++||+|++.
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~-~--~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~~~-~~fD~v~~~  103 (243)
T 3d2l_A           32 EPGKRIADIGCGTGTATLLLADH-Y--EVTGVDLSEEMLEIAQEKAMET----NRHVDFWVQDMRELELP-EPVDAITIL  103 (243)
T ss_dssp             CTTCEEEEESCTTCHHHHHHTTT-S--EEEEEESCHHHHHHHHHHHHHT----TCCCEEEECCGGGCCCS-SCEEEEEEC
T ss_pred             CCCCeEEEecCCCCHHHHHHhhC-C--eEEEEECCHHHHHHHHHhhhhc----CCceEEEEcChhhcCCC-CCcCEEEEe
Confidence            34689999999999999999887 4  9999999999999999988764    35789999999988876 799999998


Q ss_pred             c-cccCCCC---HHHHHHHHHHhhcCCCeeEEEE
Q 020988          245 A-ALHCWPS---PSNAASVFSSSYSLLSICYLLQ  274 (319)
Q Consensus       245 ~-vl~h~~d---~~~~l~el~rvlk~g~~~g~~~  274 (319)
                      . +++|+.+   +..+++++.++|+|+|...+-+
T Consensus       104 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  137 (243)
T 3d2l_A          104 CDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDV  137 (243)
T ss_dssp             TTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence            6 9999954   4567888888888776554433

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.53  E-value=7.2e-14  Score=117.46  Aligned_cols=100  Identities=13%  Similarity=0.172  Sum_probs=85.4

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (319)
                      .++.+|||||||+|.++..+++.+.  +++|+|+|+.+++.++++.        .++.++.+|+.++++++++||+|++.
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~~~~~~~~a~~~~--------~~~~~~~~d~~~~~~~~~~~D~i~~~  114 (195)
T 3cgg_A           45 PRGAKILDAGCGQGRIGGYLSKQGH--DVLGTDLDPILIDYAKQDF--------PEARWVVGDLSVDQISETDFDLIVSA  114 (195)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHC--------TTSEEEECCTTTSCCCCCCEEEEEEC
T ss_pred             cCCCeEEEECCCCCHHHHHHHHCCC--cEEEEcCCHHHHHHHHHhC--------CCCcEEEcccccCCCCCCceeEEEEC
Confidence            4688999999999999999999865  9999999999999999874        46899999999988888899999998


Q ss_pred             -ccccCCCC--HHHHHHHHHHhhcCCCeeEEEE
Q 020988          245 -AALHCWPS--PSNAASVFSSSYSLLSICYLLQ  274 (319)
Q Consensus       245 -~vl~h~~d--~~~~l~el~rvlk~g~~~g~~~  274 (319)
                       .+++|+..  ...+++++.++++|+|...+..
T Consensus       115 ~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~  147 (195)
T 3cgg_A          115 GNVMGFLAEDGREPALANIHRALGADGRAVIGF  147 (195)
T ss_dssp             CCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEe
Confidence             78999843  3678889999988876554433

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.53  E-value=2.1e-14  Score=123.84  Aligned_cols=108  Identities=16%  Similarity=0.126  Sum_probs=88.7

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC---C
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL---P  232 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l---p  232 (319)
                      ..+...+...++.+|||||||+|.++..+++.+.  +|+|+|+|+.+++.++++         .++.+..+|+.++   +
T Consensus        42 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~---------~~~~~~~~~~~~~~~~~  110 (227)
T 3e8s_A           42 QAILLAILGRQPERVLDLGCGEGWLLRALADRGI--EAVGVDGDRTLVDAARAA---------GAGEVHLASYAQLAEAK  110 (227)
T ss_dssp             HHHHHHHHHTCCSEEEEETCTTCHHHHHHHTTTC--EEEEEESCHHHHHHHHHT---------CSSCEEECCHHHHHTTC
T ss_pred             HHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHCCC--EEEEEcCCHHHHHHHHHh---------cccccchhhHHhhcccc
Confidence            3445555566779999999999999999999866  999999999999999986         3567888887766   4


Q ss_pred             CC-CCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          233 FA-SGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       233 ~~-~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      +. +++||+|++.++++ ..++..+++++.++|||+|.+.+..+
T Consensus       111 ~~~~~~fD~v~~~~~l~-~~~~~~~l~~~~~~L~pgG~l~~~~~  153 (227)
T 3e8s_A          111 VPVGKDYDLICANFALL-HQDIIELLSAMRTLLVPGGALVIQTL  153 (227)
T ss_dssp             SCCCCCEEEEEEESCCC-SSCCHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             cccCCCccEEEECchhh-hhhHHHHHHHHHHHhCCCeEEEEEec
Confidence            44 44599999999999 78999999999999988776665554

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.53  E-value=6.8e-14  Score=120.77  Aligned_cols=107  Identities=15%  Similarity=0.165  Sum_probs=88.5

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC--CCCCCccEEE
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVH  242 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~V~  242 (319)
                      .++.+|||||||+|.++..+++..+..+++|+|+|+.+++.|++++...+   ..++.++++|+..++  +++++||.|+
T Consensus        37 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~---~~nv~~~~~d~~~l~~~~~~~~~d~v~  113 (213)
T 2fca_A           37 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSE---AQNVKLLNIDADTLTDVFEPGEVKRVY  113 (213)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSC---CSSEEEECCCGGGHHHHCCTTSCCEEE
T ss_pred             CCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcC---CCCEEEEeCCHHHHHhhcCcCCcCEEE
Confidence            45789999999999999999998777899999999999999999987652   458999999998876  6778999998


Q ss_pred             ecccccCCCC--------HHHHHHHHHHhhcCCCeeEEEE
Q 020988          243 AGAALHCWPS--------PSNAASVFSSSYSLLSICYLLQ  274 (319)
Q Consensus       243 ~~~vl~h~~d--------~~~~l~el~rvlk~g~~~g~~~  274 (319)
                      +.+...+...        ...+++++.++|||+|.+.+..
T Consensus       114 ~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t  153 (213)
T 2fca_A          114 LNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT  153 (213)
T ss_dssp             EESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred             EECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence            8654333221        2578999999999999777654

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.53  E-value=6.4e-14  Score=124.55  Aligned_cols=107  Identities=14%  Similarity=0.119  Sum_probs=84.0

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC--
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF--  233 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~--  233 (319)
                      +.+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|+++....         ++..++.+++.  
T Consensus        35 ~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g~--~V~gvD~S~~ml~~Ar~~~~~~---------~v~~~~~~~~~~~  103 (261)
T 3iv6_A           35 ENDIFLENIVPGSTVAVIGASTRFLIEKALERGA--SVTVFDFSQRMCDDLAEALADR---------CVTIDLLDITAEI  103 (261)
T ss_dssp             HHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTSSS---------CCEEEECCTTSCC
T ss_pred             HHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHhc---------cceeeeeeccccc
Confidence            4555666777889999999999999999999876  9999999999999999987542         22333333322  


Q ss_pred             ---CCCCccEEEecccccCCCC--HHHHHHHHHHhhcCCCeeEEEE
Q 020988          234 ---ASGFVDAVHAGAALHCWPS--PSNAASVFSSSYSLLSICYLLQ  274 (319)
Q Consensus       234 ---~~~~fD~V~~~~vl~h~~d--~~~~l~el~rvlk~g~~~g~~~  274 (319)
                         .+++||+|++..+++|+..  ...+++++.+++ |||...+-.
T Consensus       104 ~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~  148 (261)
T 3iv6_A          104 PKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASV  148 (261)
T ss_dssp             CGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEE
T ss_pred             ccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEe
Confidence               2578999999999999864  346889999999 988776544

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.52  E-value=1.2e-14  Score=130.98  Aligned_cols=117  Identities=17%  Similarity=0.195  Sum_probs=84.4

Q ss_pred             HHHHHHhhc--cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCcc-------------CC--
Q 020988          156 KMAQEYFKS--AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI-------------LT--  218 (319)
Q Consensus       156 ~~l~~~l~~--~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~-------------~~--  218 (319)
                      +.+.+.+..  .++.+|||||||+|.+...++.. ...+|+|+|+|+.|++.|+++++.....             ..  
T Consensus        59 ~~l~~~l~~~~~~~~~vLDiGcG~G~~~~l~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~  137 (289)
T 2g72_A           59 RCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACS-HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKG  137 (289)
T ss_dssp             HHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGG-GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSC
T ss_pred             HHHHHHhCCCCCCCCeEEEECCCcChHHHHhhcc-CCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcc
Confidence            344455533  36789999999999965444332 2349999999999999999876431000             00  


Q ss_pred             ------------CCeEEEEcCCCC-CCC-----CCCCccEEEecccccC----CCCHHHHHHHHHHhhcCCCeeEEE
Q 020988          219 ------------SNLALVRADVCR-LPF-----ASGFVDAVHAGAALHC----WPSPSNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       219 ------------~~i~~~~~d~~~-lp~-----~~~~fD~V~~~~vl~h----~~d~~~~l~el~rvlk~g~~~g~~  273 (319)
                                  ..+.++.+|+.. +|+     ++++||+|+++.+++|    ++++..+++++.++|||||.+.+.
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~  214 (289)
T 2g72_A          138 ECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLI  214 (289)
T ss_dssp             CCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             cchhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence                        015677789987 664     3467999999999999    667889999999999998876654

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.52  E-value=3.7e-14  Score=123.00  Aligned_cols=107  Identities=12%  Similarity=0.114  Sum_probs=86.8

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-C--CCCCCccEE
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P--FASGFVDAV  241 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p--~~~~~fD~V  241 (319)
                      .++.+|||||||+|.++..+++..+..+|+|+|+|+.+++.|++++...   ...++.++++|+.++ +  +++++||.|
T Consensus        33 ~~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~---~l~nv~~~~~Da~~~l~~~~~~~~~d~v  109 (218)
T 3dxy_A           33 REAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEE---GLSNLRVMCHDAVEVLHKMIPDNSLRMV  109 (218)
T ss_dssp             SCCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHT---TCSSEEEECSCHHHHHHHHSCTTCEEEE
T ss_pred             CCCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHh---CCCcEEEEECCHHHHHHHHcCCCChheE
Confidence            3678999999999999999999988788999999999999999998765   246899999998874 3  678999999


Q ss_pred             EecccccCCCCH--------HHHHHHHHHhhcCCCeeEEEE
Q 020988          242 HAGAALHCWPSP--------SNAASVFSSSYSLLSICYLLQ  274 (319)
Q Consensus       242 ~~~~vl~h~~d~--------~~~l~el~rvlk~g~~~g~~~  274 (319)
                      ++.+...+....        ..+++++.++|||||.+.+..
T Consensus       110 ~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t  150 (218)
T 3dxy_A          110 QLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMAT  150 (218)
T ss_dssp             EEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe
Confidence            997544332221        248999999999987765543

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.52  E-value=2.4e-14  Score=123.46  Aligned_cols=111  Identities=21%  Similarity=0.182  Sum_probs=85.5

Q ss_pred             HhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhc-CccCCCCeEEEEcCCCCCCCCCCCcc
Q 020988          161 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVRADVCRLPFASGFVD  239 (319)
Q Consensus       161 ~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~i~~~~~d~~~lp~~~~~fD  239 (319)
                      .+...++.+|||||||+|.++..+++.++..+|+|+|+|+.|++.+.++..+. ......++.++++|+.++|+.+++ |
T Consensus        22 ~l~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d  100 (218)
T 3mq2_A           22 QLRSQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-G  100 (218)
T ss_dssp             HHHTTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-E
T ss_pred             HhhccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-C
Confidence            44456788999999999999999999977779999999999888644333211 011245899999999999987666 7


Q ss_pred             EEEe---cccc--cCCCCHHHHHHHHHHhhcCCCeeEE
Q 020988          240 AVHA---GAAL--HCWPSPSNAASVFSSSYSLLSICYL  272 (319)
Q Consensus       240 ~V~~---~~vl--~h~~d~~~~l~el~rvlk~g~~~g~  272 (319)
                      .|..   +..+  +|++++..+++++.++|||+|.+.+
T Consensus       101 ~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~  138 (218)
T 3mq2_A          101 ELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLV  138 (218)
T ss_dssp             EEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEE
T ss_pred             EEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEE
Confidence            6663   3334  3888889999999999998876554

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.51  E-value=1.2e-13  Score=127.67  Aligned_cols=112  Identities=21%  Similarity=0.269  Sum_probs=92.6

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (319)
                      +.+.+.+...++.+|||||||+|.++..+++.+ ..+|+|+|+|+ +++.|+++++..+  ...+++++.+|+.++++++
T Consensus        54 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~v~gvD~s~-~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~~~~  129 (340)
T 2fyt_A           54 DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAG-AKKVLGVDQSE-ILYQAMDIIRLNK--LEDTITLIKGKIEEVHLPV  129 (340)
T ss_dssp             HHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTT-CSEEEEEESST-HHHHHHHHHHHTT--CTTTEEEEESCTTTSCCSC
T ss_pred             HHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcC-CCEEEEEChHH-HHHHHHHHHHHcC--CCCcEEEEEeeHHHhcCCC
Confidence            344455556778999999999999999999885 35899999997 9999999887653  2368999999999998888


Q ss_pred             CCccEEEecc---cccCCCCHHHHHHHHHHhhcCCCeeE
Q 020988          236 GFVDAVHAGA---ALHCWPSPSNAASVFSSSYSLLSICY  271 (319)
Q Consensus       236 ~~fD~V~~~~---vl~h~~d~~~~l~el~rvlk~g~~~g  271 (319)
                      ++||+|++..   .+.|..++..+++++.++|||+|...
T Consensus       130 ~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          130 EKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             SCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             CcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence            8999999866   57777777889999999999887553

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.51  E-value=8.2e-14  Score=122.28  Aligned_cols=101  Identities=14%  Similarity=-0.002  Sum_probs=85.0

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC---CCCccEE
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA---SGFVDAV  241 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~---~~~fD~V  241 (319)
                      .++.+|||||||+|.++..++...+..+|+|+|+|+.+++.|+++....+   ..+++++++|+.++++.   +++||+|
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~~~~~~~~~fD~V  145 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQ---LENTTFCHDRAETFGQRKDVRESYDIV  145 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHT---CSSEEEEESCHHHHTTCTTTTTCEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCCEEEEeccHHHhcccccccCCccEE
Confidence            46789999999999999999876666799999999999999999887653   34799999999887753   5799999


Q ss_pred             EecccccCCCCHHHHHHHHHHhhcCCCeeEE
Q 020988          242 HAGAALHCWPSPSNAASVFSSSYSLLSICYL  272 (319)
Q Consensus       242 ~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~  272 (319)
                      ++..    +.++..+++++.++|+|+|.+.+
T Consensus       146 ~~~~----~~~~~~~l~~~~~~LkpgG~l~~  172 (240)
T 1xdz_A          146 TARA----VARLSVLSELCLPLVKKNGLFVA  172 (240)
T ss_dssp             EEEC----CSCHHHHHHHHGGGEEEEEEEEE
T ss_pred             EEec----cCCHHHHHHHHHHhcCCCCEEEE
Confidence            9976    46788999999999888876644

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.51  E-value=2.2e-13  Score=126.98  Aligned_cols=107  Identities=16%  Similarity=0.180  Sum_probs=91.4

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC--CCCCCCccEEE
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAVH  242 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD~V~  242 (319)
                      ....+|||||||+|.++..+++..+..+++++|+ +.+++.|++++...+  ...+++++.+|+.+.  |++ ++||+|+
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~p-~~~D~v~  253 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLS--GSERIHGHGANLLDRDVPFP-TGFDAVW  253 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCT--TGGGEEEEECCCCSSSCCCC-CCCSEEE
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcC--cccceEEEEccccccCCCCC-CCcCEEE
Confidence            4678999999999999999999988889999999 999999999886542  225799999999885  565 7899999


Q ss_pred             ecccccCCCCHH--HHHHHHHHhhcCCCeeEEEEe
Q 020988          243 AGAALHCWPSPS--NAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       243 ~~~vl~h~~d~~--~~l~el~rvlk~g~~~g~~~~  275 (319)
                      +..++||++++.  ..+++++++|||+|...+...
T Consensus       254 ~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (363)
T 3dp7_A          254 MSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMET  288 (363)
T ss_dssp             EESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             EechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEee
Confidence            999999998764  679999999999987665543

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.51  E-value=1.8e-13  Score=124.78  Aligned_cols=109  Identities=16%  Similarity=0.112  Sum_probs=84.8

Q ss_pred             CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCc----cCCCCeEEEEcCCCCCC----CC--C
Q 020988          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT----ILTSNLALVRADVCRLP----FA--S  235 (319)
Q Consensus       166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~----~~~~~i~~~~~d~~~lp----~~--~  235 (319)
                      ++.+|||||||+|.++..+++. +..+++|+|+|+.+++.|+++....+.    ....++.++++|+..++    ++  +
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~  112 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ  112 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred             CCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence            6789999999999999998875 346999999999999999998764210    01247899999999876    53  4


Q ss_pred             CCccEEEecccccCC-CC---HHHHHHHHHHhhcCCCeeEEEEe
Q 020988          236 GFVDAVHAGAALHCW-PS---PSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       236 ~~fD~V~~~~vl~h~-~d---~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      ++||+|++..++||+ .+   +..+++++.++|||+|.+.+..+
T Consensus       113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  156 (313)
T 3bgv_A          113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTP  156 (313)
T ss_dssp             CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence            599999999999988 44   45778888888877765554444

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.50  E-value=3.5e-13  Score=118.61  Aligned_cols=101  Identities=22%  Similarity=0.315  Sum_probs=83.0

Q ss_pred             ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (319)
                      ..++.+|||+|||+|.++..+++.+.  +|+|+|+|+.+++.|+++....    ..++.++++|+.+++++ ++||+|++
T Consensus        39 ~~~~~~vLDlGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~----~~~v~~~~~d~~~~~~~-~~fD~v~~  111 (252)
T 1wzn_A           39 KREVRRVLDLACGTGIPTLELAERGY--EVVGLDLHEEMLRVARRKAKER----NLKIEFLQGDVLEIAFK-NEFDAVTM  111 (252)
T ss_dssp             SSCCCEEEEETCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCCEEEESCGGGCCCC-SCEEEEEE
T ss_pred             ccCCCEEEEeCCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHhc----CCceEEEECChhhcccC-CCccEEEE
Confidence            35678999999999999999999866  9999999999999999988764    24789999999988865 68999998


Q ss_pred             cc-cccCCC--CHHHHHHHHHHhhcCCCeeE
Q 020988          244 GA-ALHCWP--SPSNAASVFSSSYSLLSICY  271 (319)
Q Consensus       244 ~~-vl~h~~--d~~~~l~el~rvlk~g~~~g  271 (319)
                      .. +++|+.  +...+++++.++|+|+|.+.
T Consensus       112 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li  142 (252)
T 1wzn_A          112 FFSTIMYFDEEDLRKLFSKVAEALKPGGVFI  142 (252)
T ss_dssp             CSSGGGGSCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             cCCchhcCCHHHHHHHHHHHHHHcCCCeEEE
Confidence            74 555553  34577888888888876543

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.50  E-value=2.4e-13  Score=126.35  Aligned_cols=115  Identities=13%  Similarity=0.075  Sum_probs=96.0

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (319)
                      +.+.+.+...++.+|||||||+|.++..+++..+..+++++|+ +.+++.|++++...+  ...+++++.+|+.+.++++
T Consensus       180 ~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~  256 (359)
T 1x19_A          180 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKG--VADRMRGIAVDIYKESYPE  256 (359)
T ss_dssp             HHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTT--CTTTEEEEECCTTTSCCCC
T ss_pred             HHHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcC--CCCCEEEEeCccccCCCCC
Confidence            3444555556788999999999999999999988789999999 999999999887642  2346999999999887764


Q ss_pred             CCccEEEecccccCCCC--HHHHHHHHHHhhcCCCeeEEEEe
Q 020988          236 GFVDAVHAGAALHCWPS--PSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       236 ~~fD~V~~~~vl~h~~d--~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                        +|+|++..++||+++  ...+++++.+++||+|...+..+
T Consensus       257 --~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~  296 (359)
T 1x19_A          257 --ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM  296 (359)
T ss_dssp             --CSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEE
T ss_pred             --CCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence              399999999999988  67889999999999987766554

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.50  E-value=2.2e-14  Score=126.93  Aligned_cols=109  Identities=15%  Similarity=0.246  Sum_probs=86.1

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCcc--------------C------------C
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI--------------L------------T  218 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~--------------~------------~  218 (319)
                      .++.+|||||||+|.++..+++.+. .+|+|+|+|+.+++.+++++...+..              .            .
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  133 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR  133 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence            5678999999999999998888764 58999999999999999987542100              0            0


Q ss_pred             CCe-EEEEcCCCCCC-CCC---CCccEEEeccccc----CCCCHHHHHHHHHHhhcCCCeeEEEE
Q 020988          219 SNL-ALVRADVCRLP-FAS---GFVDAVHAGAALH----CWPSPSNAASVFSSSYSLLSICYLLQ  274 (319)
Q Consensus       219 ~~i-~~~~~d~~~lp-~~~---~~fD~V~~~~vl~----h~~d~~~~l~el~rvlk~g~~~g~~~  274 (319)
                      .++ .++++|+.+.+ +.+   ++||+|++..+++    |++++..+++++.++|||||.+.+..
T Consensus       134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  198 (265)
T 2i62_A          134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVD  198 (265)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Confidence            027 89999998864 355   7999999999999    66677888999999988877665544

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.50  E-value=3.5e-13  Score=125.87  Aligned_cols=113  Identities=11%  Similarity=0.102  Sum_probs=94.9

Q ss_pred             HHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCC
Q 020988          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF  237 (319)
Q Consensus       158 l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~  237 (319)
                      +.+.+...++.+|||||||+|.++..+++..+..+++++|+ +.+++.|++++...+  ...+++++.+|+. .+++. .
T Consensus       194 l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~--l~~~v~~~~~d~~-~~~p~-~  268 (369)
T 3gwz_A          194 VAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRG--LADRCEILPGDFF-ETIPD-G  268 (369)
T ss_dssp             HHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT--CTTTEEEEECCTT-TCCCS-S
T ss_pred             HHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcC--cCCceEEeccCCC-CCCCC-C
Confidence            33444445678999999999999999999988889999999 999999999887642  2468999999998 45555 8


Q ss_pred             ccEEEecccccCCCCHH--HHHHHHHHhhcCCCeeEEEEe
Q 020988          238 VDAVHAGAALHCWPSPS--NAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       238 fD~V~~~~vl~h~~d~~--~~l~el~rvlk~g~~~g~~~~  275 (319)
                      ||+|++.+++||++++.  +.+++++++|+|+|...+..+
T Consensus       269 ~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~  308 (369)
T 3gwz_A          269 ADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDN  308 (369)
T ss_dssp             CSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEE
T ss_pred             ceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence            99999999999998876  689999999999987766554

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.50  E-value=1.7e-13  Score=118.13  Aligned_cols=104  Identities=10%  Similarity=0.045  Sum_probs=80.2

Q ss_pred             hccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC----CCCCCCc
Q 020988          163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PFASGFV  238 (319)
Q Consensus       163 ~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l----p~~~~~f  238 (319)
                      ...++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.+.+..+..     .++.++.+|+...    ++. ++|
T Consensus        54 ~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~-----~~v~~~~~d~~~~~~~~~~~-~~f  127 (210)
T 1nt2_A           54 KLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER-----NNIIPLLFDASKPWKYSGIV-EKV  127 (210)
T ss_dssp             CCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC-----SSEEEECSCTTCGGGTTTTC-CCE
T ss_pred             CCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC-----CCeEEEEcCCCCchhhcccc-cce
Confidence            345788999999999999999998764559999999999887766655442     4788999998773    444 799


Q ss_pred             cEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEE
Q 020988          239 DAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQ  274 (319)
Q Consensus       239 D~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~  274 (319)
                      |+|++. +.++ .+...+++++.++|||||.+.+.+
T Consensus       128 D~V~~~-~~~~-~~~~~~l~~~~r~LkpgG~l~i~~  161 (210)
T 1nt2_A          128 DLIYQD-IAQK-NQIEILKANAEFFLKEKGEVVIMV  161 (210)
T ss_dssp             EEEEEC-CCST-THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEEe-ccCh-hHHHHHHHHHHHHhCCCCEEEEEE
Confidence            999987 2222 233345899999999988777664

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.50  E-value=1.6e-13  Score=127.38  Aligned_cols=104  Identities=14%  Similarity=0.194  Sum_probs=87.5

Q ss_pred             hccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEE
Q 020988          163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH  242 (319)
Q Consensus       163 ~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~  242 (319)
                      ...++.+|||||||+|.++..+++.+ ..+|+|+|+| .+++.|+++++..+  ...+++++.+|+.++++++++||+|+
T Consensus        63 ~~~~~~~VLDvGcG~G~~~~~la~~g-~~~v~gvD~s-~~l~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~fD~Ii  138 (349)
T 3q7e_A           63 HLFKDKVVLDVGSGTGILCMFAAKAG-ARKVIGIECS-SISDYAVKIVKANK--LDHVVTIIKGKVEEVELPVEKVDIII  138 (349)
T ss_dssp             HHHTTCEEEEESCTTSHHHHHHHHTT-CSEEEEEECS-THHHHHHHHHHHTT--CTTTEEEEESCTTTCCCSSSCEEEEE
T ss_pred             ccCCCCEEEEEeccchHHHHHHHHCC-CCEEEEECcH-HHHHHHHHHHHHcC--CCCcEEEEECcHHHccCCCCceEEEE
Confidence            34578999999999999999999984 4699999999 49999999987753  23459999999999998889999999


Q ss_pred             eccc---ccCCCCHHHHHHHHHHhhcCCCee
Q 020988          243 AGAA---LHCWPSPSNAASVFSSSYSLLSIC  270 (319)
Q Consensus       243 ~~~v---l~h~~d~~~~l~el~rvlk~g~~~  270 (319)
                      +..+   +.+..++..+++++.++|||+|..
T Consensus       139 s~~~~~~l~~~~~~~~~l~~~~r~LkpgG~l  169 (349)
T 3q7e_A          139 SEWMGYCLFYESMLNTVLHARDKWLAPDGLI  169 (349)
T ss_dssp             ECCCBBTBTBTCCHHHHHHHHHHHEEEEEEE
T ss_pred             EccccccccCchhHHHHHHHHHHhCCCCCEE
Confidence            9654   555578889999999999887654

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.49  E-value=1.3e-13  Score=120.99  Aligned_cols=109  Identities=14%  Similarity=0.160  Sum_probs=82.7

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhc---CccCCCCeEEEEcCCCC-CC--CCCCCc
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD---NTILTSNLALVRADVCR-LP--FASGFV  238 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~---~~~~~~~i~~~~~d~~~-lp--~~~~~f  238 (319)
                      .++.+|||||||+|.++..+++..+...|+|+|+|+.+++.|++++...   ......++.++++|+.. ++  +++++|
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~  124 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL  124 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence            4567999999999999999999887789999999999999999876531   00124689999999987 66  778999


Q ss_pred             cEEEecccccCCCC--------HHHHHHHHHHhhcCCCeeEEE
Q 020988          239 DAVHAGAALHCWPS--------PSNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       239 D~V~~~~vl~h~~d--------~~~~l~el~rvlk~g~~~g~~  273 (319)
                      |.|++...-.|...        ...+++++.++|||||.+.+.
T Consensus       125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~  167 (235)
T 3ckk_A          125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTI  167 (235)
T ss_dssp             EEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEE
Confidence            99987543322211        136889999999888766544

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.49  E-value=1.6e-13  Score=126.18  Aligned_cols=106  Identities=16%  Similarity=0.141  Sum_probs=91.1

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (319)
                      .+..+|||||||+|.++..+++..+..+++++|+ +.+++.|++++...+  ...+++++.+|+. .+++. +||+|++.
T Consensus       168 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~--~~~~v~~~~~d~~-~~~p~-~~D~v~~~  242 (332)
T 3i53_A          168 AALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTG--LSGRAQVVVGSFF-DPLPA-GAGGYVLS  242 (332)
T ss_dssp             GGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT--CTTTEEEEECCTT-SCCCC-SCSEEEEE
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcC--cCcCeEEecCCCC-CCCCC-CCcEEEEe
Confidence            3468999999999999999999988889999999 999999999887642  2368999999997 45554 89999999


Q ss_pred             ccccCCCCH--HHHHHHHHHhhcCCCeeEEEEe
Q 020988          245 AALHCWPSP--SNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       245 ~vl~h~~d~--~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      +++||++++  .+.+++++++|+|||...+..+
T Consensus       243 ~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  275 (332)
T 3i53_A          243 AVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEA  275 (332)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred             hhhccCCHHHHHHHHHHHHHhcCCCCEEEEEee
Confidence            999999986  6889999999999987766544

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.49  E-value=3.3e-13  Score=112.33  Aligned_cols=110  Identities=14%  Similarity=0.176  Sum_probs=90.0

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (319)
Q Consensus       154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (319)
                      ..+.+.+.+...++.+|||+|||+|.++..+++  +..+++|+|+|+.+++.+++++...+   ..+++++.+|+.+ ++
T Consensus        23 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~~~~~~d~~~-~~   96 (183)
T 2yxd_A           23 IRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFN---IKNCQIIKGRAED-VL   96 (183)
T ss_dssp             HHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTT---CCSEEEEESCHHH-HG
T ss_pred             HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcC---CCcEEEEECCccc-cc
Confidence            345666667667889999999999999999988  44599999999999999999987753   3579999999887 66


Q ss_pred             CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      ++++||+|++..+    .+....++++.++  ++|...+...
T Consensus        97 ~~~~~D~i~~~~~----~~~~~~l~~~~~~--~gG~l~~~~~  132 (183)
T 2yxd_A           97 DKLEFNKAFIGGT----KNIEKIIEILDKK--KINHIVANTI  132 (183)
T ss_dssp             GGCCCSEEEECSC----SCHHHHHHHHHHT--TCCEEEEEES
T ss_pred             cCCCCcEEEECCc----ccHHHHHHHHhhC--CCCEEEEEec
Confidence            6689999999988    5778889999888  6665554443

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.49  E-value=2.2e-13  Score=127.16  Aligned_cols=114  Identities=11%  Similarity=0.118  Sum_probs=92.7

Q ss_pred             HHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCC
Q 020988          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (319)
Q Consensus       157 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~  236 (319)
                      .+.+.+...++.+|||||||+|.++..+++..+..+++++|+ +.+++.|++++...+  ...+++++.+|+.+ +++. 
T Consensus       173 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~-~~~~-  247 (374)
T 1qzz_A          173 APADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAG--LADRVTVAEGDFFK-PLPV-  247 (374)
T ss_dssp             HHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT--CTTTEEEEECCTTS-CCSC-
T ss_pred             HHHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcC--CCCceEEEeCCCCC-cCCC-
Confidence            344444455788999999999999999999987789999999 999999999887642  23489999999976 4443 


Q ss_pred             CccEEEecccccCCCCHH--HHHHHHHHhhcCCCeeEEEEe
Q 020988          237 FVDAVHAGAALHCWPSPS--NAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~--~~l~el~rvlk~g~~~g~~~~  275 (319)
                      .||+|++.+++||++++.  .+++++.++|+|+|...+..+
T Consensus       248 ~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          248 TADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            499999999999998875  889999999998776555433

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.49  E-value=2.1e-13  Score=125.16  Aligned_cols=115  Identities=12%  Similarity=0.228  Sum_probs=93.0

Q ss_pred             HHHHHhhc--cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988          157 MAQEYFKS--AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (319)
Q Consensus       157 ~l~~~l~~--~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (319)
                      .+.+.+..  .++.+|||||||+|.++..+++..+..+++++|++ .+++.|++++...+  ...+++++.+|+.+.+++
T Consensus       154 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~  230 (335)
T 2r3s_A          154 LIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQG--VASRYHTIAGSAFEVDYG  230 (335)
T ss_dssp             HHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHT--CGGGEEEEESCTTTSCCC
T ss_pred             HHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcC--CCcceEEEecccccCCCC
Confidence            44444554  67789999999999999999999777799999999 99999999886642  224699999999887776


Q ss_pred             CCCccEEEecccccCCCCH--HHHHHHHHHhhcCCCeeEEEEe
Q 020988          235 SGFVDAVHAGAALHCWPSP--SNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~--~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      + .||+|++.++++|++++  ...++++.++++|+|...+..+
T Consensus       231 ~-~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  272 (335)
T 2r3s_A          231 N-DYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDF  272 (335)
T ss_dssp             S-CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             C-CCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEee
Confidence            4 49999999999999665  5888999999888765554433

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.49  E-value=2e-13  Score=127.74  Aligned_cols=122  Identities=11%  Similarity=0.090  Sum_probs=95.3

Q ss_pred             HHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC
Q 020988          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (319)
Q Consensus       153 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (319)
                      ...+.+.+.+...++.+|||+|||+|.++..+++.++..+|+|+|+|+.+++.+++++..++.....+++++.+|+.+ +
T Consensus       209 ~~~~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-~  287 (375)
T 4dcm_A          209 IGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-G  287 (375)
T ss_dssp             HHHHHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-T
T ss_pred             HHHHHHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-c
Confidence            344567777777777999999999999999999998778999999999999999999877532222368899999987 5


Q ss_pred             CCCCCccEEEecccccCCCC-----HHHHHHHHHHhhcCCCeeEEEEe
Q 020988          233 FASGFVDAVHAGAALHCWPS-----PSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d-----~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      +++++||+|+++..+++...     ...+++++.++|||+|...++..
T Consensus       288 ~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n  335 (375)
T 4dcm_A          288 VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN  335 (375)
T ss_dssp             CCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence            56789999999988876322     13578899999988877766554

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.49  E-value=3.6e-13  Score=118.83  Aligned_cols=114  Identities=12%  Similarity=0.050  Sum_probs=96.0

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhc-CccCCCCeEEEEcCCCCC
Q 020988          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVRADVCRL  231 (319)
Q Consensus       154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~i~~~~~d~~~l  231 (319)
                      ....+...+...++.+|||+|||+|.++..+++. ++..+|+++|+++.+++.|+++++.. +   ..++.+..+|+.+.
T Consensus        84 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g---~~~v~~~~~d~~~~  160 (258)
T 2pwy_A           84 DASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ---VENVRFHLGKLEEA  160 (258)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC---CCCEEEEESCGGGC
T ss_pred             HHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC---CCCEEEEECchhhc
Confidence            3455666677778899999999999999999998 66679999999999999999988664 3   35899999999988


Q ss_pred             CCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          232 PFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      ++++++||+|++     +.+++..+++++.++|+|+|...+...
T Consensus       161 ~~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~  199 (258)
T 2pwy_A          161 ELEEAAYDGVAL-----DLMEPWKVLEKAALALKPDRFLVAYLP  199 (258)
T ss_dssp             CCCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred             CCCCCCcCEEEE-----CCcCHHHHHHHHHHhCCCCCEEEEEeC
Confidence            777789999997     567888899999999998877666555

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.49  E-value=3.4e-14  Score=140.09  Aligned_cols=106  Identities=15%  Similarity=0.282  Sum_probs=87.8

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC--CCCCCCccEEE
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAVH  242 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD~V~  242 (319)
                      ..+.+|||||||.|.++..+++.|.  +|+|||+|+.+++.|+.+..+.+   ..+++|.+++++++  ++.+++||+|+
T Consensus        65 ~~~~~vLDvGCG~G~~~~~la~~ga--~V~giD~~~~~i~~a~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~~fD~v~  139 (569)
T 4azs_A           65 GRPLNVLDLGCAQGFFSLSLASKGA--TIVGIDFQQENINVCRALAEENP---DFAAEFRVGRIEEVIAALEEGEFDLAI  139 (569)
T ss_dssp             TSCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTST---TSEEEEEECCHHHHHHHCCTTSCSEEE
T ss_pred             CCCCeEEEECCCCcHHHHHHHhCCC--EEEEECCCHHHHHHHHHHHHhcC---CCceEEEECCHHHHhhhccCCCccEEE
Confidence            3568999999999999999999987  99999999999999999887642   34799999999887  45678999999


Q ss_pred             ecccccCCCCHHHH--HHHHHHhhcCCCeeEEEEe
Q 020988          243 AGAALHCWPSPSNA--ASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       243 ~~~vl~h~~d~~~~--l~el~rvlk~g~~~g~~~~  275 (319)
                      +..+|||++|+...  +..+.+.+++.+..+++.+
T Consensus       140 ~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~  174 (569)
T 4azs_A          140 GLSVFHHIVHLHGIDEVKRLLSRLADVTQAVILEL  174 (569)
T ss_dssp             EESCHHHHHHHHCHHHHHHHHHHHHHHSSEEEEEC
T ss_pred             ECcchhcCCCHHHHHHHHHHHHHhccccceeeEEe
Confidence            99999999988632  3456666777766666655

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.49  E-value=1.8e-13  Score=119.28  Aligned_cols=100  Identities=11%  Similarity=0.091  Sum_probs=84.6

Q ss_pred             hccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC----CCCCCCCc
Q 020988          163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR----LPFASGFV  238 (319)
Q Consensus       163 ~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~----lp~~~~~f  238 (319)
                      ...++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.++++.+.     ..++.++.+|+..    +++. ++|
T Consensus        71 ~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~-----~~~v~~~~~d~~~~~~~~~~~-~~~  144 (230)
T 1fbn_A           71 PIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE-----RENIIPILGDANKPQEYANIV-EKV  144 (230)
T ss_dssp             CCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTT-----CTTEEEEECCTTCGGGGTTTS-CCE
T ss_pred             CCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhc-----CCCeEEEECCCCCcccccccC-ccE
Confidence            34578899999999999999999885456999999999999999998754     2689999999988    7766 789


Q ss_pred             cEEEecccccCCCCH---HHHHHHHHHhhcCCCeeEEE
Q 020988          239 DAVHAGAALHCWPSP---SNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       239 D~V~~~~vl~h~~d~---~~~l~el~rvlk~g~~~g~~  273 (319)
                      |+|+     ++++++   ..+++++.++|||+|.+.+.
T Consensus       145 D~v~-----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          145 DVIY-----EDVAQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             EEEE-----ECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEE-----EecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence            9998     566777   67799999999998877665

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.49  E-value=1e-13  Score=117.54  Aligned_cols=111  Identities=17%  Similarity=0.182  Sum_probs=87.8

Q ss_pred             hccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-CCCCCccE
Q 020988          163 KSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDA  240 (319)
Q Consensus       163 ~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~  240 (319)
                      ...++.+|||+|||+|.++..+++. ++..+|+|+|+|+.+++.|++++...+  ...+++++++|+.+++ +.+++||+
T Consensus        19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~~fD~   96 (197)
T 3eey_A           19 FVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLN--LIDRVTLIKDGHQNMDKYIDCPVKA   96 (197)
T ss_dssp             HCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTT--CGGGEEEECSCGGGGGGTCCSCEEE
T ss_pred             cCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCCeEEEECCHHHHhhhccCCceE
Confidence            3467889999999999999999887 345699999999999999999987742  1258999999998875 55689999


Q ss_pred             EEeccccc---------CCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          241 VHAGAALH---------CWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       241 V~~~~vl~---------h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      |++...+.         +..+...+++++.++|||+|...+..+
T Consensus        97 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~  140 (197)
T 3eey_A           97 VMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIY  140 (197)
T ss_dssp             EEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEc
Confidence            99886551         111335788899999988877766655

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.49  E-value=2.6e-13  Score=112.92  Aligned_cols=107  Identities=19%  Similarity=0.243  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHhhc--cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCC
Q 020988          152 DEEFKMAQEYFKS--AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC  229 (319)
Q Consensus       152 ~~~~~~l~~~l~~--~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~  229 (319)
                      ....+.+.+.+..  .++.+|||+|||+|.++..+++.+   +|+|+|+|+.+++.      .      .++.++++|+.
T Consensus         7 ~~~~~~l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~------~------~~~~~~~~d~~   71 (170)
T 3q87_B            7 GEDTYTLMDALEREGLEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES------H------RGGNLVRADLL   71 (170)
T ss_dssp             CHHHHHHHHHHHHHTCCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT------C------SSSCEEECSTT
T ss_pred             CccHHHHHHHHHhhcCCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc------c------cCCeEEECChh
Confidence            3344455555554  678899999999999999999876   99999999999987      1      37889999998


Q ss_pred             CCCCCCCCccEEEecccccCCCCH---------HHHHHHHHHhhcCCCeeEEEEe
Q 020988          230 RLPFASGFVDAVHAGAALHCWPSP---------SNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       230 ~lp~~~~~fD~V~~~~vl~h~~d~---------~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      + ++.+++||+|+++..+++.++.         ...++++.+.+ |+|...+...
T Consensus        72 ~-~~~~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~  124 (170)
T 3q87_B           72 C-SINQESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVI  124 (170)
T ss_dssp             T-TBCGGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEE
T ss_pred             h-hcccCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEe
Confidence            7 6666899999999988877655         56778888887 7776665554

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.49  E-value=2.9e-13  Score=119.50  Aligned_cols=115  Identities=17%  Similarity=0.233  Sum_probs=95.6

Q ss_pred             HHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC
Q 020988          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (319)
Q Consensus       153 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (319)
                      .....+...+...++.+|||+|||+|.++..+++. ++..+++++|+++.+++.|+++++..+  ...+++++.+|+.+.
T Consensus        80 ~~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~  157 (255)
T 3mb5_A           80 KDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAG--FDDRVTIKLKDIYEG  157 (255)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHT--CTTTEEEECSCGGGC
T ss_pred             hHHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcC--CCCceEEEECchhhc
Confidence            34456667777788999999999999999999998 667799999999999999999987653  233499999999854


Q ss_pred             CCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          232 PFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                       +++++||+|++     +.+++..+++++.++|+|+|...+...
T Consensus       158 -~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~  195 (255)
T 3mb5_A          158 -IEEENVDHVIL-----DLPQPERVVEHAAKALKPGGFFVAYTP  195 (255)
T ss_dssp             -CCCCSEEEEEE-----CSSCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred             -cCCCCcCEEEE-----CCCCHHHHHHHHHHHcCCCCEEEEEEC
Confidence             66788999987     577888899999999999877766554

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.49  E-value=2.1e-13  Score=124.84  Aligned_cols=110  Identities=11%  Similarity=0.096  Sum_probs=90.2

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (319)
                      ...+.+.+...++.+|||||||+|.++..+++.+. ..+|+|+|+|+.+++.|+++++..+   ..+++++.+|+.+.+.
T Consensus        64 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g---~~~v~~~~~d~~~~~~  140 (317)
T 1dl5_A           64 MALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLG---IENVIFVCGDGYYGVP  140 (317)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTT---CCSEEEEESCGGGCCG
T ss_pred             HHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCeEEEECChhhccc
Confidence            35566667777899999999999999999998876 3569999999999999999987652   3569999999988655


Q ss_pred             CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988          234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~  273 (319)
                      .+++||+|++..+++|++      +++.++|||+|...+.
T Consensus       141 ~~~~fD~Iv~~~~~~~~~------~~~~~~LkpgG~lvi~  174 (317)
T 1dl5_A          141 EFSPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIVP  174 (317)
T ss_dssp             GGCCEEEEEECSBBSCCC------HHHHHHEEEEEEEEEE
T ss_pred             cCCCeEEEEEcCCHHHHH------HHHHHhcCCCcEEEEE
Confidence            567999999999999996      4677888877655443

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.48  E-value=1e-13  Score=129.56  Aligned_cols=117  Identities=9%  Similarity=0.030  Sum_probs=91.8

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhh-------cCccCCCCeEEEEcC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ-------DNTILTSNLALVRAD  227 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~-------~~~~~~~~i~~~~~d  227 (319)
                      +..+.+.+...++.+|||||||+|.++..++...+..+|+|||+|+.+++.|+++.+.       .+. ...++.++++|
T Consensus       162 i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl-~~~rVefi~GD  240 (438)
T 3uwp_A          162 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGK-KHAEYTLERGD  240 (438)
T ss_dssp             HHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTB-CCCEEEEEECC
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCC-CCCCeEEEECc
Confidence            4556666677889999999999999999998765445699999999999999875421       110 12589999999


Q ss_pred             CCCCCCCC--CCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988          228 VCRLPFAS--GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       228 ~~~lp~~~--~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~  273 (319)
                      +.++|+.+  ..||+|+++..+ +.++....++++.++|||||.+-..
T Consensus       241 ~~~lp~~d~~~~aDVVf~Nn~~-F~pdl~~aL~Ei~RvLKPGGrIVss  287 (438)
T 3uwp_A          241 FLSEEWRERIANTSVIFVNNFA-FGPEVDHQLKERFANMKEGGRIVSS  287 (438)
T ss_dssp             TTSHHHHHHHHTCSEEEECCTT-CCHHHHHHHHHHHTTSCTTCEEEES
T ss_pred             ccCCccccccCCccEEEEcccc-cCchHHHHHHHHHHcCCCCcEEEEe
Confidence            99988754  479999998776 4567888899999999988766433

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.48  E-value=2.5e-13  Score=118.46  Aligned_cols=106  Identities=10%  Similarity=0.088  Sum_probs=89.3

Q ss_pred             hhccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC---CCCCCCC
Q 020988          162 FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR---LPFASGF  237 (319)
Q Consensus       162 l~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~---lp~~~~~  237 (319)
                      +...||.+|||+|||+|.++..+++. |+..+|+|+|+++.|++.++++.++     ..|+..+.+|...   .++..++
T Consensus        73 l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~-----~~ni~~V~~d~~~p~~~~~~~~~  147 (233)
T 4df3_A           73 LPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRD-----RRNIFPILGDARFPEKYRHLVEG  147 (233)
T ss_dssp             CCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTT-----CTTEEEEESCTTCGGGGTTTCCC
T ss_pred             cCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHh-----hcCeeEEEEeccCccccccccce
Confidence            45679999999999999999999987 7878999999999999999998765     3689999988865   3456789


Q ss_pred             ccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEE
Q 020988          238 VDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQ  274 (319)
Q Consensus       238 fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~  274 (319)
                      +|+|++  .+.|..++..+++++.++|||||.+.+.+
T Consensus       148 vDvVf~--d~~~~~~~~~~l~~~~r~LKpGG~lvI~i  182 (233)
T 4df3_A          148 VDGLYA--DVAQPEQAAIVVRNARFFLRDGGYMLMAI  182 (233)
T ss_dssp             EEEEEE--CCCCTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEEE--eccCChhHHHHHHHHHHhccCCCEEEEEE
Confidence            999986  35566678889999999999999876654

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.48  E-value=4.3e-13  Score=114.69  Aligned_cols=116  Identities=10%  Similarity=0.100  Sum_probs=86.8

Q ss_pred             HHHHHHhhc-cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC-CCC
Q 020988          156 KMAQEYFKS-AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPF  233 (319)
Q Consensus       156 ~~l~~~l~~-~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~  233 (319)
                      +.+.+.+.. .++.+|||+|||+|.++..+++.+. .+|+|+|+|+.+++.|+++++..+   ..+++++++|+.+ ++.
T Consensus        43 ~~l~~~l~~~~~~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~---~~~v~~~~~D~~~~~~~  118 (202)
T 2fpo_A           43 ETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLK---AGNARVVNSNAMSFLAQ  118 (202)
T ss_dssp             HHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTT---CCSEEEECSCHHHHHSS
T ss_pred             HHHHHHHHhhcCCCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcC---CCcEEEEECCHHHHHhh
Confidence            344444443 2678999999999999998777753 489999999999999999987753   2589999999877 465


Q ss_pred             CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEeec
Q 020988          234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFRY  277 (319)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~~  277 (319)
                      .+++||+|++...+ |..+....++++.+. +.++++|.+++..
T Consensus       119 ~~~~fD~V~~~~p~-~~~~~~~~l~~l~~~-~~L~pgG~l~i~~  160 (202)
T 2fpo_A          119 KGTPHNIVFVDPPF-RRGLLEETINLLEDN-GWLADEALIYVES  160 (202)
T ss_dssp             CCCCEEEEEECCSS-STTTHHHHHHHHHHT-TCEEEEEEEEEEE
T ss_pred             cCCCCCEEEECCCC-CCCcHHHHHHHHHhc-CccCCCcEEEEEE
Confidence            56799999998774 456777788888762 2344455555543

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.48  E-value=3.7e-13  Score=116.95  Aligned_cols=107  Identities=15%  Similarity=0.071  Sum_probs=87.3

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (319)
                      ...+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+|+.+++.++++....     .++.++.+|+.+....
T Consensus        59 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~~-----~~v~~~~~d~~~~~~~  131 (231)
T 1vbf_A           59 GIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIVD--KVVSVEINEKMYNYASKLLSYY-----NNIKLILGDGTLGYEE  131 (231)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTC-----SSEEEEESCGGGCCGG
T ss_pred             HHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHcC--EEEEEeCCHHHHHHHHHHHhhc-----CCeEEEECCccccccc
Confidence            45566666777889999999999999999999874  9999999999999999998653     2899999999873334


Q ss_pred             CCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEE
Q 020988          235 SGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQ  274 (319)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~  274 (319)
                      +++||+|++..+++|+.+      ++.++|+|+|...+..
T Consensus       132 ~~~fD~v~~~~~~~~~~~------~~~~~L~pgG~l~~~~  165 (231)
T 1vbf_A          132 EKPYDRVVVWATAPTLLC------KPYEQLKEGGIMILPI  165 (231)
T ss_dssp             GCCEEEEEESSBBSSCCH------HHHHTEEEEEEEEEEE
T ss_pred             CCCccEEEECCcHHHHHH------HHHHHcCCCcEEEEEE
Confidence            678999999999999863      5777877776555443

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.48  E-value=1.2e-13  Score=119.97  Aligned_cols=91  Identities=13%  Similarity=0.169  Sum_probs=79.9

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCC-CCCCCC-CCCccEEE
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CRLPFA-SGFVDAVH  242 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~-~~lp~~-~~~fD~V~  242 (319)
                      .++.+|||||||+|.++..+++.+.  +|+|+|+|+.+++.++++.        .+++++++|+ ..+|+. +++||+|+
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~--------~~~~~~~~d~~~~~~~~~~~~fD~v~  116 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQAA--RWAAYDFSPELLKLARANA--------PHADVYEWNGKGELPAGLGAPFGLIV  116 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHC--------TTSEEEECCSCSSCCTTCCCCEEEEE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHhC--------CCceEEEcchhhccCCcCCCCEEEEE
Confidence            5688999999999999999999865  9999999999999999872        4789999999 668887 89999999


Q ss_pred             ecccccCCCCHHHHHHHHHHhhcCCCeeE
Q 020988          243 AGAALHCWPSPSNAASVFSSSYSLLSICY  271 (319)
Q Consensus       243 ~~~vl~h~~d~~~~l~el~rvlk~g~~~g  271 (319)
                      +.      .++..+++++.++|||+|.+.
T Consensus       117 ~~------~~~~~~l~~~~~~LkpgG~l~  139 (226)
T 3m33_A          117 SR------RGPTSVILRLPELAAPDAHFL  139 (226)
T ss_dssp             EE------SCCSGGGGGHHHHEEEEEEEE
T ss_pred             eC------CCHHHHHHHHHHHcCCCcEEE
Confidence            87      467788999999999887655

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.48  E-value=1.3e-14  Score=127.14  Aligned_cols=101  Identities=17%  Similarity=0.152  Sum_probs=86.2

Q ss_pred             ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (319)
                      ..++.+|||+|||+|.++..+++.+.  +|+|+|+|+.+++.|++++...+  ...++.++++|+.+++ .+++||+|++
T Consensus        76 ~~~~~~vLD~gcG~G~~~~~la~~~~--~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~-~~~~~D~v~~  150 (241)
T 3gdh_A           76 SFKCDVVVDAFCGVGGNTIQFALTGM--RVIAIDIDPVKIALARNNAEVYG--IADKIEFICGDFLLLA-SFLKADVVFL  150 (241)
T ss_dssp             HSCCSEEEETTCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CGGGEEEEESCHHHHG-GGCCCSEEEE
T ss_pred             ccCCCEEEECccccCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcC--CCcCeEEEECChHHhc-ccCCCCEEEE
Confidence            34789999999999999999999874  99999999999999999987652  1147999999998876 5679999999


Q ss_pred             cccccCCCCHHHHHHHHHHhhcCCCe
Q 020988          244 GAALHCWPSPSNAASVFSSSYSLLSI  269 (319)
Q Consensus       244 ~~vl~h~~d~~~~l~el~rvlk~g~~  269 (319)
                      ..+++|..++...+.++.++|+|+|.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~L~pgG~  176 (241)
T 3gdh_A          151 SPPWGGPDYATAETFDIRTMMSPDGF  176 (241)
T ss_dssp             CCCCSSGGGGGSSSBCTTTSCSSCHH
T ss_pred             CCCcCCcchhhhHHHHHHhhcCCcce
Confidence            99999988777667778888888765

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.48  E-value=3.6e-13  Score=115.72  Aligned_cols=111  Identities=13%  Similarity=0.024  Sum_probs=87.6

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (319)
                      ...+.+.+...++.+|||||||+|.++..+++.+ +..+|+++|+|+.+++.+++++...+   ..++.++.+|+.....
T Consensus        66 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~~  142 (215)
T 2yxe_A           66 VGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLG---YDNVIVIVGDGTLGYE  142 (215)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHT---CTTEEEEESCGGGCCG
T ss_pred             HHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCCeEEEECCcccCCC
Confidence            3455566667788999999999999999999885 44699999999999999999887642   3579999999854322


Q ss_pred             CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEE
Q 020988          234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQ  274 (319)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~  274 (319)
                      .+++||+|++..+++|++      +++.++|||+|...+.+
T Consensus       143 ~~~~fD~v~~~~~~~~~~------~~~~~~L~pgG~lv~~~  177 (215)
T 2yxe_A          143 PLAPYDRIYTTAAGPKIP------EPLIRQLKDGGKLLMPV  177 (215)
T ss_dssp             GGCCEEEEEESSBBSSCC------HHHHHTEEEEEEEEEEE
T ss_pred             CCCCeeEEEECCchHHHH------HHHHHHcCCCcEEEEEE
Confidence            357899999999999986      36778887766554443

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.47  E-value=2.8e-13  Score=127.04  Aligned_cols=105  Identities=13%  Similarity=0.180  Sum_probs=89.5

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (319)
                      .++.+|||+|||+|.++..+++.+.  +|+|+|+|+.+++.|++++...    ..+++++.+|+.+.+..+++||+|+++
T Consensus       232 ~~~~~VLDlGcG~G~~~~~la~~g~--~V~gvDis~~al~~A~~n~~~~----~~~v~~~~~D~~~~~~~~~~fD~Ii~n  305 (381)
T 3dmg_A          232 VRGRQVLDLGAGYGALTLPLARMGA--EVVGVEDDLASVLSLQKGLEAN----ALKAQALHSDVDEALTEEARFDIIVTN  305 (381)
T ss_dssp             TTTCEEEEETCTTSTTHHHHHHTTC--EEEEEESBHHHHHHHHHHHHHT----TCCCEEEECSTTTTSCTTCCEEEEEEC
T ss_pred             CCCCEEEEEeeeCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHc----CCCeEEEEcchhhccccCCCeEEEEEC
Confidence            3678999999999999999999865  9999999999999999998775    235899999999987767899999999


Q ss_pred             ccccC-----CCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          245 AALHC-----WPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       245 ~vl~h-----~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      ..+++     ..+...+++++.++|||+|.+.+...
T Consensus       306 pp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n  341 (381)
T 3dmg_A          306 PPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSN  341 (381)
T ss_dssp             CCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEc
Confidence            99988     44566888999999988876665543

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.47  E-value=2.7e-13  Score=115.85  Aligned_cols=114  Identities=12%  Similarity=0.115  Sum_probs=83.1

Q ss_pred             HHHHHhhc-cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCC--CCeEEEEcCCCCCCC
Q 020988          157 MAQEYFKS-AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILT--SNLALVRADVCRLPF  233 (319)
Q Consensus       157 ~l~~~l~~-~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~--~~i~~~~~d~~~lp~  233 (319)
                      .+.+.+.. .++.+|||+|||+|.++..++..+. .+|+|+|+|+.+++.|+++++..+   .  .+++++.+|+.++..
T Consensus        43 ~l~~~l~~~~~~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~---~~~~~v~~~~~d~~~~~~  118 (201)
T 2ift_A           43 TLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLK---CSSEQAEVINQSSLDFLK  118 (201)
T ss_dssp             HHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTT---CCTTTEEEECSCHHHHTT
T ss_pred             HHHHHHHHhcCCCeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHHhC---CCccceEEEECCHHHHHH
Confidence            33344433 2678999999999999998777653 589999999999999999987652   2  589999999876432


Q ss_pred             --CCCC-ccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988          234 --ASGF-VDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFR  276 (319)
Q Consensus       234 --~~~~-fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~  276 (319)
                        .+++ ||+|++...++ ..+....++++.+ .+.++++|.+++.
T Consensus       119 ~~~~~~~fD~I~~~~~~~-~~~~~~~l~~~~~-~~~LkpgG~l~i~  162 (201)
T 2ift_A          119 QPQNQPHFDVVFLDPPFH-FNLAEQAISLLCE-NNWLKPNALIYVE  162 (201)
T ss_dssp             SCCSSCCEEEEEECCCSS-SCHHHHHHHHHHH-TTCEEEEEEEEEE
T ss_pred             hhccCCCCCEEEECCCCC-CccHHHHHHHHHh-cCccCCCcEEEEE
Confidence              3578 99999987754 5566777777743 2234444555553

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.47  E-value=2.1e-13  Score=121.10  Aligned_cols=115  Identities=10%  Similarity=0.217  Sum_probs=89.3

Q ss_pred             HHHHHhhcc-CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC--C
Q 020988          157 MAQEYFKSA-QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--F  233 (319)
Q Consensus       157 ~l~~~l~~~-~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~  233 (319)
                      .+..++... ++.+|||+|||+|.++..+++.++ .+|+|+|+++.+++.|++++...+  ...++.++.+|+.+++  +
T Consensus        39 ll~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~-~~v~gvDi~~~~~~~a~~n~~~~~--~~~~v~~~~~D~~~~~~~~  115 (259)
T 3lpm_A           39 LLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTK-AKIVGVEIQERLADMAKRSVAYNQ--LEDQIEIIEYDLKKITDLI  115 (259)
T ss_dssp             HHHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCC-CEEEEECCSHHHHHHHHHHHHHTT--CTTTEEEECSCGGGGGGTS
T ss_pred             HHHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcC-CcEEEEECCHHHHHHHHHHHHHCC--CcccEEEEECcHHHhhhhh
Confidence            444555556 789999999999999999998865 399999999999999999987653  2347999999998875  4


Q ss_pred             CCCCccEEEecccccCC-----C---------------CHHHHHHHHHHhhcCCCeeEEEE
Q 020988          234 ASGFVDAVHAGAALHCW-----P---------------SPSNAASVFSSSYSLLSICYLLQ  274 (319)
Q Consensus       234 ~~~~fD~V~~~~vl~h~-----~---------------d~~~~l~el~rvlk~g~~~g~~~  274 (319)
                      ++++||+|+++..+.+.     .               +...+++++.++|||+|.+.++.
T Consensus       116 ~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  176 (259)
T 3lpm_A          116 PKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVH  176 (259)
T ss_dssp             CTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEE
Confidence            57899999997544322     1               23467888999999888777644

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.46  E-value=3e-13  Score=121.15  Aligned_cols=111  Identities=19%  Similarity=0.178  Sum_probs=89.0

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhc-CccCCCCeEEEEcCCCCCCC
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVRADVCRLPF  233 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~i~~~~~d~~~lp~  233 (319)
                      ..+...+...++.+|||+|||+|.++..+++. ++..+|+|+|+++.+++.|++++... +   ..++.++.+|+.+ ++
T Consensus       100 ~~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g---~~~v~~~~~d~~~-~~  175 (275)
T 1yb2_A          100 SYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD---IGNVRTSRSDIAD-FI  175 (275)
T ss_dssp             ------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC---CTTEEEECSCTTT-CC
T ss_pred             HHHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCC---CCcEEEEECchhc-cC
Confidence            34555666778899999999999999999987 55569999999999999999998653 2   3579999999987 66


Q ss_pred             CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      ++++||+|++     |++++..+++++.++|||+|...+...
T Consensus       176 ~~~~fD~Vi~-----~~~~~~~~l~~~~~~LkpgG~l~i~~~  212 (275)
T 1yb2_A          176 SDQMYDAVIA-----DIPDPWNHVQKIASMMKPGSVATFYLP  212 (275)
T ss_dssp             CSCCEEEEEE-----CCSCGGGSHHHHHHTEEEEEEEEEEES
T ss_pred             cCCCccEEEE-----cCcCHHHHHHHHHHHcCCCCEEEEEeC
Confidence            6789999998     678888999999999988776655544

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.46  E-value=5e-13  Score=114.06  Aligned_cols=99  Identities=20%  Similarity=0.170  Sum_probs=81.4

Q ss_pred             CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecc
Q 020988          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (319)
Q Consensus       166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (319)
                      ++.+|||+|||+|.++..+++..+..+++|+|+|+.+++.+++++...+   ..++.++.+|+.+++ ++++||+|++..
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~-~~~~~D~i~~~~  140 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELK---LENIEPVQSRVEEFP-SEPPFDGVISRA  140 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTT---CSSEEEEECCTTTSC-CCSCEEEEECSC
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCCeEEEecchhhCC-ccCCcCEEEEec
Confidence            4789999999999999999988666799999999999999999887652   345999999998876 457899999754


Q ss_pred             cccCCCCHHHHHHHHHHhhcCCCeeEE
Q 020988          246 ALHCWPSPSNAASVFSSSYSLLSICYL  272 (319)
Q Consensus       246 vl~h~~d~~~~l~el~rvlk~g~~~g~  272 (319)
                          +.+...+++++.++++|+|...+
T Consensus       141 ----~~~~~~~l~~~~~~L~~gG~l~~  163 (207)
T 1jsx_A          141 ----FASLNDMVSWCHHLPGEQGRFYA  163 (207)
T ss_dssp             ----SSSHHHHHHHHTTSEEEEEEEEE
T ss_pred             ----cCCHHHHHHHHHHhcCCCcEEEE
Confidence                35677888888888777654443

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.46  E-value=6.5e-13  Score=122.15  Aligned_cols=110  Identities=15%  Similarity=0.208  Sum_probs=89.3

Q ss_pred             HHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCC
Q 020988          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (319)
Q Consensus       157 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~  236 (319)
                      .+.+.+...++.+|||||||+|.++..+++.+ ..+|+|+|+| .+++.|+++++..+  ...+++++.+|+.+++++++
T Consensus        29 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~v~~vD~s-~~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~~~~~  104 (328)
T 1g6q_1           29 AIIQNKDLFKDKIVLDVGCGTGILSMFAAKHG-AKHVIGVDMS-SIIEMAKELVELNG--FSDKITLLRGKLEDVHLPFP  104 (328)
T ss_dssp             HHHHHHHHHTTCEEEEETCTTSHHHHHHHHTC-CSEEEEEESS-THHHHHHHHHHHTT--CTTTEEEEESCTTTSCCSSS
T ss_pred             HHHhhHhhcCCCEEEEecCccHHHHHHHHHCC-CCEEEEEChH-HHHHHHHHHHHHcC--CCCCEEEEECchhhccCCCC
Confidence            33334445678899999999999999999875 3589999999 59999999887653  23579999999999988778


Q ss_pred             CccEEEecc---cccCCCCHHHHHHHHHHhhcCCCee
Q 020988          237 FVDAVHAGA---ALHCWPSPSNAASVFSSSYSLLSIC  270 (319)
Q Consensus       237 ~fD~V~~~~---vl~h~~d~~~~l~el~rvlk~g~~~  270 (319)
                      +||+|++..   .+.+..++..++.++.++|||+|..
T Consensus       105 ~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~l  141 (328)
T 1g6q_1          105 KVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLI  141 (328)
T ss_dssp             CEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEE
T ss_pred             cccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEE
Confidence            999999874   5556667888899999999887654

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.46  E-value=3.4e-13  Score=124.84  Aligned_cols=114  Identities=11%  Similarity=0.138  Sum_probs=92.2

Q ss_pred             HHHhhccC-CCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-CCCC
Q 020988          159 QEYFKSAQ-GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASG  236 (319)
Q Consensus       159 ~~~l~~~~-~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~  236 (319)
                      .+.+...+ +.+|||||||+|.++..+++..+..+++++|+ +.+++.+++++...+  ...+++++.+|+.+.+ +..+
T Consensus       171 l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~  247 (352)
T 3mcz_A          171 VSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHD--LGGRVEFFEKNLLDARNFEGG  247 (352)
T ss_dssp             HHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTT--CGGGEEEEECCTTCGGGGTTC
T ss_pred             HHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcC--CCCceEEEeCCcccCcccCCC
Confidence            33344445 78999999999999999999988889999999 889999999887642  2347999999998876 1346


Q ss_pred             CccEEEecccccCCCCH--HHHHHHHHHhhcCCCeeEEEEe
Q 020988          237 FVDAVHAGAALHCWPSP--SNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       237 ~fD~V~~~~vl~h~~d~--~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      .||+|++.+++||++++  ...+++++++|+|+|...+..+
T Consensus       248 ~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (352)
T 3mcz_A          248 AADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTM  288 (352)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence            79999999999999876  6888999999888765555443

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.46  E-value=1.2e-12  Score=113.68  Aligned_cols=107  Identities=15%  Similarity=0.125  Sum_probs=83.5

Q ss_pred             ccCCCeEEEEcCC-cChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-CCCCCCccEE
Q 020988          164 SAQGGLLVDVSCG-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PFASGFVDAV  241 (319)
Q Consensus       164 ~~~~~~VLDiGcG-~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~~~~~fD~V  241 (319)
                      ..++.+|||+||| +|.++..+++.. ..+|+|+|+|+.+++.|++++...+    .+++++++|+..+ ++.+++||+|
T Consensus        53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~----~~v~~~~~d~~~~~~~~~~~fD~I  127 (230)
T 3evz_A           53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNN----SNVRLVKSNGGIIKGVVEGTFDVI  127 (230)
T ss_dssp             CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTT----CCCEEEECSSCSSTTTCCSCEEEE
T ss_pred             cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhC----CCcEEEeCCchhhhhcccCceeEE
Confidence            4578999999999 999999999883 3499999999999999999987752    2799999997543 4556899999


Q ss_pred             EecccccCCCC-------------------HHHHHHHHHHhhcCCCeeEEEEe
Q 020988          242 HAGAALHCWPS-------------------PSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       242 ~~~~vl~h~~d-------------------~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      +++..+.+..+                   ...+++++.++|||+|.+.+.+.
T Consensus       128 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  180 (230)
T 3evz_A          128 FSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLP  180 (230)
T ss_dssp             EECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred             EECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEec
Confidence            99877665443                   36678888888888776665544

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.46  E-value=4.3e-13  Score=123.32  Aligned_cols=114  Identities=14%  Similarity=0.069  Sum_probs=93.2

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (319)
                      ..+.+.+...+ .+|||||||+|.++..+++..+..+++++|+ +.+++.|++++...+  ...+++++.+|+.+ +++ 
T Consensus       158 ~~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~-~~~-  231 (334)
T 2ip2_A          158 HEIPRLLDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLL--AGERVSLVGGDMLQ-EVP-  231 (334)
T ss_dssp             HHHHHHSCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHH--HTTSEEEEESCTTT-CCC-
T ss_pred             HHHHHhCCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcC--CCCcEEEecCCCCC-CCC-
Confidence            33444444344 8999999999999999999987779999999 999999999876532  23579999999987 555 


Q ss_pred             CCccEEEecccccCCCCHH--HHHHHHHHhhcCCCeeEEEEe
Q 020988          236 GFVDAVHAGAALHCWPSPS--NAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~--~~l~el~rvlk~g~~~g~~~~  275 (319)
                      ++||+|++.+++||++++.  ..++++.++++|+|...+..+
T Consensus       232 ~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  273 (334)
T 2ip2_A          232 SNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIER  273 (334)
T ss_dssp             SSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred             CCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            6899999999999998776  889999999999987666544

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.45  E-value=2.9e-13  Score=119.68  Aligned_cols=101  Identities=9%  Similarity=-0.052  Sum_probs=84.4

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC---CCCccEE
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA---SGFVDAV  241 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~---~~~fD~V  241 (319)
                      .++.+|||||||+|..+..++...+..+|+++|+|+.+++.|+++....+   ..+++++.+|+++++..   +++||+|
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---l~~v~~~~~d~~~~~~~~~~~~~fD~I  155 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLG---LKGARALWGRAEVLAREAGHREAYARA  155 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHT---CSSEEEEECCHHHHTTSTTTTTCEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC---CCceEEEECcHHHhhcccccCCCceEE
Confidence            46789999999999999999988777899999999999999999987753   34799999999887643   4799999


Q ss_pred             EecccccCCCCHHHHHHHHHHhhcCCCeeEE
Q 020988          242 HAGAALHCWPSPSNAASVFSSSYSLLSICYL  272 (319)
Q Consensus       242 ~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~  272 (319)
                      ++..    +.+...+++++.++|||+|.+..
T Consensus       156 ~s~a----~~~~~~ll~~~~~~LkpgG~l~~  182 (249)
T 3g89_A          156 VARA----VAPLCVLSELLLPFLEVGGAAVA  182 (249)
T ss_dssp             EEES----SCCHHHHHHHHGGGEEEEEEEEE
T ss_pred             EECC----cCCHHHHHHHHHHHcCCCeEEEE
Confidence            9964    45678888899999888765443

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.44  E-value=6.7e-13  Score=123.27  Aligned_cols=111  Identities=15%  Similarity=0.277  Sum_probs=89.9

Q ss_pred             HHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCC
Q 020988          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF  237 (319)
Q Consensus       158 l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~  237 (319)
                      +.+.+...++.+|||||||+|.++..+++.++..+++++|+ +.+++.|++++...+  ...+++++.+|+.+ +++. .
T Consensus       175 l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~-~~~~-~  249 (360)
T 1tw3_A          175 PAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEG--LSDRVDVVEGDFFE-PLPR-K  249 (360)
T ss_dssp             HHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTT--CTTTEEEEECCTTS-CCSS-C
T ss_pred             HHHhCCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcC--CCCceEEEeCCCCC-CCCC-C
Confidence            34444556778999999999999999999988789999999 999999999887642  23489999999876 3443 4


Q ss_pred             ccEEEecccccCCCCHH--HHHHHHHHhhcCCCeeEEE
Q 020988          238 VDAVHAGAALHCWPSPS--NAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       238 fD~V~~~~vl~h~~d~~--~~l~el~rvlk~g~~~g~~  273 (319)
                      ||+|++.+++||++++.  ..++++.++|+|+|...+.
T Consensus       250 ~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~  287 (360)
T 1tw3_A          250 ADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIH  287 (360)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            99999999999998774  7889999988877655444

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.44  E-value=5.8e-13  Score=111.58  Aligned_cols=115  Identities=15%  Similarity=0.148  Sum_probs=91.3

Q ss_pred             HHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC
Q 020988          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (319)
Q Consensus       153 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (319)
                      .....+...+...++.+|||+|||+|.++..+++.+  .+++|+|+|+.+++.+++++...+  ...++.++.+|+.+ +
T Consensus        20 ~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~-~   94 (192)
T 1l3i_A           20 EVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHG--LGDNVTLMEGDAPE-A   94 (192)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTT--CCTTEEEEESCHHH-H
T ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcC--CCcceEEEecCHHH-h
Confidence            334556666677788999999999999999999887  599999999999999999887642  12589999999876 2


Q ss_pred             CCC-CCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          233 FAS-GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       233 ~~~-~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      +++ ++||+|++..+++|   ....++++.++++|+|...+...
T Consensus        95 ~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~l~~gG~l~~~~~  135 (192)
T 1l3i_A           95 LCKIPDIDIAVVGGSGGE---LQEILRIIKDKLKPGGRIIVTAI  135 (192)
T ss_dssp             HTTSCCEEEEEESCCTTC---HHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             cccCCCCCEEEECCchHH---HHHHHHHHHHhcCCCcEEEEEec
Confidence            232 58999999888764   57889999999888776655544

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.44  E-value=6.8e-14  Score=117.46  Aligned_cols=112  Identities=11%  Similarity=-0.008  Sum_probs=83.6

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (319)
Q Consensus       154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (319)
                      .+..+..++  .++++|||+|||+|.++..++...+..+|+++|+|+.|++.+++++...+  ...++.+  .|.... .
T Consensus        39 fY~~~~~~l--~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g--~~~~v~~--~d~~~~-~  111 (200)
T 3fzg_A           39 FYTYVFGNI--KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLK--TTIKYRF--LNKESD-V  111 (200)
T ss_dssp             HHHHHHHHS--CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSC--CSSEEEE--ECCHHH-H
T ss_pred             HHHHHHhhc--CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC--CCccEEE--eccccc-C
Confidence            345555555  45789999999999999999888788899999999999999999987752  1124555  666544 3


Q ss_pred             CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      +.++||+|++..++||+.+....+..+.+.|+|   +|+++-
T Consensus       112 ~~~~~DvVLa~k~LHlL~~~~~al~~v~~~L~p---ggvfIS  150 (200)
T 3fzg_A          112 YKGTYDVVFLLKMLPVLKQQDVNILDFLQLFHT---QNFVIS  150 (200)
T ss_dssp             TTSEEEEEEEETCHHHHHHTTCCHHHHHHTCEE---EEEEEE
T ss_pred             CCCCcChhhHhhHHHhhhhhHHHHHHHHHHhCC---CCEEEE
Confidence            458899999999999995555555555555554   455544

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.44  E-value=4.1e-13  Score=120.26  Aligned_cols=126  Identities=14%  Similarity=0.132  Sum_probs=84.8

Q ss_pred             CCCCcHHHHHHHHHHh-hccCCCeEEEEcCCcCh----HHHHHHhh-CC---CCeEEEEeCCHHHHHHHHHHHhhc----
Q 020988          147 GFPGPDEEFKMAQEYF-KSAQGGLLVDVSCGSGL----FSRKFAKS-GT---YSGVVALDFSENMLRQCYDFIKQD----  213 (319)
Q Consensus       147 ~~~~~~~~~~~l~~~l-~~~~~~~VLDiGcG~G~----~~~~l~~~-g~---~~~v~gvD~s~~~l~~a~~~~~~~----  213 (319)
                      .|+.....++.+.+.+ +..++.+|||+|||||.    ++..+++. +.   ..+|+|+|+|+.|++.|++..-..    
T Consensus        85 ~FfRd~~~f~~l~~~llp~~~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~  164 (274)
T 1af7_A           85 AFFREAHHFPILAEHARRRHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELK  164 (274)
T ss_dssp             CTTTTTTHHHHHHHHHHHSCSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGT
T ss_pred             cccCChHHHHHHHHHccCCCCCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhh
Confidence            3444333445555433 32245799999999998    55556655 21   248999999999999999864100    


Q ss_pred             ------------------C--c----cCCCCeEEEEcCCCCCCCC-CCCccEEEecccccCCCCH--HHHHHHHHHhhcC
Q 020988          214 ------------------N--T----ILTSNLALVRADVCRLPFA-SGFVDAVHAGAALHCWPSP--SNAASVFSSSYSL  266 (319)
Q Consensus       214 ------------------~--~----~~~~~i~~~~~d~~~lp~~-~~~fD~V~~~~vl~h~~d~--~~~l~el~rvlk~  266 (319)
                                        +  .    ....++.|.++|+.+.|++ .++||+|+|.+++.|+.++  .+++++++++|+|
T Consensus       165 ~~~~~~~~~~f~~~~~~~~~~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~p  244 (274)
T 1af7_A          165 TLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKP  244 (274)
T ss_dssp             TSCHHHHHHHEEECCTTSCSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEE
T ss_pred             cCCHHHHHHHhhccccCCCCceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCC
Confidence                              0  0    0013699999999887665 5789999999999999654  4556666666555


Q ss_pred             CCeeEEEEe
Q 020988          267 LSICYLLQF  275 (319)
Q Consensus       267 g~~~g~~~~  275 (319)
                      |   |.+++
T Consensus       245 g---G~L~l  250 (274)
T 1af7_A          245 D---GLLFA  250 (274)
T ss_dssp             E---EEEEE
T ss_pred             C---cEEEE
Confidence            4   55555

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.43  E-value=3.3e-13  Score=116.87  Aligned_cols=114  Identities=6%  Similarity=0.074  Sum_probs=86.4

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC-C
Q 020988          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-L  231 (319)
Q Consensus       154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~-l  231 (319)
                      ..+.+...+...++.+|||||||+|..+..+++.. +..+|+++|+++.+++.|+++++..+  ...+++++.+|+.+ +
T Consensus        46 ~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~l  123 (221)
T 3u81_A           46 KGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAG--LQDKVTILNGASQDLI  123 (221)
T ss_dssp             HHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHT--CGGGEEEEESCHHHHG
T ss_pred             HHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcC--CCCceEEEECCHHHHH
Confidence            34555555666678999999999999999999863 35699999999999999999987653  23469999999855 3


Q ss_pred             CCCC-----CCccEEEecccccCCCCHHHHHHHHHHhhcCCCee
Q 020988          232 PFAS-----GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSIC  270 (319)
Q Consensus       232 p~~~-----~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~  270 (319)
                      +...     ++||+|++....++..+....++.+ ++|||||.+
T Consensus       124 ~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~l  166 (221)
T 3u81_A          124 PQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVL  166 (221)
T ss_dssp             GGTTTTSCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEE
T ss_pred             HHHHHhcCCCceEEEEEcCCcccchHHHHHHHhc-cccCCCeEE
Confidence            3222     6899999988887775555556655 777776643

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.43  E-value=6.2e-13  Score=124.57  Aligned_cols=105  Identities=17%  Similarity=0.189  Sum_probs=85.8

Q ss_pred             HhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccE
Q 020988          161 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA  240 (319)
Q Consensus       161 ~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~  240 (319)
                      .....++.+|||||||+|.++..+++.+. .+|+|+|+| .+++.|+++++..+  ...+++++.+|+.+++++ ++||+
T Consensus        58 ~~~~~~~~~VLDlGcGtG~ls~~la~~g~-~~V~gvD~s-~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~-~~~D~  132 (376)
T 3r0q_C           58 NKHHFEGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMADHARALVKANN--LDHIVEVIEGSVEDISLP-EKVDV  132 (376)
T ss_dssp             TTTTTTTCEEEEESCTTTHHHHHHHHTTC-SEEEEEESS-TTHHHHHHHHHHTT--CTTTEEEEESCGGGCCCS-SCEEE
T ss_pred             ccccCCCCEEEEeccCcCHHHHHHHhcCC-CEEEEEccH-HHHHHHHHHHHHcC--CCCeEEEEECchhhcCcC-CcceE
Confidence            34456789999999999999999999863 599999999 99999999987753  235699999999998876 89999


Q ss_pred             EEecccccCC---CCHHHHHHHHHHhhcCCCee
Q 020988          241 VHAGAALHCW---PSPSNAASVFSSSYSLLSIC  270 (319)
Q Consensus       241 V~~~~vl~h~---~d~~~~l~el~rvlk~g~~~  270 (319)
                      |++..+.+++   .++..+++++.++|||+|.+
T Consensus       133 Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~l  165 (376)
T 3r0q_C          133 IISEWMGYFLLRESMFDSVISARDRWLKPTGVM  165 (376)
T ss_dssp             EEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEE
T ss_pred             EEEcChhhcccchHHHHHHHHHHHhhCCCCeEE
Confidence            9995544433   56778889999998887644

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.43  E-value=7.6e-13  Score=112.91  Aligned_cols=101  Identities=17%  Similarity=0.152  Sum_probs=81.7

Q ss_pred             ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (319)
                      ..++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.|++++...+   ..++.++.+|+.+.+  +++||+|++
T Consensus        58 ~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~--~~~fD~i~~  131 (205)
T 3grz_A           58 MVKPLTVADVGTGSGILAIAAHKLG-AKSVLATDISDESMTAAEENAALNG---IYDIALQKTSLLADV--DGKFDLIVA  131 (205)
T ss_dssp             CSSCCEEEEETCTTSHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTT---CCCCEEEESSTTTTC--CSCEEEEEE
T ss_pred             ccCCCEEEEECCCCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcC---CCceEEEeccccccC--CCCceEEEE
Confidence            3567899999999999999988763 4699999999999999999987652   334999999997754  579999999


Q ss_pred             cccccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988          244 GAALHCWPSPSNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       244 ~~vl~h~~d~~~~l~el~rvlk~g~~~g~~  273 (319)
                      ..+++++   ..+++++.++|+++|...+.
T Consensus       132 ~~~~~~~---~~~l~~~~~~L~~gG~l~~~  158 (205)
T 3grz_A          132 NILAEIL---LDLIPQLDSHLNEDGQVIFS  158 (205)
T ss_dssp             ESCHHHH---HHHGGGSGGGEEEEEEEEEE
T ss_pred             CCcHHHH---HHHHHHHHHhcCCCCEEEEE
Confidence            9888764   56677777887776655544

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.43  E-value=6.8e-13  Score=115.85  Aligned_cols=112  Identities=9%  Similarity=0.170  Sum_probs=87.7

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-C
Q 020988          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P  232 (319)
Q Consensus       154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p  232 (319)
                      ....+...+...++.+|||||||+|..+..+++..+..+|+++|+++.+++.|+++++..+  ...+++++.+|+.+. +
T Consensus        59 ~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~  136 (232)
T 3ntv_A           59 TLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYH--FENQVRIIEGNALEQFE  136 (232)
T ss_dssp             HHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTT--CTTTEEEEESCGGGCHH
T ss_pred             HHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEECCHHHHHH
Confidence            3455666666667899999999999999999997667799999999999999999987753  235899999999764 3


Q ss_pred             -CCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCee
Q 020988          233 -FASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSIC  270 (319)
Q Consensus       233 -~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~  270 (319)
                       ..+++||+|++...   ..+...+++++.++|||+|.+
T Consensus       137 ~~~~~~fD~V~~~~~---~~~~~~~l~~~~~~LkpgG~l  172 (232)
T 3ntv_A          137 NVNDKVYDMIFIDAA---KAQSKKFFEIYTPLLKHQGLV  172 (232)
T ss_dssp             HHTTSCEEEEEEETT---SSSHHHHHHHHGGGEEEEEEE
T ss_pred             hhccCCccEEEEcCc---HHHHHHHHHHHHHhcCCCeEE
Confidence             33689999997654   345567778888777766543

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.43  E-value=1.2e-12  Score=116.38  Aligned_cols=117  Identities=11%  Similarity=0.039  Sum_probs=90.4

Q ss_pred             HHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhh---cCccCCCCeEEEEcCCCCC--
Q 020988          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ---DNTILTSNLALVRADVCRL--  231 (319)
Q Consensus       157 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~---~~~~~~~~i~~~~~d~~~l--  231 (319)
                      .+..++...++.+|||+|||+|.++..+++..+..+|+|+|+++.+++.|++++..   .+  ...++.++.+|+.+.  
T Consensus        27 lL~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~--l~~~v~~~~~D~~~~~~  104 (260)
T 2ozv_A           27 LLASLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAA--FSARIEVLEADVTLRAK  104 (260)
T ss_dssp             HHHHTCCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTT--TGGGEEEEECCTTCCHH
T ss_pred             HHHHHhcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCC--CcceEEEEeCCHHHHhh
Confidence            34445555677899999999999999999998777999999999999999999865   32  223699999999887  


Q ss_pred             -----CCCCCCccEEEecccccCC------------------CCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          232 -----PFASGFVDAVHAGAALHCW------------------PSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       232 -----p~~~~~fD~V~~~~vl~h~------------------~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                           ++.+++||+|+++-.+...                  .+...+++++.++||++|.+.++..
T Consensus       105 ~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  171 (260)
T 2ozv_A          105 ARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISR  171 (260)
T ss_dssp             HHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             hhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence                 2557899999997433221                  2356788889999998887766543

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.43  E-value=3.1e-13  Score=112.57  Aligned_cols=118  Identities=16%  Similarity=0.169  Sum_probs=84.8

Q ss_pred             HHHHHHhh-ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC-CCC
Q 020988          156 KMAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPF  233 (319)
Q Consensus       156 ~~l~~~l~-~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~  233 (319)
                      +.+.+.+. ..++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.|+++++..+  ...++.++.+|+.+ ++.
T Consensus        20 ~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~   96 (177)
T 2esr_A           20 GAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRG-MSAAVLVEKNRKAQAIIQDNIIMTK--AENRFTLLKMEAERAIDC   96 (177)
T ss_dssp             HHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTT-CCEEEEECCCHHHHHHHHHHHHTTT--CGGGEEEECSCHHHHHHH
T ss_pred             HHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHcC--CCCceEEEECcHHHhHHh
Confidence            44445554 4578899999999999999998873 4599999999999999999987642  12469999999877 344


Q ss_pred             CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEeecc
Q 020988          234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFRYT  278 (319)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~~~  278 (319)
                      .+++||+|++...+++ .+....++.+.+ .+.++++|.+++...
T Consensus        97 ~~~~fD~i~~~~~~~~-~~~~~~~~~l~~-~~~L~~gG~l~~~~~  139 (177)
T 2esr_A           97 LTGRFDLVFLDPPYAK-ETIVATIEALAA-KNLLSEQVMVVCETD  139 (177)
T ss_dssp             BCSCEEEEEECCSSHH-HHHHHHHHHHHH-TTCEEEEEEEEEEEE
T ss_pred             hcCCCCEEEECCCCCc-chHHHHHHHHHh-CCCcCCCcEEEEEEC
Confidence            4567999999866532 234455666652 244555666666443

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.43  E-value=1e-12  Score=117.54  Aligned_cols=116  Identities=13%  Similarity=0.112  Sum_probs=95.2

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhc-CccCCCCeEEEEcCCCCC
Q 020988          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVRADVCRL  231 (319)
Q Consensus       154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~i~~~~~d~~~l  231 (319)
                      ....+...+...++.+|||+|||+|.++..+++. ++..+|+++|+++.+++.|++++... + ....++.++.+|+.+.
T Consensus        87 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g-~~~~~v~~~~~d~~~~  165 (280)
T 1i9g_A           87 DAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYG-QPPDNWRLVVSDLADS  165 (280)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHT-SCCTTEEEECSCGGGC
T ss_pred             HHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC-CCCCcEEEEECchHhc
Confidence            3455666667778899999999999999999985 55669999999999999999988653 1 0135899999999988


Q ss_pred             CCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          232 PFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      ++++++||+|++     +++++..+++++.++|+|+|...+...
T Consensus       166 ~~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~  204 (280)
T 1i9g_A          166 ELPDGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVLMVYVA  204 (280)
T ss_dssp             CCCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred             CCCCCceeEEEE-----CCcCHHHHHHHHHHhCCCCCEEEEEeC
Confidence            877789999998     566888899999999998877666655

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.43  E-value=3.9e-13  Score=110.85  Aligned_cols=114  Identities=14%  Similarity=0.134  Sum_probs=84.0

Q ss_pred             HHHHHHhhcc--CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-C
Q 020988          156 KMAQEYFKSA--QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P  232 (319)
Q Consensus       156 ~~l~~~l~~~--~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p  232 (319)
                      +.+...+...  ++.+|||+|||+|.++..+++.++  +|+|+|+|+.+++.|++++...+   . +++++.+|+.+. +
T Consensus        29 ~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~~~---~-~~~~~~~d~~~~~~  102 (171)
T 1ws6_A           29 KALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGW--EAVLVEKDPEAVRLLKENVRRTG---L-GARVVALPVEVFLP  102 (171)
T ss_dssp             HHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTC--EEEEECCCHHHHHHHHHHHHHHT---C-CCEEECSCHHHHHH
T ss_pred             HHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHHcC---C-ceEEEeccHHHHHH
Confidence            3444444432  678999999999999999999887  69999999999999999987652   2 789999998763 2


Q ss_pred             -C--CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEeecc
Q 020988          233 -F--ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFRYT  278 (319)
Q Consensus       233 -~--~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~~~  278 (319)
                       .  ..++||+|++..+++  .+....++.+.+ .+.++++|.+++...
T Consensus       103 ~~~~~~~~~D~i~~~~~~~--~~~~~~~~~~~~-~~~L~~gG~~~~~~~  148 (171)
T 1ws6_A          103 EAKAQGERFTVAFMAPPYA--MDLAALFGELLA-SGLVEAGGLYVLQHP  148 (171)
T ss_dssp             HHHHTTCCEEEEEECCCTT--SCTTHHHHHHHH-HTCEEEEEEEEEEEE
T ss_pred             hhhccCCceEEEEECCCCc--hhHHHHHHHHHh-hcccCCCcEEEEEeC
Confidence             1  134899999988765  455667777773 233444556666443

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.42  E-value=2.7e-13  Score=125.44  Aligned_cols=117  Identities=13%  Similarity=0.141  Sum_probs=92.9

Q ss_pred             HHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC
Q 020988          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (319)
Q Consensus       153 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (319)
                      ...+.+.+.+...++.+|||+|||+|.++..+++.++..+|+|+|+|+.+++.+++++...    ...+.++.+|+...+
T Consensus       183 ~~~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~----~~~~~~~~~d~~~~~  258 (343)
T 2pjd_A          183 VGSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAAN----GVEGEVFASNVFSEV  258 (343)
T ss_dssp             HHHHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHT----TCCCEEEECSTTTTC
T ss_pred             HHHHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHh----CCCCEEEEccccccc
Confidence            3456666667555678999999999999999999987679999999999999999998764    234678889987654


Q ss_pred             CCCCCccEEEecccccC-----CCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          233 FASGFVDAVHAGAALHC-----WPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       233 ~~~~~fD~V~~~~vl~h-----~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                        +++||+|+++.++++     ..+...+++++.++|||+|.+.++..
T Consensus       259 --~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  304 (343)
T 2pjd_A          259 --KGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVAN  304 (343)
T ss_dssp             --CSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred             --cCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEc
Confidence              679999999998885     33456778888888888776655443

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.42  E-value=5.4e-13  Score=111.71  Aligned_cols=118  Identities=13%  Similarity=0.069  Sum_probs=84.9

Q ss_pred             HHHHHHHHhh-ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC
Q 020988          154 EFKMAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (319)
Q Consensus       154 ~~~~l~~~l~-~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (319)
                      ..+.+.+.+. ..++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.|++++...+  ...+++++.+|+.+..
T Consensus        31 ~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~  107 (187)
T 2fhp_A           31 VKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRG-MDKSICIEKNFAALKVIKENIAITK--EPEKFEVRKMDANRAL  107 (187)
T ss_dssp             HHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHT--CGGGEEEEESCHHHHH
T ss_pred             HHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhC--CCcceEEEECcHHHHH
Confidence            3344555553 3467899999999999999888764 3599999999999999999887642  1247999999987632


Q ss_pred             ----CCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988          233 ----FASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFR  276 (319)
Q Consensus       233 ----~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~  276 (319)
                          ..+++||+|++...++ ..+....++.+.. .+.++++|.+++.
T Consensus       108 ~~~~~~~~~fD~i~~~~~~~-~~~~~~~~~~l~~-~~~L~~gG~l~~~  153 (187)
T 2fhp_A          108 EQFYEEKLQFDLVLLDPPYA-KQEIVSQLEKMLE-RQLLTNEAVIVCE  153 (187)
T ss_dssp             HHHHHTTCCEEEEEECCCGG-GCCHHHHHHHHHH-TTCEEEEEEEEEE
T ss_pred             HHHHhcCCCCCEEEECCCCC-chhHHHHHHHHHH-hcccCCCCEEEEE
Confidence                2267899999987754 4466677777721 3334455555554

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.42  E-value=5.4e-14  Score=120.19  Aligned_cols=114  Identities=17%  Similarity=0.084  Sum_probs=70.6

Q ss_pred             HHHHHhhc-cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988          157 MAQEYFKS-AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (319)
Q Consensus       157 ~l~~~l~~-~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (319)
                      .+.+.+.. .++.+|||+|||+|.++..+++.++..+++|+|+|+.+++.|++++...+    .+++++++|+.+ ++.+
T Consensus        20 ~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~----~~~~~~~~d~~~-~~~~   94 (215)
T 4dzr_A           20 EAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFG----AVVDWAAADGIE-WLIE   94 (215)
T ss_dssp             HHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-----------------------CCHHHHHH-HHHH
T ss_pred             HHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhC----CceEEEEcchHh-hhhh
Confidence            34444443 67889999999999999999999777799999999999999999886642    168888888877 5554


Q ss_pred             -----CCccEEEecccccCCCCH--------------------------HHHHHHHHHhhcCCCeeEEEEe
Q 020988          236 -----GFVDAVHAGAALHCWPSP--------------------------SNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       236 -----~~fD~V~~~~vl~h~~d~--------------------------~~~l~el~rvlk~g~~~g~~~~  275 (319)
                           ++||+|+++..+++..+.                          ..+++++.++|||+|...++..
T Consensus        95 ~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  165 (215)
T 4dzr_A           95 RAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEV  165 (215)
T ss_dssp             HHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEEC
T ss_pred             hhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence                 899999996544332211                          5667778888888887444443

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.41  E-value=1.3e-12  Score=115.02  Aligned_cols=104  Identities=15%  Similarity=0.263  Sum_probs=83.3

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCcc-----CCCCeEEEEcCCCC-CC--CCCC
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI-----LTSNLALVRADVCR-LP--FASG  236 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~-----~~~~i~~~~~d~~~-lp--~~~~  236 (319)
                      .++.+|||||||+|.++..+++.++..+|+|+|+|+.+++.+++++......     ...++.++.+|+.+ ++  +.++
T Consensus        48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~  127 (246)
T 2vdv_E           48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG  127 (246)
T ss_dssp             SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence            4678999999999999999999987778999999999999999887653000     13589999999987 66  6678


Q ss_pred             CccEEEecccccCCCCH-------------HHHHHHHHHhhcCCCeeEEE
Q 020988          237 FVDAVHAGAALHCWPSP-------------SNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       237 ~fD~V~~~~vl~h~~d~-------------~~~l~el~rvlk~g~~~g~~  273 (319)
                      ++|.|++.     ++++             ..+++++.++|+|||.+.+.
T Consensus       128 ~~d~v~~~-----~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~  172 (246)
T 2vdv_E          128 QLSKMFFC-----FPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTI  172 (246)
T ss_dssp             CEEEEEEE-----SCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccCEEEEE-----CCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEE
Confidence            99999854     3444             47899999999888766554

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.41  E-value=1.2e-12  Score=114.42  Aligned_cols=108  Identities=12%  Similarity=0.117  Sum_probs=85.0

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (319)
                      ...+.+.+...++.+|||||||+|.++..+++.++ .+|+++|+++.+++.|++++...+   ..++.++.+|+ ..+++
T Consensus        80 ~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~---~~~v~~~~~d~-~~~~~  154 (235)
T 1jg1_A           80 VAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAG---VKNVHVILGDG-SKGFP  154 (235)
T ss_dssp             HHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTT---CCSEEEEESCG-GGCCG
T ss_pred             HHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcC---CCCcEEEECCc-ccCCC
Confidence            34555666777889999999999999999999874 599999999999999999987642   35699999997 34444


Q ss_pred             C-CCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988          235 S-GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       235 ~-~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~  273 (319)
                      + .+||+|++..+++++++      ++.++|+|+|...+.
T Consensus       155 ~~~~fD~Ii~~~~~~~~~~------~~~~~L~pgG~lvi~  188 (235)
T 1jg1_A          155 PKAPYDVIIVTAGAPKIPE------PLIEQLKIGGKLIIP  188 (235)
T ss_dssp             GGCCEEEEEECSBBSSCCH------HHHHTEEEEEEEEEE
T ss_pred             CCCCccEEEECCcHHHHHH------HHHHhcCCCcEEEEE
Confidence            3 35999999999999863      567777766544433

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.41  E-value=1.8e-12  Score=116.05  Aligned_cols=84  Identities=13%  Similarity=0.167  Sum_probs=68.9

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (319)
                      +.+.+.+. .++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.++++....+   ..++.++++|+.+. +++
T Consensus       100 ~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~---~~~v~~~~~d~~~~-~~~  174 (276)
T 2b3t_A          100 EQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLA---IKNIHILQSDWFSA-LAG  174 (276)
T ss_dssp             HHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHT---CCSEEEECCSTTGG-GTT
T ss_pred             HHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CCceEEEEcchhhh-ccc
Confidence            34444443 56789999999999999999988667799999999999999999987652   34799999999763 346


Q ss_pred             CCccEEEec
Q 020988          236 GFVDAVHAG  244 (319)
Q Consensus       236 ~~fD~V~~~  244 (319)
                      ++||+|+++
T Consensus       175 ~~fD~Iv~n  183 (276)
T 2b3t_A          175 QQFAMIVSN  183 (276)
T ss_dssp             CCEEEEEEC
T ss_pred             CCccEEEEC
Confidence            789999998

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.41  E-value=3.9e-12  Score=118.05  Aligned_cols=129  Identities=19%  Similarity=0.031  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC
Q 020988          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (319)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (319)
                      ......+.......++.+|||+|||+|.++..++..+ +..+++|+|+|+.+++.|+++++..+   ..+++++++|+.+
T Consensus       189 ~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g---~~~i~~~~~D~~~  265 (354)
T 3tma_A          189 PVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASG---LSWIRFLRADARH  265 (354)
T ss_dssp             HHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTT---CTTCEEEECCGGG
T ss_pred             HHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcC---CCceEEEeCChhh
Confidence            3345566666666788999999999999999999976 66799999999999999999998753   2389999999999


Q ss_pred             CCCCCCCccEEEecccccCCCC--------HHHHHHHHHHhhcCCCeeEEEEeeccchhcc
Q 020988          231 LPFASGFVDAVHAGAALHCWPS--------PSNAASVFSSSYSLLSICYLLQFRYTKIIEL  283 (319)
Q Consensus       231 lp~~~~~fD~V~~~~vl~h~~d--------~~~~l~el~rvlk~g~~~g~~~~~~~~~~~~  283 (319)
                      ++.+.+.||+|+++-.+.....        ...+++++.++++|+|...++......+.+.
T Consensus       266 ~~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~~~~~~~  326 (354)
T 3tma_A          266 LPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRPALLKRA  326 (354)
T ss_dssp             GGGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCHHHHHHH
T ss_pred             CccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHH
Confidence            8877778999999654432211        2567888999999998877766654333333

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.40  E-value=2.2e-12  Score=115.55  Aligned_cols=114  Identities=17%  Similarity=0.163  Sum_probs=93.6

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC
Q 020988          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (319)
Q Consensus       154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (319)
                      ....+...+...++.+|||+|||+|.++..+++. ++..+|+++|+++.+++.|+++++..+  ...++.++.+|+.+. 
T Consensus       100 ~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~-  176 (277)
T 1o54_A          100 DSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG--LIERVTIKVRDISEG-  176 (277)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTT--CGGGEEEECCCGGGC-
T ss_pred             HHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcC--CCCCEEEEECCHHHc-
Confidence            3455666677778899999999999999999998 666799999999999999999987642  124789999998776 


Q ss_pred             CCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          233 FASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      +++++||+|++     +.+++..+++++.++|+|+|...+...
T Consensus       177 ~~~~~~D~V~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (277)
T 1o54_A          177 FDEKDVDALFL-----DVPDPWNYIDKCWEALKGGGRFATVCP  214 (277)
T ss_dssp             CSCCSEEEEEE-----CCSCGGGTHHHHHHHEEEEEEEEEEES
T ss_pred             ccCCccCEEEE-----CCcCHHHHHHHHHHHcCCCCEEEEEeC
Confidence            56678999998     467888899999999998876665554

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.40  E-value=1.6e-12  Score=120.52  Aligned_cols=109  Identities=17%  Similarity=0.201  Sum_probs=85.6

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (319)
                      +.+.+.+...++.+|||||||+|.++..+++.+ ..+|+|+|+|+ +++.|+++++..+  ...+++++.+|+.+++++ 
T Consensus        40 ~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~--l~~~v~~~~~d~~~~~~~-  114 (348)
T 2y1w_A           40 RAILQNHTDFKDKIVLDVGCGSGILSFFAAQAG-ARKIYAVEAST-MAQHAEVLVKSNN--LTDRIVVIPGKVEEVSLP-  114 (348)
T ss_dssp             HHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTT-CSEEEEEECST-HHHHHHHHHHHTT--CTTTEEEEESCTTTCCCS-
T ss_pred             HHHHhccccCCcCEEEEcCCCccHHHHHHHhCC-CCEEEEECCHH-HHHHHHHHHHHcC--CCCcEEEEEcchhhCCCC-
Confidence            344555556688999999999999999998874 46999999996 8899999887653  236899999999998765 


Q ss_pred             CCccEEEecccccCCCC--HHHHHHHHHHhhcCCCe
Q 020988          236 GFVDAVHAGAALHCWPS--PSNAASVFSSSYSLLSI  269 (319)
Q Consensus       236 ~~fD~V~~~~vl~h~~d--~~~~l~el~rvlk~g~~  269 (319)
                      ++||+|++..+++|+.+  ....+.++.++|||+|.
T Consensus       115 ~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~  150 (348)
T 2y1w_A          115 EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGN  150 (348)
T ss_dssp             SCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEE
T ss_pred             CceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeE
Confidence            68999999998888754  34566666677666543

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.40  E-value=1.7e-12  Score=122.98  Aligned_cols=114  Identities=8%  Similarity=-0.034  Sum_probs=87.6

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHH-------HHHHhhcCccC-CCCeEEEEc
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQC-------YDFIKQDNTIL-TSNLALVRA  226 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a-------~~~~~~~~~~~-~~~i~~~~~  226 (319)
                      ...+.+.+...++.+|||||||+|.++..+++..+..+|+|+|+++.+++.|       ++++...+  . ..+++++.+
T Consensus       231 v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~G--l~~~nV~~i~g  308 (433)
T 1u2z_A          231 LSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYG--MRLNNVEFSLK  308 (433)
T ss_dssp             HHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTT--BCCCCEEEEES
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcC--CCCCceEEEEc
Confidence            4555566667788999999999999999999875445899999999999998       77776542  1 258999988


Q ss_pred             CCCCC--CC--CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeE
Q 020988          227 DVCRL--PF--ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICY  271 (319)
Q Consensus       227 d~~~l--p~--~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g  271 (319)
                      |....  ++  ..++||+|+++.++ +.+++...++++.++|||||...
T Consensus       309 D~~~~~~~~~~~~~~FDvIvvn~~l-~~~d~~~~L~el~r~LKpGG~lV  356 (433)
T 1u2z_A          309 KSFVDNNRVAELIPQCDVILVNNFL-FDEDLNKKVEKILQTAKVGCKII  356 (433)
T ss_dssp             SCSTTCHHHHHHGGGCSEEEECCTT-CCHHHHHHHHHHHTTCCTTCEEE
T ss_pred             CccccccccccccCCCCEEEEeCcc-ccccHHHHHHHHHHhCCCCeEEE
Confidence            65432  22  24689999998776 44677788889999988887543

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.40  E-value=2.3e-12  Score=113.68  Aligned_cols=113  Identities=8%  Similarity=0.030  Sum_probs=87.9

Q ss_pred             HHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC-
Q 020988          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-  230 (319)
Q Consensus       153 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~-  230 (319)
                      ...+.+..+....++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++...+  ...+++++.+|+.+ 
T Consensus        50 ~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g--~~~~v~~~~~d~~~~  127 (248)
T 3tfw_A           50 NQGQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAG--VDQRVTLREGPALQS  127 (248)
T ss_dssp             HHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTT--CTTTEEEEESCHHHH
T ss_pred             HHHHHHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEcCHHHH
Confidence            3344555555566789999999999999999999855 5799999999999999999987653  23579999999866 


Q ss_pred             CCCC--CCCccEEEecccccCCCCHHHHHHHHHHhhcCCCee
Q 020988          231 LPFA--SGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSIC  270 (319)
Q Consensus       231 lp~~--~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~  270 (319)
                      ++..  .++||+|++...   ..+....++++.++|||||..
T Consensus       128 l~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~l  166 (248)
T 3tfw_A          128 LESLGECPAFDLIFIDAD---KPNNPHYLRWALRYSRPGTLI  166 (248)
T ss_dssp             HHTCCSCCCCSEEEECSC---GGGHHHHHHHHHHTCCTTCEE
T ss_pred             HHhcCCCCCeEEEEECCc---hHHHHHHHHHHHHhcCCCeEE
Confidence            3322  348999998653   335567889999999998744

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.39  E-value=2.9e-13  Score=117.93  Aligned_cols=105  Identities=16%  Similarity=0.108  Sum_probs=76.1

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCC-HHHHHHH---HHHHhhcCccCCCCeEEEEcCCCCCCCC-CCCcc
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFS-ENMLRQC---YDFIKQDNTILTSNLALVRADVCRLPFA-SGFVD  239 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s-~~~l~~a---~~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~~fD  239 (319)
                      .++.+|||||||+|.++..+++..+..+|+|+|+| +.|++.|   +++....   ...++.++++|+..+|.. .+.+|
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~---~~~~v~~~~~d~~~l~~~~~d~v~   99 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKG---GLSNVVFVIAAAESLPFELKNIAD   99 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGT---CCSSEEEECCBTTBCCGGGTTCEE
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHc---CCCCeEEEEcCHHHhhhhccCeEE
Confidence            56789999999999999999977677799999999 7777776   6665543   245899999999988632 13444


Q ss_pred             EEEecccccC-----CCCHHHHHHHHHHhhcCCCeeEE
Q 020988          240 AVHAGAALHC-----WPSPSNAASVFSSSYSLLSICYL  272 (319)
Q Consensus       240 ~V~~~~vl~h-----~~d~~~~l~el~rvlk~g~~~g~  272 (319)
                      .|++...+.+     ..++..++++++|+|||||.+.+
T Consensus       100 ~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i  137 (225)
T 3p2e_A          100 SISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF  137 (225)
T ss_dssp             EEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred             EEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence            4444332111     12335678999999998877665

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.39  E-value=1.9e-12  Score=112.75  Aligned_cols=112  Identities=14%  Similarity=0.143  Sum_probs=88.9

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-C
Q 020988          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P  232 (319)
Q Consensus       154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p  232 (319)
                      ....+...+...++.+|||||||+|.++..+++..+..+|+++|+++.+++.|++++...+  ...++.++.+|+.+. +
T Consensus        42 ~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~  119 (233)
T 2gpy_A           42 GMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALG--LESRIELLFGDALQLGE  119 (233)
T ss_dssp             HHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTT--CTTTEEEECSCGGGSHH
T ss_pred             HHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEECCHHHHHH
Confidence            3556666666678899999999999999999998766799999999999999999987643  224799999998774 4


Q ss_pred             CC--CCCccEEEecccccCCCCHHHHHHHHHHhhcCCCee
Q 020988          233 FA--SGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSIC  270 (319)
Q Consensus       233 ~~--~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~  270 (319)
                      ..  +++||+|++....+   +....++++.++|+|+|..
T Consensus       120 ~~~~~~~fD~I~~~~~~~---~~~~~l~~~~~~L~pgG~l  156 (233)
T 2gpy_A          120 KLELYPLFDVLFIDAAKG---QYRRFFDMYSPMVRPGGLI  156 (233)
T ss_dssp             HHTTSCCEEEEEEEGGGS---CHHHHHHHHGGGEEEEEEE
T ss_pred             hcccCCCccEEEECCCHH---HHHHHHHHHHHHcCCCeEE
Confidence            32  57899999987754   6677788888887766543

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.39  E-value=1.1e-12  Score=121.48  Aligned_cols=110  Identities=14%  Similarity=0.092  Sum_probs=85.3

Q ss_pred             HHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCC
Q 020988          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF  237 (319)
Q Consensus       158 l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~  237 (319)
                      +.+.+...++.+|||||||+|.++..+++..+..+++++|++ .++.  +++.+..  ....+++++.+|+. .+++  +
T Consensus       176 ~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~--~~~~~~~--~~~~~v~~~~~d~~-~~~p--~  247 (348)
T 3lst_A          176 LARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA-EVVA--RHRLDAP--DVAGRWKVVEGDFL-REVP--H  247 (348)
T ss_dssp             HHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH-HHHT--TCCCCCG--GGTTSEEEEECCTT-TCCC--C
T ss_pred             HHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCH-HHhh--ccccccc--CCCCCeEEEecCCC-CCCC--C
Confidence            344444556789999999999999999999888899999994 4444  2222211  13467999999996 3444  8


Q ss_pred             ccEEEecccccCCCCH--HHHHHHHHHhhcCCCeeEEEEe
Q 020988          238 VDAVHAGAALHCWPSP--SNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       238 fD~V~~~~vl~h~~d~--~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      ||+|++.+++||++++  ..++++++++|||||.+.+..+
T Consensus       248 ~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~  287 (348)
T 3lst_A          248 ADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDA  287 (348)
T ss_dssp             CSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEEC
T ss_pred             CcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            9999999999999988  5899999999999987665544

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.39  E-value=2.9e-12  Score=111.05  Aligned_cols=107  Identities=20%  Similarity=0.282  Sum_probs=84.6

Q ss_pred             hccCCCeEEEEcCCcChHHHHHHhhC-----CCCeEEEEeCCHHHHHHHHHHHhhcCc--cCCCCeEEEEcCCCCCC---
Q 020988          163 KSAQGGLLVDVSCGSGLFSRKFAKSG-----TYSGVVALDFSENMLRQCYDFIKQDNT--ILTSNLALVRADVCRLP---  232 (319)
Q Consensus       163 ~~~~~~~VLDiGcG~G~~~~~l~~~g-----~~~~v~gvD~s~~~l~~a~~~~~~~~~--~~~~~i~~~~~d~~~lp---  232 (319)
                      ...++.+|||||||+|.++..+++..     +..+|+|+|+++.+++.|++++...+.  ....++.++.+|+....   
T Consensus        77 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  156 (227)
T 2pbf_A           77 VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEE  156 (227)
T ss_dssp             TSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHH
T ss_pred             hCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhccccc
Confidence            35678899999999999999999875     356999999999999999999876420  00357999999998765   


Q ss_pred             -CCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          233 -FASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       233 -~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                       ...++||+|++..+++|+.      +++.++|+|+|...+.+.
T Consensus       157 ~~~~~~fD~I~~~~~~~~~~------~~~~~~LkpgG~lv~~~~  194 (227)
T 2pbf_A          157 KKELGLFDAIHVGASASELP------EILVDLLAENGKLIIPIE  194 (227)
T ss_dssp             HHHHCCEEEEEECSBBSSCC------HHHHHHEEEEEEEEEEEE
T ss_pred             CccCCCcCEEEECCchHHHH------HHHHHhcCCCcEEEEEEc
Confidence             5567899999999999873      667888887765544433

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.39  E-value=1e-12  Score=122.83  Aligned_cols=98  Identities=18%  Similarity=0.156  Sum_probs=83.8

Q ss_pred             ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (319)
                      ..++.+|||||||+|.++..+++.++..+++++|+ +.+++.+++         ..+++++.+|+.+ ++++  ||+|++
T Consensus       207 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~-~~~~--~D~v~~  273 (372)
T 1fp1_D          207 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP---------LSGIEHVGGDMFA-SVPQ--GDAMIL  273 (372)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC---------CTTEEEEECCTTT-CCCC--EEEEEE
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh---------cCCCEEEeCCccc-CCCC--CCEEEE
Confidence            34578999999999999999999988888999999 888877664         2479999999987 6654  999999


Q ss_pred             cccccCCCCHH--HHHHHHHHhhcCCCeeEEEE
Q 020988          244 GAALHCWPSPS--NAASVFSSSYSLLSICYLLQ  274 (319)
Q Consensus       244 ~~vl~h~~d~~--~~l~el~rvlk~g~~~g~~~  274 (319)
                      .+++||++++.  .++++++++|+|+|...+..
T Consensus       274 ~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e  306 (372)
T 1fp1_D          274 KAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVE  306 (372)
T ss_dssp             ESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ecccccCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            99999999887  89999999999876655553

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.38  E-value=3.9e-12  Score=110.15  Aligned_cols=103  Identities=22%  Similarity=0.314  Sum_probs=81.9

Q ss_pred             ccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCc--cCCCCeEEEEcCCCCCCCCCCCccE
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNT--ILTSNLALVRADVCRLPFASGFVDA  240 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~--~~~~~i~~~~~d~~~lp~~~~~fD~  240 (319)
                      ..++.+|||||||+|.++..+++. ++..+|+++|+++.+++.+++++...+.  ....++.++.+|+...+..+++||+
T Consensus        75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  154 (226)
T 1i1n_A           75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA  154 (226)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence            567899999999999999999887 4546999999999999999998865321  0034799999999876655678999


Q ss_pred             EEecccccCCCCHHHHHHHHHHhhcCCCeeEE
Q 020988          241 VHAGAALHCWPSPSNAASVFSSSYSLLSICYL  272 (319)
Q Consensus       241 V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~  272 (319)
                      |++..+++++.      +++.++|||+|...+
T Consensus       155 i~~~~~~~~~~------~~~~~~LkpgG~lv~  180 (226)
T 1i1n_A          155 IHVGAAAPVVP------QALIDQLKPGGRLIL  180 (226)
T ss_dssp             EEECSBBSSCC------HHHHHTEEEEEEEEE
T ss_pred             EEECCchHHHH------HHHHHhcCCCcEEEE
Confidence            99999998874      467778777654443

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.38  E-value=1.4e-12  Score=107.56  Aligned_cols=99  Identities=16%  Similarity=0.146  Sum_probs=82.7

Q ss_pred             ccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC--------CC
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------FA  234 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------~~  234 (319)
                      ..++.+|||+|||+|.++..+++. ++..+++|+|+++ +++             ..++.++.+|+.+.+        ++
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~-------------~~~~~~~~~d~~~~~~~~~~~~~~~   85 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDP-------------IVGVDFLQGDFRDELVMKALLERVG   85 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCC-------------CTTEEEEESCTTSHHHHHHHHHHHT
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-ccc-------------cCcEEEEEcccccchhhhhhhccCC
Confidence            467889999999999999999988 5557999999999 652             247899999998876        67


Q ss_pred             CCCccEEEecccccCCCCH-----------HHHHHHHHHhhcCCCeeEEEEee
Q 020988          235 SGFVDAVHAGAALHCWPSP-----------SNAASVFSSSYSLLSICYLLQFR  276 (319)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~-----------~~~l~el~rvlk~g~~~g~~~~~  276 (319)
                      +++||+|++..++++..+.           ...++++.++++++|...+..+.
T Consensus        86 ~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  138 (180)
T 1ej0_A           86 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ  138 (180)
T ss_dssp             TCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred             CCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence            7899999999999988776           67889999999888776655553

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.38  E-value=4.6e-12  Score=113.89  Aligned_cols=117  Identities=14%  Similarity=0.077  Sum_probs=87.2

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeC-CHHHHHHHHHHHh-----hcCcc--CCCCeEEEEcC
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDF-SENMLRQCYDFIK-----QDNTI--LTSNLALVRAD  227 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~-s~~~l~~a~~~~~-----~~~~~--~~~~i~~~~~d  227 (319)
                      +.+.......++.+|||||||+|.++..+++.+ ..+|+|+|+ |+.+++.|+++..     ..+..  ...++.+...|
T Consensus        69 ~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~  147 (281)
T 3bzb_A           69 DTLCWQPELIAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYR  147 (281)
T ss_dssp             HHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECC
T ss_pred             HHHHhcchhcCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEec
Confidence            344444444577899999999999999988875 358999999 8999999999883     32100  00367787665


Q ss_pred             CCCCC--C----CCCCccEEEecccccCCCCHHHHHHHHHHhhc---C--CCeeEEE
Q 020988          228 VCRLP--F----ASGFVDAVHAGAALHCWPSPSNAASVFSSSYS---L--LSICYLL  273 (319)
Q Consensus       228 ~~~lp--~----~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk---~--g~~~g~~  273 (319)
                      ..+..  +    .+++||+|++..+++|.++...+++.+.++|+   +  +|...++
T Consensus       148 ~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~  204 (281)
T 3bzb_A          148 WGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVT  204 (281)
T ss_dssp             TTSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred             CCCccHHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEE
Confidence            44321  1    35789999999999999999999999999999   8  7765543

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.37  E-value=3.4e-12  Score=111.25  Aligned_cols=105  Identities=18%  Similarity=0.136  Sum_probs=81.8

Q ss_pred             hccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC---CCCCCCCc
Q 020988          163 KSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR---LPFASGFV  238 (319)
Q Consensus       163 ~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~---lp~~~~~f  238 (319)
                      ...++.+|||+|||+|.++..+++. ++..+|+|+|+|+.+++.+.++.+..     .++.++.+|+.+   +++.+++|
T Consensus        74 ~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~-----~~v~~~~~d~~~~~~~~~~~~~~  148 (233)
T 2ipx_A           74 HIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR-----TNIIPVIEDARHPHKYRMLIAMV  148 (233)
T ss_dssp             CCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC-----TTEEEECSCTTCGGGGGGGCCCE
T ss_pred             cCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc-----CCeEEEEcccCChhhhcccCCcE
Confidence            3457889999999999999999987 35569999999999888887776552     589999999987   45557899


Q ss_pred             cEEEecccccCCCCH-HHHHHHHHHhhcCCCeeEEEEe
Q 020988          239 DAVHAGAALHCWPSP-SNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       239 D~V~~~~vl~h~~d~-~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      |+|++...   .++. ..+++++.++|||+|...+.+.
T Consensus       149 D~V~~~~~---~~~~~~~~~~~~~~~LkpgG~l~i~~~  183 (233)
T 2ipx_A          149 DVIFADVA---QPDQTRIVALNAHTFLRNGGHFVISIK  183 (233)
T ss_dssp             EEEEECCC---CTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEEEcCC---CccHHHHHHHHHHHHcCCCeEEEEEEc
Confidence            99998544   2233 3447789999998877666433

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.37  E-value=9.7e-13  Score=118.63  Aligned_cols=111  Identities=16%  Similarity=0.158  Sum_probs=85.0

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (319)
Q Consensus       154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (319)
                      ..+.+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+|+.+++.++++....+  ...+++++.+|+.++++
T Consensus        16 i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~--~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~D~~~~~~   91 (285)
T 1zq9_A           16 IINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELHKRVQGTP--VASKLQVLVGDVLKTDL   91 (285)
T ss_dssp             HHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTST--TGGGEEEEESCTTTSCC
T ss_pred             HHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHhcC--CCCceEEEEcceecccc
Confidence            345566667677889999999999999999999876  99999999999999999875431  12479999999998876


Q ss_pred             CCCCccEEEec-----------ccccCCCCHHHHH----HHH--HHhhcCCCee
Q 020988          234 ASGFVDAVHAG-----------AALHCWPSPSNAA----SVF--SSSYSLLSIC  270 (319)
Q Consensus       234 ~~~~fD~V~~~-----------~vl~h~~d~~~~l----~el--~rvlk~g~~~  270 (319)
                      +  +||+|+++           .+++|.++...++    +|+  +++++||+..
T Consensus        92 ~--~fD~vv~nlpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~  143 (285)
T 1zq9_A           92 P--FFDTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKL  143 (285)
T ss_dssp             C--CCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTT
T ss_pred             h--hhcEEEEecCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCcc
Confidence            5  79999996           3555555443211    333  4689999865

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.37  E-value=4.7e-12  Score=116.62  Aligned_cols=117  Identities=17%  Similarity=0.235  Sum_probs=88.2

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcC------c--cCCCCeEEE
Q 020988          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDN------T--ILTSNLALV  224 (319)
Q Consensus       154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~------~--~~~~~i~~~  224 (319)
                      ....+...+...++.+|||+|||+|.++..+++. ++..+|+|+|+++.+++.|++++...+      .  ....+++++
T Consensus        93 ~~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~  172 (336)
T 2b25_A           93 DINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI  172 (336)
T ss_dssp             HHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEE
Confidence            3455666667788999999999999999999987 666799999999999999999887421      0  012589999


Q ss_pred             EcCCCCC--CCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          225 RADVCRL--PFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       225 ~~d~~~l--p~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      .+|+.+.  ++++++||+|++.     .+++...++++.++|+|+|.+.+...
T Consensus       173 ~~d~~~~~~~~~~~~fD~V~~~-----~~~~~~~l~~~~~~LkpgG~lv~~~~  220 (336)
T 2b25_A          173 HKDISGATEDIKSLTFDAVALD-----MLNPHVTLPVFYPHLKHGGVCAVYVV  220 (336)
T ss_dssp             ESCTTCCC-------EEEEEEC-----SSSTTTTHHHHGGGEEEEEEEEEEES
T ss_pred             ECChHHcccccCCCCeeEEEEC-----CCCHHHHHHHHHHhcCCCcEEEEEeC
Confidence            9999886  5666789999984     34555678899999998877765554

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.37  E-value=1.5e-12  Score=120.62  Aligned_cols=98  Identities=16%  Similarity=0.191  Sum_probs=83.9

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (319)
                      .++.+|||||||+|.++..+++..+..+++++|+ +.+++.|++.         .+++++.+|+.+ +++  .||+|++.
T Consensus       187 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------~~v~~~~~d~~~-~~p--~~D~v~~~  253 (352)
T 1fp2_A          187 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS---------NNLTYVGGDMFT-SIP--NADAVLLK  253 (352)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB---------TTEEEEECCTTT-CCC--CCSEEEEE
T ss_pred             ccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC---------CCcEEEeccccC-CCC--CccEEEee
Confidence            4568999999999999999999987789999999 9998877641         369999999976 555  39999999


Q ss_pred             ccccCCCCHH--HHHHHHHHhhcC---CCeeEEEEe
Q 020988          245 AALHCWPSPS--NAASVFSSSYSL---LSICYLLQF  275 (319)
Q Consensus       245 ~vl~h~~d~~--~~l~el~rvlk~---g~~~g~~~~  275 (319)
                      +++||++++.  ..+++++++|||   +|...+..+
T Consensus       254 ~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~  289 (352)
T 1fp2_A          254 YILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDM  289 (352)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred             hhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence            9999999888  899999999999   776655544

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.37  E-value=4.8e-12  Score=113.63  Aligned_cols=104  Identities=16%  Similarity=0.116  Sum_probs=85.0

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (319)
                      .++.+|||+|||+|.++..+++.+.. +|+|+|+|+.+++.|+++++.++  ...+++++++|+.+++. +++||+|++.
T Consensus       124 ~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~--~~~~v~~~~~D~~~~~~-~~~fD~Vi~~  199 (278)
T 2frn_A          124 KPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNK--VEDRMSAYNMDNRDFPG-ENIADRILMG  199 (278)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTT--CTTTEEEECSCTTTCCC-CSCEEEEEEC
T ss_pred             CCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcC--CCceEEEEECCHHHhcc-cCCccEEEEC
Confidence            45889999999999999999998863 69999999999999999987653  23459999999999876 6899999885


Q ss_pred             ccccCCCCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988          245 AALHCWPSPSNAASVFSSSYSLLSICYLLQFR  276 (319)
Q Consensus       245 ~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~  276 (319)
                      ..    .+...+++++.++|+|||...+..+.
T Consensus       200 ~p----~~~~~~l~~~~~~LkpgG~l~~~~~~  227 (278)
T 2frn_A          200 YV----VRTHEFIPKALSIAKDGAIIHYHNTV  227 (278)
T ss_dssp             CC----SSGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred             Cc----hhHHHHHHHHHHHCCCCeEEEEEEee
Confidence            33    34567788999999987766555554

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.37  E-value=1.2e-11  Score=108.35  Aligned_cols=112  Identities=13%  Similarity=0.081  Sum_probs=92.9

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (319)
                      ...+...+...++.+|||+|||+|.++..+++.+  .+++++|+++.+++.|+++....+  ...++.++.+|+.+..+.
T Consensus        80 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~  155 (248)
T 2yvl_A           80 SFYIALKLNLNKEKRVLEFGTGSGALLAVLSEVA--GEVWTFEAVEEFYKTAQKNLKKFN--LGKNVKFFNVDFKDAEVP  155 (248)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHHHHTT--CCTTEEEECSCTTTSCCC
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHhC--CEEEEEecCHHHHHHHHHHHHHcC--CCCcEEEEEcChhhcccC
Confidence            3456666667788999999999999999999884  499999999999999999887642  225799999999885435


Q ss_pred             CCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          235 SGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      +++||+|++     +.+++..+++++.++|+++|...+...
T Consensus       156 ~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~  191 (248)
T 2yvl_A          156 EGIFHAAFV-----DVREPWHYLEKVHKSLMEGAPVGFLLP  191 (248)
T ss_dssp             TTCBSEEEE-----CSSCGGGGHHHHHHHBCTTCEEEEEES
T ss_pred             CCcccEEEE-----CCcCHHHHHHHHHHHcCCCCEEEEEeC
Confidence            678999987     566888889999999999998777666

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.36  E-value=3e-12  Score=109.74  Aligned_cols=107  Identities=15%  Similarity=0.130  Sum_probs=82.3

Q ss_pred             HHHHHhhccCCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-CCC
Q 020988          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PFA  234 (319)
Q Consensus       157 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~~  234 (319)
                      .+..++...++.+|||||||+|..+..+++..+ ..+|+++|+|+.+++.|+++++..+  ...+++++.+|+.+. +..
T Consensus        47 ~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~  124 (210)
T 3c3p_A           47 LLYLLARIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNG--LIDRVELQVGDPLGIAAGQ  124 (210)
T ss_dssp             HHHHHHHHHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHS--GGGGEEEEESCHHHHHTTC
T ss_pred             HHHHHHHhhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCC--CCceEEEEEecHHHHhccC
Confidence            333334445678999999999999999998754 5699999999999999999887643  234699999998653 544


Q ss_pred             CCCccEEEecccccCCCCHHHHHHHHHHhhcCCCe
Q 020988          235 SGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSI  269 (319)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~  269 (319)
                      ++ ||+|++...   ..+....++++.++|+|+|.
T Consensus       125 ~~-fD~v~~~~~---~~~~~~~l~~~~~~LkpgG~  155 (210)
T 3c3p_A          125 RD-IDILFMDCD---VFNGADVLERMNRCLAKNAL  155 (210)
T ss_dssp             CS-EEEEEEETT---TSCHHHHHHHHGGGEEEEEE
T ss_pred             CC-CCEEEEcCC---hhhhHHHHHHHHHhcCCCeE
Confidence            46 999998743   34677888888888777654

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.36  E-value=1.8e-12  Score=113.72  Aligned_cols=107  Identities=11%  Similarity=-0.013  Sum_probs=83.1

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhh----CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~----g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (319)
                      ..+...+...++.+|||||||+|..+..+++.    ++..+|+|+|+|+.+++.|+.        ...+++++++|+.+.
T Consensus        71 ~~l~~~l~~~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~--------~~~~v~~~~gD~~~~  142 (236)
T 2bm8_A           71 AVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS--------DMENITLHQGDCSDL  142 (236)
T ss_dssp             HHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG--------GCTTEEEEECCSSCS
T ss_pred             HHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc--------cCCceEEEECcchhH
Confidence            34444444456789999999999999999887    556799999999999888872        135899999999884


Q ss_pred             ---CCCC-CCccEEEecccccCCCCHHHHHHHHHH-hhcCCCeeEEE
Q 020988          232 ---PFAS-GFVDAVHAGAALHCWPSPSNAASVFSS-SYSLLSICYLL  273 (319)
Q Consensus       232 ---p~~~-~~fD~V~~~~vl~h~~d~~~~l~el~r-vlk~g~~~g~~  273 (319)
                         +..+ .+||+|++...  |. +....++++.+ +|||||.+.+.
T Consensus       143 ~~l~~~~~~~fD~I~~d~~--~~-~~~~~l~~~~r~~LkpGG~lv~~  186 (236)
T 2bm8_A          143 TTFEHLREMAHPLIFIDNA--HA-NTFNIMKWAVDHLLEEGDYFIIE  186 (236)
T ss_dssp             GGGGGGSSSCSSEEEEESS--CS-SHHHHHHHHHHHTCCTTCEEEEC
T ss_pred             HHHHhhccCCCCEEEECCc--hH-hHHHHHHHHHHhhCCCCCEEEEE
Confidence               5433 47999998665  43 77888999997 99998865543

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.36  E-value=3.9e-12  Score=113.21  Aligned_cols=115  Identities=15%  Similarity=0.025  Sum_probs=85.7

Q ss_pred             HHHhhc-cCCCeEEEEcCCc--ChHHHHH-HhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC--
Q 020988          159 QEYFKS-AQGGLLVDVSCGS--GLFSRKF-AKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--  232 (319)
Q Consensus       159 ~~~l~~-~~~~~VLDiGcG~--G~~~~~l-~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--  232 (319)
                      .+++.. ....+|||||||+  +.++..+ .+..+..+|+++|.|+.|++.|++++...   ...+++++++|+.+++  
T Consensus        70 v~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~---~~~~~~~v~aD~~~~~~~  146 (277)
T 3giw_A           70 VAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLAST---PEGRTAYVEADMLDPASI  146 (277)
T ss_dssp             HHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCC---SSSEEEEEECCTTCHHHH
T ss_pred             HHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccC---CCCcEEEEEecccChhhh
Confidence            334432 3346899999997  4344444 44467789999999999999999988642   1246999999998852  


Q ss_pred             ----CCCCCcc-----EEEecccccCCCC---HHHHHHHHHHhhcCCCeeEEEEee
Q 020988          233 ----FASGFVD-----AVHAGAALHCWPS---PSNAASVFSSSYSLLSICYLLQFR  276 (319)
Q Consensus       233 ----~~~~~fD-----~V~~~~vl~h~~d---~~~~l~el~rvlk~g~~~g~~~~~  276 (319)
                          ...+.||     .|+++.+|||+++   +..+++++.+.|+||+.+.+..+.
T Consensus       147 l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~  202 (277)
T 3giw_A          147 LDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGT  202 (277)
T ss_dssp             HTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEEC
T ss_pred             hcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEecc
Confidence                1134565     6889999999998   567899999999999987766553

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.35  E-value=6.3e-12  Score=108.57  Aligned_cols=112  Identities=13%  Similarity=0.000  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC
Q 020988          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (319)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (319)
                      ....+.+..++...++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++...+  ...+++++.+|+.+
T Consensus        44 ~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~  121 (223)
T 3duw_A           44 PTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERAN--LNDRVEVRTGLALD  121 (223)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEESCHHH
T ss_pred             HHHHHHHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEcCHHH
Confidence            33445555555666789999999999999999999855 5699999999999999999987653  23469999999865


Q ss_pred             C-C-CC---CCCccEEEecccccCCCCHHHHHHHHHHhhcCCC
Q 020988          231 L-P-FA---SGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLS  268 (319)
Q Consensus       231 l-p-~~---~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~  268 (319)
                      . + +.   .++||+|++.....   +....++++.++|+|||
T Consensus       122 ~~~~~~~~~~~~fD~v~~d~~~~---~~~~~l~~~~~~L~pgG  161 (223)
T 3duw_A          122 SLQQIENEKYEPFDFIFIDADKQ---NNPAYFEWALKLSRPGT  161 (223)
T ss_dssp             HHHHHHHTTCCCCSEEEECSCGG---GHHHHHHHHHHTCCTTC
T ss_pred             HHHHHHhcCCCCcCEEEEcCCcH---HHHHHHHHHHHhcCCCc
Confidence            3 2 11   26799999876533   44678889999999987

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.35  E-value=4.3e-12  Score=110.16  Aligned_cols=101  Identities=9%  Similarity=0.031  Sum_probs=79.2

Q ss_pred             CCeEEEEcCCcChHHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHhhcCccCC-CCeEEEEcCCCCC-C-CCCCCccEEE
Q 020988          167 GGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILT-SNLALVRADVCRL-P-FASGFVDAVH  242 (319)
Q Consensus       167 ~~~VLDiGcG~G~~~~~l~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~-~~i~~~~~d~~~l-p-~~~~~fD~V~  242 (319)
                      +.+|||||||+|..+..+++.. +..+|+++|+++.+++.|+++++..+  .. .+++++.+|+.+. + +.+++||+|+
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g--~~~~~i~~~~gda~~~l~~~~~~~fD~V~  134 (221)
T 3dr5_A           57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAG--YSPSRVRFLLSRPLDVMSRLANDSYQLVF  134 (221)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTT--CCGGGEEEECSCHHHHGGGSCTTCEEEEE
T ss_pred             CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCcCcEEEEEcCHHHHHHHhcCCCcCeEE
Confidence            3499999999999999999864 36799999999999999999998753  22 4799999998664 2 3368999999


Q ss_pred             ecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          243 AGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       243 ~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      +....   .+....++++.++||||   |.+++
T Consensus       135 ~d~~~---~~~~~~l~~~~~~LkpG---G~lv~  161 (221)
T 3dr5_A          135 GQVSP---MDLKALVDAAWPLLRRG---GALVL  161 (221)
T ss_dssp             ECCCT---TTHHHHHHHHHHHEEEE---EEEEE
T ss_pred             EcCcH---HHHHHHHHHHHHHcCCC---cEEEE
Confidence            86543   35566788888887765   55555

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.35  E-value=3.6e-12  Score=109.42  Aligned_cols=88  Identities=11%  Similarity=0.144  Sum_probs=74.5

Q ss_pred             ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (319)
                      ..++.+|||||||+|.++..+.     .+++|+|+|+.                  ++.++++|+.++++++++||+|++
T Consensus        65 ~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~------------------~~~~~~~d~~~~~~~~~~fD~v~~  121 (215)
T 2zfu_A           65 RPASLVVADFGCGDCRLASSIR-----NPVHCFDLASL------------------DPRVTVCDMAQVPLEDESVDVAVF  121 (215)
T ss_dssp             SCTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS------------------STTEEESCTTSCSCCTTCEEEEEE
T ss_pred             cCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC------------------CceEEEeccccCCCCCCCEeEEEE
Confidence            4567899999999999988772     38999999986                  345789999999988899999999


Q ss_pred             cccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          244 GAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       244 ~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      ..++|| .++..+++++.++|+|+|...+..+
T Consensus       122 ~~~l~~-~~~~~~l~~~~~~L~~gG~l~i~~~  152 (215)
T 2zfu_A          122 CLSLMG-TNIRDFLEEANRVLKPGGLLKVAEV  152 (215)
T ss_dssp             ESCCCS-SCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             ehhccc-cCHHHHHHHHHHhCCCCeEEEEEEc
Confidence            999975 8999999999999998776655443

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.35  E-value=3.3e-12  Score=119.25  Aligned_cols=99  Identities=13%  Similarity=0.177  Sum_probs=83.8

Q ss_pred             ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (319)
                      ..+..+|||||||+|.++..+++..+..+++++|+ +.+++.+++         ..+++++.+|+.+ |++++  |+|++
T Consensus       201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~-~~p~~--D~v~~  267 (368)
T 3reo_A          201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPA---------FSGVEHLGGDMFD-GVPKG--DAIFI  267 (368)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC---------CTTEEEEECCTTT-CCCCC--SEEEE
T ss_pred             ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhh---------cCCCEEEecCCCC-CCCCC--CEEEE
Confidence            34568999999999999999999988889999999 888876653         2589999999987 66654  99999


Q ss_pred             cccccCCCCHH--HHHHHHHHhhcCCCeeEEEEe
Q 020988          244 GAALHCWPSPS--NAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       244 ~~vl~h~~d~~--~~l~el~rvlk~g~~~g~~~~  275 (319)
                      .+++||+++..  ..+++++++|+|+|...+..+
T Consensus       268 ~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  301 (368)
T 3reo_A          268 KWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEY  301 (368)
T ss_dssp             ESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred             echhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence            99999998765  679999999999987666544

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.34  E-value=3e-12  Score=112.86  Aligned_cols=106  Identities=18%  Similarity=0.116  Sum_probs=81.0

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhh--CCCCeEEEEeCCHHHHHHHHHHHhhc---CccCCCC-------------------
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKS--GTYSGVVALDFSENMLRQCYDFIKQD---NTILTSN-------------------  220 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~--g~~~~v~gvD~s~~~l~~a~~~~~~~---~~~~~~~-------------------  220 (319)
                      .++.+|||+|||+|.++..+++.  .+..+|+|+|+|+.+++.|++++...   +.  ..+                   
T Consensus        50 ~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  127 (250)
T 1o9g_A           50 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGL--TARELERREQSERFGKPSYLEA  127 (250)
T ss_dssp             CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHH--HHHHHHHHHHHHHHCCHHHHHH
T ss_pred             CCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccc--cccchhhhhhhhhcccccchhh
Confidence            35679999999999999999887  44458999999999999999877542   10  001                   


Q ss_pred             ------eE-------------EEEcCCCCCCC-----CCCCccEEEecccccCCCC---------HHHHHHHHHHhhcCC
Q 020988          221 ------LA-------------LVRADVCRLPF-----ASGFVDAVHAGAALHCWPS---------PSNAASVFSSSYSLL  267 (319)
Q Consensus       221 ------i~-------------~~~~d~~~lp~-----~~~~fD~V~~~~vl~h~~d---------~~~~l~el~rvlk~g  267 (319)
                            ++             ++++|+.+...     ..++||+|+++..+.+..+         ...+++++.++|+|+
T Consensus       128 ~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  207 (250)
T 1o9g_A          128 AQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAH  207 (250)
T ss_dssp             HHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTT
T ss_pred             hhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCC
Confidence                  55             99999887431     3458999999876665543         347889999999999


Q ss_pred             CeeEE
Q 020988          268 SICYL  272 (319)
Q Consensus       268 ~~~g~  272 (319)
                      |...+
T Consensus       208 G~l~~  212 (250)
T 1o9g_A          208 AVIAV  212 (250)
T ss_dssp             CEEEE
T ss_pred             cEEEE
Confidence            87765

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.34  E-value=3.6e-12  Score=110.66  Aligned_cols=109  Identities=20%  Similarity=0.323  Sum_probs=81.8

Q ss_pred             HHHHHh--hccCCCeEEEEcCCcChHHHHHHhhCC------CCeEEEEeCCHHHHHHHHHHHhhcCc--cCCCCeEEEEc
Q 020988          157 MAQEYF--KSAQGGLLVDVSCGSGLFSRKFAKSGT------YSGVVALDFSENMLRQCYDFIKQDNT--ILTSNLALVRA  226 (319)
Q Consensus       157 ~l~~~l--~~~~~~~VLDiGcG~G~~~~~l~~~g~------~~~v~gvD~s~~~l~~a~~~~~~~~~--~~~~~i~~~~~  226 (319)
                      .+.+.+  ...++.+|||||||+|.++..+++...      ..+|+++|+++.+++.|++++...+.  ....++.++.+
T Consensus        73 ~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~  152 (227)
T 1r18_A           73 FALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEG  152 (227)
T ss_dssp             HHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEES
T ss_pred             HHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEEC
Confidence            334444  356788999999999999999988532      24899999999999999998765310  00247999999


Q ss_pred             CCCCCCCCC-CCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEE
Q 020988          227 DVCRLPFAS-GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYL  272 (319)
Q Consensus       227 d~~~lp~~~-~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~  272 (319)
                      |+.. ++++ ++||+|++..+++|++      +++.++|||+|...+
T Consensus       153 d~~~-~~~~~~~fD~I~~~~~~~~~~------~~~~~~LkpgG~lvi  192 (227)
T 1r18_A          153 DGRK-GYPPNAPYNAIHVGAAAPDTP------TELINQLASGGRLIV  192 (227)
T ss_dssp             CGGG-CCGGGCSEEEEEECSCBSSCC------HHHHHTEEEEEEEEE
T ss_pred             Cccc-CCCcCCCccEEEECCchHHHH------HHHHHHhcCCCEEEE
Confidence            9877 4444 7899999999999985      567777776654433

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.34  E-value=5.3e-12  Score=117.67  Aligned_cols=99  Identities=20%  Similarity=0.214  Sum_probs=84.0

Q ss_pred             ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (319)
                      ..+..+|||||||+|.++..+++..+..+++++|+ +.+++.+++         ..+++++.+|+.+ |++++  |+|++
T Consensus       199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~D~~~-~~p~~--D~v~~  265 (364)
T 3p9c_A          199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ---------FPGVTHVGGDMFK-EVPSG--DTILM  265 (364)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC---------CTTEEEEECCTTT-CCCCC--SEEEE
T ss_pred             ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh---------cCCeEEEeCCcCC-CCCCC--CEEEe
Confidence            45678999999999999999999988889999999 888876653         2589999999987 77654  99999


Q ss_pred             cccccCCCCHH--HHHHHHHHhhcCCCeeEEEEe
Q 020988          244 GAALHCWPSPS--NAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       244 ~~vl~h~~d~~--~~l~el~rvlk~g~~~g~~~~  275 (319)
                      .+++||+++..  ..+++++++|||+|...+..+
T Consensus       266 ~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~  299 (364)
T 3p9c_A          266 KWILHDWSDQHCATLLKNCYDALPAHGKVVLVQC  299 (364)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred             hHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence            99999997654  779999999999987766544

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.34  E-value=7.3e-12  Score=112.08  Aligned_cols=104  Identities=17%  Similarity=0.126  Sum_probs=85.3

Q ss_pred             ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (319)
                      ..++.+|||+|||+|.++..+++.++..+|+|+|+++.+++.|+++++.++   ..++.++.+|+.+.+. .++||+|++
T Consensus       117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~---l~~~~~~~~d~~~~~~-~~~~D~Vi~  192 (272)
T 3a27_A          117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNK---LNNVIPILADNRDVEL-KDVADRVIM  192 (272)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTT---CSSEEEEESCGGGCCC-TTCEEEEEE
T ss_pred             cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCCEEEEECChHHcCc-cCCceEEEE
Confidence            456789999999999999999998666799999999999999999987753   4578999999988744 578999998


Q ss_pred             cccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          244 GAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       244 ~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      ....    +....+.++.++++|+|...+..+
T Consensus       193 d~p~----~~~~~l~~~~~~LkpgG~l~~s~~  220 (272)
T 3a27_A          193 GYVH----KTHKFLDKTFEFLKDRGVIHYHET  220 (272)
T ss_dssp             CCCS----SGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred             CCcc----cHHHHHHHHHHHcCCCCEEEEEEc
Confidence            7653    566778888899888765554433

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.33  E-value=9.7e-12  Score=107.77  Aligned_cols=102  Identities=14%  Similarity=0.153  Sum_probs=81.4

Q ss_pred             ccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC---CCCCCcc
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFVD  239 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~fD  239 (319)
                      ..++.+|||+|||+|.++..+++. ++..+|+|+|+|+.+++.++++.+.     ..++.++.+|+.+..   ...++||
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~~~D  145 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE-----RRNIVPILGDATKPEEYRALVPKVD  145 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS-----CTTEEEEECCTTCGGGGTTTCCCEE
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhc-----cCCCEEEEccCCCcchhhcccCCce
Confidence            457889999999999999999987 4556999999999999999988764     268999999998732   1236899


Q ss_pred             EEEecccccCCCCHH-HHHHHHHHhhcCCCeeEEE
Q 020988          240 AVHAGAALHCWPSPS-NAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       240 ~V~~~~vl~h~~d~~-~~l~el~rvlk~g~~~g~~  273 (319)
                      +|++...   .++.. .+++++.++|||+|.+.+.
T Consensus       146 ~v~~~~~---~~~~~~~~l~~~~~~LkpgG~l~~~  177 (227)
T 1g8a_A          146 VIFEDVA---QPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             EEEECCC---STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEECCC---CHhHHHHHHHHHHHhcCCCCEEEEE
Confidence            9998654   23443 4489999999998877666

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.33  E-value=7.2e-12  Score=114.51  Aligned_cols=115  Identities=14%  Similarity=0.057  Sum_probs=86.6

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (319)
                      ...+...+...++.+|||+|||+|..+..+++... ..+|+|+|+|+.+++.++++++..+   ..++.++.+|+..++.
T Consensus       107 s~l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g---~~~v~~~~~D~~~~~~  183 (315)
T 1ixk_A          107 SMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLG---VLNVILFHSSSLHIGE  183 (315)
T ss_dssp             HHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHT---CCSEEEESSCGGGGGG
T ss_pred             HHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhC---CCeEEEEECChhhccc
Confidence            34455666778889999999999999999998743 3689999999999999999987753   3579999999988765


Q ss_pred             CCCCccEEEec------ccccCCCCH----------------HHHHHHHHHhhcCCCeeEE
Q 020988          234 ASGFVDAVHAG------AALHCWPSP----------------SNAASVFSSSYSLLSICYL  272 (319)
Q Consensus       234 ~~~~fD~V~~~------~vl~h~~d~----------------~~~l~el~rvlk~g~~~g~  272 (319)
                      .+++||+|++.      +++.+.++.                ..+++++.++|||||.+..
T Consensus       184 ~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~  244 (315)
T 1ixk_A          184 LNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVY  244 (315)
T ss_dssp             GCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence            56789999983      345544331                3667777788777665533

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.32  E-value=9.1e-12  Score=116.11  Aligned_cols=101  Identities=20%  Similarity=0.263  Sum_probs=83.2

Q ss_pred             ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (319)
                      ..++++|||||||+|.++..+++.|. .+|+|+|.|+ +++.|++.++.++  ...+|+++.+|++++.++ ++||+|++
T Consensus        81 ~~~~k~VLDvG~GtGiLs~~Aa~aGA-~~V~ave~s~-~~~~a~~~~~~n~--~~~~i~~i~~~~~~~~lp-e~~Dvivs  155 (376)
T 4hc4_A           81 ALRGKTVLDVGAGTGILSIFCAQAGA-RRVYAVEASA-IWQQAREVVRFNG--LEDRVHVLPGPVETVELP-EQVDAIVS  155 (376)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECST-THHHHHHHHHHTT--CTTTEEEEESCTTTCCCS-SCEEEEEC
T ss_pred             hcCCCEEEEeCCCccHHHHHHHHhCC-CEEEEEeChH-HHHHHHHHHHHcC--CCceEEEEeeeeeeecCC-ccccEEEe
Confidence            34688999999999999999888874 5899999996 8899999887764  456799999999998876 68999998


Q ss_pred             ---cccccCCCCHHHHHHHHHHhhcCCCe
Q 020988          244 ---GAALHCWPSPSNAASVFSSSYSLLSI  269 (319)
Q Consensus       244 ---~~vl~h~~d~~~~l~el~rvlk~g~~  269 (319)
                         ...+.+-.....++....|+|||+|.
T Consensus       156 E~~~~~l~~e~~l~~~l~a~~r~Lkp~G~  184 (376)
T 4hc4_A          156 EWMGYGLLHESMLSSVLHARTKWLKEGGL  184 (376)
T ss_dssp             CCCBTTBTTTCSHHHHHHHHHHHEEEEEE
T ss_pred             ecccccccccchhhhHHHHHHhhCCCCce
Confidence               45666666777778888888887653

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.32  E-value=3.6e-12  Score=110.24  Aligned_cols=111  Identities=9%  Similarity=0.006  Sum_probs=84.6

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-C
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P  232 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p  232 (319)
                      ...+..++...++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.|+++++..+  ...+++++.+|+.+. +
T Consensus        53 ~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~  130 (225)
T 3tr6_A           53 AQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAG--LSDKIGLRLSPAKDTLA  130 (225)
T ss_dssp             HHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEESCHHHHHH
T ss_pred             HHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCC--CCCceEEEeCCHHHHHH
Confidence            44555555556788999999999999999998754 5699999999999999999987753  234699999998553 2


Q ss_pred             -CCC----CCccEEEecccccCCCCHHHHHHHHHHhhcCCCee
Q 020988          233 -FAS----GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSIC  270 (319)
Q Consensus       233 -~~~----~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~  270 (319)
                       +..    ++||+|++...   ..+....++++.++|+|||.+
T Consensus       131 ~~~~~~~~~~fD~v~~~~~---~~~~~~~l~~~~~~L~pgG~l  170 (225)
T 3tr6_A          131 ELIHAGQAWQYDLIYIDAD---KANTDLYYEESLKLLREGGLI  170 (225)
T ss_dssp             HHHTTTCTTCEEEEEECSC---GGGHHHHHHHHHHHEEEEEEE
T ss_pred             HhhhccCCCCccEEEECCC---HHHHHHHHHHHHHhcCCCcEE
Confidence             111    78999997554   234667788888888876543

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.31  E-value=2.5e-11  Score=103.05  Aligned_cols=89  Identities=15%  Similarity=0.158  Sum_probs=70.3

Q ss_pred             ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (319)
                      ..++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.|+++..        +++++++|+.+++   ++||+|++
T Consensus        49 ~~~~~~vlD~gcG~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~--------~~~~~~~d~~~~~---~~~D~v~~  116 (200)
T 1ne2_A           49 NIGGRSVIDAGTGNGILACGSYLLG-AESVTAFDIDPDAIETAKRNCG--------GVNFMVADVSEIS---GKYDTWIM  116 (200)
T ss_dssp             SSBTSEEEEETCTTCHHHHHHHHTT-BSEEEEEESCHHHHHHHHHHCT--------TSEEEECCGGGCC---CCEEEEEE
T ss_pred             CCCCCEEEEEeCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHhcC--------CCEEEECcHHHCC---CCeeEEEE
Confidence            3467899999999999999998874 3479999999999999999752        7899999998875   68999999


Q ss_pred             cccccCCCCH--HHHHHHHHHhh
Q 020988          244 GAALHCWPSP--SNAASVFSSSY  264 (319)
Q Consensus       244 ~~vl~h~~d~--~~~l~el~rvl  264 (319)
                      +..++|+.+.  ...++++.+++
T Consensus       117 ~~p~~~~~~~~~~~~l~~~~~~~  139 (200)
T 1ne2_A          117 NPPFGSVVKHSDRAFIDKAFETS  139 (200)
T ss_dssp             CCCC-------CHHHHHHHHHHE
T ss_pred             CCCchhccCchhHHHHHHHHHhc
Confidence            9999998652  35667777765

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.31  E-value=3e-12  Score=108.66  Aligned_cols=99  Identities=9%  Similarity=0.196  Sum_probs=76.6

Q ss_pred             ccCCCeEEEEcCCcChHHHHHHhhCC--CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC---------
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFAKSGT--YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---------  232 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~~~g~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---------  232 (319)
                      ..++.+|||+|||+|.++..+++..+  ..+|+|+|+|+..              ...++.++++|+.+.+         
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~--------------~~~~v~~~~~d~~~~~~~~~~~~~~   85 (201)
T 2plw_A           20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD--------------PIPNVYFIQGEIGKDNMNNIKNINY   85 (201)
T ss_dssp             CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC--------------CCTTCEEEECCTTTTSSCCC-----
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC--------------CCCCceEEEccccchhhhhhccccc
Confidence            35678999999999999999998865  5799999999831              1347899999998876         


Q ss_pred             ----------------CCCCCccEEEecccccCCC----CHH-------HHHHHHHHhhcCCCeeEEEEee
Q 020988          233 ----------------FASGFVDAVHAGAALHCWP----SPS-------NAASVFSSSYSLLSICYLLQFR  276 (319)
Q Consensus       233 ----------------~~~~~fD~V~~~~vl~h~~----d~~-------~~l~el~rvlk~g~~~g~~~~~  276 (319)
                                      +++++||+|++..++++..    +..       .+++++.++|||+|.+.+.++.
T Consensus        86 i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~  156 (201)
T 2plw_A           86 IDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYL  156 (201)
T ss_dssp             ------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeC
Confidence                            5667999999988877642    222       2677888888888776655553

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.31  E-value=8.8e-12  Score=109.97  Aligned_cols=112  Identities=10%  Similarity=0.031  Sum_probs=88.1

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-C
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P  232 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p  232 (319)
                      ...+..++...++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.|+++++..+  ...+++++.+|+.+. +
T Consensus        68 ~~ll~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g--~~~~i~~~~gda~~~l~  145 (247)
T 1sui_A           68 GQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAG--VDHKIDFREGPALPVLD  145 (247)
T ss_dssp             HHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTT--CGGGEEEEESCHHHHHH
T ss_pred             HHHHHHHHHhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCCeEEEECCHHHHHH
Confidence            34444455556778999999999999999998854 5699999999999999999987653  235799999998653 3


Q ss_pred             -C-----CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeE
Q 020988          233 -F-----ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICY  271 (319)
Q Consensus       233 -~-----~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g  271 (319)
                       +     .+++||+|++...   ..+....++++.++|||||...
T Consensus       146 ~l~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv  187 (247)
T 1sui_A          146 EMIKDEKNHGSYDFIFVDAD---KDNYLNYHKRLIDLVKVGGVIG  187 (247)
T ss_dssp             HHHHSGGGTTCBSEEEECSC---STTHHHHHHHHHHHBCTTCCEE
T ss_pred             HHHhccCCCCCEEEEEEcCc---hHHHHHHHHHHHHhCCCCeEEE
Confidence             2     1578999998754   3466788999999999998654

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.30  E-value=3.7e-12  Score=112.42  Aligned_cols=103  Identities=10%  Similarity=0.018  Sum_probs=72.9

Q ss_pred             CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC---CCC---CCCcc
Q 020988          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL---PFA---SGFVD  239 (319)
Q Consensus       166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l---p~~---~~~fD  239 (319)
                      ++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.|++++...+  ...+++++++|+.+.   +++   +++||
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  142 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNN--LSDLIKVVKVPQKTLLMDALKEESEIIYD  142 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECCTTCSSTTTSTTCCSCCBS
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcC--CCccEEEEEcchhhhhhhhhhcccCCccc
Confidence            5679999999999999888877544699999999999999999987653  234599999998762   444   26899


Q ss_pred             EEEecccccCCC-C--------------HHHHHHHHHHhhcCCCee
Q 020988          240 AVHAGAALHCWP-S--------------PSNAASVFSSSYSLLSIC  270 (319)
Q Consensus       240 ~V~~~~vl~h~~-d--------------~~~~l~el~rvlk~g~~~  270 (319)
                      +|+++..+++.. +              ....+.++.++|||+|..
T Consensus       143 ~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l  188 (254)
T 2h00_A          143 FCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGEL  188 (254)
T ss_dssp             EEEECCCCC-------------------------CTTTTHHHHTHH
T ss_pred             EEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEE
Confidence            999986554432 0              112345666677776643

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.30  E-value=1.2e-12  Score=115.26  Aligned_cols=112  Identities=8%  Similarity=0.029  Sum_probs=86.0

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-
Q 020988          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-  231 (319)
Q Consensus       154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-  231 (319)
                      ....+..++...++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.|+++++..+  ...+++++.+|+.+. 
T Consensus        48 ~~~~l~~l~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g--~~~~i~~~~gda~~~l  125 (242)
T 3r3h_A           48 QAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAK--QEHKIKLRLGPALDTL  125 (242)
T ss_dssp             HHHHHHHHHHHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTT--CTTTEEEEESCHHHHH
T ss_pred             HHHHHHHHHhhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEcCHHHHH
Confidence            345555555556788999999999999999998753 5799999999999999999987753  235899999998664 


Q ss_pred             CCC-----CCCccEEEecccccCCCCHHHHHHHHHHhhcCCCee
Q 020988          232 PFA-----SGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSIC  270 (319)
Q Consensus       232 p~~-----~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~  270 (319)
                      +..     +++||+|++...   ..+....++++.++|+|||.+
T Consensus       126 ~~~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~l  166 (242)
T 3r3h_A          126 HSLLNEGGEHQFDFIFIDAD---KTNYLNYYELALKLVTPKGLI  166 (242)
T ss_dssp             HHHHHHHCSSCEEEEEEESC---GGGHHHHHHHHHHHEEEEEEE
T ss_pred             HHHhhccCCCCEeEEEEcCC---hHHhHHHHHHHHHhcCCCeEE
Confidence            211     478999998755   234566788888887776543

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.30  E-value=2.3e-11  Score=109.53  Aligned_cols=111  Identities=15%  Similarity=0.138  Sum_probs=82.8

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (319)
                      .+.+.+.+...++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|+++....+  ...+++++++|+.+. +.
T Consensus       112 v~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~--l~~~v~~~~~D~~~~-~~  187 (284)
T 1nv8_A          112 VELALELIRKYGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHG--VSDRFFVRKGEFLEP-FK  187 (284)
T ss_dssp             HHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTT--CTTSEEEEESSTTGG-GG
T ss_pred             HHHHHHHhcccCCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcC--CCCceEEEECcchhh-cc
Confidence            344445554446789999999999999999998 66799999999999999999987753  223599999999873 32


Q ss_pred             CCCc---cEEEec------------ccccCCCC--------HHHHHHHHH-HhhcCCCeeE
Q 020988          235 SGFV---DAVHAG------------AALHCWPS--------PSNAASVFS-SSYSLLSICY  271 (319)
Q Consensus       235 ~~~f---D~V~~~------------~vl~h~~d--------~~~~l~el~-rvlk~g~~~g  271 (319)
                       ++|   |+|+++            .+. |-+.        ....++++. +.++|+|.+.
T Consensus       188 -~~f~~~D~IvsnPPyi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~  246 (284)
T 1nv8_A          188 -EKFASIEMILSNPPYVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVL  246 (284)
T ss_dssp             -GGTTTCCEEEECCCCBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEE
T ss_pred             -cccCCCCEEEEcCCCCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEE
Confidence             578   999997            222 3322        225678888 8888776544

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.29  E-value=7.5e-12  Score=116.25  Aligned_cols=98  Identities=18%  Similarity=0.175  Sum_probs=83.2

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (319)
                      .+..+|||||||+|.++..+++..+..+++++|+ +.+++.+++         ..+++++.+|+.+ +++  .||+|++.
T Consensus       192 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~-~~~--~~D~v~~~  258 (358)
T 1zg3_A          192 EGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG---------NENLNFVGGDMFK-SIP--SADAVLLK  258 (358)
T ss_dssp             HTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC---------CSSEEEEECCTTT-CCC--CCSEEEEE
T ss_pred             cCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc---------CCCcEEEeCccCC-CCC--CceEEEEc
Confidence            4568999999999999999999988889999999 788876653         2469999999987 665  49999999


Q ss_pred             ccccCCCCHH--HHHHHHHHhhcC---CCeeEEEEe
Q 020988          245 AALHCWPSPS--NAASVFSSSYSL---LSICYLLQF  275 (319)
Q Consensus       245 ~vl~h~~d~~--~~l~el~rvlk~---g~~~g~~~~  275 (319)
                      +++||++|+.  ..+++++++++|   +|...+..+
T Consensus       259 ~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~  294 (358)
T 1zg3_A          259 WVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDI  294 (358)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEEC
T ss_pred             ccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence            9999999987  999999999999   776555443

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.29  E-value=4.3e-11  Score=104.44  Aligned_cols=104  Identities=14%  Similarity=0.087  Sum_probs=77.7

Q ss_pred             hccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC---CCCCCc
Q 020988          163 KSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFV  238 (319)
Q Consensus       163 ~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~f  238 (319)
                      ...++.+|||+|||+|.++..+++. ++..+|+|+|+|+.+++...+..+.     ..|+.++.+|+....   ...++|
T Consensus        73 ~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~-----r~nv~~i~~Da~~~~~~~~~~~~~  147 (232)
T 3id6_C           73 PIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQR-----RPNIFPLLADARFPQSYKSVVENV  147 (232)
T ss_dssp             SCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHH-----CTTEEEEECCTTCGGGTTTTCCCE
T ss_pred             CCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-----cCCeEEEEcccccchhhhccccce
Confidence            3678999999999999999999876 5567999999999987665544433     258999999997643   124689


Q ss_pred             cEEEecccccCCCCHHHHH-HHHHHhhcCCCeeEEEE
Q 020988          239 DAVHAGAALHCWPSPSNAA-SVFSSSYSLLSICYLLQ  274 (319)
Q Consensus       239 D~V~~~~vl~h~~d~~~~l-~el~rvlk~g~~~g~~~  274 (319)
                      |+|++..+.   ++....+ ..+.++|||||.+.+.+
T Consensus       148 D~I~~d~a~---~~~~~il~~~~~~~LkpGG~lvisi  181 (232)
T 3id6_C          148 DVLYVDIAQ---PDQTDIAIYNAKFFLKVNGDMLLVI  181 (232)
T ss_dssp             EEEEECCCC---TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEecCCC---hhHHHHHHHHHHHhCCCCeEEEEEE
Confidence            999997553   4555544 45566888887666554

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.29  E-value=2.1e-11  Score=117.58  Aligned_cols=111  Identities=17%  Similarity=0.177  Sum_probs=84.1

Q ss_pred             HHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCC
Q 020988          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (319)
Q Consensus       157 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~  236 (319)
                      .+.+.+...++.+|||||||+|.++..+++.+ ..+|+|+|+|+ +++.|+++++..+  ...+++++.+|+.+++++ +
T Consensus       149 ~il~~l~~~~~~~VLDiGcGtG~la~~la~~~-~~~V~gvD~s~-~l~~A~~~~~~~g--l~~~v~~~~~d~~~~~~~-~  223 (480)
T 3b3j_A          149 AILQNHTDFKDKIVLDVGCGSGILSFFAAQAG-ARKIYAVEAST-MAQHAEVLVKSNN--LTDRIVVIPGKVEEVSLP-E  223 (480)
T ss_dssp             HHHHTGGGTTTCEEEEESCSTTHHHHHHHHTT-CSEEEEEECHH-HHHHHHHHHHHTT--CTTTEEEEESCTTTCCCS-S
T ss_pred             HHHHhhhhcCCCEEEEecCcccHHHHHHHHcC-CCEEEEEEcHH-HHHHHHHHHHHcC--CCCcEEEEECchhhCccC-C
Confidence            34444455578899999999999999988863 46999999998 9999999887653  236899999999988765 5


Q ss_pred             CccEEEecccccCCCCH--HHHHHHHHHhhcCCCeeEEEEe
Q 020988          237 FVDAVHAGAALHCWPSP--SNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       237 ~fD~V~~~~vl~h~~d~--~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      +||+|++..+++|+.+.  ...+.++.++|||   +|.+++
T Consensus       224 ~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~Lkp---gG~li~  261 (480)
T 3b3j_A          224 QVDIIISEPMGYMLFNERMLESYLHAKKYLKP---SGNMFP  261 (480)
T ss_dssp             CEEEEECCCCHHHHTCHHHHHHHHHGGGGEEE---EEEEES
T ss_pred             CeEEEEEeCchHhcCcHHHHHHHHHHHHhcCC---CCEEEE
Confidence            89999998888887554  2344455555555   455544

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.29  E-value=1.2e-12  Score=109.02  Aligned_cols=87  Identities=8%  Similarity=0.019  Sum_probs=76.1

Q ss_pred             hccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC---CCCCcc
Q 020988          163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF---ASGFVD  239 (319)
Q Consensus       163 ~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~---~~~~fD  239 (319)
                      ...++.+|||||||.                +++|+|+.|++.|+++..       .+++++++|+.++++   ++++||
T Consensus         9 g~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~-------~~~~~~~~d~~~~~~~~~~~~~fD   65 (176)
T 2ld4_A            9 GISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTG-------NEGRVSVENIKQLLQSAHKESSFD   65 (176)
T ss_dssp             TCCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTT-------TTSEEEEEEGGGGGGGCCCSSCEE
T ss_pred             CCCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcc-------cCcEEEEechhcCccccCCCCCEe
Confidence            456789999999996                239999999999999863       258999999999887   788999


Q ss_pred             EEEecccccCC-CCHHHHHHHHHHhhcCCCeeEE
Q 020988          240 AVHAGAALHCW-PSPSNAASVFSSSYSLLSICYL  272 (319)
Q Consensus       240 ~V~~~~vl~h~-~d~~~~l~el~rvlk~g~~~g~  272 (319)
                      +|++..+++|+ +++..++++++|+|||||.+.+
T Consensus        66 ~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~   99 (176)
T 2ld4_A           66 IILSGLVPGSTTLHSAEILAEIARILRPGGCLFL   99 (176)
T ss_dssp             EEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEE
T ss_pred             EEEECChhhhcccCHHHHHHHHHHHCCCCEEEEE
Confidence            99999999999 9999999999999999876655

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.29  E-value=4e-11  Score=111.25  Aligned_cols=110  Identities=11%  Similarity=0.140  Sum_probs=90.9

Q ss_pred             HHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCcc
Q 020988          160 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVD  239 (319)
Q Consensus       160 ~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD  239 (319)
                      +.+......+|||||||+|.++..+++..|..+++..|. +.+++.|+++....   ...+++++.+|+.+.|.+  .+|
T Consensus       173 ~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~---~~~rv~~~~gD~~~~~~~--~~D  246 (353)
T 4a6d_A          173 TAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQ---EEEQIDFQEGDFFKDPLP--EAD  246 (353)
T ss_dssp             HSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC-----CCSEEEEESCTTTSCCC--CCS
T ss_pred             HhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhc---ccCceeeecCccccCCCC--Cce
Confidence            333445678999999999999999999999889999998 88999999887543   357899999999876654  579


Q ss_pred             EEEecccccCCCCHH--HHHHHHHHhhcCCCeeEEEEe
Q 020988          240 AVHAGAALHCWPSPS--NAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       240 ~V~~~~vl~h~~d~~--~~l~el~rvlk~g~~~g~~~~  275 (319)
                      +|++.++||+++|..  +.+++++++++|+|..-++..
T Consensus       247 ~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~  284 (353)
T 4a6d_A          247 LYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIES  284 (353)
T ss_dssp             EEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             EEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEe
Confidence            999999999998874  668999999999987665543

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.28  E-value=1.4e-11  Score=109.06  Aligned_cols=101  Identities=16%  Similarity=0.172  Sum_probs=81.2

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (319)
                      .++.+|||+|||+|.++..+++.++  +|+|+|+|+.+++.++++...++   .. +++..+|+.+. +++++||+|+++
T Consensus       119 ~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~---~~-v~~~~~d~~~~-~~~~~fD~Vv~n  191 (254)
T 2nxc_A          119 RPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNG---VR-PRFLEGSLEAA-LPFGPFDLLVAN  191 (254)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTT---CC-CEEEESCHHHH-GGGCCEEEEEEE
T ss_pred             CCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcC---Cc-EEEEECChhhc-CcCCCCCEEEEC
Confidence            5678999999999999999999877  99999999999999999987642   22 88999988662 345789999997


Q ss_pred             ccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          245 AALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       245 ~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      ...++   ....++++.++++|+|...+..+
T Consensus       192 ~~~~~---~~~~l~~~~~~LkpgG~lils~~  219 (254)
T 2nxc_A          192 LYAEL---HAALAPRYREALVPGGRALLTGI  219 (254)
T ss_dssp             CCHHH---HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CcHHH---HHHHHHHHHHHcCCCCEEEEEee
Confidence            66554   35778888899888776555433

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.28  E-value=8.2e-12  Score=114.94  Aligned_cols=116  Identities=10%  Similarity=0.077  Sum_probs=87.0

Q ss_pred             HHHHHHHhh-ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCC-CeEEEEcCCCCCC
Q 020988          155 FKMAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTS-NLALVRADVCRLP  232 (319)
Q Consensus       155 ~~~l~~~l~-~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~-~i~~~~~d~~~lp  232 (319)
                      .+.+.+.+. ..++.+|||+|||+|.++..+++.+.  +|+++|+|+.+++.|+++++..+  ... +++++++|+.++.
T Consensus       141 ~~~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~ga--~V~~VD~s~~al~~a~~n~~~~g--l~~~~v~~i~~D~~~~l  216 (332)
T 2igt_A          141 WEWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGA--EVTHVDASKKAIGWAKENQVLAG--LEQAPIRWICEDAMKFI  216 (332)
T ss_dssp             HHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHT--CTTSCEEEECSCHHHHH
T ss_pred             HHHHHHHHHhcCCCCcEEEcccccCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcC--CCccceEEEECcHHHHH
Confidence            344555553 34578999999999999999999876  99999999999999999987653  112 4899999987643


Q ss_pred             C----CCCCccEEEecc----------cccCCCCHHHHHHHHHHhhcCCCeeEEEE
Q 020988          233 F----ASGFVDAVHAGA----------ALHCWPSPSNAASVFSSSYSLLSICYLLQ  274 (319)
Q Consensus       233 ~----~~~~fD~V~~~~----------vl~h~~d~~~~l~el~rvlk~g~~~g~~~  274 (319)
                      .    .+++||+|++.-          ++++..+...+++++.++|+|+|.+.+..
T Consensus       217 ~~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~  272 (332)
T 2igt_A          217 QREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT  272 (332)
T ss_dssp             HHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred             HHHHhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEE
Confidence            1    146899999942          22334456678888999999998754443

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.27  E-value=6.1e-12  Score=114.43  Aligned_cols=109  Identities=13%  Similarity=0.081  Sum_probs=81.3

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhc-CccCCCCeEEEEcCCCCCCC--CCCCccEE
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVRADVCRLPF--ASGFVDAV  241 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~i~~~~~d~~~lp~--~~~~fD~V  241 (319)
                      .++.+|||||||+|.++..+++..+..+|+++|+|+.+++.|++++... .....++++++.+|+.+.+.  .+++||+|
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI  173 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence            4678999999999999999998755669999999999999999987421 01124689999999877643  36899999


Q ss_pred             EecccccCCCCH----HHHHHHHHHhhcCCCeeEEE
Q 020988          242 HAGAALHCWPSP----SNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       242 ~~~~vl~h~~d~----~~~l~el~rvlk~g~~~g~~  273 (319)
                      ++.....+.+..    ..+++++.++|+|+|.+.+.
T Consensus       174 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  209 (304)
T 3bwc_A          174 IIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQ  209 (304)
T ss_dssp             EEECC---------CCHHHHHHHHHHEEEEEEEEEE
T ss_pred             EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            997655543332    57788999998887765544

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.27  E-value=1.4e-11  Score=107.87  Aligned_cols=114  Identities=16%  Similarity=0.113  Sum_probs=86.4

Q ss_pred             HHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC
Q 020988          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (319)
Q Consensus       153 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (319)
                      .....+...+...++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++...+  ...++.++.+|+.+.
T Consensus        47 ~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g--~~~~v~~~~~d~~~~  124 (239)
T 2hnk_A           47 EEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENG--LENKIFLKLGSALET  124 (239)
T ss_dssp             HHHHHHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTT--CGGGEEEEESCHHHH
T ss_pred             HHHHHHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCCEEEEECCHHHH
Confidence            3345566666666789999999999999999998854 5699999999999999999987643  123599999987552


Q ss_pred             -C--------------CCC--CCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeE
Q 020988          232 -P--------------FAS--GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICY  271 (319)
Q Consensus       232 -p--------------~~~--~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g  271 (319)
                       +              +++  ++||+|++....+   +....++++.++|+|+|...
T Consensus       125 ~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~---~~~~~l~~~~~~L~pgG~lv  178 (239)
T 2hnk_A          125 LQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKE---NYPNYYPLILKLLKPGGLLI  178 (239)
T ss_dssp             HHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGG---GHHHHHHHHHHHEEEEEEEE
T ss_pred             HHHHHhhcccccccccccCCCCCcCEEEEeCCHH---HHHHHHHHHHHHcCCCeEEE
Confidence             2              222  7899999986544   44577888888887765444

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.26  E-value=1.8e-11  Score=114.40  Aligned_cols=110  Identities=13%  Similarity=0.092  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC
Q 020988          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (319)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (319)
                      ......+.... ..++.+|||+|||+|.++..++..+...+|+|+|+|+.+++.|++++...+  ...+++++++|+.++
T Consensus       204 ~~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~g--l~~~i~~~~~D~~~~  280 (373)
T 3tm4_A          204 ASIANAMIELA-ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAG--VLDKIKFIQGDATQL  280 (373)
T ss_dssp             HHHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTT--CGGGCEEEECCGGGG
T ss_pred             HHHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcC--CCCceEEEECChhhC
Confidence            33445555555 677899999999999999999998766689999999999999999987753  225799999999999


Q ss_pred             CCCCCCccEEEecccccCC----CCH----HHHHHHHHHhh
Q 020988          232 PFASGFVDAVHAGAALHCW----PSP----SNAASVFSSSY  264 (319)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~----~d~----~~~l~el~rvl  264 (319)
                      ++++++||+|+++..+..-    .+.    ..+++++.+++
T Consensus       281 ~~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l  321 (373)
T 3tm4_A          281 SQYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL  321 (373)
T ss_dssp             GGTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE
T ss_pred             CcccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc
Confidence            8878899999997543321    112    45567777776

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.26  E-value=7.9e-12  Score=112.46  Aligned_cols=97  Identities=12%  Similarity=0.111  Sum_probs=73.6

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEE-EcCCCCCC---CCCCCccE
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV-RADVCRLP---FASGFVDA  240 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~-~~d~~~lp---~~~~~fD~  240 (319)
                      .++.+|||||||||.++..+++.+ ..+|+|+|+|++|++.+.++        ..++... ..++..++   ++..+||+
T Consensus        84 ~~g~~vLDiGcGTG~~t~~L~~~g-a~~V~aVDvs~~mL~~a~r~--------~~rv~~~~~~ni~~l~~~~l~~~~fD~  154 (291)
T 3hp7_A           84 VEDMITIDIGASTGGFTDVMLQNG-AKLVYAVDVGTNQLVWKLRQ--------DDRVRSMEQYNFRYAEPVDFTEGLPSF  154 (291)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTT-CSEEEEECSSSSCSCHHHHT--------CTTEEEECSCCGGGCCGGGCTTCCCSE
T ss_pred             ccccEEEecCCCccHHHHHHHhCC-CCEEEEEECCHHHHHHHHHh--------CcccceecccCceecchhhCCCCCCCE
Confidence            467799999999999999998885 35899999999999986543        1233322 23444333   33456999


Q ss_pred             EEecccccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988          241 VHAGAALHCWPSPSNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       241 V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~  273 (319)
                      |++..+++++   ..++.++.|+|+|+|.+-++
T Consensus       155 v~~d~sf~sl---~~vL~e~~rvLkpGG~lv~l  184 (291)
T 3hp7_A          155 ASIDVSFISL---NLILPALAKILVDGGQVVAL  184 (291)
T ss_dssp             EEECCSSSCG---GGTHHHHHHHSCTTCEEEEE
T ss_pred             EEEEeeHhhH---HHHHHHHHHHcCcCCEEEEE
Confidence            9998887754   67899999999999988776

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.25  E-value=8.7e-11  Score=109.78  Aligned_cols=106  Identities=11%  Similarity=0.014  Sum_probs=86.4

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC-CCC-CCCCccEEE
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPF-ASGFVDAVH  242 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~-~~~~fD~V~  242 (319)
                      .++.+|||+| |+|.++..+++.++..+|+|+|+|+.+++.|+++++..+   ..+++++.+|+.+ +|. .+++||+|+
T Consensus       171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g---~~~v~~~~~D~~~~l~~~~~~~fD~Vi  246 (373)
T 2qm3_A          171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIG---YEDIEIFTFDLRKPLPDYALHKFDTFI  246 (373)
T ss_dssp             STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHT---CCCEEEECCCTTSCCCTTTSSCBSEEE
T ss_pred             CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCEEEEEChhhhhchhhccCCccEEE
Confidence            3678999999 999999999988776799999999999999999988753   2379999999988 764 356899999


Q ss_pred             ecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          243 AGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       243 ~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      +...+++. ....+++++.++|||+|...++.+
T Consensus       247 ~~~p~~~~-~~~~~l~~~~~~LkpgG~~~~~~~  278 (373)
T 2qm3_A          247 TDPPETLE-AIRAFVGRGIATLKGPRCAGYFGI  278 (373)
T ss_dssp             ECCCSSHH-HHHHHHHHHHHTBCSTTCEEEEEE
T ss_pred             ECCCCchH-HHHHHHHHHHHHcccCCeEEEEEE
Confidence            98655433 246788999999999985444444

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.25  E-value=1.9e-11  Score=106.60  Aligned_cols=113  Identities=9%  Similarity=0.010  Sum_probs=83.8

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC---
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR---  230 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~---  230 (319)
                      .+.+..++...++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++...+  ...+++++.+|+.+   
T Consensus        61 ~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g--~~~~i~~~~~d~~~~l~  138 (232)
T 3cbg_A           61 AQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAG--VAEKISLRLGPALATLE  138 (232)
T ss_dssp             HHHHHHHHHHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHT--CGGGEEEEESCHHHHHH
T ss_pred             HHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEcCHHHHHH
Confidence            34444445555678999999999999999998754 5699999999999999999887643  22469999999744   


Q ss_pred             -CCCCC--CCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          231 -LPFAS--GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       231 -lp~~~--~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                       ++..+  ++||+|++....   .+....++++.++|+|+|   .+++
T Consensus       139 ~l~~~~~~~~fD~V~~d~~~---~~~~~~l~~~~~~LkpgG---~lv~  180 (232)
T 3cbg_A          139 QLTQGKPLPEFDLIFIDADK---RNYPRYYEIGLNLLRRGG---LMVI  180 (232)
T ss_dssp             HHHTSSSCCCEEEEEECSCG---GGHHHHHHHHHHTEEEEE---EEEE
T ss_pred             HHHhcCCCCCcCEEEECCCH---HHHHHHHHHHHHHcCCCe---EEEE
Confidence             33333  789999987552   345677788877777654   5555

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.25  E-value=6e-11  Score=113.63  Aligned_cols=115  Identities=14%  Similarity=0.129  Sum_probs=87.7

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCC-CeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC
Q 020988          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (319)
Q Consensus       154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (319)
                      ....+...+...++.+|||+|||+|..+..+++..++ .+|+++|+++.+++.++++++..+   ..++.++.+|+..++
T Consensus       247 ~s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g---~~~v~~~~~D~~~~~  323 (450)
T 2yxl_A          247 ASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMG---IKIVKPLVKDARKAP  323 (450)
T ss_dssp             HHHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTT---CCSEEEECSCTTCCS
T ss_pred             hhHHHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC---CCcEEEEEcChhhcc
Confidence            3445556677788899999999999999999987544 699999999999999999987753   457999999998876


Q ss_pred             --CCCCCccEEEe------cccccCCCCH----------------HHHHHHHHHhhcCCCeeE
Q 020988          233 --FASGFVDAVHA------GAALHCWPSP----------------SNAASVFSSSYSLLSICY  271 (319)
Q Consensus       233 --~~~~~fD~V~~------~~vl~h~~d~----------------~~~l~el~rvlk~g~~~g  271 (319)
                        +.+++||+|++      .+++++.++.                ...++++.++|||||.+.
T Consensus       324 ~~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lv  386 (450)
T 2yxl_A          324 EIIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLL  386 (450)
T ss_dssp             SSSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             hhhccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEE
Confidence              55578999996      3466666554                345566666665554433

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.24  E-value=2.3e-11  Score=105.36  Aligned_cols=111  Identities=12%  Similarity=-0.010  Sum_probs=84.6

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-C
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P  232 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p  232 (319)
                      ...+.......++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.|+++++..+  ...+++++.+|+.+. +
T Consensus        58 ~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g--~~~~i~~~~~d~~~~~~  135 (229)
T 2avd_A           58 AQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAE--AEHKIDLRLKPALETLD  135 (229)
T ss_dssp             HHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTT--CTTTEEEEESCHHHHHH
T ss_pred             HHHHHHHHHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCC--CCCeEEEEEcCHHHHHH
Confidence            44555555556788999999999999999998754 5699999999999999999987653  235899999998553 1


Q ss_pred             -CCC----CCccEEEecccccCCCCHHHHHHHHHHhhcCCCee
Q 020988          233 -FAS----GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSIC  270 (319)
Q Consensus       233 -~~~----~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~  270 (319)
                       +.+    ++||+|++...   ..+....++++.++++|+|..
T Consensus       136 ~~~~~~~~~~~D~v~~d~~---~~~~~~~l~~~~~~L~pgG~l  175 (229)
T 2avd_A          136 ELLAAGEAGTFDVAVVDAD---KENCSAYYERCLQLLRPGGIL  175 (229)
T ss_dssp             HHHHTTCTTCEEEEEECSC---STTHHHHHHHHHHHEEEEEEE
T ss_pred             HHHhcCCCCCccEEEECCC---HHHHHHHHHHHHHHcCCCeEE
Confidence             211    68999999654   335567788888888776543

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.24  E-value=2.1e-10  Score=97.75  Aligned_cols=93  Identities=13%  Similarity=0.157  Sum_probs=76.1

Q ss_pred             ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (319)
                      ..++.+|||+|||+|.++..+++.+. .+|+|+|+|+.+++.+++++...+    .+++++.+|+.+++   ++||+|++
T Consensus        47 ~~~~~~vlD~g~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~---~~~D~v~~  118 (207)
T 1wy7_A           47 DIEGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFK----GKFKVFIGDVSEFN---SRVDIVIM  118 (207)
T ss_dssp             SSTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGT----TSEEEEESCGGGCC---CCCSEEEE
T ss_pred             CCCcCEEEEeeCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHcC----CCEEEEECchHHcC---CCCCEEEE
Confidence            45688999999999999999998853 479999999999999999987642    27999999998875   48999999


Q ss_pred             cccccCCCC--HHHHHHHHHHhh
Q 020988          244 GAALHCWPS--PSNAASVFSSSY  264 (319)
Q Consensus       244 ~~vl~h~~d--~~~~l~el~rvl  264 (319)
                      ...+++...  ....++++.+++
T Consensus       119 ~~p~~~~~~~~~~~~l~~~~~~l  141 (207)
T 1wy7_A          119 NPPFGSQRKHADRPFLLKAFEIS  141 (207)
T ss_dssp             CCCCSSSSTTTTHHHHHHHHHHC
T ss_pred             cCCCccccCCchHHHHHHHHHhc
Confidence            887776642  345677777776

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.24  E-value=1.8e-12  Score=113.43  Aligned_cols=102  Identities=16%  Similarity=0.068  Sum_probs=67.2

Q ss_pred             ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEE-cCCCCCCCCCCCccEEE
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR-ADVCRLPFASGFVDAVH  242 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~-~d~~~lp~~~~~fD~V~  242 (319)
                      ..++.+|||||||+|.++..+++.+. .+|+|+|+|+.|++.++++..........++.+.. .|+..     ..||.+.
T Consensus        35 ~~~g~~VLDiGcGtG~~t~~la~~g~-~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~d~~~  108 (232)
T 3opn_A           35 EINGKTCLDIGSSTGGFTDVMLQNGA-KLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQ-----GRPSFTS  108 (232)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHTTC-SEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCS-----CCCSEEE
T ss_pred             CCCCCEEEEEccCCCHHHHHHHhcCC-CEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCc-----CCCCEEE
Confidence            34567999999999999999998853 49999999999999987753221000001222222 22221     1244444


Q ss_pred             ecccccCCCCHHHHHHHHHHhhcCCCeeEEEE
Q 020988          243 AGAALHCWPSPSNAASVFSSSYSLLSICYLLQ  274 (319)
Q Consensus       243 ~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~  274 (319)
                      +..++.++   ..+++++.|+|||+|.+.+++
T Consensus       109 ~D~v~~~l---~~~l~~i~rvLkpgG~lv~~~  137 (232)
T 3opn_A          109 IDVSFISL---DLILPPLYEILEKNGEVAALI  137 (232)
T ss_dssp             ECCSSSCG---GGTHHHHHHHSCTTCEEEEEE
T ss_pred             EEEEhhhH---HHHHHHHHHhccCCCEEEEEE
Confidence            44444443   678999999999999887754

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.24  E-value=1.2e-11  Score=110.73  Aligned_cols=113  Identities=12%  Similarity=0.103  Sum_probs=85.3

Q ss_pred             HHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCC-CeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC--
Q 020988          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF--  233 (319)
Q Consensus       157 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~--  233 (319)
                      .+...+...++.+|||+|||+|..+..+++..++ .+|+|+|+++.+++.++++++..+   ..++.++.+|+.+++.  
T Consensus        74 l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g---~~~v~~~~~D~~~~~~~~  150 (274)
T 3ajd_A           74 IPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMG---VLNTIIINADMRKYKDYL  150 (274)
T ss_dssp             HHHHHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTT---CCSEEEEESCHHHHHHHH
T ss_pred             HHHHHhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhC---CCcEEEEeCChHhcchhh
Confidence            3445566778899999999999999999986433 699999999999999999987753   3489999999987654  


Q ss_pred             --CCCCccEEEec------cccc------------CCCCHHHHHHHHHHhhcCCCeeEE
Q 020988          234 --ASGFVDAVHAG------AALH------------CWPSPSNAASVFSSSYSLLSICYL  272 (319)
Q Consensus       234 --~~~~fD~V~~~------~vl~------------h~~d~~~~l~el~rvlk~g~~~g~  272 (319)
                        ..++||+|++.      +++.            +.......++++.++|||||....
T Consensus       151 ~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~  209 (274)
T 3ajd_A          151 LKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVY  209 (274)
T ss_dssp             HHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEE
T ss_pred             hhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence              25789999986      2322            113456778888888877665443

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.24  E-value=4e-12  Score=114.01  Aligned_cols=105  Identities=17%  Similarity=0.155  Sum_probs=76.7

Q ss_pred             ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEE--EcCCCCCCCCCCCccEE
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV--RADVCRLPFASGFVDAV  241 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~--~~d~~~lp~~~~~fD~V  241 (319)
                      ..++.+|||||||+|.++..+++. .  +|+|+|+++ |+..++++.... .....++.++  ++|+.++|  +++||+|
T Consensus        80 ~~~g~~VLDlGcGtG~~s~~la~~-~--~V~gVD~s~-m~~~a~~~~~~~-~~~~~~v~~~~~~~D~~~l~--~~~fD~V  152 (276)
T 2wa2_A           80 VELKGTVVDLGCGRGSWSYYAASQ-P--NVREVKAYT-LGTSGHEKPRLV-ETFGWNLITFKSKVDVTKME--PFQADTV  152 (276)
T ss_dssp             CCCCEEEEEESCTTCHHHHHHHTS-T--TEEEEEEEC-CCCTTSCCCCCC-CCTTGGGEEEECSCCGGGCC--CCCCSEE
T ss_pred             CCCCCEEEEeccCCCHHHHHHHHc-C--CEEEEECch-hhhhhhhchhhh-hhcCCCeEEEeccCcHhhCC--CCCcCEE
Confidence            357889999999999999999987 3  899999998 543332211000 0001278999  99998876  6799999


Q ss_pred             EecccccCCCCHH-------HHHHHHHHhhcCCC--eeEEEEee
Q 020988          242 HAGAALHCWPSPS-------NAASVFSSSYSLLS--ICYLLQFR  276 (319)
Q Consensus       242 ~~~~vl~h~~d~~-------~~l~el~rvlk~g~--~~g~~~~~  276 (319)
                      ++..+ ++..++.       .+++++.++|||+|  .+.+-+|.
T Consensus       153 vsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~  195 (276)
T 2wa2_A          153 LCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN  195 (276)
T ss_dssp             EECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred             EECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence            99877 5554432       36888999999999  77766665

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.23  E-value=5.5e-12  Score=112.48  Aligned_cols=105  Identities=16%  Similarity=0.123  Sum_probs=76.2

Q ss_pred             ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEE--EcCCCCCCCCCCCccEE
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV--RADVCRLPFASGFVDAV  241 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~--~~d~~~lp~~~~~fD~V  241 (319)
                      ..++.+|||||||+|.++..+++.   .+|+|+|+++ ++..++++.... .....++.++  ++|+.+++  +++||+|
T Consensus        72 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~-m~~~a~~~~~~~-~~~~~~v~~~~~~~D~~~l~--~~~fD~V  144 (265)
T 2oxt_A           72 VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYT-LGVGGHEVPRIT-ESYGWNIVKFKSRVDIHTLP--VERTDVI  144 (265)
T ss_dssp             CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEEC-CCCSSCCCCCCC-CBTTGGGEEEECSCCTTTSC--CCCCSEE
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECch-hhhhhhhhhhhh-hccCCCeEEEecccCHhHCC--CCCCcEE
Confidence            457889999999999999999887   3899999998 533222110000 0001168899  99999887  6799999


Q ss_pred             EecccccCCCCHH-------HHHHHHHHhhcCCC--eeEEEEee
Q 020988          242 HAGAALHCWPSPS-------NAASVFSSSYSLLS--ICYLLQFR  276 (319)
Q Consensus       242 ~~~~vl~h~~d~~-------~~l~el~rvlk~g~--~~g~~~~~  276 (319)
                      ++..+ ++..++.       .+++++.++|||+|  .+.+-+|.
T Consensus       145 ~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~  187 (265)
T 2oxt_A          145 MCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC  187 (265)
T ss_dssp             EECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred             EEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence            99877 6555532       36888999999999  76666665

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.23  E-value=1e-11  Score=109.44  Aligned_cols=107  Identities=7%  Similarity=0.123  Sum_probs=77.9

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (319)
                      .+.+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+|+.+++.+++++..     ..+++++.+|+.+++++
T Consensus        19 ~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~-----~~~v~~~~~D~~~~~~~   91 (244)
T 1qam_A           19 IDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCN--FVTAIEIDHKLCKTTENKLVD-----HDNFQVLNKDILQFKFP   91 (244)
T ss_dssp             HHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEECSCHHHHHHHHHHTTT-----CCSEEEECCCGGGCCCC
T ss_pred             HHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcCC--eEEEEECCHHHHHHHHHhhcc-----CCCeEEEEChHHhCCcc
Confidence            34555556666788999999999999999999875  999999999999999998753     25899999999998876


Q ss_pred             C-CCccEEEec-----------ccccCCCCHHHHH----HHHHHhhcCCCe
Q 020988          235 S-GFVDAVHAG-----------AALHCWPSPSNAA----SVFSSSYSLLSI  269 (319)
Q Consensus       235 ~-~~fD~V~~~-----------~vl~h~~d~~~~l----~el~rvlk~g~~  269 (319)
                      + ..|+ |+++           ..++|...+...+    +.+.|+++++|.
T Consensus        92 ~~~~~~-vv~nlPy~~~~~~l~~~l~~~~~~~~~lm~q~e~a~rll~~~G~  141 (244)
T 1qam_A           92 KNQSYK-IFGNIPYNISTDIIRKIVFDSIADEIYLIVEYGFAKRLLNTKRS  141 (244)
T ss_dssp             SSCCCE-EEEECCGGGHHHHHHHHHHSCCCSEEEEEEEHHHHHHHTCTTSH
T ss_pred             cCCCeE-EEEeCCcccCHHHHHHHHhcCCCCeEEEEEEHHHHHHHhcCCcc
Confidence            4 4564 4443           2333433333333    336677776653

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.22  E-value=2.1e-11  Score=103.37  Aligned_cols=100  Identities=13%  Similarity=0.169  Sum_probs=74.6

Q ss_pred             ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC---------
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA---------  234 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~---------  234 (319)
                      ..++.+|||+|||+|.++..+++.+  .+|+|+|+++..              ...++.++++|+.+.+..         
T Consensus        23 ~~~g~~VLDlG~G~G~~s~~la~~~--~~V~gvD~~~~~--------------~~~~v~~~~~D~~~~~~~~~~~~~~~~   86 (191)
T 3dou_A           23 VRKGDAVIEIGSSPGGWTQVLNSLA--RKIISIDLQEME--------------EIAGVRFIRCDIFKETIFDDIDRALRE   86 (191)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTTC--SEEEEEESSCCC--------------CCTTCEEEECCTTSSSHHHHHHHHHHH
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHcC--CcEEEEeccccc--------------cCCCeEEEEccccCHHHHHHHHHHhhc
Confidence            3578999999999999999999884  499999999741              135899999999886521         


Q ss_pred             --CCCccEEEecccccCCC----C-------HHHHHHHHHHhhcCCCeeEEEEeeccc
Q 020988          235 --SGFVDAVHAGAALHCWP----S-------PSNAASVFSSSYSLLSICYLLQFRYTK  279 (319)
Q Consensus       235 --~~~fD~V~~~~vl~h~~----d-------~~~~l~el~rvlk~g~~~g~~~~~~~~  279 (319)
                        .++||+|++........    |       ...+++++.++|||||.+.+.+|....
T Consensus        87 ~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~  144 (191)
T 3dou_A           87 EGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDM  144 (191)
T ss_dssp             HTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTH
T ss_pred             ccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCC
Confidence              14899999965432221    1       235677888899998888877774443

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.21  E-value=6.7e-11  Score=106.85  Aligned_cols=87  Identities=13%  Similarity=0.231  Sum_probs=74.8

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (319)
Q Consensus       154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (319)
                      ..+.+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+++.+++.+++++..     ..+++++.+|+.++++
T Consensus        38 i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~~--~V~aVEid~~li~~a~~~~~~-----~~~v~vi~gD~l~~~~  110 (295)
T 3gru_A           38 FVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAK--KVYVIEIDKSLEPYANKLKEL-----YNNIEIIWGDALKVDL  110 (295)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEEESCGGGHHHHHHHHHH-----CSSEEEEESCTTTSCG
T ss_pred             HHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhcCC--EEEEEECCHHHHHHHHHHhcc-----CCCeEEEECchhhCCc
Confidence            345666677777889999999999999999999865  999999999999999998864     3689999999999988


Q ss_pred             CCCCccEEEecccc
Q 020988          234 ASGFVDAVHAGAAL  247 (319)
Q Consensus       234 ~~~~fD~V~~~~vl  247 (319)
                      ++.+||+|+++...
T Consensus       111 ~~~~fD~Iv~NlPy  124 (295)
T 3gru_A          111 NKLDFNKVVANLPY  124 (295)
T ss_dssp             GGSCCSEEEEECCG
T ss_pred             ccCCccEEEEeCcc
Confidence            87889999987443

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.20  E-value=4e-11  Score=104.23  Aligned_cols=104  Identities=12%  Similarity=0.063  Sum_probs=79.3

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (319)
                      .++.+|||||||+|.++..+++.++..+|+++|+++.+++.|+++++..+  ...++++..+|..+...+++.||+|++.
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~g--l~~~I~~~~gD~l~~~~~~~~~D~Ivia   97 (230)
T 3lec_A           20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHG--LTSKIDVRLANGLSAFEEADNIDTITIC   97 (230)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTT--CTTTEEEEECSGGGGCCGGGCCCEEEEE
T ss_pred             CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEECchhhccccccccCEEEEe
Confidence            35789999999999999999999877789999999999999999998764  3457999999998766544579999876


Q ss_pred             ccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          245 AALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       245 ~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      ++.-.+  ....+.+..+.+++++   .++.
T Consensus        98 GmGg~l--I~~IL~~~~~~l~~~~---~lIl  123 (230)
T 3lec_A           98 GMGGRL--IADILNNDIDKLQHVK---TLVL  123 (230)
T ss_dssp             EECHHH--HHHHHHHTGGGGTTCC---EEEE
T ss_pred             CCchHH--HHHHHHHHHHHhCcCC---EEEE
Confidence            554321  2344555555655544   4554

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.19  E-value=8.6e-11  Score=106.89  Aligned_cols=105  Identities=9%  Similarity=0.031  Sum_probs=81.8

Q ss_pred             CCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC--CCCCCCccEEEec
Q 020988          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAVHAG  244 (319)
Q Consensus       167 ~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD~V~~~  244 (319)
                      ..+|||||||+|.++..+++..+..+++++|+++.+++.|++++...   ..++++++.+|+.+.  .+.+++||+|++.
T Consensus        90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~---~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D  166 (317)
T 3gjy_A           90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIP---RAPRVKIRVDDARMVAESFTPASRDVIIRD  166 (317)
T ss_dssp             GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCC---CTTTEEEEESCHHHHHHTCCTTCEEEEEEC
T ss_pred             CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhcccc---CCCceEEEECcHHHHHhhccCCCCCEEEEC
Confidence            34999999999999999999767779999999999999999987532   246899999998764  3446799999985


Q ss_pred             cccc-----CCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          245 AALH-----CWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       245 ~vl~-----h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      ....     |+. ...++++++++|+++|.+.+...
T Consensus       167 ~~~~~~~~~~L~-t~efl~~~~r~LkpgGvlv~~~~  201 (317)
T 3gjy_A          167 VFAGAITPQNFT-TVEFFEHCHRGLAPGGLYVANCG  201 (317)
T ss_dssp             CSTTSCCCGGGS-BHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCccccchhhh-HHHHHHHHHHhcCCCcEEEEEec
Confidence            4322     221 25788999999988876654443

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.19  E-value=1.7e-11  Score=114.20  Aligned_cols=95  Identities=15%  Similarity=0.078  Sum_probs=74.1

Q ss_pred             CCCeEEEEcCC------cChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC----
Q 020988          166 QGGLLVDVSCG------SGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA----  234 (319)
Q Consensus       166 ~~~~VLDiGcG------~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~----  234 (319)
                      ++.+|||||||      +|..+..+++. .+..+|+|+|+|+.|.      .      ...+++++++|+.++|+.    
T Consensus       216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~------~------~~~rI~fv~GDa~dlpf~~~l~  283 (419)
T 3sso_A          216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH------V------DELRIRTIQGDQNDAEFLDRIA  283 (419)
T ss_dssp             SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG------G------CBTTEEEEECCTTCHHHHHHHH
T ss_pred             CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh------h------cCCCcEEEEecccccchhhhhh
Confidence            56899999999      66666666554 5677999999999973      1      136899999999998876    


Q ss_pred             --CCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988          235 --SGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       235 --~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~  273 (319)
                        +++||+|++.. .+++.+....++++.++|||||.+.+.
T Consensus       284 ~~d~sFDlVisdg-sH~~~d~~~aL~el~rvLKPGGvlVi~  323 (419)
T 3sso_A          284 RRYGPFDIVIDDG-SHINAHVRTSFAALFPHVRPGGLYVIE  323 (419)
T ss_dssp             HHHCCEEEEEECS-CCCHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             cccCCccEEEECC-cccchhHHHHHHHHHHhcCCCeEEEEE
Confidence              68999999864 466667788888888888877654443

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.19  E-value=5.6e-11  Score=104.09  Aligned_cols=113  Identities=13%  Similarity=0.127  Sum_probs=84.7

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-C
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P  232 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p  232 (319)
                      ...+..++...++.+|||||||+|..+..+++..+ ..+++++|+++.+++.|+++++..+  ...+++++.+|+.+. +
T Consensus        59 ~~~l~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g--~~~~i~~~~gda~~~l~  136 (237)
T 3c3y_A           59 GQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAG--VEHKINFIESDAMLALD  136 (237)
T ss_dssp             HHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTT--CGGGEEEEESCHHHHHH
T ss_pred             HHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEcCHHHHHH
Confidence            34444445556778999999999999999998854 5799999999999999999987653  234799999998653 2


Q ss_pred             -C-----CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          233 -F-----ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       233 -~-----~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                       +     .+++||+|++...-   .+....++++.++|+|||   .+++
T Consensus       137 ~l~~~~~~~~~fD~I~~d~~~---~~~~~~l~~~~~~L~pGG---~lv~  179 (237)
T 3c3y_A          137 NLLQGQESEGSYDFGFVDADK---PNYIKYHERLMKLVKVGG---IVAY  179 (237)
T ss_dssp             HHHHSTTCTTCEEEEEECSCG---GGHHHHHHHHHHHEEEEE---EEEE
T ss_pred             HHHhccCCCCCcCEEEECCch---HHHHHHHHHHHHhcCCCe---EEEE
Confidence             2     15789999986432   245667788888877665   4544

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.18  E-value=1.1e-10  Score=111.14  Aligned_cols=98  Identities=16%  Similarity=0.215  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC
Q 020988          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (319)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (319)
                      +.....+...+...++.+|||+|||+|..+..+++.+++.+|+++|+++.+++.++++++..+    .++.++.+|+..+
T Consensus       232 d~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g----~~~~~~~~D~~~~  307 (429)
T 1sqg_A          232 DASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLG----MKATVKQGDGRYP  307 (429)
T ss_dssp             CHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTT----CCCEEEECCTTCT
T ss_pred             CHHHHHHHHHcCCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcC----CCeEEEeCchhhc
Confidence            334455666777788999999999999999999998766799999999999999999987753    3578999999887


Q ss_pred             C--CCCCCccEEEe------cccccCCCCH
Q 020988          232 P--FASGFVDAVHA------GAALHCWPSP  253 (319)
Q Consensus       232 p--~~~~~fD~V~~------~~vl~h~~d~  253 (319)
                      +  +.+++||+|++      .+++.+.++.
T Consensus       308 ~~~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~  337 (429)
T 1sqg_A          308 SQWCGEQQFDRILLDAPCSATGVIRRHPDI  337 (429)
T ss_dssp             HHHHTTCCEEEEEEECCCCCGGGTTTCTTH
T ss_pred             hhhcccCCCCEEEEeCCCCcccccCCCcch
Confidence            6  55678999996      3466666653

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.18  E-value=5.1e-11  Score=104.37  Aligned_cols=104  Identities=9%  Similarity=0.039  Sum_probs=77.9

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (319)
                      .++.+|||||||+|.++..+++.++..+|+++|+++.+++.|+++++..+  ...++.+..+|..+...++.+||+|++.
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~g--l~~~I~v~~gD~l~~~~~~~~~D~Ivia   97 (244)
T 3gnl_A           20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSG--LTEQIDVRKGNGLAVIEKKDAIDTIVIA   97 (244)
T ss_dssp             CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT--CTTTEEEEECSGGGGCCGGGCCCEEEEE
T ss_pred             CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CCceEEEEecchhhccCccccccEEEEe
Confidence            35789999999999999999999876789999999999999999998764  2356999999988765444469999876


Q ss_pred             ccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          245 AALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       245 ~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      ++.-.+  ....+.+..+.++++   +.++.
T Consensus        98 gmGg~l--I~~IL~~~~~~L~~~---~~lIl  123 (244)
T 3gnl_A           98 GMGGTL--IRTILEEGAAKLAGV---TKLIL  123 (244)
T ss_dssp             EECHHH--HHHHHHHTGGGGTTC---CEEEE
T ss_pred             CCchHH--HHHHHHHHHHHhCCC---CEEEE
Confidence            543311  234455555566543   44444

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.18  E-value=5.9e-11  Score=109.20  Aligned_cols=108  Identities=12%  Similarity=0.087  Sum_probs=79.9

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCc-cCCCCeEEEEcCCCCC--CCCCCCccEE
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT-ILTSNLALVRADVCRL--PFASGFVDAV  241 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~-~~~~~i~~~~~d~~~l--p~~~~~fD~V  241 (319)
                      .++.+|||||||+|.++..+++..+..+|+++|+|+.+++.|++++...+. ....+++++.+|+.+.  ...+++||+|
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI  198 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV  198 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence            456899999999999999999876567999999999999999998764200 0136899999998653  2345789999


Q ss_pred             Eeccc--ccCCCC--HHHHHHHHHHhhcCCCeeEE
Q 020988          242 HAGAA--LHCWPS--PSNAASVFSSSYSLLSICYL  272 (319)
Q Consensus       242 ~~~~v--l~h~~d--~~~~l~el~rvlk~g~~~g~  272 (319)
                      ++...  +++..+  ...+++++.++|+|+|.+.+
T Consensus       199 i~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~  233 (334)
T 1xj5_A          199 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCT  233 (334)
T ss_dssp             EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEE
T ss_pred             EECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEE
Confidence            98543  111111  35778888888887664443

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.17  E-value=6.2e-11  Score=99.95  Aligned_cols=99  Identities=13%  Similarity=0.056  Sum_probs=73.7

Q ss_pred             ccCCCeEEEEcCCcChHHHHHHhhCCC---------CeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEE-EcCCCCCC-
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFAKSGTY---------SGVVALDFSENMLRQCYDFIKQDNTILTSNLALV-RADVCRLP-  232 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~---------~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~-~~d~~~lp-  232 (319)
                      ..++.+|||||||+|.++..+++..+.         .+|+|+|+|+..              ...+++++ .+|+...+ 
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~--------------~~~~~~~~~~~d~~~~~~   85 (196)
T 2nyu_A           20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF--------------PLEGATFLCPADVTDPRT   85 (196)
T ss_dssp             CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC--------------CCTTCEEECSCCTTSHHH
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc--------------cCCCCeEEEeccCCCHHH
Confidence            356889999999999999999988432         689999999831              12478889 89987653 


Q ss_pred             -------CCCCCccEEEecccccCC----CCH-------HHHHHHHHHhhcCCCeeEEEEee
Q 020988          233 -------FASGFVDAVHAGAALHCW----PSP-------SNAASVFSSSYSLLSICYLLQFR  276 (319)
Q Consensus       233 -------~~~~~fD~V~~~~vl~h~----~d~-------~~~l~el~rvlk~g~~~g~~~~~  276 (319)
                             +++++||+|++..+++..    .+.       ..+++++.++|||+|.+.+..+.
T Consensus        86 ~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~  147 (196)
T 2nyu_A           86 SQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWA  147 (196)
T ss_dssp             HHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             HHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence                   335689999997655432    233       36788888998888776665553

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.17  E-value=7.4e-11  Score=107.74  Aligned_cols=109  Identities=13%  Similarity=0.040  Sum_probs=82.8

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCc--cCCCCeEEEEcCCCC-CCCCCCCccEE
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT--ILTSNLALVRADVCR-LPFASGFVDAV  241 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~--~~~~~i~~~~~d~~~-lp~~~~~fD~V  241 (319)
                      .++.+|||||||+|.++..+++..+..+|+++|+++.+++.|++++...+.  ...++++++.+|+.+ ++..+++||+|
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I  155 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence            456899999999999999999875566999999999999999998754110  114689999999876 34446789999


Q ss_pred             EecccccC-CCC------HHHHHHHHHHhhcCCCeeEEE
Q 020988          242 HAGAALHC-WPS------PSNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       242 ~~~~vl~h-~~d------~~~~l~el~rvlk~g~~~g~~  273 (319)
                      ++....++ ...      ...+++++.++|+|+|.+.+.
T Consensus       156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  194 (314)
T 1uir_A          156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ  194 (314)
T ss_dssp             EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred             EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEE
Confidence            99765443 111      257788888888887765544

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.17  E-value=1.2e-10  Score=105.55  Aligned_cols=88  Identities=16%  Similarity=0.267  Sum_probs=68.6

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (319)
Q Consensus       154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (319)
                      ..+.+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+|+.+++.+++++...+   ..+++++.+|+..+++
T Consensus        30 i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~~~--~v~~vDi~~~~~~~a~~~~~~~~---~~~v~~~~~D~~~~~~  104 (299)
T 2h1r_A           30 ILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAK--KVITIDIDSRMISEVKKRCLYEG---YNNLEVYEGDAIKTVF  104 (299)
T ss_dssp             HHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTTSS--EEEEECSCHHHHHHHHHHHHHTT---CCCEEC----CCSSCC
T ss_pred             HHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcC---CCceEEEECchhhCCc
Confidence            345566667667889999999999999999998865  99999999999999999886532   3689999999998876


Q ss_pred             CCCCccEEEeccccc
Q 020988          234 ASGFVDAVHAGAALH  248 (319)
Q Consensus       234 ~~~~fD~V~~~~vl~  248 (319)
                      .  +||+|+++...+
T Consensus       105 ~--~~D~Vv~n~py~  117 (299)
T 2h1r_A          105 P--KFDVCTANIPYK  117 (299)
T ss_dssp             C--CCSEEEEECCGG
T ss_pred             c--cCCEEEEcCCcc
Confidence            3  899999865443

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.15  E-value=6.4e-11  Score=106.56  Aligned_cols=108  Identities=11%  Similarity=0.108  Sum_probs=80.4

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCcc-CCCCeEEEEcCCCCC-CCCCCCccEEE
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI-LTSNLALVRADVCRL-PFASGFVDAVH  242 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~i~~~~~d~~~l-p~~~~~fD~V~  242 (319)
                      .++.+|||||||+|.++..+++..+..+++++|+++.+++.|++++...+.. ..++++++.+|+.+. +..+++||+|+
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  156 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  156 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence            4568999999999999999998766679999999999999999987542110 146899999998663 32357899999


Q ss_pred             ecccccCCCCH----HHHHHHHHHhhcCCCeeEE
Q 020988          243 AGAALHCWPSP----SNAASVFSSSYSLLSICYL  272 (319)
Q Consensus       243 ~~~vl~h~~d~----~~~l~el~rvlk~g~~~g~  272 (319)
                      +.....+.+..    ..+++++.++|+|+|...+
T Consensus       157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~  190 (283)
T 2i7c_A          157 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVA  190 (283)
T ss_dssp             EECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEE
T ss_pred             EcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEE
Confidence            85433222111    5778888888887665443

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.15  E-value=5.7e-11  Score=108.43  Aligned_cols=106  Identities=12%  Similarity=0.073  Sum_probs=76.2

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCcc-CCCCeEEEEcCCCC-CCCCCCCccEEE
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI-LTSNLALVRADVCR-LPFASGFVDAVH  242 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~i~~~~~d~~~-lp~~~~~fD~V~  242 (319)
                      ..+.+|||||||+|.++..+++..+..+|+++|+|+.+++.|++++...+.. ..++++++.+|+.+ ++..+++||+|+
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  186 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII  186 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence            4568999999999999999998765679999999999999999987542101 14689999999866 333467899999


Q ss_pred             ecccccCCCCH-----HHHHHHHHHhhcCCCeeE
Q 020988          243 AGAALHCWPSP-----SNAASVFSSSYSLLSICY  271 (319)
Q Consensus       243 ~~~vl~h~~d~-----~~~l~el~rvlk~g~~~g  271 (319)
                      +... +++...     ..+++++.++|+|+|...
T Consensus       187 ~d~~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv  219 (314)
T 2b2c_A          187 TDSS-DPVGPAESLFGQSYYELLRDALKEDGILS  219 (314)
T ss_dssp             ECCC--------------HHHHHHHHEEEEEEEE
T ss_pred             EcCC-CCCCcchhhhHHHHHHHHHhhcCCCeEEE
Confidence            8543 332211     466777888877765443

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.15  E-value=6e-11  Score=107.82  Aligned_cols=109  Identities=13%  Similarity=0.118  Sum_probs=79.4

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcC-ccCCCCeEEEEcCCCC-CCCCCCCccEEE
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-TILTSNLALVRADVCR-LPFASGFVDAVH  242 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~-~~~~~~i~~~~~d~~~-lp~~~~~fD~V~  242 (319)
                      .++.+|||||||+|.++..+++..+..+|+++|+|+.+++.|++++.... ....++++++.+|+.+ ++..+++||+|+
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii  173 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence            45689999999999999999988666799999999999999999875410 0014689999999865 344467899999


Q ss_pred             ecccccCCC----CHHHHHHHHHHhhcCCCeeEEE
Q 020988          243 AGAALHCWP----SPSNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       243 ~~~vl~h~~----d~~~~l~el~rvlk~g~~~g~~  273 (319)
                      +....+..+    ....+++++.++|+|+|.+.+-
T Consensus       174 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  208 (304)
T 2o07_A          174 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQ  208 (304)
T ss_dssp             EECC-----------CHHHHHHHHHEEEEEEEEEE
T ss_pred             ECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEe
Confidence            854332211    1235688888888877655443

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.14  E-value=9.3e-11  Score=106.18  Aligned_cols=107  Identities=8%  Similarity=0.023  Sum_probs=78.2

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcC-ccCCCCeEEEEcCCCC-CCCCCCCccEEE
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-TILTSNLALVRADVCR-LPFASGFVDAVH  242 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~-~~~~~~i~~~~~d~~~-lp~~~~~fD~V~  242 (319)
                      ..+.+|||||||+|.++..+++..+..+|+++|+|+.+++.|++++...+ ....++++++.+|+.+ ++..+++||+|+
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  168 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII  168 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence            35689999999999999999987555799999999999999999875310 0114689999999865 344457899999


Q ss_pred             ecccccC-CC-----CHHHHHHHHHHhhcCCCeeEE
Q 020988          243 AGAALHC-WP-----SPSNAASVFSSSYSLLSICYL  272 (319)
Q Consensus       243 ~~~vl~h-~~-----d~~~~l~el~rvlk~g~~~g~  272 (319)
                      +... .+ +.     ....+++++.++|+|+|.+.+
T Consensus       169 ~d~~-~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~  203 (296)
T 1inl_A          169 IDST-DPTAGQGGHLFTEEFYQACYDALKEDGVFSA  203 (296)
T ss_dssp             EEC-----------CCSHHHHHHHHHHEEEEEEEEE
T ss_pred             EcCC-CcccCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence            8432 22 21     125678888888887665444

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.14  E-value=9.8e-11  Score=104.92  Aligned_cols=108  Identities=10%  Similarity=0.076  Sum_probs=80.5

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcC-ccCCCCeEEEEcCCCC-CCCCCCCccEEE
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-TILTSNLALVRADVCR-LPFASGFVDAVH  242 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~-~~~~~~i~~~~~d~~~-lp~~~~~fD~V~  242 (319)
                      ..+.+|||||||+|.++..+++..+..+|+++|+++.+++.|++++...+ ....++++++.+|+.+ ++..+++||+|+
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii  153 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM  153 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred             CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence            35789999999999999999987445699999999999999999875311 0124689999999866 343457899999


Q ss_pred             ecccccCCCC----HHHHHHHHHHhhcCCCeeEE
Q 020988          243 AGAALHCWPS----PSNAASVFSSSYSLLSICYL  272 (319)
Q Consensus       243 ~~~vl~h~~d----~~~~l~el~rvlk~g~~~g~  272 (319)
                      +.....+.+.    ...+++++.++|+|+|.+..
T Consensus       154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~  187 (275)
T 1iy9_A          154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVA  187 (275)
T ss_dssp             ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEE
T ss_pred             ECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEE
Confidence            9543322111    25778889999887765543

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.13  E-value=2.4e-10  Score=105.55  Aligned_cols=124  Identities=10%  Similarity=0.038  Sum_probs=93.2

Q ss_pred             CCCCcHHHHHHHHHHh----hccCCCeEEEEcCCcChHHHHHHhhCCC-----CeEEEEeCCHHHHHHHHHHHhhcCccC
Q 020988          147 GFPGPDEEFKMAQEYF----KSAQGGLLVDVSCGSGLFSRKFAKSGTY-----SGVVALDFSENMLRQCYDFIKQDNTIL  217 (319)
Q Consensus       147 ~~~~~~~~~~~l~~~l----~~~~~~~VLDiGcG~G~~~~~l~~~g~~-----~~v~gvD~s~~~l~~a~~~~~~~~~~~  217 (319)
                      .++.|....+.+...+    ...++.+|||+|||+|.++..+++..+.     .+++|+|+++.+++.|+.++...+   
T Consensus       107 ~~~TP~~i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g---  183 (344)
T 2f8l_A          107 HQMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR---  183 (344)
T ss_dssp             GCCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT---
T ss_pred             cCCChHHHHHHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCC---
Confidence            3667777665554444    3346789999999999999988877532     589999999999999999886542   


Q ss_pred             CCCeEEEEcCCCCCCCCCCCccEEEecccccCCCCHH------------------HHHHHHHHhhcCCCeeEEEEe
Q 020988          218 TSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPS------------------NAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       218 ~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~------------------~~l~el~rvlk~g~~~g~~~~  275 (319)
                       .++.++.+|..... ..++||+|+++-.+.++++.+                  ..++++.+.|+++|..++++.
T Consensus       184 -~~~~i~~~D~l~~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p  257 (344)
T 2f8l_A          184 -QKMTLLHQDGLANL-LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP  257 (344)
T ss_dssp             -CCCEEEESCTTSCC-CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             -CCceEEECCCCCcc-ccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEEC
Confidence             26889999986633 457899999998776654432                  467788888888777666663

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.13  E-value=1.5e-10  Score=100.28  Aligned_cols=103  Identities=12%  Similarity=0.110  Sum_probs=77.2

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC-CCCCCCCccEEEe
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFASGFVDAVHA  243 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~~~~~fD~V~~  243 (319)
                      .++.+|||||||+|.++..+++.++..+|+++|+++.+++.|+++++.++  ...++++..+|..+ ++. ..+||+|++
T Consensus        14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~g--l~~~i~~~~~d~l~~l~~-~~~~D~Ivi   90 (225)
T 3kr9_A           14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHG--LKEKIQVRLANGLAAFEE-TDQVSVITI   90 (225)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT--CTTTEEEEECSGGGGCCG-GGCCCEEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CCceEEEEECchhhhccc-CcCCCEEEE
Confidence            35789999999999999999999877789999999999999999998864  23479999999853 432 236999987


Q ss_pred             cccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          244 GAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       244 ~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      .++--.+  ....+.+....++++   +.++.
T Consensus        91 aG~Gg~~--i~~Il~~~~~~L~~~---~~lVl  117 (225)
T 3kr9_A           91 AGMGGRL--IARILEEGLGKLANV---ERLIL  117 (225)
T ss_dssp             EEECHHH--HHHHHHHTGGGCTTC---CEEEE
T ss_pred             cCCChHH--HHHHHHHHHHHhCCC---CEEEE
Confidence            6542211  234556666666654   44555

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.13  E-value=1e-10  Score=107.18  Aligned_cols=108  Identities=10%  Similarity=0.104  Sum_probs=80.2

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCc-cCCCCeEEEEcCCCCC-CCCCCCccEEE
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT-ILTSNLALVRADVCRL-PFASGFVDAVH  242 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~-~~~~~i~~~~~d~~~l-p~~~~~fD~V~  242 (319)
                      .++.+|||||||+|.++..+++..+..+|+++|+|+.+++.|++++..... ...++++++.+|+.+. +..+++||+|+
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi  194 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  194 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence            456899999999999999999875567999999999999999998764100 0136899999998652 33357899999


Q ss_pred             ecccccCCC---C--HHHHHHHHHHhhcCCCeeEEE
Q 020988          243 AGAALHCWP---S--PSNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       243 ~~~vl~h~~---d--~~~~l~el~rvlk~g~~~g~~  273 (319)
                      +... +++.   +  ...+++++.++|+|+|.....
T Consensus       195 ~d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  229 (321)
T 2pt6_A          195 VDSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQ  229 (321)
T ss_dssp             EECC-CSSSGGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred             ECCc-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence            8542 2221   1  157788888888877655543

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.12  E-value=3.4e-10  Score=108.97  Aligned_cols=113  Identities=13%  Similarity=0.075  Sum_probs=84.9

Q ss_pred             HHHHHHhhcc--CCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC
Q 020988          156 KMAQEYFKSA--QGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (319)
Q Consensus       156 ~~l~~~l~~~--~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (319)
                      ..+...+...  ++.+|||+|||+|..+..+++... ...|+++|+|+.+++.++++++..+   ..++.++.+|+..++
T Consensus       105 ~l~~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g---~~nv~~~~~D~~~~~  181 (479)
T 2frx_A          105 MLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCG---ISNVALTHFDGRVFG  181 (479)
T ss_dssp             HHHHHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHT---CCSEEEECCCSTTHH
T ss_pred             HHHHHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC---CCcEEEEeCCHHHhh
Confidence            3444556666  889999999999999999998742 4689999999999999999988753   457999999998876


Q ss_pred             C-CCCCccEEEec------ccccCCCCH----------------HHHHHHHHHhhcCCCeeE
Q 020988          233 F-ASGFVDAVHAG------AALHCWPSP----------------SNAASVFSSSYSLLSICY  271 (319)
Q Consensus       233 ~-~~~~fD~V~~~------~vl~h~~d~----------------~~~l~el~rvlk~g~~~g  271 (319)
                      . .+++||+|++.      +++.+.++.                ...++++.++|||||.+.
T Consensus       182 ~~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~Lv  243 (479)
T 2frx_A          182 AAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLV  243 (479)
T ss_dssp             HHSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             hhccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence            3 45789999972      345444431                245667777777665443

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.11  E-value=2.6e-10  Score=108.65  Aligned_cols=86  Identities=17%  Similarity=0.284  Sum_probs=70.8

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC----
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR----  230 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~----  230 (319)
                      .+.+.+.+...++.+|||+|||+|.++..+++.+.  +|+|+|+|+.+++.|+++++.++   ..++.++.+|+.+    
T Consensus       275 ~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~~~--~V~gvD~s~~al~~A~~n~~~~~---~~~v~f~~~d~~~~l~~  349 (433)
T 1uwv_A          275 VARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAA--SVVGVEGVPALVEKGQQNARLNG---LQNVTFYHENLEEDVTK  349 (433)
T ss_dssp             HHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSS--EEEEEESCHHHHHHHHHHHHHTT---CCSEEEEECCTTSCCSS
T ss_pred             HHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhhCC--EEEEEeCCHHHHHHHHHHHHHcC---CCceEEEECCHHHHhhh
Confidence            44555556666788999999999999999998854  99999999999999999987653   3489999999987    


Q ss_pred             CCCCCCCccEEEecc
Q 020988          231 LPFASGFVDAVHAGA  245 (319)
Q Consensus       231 lp~~~~~fD~V~~~~  245 (319)
                      +++.+++||+|++.-
T Consensus       350 ~~~~~~~fD~Vv~dP  364 (433)
T 1uwv_A          350 QPWAKNGFDKVLLDP  364 (433)
T ss_dssp             SGGGTTCCSEEEECC
T ss_pred             hhhhcCCCCEEEECC
Confidence            345667899999853

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.10  E-value=1.4e-10  Score=100.85  Aligned_cols=81  Identities=15%  Similarity=0.105  Sum_probs=69.1

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (319)
                      .++.+|||||||+|.++..+.   +..+|+|+|+|+.+++.+++++...    ..+..+..+|....+.+ ++||+|++.
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~----g~~~~~~v~D~~~~~~~-~~~DvvLll  175 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREK----DWDFTFALQDVLCAPPA-EAGDLALIF  175 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHT----TCEEEEEECCTTTSCCC-CBCSEEEEE
T ss_pred             CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhc----CCCceEEEeecccCCCC-CCcchHHHH
Confidence            567899999999999998877   4569999999999999999998664    46788999999888765 599999999


Q ss_pred             ccccCCCCH
Q 020988          245 AALHCWPSP  253 (319)
Q Consensus       245 ~vl~h~~d~  253 (319)
                      -++||+.+.
T Consensus       176 k~lh~LE~q  184 (253)
T 3frh_A          176 KLLPLLERE  184 (253)
T ss_dssp             SCHHHHHHH
T ss_pred             HHHHHhhhh
Confidence            888887543

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=99.10  E-value=1.9e-12  Score=114.01  Aligned_cols=109  Identities=10%  Similarity=0.208  Sum_probs=82.2

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (319)
                      +.+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+|+.+++.++++...     ..+++++.+|+.++++++
T Consensus        19 ~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~~--~v~~id~~~~~~~~a~~~~~~-----~~~v~~~~~D~~~~~~~~   91 (245)
T 1yub_A           19 NQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISK--QVTSIELDSHLFNLSSEKLKL-----NTRVTLIHQDILQFQFPN   91 (245)
T ss_dssp             HHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSS--EEEESSSSCSSSSSSSCTTTT-----CSEEEECCSCCTTTTCCC
T ss_pred             HHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHhcc-----CCceEEEECChhhcCccc
Confidence            4555666667788999999999999999999874  999999999999998876542     357999999999988763


Q ss_pred             -CCccEEEecc-----------cccCCCCHHHHH----HHHHHhhcCCCeeEE
Q 020988          236 -GFVDAVHAGA-----------ALHCWPSPSNAA----SVFSSSYSLLSICYL  272 (319)
Q Consensus       236 -~~fD~V~~~~-----------vl~h~~d~~~~l----~el~rvlk~g~~~g~  272 (319)
                       ++| .|+++-           .++|..+....+    +.+.|+++++|.+.+
T Consensus        92 ~~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v  143 (245)
T 1yub_A           92 KQRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGL  143 (245)
T ss_dssp             SSEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHH
T ss_pred             CCCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhh
Confidence             678 565542           233333444445    668889988875443

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.09  E-value=4.3e-10  Score=99.57  Aligned_cols=83  Identities=12%  Similarity=0.214  Sum_probs=69.0

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (319)
Q Consensus       154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (319)
                      ..+.+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+|+.+++.+++++..     ..+++++.+|+.++++
T Consensus        17 i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~--~V~avEid~~~~~~~~~~~~~-----~~~v~~i~~D~~~~~~   89 (255)
T 3tqs_A           17 VLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECD--NLALVEIDRDLVAFLQKKYNQ-----QKNITIYQNDALQFDF   89 (255)
T ss_dssp             HHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTSS--EEEEEECCHHHHHHHHHHHTT-----CTTEEEEESCTTTCCG
T ss_pred             HHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHhh-----CCCcEEEEcchHhCCH
Confidence            345666777777889999999999999999999875  999999999999999998754     3589999999999876


Q ss_pred             CC----CCccEEEec
Q 020988          234 AS----GFVDAVHAG  244 (319)
Q Consensus       234 ~~----~~fD~V~~~  244 (319)
                      ++    ++|| |+++
T Consensus        90 ~~~~~~~~~~-vv~N  103 (255)
T 3tqs_A           90 SSVKTDKPLR-VVGN  103 (255)
T ss_dssp             GGSCCSSCEE-EEEE
T ss_pred             HHhccCCCeE-EEec
Confidence            43    5688 5543

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.08  E-value=2.1e-10  Score=103.01  Aligned_cols=105  Identities=11%  Similarity=0.055  Sum_probs=78.4

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCcc--------CCCCeEEEEcCCCCC-CCCC
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI--------LTSNLALVRADVCRL-PFAS  235 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~--------~~~~i~~~~~d~~~l-p~~~  235 (319)
                      .++.+|||||||+|.++..+++. +..+|+++|+++.+++.|++++ ..+..        ..++++++.+|+.+. +. +
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~  150 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-N  150 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-C
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-c
Confidence            45789999999999999999988 5679999999999999999987 32100        146899999997652 32 5


Q ss_pred             CCccEEEecccccCCCC-----HHHHHHHHHHhhcCCCeeEEE
Q 020988          236 GFVDAVHAGAALHCWPS-----PSNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       236 ~~fD~V~~~~vl~h~~d-----~~~~l~el~rvlk~g~~~g~~  273 (319)
                      ++||+|++.... ++..     ...+++++.++|+|+|...+.
T Consensus       151 ~~fD~Ii~d~~~-~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~  192 (281)
T 1mjf_A          151 RGFDVIIADSTD-PVGPAKVLFSEEFYRYVYDALNNPGIYVTQ  192 (281)
T ss_dssp             CCEEEEEEECCC-CC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCeeEEEECCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence            789999986543 2211     256788888888877655443

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.07  E-value=3.5e-10  Score=106.45  Aligned_cols=105  Identities=16%  Similarity=0.111  Sum_probs=78.7

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC----CCCCccE
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF----ASGFVDA  240 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~----~~~~fD~  240 (319)
                      .++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.|+++++.++.. ..+++++.+|+.+...    ..++||+
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~-~~~v~~~~~D~~~~~~~~~~~~~~fD~  296 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLD-LSKAEFVRDDVFKLLRTYRDRGEKFDV  296 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCC-GGGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             hCCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-ccceEEEECCHHHHHHHHHhcCCCCCE
Confidence            467899999999999999999876 358999999999999999998775310 1279999999876521    1468999


Q ss_pred             EEecc---------cccCCCCHHHHHHHHHHhhcCCCeeE
Q 020988          241 VHAGA---------ALHCWPSPSNAASVFSSSYSLLSICY  271 (319)
Q Consensus       241 V~~~~---------vl~h~~d~~~~l~el~rvlk~g~~~g  271 (319)
                      |++.-         +.++..+....+.++.++++|+|...
T Consensus       297 Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~  336 (396)
T 3c0k_A          297 IVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILL  336 (396)
T ss_dssp             EEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEE
T ss_pred             EEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEE
Confidence            99963         22333455566777777777655433

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.06  E-value=1.5e-10  Score=110.71  Aligned_cols=84  Identities=13%  Similarity=0.128  Sum_probs=69.2

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-C
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-F  233 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~  233 (319)
                      ..+...+...++.+|||+|||+|..+..+++..+ ...|+++|+|+.+++.++++++..+   .. +.++.+|+.+++ .
T Consensus        91 ~l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G---~~-v~~~~~Da~~l~~~  166 (464)
T 3m6w_A           91 QAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWG---AP-LAVTQAPPRALAEA  166 (464)
T ss_dssp             HHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHC---CC-CEEECSCHHHHHHH
T ss_pred             HHHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC---Ce-EEEEECCHHHhhhh
Confidence            4455566777899999999999999999998743 3689999999999999999998763   33 889999988765 2


Q ss_pred             CCCCccEEEe
Q 020988          234 ASGFVDAVHA  243 (319)
Q Consensus       234 ~~~~fD~V~~  243 (319)
                      .+++||+|++
T Consensus       167 ~~~~FD~Il~  176 (464)
T 3m6w_A          167 FGTYFHRVLL  176 (464)
T ss_dssp             HCSCEEEEEE
T ss_pred             ccccCCEEEE
Confidence            4579999995

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.06  E-value=2.3e-10  Score=101.77  Aligned_cols=98  Identities=7%  Similarity=-0.086  Sum_probs=77.4

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcC-ccCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-TILTSNLALVRADVCRLPFASGFVDAVHA  243 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~-~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (319)
                      ..+.+|||||||+|.++..+++. + .+|+++|+++.+++.|++++.... ....++++++.+|..+..   ++||+|++
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~  145 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFC  145 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEE
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEE
Confidence            35689999999999999999988 5 799999999999999998764310 012468999999988764   78999998


Q ss_pred             cccccCCCCHHHHHHHHHHhhcCCCeeEE
Q 020988          244 GAALHCWPSPSNAASVFSSSYSLLSICYL  272 (319)
Q Consensus       244 ~~vl~h~~d~~~~l~el~rvlk~g~~~g~  272 (319)
                      .     ..+|..+++++.++|+|+|.+..
T Consensus       146 d-----~~dp~~~~~~~~~~L~pgG~lv~  169 (262)
T 2cmg_A          146 L-----QEPDIHRIDGLKRMLKEDGVFIS  169 (262)
T ss_dssp             S-----SCCCHHHHHHHHTTEEEEEEEEE
T ss_pred             C-----CCChHHHHHHHHHhcCCCcEEEE
Confidence            6     45777788888888877765544

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.05  E-value=1.4e-09  Score=97.27  Aligned_cols=98  Identities=17%  Similarity=0.150  Sum_probs=80.1

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (319)
                      .++.+|||+|||+|.++..+++.+. .+|+++|+++.+++.++++++.++  ...++.++.+|+.+++. .+.||.|++.
T Consensus       124 ~~g~~VlD~~aG~G~~~i~~a~~g~-~~V~avD~np~a~~~~~~N~~~N~--v~~~v~~~~~D~~~~~~-~~~~D~Vi~~  199 (278)
T 3k6r_A          124 KPDELVVDMFAGIGHLSLPIAVYGK-AKVIAIEKDPYTFKFLVENIHLNK--VEDRMSAYNMDNRDFPG-ENIADRILMG  199 (278)
T ss_dssp             CTTCEEEETTCTTTTTTHHHHHHTC-CEEEEECCCHHHHHHHHHHHHHTT--CTTTEEEECSCTTTCCC-CSCEEEEEEC
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcC-CeEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEeCcHHHhcc-ccCCCEEEEC
Confidence            5689999999999999999998863 589999999999999999998764  34679999999988764 5789999876


Q ss_pred             ccccCCCCHHHHHHHHHHhhcCCCee
Q 020988          245 AALHCWPSPSNAASVFSSSYSLLSIC  270 (319)
Q Consensus       245 ~vl~h~~d~~~~l~el~rvlk~g~~~  270 (319)
                      .    .+.....+..+.+++|+||..
T Consensus       200 ~----p~~~~~~l~~a~~~lk~gG~i  221 (278)
T 3k6r_A          200 Y----VVRTHEFIPKALSIAKDGAII  221 (278)
T ss_dssp             C----CSSGGGGHHHHHHHEEEEEEE
T ss_pred             C----CCcHHHHHHHHHHHcCCCCEE
Confidence            3    234456677788888876654

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.05  E-value=1.3e-10  Score=102.05  Aligned_cols=100  Identities=12%  Similarity=0.084  Sum_probs=79.2

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (319)
                      .++.+|||||||+|-++..+....+..+|+++|+++.+++.+++++...    ..+.++.+.|...-+. .++||+|++.
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~----g~~~~~~v~D~~~~~p-~~~~DvaL~l  205 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRL----NVPHRTNVADLLEDRL-DEPADVTLLL  205 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHT----TCCEEEEECCTTTSCC-CSCCSEEEET
T ss_pred             CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhc----CCCceEEEeeecccCC-CCCcchHHHH
Confidence            4478999999999999999988878889999999999999999999775    3457888999876654 5789999999


Q ss_pred             ccccCCCCHHH-HHHHHHHhhcCCCe
Q 020988          245 AALHCWPSPSN-AASVFSSSYSLLSI  269 (319)
Q Consensus       245 ~vl~h~~d~~~-~l~el~rvlk~g~~  269 (319)
                      -+++|+.+..+ ..-.+...+++++.
T Consensus       206 kti~~Le~q~kg~g~~ll~aL~~~~v  231 (281)
T 3lcv_B          206 KTLPCLETQQRGSGWEVIDIVNSPNI  231 (281)
T ss_dssp             TCHHHHHHHSTTHHHHHHHHSSCSEE
T ss_pred             HHHHHhhhhhhHHHHHHHHHhCCCCE
Confidence            99999965432 22245555555443

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.04  E-value=2e-10  Score=107.83  Aligned_cols=103  Identities=17%  Similarity=0.083  Sum_probs=74.3

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCC-CeEEEEcCCCCC-CC---CCCCcc
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTS-NLALVRADVCRL-PF---ASGFVD  239 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~-~i~~~~~d~~~l-p~---~~~~fD  239 (319)
                      .++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.|+++++.++  ... +++++++|+.+. +.   ...+||
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~--~~~~~v~~~~~D~~~~l~~~~~~~~~fD  287 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANH--LDMANHQLVVMDVFDYFKYARRHHLTYD  287 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTT--CCCTTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcC--CCccceEEEECCHHHHHHHHHHhCCCcc
Confidence            467899999999999999999865 2489999999999999999988753  122 799999998662 21   245899


Q ss_pred             EEEecccc-----cCCCCHHHH----HHHHHHhhcCCCee
Q 020988          240 AVHAGAAL-----HCWPSPSNA----ASVFSSSYSLLSIC  270 (319)
Q Consensus       240 ~V~~~~vl-----~h~~d~~~~----l~el~rvlk~g~~~  270 (319)
                      +|++.-..     .+..+....    ++++.++|+|+|..
T Consensus       288 ~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l  327 (385)
T 2b78_A          288 IIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLI  327 (385)
T ss_dssp             EEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEE
T ss_pred             EEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEE
Confidence            99985432     344454433    34445555555443

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=99.04  E-value=1.8e-09  Score=96.37  Aligned_cols=84  Identities=17%  Similarity=0.187  Sum_probs=70.2

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (319)
Q Consensus       154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (319)
                      ..+.+.+.+...++ +|||||||+|.++..+++.+.  +|+|+|+|+.+++.+++++..      .+++++.+|+.++++
T Consensus        35 i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~~--~V~avEid~~~~~~l~~~~~~------~~v~vi~~D~l~~~~  105 (271)
T 3fut_A           35 HLRRIVEAARPFTG-PVFEVGPGLGALTRALLEAGA--EVTAIEKDLRLRPVLEETLSG------LPVRLVFQDALLYPW  105 (271)
T ss_dssp             HHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTTC--CEEEEESCGGGHHHHHHHTTT------SSEEEEESCGGGSCG
T ss_pred             HHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcCC--EEEEEECCHHHHHHHHHhcCC------CCEEEEECChhhCCh
Confidence            34566667777778 999999999999999999875  999999999999999998742      489999999999887


Q ss_pred             CCC-CccEEEeccc
Q 020988          234 ASG-FVDAVHAGAA  246 (319)
Q Consensus       234 ~~~-~fD~V~~~~v  246 (319)
                      ++. .+|.|+++.-
T Consensus       106 ~~~~~~~~iv~NlP  119 (271)
T 3fut_A          106 EEVPQGSLLVANLP  119 (271)
T ss_dssp             GGSCTTEEEEEEEC
T ss_pred             hhccCccEEEecCc
Confidence            542 6888877643

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.04  E-value=1.4e-09  Score=103.89  Aligned_cols=127  Identities=13%  Similarity=0.065  Sum_probs=99.0

Q ss_pred             CCCCcHHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhC-------------CCCeEEEEeCCHHHHHHHHHHHhhc
Q 020988          147 GFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-------------TYSGVVALDFSENMLRQCYDFIKQD  213 (319)
Q Consensus       147 ~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g-------------~~~~v~gvD~s~~~l~~a~~~~~~~  213 (319)
                      .++.|....+.+.+.+.+.++.+|||.|||+|.++..+.+..             ...+++|+|+++.+++.|+.++...
T Consensus       152 ~fyTP~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~  231 (445)
T 2okc_A          152 QYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLH  231 (445)
T ss_dssp             GGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHT
T ss_pred             cccCcHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHh
Confidence            467888888888888887788899999999999998887642             1247999999999999999887654


Q ss_pred             CccCCCCeEEEEcCCCCCCCCCCCccEEEecccccCCCCH-----------------HHHHHHHHHhhcCCCeeEEEEe
Q 020988          214 NTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSP-----------------SNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       214 ~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~-----------------~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      +.. ..++.+.++|....+.. .+||+|+++-.+.+....                 ...++.+.++|+++|..++++.
T Consensus       232 g~~-~~~~~i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p  308 (445)
T 2okc_A          232 GIG-TDRSPIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP  308 (445)
T ss_dssp             TCC-SSCCSEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCC-cCCCCEeeCCCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence            211 01567899998877654 489999998766553321                 3678889999999988888775

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=98.99  E-value=2.4e-10  Score=107.09  Aligned_cols=101  Identities=19%  Similarity=0.117  Sum_probs=74.9

Q ss_pred             CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC----CCCCccEE
Q 020988          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF----ASGFVDAV  241 (319)
Q Consensus       166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~----~~~~fD~V  241 (319)
                      ++.+|||+|||+|.++..+++..  .+|+|+|+|+.+++.|+++++.++   ..++.++++|+.+...    .+++||+|
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~n~~~n~---~~~~~~~~~d~~~~~~~~~~~~~~fD~I  283 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALGF--REVVAVDSSAEALRRAEENARLNG---LGNVRVLEANAFDLLRRLEKEGERFDLV  283 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHHE--EEEEEEESCHHHHHHHHHHHHHTT---CTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             CCCeEEEeeeccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcC---CCCceEEECCHHHHHHHHHhcCCCeeEE
Confidence            67899999999999999999873  499999999999999999988753   3459999999876531    15789999


Q ss_pred             Eeccccc---------CCCCHHHHHHHHHHhhcCCCeeE
Q 020988          242 HAGAALH---------CWPSPSNAASVFSSSYSLLSICY  271 (319)
Q Consensus       242 ~~~~vl~---------h~~d~~~~l~el~rvlk~g~~~g  271 (319)
                      ++.-...         +..+....+.++.++|+|+|...
T Consensus       284 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~  322 (382)
T 1wxx_A          284 VLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILA  322 (382)
T ss_dssp             EECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred             EECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence            9843211         11223455666666766655433

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.98  E-value=7.4e-10  Score=111.42  Aligned_cols=105  Identities=12%  Similarity=0.085  Sum_probs=78.6

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC-CCCCCCCccEEEe
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFASGFVDAVHA  243 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~~~~~fD~V~~  243 (319)
                      .++.+|||+|||+|.++..+++.+. .+|+++|+|+.+++.|+++++.++.. ..+++++++|+.+ ++...++||+|++
T Consensus       538 ~~g~~VLDlg~GtG~~sl~aa~~ga-~~V~aVD~s~~al~~a~~N~~~ngl~-~~~v~~i~~D~~~~l~~~~~~fD~Ii~  615 (703)
T 3v97_A          538 SKGKDFLNLFSYTGSATVHAGLGGA-RSTTTVDMSRTYLEWAERNLRLNGLT-GRAHRLIQADCLAWLREANEQFDLIFI  615 (703)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCC-STTEEEEESCHHHHHHHCCCCEEEEEE
T ss_pred             cCCCcEEEeeechhHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCC-ccceEEEecCHHHHHHhcCCCccEEEE
Confidence            3688999999999999999988764 46999999999999999998875310 1479999999877 3444579999998


Q ss_pred             cc-----------cccCCCCHHHHHHHHHHhhcCCCeeE
Q 020988          244 GA-----------ALHCWPSPSNAASVFSSSYSLLSICY  271 (319)
Q Consensus       244 ~~-----------vl~h~~d~~~~l~el~rvlk~g~~~g  271 (319)
                      .-           ++++..+....++++.++|+|+|.+.
T Consensus       616 DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~  654 (703)
T 3v97_A          616 DPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIM  654 (703)
T ss_dssp             CCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             CCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEE
Confidence            54           22333344556667777777665443

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=98.98  E-value=4.6e-10  Score=105.64  Aligned_cols=102  Identities=15%  Similarity=0.051  Sum_probs=74.9

Q ss_pred             CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC----CCCCccEE
Q 020988          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF----ASGFVDAV  241 (319)
Q Consensus       166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~----~~~~fD~V  241 (319)
                      ++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.|+++++.++  ...+++++.+|+.+...    ..++||+|
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~g-~~~v~~vD~s~~~l~~a~~n~~~n~--~~~~v~~~~~d~~~~~~~~~~~~~~fD~V  293 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIAG-ADEVIGIDKSPRAIETAKENAKLNG--VEDRMKFIVGSAFEEMEKLQKKGEKFDIV  293 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTT--CGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcC--CCccceEEECCHHHHHHHHHhhCCCCCEE
Confidence            67899999999999999999874 3589999999999999999987753  11279999999876531    25689999


Q ss_pred             Eecccc---------cCCCCHHHHHHHHHHhhcCCCee
Q 020988          242 HAGAAL---------HCWPSPSNAASVFSSSYSLLSIC  270 (319)
Q Consensus       242 ~~~~vl---------~h~~d~~~~l~el~rvlk~g~~~  270 (319)
                      ++....         ++..+....+.++.++|+|+|..
T Consensus       294 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l  331 (396)
T 2as0_A          294 VLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGIL  331 (396)
T ss_dssp             EECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred             EECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEE
Confidence            985322         11123345556666666655443

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.98  E-value=2.1e-10  Score=104.30  Aligned_cols=104  Identities=13%  Similarity=0.061  Sum_probs=73.1

Q ss_pred             ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeC----CHHHHHHHHHHHhhcCccCCCCeEEEEc-CCCCCCCCCCCc
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDF----SENMLRQCYDFIKQDNTILTSNLALVRA-DVCRLPFASGFV  238 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~----s~~~l~~a~~~~~~~~~~~~~~i~~~~~-d~~~lp~~~~~f  238 (319)
                      ..++.+|||||||+|.++..+++. .  +|+|+|+    ++.+++.+.  ...   ...+++.++++ |+..++  .++|
T Consensus        80 ~~~g~~VLDlGcG~G~~s~~la~~-~--~V~gvD~~~~~~~~~~~~~~--~~~---~~~~~v~~~~~~D~~~l~--~~~f  149 (305)
T 2p41_A           80 VTPEGKVVDLGCGRGGWSYYCGGL-K--NVREVKGLTKGGPGHEEPIP--MST---YGWNLVRLQSGVDVFFIP--PERC  149 (305)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTS-T--TEEEEEEECCCSTTSCCCCC--CCS---TTGGGEEEECSCCTTTSC--CCCC
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHhc-C--CEEEEeccccCchhHHHHHH--hhh---cCCCCeEEEeccccccCC--cCCC
Confidence            356789999999999999999987 3  8999999    554432111  000   01247899999 888776  4689


Q ss_pred             cEEEeccccc---CCCCHH---HHHHHHHHhhcCCCeeEEEEeec
Q 020988          239 DAVHAGAALH---CWPSPS---NAASVFSSSYSLLSICYLLQFRY  277 (319)
Q Consensus       239 D~V~~~~vl~---h~~d~~---~~l~el~rvlk~g~~~g~~~~~~  277 (319)
                      |+|++..+++   +..+..   .+++++.++|||||.+.+-++..
T Consensus       150 D~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~  194 (305)
T 2p41_A          150 DTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP  194 (305)
T ss_dssp             SEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred             CEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence            9999976653   222222   46888889999999766655543

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=98.97  E-value=3.4e-09  Score=97.55  Aligned_cols=100  Identities=15%  Similarity=0.102  Sum_probs=77.9

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (319)
                      .++.+|||+|||+|.++.. ++.  ..+|+|+|+|+.+++.++++++.++  ...++.++.+|+.+..   ++||+|++.
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~~--~~~V~~vD~s~~ai~~a~~n~~~n~--l~~~v~~~~~D~~~~~---~~fD~Vi~d  265 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CKN--AKKIYAIDINPHAIELLKKNIKLNK--LEHKIIPILSDVREVD---VKGNRVIMN  265 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TTT--SSEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEESCGGGCC---CCEEEEEEC
T ss_pred             CCCCEEEEccCccCHHHHh-ccC--CCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEECChHHhc---CCCcEEEEC
Confidence            4688999999999999998 773  4599999999999999999988753  2257999999998775   789999985


Q ss_pred             ccccCCCCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988          245 AALHCWPSPSNAASVFSSSYSLLSICYLLQFR  276 (319)
Q Consensus       245 ~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~  276 (319)
                      ..-    ....+++++.++++++|......+.
T Consensus       266 pP~----~~~~~l~~~~~~L~~gG~l~~~~~~  293 (336)
T 2yx1_A          266 LPK----FAHKFIDKALDIVEEGGVIHYYTIG  293 (336)
T ss_dssp             CTT----TGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred             CcH----hHHHHHHHHHHHcCCCCEEEEEEee
Confidence            321    1236678888888876655444443

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.96  E-value=1.2e-08  Score=96.67  Aligned_cols=95  Identities=17%  Similarity=0.134  Sum_probs=72.3

Q ss_pred             ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (319)
                      ..++.+|||+|||+|.++..+++.+.  +|+|+|+|+.+++.|+++++.++   .. ++++.+|+.++..  .+||+|++
T Consensus       288 ~~~~~~VLDlgcG~G~~sl~la~~~~--~V~gvD~s~~ai~~A~~n~~~ng---l~-v~~~~~d~~~~~~--~~fD~Vv~  359 (425)
T 2jjq_A          288 LVEGEKILDMYSGVGTFGIYLAKRGF--NVKGFDSNEFAIEMARRNVEINN---VD-AEFEVASDREVSV--KGFDTVIV  359 (425)
T ss_dssp             HCCSSEEEEETCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHT---CC-EEEEECCTTTCCC--TTCSEEEE
T ss_pred             cCCCCEEEEeeccchHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcC---Cc-EEEEECChHHcCc--cCCCEEEE
Confidence            45678999999999999999998765  99999999999999999987652   23 8999999988753  28999998


Q ss_pred             cccccCCCCHHHHHHHHHHhhcCCCe
Q 020988          244 GAALHCWPSPSNAASVFSSSYSLLSI  269 (319)
Q Consensus       244 ~~vl~h~~d~~~~l~el~rvlk~g~~  269 (319)
                      ...-...  ...+++.+. .++|++.
T Consensus       360 dPPr~g~--~~~~~~~l~-~l~p~gi  382 (425)
T 2jjq_A          360 DPPRAGL--HPRLVKRLN-REKPGVI  382 (425)
T ss_dssp             CCCTTCS--CHHHHHHHH-HHCCSEE
T ss_pred             cCCccch--HHHHHHHHH-hcCCCcE
Confidence            5432222  123455554 3566553

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.96  E-value=1.6e-09  Score=102.41  Aligned_cols=118  Identities=13%  Similarity=0.086  Sum_probs=87.5

Q ss_pred             CCCCCcHHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEE
Q 020988          146 SGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV  224 (319)
Q Consensus       146 ~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~  224 (319)
                      ..++.|....+.+.+.+...++.+|||+|||+|.++..+++.. +..+++|+|+++.+++.|            .++.++
T Consensus        19 g~~~TP~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a------------~~~~~~   86 (421)
T 2ih2_A           19 GRVETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP------------PWAEGI   86 (421)
T ss_dssp             --CCCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC------------TTEEEE
T ss_pred             ceEeCCHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC------------CCCcEE
Confidence            3466777778888888866567899999999999999998763 446999999999988665            268899


Q ss_pred             EcCCCCCCCCCCCccEEEeccccc----------CCCCHH-------------------HHHHHHHHhhcCCCeeEEEEe
Q 020988          225 RADVCRLPFASGFVDAVHAGAALH----------CWPSPS-------------------NAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       225 ~~d~~~lp~~~~~fD~V~~~~vl~----------h~~d~~-------------------~~l~el~rvlk~g~~~g~~~~  275 (319)
                      ++|+...+. +++||+|+++-...          |+.+..                   .+++.+.++|+++|...+++.
T Consensus        87 ~~D~~~~~~-~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p  165 (421)
T 2ih2_A           87 LADFLLWEP-GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP  165 (421)
T ss_dssp             ESCGGGCCC-SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eCChhhcCc-cCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEC
Confidence            999987653 46899999963221          122211                   346778888888887777766


Q ss_pred             e
Q 020988          276 R  276 (319)
Q Consensus       276 ~  276 (319)
                      .
T Consensus       166 ~  166 (421)
T 2ih2_A          166 A  166 (421)
T ss_dssp             G
T ss_pred             h
Confidence            4

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=98.95  E-value=6.4e-10  Score=106.16  Aligned_cols=85  Identities=16%  Similarity=0.132  Sum_probs=69.9

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-C
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-F  233 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~  233 (319)
                      ..+...+...++.+|||+|||+|..+..+++... ...|+++|+|+.+++.++++++..+   ..++.++.+|+..++ .
T Consensus        95 ~l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g---~~nv~v~~~Da~~l~~~  171 (456)
T 3m4x_A           95 MIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWG---VSNAIVTNHAPAELVPH  171 (456)
T ss_dssp             HHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHT---CSSEEEECCCHHHHHHH
T ss_pred             HHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCceEEEeCCHHHhhhh
Confidence            4455566778899999999999999999987632 3589999999999999999998763   457999999987764 2


Q ss_pred             CCCCccEEEe
Q 020988          234 ASGFVDAVHA  243 (319)
Q Consensus       234 ~~~~fD~V~~  243 (319)
                      .+++||+|++
T Consensus       172 ~~~~FD~Il~  181 (456)
T 3m4x_A          172 FSGFFDRIVV  181 (456)
T ss_dssp             HTTCEEEEEE
T ss_pred             ccccCCEEEE
Confidence            3578999997

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.95  E-value=1.3e-09  Score=98.81  Aligned_cols=86  Identities=16%  Similarity=0.276  Sum_probs=71.1

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC--C
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--F  233 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~  233 (319)
                      +.+.+.+...++++|||+|||+|.++..+++..+..+|+|+|+|+.+++.|++++...+    .++.++++|+.+++  +
T Consensus        16 ~e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g----~~v~~v~~d~~~l~~~l   91 (301)
T 1m6y_A           16 REVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS----DRVSLFKVSYREADFLL   91 (301)
T ss_dssp             HHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT----TTEEEEECCGGGHHHHH
T ss_pred             HHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC----CcEEEEECCHHHHHHHH
Confidence            34556666778899999999999999999998655699999999999999999987642    58999999998875  2


Q ss_pred             C---CCCccEEEecc
Q 020988          234 A---SGFVDAVHAGA  245 (319)
Q Consensus       234 ~---~~~fD~V~~~~  245 (319)
                      .   ..+||.|++..
T Consensus        92 ~~~g~~~~D~Vl~D~  106 (301)
T 1m6y_A           92 KTLGIEKVDGILMDL  106 (301)
T ss_dssp             HHTTCSCEEEEEEEC
T ss_pred             HhcCCCCCCEEEEcC
Confidence            2   15899999754

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=98.94  E-value=2.5e-09  Score=100.45  Aligned_cols=100  Identities=12%  Similarity=-0.005  Sum_probs=71.5

Q ss_pred             CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-CCCCCccEEEec
Q 020988          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDAVHAG  244 (319)
Q Consensus       166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~V~~~  244 (319)
                      ++.+|||+|||+|.++..+++.+.  .|+++|+|+.+++.|+++++.++    ....+.++|+.+.. ...+.||+|++.
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~ga--~V~avDis~~al~~a~~n~~~ng----~~~~~~~~D~~~~l~~~~~~fD~Ii~d  287 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARKGA--YALAVDKDLEALGVLDQAALRLG----LRVDIRHGEALPTLRGLEGPFHHVLLD  287 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHT----CCCEEEESCHHHHHHTCCCCEEEEEEC
T ss_pred             CCCeEEEcccchhHHHHHHHHcCC--eEEEEECCHHHHHHHHHHHHHhC----CCCcEEEccHHHHHHHhcCCCCEEEEC
Confidence            588999999999999999999876  69999999999999999987763    12356788887642 213349999986


Q ss_pred             ccccC---------CCCHHHHHHHHHHhhcCCCeeE
Q 020988          245 AALHC---------WPSPSNAASVFSSSYSLLSICY  271 (319)
Q Consensus       245 ~vl~h---------~~d~~~~l~el~rvlk~g~~~g  271 (319)
                      .....         ..+...+++.+.++|+|+|.+.
T Consensus       288 pP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv  323 (393)
T 4dmg_A          288 PPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLW  323 (393)
T ss_dssp             CCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred             CCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence            43211         1122355666666666655443

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=98.94  E-value=4.2e-09  Score=98.93  Aligned_cols=112  Identities=12%  Similarity=0.066  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCC--------------------------------------CeE
Q 020988          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY--------------------------------------SGV  193 (319)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~--------------------------------------~~v  193 (319)
                      +.....+.......++..|||.+||+|.++..++..+.+                                      .+|
T Consensus       187 e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V  266 (393)
T 3k0b_A          187 ETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNI  266 (393)
T ss_dssp             HHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCE
T ss_pred             HHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceE
Confidence            333455555556667889999999999999888876432                                      469


Q ss_pred             EEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEeccccc-CC---CCHHHHHHHHHHhhcC
Q 020988          194 VALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALH-CW---PSPSNAASVFSSSYSL  266 (319)
Q Consensus       194 ~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~-h~---~d~~~~l~el~rvlk~  266 (319)
                      +|+|+|+.+++.|++++...+  ...+++++++|+.+++.+ .+||+|+++--+. .+   .+...+.+++.+++|+
T Consensus       267 ~GvDid~~al~~Ar~Na~~~g--l~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~  340 (393)
T 3k0b_A          267 IGGDIDARLIEIAKQNAVEAG--LGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKR  340 (393)
T ss_dssp             EEEESCHHHHHHHHHHHHHTT--CTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEECCHHHHHHHHHHHHHcC--CCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhc
Confidence            999999999999999988753  234699999999998765 5899999984321 12   1233456667777777

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.93  E-value=3.3e-09  Score=99.43  Aligned_cols=111  Identities=14%  Similarity=0.084  Sum_probs=83.6

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCC--------------------------------------CeEEE
Q 020988          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY--------------------------------------SGVVA  195 (319)
Q Consensus       154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~--------------------------------------~~v~g  195 (319)
                      ....+.......++.+|||++||+|.++..++..+.+                                      .+|+|
T Consensus       183 lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G  262 (385)
T 3ldu_A          183 LAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYG  262 (385)
T ss_dssp             HHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEE
T ss_pred             HHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEE
Confidence            3455555555667889999999999999998876432                                      47999


Q ss_pred             EeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEeccccc-CC---CCHHHHHHHHHHhhcCC
Q 020988          196 LDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALH-CW---PSPSNAASVFSSSYSLL  267 (319)
Q Consensus       196 vD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~-h~---~d~~~~l~el~rvlk~g  267 (319)
                      +|+++.+++.|++++...+  ...++++.++|+.+++.+ .+||+|+++--+. .+   .+...+.+++.+++|+.
T Consensus       263 vDid~~ai~~Ar~Na~~~g--l~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~  335 (385)
T 3ldu_A          263 YDIDEESIDIARENAEIAG--VDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKL  335 (385)
T ss_dssp             EESCHHHHHHHHHHHHHHT--CGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTS
T ss_pred             EECCHHHHHHHHHHHHHcC--CCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhC
Confidence            9999999999999987753  224799999999998764 5899999976432 22   12345566777788873

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=98.92  E-value=9.9e-09  Score=96.06  Aligned_cols=110  Identities=13%  Similarity=0.107  Sum_probs=83.2

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCC--------------------------------------CeEEE
Q 020988          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY--------------------------------------SGVVA  195 (319)
Q Consensus       154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~--------------------------------------~~v~g  195 (319)
                      ....+.......++..|||.+||+|.++..++..+.+                                      .+++|
T Consensus       182 LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~G  261 (384)
T 3ldg_A          182 MAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISG  261 (384)
T ss_dssp             HHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred             HHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEE
Confidence            3455555556667889999999999999888876432                                      46999


Q ss_pred             EeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEeccccc-CCC---CHHHHHHHHHHhhcC
Q 020988          196 LDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALH-CWP---SPSNAASVFSSSYSL  266 (319)
Q Consensus       196 vD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~-h~~---d~~~~l~el~rvlk~  266 (319)
                      +|+|+.+++.|++++...+  ....++++++|+.+++.+ .+||+|+++--.. -+.   +...+.+++.+.+|.
T Consensus       262 vDid~~al~~Ar~Na~~~g--l~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~  333 (384)
T 3ldg_A          262 FDFDGRMVEIARKNAREVG--LEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAP  333 (384)
T ss_dssp             EESCHHHHHHHHHHHHHTT--CTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTT
T ss_pred             EECCHHHHHHHHHHHHHcC--CCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhh
Confidence            9999999999999998753  234699999999998765 5899999974332 232   234556677778887

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.87  E-value=5.6e-09  Score=93.57  Aligned_cols=74  Identities=15%  Similarity=0.222  Sum_probs=61.6

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCC--CeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY--SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (319)
                      .+.+.+.+...++.+|||||||+|.++..+++.+..  .+|+|+|+|+.+++.++++. .      .+++++.+|+.+++
T Consensus        31 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-~------~~v~~i~~D~~~~~  103 (279)
T 3uzu_A           31 IDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-G------ELLELHAGDALTFD  103 (279)
T ss_dssp             HHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-G------GGEEEEESCGGGCC
T ss_pred             HHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-C------CCcEEEECChhcCC
Confidence            455666777778899999999999999999998761  23999999999999999884 2      48999999999988


Q ss_pred             CCC
Q 020988          233 FAS  235 (319)
Q Consensus       233 ~~~  235 (319)
                      +++
T Consensus       104 ~~~  106 (279)
T 3uzu_A          104 FGS  106 (279)
T ss_dssp             GGG
T ss_pred             hhH
Confidence            653

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.86  E-value=9.9e-09  Score=90.47  Aligned_cols=88  Identities=16%  Similarity=0.271  Sum_probs=67.3

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (319)
                      .+.+.+.+...++.+|||||||+|.++..+++.+ ..+|+|+|+|+.+++.++++ .      ..+++++.+|+.+++++
T Consensus        20 ~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~-~~~v~avEid~~~~~~~~~~-~------~~~v~~i~~D~~~~~~~   91 (249)
T 3ftd_A           20 LKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHP-LKKLYVIELDREMVENLKSI-G------DERLEVINEDASKFPFC   91 (249)
T ss_dssp             HHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSC-CSEEEEECCCHHHHHHHTTS-C------CTTEEEECSCTTTCCGG
T ss_pred             HHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcC-CCeEEEEECCHHHHHHHHhc-c------CCCeEEEEcchhhCChh
Confidence            4556666777788999999999999999999884 35999999999999999876 2      35899999999998876


Q ss_pred             CCCccEEEecccccCC
Q 020988          235 SGFVDAVHAGAALHCW  250 (319)
Q Consensus       235 ~~~fD~V~~~~vl~h~  250 (319)
                      +..-+.++..+.-.++
T Consensus        92 ~~~~~~~vv~NlPy~i  107 (249)
T 3ftd_A           92 SLGKELKVVGNLPYNV  107 (249)
T ss_dssp             GSCSSEEEEEECCTTT
T ss_pred             HccCCcEEEEECchhc
Confidence            4211334444444444

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.86  E-value=8.2e-10  Score=97.96  Aligned_cols=89  Identities=16%  Similarity=0.124  Sum_probs=67.1

Q ss_pred             HHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCH-------HHHHHHHHHHhhcCccCCCCeEEEEcCCCC
Q 020988          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSE-------NMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (319)
Q Consensus       158 l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~-------~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (319)
                      +...+...++.+|||+|||+|.++..+++.+.  +|+|+|+++       .+++.|+++.+.++  ...+++++.+|+.+
T Consensus        75 l~~a~~~~~~~~VLDlgcG~G~~a~~lA~~g~--~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~--~~~ri~~~~~d~~~  150 (258)
T 2r6z_A           75 IAKAVNHTAHPTVWDATAGLGRDSFVLASLGL--TVTAFEQHPAVACLLSDGIRRALLNPETQD--TAARINLHFGNAAE  150 (258)
T ss_dssp             HHHHTTGGGCCCEEETTCTTCHHHHHHHHTTC--CEEEEECCHHHHHHHHHHHHHHHHSHHHHH--HHTTEEEEESCHHH
T ss_pred             HHHHhCcCCcCeEEEeeCccCHHHHHHHHhCC--EEEEEECChhhhHHHHHHHHHHHhHHHhhC--CccCeEEEECCHHH
Confidence            33444445678999999999999999999865  999999999       99999987765432  11359999999977


Q ss_pred             C-C-CCC--CCccEEEecccccCC
Q 020988          231 L-P-FAS--GFVDAVHAGAALHCW  250 (319)
Q Consensus       231 l-p-~~~--~~fD~V~~~~vl~h~  250 (319)
                      + + +++  ++||+|++.-.+.|.
T Consensus       151 ~l~~~~~~~~~fD~V~~dP~~~~~  174 (258)
T 2r6z_A          151 QMPALVKTQGKPDIVYLDPMYPER  174 (258)
T ss_dssp             HHHHHHHHHCCCSEEEECCCC---
T ss_pred             HHHhhhccCCCccEEEECCCCCCc
Confidence            4 3 333  689999998766653

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.81  E-value=2.4e-08  Score=90.82  Aligned_cols=84  Identities=13%  Similarity=0.177  Sum_probs=69.1

Q ss_pred             HHHHHhhccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (319)
Q Consensus       157 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (319)
                      .+...+...++.+|||+|||+|..+..+++. +...+|+++|+++.+++.++++++..+   ..++.++.+|+.+++...
T Consensus        93 l~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g---~~~v~~~~~D~~~~~~~~  169 (309)
T 2b9e_A           93 LPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAG---VSCCELAEEDFLAVSPSD  169 (309)
T ss_dssp             HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT---CCSEEEEECCGGGSCTTC
T ss_pred             HHHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCeEEEEeCChHhcCccc
Confidence            4445666778999999999999999999886 344699999999999999999998753   357999999998775432


Q ss_pred             ---CCccEEEe
Q 020988          236 ---GFVDAVHA  243 (319)
Q Consensus       236 ---~~fD~V~~  243 (319)
                         .+||.|++
T Consensus       170 ~~~~~fD~Vl~  180 (309)
T 2b9e_A          170 PRYHEVHYILL  180 (309)
T ss_dssp             GGGTTEEEEEE
T ss_pred             cccCCCCEEEE
Confidence               57999997

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.80  E-value=9.7e-09  Score=92.38  Aligned_cols=95  Identities=12%  Similarity=-0.018  Sum_probs=68.4

Q ss_pred             hccCCCeEEEEcCCc------ChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEE-EEcCCCCCCCC
Q 020988          163 KSAQGGLLVDVSCGS------GLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLAL-VRADVCRLPFA  234 (319)
Q Consensus       163 ~~~~~~~VLDiGcG~------G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~-~~~d~~~lp~~  234 (319)
                      ...++.+|||+|||+      |.  ..+++. ++..+|+|+|+|+.        +        .++++ +++|+.++++.
T Consensus        60 ~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~--------v--------~~v~~~i~gD~~~~~~~  121 (290)
T 2xyq_A           60 AVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF--------V--------SDADSTLIGDCATVHTA  121 (290)
T ss_dssp             CCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC--------B--------CSSSEEEESCGGGCCCS
T ss_pred             CCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC--------C--------CCCEEEEECccccCCcc
Confidence            346788999999944      65  334444 33469999999997        1        26778 99999988764


Q ss_pred             CCCccEEEecccccC-----------CCCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988          235 SGFVDAVHAGAALHC-----------WPSPSNAASVFSSSYSLLSICYLLQFR  276 (319)
Q Consensus       235 ~~~fD~V~~~~vl~h-----------~~d~~~~l~el~rvlk~g~~~g~~~~~  276 (319)
                       ++||+|++....+.           ......+++++.++|||||.+.+.++.
T Consensus       122 -~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~  173 (290)
T 2xyq_A          122 -NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITE  173 (290)
T ss_dssp             -SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred             -CcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence             68999999643221           111247889999999998887776664

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=98.79  E-value=1.5e-08  Score=94.33  Aligned_cols=103  Identities=16%  Similarity=0.209  Sum_probs=74.0

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC--
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--  232 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--  232 (319)
                      ...+.+.+.. .+.+|||+|||+|.++..+++...  +|+|+|+|+.+++.|+++++.++   ..+++++.+|+.++.  
T Consensus       203 ~~~~~~~~~~-~~~~vLDl~cG~G~~~l~la~~~~--~V~gvd~~~~ai~~a~~n~~~ng---~~~v~~~~~d~~~~~~~  276 (369)
T 3bt7_A          203 LEWALDVTKG-SKGDLLELYCGNGNFSLALARNFD--RVLATEIAKPSVAAAQYNIAANH---IDNVQIIRMAAEEFTQA  276 (369)
T ss_dssp             HHHHHHHTTT-CCSEEEEESCTTSHHHHHHGGGSS--EEEEECCCHHHHHHHHHHHHHTT---CCSEEEECCCSHHHHHH
T ss_pred             HHHHHHHhhc-CCCEEEEccCCCCHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcC---CCceEEEECCHHHHHHH
Confidence            3444444443 357899999999999999988654  99999999999999999987753   358999999987642  


Q ss_pred             CCC--------------CCccEEEecccccCCCCHHHHHHHHHHhhcCCCe
Q 020988          233 FAS--------------GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSI  269 (319)
Q Consensus       233 ~~~--------------~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~  269 (319)
                      +..              .+||+|++.---.      .+..++.+++++++.
T Consensus       277 ~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~------g~~~~~~~~l~~~g~  321 (369)
T 3bt7_A          277 MNGVREFNRLQGIDLKSYQCETIFVDPPRS------GLDSETEKMVQAYPR  321 (369)
T ss_dssp             HSSCCCCTTGGGSCGGGCCEEEEEECCCTT------CCCHHHHHHHTTSSE
T ss_pred             HhhccccccccccccccCCCCEEEECcCcc------ccHHHHHHHHhCCCE
Confidence            121              3799998742211      123456666665553

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.77  E-value=5e-09  Score=92.54  Aligned_cols=84  Identities=8%  Similarity=0.121  Sum_probs=63.0

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (319)
                      .+.+.+.+...++.+|||||||+|.++. +. .+...+|+|+|+++.+++.+++++..     ..+++++.+|+..++++
T Consensus        10 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~-----~~~v~~i~~D~~~~~~~   82 (252)
T 1qyr_A           10 IDSIVSAINPQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFL-----GPKLTIYQQDAMTFNFG   82 (252)
T ss_dssp             HHHHHHHHCCCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTT-----GGGEEEECSCGGGCCHH
T ss_pred             HHHHHHhcCCCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhcc-----CCceEEEECchhhCCHH
Confidence            3455566666788899999999999999 65 45522299999999999999987643     24899999999988764


Q ss_pred             CC-----CccEEEecc
Q 020988          235 SG-----FVDAVHAGA  245 (319)
Q Consensus       235 ~~-----~fD~V~~~~  245 (319)
                      +.     ..|.|+++-
T Consensus        83 ~~~~~~~~~~~vvsNl   98 (252)
T 1qyr_A           83 ELAEKMGQPLRVFGNL   98 (252)
T ss_dssp             HHHHHHTSCEEEEEEC
T ss_pred             HhhcccCCceEEEECC
Confidence            31     235666553

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.75  E-value=2.1e-08  Score=97.90  Aligned_cols=127  Identities=8%  Similarity=-0.040  Sum_probs=96.4

Q ss_pred             CCCCCcHHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCC------------------CCeEEEEeCCHHHHHHHH
Q 020988          146 SGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT------------------YSGVVALDFSENMLRQCY  207 (319)
Q Consensus       146 ~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~------------------~~~v~gvD~s~~~l~~a~  207 (319)
                      ..++.|....+.+.+.+.+.++.+|||.+||+|.++..+.+...                  ...++|+|+++.+++.|+
T Consensus       149 G~fyTP~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~  228 (541)
T 2ar0_A          149 GQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLAL  228 (541)
T ss_dssp             -CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHH
T ss_pred             CeeeCCHHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHH
Confidence            45788888888888888877888999999999999988776420                  137999999999999999


Q ss_pred             HHHhhcCccCCCC-----eEEEEcCCCCCC-CCCCCccEEEecccccCCCC--------------HHHHHHHHHHhhcCC
Q 020988          208 DFIKQDNTILTSN-----LALVRADVCRLP-FASGFVDAVHAGAALHCWPS--------------PSNAASVFSSSYSLL  267 (319)
Q Consensus       208 ~~~~~~~~~~~~~-----i~~~~~d~~~lp-~~~~~fD~V~~~~vl~h~~d--------------~~~~l~el~rvlk~g  267 (319)
                      .++.-.+   ...     +.+.++|....+ ....+||+|+++-.+.....              ....++.+.+.|+++
T Consensus       229 ~nl~l~g---i~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~g  305 (541)
T 2ar0_A          229 MNCLLHD---IEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPG  305 (541)
T ss_dssp             HHHHTTT---CCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEE
T ss_pred             HHHHHhC---CCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCC
Confidence            8875442   222     678899986643 34578999999765443321              135788889999999


Q ss_pred             CeeEEEEe
Q 020988          268 SICYLLQF  275 (319)
Q Consensus       268 ~~~g~~~~  275 (319)
                      |..++++.
T Consensus       306 Gr~a~V~p  313 (541)
T 2ar0_A          306 GRAAVVVP  313 (541)
T ss_dssp             EEEEEEEE
T ss_pred             CEEEEEec
Confidence            88888876

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=98.73  E-value=2.2e-08  Score=93.47  Aligned_cols=101  Identities=15%  Similarity=0.096  Sum_probs=75.7

Q ss_pred             CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCcc------------CCCCeEEEEcCCCCCCC
Q 020988          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI------------LTSNLALVRADVCRLPF  233 (319)
Q Consensus       166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~------------~~~~i~~~~~d~~~lp~  233 (319)
                      ++.+|||+|||+|.++..+++..+..+|+++|+++.+++.++++++.++..            ...+++++.+|+..+..
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~  126 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  126 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence            678999999999999999998855568999999999999999999775100            12348999999866421


Q ss_pred             -CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCee
Q 020988          234 -ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSIC  270 (319)
Q Consensus       234 -~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~  270 (319)
                       ..++||+|++.- .   ..+...+..+.+.++++|..
T Consensus       127 ~~~~~fD~I~lDP-~---~~~~~~l~~a~~~lk~gG~l  160 (378)
T 2dul_A          127 ERHRYFHFIDLDP-F---GSPMEFLDTALRSAKRRGIL  160 (378)
T ss_dssp             HSTTCEEEEEECC-S---SCCHHHHHHHHHHEEEEEEE
T ss_pred             hccCCCCEEEeCC-C---CCHHHHHHHHHHhcCCCCEE
Confidence             135799999532 1   23467778888887776643

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.65  E-value=4.4e-08  Score=86.64  Aligned_cols=109  Identities=16%  Similarity=0.040  Sum_probs=72.0

Q ss_pred             HHHHHHhhccCC--CeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCcc------CCCCeEEEEcC
Q 020988          156 KMAQEYFKSAQG--GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI------LTSNLALVRAD  227 (319)
Q Consensus       156 ~~l~~~l~~~~~--~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~------~~~~i~~~~~d  227 (319)
                      +.+.+.+...++  .+|||++||+|..+..++..+.  +|+++|+++.+.+.+++.++.....      ...+++++.+|
T Consensus        76 e~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~g~--~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D  153 (258)
T 2oyr_A           76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC--RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS  153 (258)
T ss_dssp             SHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTC--CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESC
T ss_pred             HHHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECC
Confidence            344556655566  8999999999999999999876  8999999998876666654321100      01378999999


Q ss_pred             CCC-CCCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCC
Q 020988          228 VCR-LPFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLL  267 (319)
Q Consensus       228 ~~~-lp~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g  267 (319)
                      ..+ ++...++||+|++.-.+.+- ....++++..++++++
T Consensus       154 ~~~~L~~~~~~fDvV~lDP~y~~~-~~saavkk~~~~lr~l  193 (258)
T 2oyr_A          154 SLTALTDITPRPQVVYLDPMFPHK-QKSALVKKEMRVFQSL  193 (258)
T ss_dssp             HHHHSTTCSSCCSEEEECCCCCCC-CC-----HHHHHHHHH
T ss_pred             HHHHHHhCcccCCEEEEcCCCCCc-ccchHHHHHHHHHHHh
Confidence            876 33222479999998777663 3233344444444443

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.63  E-value=2.3e-08  Score=94.00  Aligned_cols=74  Identities=12%  Similarity=0.159  Sum_probs=62.6

Q ss_pred             CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhc--CccCCCCeEEEEcCCCCC-CC-CCCCccEE
Q 020988          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD--NTILTSNLALVRADVCRL-PF-ASGFVDAV  241 (319)
Q Consensus       166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~--~~~~~~~i~~~~~d~~~l-p~-~~~~fD~V  241 (319)
                      ++.+|||+|||+|..+..+++.+.  +|+|+|+|+.+++.|+++++..  +   ..+++++++|+.+. +. .+++||+|
T Consensus        93 ~g~~VLDLgcG~G~~al~LA~~g~--~V~~VD~s~~~l~~Ar~N~~~~~~g---l~~i~~i~~Da~~~L~~~~~~~fDvV  167 (410)
T 3ll7_A           93 EGTKVVDLTGGLGIDFIALMSKAS--QGIYIERNDETAVAARHNIPLLLNE---GKDVNILTGDFKEYLPLIKTFHPDYI  167 (410)
T ss_dssp             TTCEEEESSCSSSHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHHSCT---TCEEEEEESCGGGSHHHHHHHCCSEE
T ss_pred             CCCEEEEeCCCchHHHHHHHhcCC--EEEEEECCHHHHHHHHHhHHHhccC---CCcEEEEECcHHHhhhhccCCCceEE
Confidence            478999999999999999988865  9999999999999999998764  2   25799999999874 32 23589999


Q ss_pred             Eec
Q 020988          242 HAG  244 (319)
Q Consensus       242 ~~~  244 (319)
                      ++.
T Consensus       168 ~lD  170 (410)
T 3ll7_A          168 YVD  170 (410)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            984

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.61  E-value=1.1e-07  Score=89.04  Aligned_cols=98  Identities=13%  Similarity=0.051  Sum_probs=73.8

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCC-CeEEEEeCCHHHHHHHHHHHhhcCccCCCC-eEEEEcCCCCCC--CCCCCccE
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSN-LALVRADVCRLP--FASGFVDA  240 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~-i~~~~~d~~~lp--~~~~~fD~  240 (319)
                      .++.+|||++||+|.++..+++.... .+|+++|+++.+++.++++++.++  ...+ ++++.+|+.++-  ...+.||+
T Consensus        51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ng--l~~~~v~v~~~Da~~~l~~~~~~~fD~  128 (392)
T 3axs_A           51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNN--IPEDRYEIHGMEANFFLRKEWGFGFDY  128 (392)
T ss_dssp             CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTT--CCGGGEEEECSCHHHHHHSCCSSCEEE
T ss_pred             CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhC--CCCceEEEEeCCHHHHHHHhhCCCCcE
Confidence            46789999999999999999986322 589999999999999999998763  1223 899999985531  12467999


Q ss_pred             EEecccccCCCCHHHHHHHHHHhhcCCC
Q 020988          241 VHAGAALHCWPSPSNAASVFSSSYSLLS  268 (319)
Q Consensus       241 V~~~~vl~h~~d~~~~l~el~rvlk~g~  268 (319)
                      |++.-    ...+...+..+.++++++|
T Consensus       129 V~lDP----~g~~~~~l~~a~~~Lk~gG  152 (392)
T 3axs_A          129 VDLDP----FGTPVPFIESVALSMKRGG  152 (392)
T ss_dssp             EEECC----SSCCHHHHHHHHHHEEEEE
T ss_pred             EEECC----CcCHHHHHHHHHHHhCCCC
Confidence            99864    1233556777777776655

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.58  E-value=3.4e-07  Score=92.13  Aligned_cols=121  Identities=15%  Similarity=0.055  Sum_probs=83.5

Q ss_pred             HHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhC------------------------------------------CC
Q 020988          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG------------------------------------------TY  190 (319)
Q Consensus       153 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g------------------------------------------~~  190 (319)
                      .....+.......++.+|||.+||+|.++..++..+                                          +.
T Consensus       177 ~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~  256 (703)
T 3v97_A          177 TLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYS  256 (703)
T ss_dssp             HHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCC
Confidence            345555566666678899999999999998887652                                          12


Q ss_pred             CeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC--CCCCCCccEEEeccccc-CCC---CHHHHHHHHHHhh
Q 020988          191 SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAVHAGAALH-CWP---SPSNAASVFSSSY  264 (319)
Q Consensus       191 ~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD~V~~~~vl~-h~~---d~~~~l~el~rvl  264 (319)
                      ..++|+|+++.+++.|++++...+  ....+++.++|+.++  |..+++||+|+++--.. -+.   +.....+.+.+++
T Consensus       257 ~~i~G~Did~~av~~A~~N~~~ag--v~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~l  334 (703)
T 3v97_A          257 SHFYGSDSDARVIQRARTNARLAG--IGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIM  334 (703)
T ss_dssp             CCEEEEESCHHHHHHHHHHHHHTT--CGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHH
T ss_pred             ccEEEEECCHHHHHHHHHHHHHcC--CCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHH
Confidence            479999999999999999998763  233589999999887  33344899999984322 111   2234444444444


Q ss_pred             ---cCCCeeEEEEe
Q 020988          265 ---SLLSICYLLQF  275 (319)
Q Consensus       265 ---k~g~~~g~~~~  275 (319)
                         .+|+..+++..
T Consensus       335 k~~~~g~~~~ilt~  348 (703)
T 3v97_A          335 KNQFGGWNLSLFSA  348 (703)
T ss_dssp             HHHCTTCEEEEEES
T ss_pred             HhhCCCCeEEEEeC
Confidence               46766666544

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.58  E-value=6.4e-07  Score=87.31  Aligned_cols=147  Identities=14%  Similarity=-0.008  Sum_probs=105.9

Q ss_pred             chhhHHhHHhHHHhhh-----hCCCCCcHHHHHHHHHHhh----ccCCCeEEEEcCCcChHHHHHHhhC---CCCeEEEE
Q 020988          129 PFVSFLYERGWRQNFN-----RSGFPGPDEEFKMAQEYFK----SAQGGLLVDVSCGSGLFSRKFAKSG---TYSGVVAL  196 (319)
Q Consensus       129 ~~~s~~~~~~w~~~~~-----~~~~~~~~~~~~~l~~~l~----~~~~~~VLDiGcG~G~~~~~l~~~g---~~~~v~gv  196 (319)
                      +.+...|+...++...     ...|+.|....+.+.+.+.    +.++.+|||.+||+|.++..+.+..   ....++|+
T Consensus       175 D~lG~~YE~ll~~~a~~~~k~~G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~  254 (542)
T 3lkd_A          175 DMLGDAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQ  254 (542)
T ss_dssp             THHHHHHHHHHHHHHCC---CCSSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEE
T ss_pred             hHHHHHHHHHHHHHHHHhcccCCeecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEE
Confidence            4455556655443221     2458899999999988887    4578899999999999998887762   24589999


Q ss_pred             eCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC--C-CCCCCccEEEeccccc--C-----------------CC---
Q 020988          197 DFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--P-FASGFVDAVHAGAALH--C-----------------WP---  251 (319)
Q Consensus       197 D~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p-~~~~~fD~V~~~~vl~--h-----------------~~---  251 (319)
                      |+++.+++.|+.++.-.+. ...++.+.++|....  | .....||+|+++--+.  +                 ++   
T Consensus       255 Eid~~~~~lA~~Nl~l~gi-~~~~~~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s  333 (542)
T 3lkd_A          255 ELNTSTYNLARMNMILHGV-PIENQFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKS  333 (542)
T ss_dssp             ESCHHHHHHHHHHHHHTTC-CGGGEEEEESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTT
T ss_pred             ECcHHHHHHHHHHHHHcCC-CcCccceEecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCc
Confidence            9999999999988755421 013678999998766  3 3467899999863221  0                 11   


Q ss_pred             C-HHHHHHHHHHhhc-CCCeeEEEEee
Q 020988          252 S-PSNAASVFSSSYS-LLSICYLLQFR  276 (319)
Q Consensus       252 d-~~~~l~el~rvlk-~g~~~g~~~~~  276 (319)
                      + .-..++.+.+.|+ ++|..++++..
T Consensus       334 ~~~~~Fl~~~l~~Lk~~gGr~a~VlP~  360 (542)
T 3lkd_A          334 KADFAFLLHGYYHLKQDNGVMAIVLPH  360 (542)
T ss_dssp             CCHHHHHHHHHHTBCTTTCEEEEEEET
T ss_pred             hhhHHHHHHHHHHhCCCceeEEEEecc
Confidence            0 1236888899999 99999988873

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.56  E-value=2.6e-07  Score=91.11  Aligned_cols=101  Identities=10%  Similarity=-0.027  Sum_probs=67.8

Q ss_pred             CCeEEEEcCCcChHHHHHHhhC----CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEE
Q 020988          167 GGLLVDVSCGSGLFSRKFAKSG----TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH  242 (319)
Q Consensus       167 ~~~VLDiGcG~G~~~~~l~~~g----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~  242 (319)
                      ...|||||||+|-+.....+.+    ...+|++||-|+ +...+++..+.++  ...+|+++.+|++++..+ +++|+|+
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~--~~dkVtVI~gd~eev~LP-EKVDIIV  433 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEE--WGSQVTVVSSDMREWVAP-EKADIIV  433 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHT--TGGGEEEEESCTTTCCCS-SCEEEEE
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhcc--CCCeEEEEeCcceeccCC-cccCEEE
Confidence            3579999999998854444432    223689999998 5667887776664  467899999999998776 6899999


Q ss_pred             ecc---cccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          243 AGA---ALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       243 ~~~---vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      +-.   .+-+-.-+ ..+....|.||   ++|+++.
T Consensus       434 SEwMG~fLl~E~ml-evL~Ardr~LK---PgGimiP  465 (637)
T 4gqb_A          434 SELLGSFADNELSP-ECLDGAQHFLK---DDGVSIP  465 (637)
T ss_dssp             CCCCBTTBGGGCHH-HHHHHHGGGEE---EEEEEES
T ss_pred             EEcCcccccccCCH-HHHHHHHHhcC---CCcEEcc
Confidence            832   11111122 34444444554   5566655

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.51  E-value=2.4e-07  Score=90.47  Aligned_cols=144  Identities=15%  Similarity=0.010  Sum_probs=99.8

Q ss_pred             chhhHHhHHhHHHhhh-----hCCCCCcHHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCC--------------
Q 020988          129 PFVSFLYERGWRQNFN-----RSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT--------------  189 (319)
Q Consensus       129 ~~~s~~~~~~w~~~~~-----~~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~--------------  189 (319)
                      +.+...|+....+...     ...|+.|....+.|.+.+.+.++ +|||.+||+|.++..+.+...              
T Consensus       203 D~lG~~yE~ll~~~a~~~~k~~G~fyTP~~Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~  281 (544)
T 3khk_A          203 DILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQK  281 (544)
T ss_dssp             CSHHHHHHHHHHHHHHTTTCCSTTTCCCHHHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHG
T ss_pred             hHHHHHHHHHHHHHHHhhCccCCeEeCCHHHHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHh
Confidence            4445556654333211     14578999999999998876554 999999999999887754310              


Q ss_pred             -CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-CCCCCccEEEecccccC------------------
Q 020988          190 -YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDAVHAGAALHC------------------  249 (319)
Q Consensus       190 -~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~V~~~~vl~h------------------  249 (319)
                       ...++|+|+++.+++.|+.++.-.+.  ..++.+.++|....+ +.+.+||+|+++--+..                  
T Consensus       282 ~~~~i~G~Eid~~~~~lA~~Nl~l~gi--~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~  359 (544)
T 3khk_A          282 KQISVYGQESNPTTWKLAAMNMVIRGI--DFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINT  359 (544)
T ss_dssp             GGEEEEECCCCHHHHHHHHHHHHHTTC--CCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECC
T ss_pred             hhceEEEEeCCHHHHHHHHHHHHHhCC--CcccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCc
Confidence             34899999999999999988765431  223444778876554 45679999999643331                  


Q ss_pred             -------CCC----HHHHHHHHHHhhcCCCeeEEEEe
Q 020988          250 -------WPS----PSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       250 -------~~d----~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                             ++.    .-..++.+.+.|+++|..++++.
T Consensus       360 ~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP  396 (544)
T 3khk_A          360 NGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLA  396 (544)
T ss_dssp             C--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ccccccccCCCcchhHHHHHHHHHHhccCceEEEEec
Confidence                   111    11567888889999888888876

>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1

Probab=98.35  E-value=1.8e-07  Score=64.52  Aligned_cols=46  Identities=15%  Similarity=0.157  Sum_probs=38.5

Q ss_pred             ccCeeeccCCCccccccCCCCCcccceecCceeeCccCCccccCCceeeeccccC
Q 020988           57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISG  111 (319)
Q Consensus        57 ~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~~~g~~~~~~~~~  111 (319)
                      ..++++||+|+++|.....         .+.+.|+.|+..|++++|++.++.+..
T Consensus         7 LLeiL~CP~ck~~L~~~~~---------~g~LvC~~c~~~YPI~dGIPvmL~~Ea   52 (67)
T 2jny_A            7 LLEVLACPKDKGPLRYLES---------EQLLVNERLNLAYRIDDGIPVLLIDEA   52 (67)
T ss_dssp             GTCCCBCTTTCCBCEEETT---------TTEEEETTTTEEEEEETTEECCCSSCC
T ss_pred             HHHHhCCCCCCCcCeEeCC---------CCEEEcCCCCccccCCCCEeeeChhHh
Confidence            3578999999999877542         367899999999999999999996643

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.35  E-value=1.1e-06  Score=86.79  Aligned_cols=98  Identities=10%  Similarity=0.056  Sum_probs=66.0

Q ss_pred             CCeEEEEcCCcChHHHHHHhh----C---------CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988          167 GGLLVDVSCGSGLFSRKFAKS----G---------TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (319)
Q Consensus       167 ~~~VLDiGcG~G~~~~~l~~~----g---------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (319)
                      +..|||||||+|-++....+.    +         ...+|++||-++.+....+++.. ++  ....|+++.+|++++.+
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng--~~d~VtVI~gd~eev~l  486 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RT--WKRRVTIIESDMRSLPG  486 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HT--TTTCSEEEESCGGGHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cC--CCCeEEEEeCchhhccc
Confidence            458999999999996433222    2         23489999999987766665544 22  45679999999999866


Q ss_pred             C-----CCCccEEEecccccCCCCH---HHHHHHHHHhhcCCC
Q 020988          234 A-----SGFVDAVHAGAALHCWPSP---SNAASVFSSSYSLLS  268 (319)
Q Consensus       234 ~-----~~~fD~V~~~~vl~h~~d~---~~~l~el~rvlk~g~  268 (319)
                      +     .+++|+|++-.. ..+-+-   ...+.-+.+.|||+|
T Consensus       487 p~~~~~~ekVDIIVSElm-Gsfl~nEL~pe~Ld~v~r~Lkp~G  528 (745)
T 3ua3_A          487 IAKDRGFEQPDIIVSELL-GSFGDNELSPECLDGVTGFLKPTT  528 (745)
T ss_dssp             HHHHTTCCCCSEEEECCC-BTTBGGGSHHHHHHTTGGGSCTTC
T ss_pred             ccccCCCCcccEEEEecc-ccccchhccHHHHHHHHHhCCCCc
Confidence            3     478999998432 112111   245555667777764

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.33  E-value=2.7e-06  Score=74.99  Aligned_cols=109  Identities=12%  Similarity=0.068  Sum_probs=71.9

Q ss_pred             hhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEE
Q 020988          162 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV  241 (319)
Q Consensus       162 l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V  241 (319)
                      ....++.+|||+|||+|.|+..+++..+...++|+|++.++....... ..    ...++..+..+++...+..++||+|
T Consensus        70 ~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~-~~----~g~~ii~~~~~~dv~~l~~~~~DlV  144 (277)
T 3evf_A           70 GYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV-QS----LGWNIITFKDKTDIHRLEPVKCDTL  144 (277)
T ss_dssp             TSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC-CB----TTGGGEEEECSCCTTTSCCCCCSEE
T ss_pred             CCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc-Cc----CCCCeEEEeccceehhcCCCCccEE
Confidence            344678899999999999999888764444788888875431000000 00    0115556677766566777899999


Q ss_pred             EecccccCCCCHH-------HHHHHHHHhhcCC-CeeEEEEee
Q 020988          242 HAGAALHCWPSPS-------NAASVFSSSYSLL-SICYLLQFR  276 (319)
Q Consensus       242 ~~~~vl~h~~d~~-------~~l~el~rvlk~g-~~~g~~~~~  276 (319)
                      ++..+.+ .....       .+++.+.++|+|+ |.+-.-+|.
T Consensus       145 lsD~apn-sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~  186 (277)
T 3evf_A          145 LCDIGES-SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA  186 (277)
T ss_dssp             EECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred             EecCccC-cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence            9977655 33321       2346678899999 877776776

>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}

Probab=98.33  E-value=2.1e-07  Score=64.43  Aligned_cols=45  Identities=18%  Similarity=0.215  Sum_probs=37.9

Q ss_pred             ccCeeeccCCCccccccCCCCCcccceecCceeeCccCCccccCCceeeecccc
Q 020988           57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVIS  110 (319)
Q Consensus        57 ~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~~~g~~~~~~~~  110 (319)
                      ..++++||+|+++|.....         .+.+.|++||..|++++|+..++.+.
T Consensus         5 LL~iL~CP~ck~~L~~~~~---------~~~LiC~~cg~~YPI~dGIPvmL~~E   49 (68)
T 2jr6_A            5 FLDILVCPVTKGRLEYHQD---------KQELWSRQAKLAYPIKDGIPYMLENE   49 (68)
T ss_dssp             SSCCCBCSSSCCBCEEETT---------TTEEEETTTTEEEEEETTEECCCTTT
T ss_pred             HhhheECCCCCCcCeEeCC---------CCEEEcCCCCcEecCCCCeeeeChhh
Confidence            3578999999999876542         36789999999999999999998653

>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1

Probab=98.32  E-value=2e-07  Score=64.48  Aligned_cols=44  Identities=18%  Similarity=0.443  Sum_probs=37.5

Q ss_pred             cCeeeccCCCccccccCCCCCcccceecCceeeCccCCccccCCceeeecccc
Q 020988           58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVIS  110 (319)
Q Consensus        58 ~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~~~g~~~~~~~~  110 (319)
                      .++++||+|+++|.....         .+.+.|++||..|++++|+..++.+.
T Consensus         6 L~iL~CP~ck~~L~~~~~---------~~~LiC~~cg~~YPI~dGIPvmL~~E   49 (68)
T 2hf1_A            6 LEILVCPLCKGPLVFDKS---------KDELICKGDRLAFPIKDGIPMMLESE   49 (68)
T ss_dssp             EEECBCTTTCCBCEEETT---------TTEEEETTTTEEEEEETTEECCCGGG
T ss_pred             hhheECCCCCCcCeEeCC---------CCEEEcCCCCcEecCCCCeeeeChhh
Confidence            478999999999876542         36789999999999999999999653

>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}

Probab=98.31  E-value=2.4e-07  Score=64.48  Aligned_cols=46  Identities=15%  Similarity=0.314  Sum_probs=38.5

Q ss_pred             ccCeeeccCCCccccccCCCCCcccceecCceeeCccCCccccCCceeeeccccC
Q 020988           57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISG  111 (319)
Q Consensus        57 ~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~~~g~~~~~~~~~  111 (319)
                      ..++++||+|+++|.....         .+.+.|++||..|++++|+..++.+..
T Consensus         5 LL~iL~CP~ck~~L~~~~~---------~~~LiC~~cg~~YPI~dGIPvmL~~Ea   50 (70)
T 2js4_A            5 LLDILVCPVCKGRLEFQRA---------QAELVCNADRLAFPVRDGVPIMLEAEA   50 (70)
T ss_dssp             CCCCCBCTTTCCBEEEETT---------TTEEEETTTTEEEEEETTEECCCGGGS
T ss_pred             HhhheECCCCCCcCEEeCC---------CCEEEcCCCCceecCCCCeeeeChhhc
Confidence            3578999999999876542         367899999999999999999997643

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.31  E-value=6.1e-06  Score=73.94  Aligned_cols=109  Identities=10%  Similarity=0.128  Sum_probs=82.1

Q ss_pred             ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhc--CccCCCCeEEEEcCCCCC-CCCCCCccE
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD--NTILTSNLALVRADVCRL-PFASGFVDA  240 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~--~~~~~~~i~~~~~d~~~l-p~~~~~fD~  240 (319)
                      ...+.+||-||.|.|..++.+.+..+..+|+.+|+++.+++.+++.+...  +....++++++.+|.... .-..++||+
T Consensus        81 ~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDv  160 (294)
T 3o4f_A           81 HGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDV  160 (294)
T ss_dssp             SSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEE
T ss_pred             CCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCE
Confidence            34578999999999999999998866679999999999999999987542  122357999999998764 345678999


Q ss_pred             EEeccc-----ccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988          241 VHAGAA-----LHCWPSPSNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       241 V~~~~v-----l~h~~d~~~~l~el~rvlk~g~~~g~~  273 (319)
                      |+.-..     -.++.. ..+++.+++.|+|+|.....
T Consensus       161 Ii~D~~dp~~~~~~L~t-~eFy~~~~~~L~p~Gv~v~q  197 (294)
T 3o4f_A          161 IISDCTDPIGPGESLFT-SAFYEGCKRCLNPGGIFVAQ  197 (294)
T ss_dssp             EEESCCCCCCTTCCSSC-CHHHHHHHHTEEEEEEEEEE
T ss_pred             EEEeCCCcCCCchhhcC-HHHHHHHHHHhCCCCEEEEe
Confidence            997421     122212 35678888888887765544

>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1

Probab=98.30  E-value=2.7e-07  Score=64.09  Aligned_cols=44  Identities=20%  Similarity=0.421  Sum_probs=37.4

Q ss_pred             cCeeeccCCCccccccCCCCCcccceecCceeeCccCCccccCCceeeecccc
Q 020988           58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVIS  110 (319)
Q Consensus        58 ~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~~~g~~~~~~~~  110 (319)
                      .++++||+|+++|.....         .+.+.|++||..|++.+|+..++.+.
T Consensus         6 LeiL~CP~ck~~L~~~~~---------~~~LiC~~cg~~YPI~dGIPvmL~~e   49 (69)
T 2pk7_A            6 LDILACPICKGPLKLSAD---------KTELISKGAGLAYPIRDGIPVMLESE   49 (69)
T ss_dssp             GGTCCCTTTCCCCEECTT---------SSEEEETTTTEEEEEETTEECCCGGG
T ss_pred             HhheeCCCCCCcCeEeCC---------CCEEEcCCCCcEecCcCCeeeeChhh
Confidence            578999999999876542         36789999999999999999998653

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.24  E-value=5.5e-06  Score=76.32  Aligned_cols=92  Identities=15%  Similarity=0.111  Sum_probs=71.9

Q ss_pred             ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (319)
                      ..+|.++||+||++|.|+..+.+.+.  .|++||+.+ |-...    .     ..+++.++++|+.........||+|+|
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~rg~--~V~aVD~~~-l~~~l----~-----~~~~V~~~~~d~~~~~~~~~~~D~vvs  276 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKRNM--WVYSVDNGP-MAQSL----M-----DTGQVTWLREDGFKFRPTRSNISWMVC  276 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHTTC--EEEEECSSC-CCHHH----H-----TTTCEEEECSCTTTCCCCSSCEEEEEE
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHCCC--EEEEEEhhh-cChhh----c-----cCCCeEEEeCccccccCCCCCcCEEEE
Confidence            45799999999999999999999876  999999864 22111    1     146899999999888777789999999


Q ss_pred             cccccCCCCHHHHHHHHHHhhcCCCeeE
Q 020988          244 GAALHCWPSPSNAASVFSSSYSLLSICY  271 (319)
Q Consensus       244 ~~vl~h~~d~~~~l~el~rvlk~g~~~g  271 (319)
                      -.+    .+|....+.+.+.+..+...+
T Consensus       277 Dm~----~~p~~~~~l~~~wl~~~~~~~  300 (375)
T 4auk_A          277 DMV----EKPAKVAALMAQWLVNGWCRE  300 (375)
T ss_dssp             CCS----SCHHHHHHHHHHHHHTTSCSE
T ss_pred             cCC----CChHHhHHHHHHHHhccccce
Confidence            543    467787888888777775443

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.24  E-value=2.3e-05  Score=66.49  Aligned_cols=108  Identities=12%  Similarity=0.099  Sum_probs=71.9

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC----
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----  231 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l----  231 (319)
                      +.+...+  .+..+|||||||  +-+..+++. +..+|+.+|.+++..+.|+++++..+.....+++++.+|+.+.    
T Consensus        22 ~~L~~~l--~~a~~VLEiGtG--ySTl~lA~~-~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg   96 (202)
T 3cvo_A           22 EALRMAY--EEAEVILEYGSG--GSTVVAAEL-PGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWG   96 (202)
T ss_dssp             HHHHHHH--HHCSEEEEESCS--HHHHHHHTS-TTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGG
T ss_pred             HHHHHHh--hCCCEEEEECch--HHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhccc
Confidence            4444433  346899999985  566666664 2469999999999999999999875311145899999997542    


Q ss_pred             -----------C--------C-CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988          232 -----------P--------F-ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFR  276 (319)
Q Consensus       232 -----------p--------~-~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~  276 (319)
                                 +        . ..++||+|+.-.-.     ....+....+.+++   +|++++.
T Consensus        97 ~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k-----~~~~~~~~l~~l~~---GG~Iv~D  153 (202)
T 3cvo_A           97 HPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRF-----RVGCALATAFSITR---PVTLLFD  153 (202)
T ss_dssp             CBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSSS-----HHHHHHHHHHHCSS---CEEEEET
T ss_pred             ccccchhhhhHHHHhhhhhccccCCCCCEEEEeCCC-----chhHHHHHHHhcCC---CeEEEEe
Confidence                       1        1 23789999986531     22444444455555   4555553

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.23  E-value=1.1e-05  Score=81.06  Aligned_cols=131  Identities=13%  Similarity=0.026  Sum_probs=87.5

Q ss_pred             CCCCCcHHHHHHHHHH----hhc--cCCCeEEEEcCCcChHHHHHHhhCC---CCeEEEEeCCHHHHHHH--HHHHhhcC
Q 020988          146 SGFPGPDEEFKMAQEY----FKS--AQGGLLVDVSCGSGLFSRKFAKSGT---YSGVVALDFSENMLRQC--YDFIKQDN  214 (319)
Q Consensus       146 ~~~~~~~~~~~~l~~~----l~~--~~~~~VLDiGcG~G~~~~~l~~~g~---~~~v~gvD~s~~~l~~a--~~~~~~~~  214 (319)
                      ..++.|....+.+...    +..  .++.+|||.|||+|.++..+++...   ..+++|+|+++.+++.|  +.++..++
T Consensus       295 GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~  374 (878)
T 3s1s_A          295 GVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQ  374 (878)
T ss_dssp             BSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTT
T ss_pred             ceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhh
Confidence            4577888887777766    222  2578999999999999999887653   35799999999999999  44332210


Q ss_pred             c-cCCCCeEEEEcCCCCC-CCCCCCccEEEecccccC-CCC----------------------------HHHHHHHHHHh
Q 020988          215 T-ILTSNLALVRADVCRL-PFASGFVDAVHAGAALHC-WPS----------------------------PSNAASVFSSS  263 (319)
Q Consensus       215 ~-~~~~~i~~~~~d~~~l-p~~~~~fD~V~~~~vl~h-~~d----------------------------~~~~l~el~rv  263 (319)
                      . .......+...|+... +.....||+|+++--+.. ...                            ...+++.+.+.
T Consensus       375 LlhGi~~~~I~~dD~L~~~~~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~l  454 (878)
T 3s1s_A          375 LVSSNNAPTITGEDVCSLNPEDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTEL  454 (878)
T ss_dssp             TCBTTBCCEEECCCGGGCCGGGGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHH
T ss_pred             hhcCCCcceEEecchhcccccccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHh
Confidence            0 0111234555555543 234578999999754411 111                            12346678889


Q ss_pred             hcCCCeeEEEEee
Q 020988          264 YSLLSICYLLQFR  276 (319)
Q Consensus       264 lk~g~~~g~~~~~  276 (319)
                      |+++|..++++..
T Consensus       455 LKpGGrLAfIlP~  467 (878)
T 3s1s_A          455 VQDGTVISAIMPK  467 (878)
T ss_dssp             SCTTCEEEEEEET
T ss_pred             cCCCcEEEEEECh
Confidence            9999999988874

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.21  E-value=3.9e-06  Score=74.45  Aligned_cols=80  Identities=21%  Similarity=0.348  Sum_probs=65.9

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC---
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---  232 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---  232 (319)
                      +.+.+.+...+++.+||.+||.|..+..+++.+  .+|+|+|.++.+++.|++ +..      .++.++.+++.+++   
T Consensus        12 ~e~le~L~~~~gg~~VD~T~G~GGHS~~il~~~--g~VigiD~Dp~Ai~~A~~-L~~------~rv~lv~~~f~~l~~~L   82 (285)
T 1wg8_A           12 QEALDLLAVRPGGVYVDATLGGAGHARGILERG--GRVIGLDQDPEAVARAKG-LHL------PGLTVVQGNFRHLKRHL   82 (285)
T ss_dssp             HHHHHHHTCCTTCEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHH-TCC------TTEEEEESCGGGHHHHH
T ss_pred             HHHHHhhCCCCCCEEEEeCCCCcHHHHHHHHCC--CEEEEEeCCHHHHHHHHh-hcc------CCEEEEECCcchHHHHH
Confidence            455566777789999999999999999999983  499999999999999998 643      48999999998864   


Q ss_pred             --CCCCCccEEEec
Q 020988          233 --FASGFVDAVHAG  244 (319)
Q Consensus       233 --~~~~~fD~V~~~  244 (319)
                        ...+++|.|++.
T Consensus        83 ~~~g~~~vDgIL~D   96 (285)
T 1wg8_A           83 AALGVERVDGILAD   96 (285)
T ss_dssp             HHTTCSCEEEEEEE
T ss_pred             HHcCCCCcCEEEeC
Confidence              122579999974

>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}

Probab=98.17  E-value=9e-07  Score=58.85  Aligned_cols=43  Identities=26%  Similarity=0.580  Sum_probs=36.8

Q ss_pred             ccCeeeccCCCccccccCCCCCcccceecCceeeC--ccCCccccCCceeeecccc
Q 020988           57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCR--KCDKTYSSKDNYLDLTVIS  110 (319)
Q Consensus        57 ~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~--~Cg~~f~~~~g~~~~~~~~  110 (319)
                      ..++++||+|+++|....           +.+.|+  .|++.|++++|+..++.++
T Consensus         7 lL~iL~CP~c~~~L~~~~-----------~~L~C~~~~c~~~YPI~dGIPvlL~~e   51 (56)
T 2kpi_A            7 LLEILACPACHAPLEERD-----------AELICTGQDCGLAYPVRDGIPVLLVDE   51 (56)
T ss_dssp             CTTSCCCSSSCSCEEEET-----------TEEEECSSSCCCEEEEETTEECCCTTT
T ss_pred             HHhheeCCCCCCcceecC-----------CEEEcCCcCCCcEEeeECCEeeeCHHH
Confidence            357899999999987654           668999  9999999999999998543

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=98.13  E-value=8.5e-06  Score=75.65  Aligned_cols=109  Identities=17%  Similarity=0.123  Sum_probs=71.3

Q ss_pred             CCeEEEEcCCcChHHHHHH--------hhC-------CCCeEEEEeCCHHHHHHHHHHHhhcCcc---------C--CCC
Q 020988          167 GGLLVDVSCGSGLFSRKFA--------KSG-------TYSGVVALDFSENMLRQCYDFIKQDNTI---------L--TSN  220 (319)
Q Consensus       167 ~~~VLDiGcG~G~~~~~l~--------~~g-------~~~~v~gvD~s~~~l~~a~~~~~~~~~~---------~--~~~  220 (319)
                      +.+|+|+|||+|.++..+.        +..       +..+|+.-|+..+.....=+.+......         .  .+.
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            5789999999999888772        121       5568899998777655544444321000         0  001


Q ss_pred             -eEEEEcCCCCCCCCCCCccEEEecccccCCCCH--------------------------------------HHHHHHHH
Q 020988          221 -LALVRADVCRLPFASGFVDAVHAGAALHCWPSP--------------------------------------SNAASVFS  261 (319)
Q Consensus       221 -i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~--------------------------------------~~~l~el~  261 (319)
                       +.-+.+.+..-.+++++||+|+++.+|||+.+.                                      ..+++...
T Consensus       133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra  212 (374)
T 3b5i_A          133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA  212 (374)
T ss_dssp             EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence             222334555556789999999999999998732                                      23466668


Q ss_pred             HhhcCCCeeEEEEe
Q 020988          262 SSYSLLSICYLLQF  275 (319)
Q Consensus       262 rvlk~g~~~g~~~~  275 (319)
                      +.|+|||...+.+.
T Consensus       213 ~eL~pGG~mvl~~~  226 (374)
T 3b5i_A          213 AEVKRGGAMFLVCL  226 (374)
T ss_dssp             HHEEEEEEEEEEEE
T ss_pred             HHhCCCCEEEEEEe
Confidence            88888777666555

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.10  E-value=1e-06  Score=77.79  Aligned_cols=108  Identities=15%  Similarity=0.050  Sum_probs=68.7

Q ss_pred             hccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEE
Q 020988          163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH  242 (319)
Q Consensus       163 ~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~  242 (319)
                      ...++.+|||+|||.|.|+..+++..+-..|+|+|++.++...+... ..    ...++..+..++....+..+++|+|+
T Consensus        87 ~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~~----~g~~ii~~~~~~dv~~l~~~~~DvVL  161 (282)
T 3gcz_A           87 YVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-TT----LGWNLIRFKDKTDVFNMEVIPGDTLL  161 (282)
T ss_dssp             SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CB----TTGGGEEEECSCCGGGSCCCCCSEEE
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-cc----CCCceEEeeCCcchhhcCCCCcCEEE
Confidence            45678899999999999999888765555799999986532211100 00    01233444433333344568999999


Q ss_pred             ecccccCCCCHH-------HHHHHHHHhhcCC--CeeEEEEee
Q 020988          243 AGAALHCWPSPS-------NAASVFSSSYSLL--SICYLLQFR  276 (319)
Q Consensus       243 ~~~vl~h~~d~~-------~~l~el~rvlk~g--~~~g~~~~~  276 (319)
                      |-.+.. .....       .+++-+.++|+|+  |.+-.-+|.
T Consensus       162 SDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~  203 (282)
T 3gcz_A          162 CDIGES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC  203 (282)
T ss_dssp             ECCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred             ecCccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence            987766 44321       2344456788888  776666776

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.09  E-value=9.5e-06  Score=64.66  Aligned_cols=60  Identities=20%  Similarity=0.160  Sum_probs=46.6

Q ss_pred             CCCeEEEEcCCcC-hHHHHHHh-hCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC-CCccEEE
Q 020988          166 QGGLLVDVSCGSG-LFSRKFAK-SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS-GFVDAVH  242 (319)
Q Consensus       166 ~~~~VLDiGcG~G-~~~~~l~~-~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~-~~fD~V~  242 (319)
                      ++++|||||||+| ..+..+++ .+.  .|+++|+++..+                  .+++.|+.+..... +.||+|+
T Consensus        35 ~~~rVlEVG~G~g~~vA~~La~~~g~--~V~atDInp~Av------------------~~v~dDiF~P~~~~Y~~~DLIY   94 (153)
T 2k4m_A           35 PGTRVVEVGAGRFLYVSDYIRKHSKV--DLVLTDIKPSHG------------------GIVRDDITSPRMEIYRGAALIY   94 (153)
T ss_dssp             SSSEEEEETCTTCCHHHHHHHHHSCC--EEEEECSSCSST------------------TEECCCSSSCCHHHHTTEEEEE
T ss_pred             CCCcEEEEccCCChHHHHHHHHhCCC--eEEEEECCcccc------------------ceEEccCCCCcccccCCcCEEE
Confidence            4689999999999 59999987 665  899999998643                  27888988733211 4899998


Q ss_pred             ecc
Q 020988          243 AGA  245 (319)
Q Consensus       243 ~~~  245 (319)
                      +..
T Consensus        95 sir   97 (153)
T 2k4m_A           95 SIR   97 (153)
T ss_dssp             EES
T ss_pred             EcC
Confidence            854

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.01  E-value=6.3e-06  Score=72.73  Aligned_cols=107  Identities=13%  Similarity=-0.038  Sum_probs=69.2

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhh-------CCC-----CeEEEEeCCH---HHHH-----------HHHHHHhhcC----
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKS-------GTY-----SGVVALDFSE---NMLR-----------QCYDFIKQDN----  214 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~-------g~~-----~~v~gvD~s~---~~l~-----------~a~~~~~~~~----  214 (319)
                      .++.+|||||+|+|..+..+.+.       .+.     .+++++|..+   +.++           .+++.+....    
T Consensus        59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~  138 (257)
T 2qy6_A           59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP  138 (257)
T ss_dssp             SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence            45679999999999988776553       442     4899999876   4444           5555544310    


Q ss_pred             ------c-cCCCCeEEEEcCCCC-CCCCC----CCccEEEecc-cccCCCC--HHHHHHHHHHhhcCCCeeE
Q 020988          215 ------T-ILTSNLALVRADVCR-LPFAS----GFVDAVHAGA-ALHCWPS--PSNAASVFSSSYSLLSICY  271 (319)
Q Consensus       215 ------~-~~~~~i~~~~~d~~~-lp~~~----~~fD~V~~~~-vl~h~~d--~~~~l~el~rvlk~g~~~g  271 (319)
                            . ....+++++.+|+.+ ++..+    ..||+|+.-. +-...++  ...+++++.++++|+|.+.
T Consensus       139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~  210 (257)
T 2qy6_A          139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLA  210 (257)
T ss_dssp             EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEE
T ss_pred             chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEE
Confidence                  0 012467889999876 44322    2799999843 2222222  2467889999988876544

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=98.01  E-value=1.8e-05  Score=71.21  Aligned_cols=60  Identities=15%  Similarity=0.197  Sum_probs=50.5

Q ss_pred             cHHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhc
Q 020988          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD  213 (319)
Q Consensus       151 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~  213 (319)
                      |....+.+..... .++..|||++||+|..+..+.+.+.  +++|+|+++.+++.|++++...
T Consensus       221 p~~l~~~~i~~~~-~~~~~vlD~f~GsGt~~~~a~~~g~--~~~g~e~~~~~~~~a~~r~~~~  280 (297)
T 2zig_A          221 PLELAERLVRMFS-FVGDVVLDPFAGTGTTLIAAARWGR--RALGVELVPRYAQLAKERFARE  280 (297)
T ss_dssp             CHHHHHHHHHHHC-CTTCEEEETTCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHh
Confidence            4455566666554 6789999999999999999999876  9999999999999999998763

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=98.00  E-value=8.6e-05  Score=72.21  Aligned_cols=144  Identities=13%  Similarity=0.068  Sum_probs=99.5

Q ss_pred             chhhHHhHHhHHHhhh----hCCCCCcHHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhC-------------CCC
Q 020988          129 PFVSFLYERGWRQNFN----RSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-------------TYS  191 (319)
Q Consensus       129 ~~~s~~~~~~w~~~~~----~~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g-------------~~~  191 (319)
                      +.+...|+...++.-.    .+.|+.|....+.+.+.+.+.++.+|+|-+||+|.|+..+.+..             ...
T Consensus       176 d~lG~~yE~ll~~~~~~~g~~GqfyTP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~  255 (530)
T 3ufb_A          176 HTLSRLYETMLREMRDAAGDSGEFYTPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQES  255 (530)
T ss_dssp             HHHHHHHHHHHHHHTTSSSSCCCCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHhcCcCceECCcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhh
Confidence            3455566655443221    13589999999999999988889999999999999987765431             123


Q ss_pred             eEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC----CCCCccEEEecccccCCC---------------C
Q 020988          192 GVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF----ASGFVDAVHAGAALHCWP---------------S  252 (319)
Q Consensus       192 ~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~----~~~~fD~V~~~~vl~h~~---------------d  252 (319)
                      .++|+|+++.+...|+-++--.+   .....+..+|....|.    ....||+|+++--+.--.               +
T Consensus       256 ~i~G~E~~~~~~~la~mNl~lhg---~~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~  332 (530)
T 3ufb_A          256 SIFGGEAKSLPYLLVQMNLLLHG---LEYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAE  332 (530)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHHT---CSCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCB
T ss_pred             hhhhhhccHHHHHHHHHHHHhcC---CccccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccch
Confidence            69999999999999987664432   2334567788766543    235799999976442111               1


Q ss_pred             H-HHHHHHHHHhhc-------CCCeeEEEEe
Q 020988          253 P-SNAASVFSSSYS-------LLSICYLLQF  275 (319)
Q Consensus       253 ~-~~~l~el~rvlk-------~g~~~g~~~~  275 (319)
                      . ...++.+.+.||       ++|..++++.
T Consensus       333 ~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP  363 (530)
T 3ufb_A          333 TAMLFLQLIMRKLKRPGHGSDNGGRAAVVVP  363 (530)
T ss_dssp             HHHHHHHHHHHHBCCTTSSSSSCCEEEEEEE
T ss_pred             hHHHHHHHHHHHhhhhhhccCCCceEEEEec
Confidence            1 134566667776       6888888887

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=97.96  E-value=1.7e-05  Score=73.73  Aligned_cols=82  Identities=15%  Similarity=0.080  Sum_probs=56.4

Q ss_pred             CCeEEEEcCCcChHHHHHHhh-----------------CCCCeEEEEeCC-----------HHHHHHHHHHHhhcCccCC
Q 020988          167 GGLLVDVSCGSGLFSRKFAKS-----------------GTYSGVVALDFS-----------ENMLRQCYDFIKQDNTILT  218 (319)
Q Consensus       167 ~~~VLDiGcG~G~~~~~l~~~-----------------g~~~~v~gvD~s-----------~~~l~~a~~~~~~~~~~~~  218 (319)
                      ..+|+|+||++|.++..+...                 .|..+|+.-|+.           +.+.+..++....     .
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~-----~  127 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGR-----K  127 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCC-----C
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccC-----C
Confidence            578999999999998877665                 245678899987           4444443332110     1


Q ss_pred             CCeEEEEcC---CCCCCCCCCCccEEEecccccCCCCH
Q 020988          219 SNLALVRAD---VCRLPFASGFVDAVHAGAALHCWPSP  253 (319)
Q Consensus       219 ~~i~~~~~d---~~~lp~~~~~fD~V~~~~vl~h~~d~  253 (319)
                      .+.-|+.+.   +..-.|+++++|+|+++.+|||+.+.
T Consensus       128 ~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~  165 (384)
T 2efj_A          128 IGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQV  165 (384)
T ss_dssp             TTSEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSS
T ss_pred             CCceEEEecchhhhhccCCCCceEEEEecceeeecCCC
Confidence            123455554   34456889999999999999998754

>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}

Probab=97.96  E-value=3.1e-06  Score=62.45  Aligned_cols=54  Identities=15%  Similarity=0.104  Sum_probs=40.7

Q ss_pred             ccCeeeccCCCccccccCC------------------CCCcccceecCceeeCccCCccccCCceeeecccc
Q 020988           57 EGDLFSCPICYEPLIRKGP------------------TGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVIS  110 (319)
Q Consensus        57 ~~~~l~CP~C~~~l~~~~~------------------~~~~~~~i~~~~~~C~~Cg~~f~~~~g~~~~~~~~  110 (319)
                      ..++|+||+|.++|.....                  .+...+.+..+.+.|+.|++.|++++|++.++...
T Consensus         5 LLdILaCP~cK~pL~l~~~~~~~~~~ca~~~~~~~~~~~~~~~e~~~~~LvC~~c~~~YPI~dGIPvmL~~e   76 (97)
T 2k5r_A            5 LLHLLCSPDTRQPLSLLESKGLEALNKAIVSGTVQRADGSIQNQSLHEALITRDRKQVFRIEDSIPVLLPEE   76 (97)
T ss_dssp             TCSSCCCCTTSSCCEECCHHHHHHHHHHHHHTCCBCTTSCBCCCCCSEEEECTTSCEEEEEETTEEECCGGG
T ss_pred             HhhheECCCCCCcccccccchhhhhhhhhhccccccccccccccccCCeEEcCCCCCCccccCCCcccChHH
Confidence            3578999999998865432                  11223344567899999999999999999999653

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.82  E-value=9.6e-05  Score=65.47  Aligned_cols=110  Identities=11%  Similarity=0.027  Sum_probs=72.6

Q ss_pred             hhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEc-CCCCCCCCCCCccE
Q 020988          162 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DVCRLPFASGFVDA  240 (319)
Q Consensus       162 l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~-d~~~lp~~~~~fD~  240 (319)
                      ....+++.|||+||++|.|+..++....-..|+|+|+-..-.+.= ....+.   ....+.+..+ |+..++.  .++|+
T Consensus        90 ~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P-~~~~ql---~w~lV~~~~~~Dv~~l~~--~~~D~  163 (321)
T 3lkz_A           90 RFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEP-QLVQSY---GWNIVTMKSGVDVFYRPS--ECCDT  163 (321)
T ss_dssp             TSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCC-CCCCBT---TGGGEEEECSCCTTSSCC--CCCSE
T ss_pred             cCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCc-chhhhc---CCcceEEEeccCHhhCCC--CCCCE
Confidence            445688899999999999999777764445799999965411000 000011   1234788887 8877764  67999


Q ss_pred             EEecccccCCCCHH----H---HHHHHHHhhcCC-CeeEEEEeecc
Q 020988          241 VHAGAALHCWPSPS----N---AASVFSSSYSLL-SICYLLQFRYT  278 (319)
Q Consensus       241 V~~~~vl~h~~d~~----~---~l~el~rvlk~g-~~~g~~~~~~~  278 (319)
                      |+|--. +--+++.    +   +|+-+.+.|+++ +.+.+-+|.+|
T Consensus       164 ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY  208 (321)
T 3lkz_A          164 LLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPY  208 (321)
T ss_dssp             EEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTT
T ss_pred             EEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCC
Confidence            999766 7777764    2   344445677777 66666677663

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=97.80  E-value=5.3e-05  Score=69.92  Aligned_cols=87  Identities=11%  Similarity=0.119  Sum_probs=69.6

Q ss_pred             HHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCcc---CCCCeEEEEcCCCCCC-
Q 020988          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI---LTSNLALVRADVCRLP-  232 (319)
Q Consensus       157 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~---~~~~i~~~~~d~~~lp-  232 (319)
                      .....+...++.+|||+.+|.|.-+.++++.+....++++|+++.-++..+++++..+..   ...++.+...|...++ 
T Consensus       139 l~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~  218 (359)
T 4fzv_A          139 LPVLALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGE  218 (359)
T ss_dssp             HHHHHHCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHH
T ss_pred             HHHHHhCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcch
Confidence            444567788999999999999999999998877678999999999999999888764321   2257888888887764 


Q ss_pred             CCCCCccEEEe
Q 020988          233 FASGFVDAVHA  243 (319)
Q Consensus       233 ~~~~~fD~V~~  243 (319)
                      ...+.||.|++
T Consensus       219 ~~~~~fD~VLl  229 (359)
T 4fzv_A          219 LEGDTYDRVLV  229 (359)
T ss_dssp             HSTTCEEEEEE
T ss_pred             hccccCCEEEE
Confidence            34578999996

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=97.71  E-value=0.00037  Score=62.09  Aligned_cols=109  Identities=11%  Similarity=0.009  Sum_probs=76.6

Q ss_pred             hccCCCeEEEEcCCcChHHHHHHhhC-----CCCeEEEEeCCHH--------------------------HHHHHHHHHh
Q 020988          163 KSAQGGLLVDVSCGSGLFSRKFAKSG-----TYSGVVALDFSEN--------------------------MLRQCYDFIK  211 (319)
Q Consensus       163 ~~~~~~~VLDiGcG~G~~~~~l~~~g-----~~~~v~gvD~s~~--------------------------~l~~a~~~~~  211 (319)
                      ....++.|||+|+..|..+..++...     +..+++++|..+.                          .++.++++++
T Consensus       103 ~~~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~  182 (282)
T 2wk1_A          103 GNNVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFR  182 (282)
T ss_dssp             HTTCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHH
T ss_pred             hcCCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHH
Confidence            34567899999999999887776542     3568999996421                          3566888887


Q ss_pred             hcCccC-CCCeEEEEcCCCC-CC-CCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEeecc
Q 020988          212 QDNTIL-TSNLALVRADVCR-LP-FASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFRYT  278 (319)
Q Consensus       212 ~~~~~~-~~~i~~~~~d~~~-lp-~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~~~  278 (319)
                      +.+  . ..+++++.+|+.+ +| +++++||+|++-.-.     -+.....+..++..+.++|++++-.+
T Consensus       183 ~~g--l~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~-----y~~~~~~Le~~~p~L~pGGiIv~DD~  245 (282)
T 2wk1_A          183 NYD--LLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL-----YESTWDTLTNLYPKVSVGGYVIVDDY  245 (282)
T ss_dssp             HTT--CCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS-----HHHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred             HcC--CCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc-----cccHHHHHHHHHhhcCCCEEEEEcCC
Confidence            653  2 2689999999855 44 345789999986421     13344556666777788888888554

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.68  E-value=0.00028  Score=60.62  Aligned_cols=110  Identities=16%  Similarity=0.094  Sum_probs=70.8

Q ss_pred             hhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEc-CCCCCCCCCCCccE
Q 020988          162 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DVCRLPFASGFVDA  240 (319)
Q Consensus       162 l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~-d~~~lp~~~~~fD~  240 (319)
                      ....++++|||+||++|.|+..++......+|+|+|+-..-.+.    -.-........++|.++ |+..++-  .++|+
T Consensus        74 ~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~----P~~~~s~gwn~v~fk~gvDv~~~~~--~~~Dt  147 (267)
T 3p8z_A           74 NMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEE----PVPMSTYGWNIVKLMSGKDVFYLPP--EKCDT  147 (267)
T ss_dssp             TSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC----CCCCCCTTTTSEEEECSCCGGGCCC--CCCSE
T ss_pred             cCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccC----cchhhhcCcCceEEEeccceeecCC--ccccE
Confidence            34568889999999999999978777544589999996532100    00000112467999999 9876653  67999


Q ss_pred             EEecccccCCCCHH----H---HHHHHHHhhcCCCeeEEEEeeccc
Q 020988          241 VHAGAALHCWPSPS----N---AASVFSSSYSLLSICYLLQFRYTK  279 (319)
Q Consensus       241 V~~~~vl~h~~d~~----~---~l~el~rvlk~g~~~g~~~~~~~~  279 (319)
                      |+|--.= --+++.    +   +++-+.+.|++ +.+.+-+|.++.
T Consensus       148 llcDIge-Ss~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~  191 (267)
T 3p8z_A          148 LLCDIGE-SSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYM  191 (267)
T ss_dssp             EEECCCC-CCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCS
T ss_pred             EEEecCC-CCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCC
Confidence            9996543 344443    2   22333445566 566666776665

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=97.68  E-value=4e-05  Score=68.08  Aligned_cols=107  Identities=12%  Similarity=0.097  Sum_probs=65.4

Q ss_pred             ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (319)
                      ..++.+|||+||++|.|+..+++...-..|+|+|+...+...... ...    ...++.....++.-..+..+.+|+|++
T Consensus        79 ~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~----~~~~iv~~~~~~di~~l~~~~~DlVls  153 (300)
T 3eld_A           79 LRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQT----LGWNIVKFKDKSNVFTMPTEPSDTLLC  153 (300)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCB----TTGGGEEEECSCCTTTSCCCCCSEEEE
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-ccc----cCCceEEeecCceeeecCCCCcCEEee
Confidence            357889999999999999999986444578999997542100000 000    011233333333223344678999999


Q ss_pred             cccccCCCCH-------HHHHHHHHHhhcCC-CeeEEEEee
Q 020988          244 GAALHCWPSP-------SNAASVFSSSYSLL-SICYLLQFR  276 (319)
Q Consensus       244 ~~vl~h~~d~-------~~~l~el~rvlk~g-~~~g~~~~~  276 (319)
                      ..+.. ...+       ..++.-+.++|+++ |.+-.-+|.
T Consensus       154 D~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~  193 (300)
T 3eld_A          154 DIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA  193 (300)
T ss_dssp             CCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred             cCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence            76655 4433       12344556788998 776666666

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=97.65  E-value=3.1e-05  Score=71.44  Aligned_cols=108  Identities=10%  Similarity=0.062  Sum_probs=76.9

Q ss_pred             CCCeEEEEcCCcChHHHHHHhh----------------CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEE---c
Q 020988          166 QGGLLVDVSCGSGLFSRKFAKS----------------GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR---A  226 (319)
Q Consensus       166 ~~~~VLDiGcG~G~~~~~l~~~----------------g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~---~  226 (319)
                      ...+|+|+||++|.++..+...                .|..+|+.-|+..+.....-+.+....  ...+..|+.   +
T Consensus        51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~--~~~~~~f~~gvpg  128 (359)
T 1m6e_X           51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN--DVDGVCFINGVPG  128 (359)
T ss_dssp             SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC--SCTTCEEEEEEES
T ss_pred             CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhc--ccCCCEEEEecch
Confidence            3467999999999877665443                245689999999988888877664311  001223444   4


Q ss_pred             CCCCCCCCCCCccEEEecccccCCCCHH---------------------------------HHHHHHHHhhcCCCeeEEE
Q 020988          227 DVCRLPFASGFVDAVHAGAALHCWPSPS---------------------------------NAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       227 d~~~lp~~~~~fD~V~~~~vl~h~~d~~---------------------------------~~l~el~rvlk~g~~~g~~  273 (319)
                      .+..-.|+++++|+|+++.+|||+.+..                                 .+|+.-.+.|+|||...+.
T Consensus       129 SFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~  208 (359)
T 1m6e_X          129 SFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLT  208 (359)
T ss_dssp             CSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEE
T ss_pred             hhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence            5555678899999999999999986522                                 2266668899999988766


Q ss_pred             Ee
Q 020988          274 QF  275 (319)
Q Consensus       274 ~~  275 (319)
                      +.
T Consensus       209 ~~  210 (359)
T 1m6e_X          209 IL  210 (359)
T ss_dssp             EE
T ss_pred             Ee
Confidence            66

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.47  E-value=0.00015  Score=65.81  Aligned_cols=84  Identities=18%  Similarity=0.253  Sum_probs=65.3

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC--
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--  232 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--  232 (319)
                      +.+.+.+...+++.++|..||.|..+..+++. ++..+|+|+|.++.+++.++ ++.      ..++.++.+++.++.  
T Consensus        47 ~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL~------~~Rv~lv~~nF~~l~~~  119 (347)
T 3tka_A           47 DEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TID------DPRFSIIHGPFSALGEY  119 (347)
T ss_dssp             HHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TCC------CTTEEEEESCGGGHHHH
T ss_pred             HHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hhc------CCcEEEEeCCHHHHHHH
Confidence            45566777788999999999999999999987 56779999999999999984 441      357888988887753  


Q ss_pred             CC----CCCccEEEeccc
Q 020988          233 FA----SGFVDAVHAGAA  246 (319)
Q Consensus       233 ~~----~~~fD~V~~~~v  246 (319)
                      +.    .+++|.|+....
T Consensus       120 L~~~g~~~~vDgILfDLG  137 (347)
T 3tka_A          120 VAERDLIGKIDGILLDLG  137 (347)
T ss_dssp             HHHTTCTTCEEEEEEECS
T ss_pred             HHhcCCCCcccEEEECCc
Confidence            11    136888887543

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.39  E-value=0.00037  Score=60.64  Aligned_cols=105  Identities=17%  Similarity=0.078  Sum_probs=63.2

Q ss_pred             hccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCe---EEEEc-CCCCCCCCCCCc
Q 020988          163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNL---ALVRA-DVCRLPFASGFV  238 (319)
Q Consensus       163 ~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i---~~~~~-d~~~lp~~~~~f  238 (319)
                      -..++++|||+||+.|.|+..+++.-.-..|.|.++..+. .     ..... ....++   .+.++ |+.+++  ..++
T Consensus        70 likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-----~~P~~-~~~~Gv~~i~~~~G~Df~~~~--~~~~  140 (269)
T 2px2_A           70 FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-----EEPML-MQSYGWNIVTMKSGVDVFYKP--SEIS  140 (269)
T ss_dssp             SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-----CCCCC-CCSTTGGGEEEECSCCGGGSC--CCCC
T ss_pred             CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-----cCCCc-ccCCCceEEEeeccCCccCCC--CCCC
Confidence            3568999999999999999999886211133444443320 0     00000 000243   44447 998754  4689


Q ss_pred             cEEEecccccCCCCHH-------HHHHHHHHhhcCCC-eeEEEEeec
Q 020988          239 DAVHAGAALHCWPSPS-------NAASVFSSSYSLLS-ICYLLQFRY  277 (319)
Q Consensus       239 D~V~~~~vl~h~~d~~-------~~l~el~rvlk~g~-~~g~~~~~~  277 (319)
                      |+|+|-.+-. ..++.       .++.-+.++|+++| .+-+-+|..
T Consensus       141 DvVLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg  186 (269)
T 2px2_A          141 DTLLCDIGES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCP  186 (269)
T ss_dssp             SEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCT
T ss_pred             CEEEeCCCCC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCC
Confidence            9999965443 33321       23545567899998 777777764

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.36  E-value=0.00059  Score=60.01  Aligned_cols=59  Identities=19%  Similarity=0.223  Sum_probs=49.4

Q ss_pred             cHHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhh
Q 020988          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ  212 (319)
Q Consensus       151 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~  212 (319)
                      |....+.+.+... .++..|||..||+|..+..+.+.+.  +++|+|+++..++.++++++.
T Consensus       198 p~~l~~~~i~~~~-~~~~~vlD~f~GsGtt~~~a~~~gr--~~ig~e~~~~~~~~~~~r~~~  256 (260)
T 1g60_A          198 PRDLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKLGR--NFIGCDMNAEYVNQANFVLNQ  256 (260)
T ss_dssp             CHHHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHh
Confidence            4445555555543 6789999999999999999999876  999999999999999999865

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=97.33  E-value=0.0004  Score=64.17  Aligned_cols=79  Identities=11%  Similarity=0.133  Sum_probs=60.0

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCc-----cCCCCeEEEEcCCCCC----CCCC
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT-----ILTSNLALVRADVCRL----PFAS  235 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~-----~~~~~i~~~~~d~~~l----p~~~  235 (319)
                      .++.+||=||.|.|..++++.+.. ..+|+.+|+++.+++.+++.+.....     ...++++++.+|....    .-..
T Consensus       204 ~~pkrVLIIGgGdG~~~revlkh~-~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~  282 (381)
T 3c6k_A          204 YTGKDVLILGGGDGGILCEIVKLK-PKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG  282 (381)
T ss_dssp             CTTCEEEEEECTTCHHHHHHHTTC-CSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred             CCCCeEEEECCCcHHHHHHHHhcC-CceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhcc
Confidence            356899999999999999999875 47899999999999999998643110     1124688999987542    1134


Q ss_pred             CCccEEEec
Q 020988          236 GFVDAVHAG  244 (319)
Q Consensus       236 ~~fD~V~~~  244 (319)
                      +.||+|+.-
T Consensus       283 ~~yDvIIvD  291 (381)
T 3c6k_A          283 REFDYVIND  291 (381)
T ss_dssp             CCEEEEEEE
T ss_pred             CceeEEEEC
Confidence            689999974

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.30  E-value=0.00087  Score=61.59  Aligned_cols=71  Identities=13%  Similarity=0.111  Sum_probs=55.7

Q ss_pred             HHHHHHHhhcc------CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCC
Q 020988          155 FKMAQEYFKSA------QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV  228 (319)
Q Consensus       155 ~~~l~~~l~~~------~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~  228 (319)
                      .+.+.+.+...      ++..|||||.|.|.++..+.+.....+|+++|+++.++...++.. .     ..+++++.+|+
T Consensus        41 ~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~-----~~~l~ii~~D~  114 (353)
T 1i4w_A           41 YNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E-----GSPLQILKRDP  114 (353)
T ss_dssp             HHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T-----TSSCEEECSCT
T ss_pred             HHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c-----CCCEEEEECCc
Confidence            34455555443      358999999999999999998732348999999999999998876 2     35899999999


Q ss_pred             CCC
Q 020988          229 CRL  231 (319)
Q Consensus       229 ~~l  231 (319)
                      ..+
T Consensus       115 l~~  117 (353)
T 1i4w_A          115 YDW  117 (353)
T ss_dssp             TCH
T ss_pred             cch
Confidence            654

>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1

Probab=96.92  E-value=0.0006  Score=44.04  Aligned_cols=33  Identities=27%  Similarity=0.518  Sum_probs=25.2

Q ss_pred             ccCeeeccCCCc-cccccCCCCCcccceecCceeeCccCCccc
Q 020988           57 EGDLFSCPICYE-PLIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (319)
Q Consensus        57 ~~~~l~CP~C~~-~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~   98 (319)
                      ....+.||.|++ +|.....         .+.+.|..||..|.
T Consensus         2 ~~~~~~CP~C~~~~l~~d~~---------~gelvC~~CG~v~~   35 (50)
T 1pft_A            2 VNKQKVCPACESAELIYDPE---------RGEIVCAKCGYVIE   35 (50)
T ss_dssp             CSSCCSCTTTSCCCEEEETT---------TTEEEESSSCCBCC
T ss_pred             CCccEeCcCCCCcceEEcCC---------CCeEECcccCCccc
Confidence            456789999999 7755432         36789999999984

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=96.74  E-value=0.00037  Score=78.96  Aligned_cols=102  Identities=17%  Similarity=0.109  Sum_probs=53.2

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCC-----CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-CCCCCCc
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGT-----YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PFASGFV  238 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~-----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~~~~~f  238 (319)
                      .+..+|||||.|+|..+..+.+...     ..+++.+|+|+...+.++++++..      ++..-..|.... ++..++|
T Consensus      1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~------di~~~~~d~~~~~~~~~~~y 1312 (2512)
T 2vz8_A         1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL------HVTQGQWDPANPAPGSLGKA 1312 (2512)
T ss_dssp             SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH------TEEEECCCSSCCCC-----C
T ss_pred             CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc------ccccccccccccccCCCCce
Confidence            3567999999999987665544421     347899999998888888776542      333322344332 3455789


Q ss_pred             cEEEecccccCCCCHHHHHHHHHHhhcCCCeeEE
Q 020988          239 DAVHAGAALHCWPSPSNAASVFSSSYSLLSICYL  272 (319)
Q Consensus       239 D~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~  272 (319)
                      |+|++.+++|-.++....+++++++|||+|..-+
T Consensus      1313 dlvia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~ 1346 (2512)
T 2vz8_A         1313 DLLVCNCALATLGDPAVAVGNMAATLKEGGFLLL 1346 (2512)
T ss_dssp             CEEEEECC--------------------CCEEEE
T ss_pred             eEEEEcccccccccHHHHHHHHHHhcCCCcEEEE
Confidence            9999999999888889999999999999985433

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=96.52  E-value=0.034  Score=50.56  Aligned_cols=106  Identities=11%  Similarity=0.159  Sum_probs=72.0

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCcc------------------C
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI------------------L  217 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~------------------~  217 (319)
                      +.+.+++...+...|+.+|||.......+...++...++-||. |++++.-++.+.+.+..                  .
T Consensus        87 ~~v~~fl~~~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~  165 (334)
T 1rjd_A           87 AAILEFLVANEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLID  165 (334)
T ss_dssp             HHHHHHHHHCSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEE
T ss_pred             HHHHHHHHHCCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccC
Confidence            3444455445668999999999999888887655567888888 77777777776553100                  1


Q ss_pred             CCCeEEEEcCCCCCCC---------CCCCccEEEecccccCCCCHHHHHHHHHHh
Q 020988          218 TSNLALVRADVCRLPF---------ASGFVDAVHAGAALHCWPSPSNAASVFSSS  263 (319)
Q Consensus       218 ~~~i~~~~~d~~~lp~---------~~~~fD~V~~~~vl~h~~d~~~~l~el~rv  263 (319)
                      ..+..++.+|+.+...         ......++++-.++.++ +++...+-+..+
T Consensus       166 ~~~~~~v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL-~~~~~~~ll~~i  219 (334)
T 1rjd_A          166 QGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYM-HNNESQLLINTI  219 (334)
T ss_dssp             CSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGS-CHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCC-CHHHHHHHHHHH
Confidence            3678999999987421         22456788888899998 455443333333

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=96.45  E-value=0.013  Score=52.01  Aligned_cols=105  Identities=7%  Similarity=-0.011  Sum_probs=67.7

Q ss_pred             HHHHHHhhc-----cCCCeEEEEcC------CcChHHHHHHhhCCC-CeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEE
Q 020988          156 KMAQEYFKS-----AQGGLLVDVSC------GSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSNLAL  223 (319)
Q Consensus       156 ~~l~~~l~~-----~~~~~VLDiGc------G~G~~~~~l~~~g~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~  223 (319)
                      ..+.+++..     +.+.+|||+|+      ..|.+  .+++.++. ..|+++|+.+-..              ..+ .+
T Consensus        94 tqlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~s--------------da~-~~  156 (344)
T 3r24_A           94 TQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVS--------------DAD-ST  156 (344)
T ss_dssp             HHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBC--------------SSS-EE
T ss_pred             HHHHHHhccccEeecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCccccc--------------CCC-eE
Confidence            456666632     46899999996      56663  34445664 4899999977310              123 45


Q ss_pred             EEcCCCCCCCCCCCccEEEeccccc---CC--C-----C-HHHHHHHHHHhhcCCCeeEEEEeecc
Q 020988          224 VRADVCRLPFASGFVDAVHAGAALH---CW--P-----S-PSNAASVFSSSYSLLSICYLLQFRYT  278 (319)
Q Consensus       224 ~~~d~~~lp~~~~~fD~V~~~~vl~---h~--~-----d-~~~~l~el~rvlk~g~~~g~~~~~~~  278 (319)
                      +++|...+.. .++||+|++-.+-.   +.  .     . -+.++.-+.++|++||.+-+-+|...
T Consensus       157 IqGD~~~~~~-~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGs  221 (344)
T 3r24_A          157 LIGDCATVHT-ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS  221 (344)
T ss_dssp             EESCGGGEEE-SSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS
T ss_pred             EEcccccccc-CCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCC
Confidence            9999766543 47899999843211   11  1     1 23445556778999988888888443

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=96.09  E-value=0.0093  Score=54.52  Aligned_cols=100  Identities=12%  Similarity=0.044  Sum_probs=69.1

Q ss_pred             CCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC---CCCCccEEE
Q 020988          167 GGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF---ASGFVDAVH  242 (319)
Q Consensus       167 ~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~---~~~~fD~V~  242 (319)
                      ..+|||+-||.|.+...+.+.|. ...|.++|+++.+++..+.++.        +..++.+|+.++..   +...+|+|+
T Consensus         2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~--------~~~~~~~Di~~~~~~~~~~~~~D~l~   73 (343)
T 1g55_A            2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP--------HTQLLAKTIEGITLEEFDRLSFDMIL   73 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT--------TSCEECSCGGGCCHHHHHHHCCSEEE
T ss_pred             CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc--------ccccccCCHHHccHhHcCcCCcCEEE
Confidence            35899999999999999999873 2469999999999999888753        34567888887642   112689999


Q ss_pred             eccccc---------CCCCHH-HHHHHHHHhhcCCC--eeEEEE
Q 020988          243 AGAALH---------CWPSPS-NAASVFSSSYSLLS--ICYLLQ  274 (319)
Q Consensus       243 ~~~vl~---------h~~d~~-~~l~el~rvlk~g~--~~g~~~  274 (319)
                      ...--.         ...|+. .++.++.++++..+  |-.+++
T Consensus        74 ~gpPCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~~~P~~~~~  117 (343)
T 1g55_A           74 MSPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPKYILL  117 (343)
T ss_dssp             ECCC------------------CHHHHHHHHGGGCSSCCSEEEE
T ss_pred             EcCCCcchhhcCCcCCccCccchHHHHHHHHHHHhcCCCCEEEE
Confidence            864311         122222 35667778887777  665554

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=95.94  E-value=0.039  Score=51.01  Aligned_cols=101  Identities=17%  Similarity=0.107  Sum_probs=72.1

Q ss_pred             CeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC--------CCCCcc
Q 020988          168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF--------ASGFVD  239 (319)
Q Consensus       168 ~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~--------~~~~fD  239 (319)
                      .++||+-||.|.++..+.+.|. ..+.++|+++.+++..+.++        ++..++.+|+.++..        ....+|
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~-~~v~avE~d~~a~~t~~~N~--------~~~~~~~~DI~~~~~~~~~~~~~~~~~~D   73 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGF-DVKMAVEIDQHAINTHAINF--------PRSLHVQEDVSLLNAEIIKGFFKNDMPID   73 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTC-EEEEEECSCHHHHHHHHHHC--------TTSEEECCCGGGCCHHHHHHHHCSCCCCC
T ss_pred             CeEEEEccCcCHHHHHHHHCCC-cEEEEEeCCHHHHHHHHHhC--------CCCceEecChhhcCHHHHHhhcccCCCee
Confidence            5899999999999999999885 45679999999988887764        356788899887641        246799


Q ss_pred             EEEecccccC--------CCCH-HHHHHHHHHhhcCCCeeEEEEeec
Q 020988          240 AVHAGAALHC--------WPSP-SNAASVFSSSYSLLSICYLLQFRY  277 (319)
Q Consensus       240 ~V~~~~vl~h--------~~d~-~~~l~el~rvlk~g~~~g~~~~~~  277 (319)
                      +|+...--..        ..|+ ..++.++.++++..+|-.+++=.+
T Consensus        74 ~i~ggpPCQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P~~~v~ENV  120 (376)
T 3g7u_A           74 GIIGGPPCQGFSSIGKGNPDDSRNQLYMHFYRLVSELQPLFFLAENV  120 (376)
T ss_dssp             EEEECCCCCTTC-------CHHHHHHHHHHHHHHHHHCCSEEEEEEC
T ss_pred             EEEecCCCCCcccccCCCCCCchHHHHHHHHHHHHHhCCCEEEEecc
Confidence            9997542111        1222 245677777777777766555433

>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}

Probab=95.66  E-value=0.0014  Score=45.79  Aligned_cols=40  Identities=28%  Similarity=0.583  Sum_probs=22.7

Q ss_pred             cCeeeccCCCccccccCC--CCC---ccc-----------ceecCceeeCccCCcc
Q 020988           58 GDLFSCPICYEPLIRKGP--TGL---TLG-----------AIYRSGFKCRKCDKTY   97 (319)
Q Consensus        58 ~~~l~CP~C~~~l~~~~~--~~~---~~~-----------~i~~~~~~C~~Cg~~f   97 (319)
                      -+|-.||+||++|...+-  ..+   +..           .+..-.+.|+.||..|
T Consensus         6 ~~~~~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP~CgEEF   61 (95)
T 2k5c_A            6 HHMAKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEEF   61 (95)
T ss_dssp             --CEECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECTTTCCEE
T ss_pred             cccccCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCCCccHHH
Confidence            468899999997643100  000   111           1122278999999987

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=95.50  E-value=0.028  Score=50.84  Aligned_cols=59  Identities=10%  Similarity=0.101  Sum_probs=48.9

Q ss_pred             cHHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhh
Q 020988          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ  212 (319)
Q Consensus       151 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~  212 (319)
                      |....+.+.... ..++..|||.-||+|..+..+.+.+.  +.+|+|+++..++.+++++..
T Consensus       238 p~~l~~~~i~~~-~~~~~~VlDpF~GsGtt~~aa~~~gr--~~ig~e~~~~~~~~~~~r~~~  296 (323)
T 1boo_A          238 PAKLPEFFIRML-TEPDDLVVDIFGGSNTTGLVAERESR--KWISFEMKPEYVAASAFRFLD  296 (323)
T ss_dssp             CTHHHHHHHHHH-CCTTCEEEETTCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHGGGSC
T ss_pred             CHHHHHHHHHHh-CCCCCEEEECCCCCCHHHHHHHHcCC--CEEEEeCCHHHHHHHHHHHHh
Confidence            344555555544 46789999999999999999998876  999999999999999998754

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=95.40  E-value=0.041  Score=51.48  Aligned_cols=63  Identities=10%  Similarity=0.075  Sum_probs=47.6

Q ss_pred             ccCCCeEEEEcCCcChHHHHHH-hhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCC-CCeEEEEc
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFA-KSGT-YSGVVALDFSENMLRQCYDFIKQDNTILT-SNLALVRA  226 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~-~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~-~~i~~~~~  226 (319)
                      ..++..++|||++.|.++..++ +.++ ..+|+++|+++...+..+++++....... .++.++..
T Consensus       224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~  289 (409)
T 2py6_A          224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGC  289 (409)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECS
T ss_pred             cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEe
Confidence            3678999999999999999887 5544 36999999999999999998876100012 46666554

>3q87_A Putative uncharacterized protein ECU08_1170; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=95.36  E-value=0.0063  Score=46.86  Aligned_cols=28  Identities=14%  Similarity=0.428  Sum_probs=23.9

Q ss_pred             ceecCceeeCccCCccccCCceeeeccc
Q 020988           82 AIYRSGFKCRKCDKTYSSKDNYLDLTVI  109 (319)
Q Consensus        82 ~i~~~~~~C~~Cg~~f~~~~g~~~~~~~  109 (319)
                      .|..+.+.|++|||.|++++|+++.+..
T Consensus        94 ~V~EG~L~Cp~cgr~ypI~~GIPNm~~~  121 (125)
T 3q87_A           94 DVVEGSLRCDMCGLIYPIKGSIVETVDT  121 (125)
T ss_dssp             EEEEEEEEETTTCCEEEEETTEEECSSC
T ss_pred             EEEEEEEECCCCCCEeeccCCcccHHHh
Confidence            3455889999999999999999999743

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=95.20  E-value=0.048  Score=49.22  Aligned_cols=60  Identities=18%  Similarity=0.321  Sum_probs=48.5

Q ss_pred             CcHHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCH---HHHHHHHHHHhh
Q 020988          150 GPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSE---NMLRQCYDFIKQ  212 (319)
Q Consensus       150 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~---~~l~~a~~~~~~  212 (319)
                      -|....+.+.... ..++..|||.-||+|..+..+.+.+.  +.+|+|+++   ..++.+++|+..
T Consensus       227 kp~~l~~~~i~~~-~~~~~~vlDpF~GsGtt~~aa~~~~r--~~ig~e~~~~~~~~~~~~~~Rl~~  289 (319)
T 1eg2_A          227 KPAAVIERLVRAL-SHPGSTVLDFFAGSGVTARVAIQEGR--NSICTDAAPVFKEYYQKQLTFLQD  289 (319)
T ss_dssp             CCHHHHHHHHHHH-SCTTCEEEETTCTTCHHHHHHHHHTC--EEEEEESSTHHHHHHHHHHHHC--
T ss_pred             CCHHHHHHHHHHh-CCCCCEEEecCCCCCHHHHHHHHcCC--cEEEEECCccHHHHHHHHHHHHHH
Confidence            3455556665554 36789999999999999999999876  999999999   999999998754

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=95.07  E-value=0.094  Score=47.47  Aligned_cols=104  Identities=9%  Similarity=0.046  Sum_probs=73.3

Q ss_pred             CCeEEEEcCCcChHHHHHHhhCC-CCeE-EEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC---CCCCccEE
Q 020988          167 GGLLVDVSCGSGLFSRKFAKSGT-YSGV-VALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF---ASGFVDAV  241 (319)
Q Consensus       167 ~~~VLDiGcG~G~~~~~l~~~g~-~~~v-~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~---~~~~fD~V  241 (319)
                      ..+++|+-||.|.+...+.+.|. ...+ .++|+++.+++.-+.++..        . ++.+|+.++..   +...+|++
T Consensus        10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~--------~-~~~~DI~~~~~~~i~~~~~Dil   80 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE--------E-VQVKNLDSISIKQIESLNCNTW   80 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC--------C-CBCCCTTTCCHHHHHHTCCCEE
T ss_pred             CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC--------C-cccCChhhcCHHHhccCCCCEE
Confidence            46899999999999999998874 2356 7999999999888887632        1 56788887742   22368999


Q ss_pred             Eeccccc-----------CCCCHH-HHHHHHHH-hhcCC--CeeEEEEeeccc
Q 020988          242 HAGAALH-----------CWPSPS-NAASVFSS-SYSLL--SICYLLQFRYTK  279 (319)
Q Consensus       242 ~~~~vl~-----------h~~d~~-~~l~el~r-vlk~g--~~~g~~~~~~~~  279 (319)
                      +.+.--.           ...|+. .++.++.+ +++..  .|-.+++=.+..
T Consensus        81 ~ggpPCQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~~~~lENV~g  133 (327)
T 3qv2_A           81 FMSPPCQPYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPKHIFIENVPL  133 (327)
T ss_dssp             EECCCCTTCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCSEEEEEECGG
T ss_pred             EecCCccCcccccCCCCCCCccccchhHHHHHHHHHHHhccCCCEEEEEchhh
Confidence            9754211           223444 56788888 88877  676655544443

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=95.00  E-value=0.022  Score=50.36  Aligned_cols=103  Identities=7%  Similarity=-0.060  Sum_probs=77.5

Q ss_pred             CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC-CC---CCCCCccEE
Q 020988          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LP---FASGFVDAV  241 (319)
Q Consensus       166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp---~~~~~fD~V  241 (319)
                      .+..+||+=+|+|.++..+.+.+  .+++.+|.++..++..+++++.     ..+++++..|... +.   -+...||+|
T Consensus        91 n~~~~LDlfaGSGaLgiEaLS~~--d~~vfvE~~~~a~~~L~~Nl~~-----~~~~~V~~~D~~~~L~~l~~~~~~fdLV  163 (283)
T 2oo3_A           91 NLNSTLSYYPGSPYFAINQLRSQ--DRLYLCELHPTEYNFLLKLPHF-----NKKVYVNHTDGVSKLNALLPPPEKRGLI  163 (283)
T ss_dssp             SSSSSCCEEECHHHHHHHHSCTT--SEEEEECCSHHHHHHHTTSCCT-----TSCEEEECSCHHHHHHHHCSCTTSCEEE
T ss_pred             cCCCceeEeCCcHHHHHHHcCCC--CeEEEEeCCHHHHHHHHHHhCc-----CCcEEEEeCcHHHHHHHhcCCCCCccEE
Confidence            45779999999999999999855  5999999999999998888754     3579999999644 21   233579999


Q ss_pred             EecccccCCCCHHHHHHHHHH--hhcCCCeeEEEEe
Q 020988          242 HAGAALHCWPSPSNAASVFSS--SYSLLSICYLLQF  275 (319)
Q Consensus       242 ~~~~vl~h~~d~~~~l~el~r--vlk~g~~~g~~~~  275 (319)
                      ++---.+.-.+..++++.+.+  .+.+.|..-+++.
T Consensus       164 fiDPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~WYP  199 (283)
T 2oo3_A          164 FIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCVWYP  199 (283)
T ss_dssp             EECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred             EECCCCCCCcHHHHHHHHHHHhCccCCCeEEEEEEe
Confidence            997766644456666666666  4456776666665

>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=94.60  E-value=0.013  Score=37.59  Aligned_cols=34  Identities=21%  Similarity=0.366  Sum_probs=24.1

Q ss_pred             ccccCeeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988           55 ELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        55 ~~~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      .+....--||.||+++.....         ...+.|..||.++
T Consensus        14 kv~~~~k~CP~CG~~~fm~~~---------~~R~~C~kCG~t~   47 (50)
T 3j20_Y           14 KVIRKNKFCPRCGPGVFMADH---------GDRWACGKCGYTE   47 (50)
T ss_dssp             CEECSSEECSSSCSSCEEEEC---------SSEEECSSSCCEE
T ss_pred             EEEEecccCCCCCCceEEecC---------CCeEECCCCCCEE
Confidence            455556679999996543321         2678999999986

>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...

Probab=94.57  E-value=0.011  Score=42.24  Aligned_cols=30  Identities=23%  Similarity=0.627  Sum_probs=23.3

Q ss_pred             CeeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      .-+.||.|+..+.....         .+.+.|+.|++.|
T Consensus        26 ~~y~Cp~CG~~~v~r~a---------tGiW~C~~Cg~~~   55 (83)
T 1vq8_Z           26 EDHACPNCGEDRVDRQG---------TGIWQCSYCDYKF   55 (83)
T ss_dssp             SCEECSSSCCEEEEEEE---------TTEEEETTTCCEE
T ss_pred             ccCcCCCCCCcceeccC---------CCeEECCCCCCEe
Confidence            46899999997654322         3789999999987

>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1

Probab=94.46  E-value=0.016  Score=38.28  Aligned_cols=45  Identities=22%  Similarity=0.313  Sum_probs=24.8

Q ss_pred             ccccCeeeccCCCccc-cccCCCCCcccceecCceeeCccCCcccc
Q 020988           55 ELEGDLFSCPICYEPL-IRKGPTGLTLGAIYRSGFKCRKCDKTYSS   99 (319)
Q Consensus        55 ~~~~~~l~CP~C~~~l-~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~   99 (319)
                      +++.....||.|+..- ........+.++.+...+.|.+||+.+..
T Consensus        10 ~~~~~~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~   55 (57)
T 1qyp_A           10 TLPTTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS   55 (57)
T ss_dssp             SSCEEECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred             cCCceEeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence            3444468899999831 11100011112223357899999998743

>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5

Probab=94.12  E-value=0.023  Score=43.57  Aligned_cols=35  Identities=20%  Similarity=0.468  Sum_probs=27.0

Q ss_pred             cccccCeeeccCCCccccccCCCCCcccceecCceeeCccCCccc
Q 020988           54 LELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (319)
Q Consensus        54 ~~~~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~   98 (319)
                      ..++..+-.||.|++.....+.          ..+.|+.|+|.|.
T Consensus        21 g~~M~~lP~CP~C~seytYeDg----------~l~vCPeC~hEW~   55 (138)
T 2akl_A           21 GHMVSTLPPCPQCNSEYTYEDG----------ALLVCPECAHEWS   55 (138)
T ss_dssp             --CCCCSCCCTTTCCCCCEECS----------SSEEETTTTEEEC
T ss_pred             ccccccCCCCCCCCCcceEecC----------CeEECCccccccC
Confidence            3455567889999998876653          6799999999994

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=94.08  E-value=1  Score=40.25  Aligned_cols=116  Identities=14%  Similarity=0.077  Sum_probs=71.2

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC---
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---  232 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---  232 (319)
                      +.+..++.. ....|+++|||-=.....+.. ....+++=+| .|..++..++.+.+.+.....+..++.+|+.+ .   
T Consensus        93 ~~v~~~~~~-g~~QvV~LGaGlDTra~Rl~~-~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~  168 (310)
T 2uyo_A           93 TYFNNAVID-GIRQFVILASGLDSRAYRLDW-PTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPP  168 (310)
T ss_dssp             HHHHHHHHT-TCCEEEEETCTTCCHHHHSCC-CTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHH
T ss_pred             HHHHHHHHh-CCCeEEEeCCCCCchhhhccC-CCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHH
Confidence            344444432 235799999998777555542 1236899999 59999999988864322234678899999976 3   


Q ss_pred             ------CCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988          233 ------FASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFR  276 (319)
Q Consensus       233 ------~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~  276 (319)
                            +....--++++-++++++++ +...+-+..+.....++..++++
T Consensus       169 ~l~~~g~d~~~Pt~~i~Egvl~Yl~~-~~~~~ll~~l~~~~~~gs~l~~d  217 (310)
T 2uyo_A          169 ALRSAGFDPSARTAWLAEGLLMYLPA-TAQDGLFTEIGGLSAVGSRIAVE  217 (310)
T ss_dssp             HHHHTTCCTTSCEEEEECSCGGGSCH-HHHHHHHHHHHHTCCTTCEEEEE
T ss_pred             HHHhccCCCCCCEEEEEechHhhCCH-HHHHHHHHHHHHhCCCCeEEEEE
Confidence                  11223456777789999965 33333333333333344555553

>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A

Probab=93.85  E-value=0.031  Score=37.04  Aligned_cols=30  Identities=17%  Similarity=0.372  Sum_probs=21.6

Q ss_pred             CeeeccCCCc-cccccCCCCCcccceecCceeeCccCCcc
Q 020988           59 DLFSCPICYE-PLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        59 ~~l~CP~C~~-~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      ..+.||.|++ ++.....         .+.+.|..||.++
T Consensus        10 ~~~~Cp~C~~~~lv~D~~---------~ge~vC~~CGlVl   40 (58)
T 1dl6_A           10 PRVTCPNHPDAILVEDYR---------AGDMICPECGLVV   40 (58)
T ss_dssp             SCCSBTTBSSSCCEECSS---------SCCEECTTTCCEE
T ss_pred             ccccCcCCCCCceeEeCC---------CCeEEeCCCCCEE
Confidence            3457999998 5544321         3678999999987

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=93.83  E-value=0.24  Score=45.80  Aligned_cols=77  Identities=13%  Similarity=0.147  Sum_probs=53.8

Q ss_pred             CCCeEEEEcCCcChHHHHHHhhC-------CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCc
Q 020988          166 QGGLLVDVSCGSGLFSRKFAKSG-------TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFV  238 (319)
Q Consensus       166 ~~~~VLDiGcG~G~~~~~l~~~g-------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~f  238 (319)
                      .+-.|+|+|.|+|.++..+.+..       ...+++.||+|+...+.-++++...     .++.+.. ++.++|-  . .
T Consensus        80 ~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~-----~~v~W~~-~l~~lp~--~-~  150 (387)
T 1zkd_A           80 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI-----RNIHWHD-SFEDVPE--G-P  150 (387)
T ss_dssp             SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC-----SSEEEES-SGGGSCC--S-S
T ss_pred             CCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCC-----CCeEEeC-ChhhcCC--C-C
Confidence            34579999999999988776541       2348999999999888777766442     2465542 4555552  2 4


Q ss_pred             cEEEecccccCCC
Q 020988          239 DAVHAGAALHCWP  251 (319)
Q Consensus       239 D~V~~~~vl~h~~  251 (319)
                      -+|+++.+|..+|
T Consensus       151 ~~viANE~fDAlP  163 (387)
T 1zkd_A          151 AVILANEYFDVLP  163 (387)
T ss_dssp             EEEEEESSGGGSC
T ss_pred             eEEEeccccccCc
Confidence            5788888887776

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=93.54  E-value=0.16  Score=45.94  Aligned_cols=101  Identities=11%  Similarity=0.039  Sum_probs=67.6

Q ss_pred             CCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC-CCCccEEEecc
Q 020988          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVHAGA  245 (319)
Q Consensus       167 ~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~~fD~V~~~~  245 (319)
                      +.++||+.||.|.+...+.+.|. ..+.++|+++.+++..+.+....          ..+|+.++... -..+|+|+...
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG~-~~v~~~e~d~~a~~t~~~N~~~~----------~~~Di~~~~~~~~~~~D~l~~gp   79 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCGA-ECVYSNEWDKYAQEVYEMNFGEK----------PEGDITQVNEKTIPDHDILCAGF   79 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTC-EEEEEECCCHHHHHHHHHHHSCC----------CBSCGGGSCGGGSCCCSEEEEEC
T ss_pred             CCcEEEECCCcCHHHHHHHHCCC-eEEEEEeCCHHHHHHHHHHcCCC----------CcCCHHHcCHhhCCCCCEEEECC
Confidence            57899999999999999998875 46889999999999888886431          15777765421 13589999753


Q ss_pred             cccC---------CCCHH-HHHHHHHHhhcCCCeeEEEEeecc
Q 020988          246 ALHC---------WPSPS-NAASVFSSSYSLLSICYLLQFRYT  278 (319)
Q Consensus       246 vl~h---------~~d~~-~~l~el~rvlk~g~~~g~~~~~~~  278 (319)
                      --..         +.|+. .++.++.|+++..+|-.+++=.+.
T Consensus        80 PCQ~fS~ag~~~g~~d~r~~L~~~~~r~i~~~~P~~~~~ENV~  122 (327)
T 2c7p_A           80 PCQAFSISGKQKGFEDSRGTLFFDIARIVREKKPKVVFMENVK  122 (327)
T ss_dssp             CCTTTCTTSCCCGGGSTTSCHHHHHHHHHHHHCCSEEEEEEEG
T ss_pred             CCCCcchhcccCCCcchhhHHHHHHHHHHHhccCcEEEEeCcH
Confidence            1111         12332 356667776666666554443333

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=93.31  E-value=0.18  Score=46.65  Aligned_cols=99  Identities=12%  Similarity=0.000  Sum_probs=62.1

Q ss_pred             HHhhccCCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-C-----
Q 020988          160 EYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P-----  232 (319)
Q Consensus       160 ~~l~~~~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p-----  232 (319)
                      ......++.+||-+|+|. |.++.++++.....+|+++|.+++.++.+++.          +.+++..+-.+. .     
T Consensus       179 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----------Ga~~i~~~~~~~~~~~~~~  248 (398)
T 2dph_A          179 VSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDA----------GFETIDLRNSAPLRDQIDQ  248 (398)
T ss_dssp             HHTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTT----------TCEEEETTSSSCHHHHHHH
T ss_pred             HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----------CCcEEcCCCcchHHHHHHH
Confidence            345567899999999986 88888888763323899999999988877642          223332211111 0     


Q ss_pred             C-CCCCccEEEeccccc---------CCCCHHHHHHHHHHhhcCCCe
Q 020988          233 F-ASGFVDAVHAGAALH---------CWPSPSNAASVFSSSYSLLSI  269 (319)
Q Consensus       233 ~-~~~~fD~V~~~~vl~---------h~~d~~~~l~el~rvlk~g~~  269 (319)
                      . ....+|+|+-.-.-.         |. ++...+++..++++++|.
T Consensus       249 ~~~g~g~Dvvid~~g~~~~~~~~~~~~~-~~~~~~~~~~~~l~~gG~  294 (398)
T 2dph_A          249 ILGKPEVDCGVDAVGFEAHGLGDEANTE-TPNGALNSLFDVVRAGGA  294 (398)
T ss_dssp             HHSSSCEEEEEECSCTTCBCSGGGTTSB-CTTHHHHHHHHHEEEEEE
T ss_pred             HhCCCCCCEEEECCCCcccccccccccc-ccHHHHHHHHHHHhcCCE
Confidence            0 123699998654322         11 123457777788777654

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=93.26  E-value=0.45  Score=43.81  Aligned_cols=100  Identities=12%  Similarity=0.081  Sum_probs=64.7

Q ss_pred             HhhccCCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC-CC------
Q 020988          161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LP------  232 (319)
Q Consensus       161 ~l~~~~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp------  232 (319)
                      .....++.+||-+|+|. |.++.++++.....+|+++|.+++.++.+++.          +.+.+...-.+ +.      
T Consensus       180 ~~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~l----------Ga~~i~~~~~~~~~~~v~~~  249 (398)
T 1kol_A          180 TAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----------GFEIADLSLDTPLHEQIAAL  249 (398)
T ss_dssp             HTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----------TCEEEETTSSSCHHHHHHHH
T ss_pred             HcCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHc----------CCcEEccCCcchHHHHHHHH
Confidence            34567889999999876 88888888874334799999999988888652          22333221111 00      


Q ss_pred             CCCCCccEEEecccc---------cCCCCHHHHHHHHHHhhcCCCee
Q 020988          233 FASGFVDAVHAGAAL---------HCWPSPSNAASVFSSSYSLLSIC  270 (319)
Q Consensus       233 ~~~~~fD~V~~~~vl---------~h~~d~~~~l~el~rvlk~g~~~  270 (319)
                      .....+|+|+-.-.-         .|.+++...+++..++++++|..
T Consensus       250 t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~i  296 (398)
T 1kol_A          250 LGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKI  296 (398)
T ss_dssp             HSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEE
T ss_pred             hCCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEE
Confidence            012469999875432         13345556778888888876544

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=92.92  E-value=0.16  Score=45.18  Aligned_cols=98  Identities=11%  Similarity=-0.051  Sum_probs=66.8

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCe-EEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC----CCCcc
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA----SGFVD  239 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~----~~~fD  239 (319)
                      ....+++|+=||.|.+...+.+.|.... |.++|+++.+++.-+.+.        ++..++.+|+.++...    ...+|
T Consensus        14 ~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~--------~~~~~~~~DI~~i~~~~i~~~~~~D   85 (295)
T 2qrv_A           14 RKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRH--------QGKIMYVGDVRSVTQKHIQEWGPFD   85 (295)
T ss_dssp             CCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHT--------TTCEEEECCGGGCCHHHHHHTCCCS
T ss_pred             CCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhC--------CCCceeCCChHHccHHHhcccCCcC
Confidence            4567899999999999999999886333 699999999887776654        2446788898876421    13699


Q ss_pred             EEEecc-----cccC-----CCCHH-HHHHHHHHhhcCCCee
Q 020988          240 AVHAGA-----ALHC-----WPSPS-NAASVFSSSYSLLSIC  270 (319)
Q Consensus       240 ~V~~~~-----vl~h-----~~d~~-~~l~el~rvlk~g~~~  270 (319)
                      +|+...     +.-.     +.|+. .++.++.|+++..+|-
T Consensus        86 ll~ggpPCQ~fS~ag~~r~g~~d~r~~L~~~~~rii~~~~P~  127 (295)
T 2qrv_A           86 LVIGGSPCNDLSIVNPARKGLYEGTGRLFFEFYRLLHDARPK  127 (295)
T ss_dssp             EEEECCCCGGGBTTCTTCCTTTSTTTTHHHHHHHHHHHHSCC
T ss_pred             EEEecCCCccccccCccccccccccchhHHHHHHHHHHhCcc
Confidence            999753     2211     33332 4566666666555444

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=92.69  E-value=0.29  Score=45.85  Aligned_cols=46  Identities=9%  Similarity=0.164  Sum_probs=37.0

Q ss_pred             CCeEEEEcCCcChHHHHHHhhC----C-CCeEEEEeCCHHHHHHHHHHHhh
Q 020988          167 GGLLVDVSCGSGLFSRKFAKSG----T-YSGVVALDFSENMLRQCYDFIKQ  212 (319)
Q Consensus       167 ~~~VLDiGcG~G~~~~~l~~~g----~-~~~v~gvD~s~~~l~~a~~~~~~  212 (319)
                      ...|+|+|.|+|.++..+.+..    + ..+++.||+|+.+.+.-++++..
T Consensus       138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~  188 (432)
T 4f3n_A          138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGA  188 (432)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHH
T ss_pred             CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhc
Confidence            4799999999999887776542    1 24799999999998888888764

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=92.64  E-value=0.14  Score=46.53  Aligned_cols=104  Identities=15%  Similarity=0.131  Sum_probs=70.9

Q ss_pred             CeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC---CCCCCccEEEe
Q 020988          168 GLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFVDAVHA  243 (319)
Q Consensus       168 ~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~fD~V~~  243 (319)
                      .+++|+-||.|.+...+.+.|. ...+.++|+++.+++.-+.++.        ...++.+|+.++.   ++...+|+++.
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~--------~~~~~~~DI~~~~~~~~~~~~~D~l~g   75 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP--------ETNLLNRNIQQLTPQVIKKWNVDTILM   75 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT--------TSCEECCCGGGCCHHHHHHTTCCEEEE
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC--------CCceeccccccCCHHHhccCCCCEEEe
Confidence            4799999999999999988874 2358899999998888877652        3446778887764   22236899986


Q ss_pred             ccc---c------cCCCCHH-HHHHHHHHhhcCCC-eeEEEEeeccc
Q 020988          244 GAA---L------HCWPSPS-NAASVFSSSYSLLS-ICYLLQFRYTK  279 (319)
Q Consensus       244 ~~v---l------~h~~d~~-~~l~el~rvlk~g~-~~g~~~~~~~~  279 (319)
                      +.-   +      ....|+. .++.++.++++..+ |-.+++=.+..
T Consensus        76 gpPCQ~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~~P~~~vlENV~g  122 (333)
T 4h0n_A           76 SPPCQPFTRNGKYLDDNDPRTNSFLYLIGILDQLDNVDYILMENVKG  122 (333)
T ss_dssp             CCCCCCSEETTEECCTTCTTSCCHHHHHHHGGGCTTCCEEEEEECTT
T ss_pred             cCCCcchhhhhhccCCcCcccccHHHHHHHHHHhcCCCEEEEecchh
Confidence            431   1      1223332 45677888887775 66555443333

>2j6a_A Protein TRM112; translation termination, methyltransferase, transferase, ERF1, nuclear protein, protein methylation; 1.7A {Saccharomyces cerevisiae}

Probab=92.55  E-value=0.043  Score=43.09  Aligned_cols=28  Identities=29%  Similarity=0.555  Sum_probs=24.4

Q ss_pred             eecCceeeCccCCccccCCceeeecccc
Q 020988           83 IYRSGFKCRKCDKTYSSKDNYLDLTVIS  110 (319)
Q Consensus        83 i~~~~~~C~~Cg~~f~~~~g~~~~~~~~  110 (319)
                      +..+.+.|++||+.|++++|+++++...
T Consensus       105 v~eg~L~C~~cg~~YPI~dGIP~mL~~e  132 (141)
T 2j6a_A          105 IAEGEMKCRNCGHIYYIKNGIPNLLLPP  132 (141)
T ss_dssp             EEEEEEECTTTCCEEEEETTEESSCCCS
T ss_pred             ccCCEEECCCCCCcccccCCccCcCCcH
Confidence            4457899999999999999999998654

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=92.22  E-value=0.59  Score=41.82  Aligned_cols=103  Identities=13%  Similarity=0.174  Sum_probs=73.2

Q ss_pred             CeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC-CCCccEEEecc-
Q 020988          168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVHAGA-  245 (319)
Q Consensus       168 ~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~~fD~V~~~~-  245 (319)
                      .+|||+=||.|.+..-+.+.|. .-+.++|+++.+++.-+.+.         .-.++.+|+.++... -..+|+|+.+. 
T Consensus         1 mkvidLFsG~GG~~~G~~~aG~-~~v~a~e~d~~a~~ty~~N~---------~~~~~~~DI~~i~~~~~~~~D~l~ggpP   70 (331)
T 3ubt_Y            1 MNLISLFSGAGGLDLGFQKAGF-RIICANEYDKSIWKTYESNH---------SAKLIKGDISKISSDEFPKCDGIIGGPP   70 (331)
T ss_dssp             CEEEEESCTTCHHHHHHHHTTC-EEEEEEECCTTTHHHHHHHC---------CSEEEESCGGGCCGGGSCCCSEEECCCC
T ss_pred             CeEEEeCcCccHHHHHHHHCCC-EEEEEEeCCHHHHHHHHHHC---------CCCcccCChhhCCHhhCCcccEEEecCC
Confidence            4799999999999999988885 45779999999888777764         235788999877422 24689998643 


Q ss_pred             ----cc----cCCCCHH-HHHHHHHHhhcCCCeeEEEEeeccch
Q 020988          246 ----AL----HCWPSPS-NAASVFSSSYSLLSICYLLQFRYTKI  280 (319)
Q Consensus       246 ----vl----~h~~d~~-~~l~el~rvlk~g~~~g~~~~~~~~~  280 (319)
                          +.    ..+.|+. .++.++.|+++..+|-.+++=.+..+
T Consensus        71 CQ~fS~ag~~~g~~d~R~~L~~~~~r~i~~~~Pk~~~~ENV~gl  114 (331)
T 3ubt_Y           71 SQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPIFFLAENVKGM  114 (331)
T ss_dssp             GGGTEETTEECCTTCGGGHHHHHHHHHHHHHCCSEEEEEECCGG
T ss_pred             CCCcCCCCCccCCCCchhHHHHHHHHHHhccCCeEEEeeeeccc
Confidence                11    1244554 67788888887777776655544444

>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=92.03  E-value=0.067  Score=34.23  Aligned_cols=41  Identities=17%  Similarity=0.368  Sum_probs=23.1

Q ss_pred             cCeeeccCCCccccc-cCCCCCcccceecCceeeCccCCccc
Q 020988           58 GDLFSCPICYEPLIR-KGPTGLTLGAIYRSGFKCRKCDKTYS   98 (319)
Q Consensus        58 ~~~l~CP~C~~~l~~-~~~~~~~~~~i~~~~~~C~~Cg~~f~   98 (319)
                      .....||.|+..-.. ......+.++-+.-.+.|.+|||.|.
T Consensus         7 t~~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w~   48 (50)
T 1tfi_A            7 TDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK   48 (50)
T ss_dssp             CCCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEEE
T ss_pred             eCccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeEE
Confidence            456789999983110 00011122222335789999999873

>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}

Probab=91.74  E-value=0.092  Score=36.15  Aligned_cols=30  Identities=23%  Similarity=0.692  Sum_probs=22.0

Q ss_pred             CeeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      .-+.||.|+..-.....         .+++.|..|+..|
T Consensus        25 ~ky~C~fCgk~~vkR~a---------~GIW~C~~C~~~~   54 (72)
T 3jyw_9           25 ARYDCSFCGKKTVKRGA---------AGIWTCSCCKKTV   54 (72)
T ss_dssp             SCBCCSSCCSSCBSBCS---------SSCBCCSSSCCCC
T ss_pred             cCccCCCCCCceeEecC---------CCeEECCCCCCEE
Confidence            35789999985433221         3789999999987

>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z

Probab=91.64  E-value=0.069  Score=40.23  Aligned_cols=29  Identities=31%  Similarity=0.762  Sum_probs=22.3

Q ss_pred             CeeeccCCCc-cccccCCCCCcccceecCceeeCccCCcc
Q 020988           59 DLFSCPICYE-PLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        59 ~~l~CP~C~~-~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      .-+.||.|+. .+.+..          .+++.|..|+..|
T Consensus        59 akytCPfCGk~~vKR~a----------vGIW~C~~Cgk~f   88 (116)
T 3cc2_Z           59 EDHACPNCGEDRVDRQG----------TGIWQCSYCDYKF   88 (116)
T ss_dssp             SCEECSSSCCEEEEEEE----------TTEEEETTTCCEE
T ss_pred             cCCcCCCCCCceeEecC----------ceeEECCCCCCEE
Confidence            5689999998 343333          2789999999987

>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=91.62  E-value=0.069  Score=37.86  Aligned_cols=29  Identities=24%  Similarity=0.753  Sum_probs=21.4

Q ss_pred             eeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      -+.||.|+..-....         ..+++.|..|+..|
T Consensus        35 ky~CpfCGk~~vkR~---------a~GIW~C~kCg~~~   63 (83)
T 3j21_i           35 KHTCPVCGRKAVKRI---------STGIWQCQKCGATF   63 (83)
T ss_dssp             CBCCSSSCSSCEEEE---------ETTEEEETTTCCEE
T ss_pred             ccCCCCCCCceeEec---------CcCeEEcCCCCCEE
Confidence            578999998532221         13789999999987

>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8

Probab=91.37  E-value=0.12  Score=33.80  Aligned_cols=35  Identities=20%  Similarity=0.358  Sum_probs=25.2

Q ss_pred             cccccCeeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988           54 LELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        54 ~~~~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      ..+...+..||.||+.+.....         .+.+.|..|+.++
T Consensus        12 gki~~~~~fCPkCG~~~~ma~~---------~dr~~C~kCgyt~   46 (55)
T 2k4x_A           12 GKLVRKHRFCPRCGPGVFLAEH---------ADRYSCGRCGYTE   46 (55)
T ss_dssp             CCCCCSSCCCTTTTTTCCCEEC---------SSEEECTTTCCCE
T ss_pred             CEEEEccccCcCCCCceeEecc---------CCEEECCCCCCEE
Confidence            3466678889999996543211         2578999999886

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=91.23  E-value=0.64  Score=42.33  Aligned_cols=93  Identities=17%  Similarity=0.126  Sum_probs=57.6

Q ss_pred             hhccCCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-----CCCC
Q 020988          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----PFAS  235 (319)
Q Consensus       162 l~~~~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-----p~~~  235 (319)
                      ....++.+||-+|+|. |.++.++++.....+|+++|.+++.++.+++.-       . . .++..+-.++     ...+
T Consensus       186 ~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lG-------a-~-~vi~~~~~~~~~~~~~~~~  256 (371)
T 1f8f_A          186 LKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLG-------A-T-HVINSKTQDPVAAIKEITD  256 (371)
T ss_dssp             TCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHT-------C-S-EEEETTTSCHHHHHHHHTT
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcC-------C-C-EEecCCccCHHHHHHHhcC
Confidence            4456889999999986 788888877632236999999999888887541       1 1 1222211111     0112


Q ss_pred             CCccEEEecccccCCCCHHHHHHHHHHhhcCCCe
Q 020988          236 GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSI  269 (319)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~  269 (319)
                      +.+|+|+-.     ... ...+++..++++++|.
T Consensus       257 gg~D~vid~-----~g~-~~~~~~~~~~l~~~G~  284 (371)
T 1f8f_A          257 GGVNFALES-----TGS-PEILKQGVDALGILGK  284 (371)
T ss_dssp             SCEEEEEEC-----SCC-HHHHHHHHHTEEEEEE
T ss_pred             CCCcEEEEC-----CCC-HHHHHHHHHHHhcCCE
Confidence            379999754     222 2346667777766654

>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1

Probab=90.78  E-value=0.12  Score=37.49  Aligned_cols=26  Identities=27%  Similarity=0.713  Sum_probs=21.3

Q ss_pred             eeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      ..||.|+++|.+.+           +.+.|..|+..|
T Consensus        33 ~~CP~Cq~eL~~~g-----------~~~hC~~C~~~f   58 (101)
T 2jne_A           33 LHCPQCQHVLDQDN-----------GHARCRSCGEFI   58 (101)
T ss_dssp             CBCSSSCSBEEEET-----------TEEEETTTCCEE
T ss_pred             ccCccCCCcceecC-----------CEEECccccchh
Confidence            78999999998764           556788888877

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=90.78  E-value=2.3  Score=36.83  Aligned_cols=109  Identities=16%  Similarity=0.129  Sum_probs=68.8

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhh-------CCCCeEEEEe-----CCHH-------------------HHHHHHHHHh--
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKS-------GTYSGVVALD-----FSEN-------------------MLRQCYDFIK--  211 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~-------g~~~~v~gvD-----~s~~-------------------~l~~a~~~~~--  211 (319)
                      .-++.|+|+|+-.|..+..++..       ++..+++|+|     +.+.                   ..+..++.+.  
T Consensus        68 ~vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~  147 (257)
T 3tos_A           68 DVPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAH  147 (257)
T ss_dssp             TSCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHH
T ss_pred             CCCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHH
Confidence            34679999999999977775542       4567999999     3221                   0111111111  


Q ss_pred             -hc-CccC-CCCeEEEEcCCCC-CC-----CCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEeecc
Q 020988          212 -QD-NTIL-TSNLALVRADVCR-LP-----FASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFRYT  278 (319)
Q Consensus       212 -~~-~~~~-~~~i~~~~~d~~~-lp-----~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~~~  278 (319)
                       .. .... ..+++++.|++.+ +|     .+..+||+|++-.-.     .......+..++..+.++|++++..+
T Consensus       148 ~~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~-----Y~~t~~~le~~~p~l~~GGvIv~DD~  218 (257)
T 3tos_A          148 ECSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL-----YEPTKAVLEAIRPYLTKGSIVAFDEL  218 (257)
T ss_dssp             HTTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC-----HHHHHHHHHHHGGGEEEEEEEEESST
T ss_pred             hhhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc-----cchHHHHHHHHHHHhCCCcEEEEcCC
Confidence             00 0111 3789999999865 33     235679999886421     23445566667777888999999665

>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}

Probab=90.77  E-value=0.24  Score=37.41  Aligned_cols=46  Identities=13%  Similarity=0.229  Sum_probs=27.8

Q ss_pred             ccccccCeeeccCCCccc-cccCCCCCcccceecCceeeCccCCccc
Q 020988           53 TLELEGDLFSCPICYEPL-IRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (319)
Q Consensus        53 ~~~~~~~~l~CP~C~~~l-~~~~~~~~~~~~i~~~~~~C~~Cg~~f~   98 (319)
                      .++++..-..||.|+..- ........+.++-....+.|.+|||.|.
T Consensus        65 ~~tlp~~~~~Cp~C~~~~a~~~q~q~rsade~mt~fy~C~~C~~~w~  111 (113)
T 3h0g_I           65 DPTLPRSDKECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGFAFE  111 (113)
T ss_dssp             CSSSCBCCSCCSSSCCSCEEEECCCCSSCCCCCCCEEEESSSCCCCC
T ss_pred             cccCCCcccCCCCCCCceEEEEEEecccCCCCCeeEEEcCCCCCEEe
Confidence            456666668999999831 1111112222333445789999999874

>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*

Probab=90.57  E-value=0.077  Score=36.73  Aligned_cols=29  Identities=31%  Similarity=0.724  Sum_probs=22.1

Q ss_pred             CeeeccCCCcc-ccccCCCCCcccceecCceeeCccCCcc
Q 020988           59 DLFSCPICYEP-LIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        59 ~~l~CP~C~~~-l~~~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      .-..||.|+.. +.+..          .+++.|..|+..|
T Consensus        26 ~ky~C~fCgk~~vkR~a----------~GIW~C~~C~~~~   55 (73)
T 1ffk_W           26 KKYKCPVCGFPKLKRAS----------TSIWVCGHCGYKI   55 (73)
T ss_pred             cCccCCCCCCceeEEEE----------eEEEECCCCCcEE
Confidence            46789999983 43332          2789999999987

>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y

Probab=90.42  E-value=0.093  Score=38.59  Aligned_cols=30  Identities=23%  Similarity=0.710  Sum_probs=21.8

Q ss_pred             CeeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      .-+.||.|+..-....         ..+++.|..|+..|
T Consensus        35 aky~CpfCgk~~vKR~---------a~GIW~C~kCg~~~   64 (103)
T 4a17_Y           35 AKYGCPFCGKVAVKRA---------AVGIWKCKPCKKII   64 (103)
T ss_dssp             SCEECTTTCCEEEEEE---------ETTEEEETTTTEEE
T ss_pred             cCCCCCCCCCceeeec---------CcceEEcCCCCCEE
Confidence            3578999998533221         13789999999987

>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1

Probab=90.16  E-value=0.15  Score=35.13  Aligned_cols=30  Identities=30%  Similarity=0.652  Sum_probs=22.0

Q ss_pred             eeeccCCCccccccCCCCCcccceecCceeeCccCCccccC
Q 020988           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK  100 (319)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~~  100 (319)
                      ++.|| |+..+.....         .....|+ ||......
T Consensus         4 vv~C~-C~~~~~~~~~---------~kT~~C~-CG~~~~~~   33 (71)
T 1gh9_A            4 IFRCD-CGRALYSREG---------AKTRKCV-CGRTVNVK   33 (71)
T ss_dssp             EEEET-TSCCEEEETT---------CSEEEET-TTEEEECC
T ss_pred             EEECC-CCCEEEEcCC---------CcEEECC-CCCeeeec
Confidence            67899 9997655442         2567899 99988543

>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}

Probab=89.96  E-value=0.2  Score=33.51  Aligned_cols=30  Identities=17%  Similarity=0.485  Sum_probs=22.9

Q ss_pred             CeeeccCCCccccccCCCCCcccceecCceeeCccCCccc
Q 020988           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (319)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~   98 (319)
                      -.+.|..|+.......          ....+|+.||+...
T Consensus        20 v~Y~C~~Cg~~~~l~~----------~~~iRC~~CG~RIL   49 (63)
T 3h0g_L           20 MIYLCADCGARNTIQA----------KEVIRCRECGHRVM   49 (63)
T ss_dssp             CCCBCSSSCCBCCCCS----------SSCCCCSSSCCCCC
T ss_pred             eEEECCCCCCeeecCC----------CCceECCCCCcEEE
Confidence            4689999999765442          25689999999763

>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A

Probab=89.69  E-value=0.27  Score=40.39  Aligned_cols=40  Identities=20%  Similarity=0.371  Sum_probs=24.6

Q ss_pred             cCeeeccCCCcccc-ccCCCCCcccceecCceeeCccCCcc
Q 020988           58 GDLFSCPICYEPLI-RKGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        58 ~~~l~CP~C~~~l~-~~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      ...+.||.|+..-. .......+.++-+...+.|.+|||.|
T Consensus       135 t~~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~w  175 (178)
T 3po3_S          135 TDRFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGNRW  175 (178)
T ss_dssp             BSSSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCCEE
T ss_pred             cCCcCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCCee
Confidence            56789999998321 11111222233344688999999987

>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...

Probab=89.56  E-value=0.16  Score=34.96  Aligned_cols=29  Identities=17%  Similarity=0.508  Sum_probs=21.8

Q ss_pred             cCeeeccCCCccccccCCCCCcccceecCceeeCccCCc
Q 020988           58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT   96 (319)
Q Consensus        58 ~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~   96 (319)
                      .-.+.|+.|+..+..+..          ...+|+.||+.
T Consensus        26 ~v~Y~C~~CG~~~e~~~~----------d~irCp~CG~R   54 (70)
T 1twf_L           26 TLKYICAECSSKLSLSRT----------DAVRCKDCGHR   54 (70)
T ss_dssp             CCCEECSSSCCEECCCTT----------STTCCSSSCCC
T ss_pred             eEEEECCCCCCcceeCCC----------CCccCCCCCce
Confidence            456889999998655432          45689999993

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=88.66  E-value=0.64  Score=44.27  Aligned_cols=72  Identities=17%  Similarity=0.199  Sum_probs=51.4

Q ss_pred             HHHHHHHHhhcc------CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcC
Q 020988          154 EFKMAQEYFKSA------QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD  227 (319)
Q Consensus       154 ~~~~l~~~l~~~------~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d  227 (319)
                      +...+..+++..      ...+++|+=||.|.+..-+.+.|. ..|.++|+++.+++.-+.++..     .++..++.+|
T Consensus        69 ~~~~l~~~~~~~p~~~~~~~~~viDLFaG~GGlslG~~~aG~-~~v~avE~d~~A~~ty~~N~~~-----~p~~~~~~~D  142 (482)
T 3me5_A           69 EFAHLQTLLPKPPEHHPHYAFRFIDLFAGIGGIRRGFESIGG-QCVFTSEWNKHAVRTYKANHYC-----DPATHHFNED  142 (482)
T ss_dssp             HHHHHHTTSCCCCTTTTCCSEEEEEESCTTSHHHHHHHTTTE-EEEEEECCCHHHHHHHHHHSCC-----CTTTCEEESC
T ss_pred             HHHHHHhhCCCCCccCCCccceEEEecCCccHHHHHHHHCCC-EEEEEEeCCHHHHHHHHHhccc-----CCCcceeccc
Confidence            345565555432      245899999999999999988875 3589999999888777766421     1344567788


Q ss_pred             CCCC
Q 020988          228 VCRL  231 (319)
Q Consensus       228 ~~~l  231 (319)
                      +.++
T Consensus       143 I~~i  146 (482)
T 3me5_A          143 IRDI  146 (482)
T ss_dssp             THHH
T ss_pred             hhhh
Confidence            8664

>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}

Probab=88.42  E-value=0.22  Score=35.09  Aligned_cols=26  Identities=35%  Similarity=0.990  Sum_probs=17.5

Q ss_pred             eeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      ..||.|++++...+           +...|..|+..|
T Consensus         3 ~~CP~C~~~l~~~~-----------~~~~C~~C~~~~   28 (81)
T 2jrp_A            3 ITCPVCHHALERNG-----------DTAHCETCAKDF   28 (81)
T ss_dssp             CCCSSSCSCCEECS-----------SEEECTTTCCEE
T ss_pred             CCCCCCCCccccCC-----------CceECccccccC
Confidence            56888888877653           345566666665

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=87.99  E-value=1.6  Score=33.50  Aligned_cols=66  Identities=21%  Similarity=0.183  Sum_probs=45.0

Q ss_pred             CCeEEEEcCCc-Ch-HHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC----CCCCCccE
Q 020988          167 GGLLVDVSCGS-GL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----FASGFVDA  240 (319)
Q Consensus       167 ~~~VLDiGcG~-G~-~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----~~~~~fD~  240 (319)
                      ..+|+=+|+|. |. ++..+.+.|.  +|+++|.+++.++.+++.          ++.++.+|..+..    ..-..+|+
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~--~V~~id~~~~~~~~~~~~----------~~~~~~gd~~~~~~l~~~~~~~~d~   73 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGK--KVLAVDKSKEKIELLEDE----------GFDAVIADPTDESFYRSLDLEGVSA   73 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC--CEEEEESCHHHHHHHHHT----------TCEEEECCTTCHHHHHHSCCTTCSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHC----------CCcEEECCCCCHHHHHhCCcccCCE
Confidence            45799999864 33 3344455566  999999999887766542          5678888887632    12346898


Q ss_pred             EEec
Q 020988          241 VHAG  244 (319)
Q Consensus       241 V~~~  244 (319)
                      |+..
T Consensus        74 vi~~   77 (141)
T 3llv_A           74 VLIT   77 (141)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            8774

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=87.56  E-value=4.6  Score=36.64  Aligned_cols=96  Identities=14%  Similarity=0.060  Sum_probs=60.3

Q ss_pred             HHhhccCCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-----C-
Q 020988          160 EYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----P-  232 (319)
Q Consensus       160 ~~l~~~~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-----p-  232 (319)
                      +.....++.+||-+|+|. |.++.++++.....+|+++|.+++.++.+++.-       . . .++...-.++     . 
T Consensus       176 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lG-------a-~-~vi~~~~~~~~~~i~~~  246 (370)
T 4ej6_A          176 DLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVG-------A-T-ATVDPSAGDVVEAIAGP  246 (370)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHT-------C-S-EEECTTSSCHHHHHHST
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcC-------C-C-EEECCCCcCHHHHHHhh
Confidence            344567899999999975 778888888753348999999999888887641       1 1 1221111110     0 


Q ss_pred             --CCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCee
Q 020988          233 --FASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSIC  270 (319)
Q Consensus       233 --~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~  270 (319)
                        ...+.+|+|+-.     ...+ ..+++..++++++|..
T Consensus       247 ~~~~~gg~Dvvid~-----~G~~-~~~~~~~~~l~~~G~v  280 (370)
T 4ej6_A          247 VGLVPGGVDVVIEC-----AGVA-ETVKQSTRLAKAGGTV  280 (370)
T ss_dssp             TSSSTTCEEEEEEC-----SCCH-HHHHHHHHHEEEEEEE
T ss_pred             hhccCCCCCEEEEC-----CCCH-HHHHHHHHHhccCCEE
Confidence              223479999763     3222 3467777777766543

>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}

Probab=87.49  E-value=0.39  Score=36.26  Aligned_cols=40  Identities=18%  Similarity=0.299  Sum_probs=27.6

Q ss_pred             cCeeeccCCCccccccCCCCCcccceecCceeeCccCCccccCCc
Q 020988           58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDN  102 (319)
Q Consensus        58 ~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~~~g  102 (319)
                      ..|.-||.|++-|....+.+.     ....+.|.+|+..+...+.
T Consensus         2 ~~m~FCp~Cgn~L~~~~~~~~-----~~~~~~C~~C~y~~~~~~~   41 (113)
T 3h0g_I            2 SNFQYCIECNNMLYPREDKVD-----RVLRLACRNCDYSEIAATS   41 (113)
T ss_dssp             -CCCCCSSSCCCCEECCCTTT-----CCCCEECSSSCCEECCSCS
T ss_pred             CcceeCcCCCCEeeEcccCCC-----CeeEEECCCCCCeEEcCCC
Confidence            346779999998876643110     1246899999999976654

>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4

Probab=87.37  E-value=0.26  Score=35.22  Aligned_cols=39  Identities=15%  Similarity=0.382  Sum_probs=23.3

Q ss_pred             cCeeeccCCCccccccCCCCCcccceecCceeeCccCCcccc
Q 020988           58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSS   99 (319)
Q Consensus        58 ~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~   99 (319)
                      ...|.||.|+..-...-.-.. ...  .+.+.|..||..|..
T Consensus        21 ~t~F~CPfCnh~~sV~vkidk-~~~--~g~l~C~~Cg~~~~~   59 (85)
T 1wii_A           21 ETQFTCPFCNHEKSCDVKMDR-ARN--TGVISCTVCLEEFQT   59 (85)
T ss_dssp             SSCCCCTTTCCSSCEEEEEET-TTT--EEEEEESSSCCEEEE
T ss_pred             CCeEcCCCCCCCCeEEEEEEc-cCC--EEEEEcccCCCeEEe
Confidence            368999999985211000000 011  267899999999944

>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}

Probab=86.90  E-value=0.46  Score=36.96  Aligned_cols=50  Identities=18%  Similarity=0.182  Sum_probs=27.9

Q ss_pred             cccccccccccCeeeccCCCccccccCCCCCcccceecCceeeCccCCccccCCc
Q 020988           48 SERNQTLELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDN  102 (319)
Q Consensus        48 ~~~~~~~~~~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~~~g  102 (319)
                      ++.-+......++--||.|++-|...+....     ....+.|++|+..+.....
T Consensus        12 ~~~~~~~~~~~~~~FCPeCgNmL~pked~~~-----~~l~~~CrtCgY~~~~~~~   61 (133)
T 3qt1_I           12 SGLVPRGSHMTTFRFCRDCNNMLYPREDKEN-----NRLLFECRTCSYVEEAGSP   61 (133)
T ss_dssp             ----------CCCCBCTTTCCBCBCCBCTTT-----CCBCCBCSSSCCBCCCSCS
T ss_pred             cccccCCccccCCeeCCCCCCEeeECccCCC-----ceeEEECCCCCCcEEcCCc
Confidence            3444445566778889999998866532100     1246899999998865544

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=86.75  E-value=1.5  Score=39.36  Aligned_cols=88  Identities=13%  Similarity=0.060  Sum_probs=55.4

Q ss_pred             hhccCCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccE
Q 020988          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA  240 (319)
Q Consensus       162 l~~~~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~  240 (319)
                      ....++.+||-+|+|. |.++.++++.. ..+|+++|.+++-++.+++.-       . . .++ .+...+  . +.+|+
T Consensus       172 ~~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lG-------a-~-~v~-~~~~~~--~-~~~D~  237 (348)
T 3two_A          172 SKVTKGTKVGVAGFGGLGSMAVKYAVAM-GAEVSVFARNEHKKQDALSMG-------V-K-HFY-TDPKQC--K-EELDF  237 (348)
T ss_dssp             TTCCTTCEEEEESCSHHHHHHHHHHHHT-TCEEEEECSSSTTHHHHHHTT-------C-S-EEE-SSGGGC--C-SCEEE
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHhcC-------C-C-eec-CCHHHH--h-cCCCE
Confidence            3567899999999975 77888887763 349999999999888887621       1 1 122 332222  2 27999


Q ss_pred             EEecccccCCCCHHHHHHHHHHhhcCCCe
Q 020988          241 VHAGAALHCWPSPSNAASVFSSSYSLLSI  269 (319)
Q Consensus       241 V~~~~vl~h~~d~~~~l~el~rvlk~g~~  269 (319)
                      |+-.-.-.      ..++...++++++|.
T Consensus       238 vid~~g~~------~~~~~~~~~l~~~G~  260 (348)
T 3two_A          238 IISTIPTH------YDLKDYLKLLTYNGD  260 (348)
T ss_dssp             EEECCCSC------CCHHHHHTTEEEEEE
T ss_pred             EEECCCcH------HHHHHHHHHHhcCCE
Confidence            97643321      124445556555443

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=86.15  E-value=9.3  Score=32.62  Aligned_cols=70  Identities=13%  Similarity=0.082  Sum_probs=49.8

Q ss_pred             CeEEEEcCCcChHHHHHHh----hCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 020988          168 GLLVDVSCGSGLFSRKFAK----SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (319)
Q Consensus       168 ~~VLDiGcG~G~~~~~l~~----~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (319)
                      ++||=.|+  |..+..+.+    .+.  +|++++.++...+....          .+++++.+|+.++.  -..+|+|+.
T Consensus         6 ~~ilVtGa--G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~----------~~~~~~~~D~~d~~--~~~~d~vi~   69 (286)
T 3ius_A            6 GTLLSFGH--GYTARVLSRALAPQGW--RIIGTSRNPDQMEAIRA----------SGAEPLLWPGEEPS--LDGVTHLLI   69 (286)
T ss_dssp             CEEEEETC--CHHHHHHHHHHGGGTC--EEEEEESCGGGHHHHHH----------TTEEEEESSSSCCC--CTTCCEEEE
T ss_pred             CcEEEECC--cHHHHHHHHHHHHCCC--EEEEEEcChhhhhhHhh----------CCCeEEEecccccc--cCCCCEEEE
Confidence            68999995  766655554    455  99999998865443322          37899999998876  467899998


Q ss_pred             cccccCCCCH
Q 020988          244 GAALHCWPSP  253 (319)
Q Consensus       244 ~~vl~h~~d~  253 (319)
                      ........++
T Consensus        70 ~a~~~~~~~~   79 (286)
T 3ius_A           70 STAPDSGGDP   79 (286)
T ss_dssp             CCCCBTTBCH
T ss_pred             CCCccccccH
Confidence            7765544443

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=86.05  E-value=1.7  Score=35.49  Aligned_cols=45  Identities=18%  Similarity=0.119  Sum_probs=32.1

Q ss_pred             hhccCCCeEEEEcC--CcChHHHHHHh-hCCCCeEEEEeCCHHHHHHHHH
Q 020988          162 FKSAQGGLLVDVSC--GSGLFSRKFAK-SGTYSGVVALDFSENMLRQCYD  208 (319)
Q Consensus       162 l~~~~~~~VLDiGc--G~G~~~~~l~~-~g~~~~v~gvD~s~~~l~~a~~  208 (319)
                      ....++.+||.+|+  |.|.....+++ .|.  +|+++|.+++.++.+++
T Consensus        34 ~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~--~V~~~~~~~~~~~~~~~   81 (198)
T 1pqw_A           34 GRLSPGERVLIHSATGGVGMAAVSIAKMIGA--RIYTTAGSDAKREMLSR   81 (198)
T ss_dssp             SCCCTTCEEEETTTTSHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHT
T ss_pred             hCCCCCCEEEEeeCCChHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHH
Confidence            34567899999995  44665555554 455  89999999987766643

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=86.03  E-value=5.5  Score=36.56  Aligned_cols=96  Identities=11%  Similarity=-0.001  Sum_probs=60.2

Q ss_pred             hccCCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC------CCC
Q 020988          163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------FAS  235 (319)
Q Consensus       163 ~~~~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------~~~  235 (319)
                      ...++.+||=+|+|. |.++.++++.....+|+++|.+++-++.+++.-.        . .++..+-.++.      ...
T Consensus       210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa--------~-~vi~~~~~~~~~~i~~~t~g  280 (404)
T 3ip1_A          210 GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGA--------D-HVIDPTKENFVEAVLDYTNG  280 (404)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTC--------S-EEECTTTSCHHHHHHHHTTT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC--------C-EEEcCCCCCHHHHHHHHhCC
Confidence            356789999999875 7788888877543489999999998888876411        1 12221111110      123


Q ss_pred             CCccEEEecccccCCCCHHHHHHHHHHhh----cCCCeeEE
Q 020988          236 GFVDAVHAGAALHCWPSPSNAASVFSSSY----SLLSICYL  272 (319)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~el~rvl----k~g~~~g~  272 (319)
                      ..+|+|+-     ....+...+..+.+++    +++|....
T Consensus       281 ~g~D~vid-----~~g~~~~~~~~~~~~l~~~~~~~G~iv~  316 (404)
T 3ip1_A          281 LGAKLFLE-----ATGVPQLVWPQIEEVIWRARGINATVAI  316 (404)
T ss_dssp             CCCSEEEE-----CSSCHHHHHHHHHHHHHHCSCCCCEEEE
T ss_pred             CCCCEEEE-----CCCCcHHHHHHHHHHHHhccCCCcEEEE
Confidence            46999964     3445544556666666    77765443

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=86.02  E-value=2.9  Score=37.56  Aligned_cols=97  Identities=12%  Similarity=0.002  Sum_probs=60.6

Q ss_pred             HHhhccCCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC------
Q 020988          160 EYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------  232 (319)
Q Consensus       160 ~~l~~~~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------  232 (319)
                      +.....++.+||-+|+|. |.++.++++.....+|+++|.+++.++.+++.-       . . .++..+-.++.      
T Consensus       160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lG-------a-~-~vi~~~~~~~~~~v~~~  230 (352)
T 3fpc_A          160 ELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYG-------A-T-DIINYKNGDIVEQILKA  230 (352)
T ss_dssp             HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHT-------C-C-EEECGGGSCHHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhC-------C-c-eEEcCCCcCHHHHHHHH
Confidence            445567899999999886 778888887743347999999999888887641       1 1 12221111110      


Q ss_pred             CCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeE
Q 020988          233 FASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICY  271 (319)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g  271 (319)
                      .....+|+|+-.-     ..+ ..+++..++++++|...
T Consensus       231 t~g~g~D~v~d~~-----g~~-~~~~~~~~~l~~~G~~v  263 (352)
T 3fpc_A          231 TDGKGVDKVVIAG-----GDV-HTFAQAVKMIKPGSDIG  263 (352)
T ss_dssp             TTTCCEEEEEECS-----SCT-THHHHHHHHEEEEEEEE
T ss_pred             cCCCCCCEEEECC-----CCh-HHHHHHHHHHhcCCEEE
Confidence            1234699997532     222 34666777777765443

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=86.01  E-value=1.4  Score=39.20  Aligned_cols=132  Identities=9%  Similarity=-0.015  Sum_probs=66.7

Q ss_pred             cCCCeEEEEcCCcChHHHHH----HhhCCCCe--EEEEeCCH--------H-HHHHHHHHHhhcCccCCC--CeEEEEcC
Q 020988          165 AQGGLLVDVSCGSGLFSRKF----AKSGTYSG--VVALDFSE--------N-MLRQCYDFIKQDNTILTS--NLALVRAD  227 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l----~~~g~~~~--v~gvD~s~--------~-~l~~a~~~~~~~~~~~~~--~i~~~~~d  227 (319)
                      .+.-+|||+|=|+|.+....    .+..+..+  ++.+|..+        . ..+...............  .+++..+|
T Consensus        95 ~~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GD  174 (308)
T 3vyw_A           95 RKVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGD  174 (308)
T ss_dssp             CSEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESC
T ss_pred             CCCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEech
Confidence            44568999999999865433    23355444  56666421        1 111122111111000112  34567788


Q ss_pred             CCC-CC-CCCCCccEEEecccccCCCCH----HHHHHHHHHhhcCCCeeEEEEeeccchhcccCCcccccccccccc
Q 020988          228 VCR-LP-FASGFVDAVHAGAALHCWPSP----SNAASVFSSSYSLLSICYLLQFRYTKIIELDNDNLILHPRRGQVN  298 (319)
Q Consensus       228 ~~~-lp-~~~~~fD~V~~~~vl~h~~d~----~~~l~el~rvlk~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (319)
                      +.+ ++ +.+..||+|+.-. +---.+|    ...++.+.++++++|.+..+- ....+...+..-.|.......++
T Consensus       175 a~~~l~~l~~~~~Da~flDg-FsP~kNPeLWs~e~f~~l~~~~~pgg~laTYt-aag~VRR~L~~aGF~V~k~~G~g  249 (308)
T 3vyw_A          175 ARKRIKEVENFKADAVFHDA-FSPYKNPELWTLDFLSLIKERIDEKGYWVSYS-SSLSVRKSLLTLGFKVGSSREIG  249 (308)
T ss_dssp             HHHHGGGCCSCCEEEEEECC-SCTTTSGGGGSHHHHHHHHTTEEEEEEEEESC-CCHHHHHHHHHTTCEEEEEECC-
T ss_pred             HHHHHhhhcccceeEEEeCC-CCcccCcccCCHHHHHHHHHHhCCCcEEEEEe-CcHHHHHHHHHCCCEEEecCCCC
Confidence            755 33 3445799999843 3333344    467888888887766443211 22233333444444444443333

>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...

Probab=85.90  E-value=0.53  Score=36.03  Aligned_cols=45  Identities=18%  Similarity=0.265  Sum_probs=26.3

Q ss_pred             cccccCeeeccCCCccc--cccCCCCCcccceecCceeeCccCCcccc
Q 020988           54 LELEGDLFSCPICYEPL--IRKGPTGLTLGAIYRSGFKCRKCDKTYSS   99 (319)
Q Consensus        54 ~~~~~~~l~CP~C~~~l--~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~   99 (319)
                      ++++.....||.|+..-  ... ....+.++-+...+.|.+|||.|..
T Consensus        66 ~t~p~t~~~Cp~C~~~~a~~~q-~q~rsade~~t~fy~C~~C~~~w~~  112 (122)
T 1twf_I           66 PTLPRSDRECPKCHSRENVFFQ-SQQRRKDTSMVLFFVCLSCSHIFTS  112 (122)
T ss_dssp             TTSCCCCCCCTTTCCCCEEEEE-CSSCCTTCCCCEEEEETTTCCEEEC
T ss_pred             ccccccCCCCCCCCCCEEEEEE-ecCccCCCCceEEEEeCCCCCEecc
Confidence            45555568899999831  111 1111222223356899999999843

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=85.77  E-value=1.8  Score=33.38  Aligned_cols=66  Identities=12%  Similarity=0.081  Sum_probs=45.7

Q ss_pred             CCeEEEEcCCc-Ch-HHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC----CCCCCccE
Q 020988          167 GGLLVDVSCGS-GL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----FASGFVDA  240 (319)
Q Consensus       167 ~~~VLDiGcG~-G~-~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----~~~~~fD~  240 (319)
                      ..+|+=+|+|. |. ++..+.+.+.  .|+++|.+++.++.+++          .++.++.+|..+..    ..-..+|+
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~--~v~vid~~~~~~~~~~~----------~g~~~i~gd~~~~~~l~~a~i~~ad~   74 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDI--PLVVIETSRTRVDELRE----------RGVRAVLGNAANEEIMQLAHLECAKW   74 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC--CEEEEESCHHHHHHHHH----------TTCEEEESCTTSHHHHHHTTGGGCSE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC--CEEEEECCHHHHHHHHH----------cCCCEEECCCCCHHHHHhcCcccCCE
Confidence            35789999875 44 3344445565  99999999998877765          26678889986632    11246888


Q ss_pred             EEec
Q 020988          241 VHAG  244 (319)
Q Consensus       241 V~~~  244 (319)
                      |++.
T Consensus        75 vi~~   78 (140)
T 3fwz_A           75 LILT   78 (140)
T ss_dssp             EEEC
T ss_pred             EEEE
Confidence            8764

>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A

Probab=85.28  E-value=0.34  Score=43.39  Aligned_cols=42  Identities=17%  Similarity=0.261  Sum_probs=24.7

Q ss_pred             cccCeeeccCCCccc-cccCCCCCcccceecCceeeCccCCcc
Q 020988           56 LEGDLFSCPICYEPL-IRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        56 ~~~~~l~CP~C~~~l-~~~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      .....+.||.|+..- ........+.+.-+...+.|.+|||.|
T Consensus       264 ~~~~~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~w  306 (309)
T 1pqv_S          264 SVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRW  306 (309)
T ss_pred             cCcccccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCce
Confidence            345688999999831 111111122223333578999999987

>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A

Probab=85.10  E-value=0.24  Score=34.66  Aligned_cols=35  Identities=23%  Similarity=0.693  Sum_probs=20.2

Q ss_pred             eeccCCCcc-cccc--------CCCCCcccceecCceeeCccCCcc
Q 020988           61 FSCPICYEP-LIRK--------GPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        61 l~CP~C~~~-l~~~--------~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      ..||+|++. |...        +...+....+  ..+.|+.||..|
T Consensus         3 m~Cp~Cg~~~l~~~~~~~~~~~~G~~~~I~~V--p~~~C~~CGE~~   46 (78)
T 3ga8_A            3 MKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGI--HGLYCVHCEESI   46 (78)
T ss_dssp             CBCTTTSSSBEEEEEEEEEEEETTEEEEEEEE--EEEEETTTCCEE
T ss_pred             eECCCCCCCeeEeEEEEEEEEECCEEEEEcCc--eeEECCCCCCEE
Confidence            579999963 4221        1111111222  467899999987

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=84.73  E-value=2.8  Score=33.62  Aligned_cols=67  Identities=13%  Similarity=0.167  Sum_probs=44.2

Q ss_pred             CCCeEEEEcCCc-Ch-HHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC----C-CCCC
Q 020988          166 QGGLLVDVSCGS-GL-FSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----F-ASGF  237 (319)
Q Consensus       166 ~~~~VLDiGcG~-G~-~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----~-~~~~  237 (319)
                      .+.+|+=+|+|. |. ++..+.+. +.  .|+++|.+++.++.+++.          ++.++.+|..+..    . .-..
T Consensus        38 ~~~~v~IiG~G~~G~~~a~~L~~~~g~--~V~vid~~~~~~~~~~~~----------g~~~~~gd~~~~~~l~~~~~~~~  105 (183)
T 3c85_A           38 GHAQVLILGMGRIGTGAYDELRARYGK--ISLGIEIREEAAQQHRSE----------GRNVISGDATDPDFWERILDTGH  105 (183)
T ss_dssp             TTCSEEEECCSHHHHHHHHHHHHHHCS--CEEEEESCHHHHHHHHHT----------TCCEEECCTTCHHHHHTBCSCCC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhccCC--eEEEEECCHHHHHHHHHC----------CCCEEEcCCCCHHHHHhccCCCC
Confidence            356899999874 43 34455555 66  899999999877665531          4556777775421    1 1346


Q ss_pred             ccEEEec
Q 020988          238 VDAVHAG  244 (319)
Q Consensus       238 fD~V~~~  244 (319)
                      +|+|+..
T Consensus       106 ad~vi~~  112 (183)
T 3c85_A          106 VKLVLLA  112 (183)
T ss_dssp             CCEEEEC
T ss_pred             CCEEEEe
Confidence            8988874

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=84.62  E-value=0.94  Score=32.11  Aligned_cols=40  Identities=25%  Similarity=0.526  Sum_probs=24.6

Q ss_pred             ccccCeeeccCCCccccc------cCCCCCcccceecCceeeCccCCcccc
Q 020988           55 ELEGDLFSCPICYEPLIR------KGPTGLTLGAIYRSGFKCRKCDKTYSS   99 (319)
Q Consensus        55 ~~~~~~l~CP~C~~~l~~------~~~~~~~~~~i~~~~~~C~~Cg~~f~~   99 (319)
                      ......+.|++|+..+..      .... ...    ...+.|+.|+..|..
T Consensus        23 ~~~~~~h~C~~Cgk~F~~~~~L~~H~~~-H~~----~k~~~C~~C~k~F~~   68 (85)
T 2lv2_A           23 SASAECHLCPVCGESFASKGAQERHLRL-LHA----AQVFPCKYCPATFYS   68 (85)
T ss_dssp             CCCCTTEECTTSCCEESSHHHHHHHHHT-TSC----SSSEECTTSSCEESS
T ss_pred             CCCCCCEECCCCCCCcCcHHHHhhhhhh-ccC----CCccCCCCCCCEeCC
Confidence            334566899999984422      1100 000    146899999999954

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=84.51  E-value=9.9  Score=34.08  Aligned_cols=101  Identities=11%  Similarity=0.048  Sum_probs=64.1

Q ss_pred             HHhhccCCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCC--CCC----
Q 020988          160 EYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC--RLP----  232 (319)
Q Consensus       160 ~~l~~~~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~--~lp----  232 (319)
                      +.....++.+||-+|+|. |.++.++++......|+++|.+++-++.+++. ..      .-+.+...+..  ++.    
T Consensus       173 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~------~~~~~~~~~~~~~~~~~~v~  245 (363)
T 3m6i_A          173 QRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CP------EVVTHKVERLSAEESAKKIV  245 (363)
T ss_dssp             HHHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CT------TCEEEECCSCCHHHHHHHHH
T ss_pred             HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-ch------hcccccccccchHHHHHHHH
Confidence            344567899999999975 78888888774323499999999999998875 21      12222211110  000    


Q ss_pred             --CCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988          233 --FASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       233 --~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~  273 (319)
                        .....+|+|+-.     ...+ ..++...++++++|..-.+
T Consensus       246 ~~t~g~g~Dvvid~-----~g~~-~~~~~~~~~l~~~G~iv~~  282 (363)
T 3m6i_A          246 ESFGGIEPAVALEC-----TGVE-SSIAAAIWAVKFGGKVFVI  282 (363)
T ss_dssp             HHTSSCCCSEEEEC-----SCCH-HHHHHHHHHSCTTCEEEEC
T ss_pred             HHhCCCCCCEEEEC-----CCCh-HHHHHHHHHhcCCCEEEEE
Confidence              123579999763     3232 3467788888888765443

>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=83.90  E-value=0.52  Score=30.12  Aligned_cols=26  Identities=27%  Similarity=0.484  Sum_probs=20.2

Q ss_pred             CeeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      +...||.|+..+.             -+.+.|..||+..
T Consensus        13 ~k~iCpkC~a~~~-------------~gaw~CrKCG~~~   38 (51)
T 3j21_g           13 KKYVCLRCGATNP-------------WGAKKCRKCGYKR   38 (51)
T ss_dssp             SEEECTTTCCEEC-------------TTCSSCSSSSSCC
T ss_pred             CCccCCCCCCcCC-------------CCceecCCCCCcc
Confidence            5678999999732             1678999999874

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=83.30  E-value=4.1  Score=36.65  Aligned_cols=89  Identities=12%  Similarity=0.100  Sum_probs=55.0

Q ss_pred             hhccCC------CeEEEEcCCc-ChHH-HHHH-hhCCCCe-EEEEeCCHH---HHHHHHHHHhhcCccCCCCeEEEEcCC
Q 020988          162 FKSAQG------GLLVDVSCGS-GLFS-RKFA-KSGTYSG-VVALDFSEN---MLRQCYDFIKQDNTILTSNLALVRADV  228 (319)
Q Consensus       162 l~~~~~------~~VLDiGcG~-G~~~-~~l~-~~g~~~~-v~gvD~s~~---~l~~a~~~~~~~~~~~~~~i~~~~~d~  228 (319)
                      ....++      .+||-+|+|. |.++ .+++ +.. ..+ |+++|.+++   -++.+++.          +.+.+  |.
T Consensus       162 ~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~-Ga~~Vi~~~~~~~~~~~~~~~~~l----------Ga~~v--~~  228 (357)
T 2b5w_A          162 AYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDK-GYENLYCLGRRDRPDPTIDIIEEL----------DATYV--DS  228 (357)
T ss_dssp             HHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTT-CCCEEEEEECCCSSCHHHHHHHHT----------TCEEE--ET
T ss_pred             cCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHc-CCcEEEEEeCCcccHHHHHHHHHc----------CCccc--CC
Confidence            344567      8999999864 7777 7777 653 235 999999987   77777642          23333  33


Q ss_pred             CCCCCC-----CCCccEEEecccccCCCCHHHHHHHHHHhhcCCCe
Q 020988          229 CRLPFA-----SGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSI  269 (319)
Q Consensus       229 ~~lp~~-----~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~  269 (319)
                      .+..+.     .+.+|+|+-.     ...+ ..+++..++++++|.
T Consensus       229 ~~~~~~~i~~~~gg~Dvvid~-----~g~~-~~~~~~~~~l~~~G~  268 (357)
T 2b5w_A          229 RQTPVEDVPDVYEQMDFIYEA-----TGFP-KHAIQSVQALAPNGV  268 (357)
T ss_dssp             TTSCGGGHHHHSCCEEEEEEC-----SCCH-HHHHHHHHHEEEEEE
T ss_pred             CccCHHHHHHhCCCCCEEEEC-----CCCh-HHHHHHHHHHhcCCE
Confidence            221111     1368998653     3332 346677777776543

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=83.03  E-value=0.84  Score=31.19  Aligned_cols=18  Identities=22%  Similarity=0.349  Sum_probs=12.7

Q ss_pred             cccccCeeeccCCCcccc
Q 020988           54 LELEGDLFSCPICYEPLI   71 (319)
Q Consensus        54 ~~~~~~~l~CP~C~~~l~   71 (319)
                      .....+.+.||+|...+.
T Consensus         9 ~~~~~~~~~C~IC~~~~~   26 (74)
T 2yur_A            9 DDPIPDELLCLICKDIMT   26 (74)
T ss_dssp             CCCSCGGGSCSSSCCCCT
T ss_pred             cccCCCCCCCcCCChHHh
Confidence            334456789999988654

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=82.94  E-value=1.6  Score=34.86  Aligned_cols=100  Identities=14%  Similarity=0.103  Sum_probs=58.0

Q ss_pred             CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-CC----CCCCccE
Q 020988          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PF----ASGFVDA  240 (319)
Q Consensus       166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~----~~~~fD~  240 (319)
                      ..+.|||+|=|+|+.-..+.+..|..+++.+|-.-..-          .....+.-.++.+|+.+. |.    -....-+
T Consensus        40 ~~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~h----------p~~~P~~e~~ilGdi~~tL~~~~~r~g~~a~L  109 (174)
T 3iht_A           40 LSGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVASH----------PDSTPPEAQLILGDIRETLPATLERFGATASL  109 (174)
T ss_dssp             CCSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCCC----------GGGCCCGGGEEESCHHHHHHHHHHHHCSCEEE
T ss_pred             CCCceEEecCCCChhHHHHHHhCCCCcEEEEEeeeccC----------CCCCCchHheecccHHHHHHHHHHhcCCceEE
Confidence            46789999999999999999999999999999632110          001233445788887652 32    1334444


Q ss_pred             EEecccccCCCCHHHH-HHHHHH-hhcCCCeeEEEEee
Q 020988          241 VHAGAALHCWPSPSNA-ASVFSS-SYSLLSICYLLQFR  276 (319)
Q Consensus       241 V~~~~vl~h~~d~~~~-l~el~r-vlk~g~~~g~~~~~  276 (319)
                      +++-...++ ++.+.+ .+.+.. +...+.++|+++-.
T Consensus       110 aHaD~G~g~-~~~d~a~a~~lsplI~~~la~GGi~vS~  146 (174)
T 3iht_A          110 VHADLGGHN-REKNDRFARLISPLIEPHLAQGGLMVSS  146 (174)
T ss_dssp             EEECCCCSC-HHHHHHHHHHHHHHHGGGEEEEEEEEES
T ss_pred             EEeecCCCC-cchhHHHHHhhhHHHHHHhcCCcEEEeC
Confidence            544333332 222222 222322 33345666766653

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=82.51  E-value=4.3  Score=36.71  Aligned_cols=91  Identities=15%  Similarity=0.100  Sum_probs=58.9

Q ss_pred             CCCeEEEEc-CC-cChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC-C-----CCCCCC
Q 020988          166 QGGLLVDVS-CG-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-L-----PFASGF  237 (319)
Q Consensus       166 ~~~~VLDiG-cG-~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~-l-----p~~~~~  237 (319)
                      ++.+||=+| +| .|.++.++++.....+|+++|.+++-++.+++.          +.+.+. |..+ +     ....+.
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~l----------Gad~vi-~~~~~~~~~v~~~~~~g  239 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSL----------GAHHVI-DHSKPLAAEVAALGLGA  239 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHT----------TCSEEE-CTTSCHHHHHHTTCSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHc----------CCCEEE-eCCCCHHHHHHHhcCCC
Confidence            678999998 55 488888888862235999999999888888652          111111 1111 1     122357


Q ss_pred             ccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988          238 VDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       238 fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~  273 (319)
                      +|+|+-.     . .....+++..++++++|....+
T Consensus       240 ~Dvvid~-----~-g~~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          240 PAFVFST-----T-HTDKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             EEEEEEC-----S-CHHHHHHHHHHHSCTTCEEEEC
T ss_pred             ceEEEEC-----C-CchhhHHHHHHHhcCCCEEEEE
Confidence            9988753     2 2234577888888888765543

>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}

Probab=82.49  E-value=0.94  Score=37.94  Aligned_cols=39  Identities=21%  Similarity=0.528  Sum_probs=25.7

Q ss_pred             CeeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      =.++||.|+......+........+....+.|++|+..+
T Consensus        21 l~l~Cp~C~~~~~F~gv~~~~~~~~~~sg~~C~~C~~~~   59 (206)
T 3flo_B           21 LELSCPSCDKRFPFGGIVSSNYYRVSYNGLQCKHCEQLF   59 (206)
T ss_dssp             EEEECTTTCCEEEECSSSCCSSEEEETTEEEETTTCCBC
T ss_pred             eEEECCCCCCccCCCCcccCCCcccccccccCCCCCCcC
Confidence            368899999865554432222222555788999999875

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=81.89  E-value=0.81  Score=31.95  Aligned_cols=16  Identities=44%  Similarity=0.951  Sum_probs=12.1

Q ss_pred             cCeeeccCCCcccccc
Q 020988           58 GDLFSCPICYEPLIRK   73 (319)
Q Consensus        58 ~~~l~CP~C~~~l~~~   73 (319)
                      .+.+.||+|-.++...
T Consensus         9 ~~~~~CpICle~~~~~   24 (78)
T 1e4u_A            9 EDPVECPLCMEPLEID   24 (78)
T ss_dssp             CCCCBCTTTCCBCCTT
T ss_pred             ccCCcCCccCccCccc
Confidence            4567899999977543

>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}

Probab=81.86  E-value=0.28  Score=38.22  Aligned_cols=46  Identities=15%  Similarity=0.187  Sum_probs=0.0

Q ss_pred             ccccccCeeeccCCCcccc-ccCCCCCcccceecCceeeCccCCccc
Q 020988           53 TLELEGDLFSCPICYEPLI-RKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (319)
Q Consensus        53 ~~~~~~~~l~CP~C~~~l~-~~~~~~~~~~~i~~~~~~C~~Cg~~f~   98 (319)
                      +++++..-..||.|+..-. .......+.++-+...+.|.+||+.|.
T Consensus        85 dptlp~t~~~CpkCg~~~a~f~q~Q~RsaDE~mT~fy~C~~C~~~w~  131 (133)
T 3qt1_I           85 DPTLPRSDRECPKCHSRENVFFQLQIRSADEPMTTFYKCVNCGHRWK  131 (133)
T ss_dssp             -----------------------------------------------
T ss_pred             cccCCcccCCCCCCCCceEEEEEEeeecCCCCCcEEEEcCCCCCEeC
Confidence            4566666789999997311 111111122223345789999999873

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=81.41  E-value=4.2  Score=36.10  Aligned_cols=44  Identities=18%  Similarity=0.127  Sum_probs=33.4

Q ss_pred             hhccCCCeEEEEcC--CcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHH
Q 020988          162 FKSAQGGLLVDVSC--GSGLFSRKFAKS-GTYSGVVALDFSENMLRQCY  207 (319)
Q Consensus       162 l~~~~~~~VLDiGc--G~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~  207 (319)
                      ....++.+||-.|+  |.|..+..+++. |.  +|+++|.+++.++.++
T Consensus       141 ~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~--~V~~~~~~~~~~~~~~  187 (333)
T 1v3u_A          141 CGVKGGETVLVSAAAGAVGSVVGQIAKLKGC--KVVGAAGSDEKIAYLK  187 (333)
T ss_dssp             SCCCSSCEEEEESTTBHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHH
T ss_pred             hCCCCCCEEEEecCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHH
Confidence            34567899999998  456666666654 44  9999999998887773

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=80.27  E-value=9.4  Score=31.63  Aligned_cols=78  Identities=18%  Similarity=0.129  Sum_probs=49.0

Q ss_pred             cCCCeEEEEcCCc--C-hHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCe-EEEEcCCC-CCCCCCCCcc
Q 020988          165 AQGGLLVDVSCGS--G-LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNL-ALVRADVC-RLPFASGFVD  239 (319)
Q Consensus       165 ~~~~~VLDiGcG~--G-~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i-~~~~~d~~-~lp~~~~~fD  239 (319)
                      ..+++||=.|+..  | .++..+++.|.  +|++++.++..++....          .++ .++.+|+. .+.-.-+..|
T Consensus        19 l~~~~ilVtGatG~iG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~----------~~~~~~~~~Dl~~~~~~~~~~~D   86 (236)
T 3e8x_A           19 FQGMRVLVVGANGKVARYLLSELKNKGH--EPVAMVRNEEQGPELRE----------RGASDIVVANLEEDFSHAFASID   86 (236)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHH----------TTCSEEEECCTTSCCGGGGTTCS
T ss_pred             cCCCeEEEECCCChHHHHHHHHHHhCCC--eEEEEECChHHHHHHHh----------CCCceEEEcccHHHHHHHHcCCC
Confidence            3578899888643  2 24455556666  99999998876544332          267 88999986 2211124689


Q ss_pred             EEEecccccCCCCHH
Q 020988          240 AVHAGAALHCWPSPS  254 (319)
Q Consensus       240 ~V~~~~vl~h~~d~~  254 (319)
                      +|+.........++.
T Consensus        87 ~vi~~ag~~~~~~~~  101 (236)
T 3e8x_A           87 AVVFAAGSGPHTGAD  101 (236)
T ss_dssp             EEEECCCCCTTSCHH
T ss_pred             EEEECCCCCCCCCcc
Confidence            999877655444444

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=80.18  E-value=7.9  Score=33.17  Aligned_cols=80  Identities=20%  Similarity=0.269  Sum_probs=55.1

Q ss_pred             cCCCeEEEEcCCcC---hHHHHHHhhCCCCeEEEEeCC------------HHHHHHHHHHHhhcCccCCCCeEEEEcCCC
Q 020988          165 AQGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFS------------ENMLRQCYDFIKQDNTILTSNLALVRADVC  229 (319)
Q Consensus       165 ~~~~~VLDiGcG~G---~~~~~l~~~g~~~~v~gvD~s------------~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~  229 (319)
                      ..++++|=.|++.|   .++..+++.|.  +|+.+|.+            .+.++...+.+...    ..++.++.+|+.
T Consensus        11 l~gk~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~   84 (278)
T 3sx2_A           11 LTGKVAFITGAARGQGRAHAVRLAADGA--DIIAVDLCDQIASVPYPLATPEELAATVKLVEDI----GSRIVARQADVR   84 (278)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHH----TCCEEEEECCTT
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC--eEEEEecccccccccccccchHHHHHHHHHHHhc----CCeEEEEeCCCC
Confidence            35678999998765   35666777777  89999987            66666655555443    357899999997


Q ss_pred             CCC-----CC-----CCCccEEEecccccCC
Q 020988          230 RLP-----FA-----SGFVDAVHAGAALHCW  250 (319)
Q Consensus       230 ~lp-----~~-----~~~fD~V~~~~vl~h~  250 (319)
                      +..     +.     -+..|+++.+..+...
T Consensus        85 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~  115 (278)
T 3sx2_A           85 DRESLSAALQAGLDELGRLDIVVANAGIAPM  115 (278)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCCCCC
Confidence            743     10     1378999988765543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	319
d1p91a_	268	c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher	5e-13
d1l3ia_	186	c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi	1e-07
d1nw3a_	328	c.66.1.31 (A:) Catalytic, N-terminal domain of his	5e-06
d1ri5a_	252	c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf	6e-05
d2fyta1	311	c.66.1.6 (A:238-548) Protein arginine N-methyltran	8e-05
d1oria_	316	c.66.1.6 (A:) Protein arginine N-methyltransferase	1e-04
d1vl5a_	231	c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill	0.001
d1jqea_	280	c.66.1.19 (A:) Histamine methyltransferase {Human	0.001
d1nt2a_	209	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch	0.001
d2g72a1	263	c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr	0.003
d1xxla_	234	c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus	0.003
d1xvaa_	292	c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra	0.003
d1g8sa_	230	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth	0.004

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

 Score = 65.7 bits (159), Expect = 5e-13
 Identities = 37/189 (19%), Positives = 72/189 (38%), Gaps = 33/189 (17%)

Query: 61  FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKP 120
           FSCP+C++PL R+  +           + C +  +   +K+ Y++L  +   +       
Sbjct: 2   FSCPLCHQPLSREKNS-----------YICPQRHQFDMAKEGYVNLLPVQHKRSRDPGD- 49

Query: 121 ASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQ-EYFKSAQGGLLVDVSCGSGL 179
            S E+ ++           R+ F  +G   P  +  +AQ       +   ++D+ CG G 
Sbjct: 50  -SAEMMQA-----------RRAFLDAGHYQPLRDAIVAQLRERLDDKATAVLDIGCGEGY 97

Query: 180 FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVD 239
           ++  FA +        LD S+  ++       Q    +            RLPF+   +D
Sbjct: 98  YTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVA--------SSHRLPFSDTSMD 149

Query: 240 AVHAGAALH 248
           A+    A  
Sbjct: 150 AIIRIYAPC 158

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 48.7 bits (115), Expect = 1e-07
 Identities = 20/123 (16%), Positives = 38/123 (30%), Gaps = 19/123 (15%)

Query: 151 PDEEF---------------KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVA 195
           PD+EF                +     +  +  + VDV CG+G  + + A       V A
Sbjct: 3   PDDEFIKNPSVPGPTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRR--VYA 60

Query: 196 LDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSN 255
           +D +   +      +++    L  N+ L+  D          +D    G +         
Sbjct: 61  IDRNPEAISTTEMNLQRHG--LGDNVTLMEGDAPEALCKIPDIDIAVVGGSGGELQEILR 118

Query: 256 AAS 258
              
Sbjct: 119 IIK 121

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 5e-06
 Identities = 12/134 (8%), Positives = 32/134 (23%), Gaps = 14/134 (10%)

Query: 139 WRQNFNRSGFPGPDE-----EFKMAQEYFKSAQ---GGLLVDVSCGSGLFSRKFAKSGTY 190
                  +  P   E      F +  +     +     L VD+  G G    + A +   
Sbjct: 116 TDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNC 175

Query: 191 SGVVALDFSENMLRQCYDFIKQDNTILT------SNLALVRADVCRLPFASGFVDAVHAG 244
                ++ ++   +      ++    +       +   L R D     +     +     
Sbjct: 176 KHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIF 235

Query: 245 AALHCWPSPSNAAS 258
                +    +   
Sbjct: 236 VNNFAFGPEVDHQL 249

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

 Score = 41.5 bits (96), Expect = 6e-05
 Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 4/93 (4%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
           +G  ++D+ CG G    K+ ++G       +D +E  +       +  N      +    
Sbjct: 24  RGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARV--RARNMKRRFKVFFRA 80

Query: 226 ADVCRLPFASGFV-DAVHAGAALHCWPSPSNAA 257
            D        G   D + +  + H   S S + 
Sbjct: 81  QDSYGRHMDLGKEFDVISSQFSFHYAFSTSESL 113

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (96), Expect = 8e-05
 Identities = 18/90 (20%), Positives = 37/90 (41%), Gaps = 4/90 (4%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
           +  +++DV CG+G+ S   AK+G    V+ +D SE + +            L   + L++
Sbjct: 35  KDKVVLDVGCGTGILSMFAAKAG-AKKVLGVDQSEILYQAMDIIRLNK---LEDTITLIK 90

Query: 226 ADVCRLPFASGFVDAVHAGAALHCWPSPSN 255
             +  +      VD + +    +     S 
Sbjct: 91  GKIEEVHLPVEKVDVIISEWMGYFLLFESM 120

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.5 bits (94), Expect = 1e-04
 Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 4/90 (4%)

Query: 171 VDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230
           +DV  G+G+     AK+G    V+ ++ S                 L   + +++  V  
Sbjct: 38  LDVGSGTGILCMFAAKAGARK-VIGIECSSISDYAVKIVKANK---LDHVVTIIKGKVEE 93

Query: 231 LPFASGFVDAVHAGAALHCWPSPSNAASVF 260
           +      VD + +    +C    S   +V 
Sbjct: 94  VELPVEKVDIIISEWMGYCLFYESMLNTVL 123

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 170 LVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDF 209
           ++DV+ G G  +  FA       VVA D +E++L+    F
Sbjct: 19  VLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAF 56

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 16/146 (10%), Positives = 38/146 (26%), Gaps = 30/146 (20%)

Query: 135 YERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLL------------VDVSCGSGLFSR 182
           Y   +R+  N S       E +  QE+      G++            + +  G+G    
Sbjct: 3   YVESFRRFLNHST------EHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDL 56

Query: 183 KFAK------SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----- 231
           +          G       ++ S   + +  + + + + +     A  +           
Sbjct: 57  QILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRML 116

Query: 232 -PFASGFVDAVHAGAALHCWPSPSNA 256
                   D +H    L+        
Sbjct: 117 EKKELQKWDFIHMIQMLYYVKDIPAT 142

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 37.4 bits (86), Expect = 0.001
 Identities = 22/140 (15%), Positives = 46/140 (32%), Gaps = 23/140 (16%)

Query: 127 RSPFVSFLYER---GWRQ-NFNRSGFPGPDEEFKMAQEYFKSAQ-----GGLLVDVSCGS 177
           +S + S   E+   G+R+    RS         K+A    K  +        ++ +   S
Sbjct: 17  KSKYGSHYGEKVFDGYREWVPWRS---------KLAAMILKGHRLKLRGDERVLYLGAAS 67

Query: 178 GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF 237
           G      A       + A+++S     +  + +++ N     N+  +  D  +    SG 
Sbjct: 68  GTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN-----NIIPLLFDASKPWKYSGI 122

Query: 238 VDAVHAGAALHCWPSPSNAA 257
           V+ V          +     
Sbjct: 123 VEKVDLIYQDIAQKNQIEIL 142

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (83), Expect = 0.003
 Identities = 18/150 (12%), Positives = 45/150 (30%), Gaps = 37/150 (24%)

Query: 154 EFKMAQEYFKSAQ--GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIK 211
           + +   + F + +  G  L+D+  G  ++    A    +  +   DF E   ++   +++
Sbjct: 40  KLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSA-CSHFEDITMTDFLEVNRQELGRWLQ 98

Query: 212 QDN---------------------------TILTSNLALVRADVCR------LPFASGFV 238
           ++                             +      ++  DV +         A    
Sbjct: 99  EEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPA 158

Query: 239 DAVHAGAALHC-WPSPSNAASVFSSSYSLL 267
           DA+ +   L    P  ++         +LL
Sbjct: 159 DALVSAFCLEAVSPDLASFQRALDHITTLL 188

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 36.5 bits (83), Expect = 0.003
 Identities = 13/84 (15%), Positives = 29/84 (34%), Gaps = 5/84 (5%)

Query: 170 LVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC 229
           ++D+  G+G  +  F+        + +D ++ M+     F ++            +    
Sbjct: 20  VLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGVENVRF---QQGTAE 74

Query: 230 RLPFASGFVDAVHAGAALHCWPSP 253
            LPF     D +    A H +   
Sbjct: 75  SLPFPDDSFDIITCRYAAHHFSDV 98

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.5 bits (83), Expect = 0.003
 Identities = 18/123 (14%), Positives = 38/123 (30%), Gaps = 7/123 (5%)

Query: 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFI 210
            E         +      ++DV+CG+G+ S    + G + + V A D       +     
Sbjct: 42  AEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNR 101

Query: 211 KQDNTILTSNLALVRADV--CRLPFASGFVDAVHAGAALHCWPSP----SNAASVFSSSY 264
           +++       +           +P   GF   +  G +    P      S       +  
Sbjct: 102 RKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIA 161

Query: 265 SLL 267
           S++
Sbjct: 162 SMV 164

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 35.9 bits (82), Expect = 0.004
 Identities = 8/98 (8%), Positives = 28/98 (28%), Gaps = 4/98 (4%)

Query: 160 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTS 219
           +     +   ++ +   +G      A       V A++++  ++R+  D   +   I+  
Sbjct: 68  KVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIP- 126

Query: 220 NLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAA 257
              ++        +A+           +          
Sbjct: 127 ---ILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILI 161

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	319
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.94
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.87
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.87
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.83
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.81
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.8
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.76
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.76
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.75
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.75
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.74
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.74
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.73
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.7
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.7
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.69
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.67
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.67
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.67
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.66
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.66
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.66
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.65
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.64
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.62
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.6
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.59
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.57
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.57
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.57
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.56
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.56
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.55
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.54
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.51
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.49
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.47
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.47
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.47
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.47
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.46
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.45
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.43
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.43
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.37
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.36
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.33
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.3
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.28
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.21
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.15
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.15
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.14
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.13
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.09
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.07
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	98.99
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	98.96
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	98.95
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.94
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.94
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	98.85
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.85
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	98.85
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.82
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	98.76
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.76
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.76
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.7
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	98.7
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.67
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.64
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	98.64
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	98.62
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.49
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.46
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.41
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.36
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.36
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.35
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.35
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.33
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.31
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.25
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.22
d2jnya1	59	Uncharacterized protein Cgl1405/cg1592 {Corynebact	98.19
d2pk7a1	59	Uncharacterized protein PFL1779 {Pseudomonas fluor	98.13
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.13
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.13
d2hf1a1	59	Hypothetical protein CV3345 {Chromobacterium viola	98.1
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.08
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.04
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.02
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.01
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.0
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	97.96
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	97.82
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	97.81
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	97.78
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.65
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	97.56
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	97.52
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.31
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.14
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	96.94
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	96.55
d2akla2	38	Hypothetical protein PA0128, N-terminal domain {Ps	96.4
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	96.26
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	95.82
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	95.76
d1tfia_	50	Transcriptional factor SII, C-terminal domain {Hum	95.22
d1twfi2	72	RBP9 subunit of RNA polymerase II {Baker's yeast (	95.19
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	95.08
d1qypa_	57	RBP9 subunit of RNA polymerase II {Archaeon Thermo	95.08
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	95.08
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	94.46
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	94.25
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	94.15
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	94.05
d1pfva3	35	Methionyl-tRNA synthetase (MetRS), Zn-domain {Esch	93.25
d1rqga3	35	Methionyl-tRNA synthetase (MetRS), Zn-domain {Pyro	93.01
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	92.91
d1vqoz1	73	Ribosomal protein L37ae {Archaeon Haloarcula maris	92.82
d1jj2y_	73	Ribosomal protein L37ae {Archaeon Haloarcula maris	92.8
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	92.55
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	92.21
d2jnea1	71	Hypothetical protein YfgJ {Escherichia coli [TaxId	91.69
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	91.69
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	91.67
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	91.61
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	91.42
d1dl6a_	58	Transcription initiation factor TFIIB, N-terminal	91.37
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	90.35
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	89.99
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	89.96
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	89.94
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	89.61
d1rjda_	328	Leucine carboxy methyltransferase Ppm1 {Baker's ye	89.54
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	88.94
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	88.69
d1pfta_	50	Transcription initiation factor TFIIB, N-terminal	88.68
d2ct7a1	73	Ring finger protein 31 {Human (Homo sapiens) [TaxI	88.38
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	88.31
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	87.97
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	87.86
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	87.85
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	86.5
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	86.06
d2f9yb1	263	Acetyl-coenzyme A carboxylase carboxyl transferase	85.74
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	85.43
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	85.02
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	84.45
d1twfl_	46	RBP12 subunit of RNA polymerase II {Baker's yeast	84.42
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	84.19
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	84.08
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	83.95
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	83.66
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	83.19
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	82.85
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	82.76
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	82.66
d1wiia_	85	Hypothetical UPF0222 protein MGC4549 {Mouse (Mus m	82.32
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	81.91
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	80.66
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	80.23

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=8.5e-26  Score=200.67  Aligned_cols=178  Identities=21%  Similarity=0.357  Sum_probs=130.9

Q ss_pred             eeccCCCccccccCCCCCcccceecCceeeCccCCcc-ccCCceeeeccccCccCcCCCchhhhhhhcCchhhHHhHHhH
Q 020988           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY-SSKDNYLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGW  139 (319)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f-~~~~g~~~~~~~~~~~~y~~~~~~~~~~~~~~~~s~~~~~~w  139 (319)
                      |+||+|+++|...+           +.+.|.+|. .| ..++||+++++.+....|+...  .++++..           
T Consensus         2 f~CP~C~~~L~~~~-----------~~l~C~~~h-~fd~~~~Gy~~ll~~~~~~~~~~~~--~~~~~~a-----------   56 (268)
T d1p91a_           2 FSCPLCHQPLSREK-----------NSYICPQRH-QFDMAKEGYVNLLPVQHKRSRDPGD--SAEMMQA-----------   56 (268)
T ss_dssp             BBCTTTCCBCEEET-----------TEEECTTCC-EEEBCTTSCEECSCSSSSCSCCCSS--SHHHHHH-----------
T ss_pred             ccCCCCChhhhcCC-----------CeEECCCCC-ccccccCceEecccccccccCCCCC--CHHHHHH-----------
Confidence            79999999987654           568999965 56 6678999998766554433211  1223221           


Q ss_pred             HHhhhhCCCCCcHHH--HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccC
Q 020988          140 RQNFNRSGFPGPDEE--FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTIL  217 (319)
Q Consensus       140 ~~~~~~~~~~~~~~~--~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~  217 (319)
                      ++.+...+++.+...  ...+...+ ..++.+|||||||+|.++..+++.++..+++|+|+|+.|++.|+++.       
T Consensus        57 r~~~l~~g~~~~l~~~~~~~l~~~~-~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~-------  128 (268)
T d1p91a_          57 RRAFLDAGHYQPLRDAIVAQLRERL-DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-------  128 (268)
T ss_dssp             HHHHHTTTTTHHHHHHHHHHHHHHS-CTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-------
T ss_pred             HHHHHHcCchHHHHHHHHHHHHHhc-CCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc-------
Confidence            233333343322111  22333333 35678999999999999999999988889999999999999998863       


Q ss_pred             CCCeEEEEcCCCCCCCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEeeccc
Q 020988          218 TSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFRYTK  279 (319)
Q Consensus       218 ~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~~~~  279 (319)
                       +++.++++|+.++|+++++||+|++.++++|       ++|+.|+|||+|.+.+..+....
T Consensus       129 -~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~-------~~e~~rvLkpgG~l~~~~p~~~~  182 (268)
T d1p91a_         129 -PQVTFCVASSHRLPFSDTSMDAIIRIYAPCK-------AEELARVVKPGGWVITATPGPRH  182 (268)
T ss_dssp             -TTSEEEECCTTSCSBCTTCEEEEEEESCCCC-------HHHHHHHEEEEEEEEEEEECTTT
T ss_pred             -ccccceeeehhhccCCCCCEEEEeecCCHHH-------HHHHHHHhCCCcEEEEEeeCCcc
Confidence             5789999999999999999999999998887       47899999988766666554433

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.87  E-value=7.4e-22  Score=171.21  Aligned_cols=116  Identities=14%  Similarity=0.206  Sum_probs=105.7

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (319)
                      ...+.+.+..+++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|++++...   ...++.++++|++++|++
T Consensus         5 ~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~~--~v~gvD~S~~~l~~A~~~~~~~---~~~~~~~~~~d~~~~~~~   79 (234)
T d1xxla_           5 LGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEK---GVENVRFQQGTAESLPFP   79 (234)
T ss_dssp             HHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHH---TCCSEEEEECBTTBCCSC
T ss_pred             HHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhCC--eEEEEeCChhhhhhhhhhhccc---cccccccccccccccccc
Confidence            35677788889999999999999999999999876  9999999999999999998775   346899999999999999


Q ss_pred             CCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          235 SGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      +++||+|++.++++|++|+..+++++.|+|||+|...+..+
T Consensus        80 ~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~  120 (234)
T d1xxla_          80 DDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDH  120 (234)
T ss_dssp             TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEc
Confidence            99999999999999999999999999999999988776654

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.87  E-value=1.3e-21  Score=168.81  Aligned_cols=115  Identities=22%  Similarity=0.281  Sum_probs=103.5

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (319)
                      ..+.+.+..+++.+|||||||+|.++..+++.+.  +|+|+|+|++|++.|++++...   ..+++.++++|++++|+++
T Consensus         5 ~~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~i~~A~~~~~~~---~~~~i~~~~~d~~~l~~~~   79 (231)
T d1vl5a_           5 AKLMQIAALKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGN---GHQQVEYVQGDAEQMPFTD   79 (231)
T ss_dssp             HHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHT---TCCSEEEEECCC-CCCSCT
T ss_pred             HHHHHhcCCCCcCEEEEecccCcHHHHHHHHhCC--EEEEEECCHHHHhhhhhccccc---ccccccccccccccccccc
Confidence            4566677888899999999999999999999987  9999999999999999988775   3578999999999999999


Q ss_pred             CCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          236 GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      ++||+|++.++++|++|+..+++++.++|||||.+.+..+
T Consensus        80 ~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~  119 (231)
T d1vl5a_          80 ERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDN  119 (231)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cccccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeC
Confidence            9999999999999999999999999999999987777655

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.83  E-value=3.9e-20  Score=164.73  Aligned_cols=110  Identities=11%  Similarity=0.087  Sum_probs=97.6

Q ss_pred             hccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEE
Q 020988          163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH  242 (319)
Q Consensus       163 ~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~  242 (319)
                      ...++.+|||||||+|.++..+++.. ..+|+|+|+|+.+++.|+++....+  ...+++++++|+.++|+++++||+|+
T Consensus        64 ~l~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~g--l~~~v~~~~~d~~~l~~~~~sfD~V~  140 (282)
T d2o57a1          64 VLQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAG--LADNITVKYGSFLEIPCEDNSYDFIW  140 (282)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHT--CTTTEEEEECCTTSCSSCTTCEEEEE
T ss_pred             CCCCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhccccccc--ccccccccccccccccccccccchhh
Confidence            45689999999999999999998863 2499999999999999999887753  34689999999999999999999999


Q ss_pred             ecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          243 AGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       243 ~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      +..+++|++|+..+++++.++|||||.+.+..+
T Consensus       141 ~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~  173 (282)
T d2o57a1         141 SQDAFLHSPDKLKVFQECARVLKPRGVMAITDP  173 (282)
T ss_dssp             EESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccchhhhccCHHHHHHHHHHhcCCCcEEEEEEe
Confidence            999999999999999999999999987665544

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.81  E-value=1.6e-19  Score=154.45  Aligned_cols=105  Identities=22%  Similarity=0.314  Sum_probs=92.6

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (319)
                      .++.+|||||||+|.++..+++.+.  +|+|+|+|++|++.|+++....    ...+.++.+|+.++|+++++||+|++.
T Consensus        36 ~~~~~ILDiGcG~G~~~~~la~~~~--~v~giD~S~~~i~~ak~~~~~~----~~~~~~~~~d~~~l~~~~~~fD~I~~~  109 (226)
T d1ve3a1          36 KKRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSR----ESNVEFIVGDARKLSFEDKTFDYVIFI  109 (226)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCCEEEECCTTSCCSCTTCEEEEEEE
T ss_pred             CCCCEEEEECCCcchhhhhHhhhhc--ccccccccccchhhhhhhhccc----cccccccccccccccccCcCceEEEEe
Confidence            4678999999999999999999876  9999999999999999988764    356788999999999999999999999


Q ss_pred             ccccCCC--CHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          245 AALHCWP--SPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       245 ~vl~h~~--d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      ++++|++  |+..+++++.++|||||.+-+.+.
T Consensus       110 ~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~  142 (226)
T d1ve3a1         110 DSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFT  142 (226)
T ss_dssp             SCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cchhhCChhHHHHHHHHHHHHcCcCcEEEEEEc
Confidence            9999997  566789999999999887654444

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=2.1e-19  Score=156.59  Aligned_cols=121  Identities=14%  Similarity=0.138  Sum_probs=103.5

Q ss_pred             CcHHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCC
Q 020988          150 GPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC  229 (319)
Q Consensus       150 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~  229 (319)
                      ...+..+.+.+.+...++.+|||||||+|.++..+++..+ .+|+|+|+|+.|++.|+++....+  ...+++++.+|+.
T Consensus        17 ~~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~~g--l~~~v~~~~~d~~   93 (245)
T d1nkva_          17 FTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELG--VSERVHFIHNDAA   93 (245)
T ss_dssp             CCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEESCCT
T ss_pred             CCHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHHhh--ccccchhhhhHHh
Confidence            3444567788888889999999999999999999988743 599999999999999999887753  3457999999999


Q ss_pred             CCCCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEE
Q 020988          230 RLPFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQ  274 (319)
Q Consensus       230 ~lp~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~  274 (319)
                      ++. .+++||+|++.++++|++|+..++++++++|||||.+.+..
T Consensus        94 ~~~-~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~  137 (245)
T d1nkva_          94 GYV-ANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGE  137 (245)
T ss_dssp             TCC-CSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred             hcc-ccCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEe
Confidence            984 57899999999999999999999999999999887655443

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.76  E-value=1.1e-18  Score=151.09  Aligned_cols=99  Identities=24%  Similarity=0.210  Sum_probs=86.8

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (319)
                      .++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|+++...         .++.+|++++|+++++||+|++.
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~giD~s~~~l~~a~~~~~~---------~~~~~~~~~l~~~~~~fD~ii~~  109 (246)
T d2avna1          41 KNPCRVLDLGGGTGKWSLFLQERGF--EVVLVDPSKEMLEVAREKGVK---------NVVEAKAEDLPFPSGAFEAVLAL  109 (246)
T ss_dssp             CSCCEEEEETCTTCHHHHHHHTTTC--EEEEEESCHHHHHHHHHHTCS---------CEEECCTTSCCSCTTCEEEEEEC
T ss_pred             CCCCEEEEECCCCchhcccccccce--EEEEeeccccccccccccccc---------ccccccccccccccccccceeee
Confidence            3678999999999999999999876  999999999999999987422         36789999999999999999985


Q ss_pred             -ccccCCCCHHHHHHHHHHhhcCCCeeEEEE
Q 020988          245 -AALHCWPSPSNAASVFSSSYSLLSICYLLQ  274 (319)
Q Consensus       245 -~vl~h~~d~~~~l~el~rvlk~g~~~g~~~  274 (319)
                       .++||++|+..+++++.++|||||.+.+-+
T Consensus       110 ~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~  140 (246)
T d2avna1         110 GDVLSYVENKDKAFSEIRRVLVPDGLLIATV  140 (246)
T ss_dssp             SSHHHHCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cchhhhhhhHHHHHHHHHhhcCcCcEEEEEE
Confidence             699999999999999999999887655444

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.76  E-value=1.6e-18  Score=149.08  Aligned_cols=106  Identities=9%  Similarity=0.107  Sum_probs=91.5

Q ss_pred             HHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCcc
Q 020988          160 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVD  239 (319)
Q Consensus       160 ~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD  239 (319)
                      .+....++++|||||||+|.++..+++.+.  +|+|+|+|+++++.|+++.       ..++.++.+|++++++ +++||
T Consensus        14 ~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~--~v~giD~s~~~i~~a~~~~-------~~~~~~~~~~~~~~~~-~~~fD   83 (225)
T d2p7ia1          14 AFTPFFRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRL-------KDGITYIHSRFEDAQL-PRRYD   83 (225)
T ss_dssp             HHGGGCCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHS-------CSCEEEEESCGGGCCC-SSCEE
T ss_pred             HhhhhCCCCcEEEEeCCCcHHHHHHHHcCC--eEEEEeCcHHHhhhhhccc-------cccccccccccccccc-ccccc
Confidence            344445678999999999999999999887  8999999999999999875       3479999999988876 57999


Q ss_pred             EEEecccccCCCCHHHHHHHHH-HhhcCCCeeEEEEe
Q 020988          240 AVHAGAALHCWPSPSNAASVFS-SSYSLLSICYLLQF  275 (319)
Q Consensus       240 ~V~~~~vl~h~~d~~~~l~el~-rvlk~g~~~g~~~~  275 (319)
                      +|++.++|||++|+...++++. ++|+|||...+.+.
T Consensus        84 ~I~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~~p  120 (225)
T d2p7ia1          84 NIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCP  120 (225)
T ss_dssp             EEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             cccccceeEecCCHHHHHHHHHHHhcCCCceEEEEeC
Confidence            9999999999999999999997 78888876666554

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.75  E-value=1.1e-17  Score=140.92  Aligned_cols=109  Identities=17%  Similarity=0.156  Sum_probs=92.1

Q ss_pred             HhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccE
Q 020988          161 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA  240 (319)
Q Consensus       161 ~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~  240 (319)
                      .+...++++|||||||+|.++..+++.++  +|+|+|+|+.+++.++++....   ...++.+...|+..+++ +++||+
T Consensus        25 ~~~~~~~grvLDiGcG~G~~~~~la~~g~--~v~gvD~s~~~l~~a~~~~~~~---~~~~~~~~~~d~~~~~~-~~~fD~   98 (198)
T d2i6ga1          25 AAKVVAPGRTLDLGCGNGRNSLYLAANGY--DVTAWDKNPASMANLERIKAAE---GLDNLQTDLVDLNTLTF-DGEYDF   98 (198)
T ss_dssp             HHTTSCSCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT---TCTTEEEEECCTTTCCC-CCCEEE
T ss_pred             HcccCCCCcEEEECCCCCHHHHHHHHHhh--hhccccCcHHHHHHHHHHhhhc---cccchhhhheecccccc-cccccE
Confidence            34444567999999999999999999987  9999999999999999888765   24678999999999886 579999


Q ss_pred             EEecccccCCCCHH--HHHHHHHHhhcCCCeeEEEEe
Q 020988          241 VHAGAALHCWPSPS--NAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       241 V~~~~vl~h~~d~~--~~l~el~rvlk~g~~~g~~~~  275 (319)
                      |++..+++|+++..  .+++++.++|+|+|.+.+..+
T Consensus        99 I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  135 (198)
T d2i6ga1          99 ILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAA  135 (198)
T ss_dssp             EEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            99999999997654  688889999888876655544

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.75  E-value=5e-18  Score=143.82  Aligned_cols=95  Identities=14%  Similarity=0.096  Sum_probs=85.2

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (319)
                      .++++|||||||+|.++..+.      +++|+|+|+.+++.|+++          ++.++++|++++|+++++||+|++.
T Consensus        35 ~~~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~~----------~~~~~~~d~~~l~~~~~~fD~I~~~   98 (208)
T d1vlma_          35 LPEGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARKR----------GVFVLKGTAENLPLKDESFDFALMV   98 (208)
T ss_dssp             CCSSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHHT----------TCEEEECBTTBCCSCTTCEEEEEEE
T ss_pred             CCCCeEEEECCCCcccccccc------eEEEEeCChhhccccccc----------ccccccccccccccccccccccccc
Confidence            456799999999999987773      578999999999999874          6889999999999999999999999


Q ss_pred             ccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          245 AALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       245 ~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      ++|+|++|+..+++++.++|+|+|...+..+
T Consensus        99 ~~l~h~~d~~~~l~~~~~~L~pgG~l~i~~~  129 (208)
T d1vlma_          99 TTICFVDDPERALKEAYRILKKGGYLIVGIV  129 (208)
T ss_dssp             SCGGGSSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cccccccccccchhhhhhcCCCCceEEEEec
Confidence            9999999999999999999999887766655

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.4e-18  Score=147.68  Aligned_cols=106  Identities=10%  Similarity=0.087  Sum_probs=90.7

Q ss_pred             ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (319)
                      ..++.+|||||||+|.++..+++.++ .+|+|+|+|+.|++.|++++...+   ..+++++++|++++++++++||+|++
T Consensus        58 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~ak~~~~~~~---~~~~~f~~~d~~~~~~~~~~fD~I~~  133 (222)
T d2ex4a1          58 KTGTSCALDCGAGIGRITKRLLLPLF-REVDMVDITEDFLVQAKTYLGEEG---KRVRNYFCCGLQDFTPEPDSYDVIWI  133 (222)
T ss_dssp             CCCCSEEEEETCTTTHHHHHTTTTTC-SEEEEEESCHHHHHHHHHHTGGGG---GGEEEEEECCGGGCCCCSSCEEEEEE
T ss_pred             CCCCCEEEEeccCCCHhhHHHHHhcC-CEEEEeecCHHHhhcccccccccc---cccccccccccccccccccccccccc
Confidence            45678999999999999998876643 489999999999999999987652   45789999999999988899999999


Q ss_pred             cccccCCCCHH--HHHHHHHHhhcCCCeeEEE
Q 020988          244 GAALHCWPSPS--NAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       244 ~~vl~h~~d~~--~~l~el~rvlk~g~~~g~~  273 (319)
                      .++++|+++++  .++++++++|||+|.+.+.
T Consensus       134 ~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~  165 (222)
T d2ex4a1         134 QWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIK  165 (222)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccccccchhhhhhhHHHHHHHhcCCcceEEEE
Confidence            99999998874  6899999999887765544

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.74  E-value=8.3e-18  Score=146.31  Aligned_cols=104  Identities=21%  Similarity=0.297  Sum_probs=87.8

Q ss_pred             hhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEE
Q 020988          162 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV  241 (319)
Q Consensus       162 l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V  241 (319)
                      ....++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|+++++..    ..++.++++|+++++++ ++||+|
T Consensus        37 ~~~~~~~~iLDiGcGtG~~~~~l~~~~~--~v~gvD~s~~mi~~a~~~~~~~----~~~i~~~~~d~~~l~~~-~~fD~I  109 (251)
T d1wzna1          37 DAKREVRRVLDLACGTGIPTLELAERGY--EVVGLDLHEEMLRVARRKAKER----NLKIEFLQGDVLEIAFK-NEFDAV  109 (251)
T ss_dssp             TCSSCCCEEEEETCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCCEEEESCGGGCCCC-SCEEEE
T ss_pred             hcCCCCCEEEEeCCCCCccchhhcccce--EEEEEeeccccccccccccccc----cccchheehhhhhcccc-cccchH
Confidence            3455678999999999999999999886  9999999999999999998774    35799999999999986 589999


Q ss_pred             Eec-ccccCCC--CHHHHHHHHHHhhcCCCeeEE
Q 020988          242 HAG-AALHCWP--SPSNAASVFSSSYSLLSICYL  272 (319)
Q Consensus       242 ~~~-~vl~h~~--d~~~~l~el~rvlk~g~~~g~  272 (319)
                      ++. .+++|+.  +...+++++.++|||||.+.+
T Consensus       110 ~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii  143 (251)
T d1wzna1         110 TMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFIT  143 (251)
T ss_dssp             EECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             hhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEE
Confidence            986 5888873  345788899999888775543

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.73  E-value=1.2e-17  Score=148.58  Aligned_cols=107  Identities=15%  Similarity=0.143  Sum_probs=93.3

Q ss_pred             hccCCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEE
Q 020988          163 KSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV  241 (319)
Q Consensus       163 ~~~~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V  241 (319)
                      ...++.+|||||||+|.++..+++..+ ..+|+|+|+|+.+++.|+++....    ..+++++++|+.++++. ++||+|
T Consensus        24 ~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~----~~~~~f~~~d~~~~~~~-~~fD~v   98 (281)
T d2gh1a1          24 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL----PYDSEFLEGDATEIELN-DKYDIA   98 (281)
T ss_dssp             CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSS----SSEEEEEESCTTTCCCS-SCEEEE
T ss_pred             ccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccc----ccccccccccccccccc-CCceEE
Confidence            345778999999999999999988754 358999999999999999998764    34789999999999875 579999


Q ss_pred             EecccccCCCCHHHHHHHHHHhhcCCCeeEEEE
Q 020988          242 HAGAALHCWPSPSNAASVFSSSYSLLSICYLLQ  274 (319)
Q Consensus       242 ~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~  274 (319)
                      ++.++++|++|+..+++++.++|||||...++.
T Consensus        99 ~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~  131 (281)
T d2gh1a1          99 ICHAFLLHMTTPETMLQKMIHSVKKGGKIICFE  131 (281)
T ss_dssp             EEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEE
Confidence            999999999999999999999999988665544

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.70  E-value=7e-17  Score=140.32  Aligned_cols=101  Identities=15%  Similarity=0.174  Sum_probs=82.8

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (319)
                      .++++|||||||+|.++..+++.+.  +|+|+|+|+.|++.|+++.+..    ..+++++++|+.++++. ++||+|+|.
T Consensus        36 ~~~~~vLDiGCG~G~~~~~l~~~g~--~v~GvD~S~~ml~~A~~~~~~~----~~~v~~~~~d~~~~~~~-~~fD~i~~~  108 (246)
T d1y8ca_          36 LVFDDYLDLACGTGNLTENLCPKFK--NTWAVDLSQEMLSEAENKFRSQ----GLKPRLACQDISNLNIN-RKFDLITCC  108 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHGGGSS--EEEEECSCHHHHHHHHHHHHHT----TCCCEEECCCGGGCCCS-CCEEEEEEC
T ss_pred             CCCCeEEEEeCcCCHHHHHHHHhCC--ccEeeccchhhhhhcccccccc----Cccceeeccchhhhccc-cccccccee
Confidence            4568999999999999999999987  9999999999999999988764    35799999999998864 689999986


Q ss_pred             -ccccCCCCHHH---HHHHHHHhhcCCCeeEEEEe
Q 020988          245 -AALHCWPSPSN---AASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       245 -~vl~h~~d~~~---~l~el~rvlk~g~~~g~~~~  275 (319)
                       ++++|+.+++.   +++++.++|+|+   |.+++
T Consensus       109 ~~~~~~~~~~~~~~~~l~~~~~~Lkpg---G~~i~  140 (246)
T d1y8ca_         109 LDSTNYIIDSDDLKKYFKAVSNHLKEG---GVFIF  140 (246)
T ss_dssp             TTGGGGCCSHHHHHHHHHHHHTTEEEE---EEEEE
T ss_pred             eeeeeccCCHHHHHHHHHHHHHhCCCC---eEEEE
Confidence             68999987665   455555555555   55554

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.70  E-value=2.8e-17  Score=143.99  Aligned_cols=111  Identities=7%  Similarity=0.011  Sum_probs=92.3

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (319)
                      +.+.+.+...++.+|||+|||+|.++..++..+. .+|+++|+|+.|++.|++++..     ..+++++++|+.++++++
T Consensus        83 ~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~-~~v~~vD~s~~~l~~a~~~~~~-----~~~~~~~~~d~~~~~~~~  156 (254)
T d1xtpa_          83 RNFIASLPGHGTSRALDCGAGIGRITKNLLTKLY-ATTDLLEPVKHMLEEAKRELAG-----MPVGKFILASMETATLPP  156 (254)
T ss_dssp             HHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHC-SEEEEEESCHHHHHHHHHHTTT-----SSEEEEEESCGGGCCCCS
T ss_pred             HHHHhhCCCCCCCeEEEecccCChhhHHHHhhcC-ceEEEEcCCHHHHHhhhccccc-----cccceeEEccccccccCC
Confidence            3444455566788999999999999998876643 3899999999999999998754     356899999999999888


Q ss_pred             CCccEEEecccccCCCCHH--HHHHHHHHhhcCCCeeEE
Q 020988          236 GFVDAVHAGAALHCWPSPS--NAASVFSSSYSLLSICYL  272 (319)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~--~~l~el~rvlk~g~~~g~  272 (319)
                      ++||+|++..+++|++|++  .++++++++|+|+|.+.+
T Consensus       157 ~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii  195 (254)
T d1xtpa_         157 NTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFF  195 (254)
T ss_dssp             SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEE
Confidence            9999999999999998875  678889999888765544

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.69  E-value=1.7e-16  Score=136.16  Aligned_cols=108  Identities=12%  Similarity=0.169  Sum_probs=89.7

Q ss_pred             ccCCCeEEEEcCCcChHHHHHHhh--CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEE
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFAKS--GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV  241 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~~~--g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V  241 (319)
                      ..++.+|||||||+|..+..+++.  .+..+|+|+|+|+.|++.|+++++..+  ...++.+..+|+.++++  ..+|+|
T Consensus        37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~--~~~~~~~~~~d~~~~~~--~~~d~i  112 (225)
T d1im8a_          37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH--SEIPVEILCNDIRHVEI--KNASMV  112 (225)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSC--CSSCEEEECSCTTTCCC--CSEEEE
T ss_pred             cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhc--ccchhhhccchhhcccc--ccceee
Confidence            357889999999999999999875  356799999999999999999887642  34567788888877664  579999


Q ss_pred             EecccccCCC--CHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          242 HAGAALHCWP--SPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       242 ~~~~vl~h~~--d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      ++..+++|++  ++..++++++|+|||+|.+.+..+
T Consensus       113 ~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~  148 (225)
T d1im8a_         113 ILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK  148 (225)
T ss_dssp             EEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEeeeccccChhhHHHHHHHHHHhCCCCceeecccc
Confidence            9999999985  677899999999999887766543

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.67  E-value=8.8e-17  Score=134.09  Aligned_cols=115  Identities=14%  Similarity=0.153  Sum_probs=93.0

Q ss_pred             HHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCc---------cCCCCeEEEEcCCC
Q 020988          159 QEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT---------ILTSNLALVRADVC  229 (319)
Q Consensus       159 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~---------~~~~~i~~~~~d~~  229 (319)
                      ...+...++.+|||+|||+|..+..+++.|.  +|+|+|+|+.|++.|+++.+..+.         .....+.++++|+.
T Consensus        13 ~~~l~~~~~~rvLd~GCG~G~~a~~la~~G~--~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~   90 (201)
T d1pjza_          13 WSSLNVVPGARVLVPLCGKSQDMSWLSGQGY--HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFF   90 (201)
T ss_dssp             HHHHCCCTTCEEEETTTCCSHHHHHHHHHCC--EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCS
T ss_pred             HHHcCCCCCCEEEEecCcCCHHHHHHHHcCC--ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccc
Confidence            3446677899999999999999999999988  999999999999999998754311         01245678999998


Q ss_pred             CCCC-CCCCccEEEecccccCCCC--HHHHHHHHHHhhcCCCeeEEEEe
Q 020988          230 RLPF-ASGFVDAVHAGAALHCWPS--PSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       230 ~lp~-~~~~fD~V~~~~vl~h~~d--~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      +++. ...+||+|++..+++|+++  ....++++.++|||+|.+.+..+
T Consensus        91 ~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~  139 (201)
T d1pjza_          91 ALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITL  139 (201)
T ss_dssp             SSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEE
T ss_pred             ccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEc
Confidence            8863 4578999999999999975  35778889999999887655444

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.4e-16  Score=135.66  Aligned_cols=120  Identities=19%  Similarity=0.192  Sum_probs=98.0

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCc--------------cCCCC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT--------------ILTSN  220 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~--------------~~~~~  220 (319)
                      .+.+.+++...++.+|||+|||+|..+..+++.|.  +|+|||+|+.+++.|+++......              ....+
T Consensus        34 ~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~--~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (229)
T d2bzga1          34 KKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGH--SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGN  111 (229)
T ss_dssp             HHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTC--EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSS
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCc
Confidence            45666777778899999999999999999999998  999999999999999988653210              11357


Q ss_pred             eEEEEcCCCCCC-CCCCCccEEEecccccCCC--CHHHHHHHHHHhhcCCCeeEEEEee
Q 020988          221 LALVRADVCRLP-FASGFVDAVHAGAALHCWP--SPSNAASVFSSSYSLLSICYLLQFR  276 (319)
Q Consensus       221 i~~~~~d~~~lp-~~~~~fD~V~~~~vl~h~~--d~~~~l~el~rvlk~g~~~g~~~~~  276 (319)
                      ++++++|+..++ ...+.||+|+...+++|++  +....++++.++|||||.+.+..+.
T Consensus       112 v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~  170 (229)
T d2bzga1         112 ISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLS  170 (229)
T ss_dssp             EEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             EEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcc
Confidence            899999998874 5578999999999999995  3457788999999999876655553

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.67  E-value=3.8e-16  Score=138.43  Aligned_cols=115  Identities=13%  Similarity=0.123  Sum_probs=96.4

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (319)
                      .+.+.+.+...++.+|||||||+|.++..+++.. ..+|+|+|+|+++++.|++++++.+  ...++.+...|..++   
T Consensus        41 ~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~-g~~v~gi~ls~~q~~~a~~~~~~~~--l~~~~~~~~~d~~~~---  114 (280)
T d2fk8a1          41 VDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASID--TNRSRQVLLQGWEDF---  114 (280)
T ss_dssp             HHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSC--CSSCEEEEESCGGGC---
T ss_pred             HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhC-ceeEEEecchHHHHHHHHHHHHhhc--cccchhhhhhhhhhh---
Confidence            3556666677899999999999999999988773 2499999999999999999988764  345677777777655   


Q ss_pred             CCCccEEEecccccCCCCH--HHHHHHHHHhhcCCCeeEEEEe
Q 020988          235 SGFVDAVHAGAALHCWPSP--SNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~--~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      +++||.|++..+++|+.++  ..+++++.++|||+|...+-.+
T Consensus       115 ~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i  157 (280)
T d2fk8a1         115 AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSS  157 (280)
T ss_dssp             CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEe
Confidence            3689999999999999765  7889999999999999887654

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.66  E-value=2.9e-16  Score=137.46  Aligned_cols=132  Identities=12%  Similarity=0.067  Sum_probs=110.3

Q ss_pred             HHhhhhCCCCCcHHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCC
Q 020988          140 RQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILT  218 (319)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~  218 (319)
                      -..+.+.-..-.......+...+...|+.+|||+|||+|.++..+++. ++..+|+++|+++++++.|+++++.......
T Consensus        70 ~~~~~r~tqiiypkD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~  149 (264)
T d1i9ga_          70 VMSMPRGPQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPP  149 (264)
T ss_dssp             HTTSCSCSCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCC
T ss_pred             HhhccCCccccchHHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCC
Confidence            333333333334456677888899999999999999999999999987 7788999999999999999998876433346


Q ss_pred             CCeEEEEcCCCCCCCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988          219 SNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFR  276 (319)
Q Consensus       219 ~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~  276 (319)
                      .++.+..+|+.+.++++++||.|++     |+++|..++.++.++|||||....+...
T Consensus       150 ~nv~~~~~d~~~~~~~~~~fDaV~l-----dlp~P~~~l~~~~~~LkpGG~lv~~~P~  202 (264)
T d1i9ga_         150 DNWRLVVSDLADSELPDGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVLMVYVAT  202 (264)
T ss_dssp             TTEEEECSCGGGCCCCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred             ceEEEEecccccccccCCCcceEEE-----ecCCHHHHHHHHHhccCCCCEEEEEeCc
Confidence            7999999999998888999999975     7999999999999999999988777763

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.66  E-value=3e-16  Score=136.92  Aligned_cols=105  Identities=13%  Similarity=0.127  Sum_probs=85.4

Q ss_pred             ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC-CCCCccEEE
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-ASGFVDAVH  242 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-~~~~fD~V~  242 (319)
                      ..++.+|||||||+|..+..+++.+. .+|+|+|+|+.|++.|+++....+  ...++.+.++|+...++ .+++||+|+
T Consensus        22 ~~~~~~VLDlGCG~G~~~~~~~~~~~-~~v~GiD~S~~~l~~A~~r~~~~~--~~~~v~f~~~D~~~~~~~~~~~fD~V~   98 (252)
T d1ri5a_          22 TKRGDSVLDLGCGKGGDLLKYERAGI-GEYYGVDIAEVSINDARVRARNMK--RRFKVFFRAQDSYGRHMDLGKEFDVIS   98 (252)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHHTC-SEEEEEESCHHHHHHHHHHHHTSC--CSSEEEEEESCTTTSCCCCSSCEEEEE
T ss_pred             CCCcCEEEEecccCcHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHhcC--CCcceEEEEcchhhhcccccccceEEE
Confidence            35688999999999999999988764 479999999999999999886642  23478999999987765 467899999


Q ss_pred             ecccccCCCCH----HHHHHHHHHhhcCCCeeE
Q 020988          243 AGAALHCWPSP----SNAASVFSSSYSLLSICY  271 (319)
Q Consensus       243 ~~~vl~h~~d~----~~~l~el~rvlk~g~~~g  271 (319)
                      +.+++||+.++    ..+++++.++|||||.+-
T Consensus        99 ~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i  131 (252)
T d1ri5a_          99 SQFSFHYAFSTSESLDIAQRNIARHLRPGGYFI  131 (252)
T ss_dssp             EESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEE
T ss_pred             EcceeeecCCCHHHHHHHHHHHhceeCCCCEEE
Confidence            99999998544    356777888877776543

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.66  E-value=6.8e-16  Score=137.32  Aligned_cols=116  Identities=16%  Similarity=0.092  Sum_probs=98.0

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (319)
                      .+.+.+.+...+|.+|||||||.|.++..+++.. +++|+|+++|+++++.+++++...+  ...++.+...|..   +.
T Consensus        50 ~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~-g~~v~git~s~~q~~~a~~~~~~~~--l~~~v~~~~~d~~---~~  123 (291)
T d1kpia_          50 RKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEY-DVNVIGLTLSENQYAHDKAMFDEVD--SPRRKEVRIQGWE---EF  123 (291)
T ss_dssp             HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHSC--CSSCEEEEECCGG---GC
T ss_pred             HHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhc-CcceeeccchHHHHHHHHHHHHhhc--cchhhhhhhhccc---cc
Confidence            4566677788899999999999999999888764 3599999999999999999988764  4457788777753   44


Q ss_pred             CCCccEEEecccccCCCCH---------HHHHHHHHHhhcCCCeeEEEEee
Q 020988          235 SGFVDAVHAGAALHCWPSP---------SNAASVFSSSYSLLSICYLLQFR  276 (319)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~---------~~~l~el~rvlk~g~~~g~~~~~  276 (319)
                      +++||.|++..+++|+.++         ..+++++.++|||||.+.+-.+.
T Consensus       124 ~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~  174 (291)
T d1kpia_         124 DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTIT  174 (291)
T ss_dssp             CCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEE
T ss_pred             ccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEe
Confidence            6899999999999999873         68899999999999998877663

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.65  E-value=9.6e-16  Score=135.94  Aligned_cols=116  Identities=16%  Similarity=0.132  Sum_probs=100.5

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (319)
                      .+.+.+.+...+|.+|||||||.|.++..+++.. +++|+|+++|+.+++.|+++..+.+  ...++++..+|..+++  
T Consensus        51 ~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~g--~~~~v~~~~~d~~~~~--  125 (285)
T d1kpga_          51 IDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSE--NLRSKRVLLAGWEQFD--  125 (285)
T ss_dssp             HHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCC--CCSCEEEEESCGGGCC--
T ss_pred             HHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhhh--hhhhhHHHHhhhhccc--
Confidence            3566667788899999999999999999888774 4699999999999999999987754  5678999999988775  


Q ss_pred             CCCccEEEecccccCCCC--HHHHHHHHHHhhcCCCeeEEEEee
Q 020988          235 SGFVDAVHAGAALHCWPS--PSNAASVFSSSYSLLSICYLLQFR  276 (319)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d--~~~~l~el~rvlk~g~~~g~~~~~  276 (319)
                       ++||.|++..+++|+.+  ...+++++.++|||+|...+..+.
T Consensus       126 -~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~  168 (285)
T d1kpga_         126 -EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTIT  168 (285)
T ss_dssp             -CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             -ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEe
Confidence             68999999999999954  478999999999999999887774

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.64  E-value=5e-16  Score=129.48  Aligned_cols=119  Identities=14%  Similarity=0.106  Sum_probs=98.5

Q ss_pred             CcHHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCC
Q 020988          150 GPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC  229 (319)
Q Consensus       150 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~  229 (319)
                      ...+....+...+...++.+|||||||+|.++..+++.+.  +|+|+|+++++++.|+++++..+  ...+++++++|+.
T Consensus        17 t~~eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~~~--~V~avD~~~~~l~~a~~n~~~~g--l~~~v~~~~gda~   92 (186)
T d1l3ia_          17 TAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVR--RVYAIDRNPEAISTTEMNLQRHG--LGDNVTLMEGDAP   92 (186)
T ss_dssp             CCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTSS--EEEEEESCHHHHHHHHHHHHHTT--CCTTEEEEESCHH
T ss_pred             ChHHHHHHHHHhcCCCCCCEEEEEECCeEcccccccccce--EEEEecCCHHHHHHHHHHHHHcC--CCcceEEEECchh
Confidence            3444557777788889999999999999999999998765  99999999999999999998863  3469999999998


Q ss_pred             CCCCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          230 RLPFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       230 ~lp~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      +.+...+.||.|++....+|   ....++++.+.|||+|...+...
T Consensus        93 ~~~~~~~~~D~v~~~~~~~~---~~~~~~~~~~~LkpgG~lvi~~~  135 (186)
T d1l3ia_          93 EALCKIPDIDIAVVGGSGGE---LQEILRIIKDKLKPGGRIIVTAI  135 (186)
T ss_dssp             HHHTTSCCEEEEEESCCTTC---HHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             hcccccCCcCEEEEeCcccc---chHHHHHHHHHhCcCCEEEEEee
Confidence            88777789999999876654   46778888899888776554433

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.62  E-value=2.3e-15  Score=126.13  Aligned_cols=117  Identities=11%  Similarity=0.124  Sum_probs=96.3

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (319)
                      .+.+.+.+...++.+|||+|||+|.++..+++.++  +|+++|+|+.+++.++++++.++. ...++.+..+|+.+ +++
T Consensus        41 t~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~~~--~v~~iD~s~~~i~~a~~n~~~~~l-~~~~i~~~~~d~~~-~~~  116 (194)
T d1dusa_          41 TKILVENVVVDKDDDILDLGCGYGVIGIALADEVK--STTMADINRRAIKLAKENIKLNNL-DNYDIRVVHSDLYE-NVK  116 (194)
T ss_dssp             HHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTC-TTSCEEEEECSTTT-TCT
T ss_pred             HHHHHHhCCcCCCCeEEEEeecCChhHHHHHhhcc--ccceeeeccccchhHHHHHHHhCC-ccceEEEEEcchhh-hhc
Confidence            35667777788899999999999999999999877  999999999999999998876531 23468999999877 566


Q ss_pred             CCCccEEEecccccCCCCH-HHHHHHHHHhhcCCCeeEEEEe
Q 020988          235 SGFVDAVHAGAALHCWPSP-SNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~-~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      +++||+|++..++++..+. ..+++++.++|+|+|...+...
T Consensus       117 ~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  158 (194)
T d1dusa_         117 DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQ  158 (194)
T ss_dssp             TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEEe
Confidence            8899999999888877653 5678889999988876655443

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=5.5e-16  Score=137.20  Aligned_cols=110  Identities=8%  Similarity=0.010  Sum_probs=84.7

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhh----C--CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeE--EEEcCCCC------
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKS----G--TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLA--LVRADVCR------  230 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~----g--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~--~~~~d~~~------  230 (319)
                      .+..+|||||||+|.++..+++.    .  ....++|+|+|+.|++.+++++....  ...++.  +...+++.      
T Consensus        39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  116 (280)
T d1jqea_          39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKIS--NLENVKFAWHKETSSEYQSRML  116 (280)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCC--SCTTEEEEEECSCHHHHHHHHT
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhcc--ccccccccchhhhhhhhcchhc
Confidence            34458999999999998777654    2  23468999999999999999986532  123443  34444322      


Q ss_pred             CCCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988          231 LPFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFR  276 (319)
Q Consensus       231 lp~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~  276 (319)
                      .+..+++||+|++.++++|++|+..+++++.++|+|+|.+.+....
T Consensus       117 ~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~  162 (280)
T d1jqea_         117 EKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVS  162 (280)
T ss_dssp             TSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             ccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEec
Confidence            3456789999999999999999999999999999999877776663

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.59  E-value=4.4e-15  Score=129.59  Aligned_cols=114  Identities=14%  Similarity=0.243  Sum_probs=93.1

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (319)
                      +.+.+.+......+|||||||+|.++..+++..+..+++++|+ +.+++.+++++...+  ...+++++.+|+.+. . .
T Consensus        70 ~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~--~~~rv~~~~~D~~~~-~-~  144 (253)
T d1tw3a2          70 DAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEG--LSDRVDVVEGDFFEP-L-P  144 (253)
T ss_dssp             HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTT--CTTTEEEEECCTTSC-C-S
T ss_pred             HHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhh--cccchhhccccchhh-c-c
Confidence            4555566666778999999999999999999999889999998 678999999887753  456899999998653 2 2


Q ss_pred             CCccEEEecccccCCCCHH--HHHHHHHHhhcCCCeeEEEE
Q 020988          236 GFVDAVHAGAALHCWPSPS--NAASVFSSSYSLLSICYLLQ  274 (319)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~--~~l~el~rvlk~g~~~g~~~  274 (319)
                      .+||+|++.++|||+++.+  .++++++++|||||...+..
T Consensus       145 ~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e  185 (253)
T d1tw3a2         145 RKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHE  185 (253)
T ss_dssp             SCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEe
Confidence            5799999999999998764  66888999888887655543

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.4e-15  Score=130.78  Aligned_cols=102  Identities=9%  Similarity=0.109  Sum_probs=85.7

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC--CCCCCCccEEE
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAVH  242 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD~V~  242 (319)
                      .++++|||||||+|..+..+++.++ .+++|+|+|+.+++.|+++.+..    ..++.++..++...  ++++++||.|+
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~~~-~~v~~id~s~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~fD~i~  126 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQ----THKVIPLKGLWEDVAPTLPDGHFDGIL  126 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGC----SSEEEEEESCHHHHGGGSCTTCEEEEE
T ss_pred             cCCCeEEEeeccchHHHHHHHHcCC-CeEEEeCCCHHHHHHHHHHhhhc----cccccccccccccccccccccccccee
Confidence            5688999999999999999988753 58999999999999999998764    45677777776543  56678999987


Q ss_pred             -----ecccccCCCCHHHHHHHHHHhhcCCCeeE
Q 020988          243 -----AGAALHCWPSPSNAASVFSSSYSLLSICY  271 (319)
Q Consensus       243 -----~~~vl~h~~d~~~~l~el~rvlk~g~~~g  271 (319)
                           +..+++|+.++..+++++.|+|||||.+.
T Consensus       127 fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~  160 (229)
T d1zx0a1         127 YDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLT  160 (229)
T ss_dssp             ECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEE
T ss_pred             ecccccccccccccCHHHHHHHHHHHcCCCcEEE
Confidence                 57789999999999999999999987654

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.57  E-value=6.1e-15  Score=125.04  Aligned_cols=109  Identities=11%  Similarity=0.039  Sum_probs=91.0

Q ss_pred             hhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEE
Q 020988          162 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV  241 (319)
Q Consensus       162 l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V  241 (319)
                      +...|+.+|||+|||+|.++..+++..+..+|+|+|+|+.|++.++++.+..     .++.++.+|+...+.....+|.|
T Consensus        52 l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~-----~ni~~i~~d~~~~~~~~~~~~~v  126 (209)
T d1nt2a_          52 LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER-----NNIIPLLFDASKPWKYSGIVEKV  126 (209)
T ss_dssp             CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC-----SSEEEECSCTTCGGGTTTTCCCE
T ss_pred             CCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhcc-----CCceEEEeeccCccccccccceE
Confidence            4567899999999999999999999877779999999999999999988764     58999999998876544455444


Q ss_pred             E-ecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          242 H-AGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       242 ~-~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      . +.+.+.|..++..+++++.++|||+|.+.+.+.
T Consensus       127 d~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  161 (209)
T d1nt2a_         127 DLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMVK  161 (209)
T ss_dssp             EEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEEecccChhhHHHHHHHHHHHhccCCeEEEEEE
Confidence            3 334677888888999999999999998877765

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.57  E-value=9e-15  Score=124.36  Aligned_cols=107  Identities=12%  Similarity=0.121  Sum_probs=90.2

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (319)
                      ...+.+.+...++.+|||||||+|+++..+++. ++..+|+++|+++.+++.|+++++..   ...++.++.+|..+.+.
T Consensus        64 ~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~---~~~n~~~~~~d~~~~~~  140 (213)
T d1dl5a1          64 MALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERL---GIENVIFVCGDGYYGVP  140 (213)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHT---TCCSEEEEESCGGGCCG
T ss_pred             hHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhh---cccccccccCchHHccc
Confidence            345667788899999999999999999999876 56678999999999999999999875   36789999999988777


Q ss_pred             CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCee
Q 020988          234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSIC  270 (319)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~  270 (319)
                      .+++||+|++..+++|+++      ++.+.|||||..
T Consensus       141 ~~~~fD~I~~~~~~~~~p~------~l~~~LkpGG~l  171 (213)
T d1dl5a1         141 EFSPYDVIFVTVGVDEVPE------TWFTQLKEGGRV  171 (213)
T ss_dssp             GGCCEEEEEECSBBSCCCH------HHHHHEEEEEEE
T ss_pred             cccchhhhhhhccHHHhHH------HHHHhcCCCcEE
Confidence            7789999999999999864      356677776654

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.56  E-value=9.2e-15  Score=125.65  Aligned_cols=109  Identities=8%  Similarity=0.001  Sum_probs=94.2

Q ss_pred             hhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-CCCCCccE
Q 020988          162 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDA  240 (319)
Q Consensus       162 l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~  240 (319)
                      ++..++.+|||+|||+|.++..+++.++...|+|+|+|+.|++.++++...     .+++..+.+|....+ +.+..+|+
T Consensus        70 l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~-----~~ni~~i~~d~~~~~~~~~~~~~v  144 (230)
T d1g8sa_          70 MPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE-----RENIIPILGDANKPQEYANIVEKV  144 (230)
T ss_dssp             CCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTT-----CTTEEEEECCTTCGGGGTTTCCCE
T ss_pred             CCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhh-----hcccceEEEeeccCccccccccee
Confidence            456789999999999999999999998888999999999999999998765     368888888887653 55678899


Q ss_pred             EEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          241 VHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       241 V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      +++...++|..++..++++++++|||+|.+.+.+.
T Consensus       145 ~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k  179 (230)
T d1g8sa_         145 DVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIK  179 (230)
T ss_dssp             EEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEeeccccchHHHHHHHHHHHHhcccCceEEEEee
Confidence            89988999999999999999999999987665544

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.56  E-value=3.5e-15  Score=132.85  Aligned_cols=116  Identities=18%  Similarity=0.153  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCcc-CCCCeEEEEcCCCC
Q 020988          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI-LTSNLALVRADVCR  230 (319)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~i~~~~~d~~~  230 (319)
                      ......+.+.+...++.+|||||||+|.++..+++.|.  +|+|+|+|+.|++.|+++....+.. ......+..+++..
T Consensus        42 ~~~~~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~g~--~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~  119 (292)
T d1xvaa_          42 AEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF--SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT  119 (292)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEESSCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGG
T ss_pred             HHHHHHHHHHhhhcCCCEEEEecCCCcHHHHHHHHcCC--eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccc
Confidence            33445667777777788999999999999999999986  9999999999999999887653210 01133455555533


Q ss_pred             ----CCCCCCCccEEEec-ccccCCCCH-------HHHHHHHHHhhcCCCee
Q 020988          231 ----LPFASGFVDAVHAG-AALHCWPSP-------SNAASVFSSSYSLLSIC  270 (319)
Q Consensus       231 ----lp~~~~~fD~V~~~-~vl~h~~d~-------~~~l~el~rvlk~g~~~  270 (319)
                          +|. .++||+|++. .+++|++++       ..+++++.++|||||.+
T Consensus       120 ~~~~~~~-~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l  170 (292)
T d1xvaa_         120 LDKDVPA-GDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLL  170 (292)
T ss_dssp             HHHHSCC-TTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEE
T ss_pred             cccccCC-CCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEE
Confidence                233 4689999975 599999764       35788888888877754

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.55  E-value=1.6e-14  Score=121.83  Aligned_cols=105  Identities=15%  Similarity=0.176  Sum_probs=91.1

Q ss_pred             CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC--CCCCCccEEEe
Q 020988          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVHA  243 (319)
Q Consensus       166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~V~~  243 (319)
                      ....|||||||+|.++..+++..|...++|+|+++.++..|.++....+   ..|+.++.+|+..+.  ++++++|.|++
T Consensus        29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~---l~Nv~~~~~Da~~l~~~~~~~~~d~v~i  105 (204)
T d2fcaa1          29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSE---AQNVKLLNIDADTLTDVFEPGEVKRVYL  105 (204)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSC---CSSEEEECCCGGGHHHHCCTTSCCEEEE
T ss_pred             CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHh---ccCchhcccchhhhhcccCchhhhcccc
Confidence            4568999999999999999999999999999999999999999988763   579999999998875  77899999999


Q ss_pred             cccccCCCCH--------HHHHHHHHHhhcCCCeeEEE
Q 020988          244 GAALHCWPSP--------SNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       244 ~~vl~h~~d~--------~~~l~el~rvlk~g~~~g~~  273 (319)
                      .+...|....        ...+++++|+|||||.+.+.
T Consensus       106 ~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~  143 (204)
T d2fcaa1         106 NFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK  143 (204)
T ss_dssp             ESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred             ccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEE
Confidence            8877766543        46899999999999876553

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.54  E-value=1.5e-14  Score=125.58  Aligned_cols=114  Identities=18%  Similarity=0.162  Sum_probs=92.2

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (319)
                      ...+...+...||.+|||+|||+|.++..+++. ++..+|+++|+++++++.|+++++..+  ...++++..+|+.+. +
T Consensus        74 ~~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~--~~~nv~~~~~Di~~~-~  150 (250)
T d1yb2a1          74 ASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFY--DIGNVRTSRSDIADF-I  150 (250)
T ss_dssp             -------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTS--CCTTEEEECSCTTTC-C
T ss_pred             HHHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhc--CCCceEEEEeeeecc-c
Confidence            345566778899999999999999999999886 677799999999999999999987642  357899999999876 4


Q ss_pred             CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988          234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFR  276 (319)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~  276 (319)
                      .+++||.|++     ++++|..++.++.++|||||.+..+..+
T Consensus       151 ~~~~fD~V~l-----d~p~p~~~l~~~~~~LKpGG~lv~~~P~  188 (250)
T d1yb2a1         151 SDQMYDAVIA-----DIPDPWNHVQKIASMMKPGSVATFYLPN  188 (250)
T ss_dssp             CSCCEEEEEE-----CCSCGGGSHHHHHHTEEEEEEEEEEESS
T ss_pred             ccceeeeeee-----cCCchHHHHHHHHHhcCCCceEEEEeCC
Confidence            5789999976     5889999999999999998877665553

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.51  E-value=9.7e-14  Score=121.18  Aligned_cols=113  Identities=12%  Similarity=0.121  Sum_probs=91.1

Q ss_pred             HHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCC
Q 020988          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (319)
Q Consensus       157 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~  236 (319)
                      .+.+.+......+|||||||+|.++..+++..|..+++++|+ +++++.+++++...+  ...++.++.+|+.+ +.+ .
T Consensus        72 ~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~--~~~ri~~~~~d~~~-~~p-~  146 (256)
T d1qzza2          72 APADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAG--LADRVTVAEGDFFK-PLP-V  146 (256)
T ss_dssp             HHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT--CTTTEEEEECCTTS-CCS-C
T ss_pred             HHHhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcC--Ccceeeeeeeeccc-ccc-c
Confidence            344444445668999999999999999999999889999998 788999999887653  45689999999875 443 4


Q ss_pred             CccEEEecccccCCCCHH--HHHHHHHHhhcCCCeeEEEE
Q 020988          237 FVDAVHAGAALHCWPSPS--NAASVFSSSYSLLSICYLLQ  274 (319)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~--~~l~el~rvlk~g~~~g~~~  274 (319)
                      .||+|++.++|||+++.+  .++++++++|||||.+-+..
T Consensus       147 ~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d  186 (256)
T d1qzza2         147 TADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLD  186 (256)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEE
Confidence            699999999999997764  56889999998887555543

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1e-13  Score=118.65  Aligned_cols=111  Identities=23%  Similarity=0.313  Sum_probs=88.1

Q ss_pred             HHHHHHh--hccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCc--cCCCCeEEEEcCCCC
Q 020988          156 KMAQEYF--KSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNT--ILTSNLALVRADVCR  230 (319)
Q Consensus       156 ~~l~~~l--~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~--~~~~~i~~~~~d~~~  230 (319)
                      ..+.+.+  ...++.+|||||||+|+.+..+++. ++..+|+++|+++++++.|++++++.+.  ....++.+..+|...
T Consensus        64 a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~  143 (224)
T d1i1na_          64 AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRM  143 (224)
T ss_dssp             HHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGG
T ss_pred             HHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeeccc
Confidence            3444555  4578999999999999999888876 5566999999999999999999876432  124578999999988


Q ss_pred             CCCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEE
Q 020988          231 LPFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYL  272 (319)
Q Consensus       231 lp~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~  272 (319)
                      .+..+++||+|++..+++++++      ++.+.|||||..-+
T Consensus       144 ~~~~~~~fD~I~~~~~~~~ip~------~l~~~LkpGG~LV~  179 (224)
T d1i1na_         144 GYAEEAPYDAIHVGAAAPVVPQ------ALIDQLKPGGRLIL  179 (224)
T ss_dssp             CCGGGCCEEEEEECSBBSSCCH------HHHHTEEEEEEEEE
T ss_pred             ccchhhhhhhhhhhcchhhcCH------HHHhhcCCCcEEEE
Confidence            8777889999999999999864      36677776665544

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.47  E-value=3.4e-13  Score=113.53  Aligned_cols=104  Identities=17%  Similarity=0.187  Sum_probs=87.1

Q ss_pred             CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC--CCCCCccEEEe
Q 020988          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVHA  243 (319)
Q Consensus       166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~V~~  243 (319)
                      ....|||||||+|.++..+++..|...++|+|+++.++..|.++....   ...|+.++.+|+..+.  +++.++|.|++
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~---~l~Ni~~~~~da~~l~~~~~~~~~~~i~i  107 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEV---GVPNIKLLWVDGSDLTDYFEDGEIDRLYL  107 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHH---CCSSEEEEECCSSCGGGTSCTTCCSEEEE
T ss_pred             CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhh---ccccceeeecCHHHHhhhccCCceehhcc
Confidence            356899999999999999999999999999999999999999988776   3579999999998875  67889999987


Q ss_pred             cccccCCCCH--------HHHHHHHHHhhcCCCeeEE
Q 020988          244 GAALHCWPSP--------SNAASVFSSSYSLLSICYL  272 (319)
Q Consensus       244 ~~vl~h~~d~--------~~~l~el~rvlk~g~~~g~  272 (319)
                      .+.-.+....        ...++++.++|||||.+.+
T Consensus       108 ~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i  144 (204)
T d1yzha1         108 NFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHF  144 (204)
T ss_dssp             ESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEE
T ss_pred             cccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEE
Confidence            6544333221        5789999999999987654

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.47  E-value=1.8e-13  Score=116.74  Aligned_cols=102  Identities=15%  Similarity=0.097  Sum_probs=84.7

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (319)
                      ..+.+.+...++.+|||||||+|+++..+++.+.  +|+++|+++.+++.|++++..     ..++.++.+|........
T Consensus        60 a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~~--~V~aiE~~~~~~~~A~~~~~~-----~~nv~~~~~d~~~g~~~~  132 (224)
T d1vbfa_          60 IFMLDELDLHKGQKVLEIGTGIGYYTALIAEIVD--KVVSVEINEKMYNYASKLLSY-----YNNIKLILGDGTLGYEEE  132 (224)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEEESCHHHHHHHHHHHTT-----CSSEEEEESCGGGCCGGG
T ss_pred             HHHHHHhhhcccceEEEecCCCCHHHHHHHHHhc--ccccccccHHHHHHHHHHHhc-----ccccccccCchhhcchhh
Confidence            3456778889999999999999999999999876  999999999999999998765     469999999987654456


Q ss_pred             CCccEEEecccccCCCCHHHHHHHHHHhhcCCCee
Q 020988          236 GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSIC  270 (319)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~  270 (319)
                      ++||+|++..+++++++      .+.+.|++||..
T Consensus       133 ~pfD~Iiv~~a~~~ip~------~l~~qLk~GGrL  161 (224)
T d1vbfa_         133 KPYDRVVVWATAPTLLC------KPYEQLKEGGIM  161 (224)
T ss_dssp             CCEEEEEESSBBSSCCH------HHHHTEEEEEEE
T ss_pred             hhHHHHHhhcchhhhhH------HHHHhcCCCCEE
Confidence            88999999999999864      245566666554

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.47  E-value=5.5e-14  Score=122.36  Aligned_cols=99  Identities=16%  Similarity=0.176  Sum_probs=80.1

Q ss_pred             ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (319)
                      ..++.+|||+|||+|.++..+++.+.  +|+|+|+|+.+++.|+++.+.++    .+++++++|+.. .+++++||+|++
T Consensus       118 ~~~g~~VLDiGcGsG~l~i~aa~~g~--~V~gvDis~~av~~A~~na~~n~----~~~~~~~~d~~~-~~~~~~fD~V~a  190 (254)
T d2nxca1         118 LRPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNG----VRPRFLEGSLEA-ALPFGPFDLLVA  190 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTT----CCCEEEESCHHH-HGGGCCEEEEEE
T ss_pred             cCccCEEEEcccchhHHHHHHHhcCC--EEEEEECChHHHHHHHHHHHHcC----CceeEEeccccc-cccccccchhhh
Confidence            35789999999999999999998876  89999999999999999988753    456788888765 345689999999


Q ss_pred             cccccCCCCHHHHHHHHHHhhcCCCeeEE
Q 020988          244 GAALHCWPSPSNAASVFSSSYSLLSICYL  272 (319)
Q Consensus       244 ~~vl~h~~d~~~~l~el~rvlk~g~~~g~  272 (319)
                      +...+.   ....++++.++|||||.+.+
T Consensus       191 ni~~~~---l~~l~~~~~~~LkpGG~lil  216 (254)
T d2nxca1         191 NLYAEL---HAALAPRYREALVPGGRALL  216 (254)
T ss_dssp             ECCHHH---HHHHHHHHHHHEEEEEEEEE
T ss_pred             cccccc---HHHHHHHHHHhcCCCcEEEE
Confidence            755543   35667888999888765543

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=4.4e-14  Score=127.73  Aligned_cols=116  Identities=9%  Similarity=0.050  Sum_probs=92.6

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCc------cCCCCeEEEEcCC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT------ILTSNLALVRADV  228 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~------~~~~~i~~~~~d~  228 (319)
                      .+.+.+.+...++.+|||||||+|.++..+++..+..+++|+|+|+.+++.|++..+..+.      ....+++++++|+
T Consensus       140 ~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~  219 (328)
T d1nw3a_         140 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF  219 (328)
T ss_dssp             HHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCT
T ss_pred             HHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcc
Confidence            4556666777889999999999999999998887667899999999999999887654210      1245899999999


Q ss_pred             CCCCCCCCCc--cEEEecccccCCCCHHHHHHHHHHhhcCCCeeE
Q 020988          229 CRLPFASGFV--DAVHAGAALHCWPSPSNAASVFSSSYSLLSICY  271 (319)
Q Consensus       229 ~~lp~~~~~f--D~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g  271 (319)
                      .++++.+..+  |+|++ +.+.|.++....++++.++||||+..-
T Consensus       220 ~~~~~~~~~~~advi~~-~~~~f~~~~~~~l~e~~r~LKpGg~iv  263 (328)
T d1nw3a_         220 LSEEWRERIANTSVIFV-NNFAFGPEVDHQLKERFANMKEGGRIV  263 (328)
T ss_dssp             TSHHHHHHHHHCSEEEE-CCTTTCHHHHHHHHHHHTTCCTTCEEE
T ss_pred             cccccccccCcceEEEE-cceecchHHHHHHHHHHHhCCCCcEEE
Confidence            9988776655  55555 556678888899999999999988653

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.1e-13  Score=122.60  Aligned_cols=121  Identities=17%  Similarity=0.221  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcC--------ccCCCCeE
Q 020988          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDN--------TILTSNLA  222 (319)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~--------~~~~~~i~  222 (319)
                      ......+...+...||.+|||+|||+|.++..+++. ++..+|+++|+++++++.|+++++..+        .....++.
T Consensus        84 pkD~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~  163 (324)
T d2b25a1          84 PKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVD  163 (324)
T ss_dssp             HHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEE
T ss_pred             cccHHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhcccccee
Confidence            345567778888999999999999999999999887 677799999999999999999987532        12346899


Q ss_pred             EEEcCCCCCC--CCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEeec
Q 020988          223 LVRADVCRLP--FASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFRY  277 (319)
Q Consensus       223 ~~~~d~~~lp--~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~~  277 (319)
                      +..+|+....  +.+..||.|++     .+++|..++.++.++|||||.+.++..+.
T Consensus       164 ~~~~di~~~~~~~~~~~fD~V~L-----D~p~P~~~l~~~~~~LKpGG~lv~~~P~i  215 (324)
T d2b25a1         164 FIHKDISGATEDIKSLTFDAVAL-----DMLNPHVTLPVFYPHLKHGGVCAVYVVNI  215 (324)
T ss_dssp             EEESCTTCCC-------EEEEEE-----CSSSTTTTHHHHGGGEEEEEEEEEEESSH
T ss_pred             EEecchhhcccccCCCCcceEee-----cCcCHHHHHHHHHHhccCCCEEEEEeCCH
Confidence            9999998754  45678999976     57888889999999999999888777633

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.45  E-value=2.5e-13  Score=118.98  Aligned_cols=117  Identities=16%  Similarity=0.165  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC
Q 020988          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (319)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (319)
                      ......+...+...++.+|||+|||+|.++..+++. ++..+|+++|+++++++.|+++++..+  ...++.+...|+..
T Consensus        89 pkd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g--~~~~v~~~~~d~~~  166 (266)
T d1o54a_          89 PKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG--LIERVTIKVRDISE  166 (266)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTT--CGGGEEEECCCGGG
T ss_pred             hHHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhc--cccCcEEEeccccc
Confidence            345667788889999999999999999999999887 467799999999999999999998753  34578888888643


Q ss_pred             CCCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988          231 LPFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFR  276 (319)
Q Consensus       231 lp~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~  276 (319)
                       .+....||.|+     .|+++|..+++++.++|||||.+.++...
T Consensus       167 -~~~~~~~D~V~-----~d~p~p~~~l~~~~~~LKpGG~lv~~~P~  206 (266)
T d1o54a_         167 -GFDEKDVDALF-----LDVPDPWNYIDKCWEALKGGGRFATVCPT  206 (266)
T ss_dssp             -CCSCCSEEEEE-----ECCSCGGGTHHHHHHHEEEEEEEEEEESS
T ss_pred             -cccccceeeeE-----ecCCCHHHHHHHHHhhcCCCCEEEEEeCc
Confidence             34567899885     58999999999999999999888776653

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.43  E-value=7.4e-13  Score=119.58  Aligned_cols=105  Identities=16%  Similarity=0.234  Sum_probs=85.7

Q ss_pred             hhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEE
Q 020988          162 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV  241 (319)
Q Consensus       162 l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V  241 (319)
                      ....++.+|||||||+|.++..+++.|. .+|+|+|.|+ +++.|++..+..+  ...++.++.+|+.++++++++||+|
T Consensus        34 ~~~~~~~~VLDlGcGtG~ls~~aa~~Ga-~~V~avd~s~-~~~~a~~~~~~~~--~~~~i~~i~~~~~~l~~~~~~~D~i  109 (328)
T d1g6q1_          34 KDLFKDKIVLDVGCGTGILSMFAAKHGA-KHVIGVDMSS-IIEMAKELVELNG--FSDKITLLRGKLEDVHLPFPKVDII  109 (328)
T ss_dssp             HHHHTTCEEEEETCTTSHHHHHHHHTCC-SEEEEEESST-HHHHHHHHHHHTT--CTTTEEEEESCTTTSCCSSSCEEEE
T ss_pred             cccCCcCEEEEeCCCCCHHHHHHHHhCC-CEEEEEeCCH-HHHHHHHHHHHhC--ccccceEEEeehhhccCcccceeEE
Confidence            3445789999999999999999998874 5899999996 6788888777654  4578999999999999988999999


Q ss_pred             Eecc---cccCCCCHHHHHHHHHHhhcCCCee
Q 020988          242 HAGA---ALHCWPSPSNAASVFSSSYSLLSIC  270 (319)
Q Consensus       242 ~~~~---vl~h~~d~~~~l~el~rvlk~g~~~  270 (319)
                      ++..   .+.+.......+.+..|+|||+|..
T Consensus       110 ~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~i  141 (328)
T d1g6q1_         110 ISEWMGYFLLYESMMDTVLYARDHYLVEGGLI  141 (328)
T ss_dssp             EECCCBTTBSTTCCHHHHHHHHHHHEEEEEEE
T ss_pred             EEEecceeeccchhHHHHHHHHHhccCCCeEE
Confidence            9854   4455556778888888998887643

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=5.8e-14  Score=121.97  Aligned_cols=107  Identities=15%  Similarity=0.148  Sum_probs=75.5

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCC-------------------------
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTS-------------------------  219 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~-------------------------  219 (319)
                      .++.+|||||||+|.++..++..+. .+|+|+|+|+.+++.|+++++..+.....                         
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~~~-~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR  128 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCHhHHHHhcccc-CcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence            4677999999999998777766543 47999999999999999988653210000                         


Q ss_pred             -Ce-EEEE----cCCCCCCCCCCCccEEEecccccCCC----CHHHHHHHHHHhhcCCCeeEE
Q 020988          220 -NL-ALVR----ADVCRLPFASGFVDAVHAGAALHCWP----SPSNAASVFSSSYSLLSICYL  272 (319)
Q Consensus       220 -~i-~~~~----~d~~~lp~~~~~fD~V~~~~vl~h~~----d~~~~l~el~rvlk~g~~~g~  272 (319)
                       .+ ....    .+....++..++||+|++.+++||+.    ++..+++++.++|||||.+-+
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~  191 (257)
T d2a14a1         129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVT  191 (257)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEE
Confidence             00 1111    12223466788999999999999996    345677888888887764433

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.37  E-value=2e-12  Score=109.50  Aligned_cols=106  Identities=12%  Similarity=0.088  Sum_probs=86.9

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (319)
                      ...+.+.+...++.+|||||||+|+.+..+++.. ..+|+++|.++.+++.|+++++..   ...|+.++.+|.......
T Consensus        67 ~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~-g~~V~~ie~~~~l~~~a~~~l~~~---g~~nv~~~~gd~~~g~~~  142 (215)
T d1jg1a_          67 VAIMLEIANLKPGMNILEVGTGSGWNAALISEIV-KTDVYTIERIPELVEFAKRNLERA---GVKNVHVILGDGSKGFPP  142 (215)
T ss_dssp             HHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHH-CSCEEEEESCHHHHHHHHHHHHHT---TCCSEEEEESCGGGCCGG
T ss_pred             HHHHHHhhccCccceEEEecCCCChhHHHHHHhh-CceeEEEeccHHHHHHHHHHHHHc---CCceeEEEECccccCCcc
Confidence            3566777888999999999999999999888763 137999999999999999999886   367999999999876556


Q ss_pred             CCCccEEEecccccCCCCHHHHHHHHHHhhcCCCee
Q 020988          235 SGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSIC  270 (319)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~  270 (319)
                      .++||.|++..+++++|+.      +...|++||..
T Consensus       143 ~~pfD~Iiv~~a~~~ip~~------l~~qL~~gGrL  172 (215)
T d1jg1a_         143 KAPYDVIIVTAGAPKIPEP------LIEQLKIGGKL  172 (215)
T ss_dssp             GCCEEEEEECSBBSSCCHH------HHHTEEEEEEE
T ss_pred             cCcceeEEeecccccCCHH------HHHhcCCCCEE
Confidence            7899999999999988643      44445555544

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.36  E-value=2.6e-12  Score=109.74  Aligned_cols=107  Identities=12%  Similarity=0.100  Sum_probs=87.8

Q ss_pred             hhccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC---CCCCCC
Q 020988          162 FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL---PFASGF  237 (319)
Q Consensus       162 l~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l---p~~~~~  237 (319)
                      +...||.+|||+|||+|.++..+++. |+..+|+|+|+|+.+++.++++.+.     ..++..+..|....   +.....
T Consensus        69 l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~-----~~~~~~i~~d~~~~~~~~~~~~~  143 (227)
T d1g8aa_          69 FPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE-----RRNIVPILGDATKPEEYRALVPK  143 (227)
T ss_dssp             CCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS-----CTTEEEEECCTTCGGGGTTTCCC
T ss_pred             cccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHh-----cCCceEEEEECCCcccccccccc
Confidence            35679999999999999999999987 6777999999999999999998765     35788888887553   334467


Q ss_pred             ccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          238 VDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       238 fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      +|+|++  .+.|..++..+++++.++|||+|.+.+.+.
T Consensus       144 vD~i~~--d~~~~~~~~~~l~~~~~~LkpgG~lvi~~k  179 (227)
T d1g8aa_         144 VDVIFE--DVAQPTQAKILIDNAEVYLKRGGYGMIAVK  179 (227)
T ss_dssp             EEEEEE--CCCSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eEEEEE--EccccchHHHHHHHHHHhcccCCeEEEEEE
Confidence            888876  466777888899999999999987766655

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.33  E-value=3.8e-12  Score=114.19  Aligned_cols=102  Identities=15%  Similarity=0.206  Sum_probs=81.8

Q ss_pred             ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (319)
                      ..++.+|||||||+|.++..+++.|. .+|+|+|.|+. ...+++..+.++  ...++.++.+|+.+++++.++||+|++
T Consensus        31 ~~~~~~VLDiGcG~G~ls~~aa~~Ga-~~V~avd~s~~-~~~a~~~~~~n~--~~~~v~~~~~~~~~~~~~~~~~D~ivs  106 (316)
T d1oria_          31 LFKDKVVLDVGSGTGILCMFAAKAGA-RKVIGIECSSI-SDYAVKIVKANK--LDHVVTIIKGKVEEVELPVEKVDIIIS  106 (316)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECSTT-HHHHHHHHHHTT--CTTTEEEEESCTTTCCCSSSCEEEEEE
T ss_pred             cCCcCEEEEEecCCcHHHHHHHHhCC-CEEEEEcCcHH-HhhhhhHHHHhC--CccccceEeccHHHcccccceeEEEee
Confidence            34689999999999999999999874 47999999985 466666665543  456799999999999998899999998


Q ss_pred             cccccCC---CCHHHHHHHHHHhhcCCCe
Q 020988          244 GAALHCW---PSPSNAASVFSSSYSLLSI  269 (319)
Q Consensus       244 ~~vl~h~---~d~~~~l~el~rvlk~g~~  269 (319)
                      ....+++   .....++..+.++|||+|.
T Consensus       107 ~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~  135 (316)
T d1oria_         107 EWMGYCLFYESMLNTVLHARDKWLAPDGL  135 (316)
T ss_dssp             CCCBBTBTBTCCHHHHHHHHHHHEEEEEE
T ss_pred             eeeeeeeccHHHHHHHHHHHHhcCCCCeE
Confidence            6554444   4567888889999887753

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.2e-11  Score=110.71  Aligned_cols=108  Identities=18%  Similarity=0.216  Sum_probs=82.0

Q ss_pred             HHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCC
Q 020988          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF  237 (319)
Q Consensus       158 l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~  237 (319)
                      +.+.....++.+|||||||+|.++..+++.|. .+|+|+|.|+.+.. +++....++  ...++.++.+|+.++++++++
T Consensus        27 i~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga-~~V~aid~s~~~~~-a~~~~~~~~--~~~~i~~~~~~~~~l~~~~~~  102 (311)
T d2fyta1          27 IYQNPHIFKDKVVLDVGCGTGILSMFAAKAGA-KKVLGVDQSEILYQ-AMDIIRLNK--LEDTITLIKGKIEEVHLPVEK  102 (311)
T ss_dssp             HHHCGGGTTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEESSTHHHH-HHHHHHHTT--CTTTEEEEESCTTTSCCSCSC
T ss_pred             HHhccccCCcCEEEEECCCCCHHHHHHHHcCC-CEEEEEeCHHHHHH-HHHHHHHhC--CCccceEEEeeHHHhcCcccc
Confidence            33334456789999999999999999999875 58999999998765 444444432  457899999999999988899


Q ss_pred             ccEEEecccccCCCC---HHHHHHHHHHhhcCCCe
Q 020988          238 VDAVHAGAALHCWPS---PSNAASVFSSSYSLLSI  269 (319)
Q Consensus       238 fD~V~~~~vl~h~~d---~~~~l~el~rvlk~g~~  269 (319)
                      ||+|++....+++..   +...+....++|||+|.
T Consensus       103 ~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~  137 (311)
T d2fyta1         103 VDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGS  137 (311)
T ss_dssp             EEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEE
T ss_pred             ceEEEEeeeeeecccccccHHHHHHHHhcCCCCcE
Confidence            999999765555532   34556666778777653

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=2.1e-12  Score=112.89  Aligned_cols=114  Identities=16%  Similarity=0.133  Sum_probs=75.8

Q ss_pred             HHHHHhh--ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCC----------------
Q 020988          157 MAQEYFK--SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILT----------------  218 (319)
Q Consensus       157 ~l~~~l~--~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~----------------  218 (319)
                      .+.+.+.  ...+.+|||||||+|.+....+... ..+|+|+|+|+.|++.+++++........                
T Consensus        43 ~~~~~f~~g~~~g~~vLDiGcG~g~~~~~~~~~~-~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  121 (263)
T d2g72a1          43 CLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSH-FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGE  121 (263)
T ss_dssp             HHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGG-CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCC
T ss_pred             HHHHHcCCCCCCCcEEEEeccCCCHHHHHHhccc-CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccc
Confidence            4444442  3467899999999998764444332 23899999999999999988754310000                


Q ss_pred             -----------CCeEEEEcCCCC------CCCCCCCccEEEecccccCCC----CHHHHHHHHHHhhcCCCeeE
Q 020988          219 -----------SNLALVRADVCR------LPFASGFVDAVHAGAALHCWP----SPSNAASVFSSSYSLLSICY  271 (319)
Q Consensus       219 -----------~~i~~~~~d~~~------lp~~~~~fD~V~~~~vl~h~~----d~~~~l~el~rvlk~g~~~g  271 (319)
                                 ........|+..      .+...++||+|++.++|||+.    +...+++++.++|||||.+-
T Consensus       122 ~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li  195 (263)
T d2g72a1         122 CWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLL  195 (263)
T ss_dssp             CHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             hhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEE
Confidence                       011234455543      234457899999999999985    34566777777777776543

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.21  E-value=3.3e-11  Score=102.51  Aligned_cols=108  Identities=20%  Similarity=0.281  Sum_probs=81.3

Q ss_pred             HHHHHh--hccCCCeEEEEcCCcChHHHHHHhhC------CCCeEEEEeCCHHHHHHHHHHHhhcCc--cCCCCeEEEEc
Q 020988          157 MAQEYF--KSAQGGLLVDVSCGSGLFSRKFAKSG------TYSGVVALDFSENMLRQCYDFIKQDNT--ILTSNLALVRA  226 (319)
Q Consensus       157 ~l~~~l--~~~~~~~VLDiGcG~G~~~~~l~~~g------~~~~v~gvD~s~~~l~~a~~~~~~~~~--~~~~~i~~~~~  226 (319)
                      .+.+.+  ...++.+|||||||+|+++..+++..      +..+|+++|.++++++.|++++...+.  ....++.++.+
T Consensus        69 ~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~  148 (223)
T d1r18a_          69 FALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEG  148 (223)
T ss_dssp             HHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEES
T ss_pred             HHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEec
Confidence            344454  56789999999999999998887652      224899999999999999987644210  02358999999


Q ss_pred             CCCCCCCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCee
Q 020988          227 DVCRLPFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSIC  270 (319)
Q Consensus       227 d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~  270 (319)
                      |..+.....++||.|++..+++++++      .+.+.||+||..
T Consensus       149 d~~~~~~~~~~fD~Iiv~~a~~~~p~------~l~~~Lk~gG~l  186 (223)
T d1r18a_         149 DGRKGYPPNAPYNAIHVGAAAPDTPT------ELINQLASGGRL  186 (223)
T ss_dssp             CGGGCCGGGCSEEEEEECSCBSSCCH------HHHHTEEEEEEE
T ss_pred             ccccccccccceeeEEEEeechhchH------HHHHhcCCCcEE
Confidence            99886666789999999999998864      245555555444

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.15  E-value=4.5e-11  Score=99.24  Aligned_cols=116  Identities=13%  Similarity=0.185  Sum_probs=92.5

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC---
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---  232 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---  232 (319)
                      +.+.+++.+.+++.+||++||+|..+..+++..++.+|+|+|.++.|++.|+++++..    ..++.++.+++.++.   
T Consensus        13 ~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~----~~r~~~~~~~f~~~~~~~   88 (192)
T d1m6ya2          13 REVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEF----SDRVSLFKVSYREADFLL   88 (192)
T ss_dssp             HHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGG----TTTEEEEECCGGGHHHHH
T ss_pred             HHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccc----cccccchhHHHhhHHHHH
Confidence            4556777888999999999999999999999988889999999999999999998764    468999999987753   


Q ss_pred             --CCCCCccEEEecccc---------cCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          233 --FASGFVDAVHAGAAL---------HCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       233 --~~~~~fD~V~~~~vl---------~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                        +..++||.|+.-..+         ..+......+....++++++|...++.|
T Consensus        89 ~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f  142 (192)
T d1m6ya2          89 KTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISF  142 (192)
T ss_dssp             HHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEES
T ss_pred             HHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecc
Confidence              446799999875443         1222334566777778888887777766

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.15  E-value=1e-10  Score=97.23  Aligned_cols=72  Identities=18%  Similarity=0.278  Sum_probs=61.6

Q ss_pred             hccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEE
Q 020988          163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH  242 (319)
Q Consensus       163 ~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~  242 (319)
                      ....|.+|||+|||+|.++..++..+. .+|+|+|+++.+++.|+++.        .++.++++|+.+++   +.||+|+
T Consensus        45 ~dl~Gk~VLDlGcGtG~l~i~a~~~ga-~~V~~vDid~~a~~~ar~N~--------~~~~~~~~D~~~l~---~~fD~Vi  112 (197)
T d1ne2a_          45 GNIGGRSVIDAGTGNGILACGSYLLGA-ESVTAFDIDPDAIETAKRNC--------GGVNFMVADVSEIS---GKYDTWI  112 (197)
T ss_dssp             TSSBTSEEEEETCTTCHHHHHHHHTTB-SEEEEEESCHHHHHHHHHHC--------TTSEEEECCGGGCC---CCEEEEE
T ss_pred             CCCCCCEEEEeCCCCcHHHHHHHHcCC-CcccccccCHHHHHHHHHcc--------ccccEEEEehhhcC---CcceEEE
Confidence            445789999999999999988888774 47999999999999999875        47889999998875   6899999


Q ss_pred             eccc
Q 020988          243 AGAA  246 (319)
Q Consensus       243 ~~~v  246 (319)
                      ++--
T Consensus       113 ~NPP  116 (197)
T d1ne2a_         113 MNPP  116 (197)
T ss_dssp             ECCC
T ss_pred             eCcc
Confidence            9743

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.14  E-value=3.6e-11  Score=110.57  Aligned_cols=115  Identities=6%  Similarity=-0.018  Sum_probs=83.4

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCc------cCCCCeEE-EEcC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT------ILTSNLAL-VRAD  227 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~------~~~~~i~~-~~~d  227 (319)
                      ...+.+.+...++.+|||||||+|.++..++...+..+++|+|+|+.+++.|+++.+..+.      .....+.+ ..++
T Consensus       205 i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~  284 (406)
T d1u2za_         205 LSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKS  284 (406)
T ss_dssp             HHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSC
T ss_pred             HHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeec
Confidence            4556666778899999999999999999999886556899999999999999988764210      01122333 3444


Q ss_pred             CCCCCCC---CCCccEEEecccccCCCCHHHHHHHHHHhhcCCCee
Q 020988          228 VCRLPFA---SGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSIC  270 (319)
Q Consensus       228 ~~~lp~~---~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~  270 (319)
                      +...+..   -..+|+|++.. +.|.++....++++.++|||||..
T Consensus       285 f~~~~~~d~~~~~adVV~inn-~~f~~~l~~~L~ei~r~LKPGGrI  329 (406)
T d1u2za_         285 FVDNNRVAELIPQCDVILVNN-FLFDEDLNKKVEKILQTAKVGCKI  329 (406)
T ss_dssp             STTCHHHHHHGGGCSEEEECC-TTCCHHHHHHHHHHHTTCCTTCEE
T ss_pred             hhhccccccccccceEEEEec-ccCchHHHHHHHHHHHhcCCCcEE
Confidence            4443311   13567888754 567778889999999999998864

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.13  E-value=4.3e-10  Score=98.21  Aligned_cols=77  Identities=13%  Similarity=0.187  Sum_probs=67.6

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (319)
                      ..+.+|||+|||+|..+..++...++.+|+++|+|+.+++.|+++++..+   ..++.++++|..+ ++.+++||+|+++
T Consensus       107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~---~~~v~~~~~d~~~-~~~~~~fDlIvsN  182 (274)
T d2b3ta1         107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLA---IKNIHILQSDWFS-ALAGQQFAMIVSN  182 (274)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHT---CCSEEEECCSTTG-GGTTCCEEEEEEC
T ss_pred             ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhC---cccceeeeccccc-ccCCCceeEEEec
Confidence            45678999999999999999999999999999999999999999998763   4579999999866 4556799999997


Q ss_pred             c
Q 020988          245 A  245 (319)
Q Consensus       245 ~  245 (319)
                      -
T Consensus       183 P  183 (274)
T d2b3ta1         183 P  183 (274)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.09  E-value=4.7e-10  Score=97.41  Aligned_cols=99  Identities=17%  Similarity=0.134  Sum_probs=80.6

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (319)
                      .++.+|||+|||+|.++..+++.+ ..+|+++|+++.+++.++++++.++  ...+++++.+|+.+++. ++.||.|++.
T Consensus       106 ~~g~~VlD~~aG~G~~~l~~a~~~-~~~V~avd~n~~a~~~~~~N~~~n~--l~~~v~~~~~D~~~~~~-~~~~D~Ii~~  181 (260)
T d2frna1         106 KPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNK--VEDRMSAYNMDNRDFPG-ENIADRILMG  181 (260)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTT--CTTTEEEECSCTTTCCC-CSCEEEEEEC
T ss_pred             CCccEEEECcceEcHHHHHHHHhC-CcEEEEecCCHHHHHHHHHHHHHhC--CCceEEEEEcchHHhcc-CCCCCEEEEC
Confidence            578999999999999999999886 3589999999999999999998764  34579999999988764 5789999875


Q ss_pred             ccccCCCCHHHHHHHHHHhhcCCCeeE
Q 020988          245 AALHCWPSPSNAASVFSSSYSLLSICY  271 (319)
Q Consensus       245 ~vl~h~~d~~~~l~el~rvlk~g~~~g  271 (319)
                      .    .+.....+.++.+++++||..-
T Consensus       182 ~----p~~~~~~l~~a~~~l~~gG~lh  204 (260)
T d2frna1         182 Y----VVRTHEFIPKALSIAKDGAIIH  204 (260)
T ss_dssp             C----CSSGGGGHHHHHHHEEEEEEEE
T ss_pred             C----CCchHHHHHHHHhhcCCCCEEE
Confidence            2    2344566778888888876543

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.07  E-value=5.7e-10  Score=93.24  Aligned_cols=78  Identities=15%  Similarity=0.291  Sum_probs=65.4

Q ss_pred             hhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEE
Q 020988          162 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV  241 (319)
Q Consensus       162 l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V  241 (319)
                      .....|.+|||+|||+|.++..++..+. .+|+|+|+|+.+++.++++++..    ..+..++.+|+..+   ++.||+|
T Consensus        42 ~~dl~g~~vLDlg~GtG~l~i~a~~~g~-~~v~~vdi~~~~~~~a~~N~~~~----~~~~~~~~~d~~~~---~~~fD~V  113 (201)
T d1wy7a1          42 LGDIEGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEF----KGKFKVFIGDVSEF---NSRVDIV  113 (201)
T ss_dssp             TTSSTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGG----TTSEEEEESCGGGC---CCCCSEE
T ss_pred             cCCCCCCEEEECcCcchHHHHHHHHcCC-CEEEEEcCcHHHHHHHHHHHHHc----CCCceEEECchhhh---CCcCcEE
Confidence            3445789999999999999998888764 58999999999999999998764    46788999998775   4689999


Q ss_pred             Eecccc
Q 020988          242 HAGAAL  247 (319)
Q Consensus       242 ~~~~vl  247 (319)
                      +++--.
T Consensus       114 i~nPP~  119 (201)
T d1wy7a1         114 IMNPPF  119 (201)
T ss_dssp             EECCCC
T ss_pred             EEcCcc
Confidence            997544

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.99  E-value=7.9e-10  Score=88.17  Aligned_cols=109  Identities=17%  Similarity=0.188  Sum_probs=79.4

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-CCCCCCccEEEe
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PFASGFVDAVHA  243 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~~~~~fD~V~~  243 (319)
                      -.+.+|||+|||+|.++..++.+|. .+|+++|.++.+++.++++++..+  ...+++++++|+... +...++||+|++
T Consensus        13 ~~g~~vlDl~~GtG~~~iea~~rga-~~v~~ve~~~~a~~~~~~n~~~~~--~~~~~~ii~~D~~~~l~~~~~~fDiIf~   89 (152)
T d2esra1          13 FNGGRVLDLFAGSGGLAIEAVSRGM-SAAVLVEKNRKAQAIIQDNIIMTK--AENRFTLLKMEAERAIDCLTGRFDLVFL   89 (152)
T ss_dssp             CCSCEEEEETCTTCHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHHTTT--CGGGEEEECSCHHHHHHHBCSCEEEEEE
T ss_pred             CCCCeEEEcCCccCHHHHHHHHhCc-ceeeeehhchhhhhhhhhhhhhcc--cccchhhhcccccccccccccccceeEe
Confidence            4689999999999999999988875 599999999999999999988753  345699999998763 445689999988


Q ss_pred             cccccCCCCHHHHHHHHHHhhcCCCeeEEEEeecc
Q 020988          244 GAALHCWPSPSNAASVFSSSYSLLSICYLLQFRYT  278 (319)
Q Consensus       244 ~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~~~  278 (319)
                      .--.. .......+..+.. .+.+.++|+++++..
T Consensus        90 DPPy~-~~~~~~~l~~i~~-~~~L~~~g~iiiE~~  122 (152)
T d2esra1          90 DPPYA-KETIVATIEALAA-KNLLSEQVMVVCETD  122 (152)
T ss_dssp             CCSSH-HHHHHHHHHHHHH-TTCEEEEEEEEEEEE
T ss_pred             chhhc-cchHHHHHHHHHH-CCCcCCCeEEEEEeC
Confidence            53211 1111233333332 245677888887543

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=98.96  E-value=2.9e-10  Score=101.71  Aligned_cols=79  Identities=23%  Similarity=0.221  Sum_probs=65.7

Q ss_pred             hhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC----CCCCCC
Q 020988          162 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PFASGF  237 (319)
Q Consensus       162 l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l----p~~~~~  237 (319)
                      ....++.+|||++||+|.++.+++..+.  +|+++|+|+.+++.|+++++.++   ..+++++++|+.+.    +...++
T Consensus       141 ~~~~~g~rVLDl~~gtG~~s~~~a~g~~--~V~~vD~s~~al~~a~~n~~~ng---l~~~~~i~~d~~~~~~~~~~~~~~  215 (318)
T d1wxxa2         141 MERFRGERALDVFSYAGGFALHLALGFR--EVVAVDSSAEALRRAEENARLNG---LGNVRVLEANAFDLLRRLEKEGER  215 (318)
T ss_dssp             GGGCCEEEEEEETCTTTHHHHHHHHHEE--EEEEEESCHHHHHHHHHHHHHTT---CTTEEEEESCHHHHHHHHHHTTCC
T ss_pred             HHHhCCCeeeccCCCCcHHHHHHHhcCC--cEEeecchHHHHHHHHHHHHHcC---CCCcceeeccHHHHhhhhHhhhcC
Confidence            3345789999999999999999887655  99999999999999999998864   46899999998653    344679


Q ss_pred             ccEEEecc
Q 020988          238 VDAVHAGA  245 (319)
Q Consensus       238 fD~V~~~~  245 (319)
                      ||+|++.-
T Consensus       216 fD~Vi~Dp  223 (318)
T d1wxxa2         216 FDLVVLDP  223 (318)
T ss_dssp             EEEEEECC
T ss_pred             CCEEEEcC
Confidence            99999853

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=98.95  E-value=1.3e-09  Score=88.69  Aligned_cols=104  Identities=13%  Similarity=0.077  Sum_probs=72.1

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC----CCCCCCCccE
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR----LPFASGFVDA  240 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~----lp~~~~~fD~  240 (319)
                      .++.+|||+|||+|.++..++..|.  +++++|.|+.+++.++++++..+    ...++...+...    .....++||+
T Consensus        40 ~~g~~vLDl~~G~G~~~i~a~~~ga--~vv~vD~~~~a~~~~~~N~~~~~----~~~~v~~~~~d~~~~~~~~~~~~fD~  113 (171)
T d1ws6a1          40 PRRGRFLDPFAGSGAVGLEAASEGW--EAVLVEKDPEAVRLLKENVRRTG----LGARVVALPVEVFLPEAKAQGERFTV  113 (171)
T ss_dssp             TTCCEEEEETCSSCHHHHHHHHTTC--EEEEECCCHHHHHHHHHHHHHHT----CCCEEECSCHHHHHHHHHHTTCCEEE
T ss_pred             cCCCeEEEeccccchhhhhhhhccc--hhhhcccCHHHHhhhhHHHHhhc----cccceeeeehhcccccccccCCccce
Confidence            5688999999999999999999876  89999999999999999988753    222444444322    2234578999


Q ss_pred             EEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEeec
Q 020988          241 VHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFRY  277 (319)
Q Consensus       241 V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~~  277 (319)
                      |++.--.. . +....+.++.. .+.+.++|+++++.
T Consensus       114 If~DPPY~-~-~~~~~l~~l~~-~~ll~~~g~ivie~  147 (171)
T d1ws6a1         114 AFMAPPYA-M-DLAALFGELLA-SGLVEAGGLYVLQH  147 (171)
T ss_dssp             EEECCCTT-S-CTTHHHHHHHH-HTCEEEEEEEEEEE
T ss_pred             eEEccccc-c-CHHHHHHHHHH-cCCcCCCeEEEEEe
Confidence            99854322 2 22334444433 23466777777753

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.94  E-value=8.8e-10  Score=94.82  Aligned_cols=97  Identities=16%  Similarity=0.147  Sum_probs=78.8

Q ss_pred             CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecc
Q 020988          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (319)
Q Consensus       166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (319)
                      ...+|||||||+|.++..+++..|..++++.|+ +..++.+.         ...+++++.+|+.+ +.+  .+|++++.+
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~---------~~~rv~~~~gD~f~-~~p--~aD~~~l~~  146 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLS---------GSNNLTYVGGDMFT-SIP--NADAVLLKY  146 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC---------CBTTEEEEECCTTT-CCC--CCSEEEEES
T ss_pred             CceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhCc---------ccCceEEEecCccc-CCC--CCcEEEEEe
Confidence            347899999999999999999999999999998 44443321         34799999999976 333  579999999


Q ss_pred             cccCCCCHH--HHHHHHHHhhcCCCeeEEEEe
Q 020988          246 ALHCWPSPS--NAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       246 vl~h~~d~~--~~l~el~rvlk~g~~~g~~~~  275 (319)
                      +||+++|.+  +.++.+++.++|++..+.+++
T Consensus       147 vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli  178 (244)
T d1fp2a2         147 ILHNWTDKDCLRILKKCKEAVTNDGKRGKVTI  178 (244)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEE
T ss_pred             ecccCChHHHHHHHHHHHHHcCcccCCcEEEE
Confidence            999998765  678889999999987665544

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.94  E-value=7.9e-10  Score=95.08  Aligned_cols=95  Identities=19%  Similarity=0.143  Sum_probs=72.5

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (319)
                      ....+|||||||+|.++..+++..|..+++..|+ +..++.+.         ...+++++.+|+.+ +.+  ..|+|++.
T Consensus        80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~---------~~~ri~~~~gd~~~-~~p--~~D~~~l~  146 (244)
T d1fp1d2          80 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAP---------PLSGIEHVGGDMFA-SVP--QGDAMILK  146 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC---------CCTTEEEEECCTTT-CCC--CEEEEEEE
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhccC---------CCCCeEEecCCccc-ccc--cceEEEEe
Confidence            4568999999999999999999999999999998 44443211         35789999999865 333  45999999


Q ss_pred             ccccCCCCHH--HHHHHHHHhhcCCCeeEE
Q 020988          245 AALHCWPSPS--NAASVFSSSYSLLSICYL  272 (319)
Q Consensus       245 ~vl~h~~d~~--~~l~el~rvlk~g~~~g~  272 (319)
                      ++||+++|.+  ..++.+++.++|++..-+
T Consensus       147 ~vLh~~~de~~~~iL~~~~~aL~pgg~llI  176 (244)
T d1fp1d2         147 AVCHNWSDEKCIEFLSNCHKALSPNGKVII  176 (244)
T ss_dssp             SSGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             hhhhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence            9999997644  556667777666554333

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=98.85  E-value=1.8e-08  Score=82.59  Aligned_cols=117  Identities=9%  Similarity=0.081  Sum_probs=85.2

Q ss_pred             HHHHHHhh-ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-CC
Q 020988          156 KMAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PF  233 (319)
Q Consensus       156 ~~l~~~l~-~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~  233 (319)
                      +.+...+. ...+.+|||++||+|.++.+++.+|. .+|+.||.++.+++.++++++..   ...++.++.+|+... ..
T Consensus        32 e~lfn~l~~~~~~~~vLDlfaGsG~~giealsrGa-~~v~~VE~~~~a~~~~k~N~~~~---~~~~~~ii~~d~~~~l~~  107 (183)
T d2fpoa1          32 ETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATL---KAGNARVVNSNAMSFLAQ  107 (183)
T ss_dssp             HHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHT---TCCSEEEECSCHHHHHSS
T ss_pred             HHHHhhhhcccchhhhhhhhccccceeeeEEecCc-ceeEEEEEeechhhHHHHHHhhc---cccceeeeeecccccccc
Confidence            33444443 24678999999999999999999885 58999999999999999998765   356889999987653 34


Q ss_pred             CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEeecc
Q 020988          234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFRYT  278 (319)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~~~  278 (319)
                      .+.+||+|++.--... ......+..+.+ .+.+.+.++++++..
T Consensus       108 ~~~~fDlIf~DPPY~~-~~~~~~l~~l~~-~~~L~~~~iIiiE~~  150 (183)
T d2fpoa1         108 KGTPHNIVFVDPPFRR-GLLEETINLLED-NGWLADEALIYVESE  150 (183)
T ss_dssp             CCCCEEEEEECCSSST-TTHHHHHHHHHH-TTCEEEEEEEEEEEE
T ss_pred             cccccCEEEEcCcccc-chHHHHHHHHHH-CCCCCCCeEEEEEec
Confidence            5678999999754332 234455554443 244677788888644

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.85  E-value=9.4e-09  Score=86.47  Aligned_cols=116  Identities=10%  Similarity=0.195  Sum_probs=85.3

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-
Q 020988          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-  231 (319)
Q Consensus       154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-  231 (319)
                      .-+.+..++...++.+|||||||+|..+..+++.. .+.+++++|.++.+.+.|+++++..+  ...+++++.+|..+. 
T Consensus        44 ~G~lL~~lv~~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~g--l~~~i~l~~Gd~~e~l  121 (214)
T d2cl5a1          44 KGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAG--LQDKVTILNGASQDLI  121 (214)
T ss_dssp             HHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHT--CGGGEEEEESCHHHHG
T ss_pred             HHHHHHHHHHhhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcC--CCccceeeeccccccc
Confidence            34566666666677899999999999999998864 35799999999999999999987754  346799999998653 


Q ss_pred             C-----CCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          232 P-----FASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       232 p-----~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      +     +..++||+|++-+    ..+.......+...++.++++|++++
T Consensus       122 ~~l~~~~~~~~~D~ifiD~----~~~~~~~~~~l~~~~~lLkpGGvIv~  166 (214)
T d2cl5a1         122 PQLKKKYDVDTLDMVFLDH----WKDRYLPDTLLLEKCGLLRKGTVLLA  166 (214)
T ss_dssp             GGHHHHSCCCCEEEEEECS----CGGGHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             cchhhcccccccceeeecc----cccccccHHHHHHHhCccCCCcEEEE
Confidence            2     3457899998753    32322223345555566667777776

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.85  E-value=4.5e-09  Score=94.05  Aligned_cols=78  Identities=18%  Similarity=0.221  Sum_probs=65.1

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC----CCCCCCCccE
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR----LPFASGFVDA  240 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~----lp~~~~~fD~  240 (319)
                      .++.+|||+|||+|.++..++..|. .+|+++|+|+.+++.++++++.++  ...+++++++|+.+    ++....+||+
T Consensus       144 ~~g~~VLDl~~g~G~~si~~a~~ga-~~V~~vD~s~~al~~a~~N~~~ng--l~~~~~~~~~d~~~~~~~~~~~~~~fD~  220 (324)
T d2as0a2         144 QPGDRVLDVFTYTGGFAIHAAIAGA-DEVIGIDKSPRAIETAKENAKLNG--VEDRMKFIVGSAFEEMEKLQKKGEKFDI  220 (324)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTT--CGGGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             CCCCeeecccCcccchhhhhhhcCC-cEEEeecCCHHHHHHHHHHHHHcC--CCccceeeechhhhhhHHHHhccCCCCc
Confidence            4689999999999999999988864 589999999999999999998864  23578999999865    2335679999


Q ss_pred             EEecc
Q 020988          241 VHAGA  245 (319)
Q Consensus       241 V~~~~  245 (319)
                      |++.-
T Consensus       221 Vi~Dp  225 (324)
T d2as0a2         221 VVLDP  225 (324)
T ss_dssp             EEECC
T ss_pred             hhcCC
Confidence            99853

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.82  E-value=7.9e-09  Score=88.11  Aligned_cols=88  Identities=10%  Similarity=0.214  Sum_probs=70.4

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (319)
                      .+.+.+.+...++.+|||||||+|.++..+++.+.  +|+++|+++.+++..+++...     .+++.++.+|+.+++++
T Consensus        10 ~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~--~v~avE~D~~l~~~l~~~~~~-----~~n~~i~~~D~l~~~~~   82 (235)
T d1qama_          10 IDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCN--FVTAIEIDHKLCKTTENKLVD-----HDNFQVLNKDILQFKFP   82 (235)
T ss_dssp             HHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEECSCHHHHHHHHHHTTT-----CCSEEEECCCGGGCCCC
T ss_pred             HHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCcC--ceEEEeeccchHHHHHHHhhc-----ccchhhhhhhhhhcccc
Confidence            45556666677899999999999999999999876  999999999999999988754     46999999999988776


Q ss_pred             CCCccEEEecccccCC
Q 020988          235 SGFVDAVHAGAALHCW  250 (319)
Q Consensus       235 ~~~fD~V~~~~vl~h~  250 (319)
                      ......|+ ++.-.++
T Consensus        83 ~~~~~~vv-~NLPYnI   97 (235)
T d1qama_          83 KNQSYKIF-GNIPYNI   97 (235)
T ss_dssp             SSCCCEEE-EECCGGG
T ss_pred             ccccceee-eeehhhh
Confidence            54433444 4444455

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.76  E-value=1.2e-08  Score=90.05  Aligned_cols=117  Identities=9%  Similarity=0.010  Sum_probs=81.7

Q ss_pred             HHHHHHhh-ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC---
Q 020988          156 KMAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL---  231 (319)
Q Consensus       156 ~~l~~~l~-~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l---  231 (319)
                      +.+.+.+. ..++.+|||+.||+|.++..++..|.  +|++||.|+.+++.|+++++.++. ...+++++++|+.+.   
T Consensus       121 ~~~~~~~~~~~~~~rVLdlf~~tG~~sl~aa~~GA--~V~~VD~s~~al~~a~~N~~ln~~-~~~~~~~i~~D~~~~l~~  197 (309)
T d2igta1         121 EWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGA--EVTHVDASKKAIGWAKENQVLAGL-EQAPIRWICEDAMKFIQR  197 (309)
T ss_dssp             HHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHTC-TTSCEEEECSCHHHHHHH
T ss_pred             HHHHHHHhhccCCCeEEEecCCCcHHHHHHHhCCC--eEEEEeChHHHHHHHHHhhhhhcc-cCCcEEEEeCCHHHhHHH
Confidence            44444443 34678999999999999999998876  899999999999999999876531 124689999998653   


Q ss_pred             -CCCCCCccEEEecc---ccc------CCC-CHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          232 -PFASGFVDAVHAGA---ALH------CWP-SPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       232 -p~~~~~fD~V~~~~---vl~------h~~-d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                       ....+.||+|++.-   +-.      .+. +....++.+.+++++++.+-+...
T Consensus       198 ~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~  252 (309)
T d2igta1         198 EERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA  252 (309)
T ss_dssp             HHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred             HhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEec
Confidence             12357899999831   111      111 123344556678888776554444

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=6.2e-08  Score=83.28  Aligned_cols=82  Identities=11%  Similarity=0.064  Sum_probs=65.3

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC------CCCCCCc
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL------PFASGFV  238 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l------p~~~~~f  238 (319)
                      .+..++||+|||+|.....++...++.+++|+|+|+.+++.|+++++.++  ...++.++..+....      ...+++|
T Consensus        60 ~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~--l~~~~~~~~~~~~~~~~~~~~~~~~~~f  137 (250)
T d2h00a1          60 STLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNN--LSDLIKVVKVPQKTLLMDALKEESEIIY  137 (250)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECCTTCSSTTTSTTCCSCCB
T ss_pred             cccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhC--CCcceeeeeeccHHhhhhhhhhcccCce
Confidence            34568999999999999999888777899999999999999999998764  456788777654332      1235689


Q ss_pred             cEEEeccccc
Q 020988          239 DAVHAGAALH  248 (319)
Q Consensus       239 D~V~~~~vl~  248 (319)
                      |+|+|+--+.
T Consensus       138 D~ivsNPPY~  147 (250)
T d2h00a1         138 DFCMCNPPFF  147 (250)
T ss_dssp             SEEEECCCCC
T ss_pred             eEEEecCccc
Confidence            9999986544

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.76  E-value=8.8e-08  Score=79.04  Aligned_cols=112  Identities=13%  Similarity=0.069  Sum_probs=67.7

Q ss_pred             ccCCCeEEEEcCCcChHH----HHHHhh----CCCCeEEEEeCCHHHHHHHHHHH------------------hhcCcc-
Q 020988          164 SAQGGLLVDVSCGSGLFS----RKFAKS----GTYSGVVALDFSENMLRQCYDFI------------------KQDNTI-  216 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~----~~l~~~----g~~~~v~gvD~s~~~l~~a~~~~------------------~~~~~~-  216 (319)
                      ..+.-+|+++|||+|.-.    ..+.+.    .+..+++|+|+|+.+++.|++-.                  .+.... 
T Consensus        22 ~~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~  101 (193)
T d1af7a2          22 RHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPH  101 (193)
T ss_dssp             SCSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTS
T ss_pred             cCCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCc
Confidence            345569999999999733    333332    23357999999999999997321                  110000 


Q ss_pred             ---------CCCCeEEEEcCCCCC-CCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988          217 ---------LTSNLALVRADVCRL-PFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFR  276 (319)
Q Consensus       217 ---------~~~~i~~~~~d~~~l-p~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~  276 (319)
                               ....+.+...+.... +...+.||+|+|.+||.++.++ ...+-+.++.+.+.++|.++..
T Consensus       102 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~-~~~~vl~~l~~~L~pGG~L~lG  170 (193)
T d1af7a2         102 EGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKT-TQEDILRRFVPLLKPDGLLFAG  170 (193)
T ss_dssp             CSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHH-HHHHHHHHHGGGEEEEEEEEEC
T ss_pred             cceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHH-HHHHHHHHHHHHhCCCcEEEEe
Confidence                     001244555555443 2345789999999999999544 3333344444445555666663

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.70  E-value=4.3e-10  Score=96.68  Aligned_cols=91  Identities=11%  Similarity=0.239  Sum_probs=73.9

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (319)
                      .+.+.+.+...++.+|||||||+|.++..+++.+.  +|+++|+++.+++.+++++..     ..++.++.+|+.+++++
T Consensus        18 i~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~~--~v~aIE~D~~l~~~l~~~~~~-----~~n~~ii~~D~l~~~~~   90 (245)
T d1yuba_          18 LNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISK--QVTSIELDSHLFNLSSEKLKL-----NTRVTLIHQDILQFQFP   90 (245)
T ss_dssp             HHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSS--EEEESSSSCSSSSSSSCTTTT-----CSEEEECCSCCTTTTCC
T ss_pred             HHHHHHhcCCCCCCeEEEECCCccHHHHHHHhhcC--ceeEeeecccchhhhhhhhhh-----ccchhhhhhhhhccccc
Confidence            35666777777889999999999999999999977  999999999999888877643     46899999999999888


Q ss_pred             CCCccEEEecccccCCCCH
Q 020988          235 SGFVDAVHAGAALHCWPSP  253 (319)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~  253 (319)
                      ...++.|+++- -.|+..+
T Consensus        91 ~~~~~~vv~NL-PY~Ist~  108 (245)
T d1yuba_          91 NKQRYKIVGNI-PYHLSTQ  108 (245)
T ss_dssp             CSSEEEEEEEC-CSSSCHH
T ss_pred             cceeeeEeeee-ehhhhHH
Confidence            77777666554 4566443

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.70  E-value=7.7e-08  Score=78.66  Aligned_cols=120  Identities=13%  Similarity=0.064  Sum_probs=85.7

Q ss_pred             HHHHHHHHhh-ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-
Q 020988          154 EFKMAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-  231 (319)
Q Consensus       154 ~~~~l~~~l~-~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-  231 (319)
                      ..+.+...+. ...+.+|||+.||+|.++.+++.+|. ..|+++|.++.+++.++++++..+  ...++.++++|+.+. 
T Consensus        28 vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srGa-~~v~~ve~~~~a~~~~~~N~~~~~--~~~~~~i~~~D~~~~l  104 (182)
T d2fhpa1          28 VKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGM-DKSICIEKNFAALKVIKENIAITK--EPEKFEVRKMDANRAL  104 (182)
T ss_dssp             HHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHHT--CGGGEEEEESCHHHHH
T ss_pred             HHHHHHHHHHHhcCCCEEEEcccccccccceeeecch-hHHHHHHHHHHHHHHHHHHhhhhh--cccccccccccchhhh
Confidence            3445555554 34789999999999999999999985 589999999999999999987653  235799999998652 


Q ss_pred             ---CCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEeecc
Q 020988          232 ---PFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFRYT  278 (319)
Q Consensus       232 ---p~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~~~  278 (319)
                         .-...+||+|++.--.. ..+....+..+... +.+.++++++++..
T Consensus       105 ~~~~~~~~~fDlIflDPPY~-~~~~~~~l~~i~~~-~~L~~~giIi~E~~  152 (182)
T d2fhpa1         105 EQFYEEKLQFDLVLLDPPYA-KQEIVSQLEKMLER-QLLTNEAVIVCETD  152 (182)
T ss_dssp             HHHHHTTCCEEEEEECCCGG-GCCHHHHHHHHHHT-TCEEEEEEEEEEEE
T ss_pred             hhhcccCCCcceEEechhhh-hhHHHHHHHHHHHC-CCCCCCEEEEEEcC
Confidence               12356899999864322 23444555554331 34567788887543

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=5e-08  Score=82.11  Aligned_cols=114  Identities=12%  Similarity=0.002  Sum_probs=83.7

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-
Q 020988          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-  231 (319)
Q Consensus       154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-  231 (319)
                      .-+.+..+......++|||||||+|+-+.++++..+ +.+++.+|.+++..+.|++.++..+  ...+++++.+|+.+. 
T Consensus        47 ~g~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag--~~~~i~~~~Gda~e~l  124 (219)
T d2avda1          47 QAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAE--AEHKIDLRLKPALETL  124 (219)
T ss_dssp             HHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTT--CTTTEEEEESCHHHHH
T ss_pred             HHHHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcC--ccceEEEEEeehhhcc
Confidence            345555555666789999999999999999998743 5799999999999999999998764  456899999997552 


Q ss_pred             C-----CCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          232 P-----FASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       232 p-----~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      +     ...++||+|+..+-=+   +....++.+.++   ++++|++++
T Consensus       125 ~~~~~~~~~~~fD~ifiD~dk~---~y~~~~~~~~~l---L~~GGvii~  167 (219)
T d2avda1         125 DELLAAGEAGTFDVAVVDADKE---NCSAYYERCLQL---LRPGGILAV  167 (219)
T ss_dssp             HHHHHTTCTTCEEEEEECSCST---THHHHHHHHHHH---EEEEEEEEE
T ss_pred             hhhhhhcccCCccEEEEeCCHH---HHHHHHHHHHHH---hcCCcEEEE
Confidence            2     2357899999853211   233445555555   555666766

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.64  E-value=3.3e-08  Score=84.63  Aligned_cols=96  Identities=15%  Similarity=0.109  Sum_probs=75.7

Q ss_pred             CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecc
Q 020988          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (319)
Q Consensus       166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (319)
                      ...+|||||||+|.++..+++..|+.++++.|+.+ .++.++         ...++.++.+|+.+ +.+  ..|+++..+
T Consensus        81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~~~---------~~~r~~~~~~d~~~-~~P--~ad~~~l~~  147 (243)
T d1kyza2          81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH-VIEDAP---------SYPGVEHVGGDMFV-SIP--KADAVFMKW  147 (243)
T ss_dssp             SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT-TTTTCC---------CCTTEEEEECCTTT-CCC--CCSCEECSS
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH-hhhhcc---------cCCceEEecccccc-cCC--CcceEEEEE
Confidence            35789999999999999999999999999999955 332221         34689999999865 333  357888999


Q ss_pred             cccCCCCHH--HHHHHHHHhhcCCCeeEEEE
Q 020988          246 ALHCWPSPS--NAASVFSSSYSLLSICYLLQ  274 (319)
Q Consensus       246 vl~h~~d~~--~~l~el~rvlk~g~~~g~~~  274 (319)
                      ++|++++.+  ..++++++.++|++..-+..
T Consensus       148 vlh~~~d~~~~~iL~~~~~al~pgg~~li~d  178 (243)
T d1kyza2         148 ICHDWSDEHCLKFLKNCYEALPDNGKVIVAE  178 (243)
T ss_dssp             SSTTSCHHHHHHHHHHHHHHCCSSSCEEEEE
T ss_pred             EeecCCHHHHHHHHHHHHHhcCCCceEEEEE
Confidence            999997643  67888899999988766553

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=98.64  E-value=2.2e-08  Score=89.04  Aligned_cols=109  Identities=17%  Similarity=0.079  Sum_probs=74.9

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC----CCCCCCccE
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PFASGFVDA  240 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l----p~~~~~fD~  240 (319)
                      .++.+|||+.||+|.++..++..|. .+|+++|+|+.+++.++++++.++. ...+++++++|+.+.    .-..++||+
T Consensus       143 ~~g~~VLdlf~~~G~~sl~aa~~ga-~~V~~vD~s~~a~~~a~~N~~~n~l-~~~~~~~i~~d~~~~l~~~~~~~~~fD~  220 (317)
T d2b78a2         143 AAGKTVLNLFSYTAAFSVAAAMGGA-MATTSVDLAKRSRALSLAHFEANHL-DMANHQLVVMDVFDYFKYARRHHLTYDI  220 (317)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTTB-SEEEEEESCTTHHHHHHHHHHHTTC-CCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             hCCCceeecCCCCcHHHHHHHhCCC-ceEEEecCCHHHHHHHHHHHHHhcc-cCcceEEEEccHHHHHHHHHhhcCCCCE
Confidence            4588999999999999998877654 5799999999999999999977642 235789999998542    223568999


Q ss_pred             EEeccc-----ccCCCCHHHHHHH-HHHhhcCCCeeEEEEe
Q 020988          241 VHAGAA-----LHCWPSPSNAASV-FSSSYSLLSICYLLQF  275 (319)
Q Consensus       241 V~~~~v-----l~h~~d~~~~l~e-l~rvlk~g~~~g~~~~  275 (319)
                      |++.--     -....+..+...+ +...++.+.++|++++
T Consensus       221 Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~  261 (317)
T d2b78a2         221 IIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIA  261 (317)
T ss_dssp             EEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             EEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence            998421     1122232222222 2234444556667766

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=98.62  E-value=1.1e-07  Score=82.52  Aligned_cols=87  Identities=14%  Similarity=0.150  Sum_probs=67.8

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-CC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PF  233 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~  233 (319)
                      .+.+.......+..++||+|||+|..+..+++. ++.+|+++|+|+.+++.|+++++..+  ...++.+..+|..+. +.
T Consensus        99 v~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~-~~~~v~a~Dis~~Al~~A~~Na~~~~--~~~~~~i~~~~~~~~~~~  175 (271)
T d1nv8a_          99 VELALELIRKYGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHG--VSDRFFVRKGEFLEPFKE  175 (271)
T ss_dssp             HHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTT--CTTSEEEEESSTTGGGGG
T ss_pred             hhhhhhhhccccccEEEEeeeeeehhhhhhhhc-ccceeeechhhhhHHHHHHHHHHHcC--CCceeEEeeccccccccc
Confidence            344444444556679999999999998888764 67899999999999999999998753  345677888887663 33


Q ss_pred             CCCCccEEEec
Q 020988          234 ASGFVDAVHAG  244 (319)
Q Consensus       234 ~~~~fD~V~~~  244 (319)
                      ..+.||+|+++
T Consensus       176 ~~~~fDlIVsN  186 (271)
T d1nv8a_         176 KFASIEMILSN  186 (271)
T ss_dssp             GTTTCCEEEEC
T ss_pred             ccCcccEEEEc
Confidence            34789999997

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.49  E-value=4e-07  Score=81.02  Aligned_cols=124  Identities=10%  Similarity=0.042  Sum_probs=87.7

Q ss_pred             CCCcHHHHHHHHHH----hhccCCCeEEEEcCCcChHHHHHHhh-----CCCCeEEEEeCCHHHHHHHHHHHhhcCccCC
Q 020988          148 FPGPDEEFKMAQEY----FKSAQGGLLVDVSCGSGLFSRKFAKS-----GTYSGVVALDFSENMLRQCYDFIKQDNTILT  218 (319)
Q Consensus       148 ~~~~~~~~~~l~~~----l~~~~~~~VLDiGcG~G~~~~~l~~~-----g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~  218 (319)
                      ++.|+...+.+..+    +...++.+|||.+||+|.++..+.+.     .....++|+|+++.+++.|+.+....    .
T Consensus        95 ~~TP~~i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~----~  170 (328)
T d2f8la1          95 QMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQ----R  170 (328)
T ss_dssp             CCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHH----T
T ss_pred             EECcHHHHHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHh----h
Confidence            45677665544443    34567789999999999999888653     23347999999999999998876553    3


Q ss_pred             CCeEEEEcCCCCCCCCCCCccEEEecccccCCCCHH------------------HHHHHHHHhhcCCCeeEEEEee
Q 020988          219 SNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPS------------------NAASVFSSSYSLLSICYLLQFR  276 (319)
Q Consensus       219 ~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~------------------~~l~el~rvlk~g~~~g~~~~~  276 (319)
                      .+..+..+|..... ...+||+|+++--+.......                  ..++.+.+.|+++|..++++..
T Consensus       171 ~~~~~~~~d~~~~~-~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~  245 (328)
T d2f8la1         171 QKMTLLHQDGLANL-LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPD  245 (328)
T ss_dssp             CCCEEEESCTTSCC-CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEG
T ss_pred             hhhhhhcccccccc-ccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecC
Confidence            46677777765543 357899999986543222221                  2477778888888888887763

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.46  E-value=5.9e-07  Score=80.87  Aligned_cols=86  Identities=17%  Similarity=0.247  Sum_probs=71.8

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC--
Q 020988          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--  231 (319)
Q Consensus       154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l--  231 (319)
                      .++.+.+++...++.+|||+-||+|.++..+++.+.  +|+|+|.++.+++.|+++.+.+   ...|+.++.+|..+.  
T Consensus       200 l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~~--~V~gvE~~~~ai~~A~~na~~n---~i~n~~~~~~~~~~~~~  274 (358)
T d1uwva2         200 MVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAA--SVVGVEGVPALVEKGQQNARLN---GLQNVTFYHENLEEDVT  274 (358)
T ss_dssp             HHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSS--EEEEEESCHHHHHHHHHHHHHT---TCCSEEEEECCTTSCCS
T ss_pred             HHHHHHHhhccCCCceEEEecccccccchhcccccc--EEEeccCcHHHHHHHHHhHHhc---ccccceeeecchhhhhh
Confidence            356667777777889999999999999999998876  9999999999999999998876   467999999988663  


Q ss_pred             --CCCCCCccEEEec
Q 020988          232 --PFASGFVDAVHAG  244 (319)
Q Consensus       232 --p~~~~~fD~V~~~  244 (319)
                        +.....+|+|+..
T Consensus       275 ~~~~~~~~~d~vilD  289 (358)
T d1uwva2         275 KQPWAKNGFDKVLLD  289 (358)
T ss_dssp             SSGGGTTCCSEEEEC
T ss_pred             hhhhhhccCceEEeC
Confidence              2335679999874

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.41  E-value=1e-06  Score=74.21  Aligned_cols=110  Identities=10%  Similarity=0.034  Sum_probs=82.4

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-C
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P  232 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p  232 (319)
                      -+.+..++......+|||||+++|+-+..+++..+ +.+++.+|.+++..+.|++.+++.+  ...+++++.+++.+. +
T Consensus        48 g~~L~~L~~~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g--~~~~i~~~~g~a~~~L~  125 (227)
T d1susa1          48 GQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAG--VDHKIDFREGPALPVLD  125 (227)
T ss_dssp             HHHHHHHHHHHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTT--CGGGEEEEESCHHHHHH
T ss_pred             HHHHHHHHHhcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhc--cccceeeeehHHHHHHH
Confidence            34444455556678999999999999999997743 5799999999999999999998764  346799999998542 2


Q ss_pred             ------CCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCe
Q 020988          233 ------FASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSI  269 (319)
Q Consensus       233 ------~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~  269 (319)
                            ...++||+|+.-.-  + .+....++.+.+++++||.
T Consensus       126 ~l~~~~~~~~~fD~iFiDa~--k-~~y~~~~e~~~~ll~~gGi  165 (227)
T d1susa1         126 EMIKDEKNHGSYDFIFVDAD--K-DNYLNYHKRLIDLVKVGGV  165 (227)
T ss_dssp             HHHHCGGGTTCBSEEEECSC--S-TTHHHHHHHHHHHBCTTCC
T ss_pred             HHHhccccCCceeEEEeccc--h-hhhHHHHHHHHhhcCCCcE
Confidence                  12568999998532  1 2345666777777777753

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.36  E-value=5.3e-07  Score=79.70  Aligned_cols=109  Identities=12%  Similarity=0.040  Sum_probs=80.2

Q ss_pred             ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhc--CccCCCCeEEEEcCCCCC-CCCCCCccE
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD--NTILTSNLALVRADVCRL-PFASGFVDA  240 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~--~~~~~~~i~~~~~d~~~l-p~~~~~fD~  240 (319)
                      ...+.+||.||.|.|..+..+.+..+..+|+++|+++.+++.|++.+...  +....++++++.+|+.+. .-.+++||+
T Consensus        75 ~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv  154 (312)
T d1uira_          75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV  154 (312)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred             CCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccE
Confidence            34578999999999999999988876679999999999999999987442  122357899999998663 223578999


Q ss_pred             EEeccc--cc------CCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988          241 VHAGAA--LH------CWPSPSNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       241 V~~~~v--l~------h~~d~~~~l~el~rvlk~g~~~g~~  273 (319)
                      |++-..  ..      ++. -.++++.+++.|+++|.+...
T Consensus       155 Ii~D~~dp~~~~~~~~~L~-t~eF~~~~~~~L~p~Gvlv~~  194 (312)
T d1uira_         155 VIIDLTDPVGEDNPARLLY-TVEFYRLVKAHLNPGGVMGMQ  194 (312)
T ss_dssp             EEEECCCCBSTTCGGGGGS-SHHHHHHHHHTEEEEEEEEEE
T ss_pred             EEEeCCCcccccchhhhhh-hHHHHHHHHHhcCCCceEEEe
Confidence            996431  11      121 145678888888777765443

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.36  E-value=7.9e-07  Score=74.09  Aligned_cols=114  Identities=14%  Similarity=0.128  Sum_probs=81.1

Q ss_pred             CCcHHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcC
Q 020988          149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD  227 (319)
Q Consensus       149 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d  227 (319)
                      +.|....+.|.+++...++.+|||.|||+|.++..+.+. .....++|+|+++..+..            .....++.+|
T Consensus         2 ~TP~~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~------------~~~~~~~~~~   69 (223)
T d2ih2a1           2 ETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL------------PPWAEGILAD   69 (223)
T ss_dssp             CCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC------------CTTEEEEESC
T ss_pred             CCCHHHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh------------cccceeeeee
Confidence            356677788888888888999999999999999888765 334579999999865432            2345677888


Q ss_pred             CCCCCCCCCCccEEEecccccCCC----------------------------C-HHHHHHHHHHhhcCCCeeEEEEe
Q 020988          228 VCRLPFASGFVDAVHAGAALHCWP----------------------------S-PSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       228 ~~~lp~~~~~fD~V~~~~vl~h~~----------------------------d-~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      ...... ...||+|+++.......                            + ....++...+.++++|..+.++.
T Consensus        70 ~~~~~~-~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p  145 (223)
T d2ih2a1          70 FLLWEP-GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP  145 (223)
T ss_dssp             GGGCCC-SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hhcccc-ccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEe
Confidence            766553 47899999976443211                            0 12335566778888877777765

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.35  E-value=6.6e-07  Score=72.83  Aligned_cols=111  Identities=17%  Similarity=0.243  Sum_probs=84.2

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC---
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---  232 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---  232 (319)
                      +.+.+.+.+.+++.++|..+|.|..+..+++.+.  +|+|+|.++.+++.+++..       ..++.++.+++.++.   
T Consensus         8 ~Evl~~l~~~~g~~~vD~T~G~GGhs~~iL~~~~--~viaiD~D~~ai~~a~~~~-------~~~~~~~~~~f~~~~~~l   78 (182)
T d1wg8a2           8 QEALDLLAVRPGGVYVDATLGGAGHARGILERGG--RVIGLDQDPEAVARAKGLH-------LPGLTVVQGNFRHLKRHL   78 (182)
T ss_dssp             HHHHHHHTCCTTCEEEETTCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHTC-------CTTEEEEESCGGGHHHHH
T ss_pred             HHHHHhcCCCCCCEEEEeCCCCcHHHHHHhcccC--cEEEEhhhhhHHHHHhhcc-------ccceeEeehHHHHHHHHH
Confidence            3455677788999999999999999999999755  9999999999999998752       468999999887653   


Q ss_pred             --CCCCCccEEEecccc--cCCCCH-------HHHHHHHHHhhcCCCeeEEEEe
Q 020988          233 --FASGFVDAVHAGAAL--HCWPSP-------SNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       233 --~~~~~fD~V~~~~vl--~h~~d~-------~~~l~el~rvlk~g~~~g~~~~  275 (319)
                        ...+.+|.|+.-..+  .++.++       ...+.....+++++|...++.|
T Consensus        79 ~~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~f  132 (182)
T d1wg8a2          79 AALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAF  132 (182)
T ss_dssp             HHTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             HHcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEec
Confidence              335689999985432  222232       2345666677888887777777

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.35  E-value=6.4e-06  Score=68.13  Aligned_cols=100  Identities=19%  Similarity=0.083  Sum_probs=77.4

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (319)
                      .++.+|+|||+|.|.-+..++-..|..+++.+|.+..-+...++.....   ...|++++...++++.. +.+||+|++.
T Consensus        64 ~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L---~L~nv~v~~~R~E~~~~-~~~fD~V~sR  139 (207)
T d1jsxa_          64 LQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHEL---KLENIEPVQSRVEEFPS-EPPFDGVISR  139 (207)
T ss_dssp             CCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHT---TCSSEEEEECCTTTSCC-CSCEEEEECS
T ss_pred             hcCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHc---CCcceeeeccchhhhcc-ccccceehhh
Confidence            3568999999999999999988888899999999999888888776664   24689999999998763 5689999886


Q ss_pred             ccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          245 AALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       245 ~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      .+    .+....++-....++++   |.+++
T Consensus       140 A~----~~~~~ll~~~~~~l~~~---g~~~~  163 (207)
T d1jsxa_         140 AF----ASLNDMVSWCHHLPGEQ---GRFYA  163 (207)
T ss_dssp             CS----SSHHHHHHHHTTSEEEE---EEEEE
T ss_pred             hh----cCHHHHHHHHHHhcCCC---cEEEE
Confidence            44    35556555555555554   45544

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.33  E-value=6.5e-06  Score=66.82  Aligned_cols=120  Identities=13%  Similarity=0.128  Sum_probs=80.5

Q ss_pred             HHHHHHhhc-cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC---C
Q 020988          156 KMAQEYFKS-AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR---L  231 (319)
Q Consensus       156 ~~l~~~l~~-~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~---l  231 (319)
                      +.+...+.. ..+.+|||+-||||.++.+++.+|. ..|+.||.+...++..+++++..+. ......+...|...   .
T Consensus        32 ealFn~l~~~~~~~~vLDlFaGsG~~glEalSRGA-~~v~fVE~~~~a~~~ik~Ni~~l~~-~~~~~~~~~~d~~~~l~~  109 (183)
T d2ifta1          32 ETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKC-SSEQAEVINQSSLDFLKQ  109 (183)
T ss_dssp             HHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTC-CTTTEEEECSCHHHHTTS
T ss_pred             HHHHHHhhhhcccceEeecccCccceeeeeeeecc-eeeEEeecccchhhhHhhHHhhhcc-cccccccccccccccccc
Confidence            334444432 3678999999999999999999985 6999999999999999999876421 12245666665432   2


Q ss_pred             CCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEeeccc
Q 020988          232 PFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFRYTK  279 (319)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~~~~  279 (319)
                      .....+||+|++---... ......+..+.. .+.+.+.++++++...
T Consensus       110 ~~~~~~fDlIFlDPPY~~-~~~~~~l~~l~~-~~~L~~~~liiiE~~~  155 (183)
T d2ifta1         110 PQNQPHFDVVFLDPPFHF-NLAEQAISLLCE-NNWLKPNALIYVETEK  155 (183)
T ss_dssp             CCSSCCEEEEEECCCSSS-CHHHHHHHHHHH-TTCEEEEEEEEEEEES
T ss_pred             cccCCcccEEEechhHhh-hhHHHHHHHHHH-hCCcCCCcEEEEEecC
Confidence            334567999988644332 223344444433 2456778888886543

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=2e-06  Score=74.48  Aligned_cols=84  Identities=17%  Similarity=0.267  Sum_probs=67.7

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (319)
                      .+.+.+.+...++..|||||+|.|.++..+++.+.  +|+++|+++.+++..++++....  ...+++++.+|+...+++
T Consensus        10 ~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~~--~v~aiE~D~~l~~~L~~~~~~~~--~~~~~~~i~~D~l~~~~~   85 (278)
T d1zq9a1          10 INSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELHKRVQGTP--VASKLQVLVGDVLKTDLP   85 (278)
T ss_dssp             HHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTST--TGGGEEEEESCTTTSCCC
T ss_pred             HHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcCC--cEEEEEEccchhHHHHHHHhhhc--cccchhhhHHHHhhhhhh
Confidence            35566666777889999999999999999999986  99999999999999998875421  235899999999887654


Q ss_pred             CCCccEEEec
Q 020988          235 SGFVDAVHAG  244 (319)
Q Consensus       235 ~~~fD~V~~~  244 (319)
                        .++.|+++
T Consensus        86 --~~~~vV~N   93 (278)
T d1zq9a1          86 --FFDTCVAN   93 (278)
T ss_dssp             --CCSEEEEE
T ss_pred             --hhhhhhcc
Confidence              34566654

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.25  E-value=7e-07  Score=76.45  Aligned_cols=72  Identities=8%  Similarity=0.187  Sum_probs=61.1

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (319)
                      .+.+.+.+...++..|||||||+|.++..+++.+.  +|+++|+++.+++..+++...     .+++.++.+|+..+++
T Consensus        10 ~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~~-----~~~~~ii~~D~l~~~~   81 (252)
T d1qyra_          10 IDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLD--QLTVIELDRDLAARLQTHPFL-----GPKLTIYQQDAMTFNF   81 (252)
T ss_dssp             HHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTTCS--CEEEECCCHHHHHHHHTCTTT-----GGGEEEECSCGGGCCH
T ss_pred             HHHHHHhcCCCCCCEEEEECCCchHHHHHHHccCC--ceEEEEeccchhHHHHHHhhh-----ccchhHHhhhhhhhcc
Confidence            45666777777899999999999999999999876  999999999999999876543     3589999999988754

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.22  E-value=1.7e-06  Score=75.08  Aligned_cols=108  Identities=14%  Similarity=0.084  Sum_probs=77.0

Q ss_pred             ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCc-------cCCCCeEEEEcCCCCCCCCCC
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT-------ILTSNLALVRADVCRLPFASG  236 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~-------~~~~~i~~~~~d~~~lp~~~~  236 (319)
                      ..++.+||.||+|.|..+..+.+.. ..+|+.+|+++.+++.|++.+...+.       ...++++++.+|+...--.++
T Consensus        70 ~~~p~~vLiiG~G~G~~~~~~l~~~-~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~  148 (276)
T d1mjfa_          70 HPKPKRVLVIGGGDGGTVREVLQHD-VDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNR  148 (276)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSC-CSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCC
T ss_pred             CCCCceEEEecCCchHHHHHHHHhC-CceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccC
Confidence            4567899999999999999988764 46899999999999999987643210       125789999999865322357


Q ss_pred             CccEEEecccccCCCC-----HHHHHHHHHHhhcCCCeeEEE
Q 020988          237 FVDAVHAGAALHCWPS-----PSNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       237 ~fD~V~~~~vl~h~~d-----~~~~l~el~rvlk~g~~~g~~  273 (319)
                      +||+|++-.. .....     ..++++.+++.|+++|.....
T Consensus       149 ~yDvIi~D~~-~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q  189 (276)
T d1mjfa_         149 GFDVIIADST-DPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ  189 (276)
T ss_dssp             CEEEEEEECC-CCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCEEEEeCC-CCCCCcccccCHHHHHhhHhhcCCCceEEEe
Confidence            8999997332 11111     145678888887777755433

>d2jnya1 b.171.1.1 (A:1-59) Uncharacterized protein Cgl1405/cg1592 {Corynebacterium glutamicum [TaxId: 1718]}

class: All beta proteins
fold: Trm112p-like
superfamily: Trm112p-like
family: Trm112p-like
domain: Uncharacterized protein Cgl1405/cg1592
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=98.19  E-value=3.3e-07  Score=59.87  Aligned_cols=45  Identities=16%  Similarity=0.157  Sum_probs=37.7

Q ss_pred             ccCeeeccCCCccccccCCCCCcccceecCceeeCccCCccccCCceeeecccc
Q 020988           57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVIS  110 (319)
Q Consensus        57 ~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~~~g~~~~~~~~  110 (319)
                      ..++++||.|+++|.....         .+.+.|+.|+..|++.+|+..++.++
T Consensus         7 LL~iL~CP~ck~~L~~~~~---------~~~Lvc~~~~~~YPI~dgIPvLL~de   51 (59)
T d2jnya1           7 LLEVLACPKDKGPLRYLES---------EQLLVNERLNLAYRIDDGIPVLLIDE   51 (59)
T ss_dssp             GTCCCBCTTTCCBCEEETT---------TTEEEETTTTEEEEEETTEECCCSSC
T ss_pred             HHHHhcCCCCCCEeEEeCC---------CCEEEcCccCccccccCCccccCHHH
Confidence            4578999999999976543         26789999999999999999998654

>d2pk7a1 b.171.1.1 (A:3-61) Uncharacterized protein PFL1779 {Pseudomonas fluorescens [TaxId: 294]}

class: All beta proteins
fold: Trm112p-like
superfamily: Trm112p-like
family: Trm112p-like
domain: Uncharacterized protein PFL1779
species: Pseudomonas fluorescens [TaxId: 294]

Probab=98.13  E-value=4.5e-07  Score=59.02  Aligned_cols=45  Identities=20%  Similarity=0.416  Sum_probs=37.6

Q ss_pred             cCeeeccCCCccccccCCCCCcccceecCceeeCccCCccccCCceeeeccccC
Q 020988           58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISG  111 (319)
Q Consensus        58 ~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~~~g~~~~~~~~~  111 (319)
                      .++++||+|+++|.....         .+.+.|..|+..|++.+|++.++.+..
T Consensus         4 L~iL~CP~ck~~L~~~~~---------~~~Lvc~~~~laYPI~dGIPvlL~~eA   48 (59)
T d2pk7a1           4 LDILACPICKGPLKLSAD---------KTELISKGAGLAYPIRDGIPVMLESEA   48 (59)
T ss_dssp             GGTCCCTTTCCCCEECTT---------SSEEEETTTTEEEEEETTEECCCGGGC
T ss_pred             HhheECCCCCCcceEeCC---------CCEEecCCcCccccccCCccccCHHHh
Confidence            468999999999977543         256899999999999999999986543

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.13  E-value=4.1e-06  Score=73.11  Aligned_cols=106  Identities=8%  Similarity=0.019  Sum_probs=77.0

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcC-ccCCCCeEEEEcCCCCC-CCCCCCccEEE
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-TILTSNLALVRADVCRL-PFASGFVDAVH  242 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~-~~~~~~i~~~~~d~~~l-p~~~~~fD~V~  242 (319)
                      ..+.+||-||.|.|..++.+.+..+..+|+++|+++.+++.+++.+.... ....++++++.+|+... .-.++.||+|+
T Consensus        88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi  167 (295)
T d1inla_          88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII  167 (295)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred             CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence            45689999999999999999987666789999999999999999775421 12357999999998652 33357899999


Q ss_pred             eccc------ccCCCCHHHHHHHHHHhhcCCCeeE
Q 020988          243 AGAA------LHCWPSPSNAASVFSSSYSLLSICY  271 (319)
Q Consensus       243 ~~~v------l~h~~d~~~~l~el~rvlk~g~~~g  271 (319)
                      +-..      ..++. ..++++.+++.|+++|...
T Consensus       168 ~D~~dp~~~~~~~L~-t~efy~~~~~~L~~~Gi~v  201 (295)
T d1inla_         168 IDSTDPTAGQGGHLF-TEEFYQACYDALKEDGVFS  201 (295)
T ss_dssp             EEC----------CC-SHHHHHHHHHHEEEEEEEE
T ss_pred             EcCCCCCcCchhhhc-cHHHHHHHHhhcCCCcEEE
Confidence            7421      12232 2456777777777666543

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.13  E-value=1.1e-05  Score=73.97  Aligned_cols=145  Identities=14%  Similarity=0.086  Sum_probs=102.0

Q ss_pred             chhhHHhHHhHHHhhhh-----CCCCCcHHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCC-------------C
Q 020988          129 PFVSFLYERGWRQNFNR-----SGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-------------Y  190 (319)
Q Consensus       129 ~~~s~~~~~~w~~~~~~-----~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~-------------~  190 (319)
                      +.+...|+...++....     +.|+.|....+.+.+.+.+.++.+|+|-+||+|.++..+.+...             .
T Consensus       120 d~~g~~yE~ll~~~~~~~~k~~G~f~TP~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~  199 (425)
T d2okca1         120 DVKGAIYESILEKNGQDKKSGAGQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRD  199 (425)
T ss_dssp             HHHHHHHHHHHHHHHTCTTTCCGGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhhhccchhhccchhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhh
Confidence            34455565544432211     34889999999999999888899999999999999988766421             1


Q ss_pred             CeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecccccCCC----------------C-H
Q 020988          191 SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWP----------------S-P  253 (319)
Q Consensus       191 ~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~----------------d-~  253 (319)
                      ..+.|+|+++.+...|+-+..-.+. ......+...|....+ ....||+|+++--+....                + .
T Consensus       200 ~~l~g~E~~~~~~~la~~n~~l~g~-~~~~~~i~~~d~l~~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~  277 (425)
T d2okca1         200 KALHGVDNTPLVVTLASMNLYLHGI-GTDRSPIVCEDSLEKE-PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQ  277 (425)
T ss_dssp             TTEEEEESCHHHHHHHHHHHHHTTC-CSSCCSEEECCTTTSC-CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHH
T ss_pred             hhhhhhhccHHHHHHHHhhhhhcCC-ccccceeecCchhhhh-cccccceEEecCCCCCCccccchhhhhhcccccccHH
Confidence            2599999999999999877654321 1224456777776544 357899999976542111                1 1


Q ss_pred             HHHHHHHHHhhcCCCeeEEEEe
Q 020988          254 SNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       254 ~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      ...+..+.+.|+++|..++++.
T Consensus       278 ~~Fi~~~~~~Lk~~G~~~iI~p  299 (425)
T d2okca1         278 LNFLQHMMLMLKTGGRAAVVLP  299 (425)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHHhcCCCCeEEEEec
Confidence            2467888889999998888887

>d2hf1a1 b.171.1.1 (A:2-60) Hypothetical protein CV3345 {Chromobacterium violaceum [TaxId: 536]}

class: All beta proteins
fold: Trm112p-like
superfamily: Trm112p-like
family: Trm112p-like
domain: Hypothetical protein CV3345
species: Chromobacterium violaceum [TaxId: 536]

Probab=98.10  E-value=5.3e-07  Score=58.79  Aligned_cols=45  Identities=18%  Similarity=0.437  Sum_probs=37.6

Q ss_pred             cCeeeccCCCccccccCCCCCcccceecCceeeCccCCccccCCceeeeccccC
Q 020988           58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISG  111 (319)
Q Consensus        58 ~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~~~g~~~~~~~~~  111 (319)
                      .++++||+|+++|.....         .+.+.|..|+..|++.+|++.++.++.
T Consensus         5 L~iL~CP~ck~~L~~~~~---------~~~Lvc~~~~l~YPI~dGIPvlL~~eA   49 (59)
T d2hf1a1           5 LEILVCPLCKGPLVFDKS---------KDELICKGDRLAFPIKDGIPMMLESEA   49 (59)
T ss_dssp             EEECBCTTTCCBCEEETT---------TTEEEETTTTEEEEEETTEECCCGGGC
T ss_pred             hhhhcCCCCCCeeeEeCC---------CCEEecCCcCccccccCCccccCHHHh
Confidence            468999999999976543         256899999999999999999986543

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.08  E-value=7.2e-06  Score=70.86  Aligned_cols=108  Identities=9%  Similarity=0.046  Sum_probs=79.4

Q ss_pred             ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhc-CccCCCCeEEEEcCCCC-CCCCCCCccEE
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVRADVCR-LPFASGFVDAV  241 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~i~~~~~d~~~-lp~~~~~fD~V  241 (319)
                      ...+.+||-||.|.|..+..+.+..+..+++.+|+++.+++.|++.+... +....++++++.+|... +.-.+++||+|
T Consensus        73 ~~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvI  152 (274)
T d1iy9a_          73 HPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI  152 (274)
T ss_dssp             SSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred             cCCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEE
Confidence            34568999999999999999998765679999999999999999987432 12236789999999865 22345789999


Q ss_pred             Eeccc-----ccCCCCHHHHHHHHHHhhcCCCeeEE
Q 020988          242 HAGAA-----LHCWPSPSNAASVFSSSYSLLSICYL  272 (319)
Q Consensus       242 ~~~~v-----l~h~~d~~~~l~el~rvlk~g~~~g~  272 (319)
                      +.-..     -.++. ..++.+.+++.|+++|....
T Consensus       153 i~D~~~p~~~~~~L~-t~eFy~~~~~~L~~~Gv~v~  187 (274)
T d1iy9a_         153 MVDSTEPVGPAVNLF-TKGFYAGIAKALKEDGIFVA  187 (274)
T ss_dssp             EESCSSCCSCCCCCS-TTHHHHHHHHHEEEEEEEEE
T ss_pred             EEcCCCCCCcchhhc-cHHHHHHHHhhcCCCceEEE
Confidence            97431     11222 24567788888777665443

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.04  E-value=1.8e-05  Score=63.90  Aligned_cols=128  Identities=13%  Similarity=0.089  Sum_probs=78.7

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC--------CCC
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------FAS  235 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------~~~  235 (319)
                      .++.+|||+||+.|.|+..+.+. +....++++|+.+-         .     ...++.++++|+....        ...
T Consensus        21 k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~---------~-----~i~~~~~~~~d~~~~~~~~~~~~~~~~   86 (180)
T d1ej0a_          21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM---------D-----PIVGVDFLQGDFRDELVMKALLERVGD   86 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC---------C-----CCTTEEEEESCTTSHHHHHHHHHHHTT
T ss_pred             CCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc---------c-----ccCCceEeecccccchhhhhhhhhccC
Confidence            57889999999999999988875 45568999998661         1     2468899999987632        235


Q ss_pred             CCccEEEecccccCCCCHH-----------HHHHHHHHhhcCCCeeEEEEeeccchhcccCCccccccccccccCCCCCC
Q 020988          236 GFVDAVHAGAALHCWPSPS-----------NAASVFSSSYSLLSICYLLQFRYTKIIELDNDNLILHPRRGQVNNSGQEP  304 (319)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~-----------~~l~el~rvlk~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (319)
                      ..+|+|++-.+..-..+..           ..+.-+.++|++||.+-+-+|.......+.......+..+.-+.-.-.++
T Consensus        87 ~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~~~~l~~~l~~~F~~V~~~KP~aSR~  166 (180)
T d1ej0a_          87 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRA  166 (180)
T ss_dssp             CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHHHEEEEEEECCTTSCT
T ss_pred             cceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCccHHHHHHHHHhhcCEEEEECCCCccc
Confidence            7899999977655433321           11333344555555544445543333333333333444444444444444


Q ss_pred             cc
Q 020988          305 GT  306 (319)
Q Consensus       305 g~  306 (319)
                      .+
T Consensus       167 ~S  168 (180)
T d1ej0a_         167 RS  168 (180)
T ss_dssp             TC
T ss_pred             CC
Confidence            43

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=5.2e-06  Score=72.16  Aligned_cols=108  Identities=12%  Similarity=0.113  Sum_probs=76.6

Q ss_pred             ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhc-CccCCCCeEEEEcCCCCC-CCCCCCccEE
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVRADVCRL-PFASGFVDAV  241 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~i~~~~~d~~~l-p~~~~~fD~V  241 (319)
                      ...+.+||-||.|.|..+..+.+..+..+++.+|+++.+++.|++.+... +....++++++.+|+... .-..++||+|
T Consensus        76 ~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI  155 (285)
T d2o07a1          76 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI  155 (285)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred             CcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEE
Confidence            34568999999999999999998765679999999999999999987431 112357999999997552 2235789999


Q ss_pred             Eeccc-----ccCCCCHHHHHHHHHHhhcCCCeeEE
Q 020988          242 HAGAA-----LHCWPSPSNAASVFSSSYSLLSICYL  272 (319)
Q Consensus       242 ~~~~v-----l~h~~d~~~~l~el~rvlk~g~~~g~  272 (319)
                      ++-..     ..++. ..++++.+++.|+++|..-.
T Consensus       156 i~D~~~p~~~~~~L~-t~eF~~~~~~~L~~~Gi~v~  190 (285)
T d2o07a1         156 ITDSSDPMGPAESLF-KESYYQLMKTALKEDGVLCC  190 (285)
T ss_dssp             EEECC------------CHHHHHHHHHEEEEEEEEE
T ss_pred             EEcCCCCCCcccccc-cHHHHHHHHHhcCCCCeEEE
Confidence            97421     11221 12456777777777665433

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.01  E-value=9e-06  Score=70.81  Aligned_cols=107  Identities=12%  Similarity=0.079  Sum_probs=77.3

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcC-ccCCCCeEEEEcCCCCC--CCCCCCccEE
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-TILTSNLALVRADVCRL--PFASGFVDAV  241 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~-~~~~~~i~~~~~d~~~l--p~~~~~fD~V  241 (319)
                      ..+.+||-||.|.|..++.+.+..+..+++.+|+++.+++.+++.+...+ ....++++++.+|....  ...+++||+|
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI  158 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV  158 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred             CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence            45689999999999999999987665689999999999999999764311 12357899999997542  2335689999


Q ss_pred             Eeccc-----ccCCCCHHHHHHHHHHhhcCCCeeEE
Q 020988          242 HAGAA-----LHCWPSPSNAASVFSSSYSLLSICYL  272 (319)
Q Consensus       242 ~~~~v-----l~h~~d~~~~l~el~rvlk~g~~~g~  272 (319)
                      +.-..     -.++. ...+++.+++.|+++|..-.
T Consensus       159 i~D~~dp~~~~~~L~-t~eF~~~~~~~L~~~Gi~v~  193 (290)
T d1xj5a_         159 IVDSSDPIGPAKELF-EKPFFQSVARALRPGGVVCT  193 (290)
T ss_dssp             EECCCCTTSGGGGGG-SHHHHHHHHHHEEEEEEEEE
T ss_pred             EEcCCCCCCcchhhC-CHHHHHHHHHhcCCCcEEEE
Confidence            97322     11221 14567777777766654443

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.00  E-value=5e-06  Score=72.97  Aligned_cols=108  Identities=12%  Similarity=0.081  Sum_probs=74.6

Q ss_pred             ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcC-ccCCCCeEEEEcCCCCC-CCCCCCccEE
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-TILTSNLALVRADVCRL-PFASGFVDAV  241 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~-~~~~~~i~~~~~d~~~l-p~~~~~fD~V  241 (319)
                      ...+.+||-||.|.|..++.+.+..+..+|+.+|+++.+++.+++.+.... ....++++++.+|+... .-.+++||+|
T Consensus       104 ~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvI  183 (312)
T d2b2ca1         104 HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVI  183 (312)
T ss_dssp             SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred             CCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEE
Confidence            345689999999999999999987655699999999999999999875422 12357899999998652 2235789999


Q ss_pred             EecccccCCC----CHHHHHHHHHHhhcCCCeeE
Q 020988          242 HAGAALHCWP----SPSNAASVFSSSYSLLSICY  271 (319)
Q Consensus       242 ~~~~vl~h~~----d~~~~l~el~rvlk~g~~~g  271 (319)
                      ++-..-..-+    -...+++.+++.|+++|..-
T Consensus       184 I~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v  217 (312)
T d2b2ca1         184 ITDSSDPVGPAESLFGQSYYELLRDALKEDGILS  217 (312)
T ss_dssp             EECCC-------------HHHHHHHHEEEEEEEE
T ss_pred             EEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEE
Confidence            9843211111    11344666677766655433

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=97.96  E-value=1.9e-05  Score=66.62  Aligned_cols=96  Identities=15%  Similarity=-0.006  Sum_probs=73.5

Q ss_pred             CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC---CCCCccEEE
Q 020988          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF---ASGFVDAVH  242 (319)
Q Consensus       166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~---~~~~fD~V~  242 (319)
                      ...+|+|||+|.|.-+..++-..|..+++.+|.+..-+...+.-....   ...++.++...++.+..   ..++||+|+
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L---~L~n~~i~~~R~E~~~~~~~~~~~~D~v~  146 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEAL---QLENTTFCHDRAETFGQRKDVRESYDIVT  146 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH---TCSSEEEEESCHHHHTTCTTTTTCEEEEE
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHh---CCCCcEEEeehhhhccccccccccceEEE
Confidence            567999999999999988888778889999999998877777655554   35688898888776542   236899999


Q ss_pred             ecccccCCCCHHHHHHHHHHhhcCCC
Q 020988          243 AGAALHCWPSPSNAASVFSSSYSLLS  268 (319)
Q Consensus       243 ~~~vl~h~~d~~~~l~el~rvlk~g~  268 (319)
                      +-.    +......++.....++++|
T Consensus       147 sRA----va~l~~ll~~~~~~l~~~g  168 (239)
T d1xdza_         147 ARA----VARLSVLSELCLPLVKKNG  168 (239)
T ss_dssp             EEC----CSCHHHHHHHHGGGEEEEE
T ss_pred             Ehh----hhCHHHHHHHHhhhcccCC
Confidence            964    4466676676767766554

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=97.82  E-value=2.9e-05  Score=65.19  Aligned_cols=108  Identities=10%  Similarity=-0.010  Sum_probs=67.8

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHh----hCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAK----SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~----~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (319)
                      ...+.+++...++.+|||||++.|.-+..++.    .+...+++|+|+++........        ...+++++.+|...
T Consensus        69 ~~~~~eli~~~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~--------~~~~I~~i~gDs~~  140 (232)
T d2bm8a1          69 QAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS--------DMENITLHQGDCSD  140 (232)
T ss_dssp             HHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG--------GCTTEEEEECCSSC
T ss_pred             HHHHHHHHHHhCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc--------cccceeeeeccccc
Confidence            34556666666788999999999986655443    3556799999998754332211        24689999999865


Q ss_pred             CC----CCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988          231 LP----FASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       231 lp----~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~  275 (319)
                      ..    +.+..+|.|+.-..  |..+.....-++..++++||   .+++
T Consensus       141 ~~~~~~l~~~~~dlIfID~~--H~~~~v~~~~~~~~lLk~GG---~iIv  184 (232)
T d2bm8a1         141 LTTFEHLREMAHPLIFIDNA--HANTFNIMKWAVDHLLEEGD---YFII  184 (232)
T ss_dssp             SGGGGGGSSSCSSEEEEESS--CSSHHHHHHHHHHHTCCTTC---EEEE
T ss_pred             HHHHHHHHhcCCCEEEEcCC--cchHHHHHHHHHhcccCcCC---EEEE
Confidence            43    34557898887543  33332222113445555554   5555

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.81  E-value=8.1e-05  Score=65.30  Aligned_cols=87  Identities=15%  Similarity=0.106  Sum_probs=70.2

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC
Q 020988          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (319)
Q Consensus       154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (319)
                      ........+.+.++.+|||+.+|.|.=+..++... ....+++.|.++.-++..+++++..+   ..++.+...|...++
T Consensus       104 aS~l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~---~~~i~~~~~d~~~~~  180 (313)
T d1ixka_         104 SSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLG---VLNVILFHSSSLHIG  180 (313)
T ss_dssp             HHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHT---CCSEEEESSCGGGGG
T ss_pred             cccchhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHH---hhccccccccccccc
Confidence            33455566778899999999999999888787663 34589999999999999998887763   567888888887777


Q ss_pred             CCCCCccEEEe
Q 020988          233 FASGFVDAVHA  243 (319)
Q Consensus       233 ~~~~~fD~V~~  243 (319)
                      .....||.|++
T Consensus       181 ~~~~~fD~ILv  191 (313)
T d1ixka_         181 ELNVEFDKILL  191 (313)
T ss_dssp             GGCCCEEEEEE
T ss_pred             cccccccEEEE
Confidence            66789999997

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.78  E-value=0.00012  Score=63.26  Aligned_cols=118  Identities=14%  Similarity=0.178  Sum_probs=83.3

Q ss_pred             HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-C
Q 020988          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-F  233 (319)
Q Consensus       155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~  233 (319)
                      .......+...++.+|||+.+|.|.=+..+++.+.+..++++|+++.-++..+++++..+   ..++.....|..... .
T Consensus        91 S~l~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g---~~~~~~~~~~~~~~~~~  167 (284)
T d1sqga2          91 AQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLG---MKATVKQGDGRYPSQWC  167 (284)
T ss_dssp             HHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTT---CCCEEEECCTTCTHHHH
T ss_pred             ccccccccCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhccc---ccceeeeccccccchhc
Confidence            344555677889999999999999999999888777789999999999999999988763   334444444433221 2


Q ss_pred             CCCCccEEEe------cccccCCCCHH---------H----HHHHHHHhhcCCCeeEEEEe
Q 020988          234 ASGFVDAVHA------GAALHCWPSPS---------N----AASVFSSSYSLLSICYLLQF  275 (319)
Q Consensus       234 ~~~~fD~V~~------~~vl~h~~d~~---------~----~l~el~rvlk~g~~~g~~~~  275 (319)
                      ..+.||.|++      .+++..-++..         +    ..+-+.+.++.++++|.+++
T Consensus       168 ~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvY  228 (284)
T d1sqga2         168 GEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVY  228 (284)
T ss_dssp             TTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             ccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEE
Confidence            3468999996      34565544432         1    12334456677788888888

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.65  E-value=9.2e-05  Score=66.52  Aligned_cols=103  Identities=15%  Similarity=0.066  Sum_probs=72.7

Q ss_pred             cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCcc------------CCCCeEEEEcCCCCCC
Q 020988          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI------------LTSNLALVRADVCRLP  232 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~------------~~~~i~~~~~d~~~lp  232 (319)
                      ..+.+|||..||+|..+...+...+..+|+..|+|+.+++.++++++.++..            ....+.+...|+..+-
T Consensus        44 ~~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~  123 (375)
T d2dula1          44 LNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM  123 (375)
T ss_dssp             HCCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred             hCCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhh
Confidence            3578999999999999997766555568999999999999999998765311            0123455555654332


Q ss_pred             -CCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeE
Q 020988          233 -FASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICY  271 (319)
Q Consensus       233 -~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g  271 (319)
                       -..+.||+|.+-    -+..+..++....+.++.+|..+
T Consensus       124 ~~~~~~fDvIDiD----PfGs~~pfldsAi~a~~~~Gll~  159 (375)
T d2dula1         124 AERHRYFHFIDLD----PFGSPMEFLDTALRSAKRRGILG  159 (375)
T ss_dssp             HHSTTCEEEEEEC----CSSCCHHHHHHHHHHEEEEEEEE
T ss_pred             HhhcCcCCcccCC----CCCCcHHHHHHHHHHhccCCEEE
Confidence             234679999764    35567788888888776554333

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=97.56  E-value=0.00012  Score=68.71  Aligned_cols=130  Identities=8%  Similarity=-0.056  Sum_probs=88.9

Q ss_pred             CCCCCcHHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhC----C--------------CCeEEEEeCCHHHHHHHH
Q 020988          146 SGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG----T--------------YSGVVALDFSENMLRQCY  207 (319)
Q Consensus       146 ~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g----~--------------~~~v~gvD~s~~~l~~a~  207 (319)
                      +.|+.|....+.|.+++.+.++.+|+|-+||+|.|+..+.+..    .              ...++|+|+++.+.+.|+
T Consensus       144 GqfyTP~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~  223 (524)
T d2ar0a1         144 GQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLAL  223 (524)
T ss_dssp             -CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHH
T ss_pred             chhccccchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHH
Confidence            4588999999999999988889999999999999998765531    0              125899999999999988


Q ss_pred             HHHhhcCccC--CCCeEEEEcCCCCCC-CCCCCccEEEecccccCC-------------CCH-HHHHHHHHHhhcCCCee
Q 020988          208 DFIKQDNTIL--TSNLALVRADVCRLP-FASGFVDAVHAGAALHCW-------------PSP-SNAASVFSSSYSLLSIC  270 (319)
Q Consensus       208 ~~~~~~~~~~--~~~i~~~~~d~~~lp-~~~~~fD~V~~~~vl~h~-------------~d~-~~~l~el~rvlk~g~~~  270 (319)
                      -++.-.+...  ..+-.+..++....+ .....||+|+++--+.--             .+. ..+++.+.+.|+++|..
T Consensus       224 ~nl~l~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~  303 (524)
T d2ar0a1         224 MNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRA  303 (524)
T ss_dssp             HHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEE
T ss_pred             HHHHhhcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcE
Confidence            7664321000  011123333333221 234679999997543211             111 24688888999999999


Q ss_pred             EEEEe
Q 020988          271 YLLQF  275 (319)
Q Consensus       271 g~~~~  275 (319)
                      ++++.
T Consensus       304 aiIlP  308 (524)
T d2ar0a1         304 AVVVP  308 (524)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            88887

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=0.00016  Score=62.81  Aligned_cols=84  Identities=13%  Similarity=0.148  Sum_probs=67.2

Q ss_pred             HHHHHhhccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC-
Q 020988          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-  234 (319)
Q Consensus       157 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~-  234 (319)
                      .....+...++.+|||+++|.|.-+.+++.. +....++++|+++.-++..+++++..   ...++.+...|...++.. 
T Consensus        85 l~~~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~---g~~~~~~~~~d~~~~~~~~  161 (293)
T d2b9ea1          85 LPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARA---GVSCCELAEEDFLAVSPSD  161 (293)
T ss_dssp             HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHT---TCCSEEEEECCGGGSCTTC
T ss_pred             ccccccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhc---Cccceeeeehhhhhhcccc
Confidence            3445567788999999999999988887765 34568999999999999999998886   356889999888766432 


Q ss_pred             --CCCccEEEe
Q 020988          235 --SGFVDAVHA  243 (319)
Q Consensus       235 --~~~fD~V~~  243 (319)
                        .+.||.|++
T Consensus       162 ~~~~~fD~VL~  172 (293)
T d2b9ea1         162 PRYHEVHYILL  172 (293)
T ss_dssp             GGGTTEEEEEE
T ss_pred             cccceeeEEee
Confidence              257999997

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.31  E-value=0.0012  Score=55.14  Aligned_cols=111  Identities=14%  Similarity=0.058  Sum_probs=65.4

Q ss_pred             hhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEc-CCCCCCCCCCCccE
Q 020988          162 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DVCRLPFASGFVDA  240 (319)
Q Consensus       162 l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~-d~~~lp~~~~~fD~  240 (319)
                      ....+.++|+|+|||.|.++..++.......+.|+|+--+..+. -.....   ....-+++... |+..+  ..+..|+
T Consensus        62 ~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~-P~~~~~---~~~ni~~~~~~~dv~~l--~~~~~D~  135 (257)
T d2p41a1          62 NLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEE-PIPMST---YGWNLVRLQSGVDVFFI--PPERCDT  135 (257)
T ss_dssp             TSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC-CCCCCS---TTGGGEEEECSCCTTTS--CCCCCSE
T ss_pred             cCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccC-Cccccc---cccccccchhhhhHHhc--CCCcCCE
Confidence            34567889999999999999999887554577888873221000 000000   00112333332 33333  3578999


Q ss_pred             EEecccccCCCCHH-------HHHHHHHHhhcCCCeeEEEEeeccc
Q 020988          241 VHAGAALHCWPSPS-------NAASVFSSSYSLLSICYLLQFRYTK  279 (319)
Q Consensus       241 V~~~~vl~h~~d~~-------~~l~el~rvlk~g~~~g~~~~~~~~  279 (319)
                      |+|--+- +.+++.       ++++-+.+.|++++.+.+-+|.++.
T Consensus       136 vlcDm~e-ss~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~  180 (257)
T d2p41a1         136 LLCDIGE-SSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYM  180 (257)
T ss_dssp             EEECCCC-CCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCS
T ss_pred             EEeeCCC-CCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCCC
Confidence            9997653 355543       3344455678888876666776553

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.14  E-value=0.00077  Score=59.08  Aligned_cols=60  Identities=15%  Similarity=0.113  Sum_probs=50.2

Q ss_pred             CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC
Q 020988          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (319)
Q Consensus       166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (319)
                      .+..|||||.|.|.++..+.+.+...+++++|+++...+..++.+.      ..++.++.+|+..+
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~------~~~~~ii~~D~l~~  102 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE------GSPLQILKRDPYDW  102 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT------TSSCEEECSCTTCH
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc------CCCcEEEeCchhhc
Confidence            4678999999999999999987533589999999999999988764      35789999998653

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=96.94  E-value=0.0015  Score=54.91  Aligned_cols=93  Identities=16%  Similarity=0.043  Sum_probs=65.1

Q ss_pred             HHHHHhhccCC--CeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCcc------CCCCeEEEEcCC
Q 020988          157 MAQEYFKSAQG--GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI------LTSNLALVRADV  228 (319)
Q Consensus       157 ~l~~~l~~~~~--~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~------~~~~i~~~~~d~  228 (319)
                      .+.+.+....+  .+|||.=||.|..+..++..|.  +|+++|-++.+....++.+......      ...+++++.+|.
T Consensus        77 ~l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~G~--~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds  154 (250)
T d2oyra1          77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC--RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS  154 (250)
T ss_dssp             HHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTC--CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred             HHHHHhcCCCCCCCEEEECCCcccHHHHHHHhCCC--EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcH
Confidence            34445543333  4899999999999999999986  9999999998766655443321100      023789999997


Q ss_pred             CC-CCCCCCCccEEEecccccCCC
Q 020988          229 CR-LPFASGFVDAVHAGAALHCWP  251 (319)
Q Consensus       229 ~~-lp~~~~~fD~V~~~~vl~h~~  251 (319)
                      .+ +.-..++||+|+.--.+.+-.
T Consensus       155 ~~~L~~~~~~~DvIYlDPMFp~~~  178 (250)
T d2oyra1         155 LTALTDITPRPQVVYLDPMFPHKQ  178 (250)
T ss_dssp             HHHSTTCSSCCSEEEECCCCCCCC
T ss_pred             HHHHhccCCCCCEEEECCCCcccc
Confidence            55 333356799999977776554

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=96.55  E-value=0.0039  Score=51.77  Aligned_cols=58  Identities=17%  Similarity=0.211  Sum_probs=49.5

Q ss_pred             cHHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHh
Q 020988          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIK  211 (319)
Q Consensus       151 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~  211 (319)
                      |....+.+.+... .++..|||.=||+|..+.++.+.+.  +.+|+|++++.++.|++|+.
T Consensus       198 P~~L~~~lI~~~s-~~gd~VlDpF~GSGTT~~aa~~~~R--~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         198 PRDLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKLGR--NFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             CHHHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHhC-CCCCEEEECCCCchHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHc
Confidence            4555666666654 6789999999999999999999876  99999999999999999975

>d2akla2 g.41.3.5 (A:3-40) Hypothetical protein PA0128, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: PhnA zinc-binding domain
domain: Hypothetical protein PA0128, N-terminal domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.40  E-value=0.00088  Score=38.49  Aligned_cols=30  Identities=23%  Similarity=0.579  Sum_probs=24.5

Q ss_pred             eeeccCCCccccccCCCCCcccceecCceeeCccCCcccc
Q 020988           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSS   99 (319)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~   99 (319)
                      +=.||.|++...-.+.          ..+.|+.|+|.+..
T Consensus         3 lP~CP~C~seytYedg----------~l~vCPeC~hEW~~   32 (38)
T d2akla2           3 LPPCPQCNSEYTYEDG----------ALLVCPECAHEWSP   32 (38)
T ss_dssp             SCCCTTTCCCCCEECS----------SSEEETTTTEEECT
T ss_pred             CCcCCCCCCcceEcCC----------CEEECCcccCcCCc
Confidence            4579999998877664          78999999999854

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=96.26  E-value=0.0038  Score=53.50  Aligned_cols=60  Identities=10%  Similarity=0.071  Sum_probs=50.4

Q ss_pred             CcHHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhh
Q 020988          150 GPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ  212 (319)
Q Consensus       150 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~  212 (319)
                      -|....+.+.... ..+++.|||.=||+|..+.++.+.+.  +.+|+|++++.++.|++|+.+
T Consensus       235 kP~~L~~rlI~~~-s~~gdiVlDpF~GSGTT~~AA~~lgR--~~Ig~El~~~y~~~a~~Rl~~  294 (320)
T d1booa_         235 FPAKLPEFFIRML-TEPDDLVVDIFGGSNTTGLVAERESR--KWISFEMKPEYVAASAFRFLD  294 (320)
T ss_dssp             CCTHHHHHHHHHH-CCTTCEEEETTCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHGGGSC
T ss_pred             CchHHHHHhhhhc-ccCCCEEEecCCCCcHHHHHHHHcCC--cEEEEeCCHHHHHHHHHHHHh
Confidence            3455566666655 45789999999999999999999877  999999999999999998754

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.82  E-value=0.012  Score=49.26  Aligned_cols=59  Identities=17%  Similarity=0.212  Sum_probs=50.3

Q ss_pred             cHHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhh
Q 020988          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ  212 (319)
Q Consensus       151 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~  212 (319)
                      |....+.+.+.. ..++..|||-=||+|..+.++.+.+.  +.+|+|+++...+.|++|+..
T Consensus       193 P~~L~~~~I~~~-s~~gdiVLDpF~GSGTT~~Aa~~lgR--~~ig~El~~~y~~~a~~Ri~~  251 (279)
T d1eg2a_         193 PAAVIERLVRAL-SHPGSTVLDFFAGSGVTARVAIQEGR--NSICTDAAPVFKEYYQKQLTF  251 (279)
T ss_dssp             CHHHHHHHHHHH-SCTTCEEEETTCTTCHHHHHHHHHTC--EEEEEESSTHHHHHHHHHHHH
T ss_pred             chhHHHHHHHhh-cCCCCEEEecCCCCcHHHHHHHHhCC--eEEEEeCCHHHHHHHHHHHHH
Confidence            444566666655 36899999999999999999999887  999999999999999999876

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.76  E-value=0.023  Score=45.42  Aligned_cols=102  Identities=12%  Similarity=0.073  Sum_probs=67.3

Q ss_pred             HhhccCCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC------
Q 020988          161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF------  233 (319)
Q Consensus       161 ~l~~~~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~------  233 (319)
                      ....+++.+||-+|||. |..+..+++.....+|+++|.+++-++.|++.          +.+.+. +..+.++      
T Consensus        20 ~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~----------Ga~~~~-~~~~~~~~~~i~~   88 (195)
T d1kola2          20 TAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----------GFEIAD-LSLDTPLHEQIAA   88 (195)
T ss_dssp             HTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----------TCEEEE-TTSSSCHHHHHHH
T ss_pred             HhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc----------cccEEE-eCCCcCHHHHHHH
Confidence            34567899999999998 66777777665456899999999999988874          233332 2222111      


Q ss_pred             --CCCCccEEEeccccc---C------CCCHHHHHHHHHHhhcCCCeeEEE
Q 020988          234 --ASGFVDAVHAGAALH---C------WPSPSNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       234 --~~~~fD~V~~~~vl~---h------~~d~~~~l~el~rvlk~g~~~g~~  273 (319)
                        ....+|+++-.-..+   .      .......++...++++++|...++
T Consensus        89 ~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~  139 (195)
T d1kola2          89 LLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP  139 (195)
T ss_dssp             HHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred             HhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEe
Confidence              234689988543211   1      112345788888888888766555

>d1tfia_ g.41.3.1 (A:) Transcriptional factor SII, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcriptional factor SII, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.22  E-value=0.0035  Score=38.59  Aligned_cols=42  Identities=17%  Similarity=0.349  Sum_probs=25.6

Q ss_pred             cccCeeeccCCCcccc-ccCCCCCcccceecCceeeCccCCcc
Q 020988           56 LEGDLFSCPICYEPLI-RKGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        56 ~~~~~l~CP~C~~~l~-~~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      ...+++.||.|++.-. ...-...+.++-....+.|.+||+.|
T Consensus         5 ~~T~~~~C~kC~~~~~~~~~~QtRSADEp~T~F~~C~~Cg~~W   47 (50)
T d1tfia_           5 TQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW   47 (50)
T ss_dssp             EECCCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEE
T ss_pred             cccCCEECCCCCCCccEEEEEEccCCCCCceEEEEccccCCee
Confidence            3468999999998321 11111222233333578999999987

>d1twfi2 g.41.3.1 (I:50-121) RBP9 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: RBP9 subunit of RNA polymerase II
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.19  E-value=0.0066  Score=40.41  Aligned_cols=46  Identities=17%  Similarity=0.232  Sum_probs=27.6

Q ss_pred             cccccCeeeccCCCccc-cccCCCCCcccceecCceeeCccCCcccc
Q 020988           54 LELEGDLFSCPICYEPL-IRKGPTGLTLGAIYRSGFKCRKCDKTYSS   99 (319)
Q Consensus        54 ~~~~~~~l~CP~C~~~l-~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~   99 (319)
                      ++|+..-..||.|++.- ........+.+.-+.-.+.|.+|||.|..
T Consensus        17 Ptlp~t~~~CpkCg~~~a~~~q~QtRsaDE~mT~Fy~C~~C~h~Wr~   63 (72)
T d1twfi2          17 PTLPRSDRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTS   63 (72)
T ss_dssp             TTSCCCCCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEEC
T ss_pred             CCCCccCCCCCCCCCCeEEEEEeecCccCCCceEEEEcCCCCCCccc
Confidence            35566667999999831 11111122223333457899999999943

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=95.08  E-value=0.13  Score=39.52  Aligned_cols=96  Identities=16%  Similarity=0.039  Sum_probs=63.1

Q ss_pred             hhccCCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC--------
Q 020988          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------  232 (319)
Q Consensus       162 l~~~~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------  232 (319)
                      ....++.+||-+|||. |.++.++++.. ..+|+++|.+++-++.|++.-        ....+.. +.....        
T Consensus        22 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~~r~~~a~~~g--------a~~~~~~-~~~~~~~~~~~~~~   91 (170)
T d1e3ja2          22 AGVQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNCG--------ADVTLVV-DPAKEEESSIIERI   91 (170)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTT--------CSEEEEC-CTTTSCHHHHHHHH
T ss_pred             hCCCCCCEEEEEcccccchhhHhhHhhh-cccccccchHHHHHHHHHHcC--------CcEEEec-cccccccchhhhhh
Confidence            4567899999999994 77777777764 359999999999999998742        1222222 221111        


Q ss_pred             --CCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988          233 --FASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       233 --~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~  273 (319)
                        ...+.+|+|+-.     ... ...+....++++++|....+
T Consensus        92 ~~~~g~g~D~vid~-----~g~-~~~~~~a~~~~~~~G~iv~~  128 (170)
T d1e3ja2          92 RSAIGDLPNVTIDC-----SGN-EKCITIGINITRTGGTLMLV  128 (170)
T ss_dssp             HHHSSSCCSEEEEC-----SCC-HHHHHHHHHHSCTTCEEEEC
T ss_pred             hcccccCCceeeec-----CCC-hHHHHHHHHHHhcCCceEEE
Confidence              113468988653     333 34577888898888765543

>d1qypa_ g.41.3.1 (A:) RBP9 subunit of RNA polymerase II {Archaeon Thermococcus celer [TaxId: 2264]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: RBP9 subunit of RNA polymerase II
species: Archaeon Thermococcus celer [TaxId: 2264]

Probab=95.08  E-value=0.0044  Score=39.34  Aligned_cols=45  Identities=20%  Similarity=0.281  Sum_probs=26.1

Q ss_pred             cccccCeeeccCCCccc-cccCCCCCcccceecCceeeCccCCccc
Q 020988           54 LELEGDLFSCPICYEPL-IRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (319)
Q Consensus        54 ~~~~~~~l~CP~C~~~l-~~~~~~~~~~~~i~~~~~~C~~Cg~~f~   98 (319)
                      .+++...+.||.|++.- ..........++-+.-.+.|.+|||.|.
T Consensus         9 ~~~pt~~~~CpkC~~~~a~~~~~QtRsaDE~~T~fy~C~~Cg~~wr   54 (57)
T d1qypa_           9 KTLPTTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWR   54 (57)
T ss_dssp             SSSCEEECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEE
T ss_pred             ccCCcccCCCCCCCCCceEEEEeecccccCCCeEEEEeCCCCCcce
Confidence            44555567999999831 1101111222333335789999999984

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.08  E-value=0.044  Score=42.65  Aligned_cols=97  Identities=18%  Similarity=0.119  Sum_probs=61.5

Q ss_pred             HHhhccCCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-----CC
Q 020988          160 EYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----PF  233 (319)
Q Consensus       160 ~~l~~~~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-----p~  233 (319)
                      +.....++.+||=+|||. |.++.++++......++.+|.++.-++.+++.-         -..++..+-.+.     .+
T Consensus        22 ~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~G---------a~~~i~~~~~~~~~~i~~~   92 (174)
T d1f8fa2          22 NALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLG---------ATHVINSKTQDPVAAIKEI   92 (174)
T ss_dssp             TTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHT---------CSEEEETTTSCHHHHHHHH
T ss_pred             HhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcC---------CeEEEeCCCcCHHHHHHHH
Confidence            345567899999999985 556666666643457889999999999988742         113333322221     12


Q ss_pred             CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeE
Q 020988          234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICY  271 (319)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g  271 (319)
                      .++.||+|+-     ....+ ..+++..++++++|...
T Consensus        93 t~gg~D~vid-----~~G~~-~~~~~~~~~~~~~G~i~  124 (174)
T d1f8fa2          93 TDGGVNFALE-----STGSP-EILKQGVDALGILGKIA  124 (174)
T ss_dssp             TTSCEEEEEE-----CSCCH-HHHHHHHHTEEEEEEEE
T ss_pred             cCCCCcEEEE-----cCCcH-HHHHHHHhcccCceEEE
Confidence            3457998854     44333 44667777777765444

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.46  E-value=0.14  Score=39.34  Aligned_cols=97  Identities=12%  Similarity=0.039  Sum_probs=62.5

Q ss_pred             hhccCCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC--------
Q 020988          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------  232 (319)
Q Consensus       162 l~~~~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------  232 (319)
                      ....++.+||=+|+|. |.++.++++.....+|+++|.++.-++.|++.-        .. .++..+-....        
T Consensus        22 ~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~G--------a~-~~~~~~~~~~~~~~~~~~~   92 (171)
T d1pl8a2          22 GGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIG--------AD-LVLQISKESPQEIARKVEG   92 (171)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTT--------CS-EEEECSSCCHHHHHHHHHH
T ss_pred             hCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhC--------Cc-ccccccccccccccccccc
Confidence            4567889999999986 566666766644458999999999999888641        11 12222211110        


Q ss_pred             CCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988          233 FASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~  273 (319)
                      -....+|+|+-     .... ...++...++++++|...++
T Consensus        93 ~~g~g~Dvvid-----~~G~-~~~~~~a~~~~~~gG~iv~~  127 (171)
T d1pl8a2          93 QLGCKPEVTIE-----CTGA-EASIQAGIYATRSGGTLVLV  127 (171)
T ss_dssp             HHTSCCSEEEE-----CSCC-HHHHHHHHHHSCTTCEEEEC
T ss_pred             cCCCCceEEEe-----ccCC-chhHHHHHHHhcCCCEEEEE
Confidence            01246898865     3434 34577888898888765444

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=94.25  E-value=0.075  Score=41.39  Aligned_cols=97  Identities=12%  Similarity=-0.010  Sum_probs=61.3

Q ss_pred             HhhccCCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC------C
Q 020988          161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------F  233 (319)
Q Consensus       161 ~l~~~~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------~  233 (319)
                      .....++.+||=+|||. |.++.++++.....+|+++|.++.-++.+++.-         -.+++.-.-....      .
T Consensus        22 ~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lG---------a~~~i~~~~~~~~~~v~~~t   92 (174)
T d1jqba2          22 LADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYG---------ATDILNYKNGHIEDQVMKLT   92 (174)
T ss_dssp             HTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHT---------CSEEECGGGSCHHHHHHHHT
T ss_pred             HhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhC---------ccccccccchhHHHHHHHHh
Confidence            34567899999999996 888888888753357999999999988888641         1122222111110      1


Q ss_pred             CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEE
Q 020988          234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYL  272 (319)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~  272 (319)
                      ....+|+|+-.     ...+ ..+++..++++++|....
T Consensus        93 ~g~G~D~vid~-----~g~~-~~~~~a~~~~~~~G~iv~  125 (174)
T d1jqba2          93 NGKGVDRVIMA-----GGGS-ETLSQAVKMVKPGGIISN  125 (174)
T ss_dssp             TTSCEEEEEEC-----SSCT-THHHHHHHHEEEEEEEEE
T ss_pred             hccCcceEEEc-----cCCH-HHHHHHHHHHhcCCEEEE
Confidence            23459998654     3222 235666777776554443

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=94.15  E-value=0.088  Score=46.15  Aligned_cols=79  Identities=11%  Similarity=0.109  Sum_probs=55.0

Q ss_pred             ccCCCeEEEEcCCcChHHHHHHhhC-------CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCC
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFAKSG-------TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~~~g-------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~  236 (319)
                      ......|+|+|+|+|.++..+.+..       ...+++-+|.|+.+.+..++++..     ..++.++ .++..+|.   
T Consensus        77 ~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~-----~~~i~w~-~~~~~~~~---  147 (365)
T d1zkda1          77 EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG-----IRNIHWH-DSFEDVPE---  147 (365)
T ss_dssp             CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT-----CSSEEEE-SSGGGSCC---
T ss_pred             CCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhcc-----cccceec-cChhhccc---
Confidence            3345689999999999988776542       234689999999988777777654     2455544 35555542   


Q ss_pred             CccEEEecccccCCC
Q 020988          237 FVDAVHAGAALHCWP  251 (319)
Q Consensus       237 ~fD~V~~~~vl~h~~  251 (319)
                      ..-+|+++..+..+|
T Consensus       148 ~~g~iiaNE~fDAlP  162 (365)
T d1zkda1         148 GPAVILANEYFDVLP  162 (365)
T ss_dssp             SSEEEEEESSGGGSC
T ss_pred             CCeEEEecccCcccc
Confidence            226788888888776

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.05  E-value=0.019  Score=44.63  Aligned_cols=47  Identities=13%  Similarity=0.050  Sum_probs=37.9

Q ss_pred             hhccCCCeEEEEcCC-cChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHH
Q 020988          162 FKSAQGGLLVDVSCG-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDF  209 (319)
Q Consensus       162 l~~~~~~~VLDiGcG-~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~  209 (319)
                      ....++.+||-+|+| .|.++.++++.. ..+|+++|.+++.++.+++.
T Consensus        23 ~~~~~g~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~~l   70 (168)
T d1piwa2          23 NGCGPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKM   70 (168)
T ss_dssp             TTCSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHH
T ss_pred             hCcCCCCEEEEECCCCcchhHHHHhhhc-cccccccccchhHHHHhhcc
Confidence            456789999999998 577777777652 34999999999999988874

>d1pfva3 g.41.1.1 (A:141-175) Methionyl-tRNA synthetase (MetRS), Zn-domain {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Methionyl-tRNA synthetase (MetRS), Zn-domain
family: Methionyl-tRNA synthetase (MetRS), Zn-domain
domain: Methionyl-tRNA synthetase (MetRS), Zn-domain
species: Escherichia coli [TaxId: 562]

Probab=93.25  E-value=0.02  Score=32.13  Aligned_cols=23  Identities=39%  Similarity=0.894  Sum_probs=18.1

Q ss_pred             eccCCCccccccCCCCCcccceecCceeeCccCCccc
Q 020988           62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (319)
Q Consensus        62 ~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~   98 (319)
                      .||.|+..-...+              .|..||+.|.
T Consensus         4 ~CP~C~~~~a~GD--------------qCe~CG~~~~   26 (35)
T d1pfva3           4 TCPKCKSPDQYGD--------------NCEVCGATYS   26 (35)
T ss_dssp             ECTTTCCSSEETT--------------BCTTTCCBCC
T ss_pred             ECCCCCCcccccc--------------cHHHcCCcCC
Confidence            6999998655443              6999999983

>d1rqga3 g.41.1.1 (A:139-173) Methionyl-tRNA synthetase (MetRS), Zn-domain {Pyrococcus abyssi [TaxId: 29292]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Methionyl-tRNA synthetase (MetRS), Zn-domain
family: Methionyl-tRNA synthetase (MetRS), Zn-domain
domain: Methionyl-tRNA synthetase (MetRS), Zn-domain
species: Pyrococcus abyssi [TaxId: 29292]

Probab=93.01  E-value=0.029  Score=31.47  Aligned_cols=23  Identities=22%  Similarity=0.729  Sum_probs=18.0

Q ss_pred             eccCCCccccccCCCCCcccceecCceeeCccCCccc
Q 020988           62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (319)
Q Consensus        62 ~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~   98 (319)
                      .||.|+..-...+              .|..||+.|.
T Consensus         4 ~CP~C~~~~a~GD--------------qCe~CG~~~~   26 (35)
T d1rqga3           4 TCPYCGAEDQKGD--------------QCEVCGRPLT   26 (35)
T ss_dssp             BCSSSCCSCCCTT--------------TCSSSCCCCC
T ss_pred             ECCCCCCCcccCc--------------chhhcCCccC
Confidence            6999998654443              5999999984

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=92.91  E-value=0.32  Score=37.61  Aligned_cols=97  Identities=16%  Similarity=0.154  Sum_probs=64.2

Q ss_pred             hhccCCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-------C
Q 020988          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-------F  233 (319)
Q Consensus       162 l~~~~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-------~  233 (319)
                      ....++.+||=+|||. |.++.++++......|+.+|.++.-++.|++.-         -..++...-.+..       .
T Consensus        24 a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~G---------a~~~i~~~~~~~~~~~~~~~~   94 (174)
T d1e3ia2          24 AKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALG---------ATDCLNPRELDKPVQDVITEL   94 (174)
T ss_dssp             SCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTT---------CSEEECGGGCSSCHHHHHHHH
T ss_pred             hCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhC---------CCcccCCccchhhhhhhHhhh
Confidence            3457899999999997 888888888865568999999999888888741         1122221111111       1


Q ss_pred             CCCCccEEEecccccCCCCHHHHHHHHHHhhcCC-CeeEEE
Q 020988          234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLL-SICYLL  273 (319)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g-~~~g~~  273 (319)
                      ..+.+|+|+-     ....+ ..+.+..+.++++ |...++
T Consensus        95 ~~~G~d~vie-----~~G~~-~~~~~a~~~~~~g~G~~v~v  129 (174)
T d1e3ia2          95 TAGGVDYSLD-----CAGTA-QTLKAAVDCTVLGWGSCTVV  129 (174)
T ss_dssp             HTSCBSEEEE-----SSCCH-HHHHHHHHTBCTTTCEEEEC
T ss_pred             hcCCCcEEEE-----ecccc-hHHHHHHHHhhcCCeEEEec
Confidence            2457888854     44444 3578888888885 555443

>d1vqoz1 g.41.8.1 (Z:10-82) Ribosomal protein L37ae {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L37ae
domain: Ribosomal protein L37ae
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=92.82  E-value=0.02  Score=37.86  Aligned_cols=29  Identities=31%  Similarity=0.764  Sum_probs=22.1

Q ss_pred             CeeeccCCCcc-ccccCCCCCcccceecCceeeCccCCcc
Q 020988           59 DLFSCPICYEP-LIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        59 ~~l~CP~C~~~-l~~~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      .-+.||.|+.. +.+..          -+++.|..|+..|
T Consensus        26 ~ky~Cp~Cgk~~vkR~a----------~GIW~C~kC~~~~   55 (73)
T d1vqoz1          26 EDHACPNCGEDRVDRQG----------TGIWQCSYCDYKF   55 (73)
T ss_dssp             SCBCCSSSSCSCEEEEE----------TTEEEETTTCCEE
T ss_pred             CCccCCCCCCceeEEEE----------EEEEECCCCCCEE
Confidence            35789999985 33332          3899999999988

>d1jj2y_ g.41.8.1 (Y:) Ribosomal protein L37ae {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L37ae
domain: Ribosomal protein L37ae
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=92.80  E-value=0.02  Score=37.85  Aligned_cols=29  Identities=28%  Similarity=0.624  Sum_probs=22.1

Q ss_pred             CeeeccCCCcc-ccccCCCCCcccceecCceeeCccCCcc
Q 020988           59 DLFSCPICYEP-LIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        59 ~~l~CP~C~~~-l~~~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      ..+.||.|+.. +.+..          -+++.|..|+..|
T Consensus        26 ~ky~Cp~Cgk~~vkR~a----------~GIW~C~kC~~~~   55 (73)
T d1jj2y_          26 KKHKCPVCGFKKLKRAG----------TGIWMCGHCGYKI   55 (73)
T ss_dssp             SCBCCSSSCCSCEEEEE----------TTEEEETTTCCEE
T ss_pred             CCccCCCCCCCceEEEE----------EEEEECCCCCCEE
Confidence            45789999974 33332          2789999999988

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=92.55  E-value=0.27  Score=41.32  Aligned_cols=101  Identities=13%  Similarity=0.177  Sum_probs=69.8

Q ss_pred             CeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC-CCCccEEEeccc
Q 020988          168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVHAGAA  246 (319)
Q Consensus       168 ~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~~fD~V~~~~v  246 (319)
                      .+|||+=||-|.+..-+.+.|. ..+.++|+++.+.+.-+.+.         .-.++.+|+.++... -..+|+++...-
T Consensus         1 mk~~~lF~G~Gg~~~gl~~aG~-~~~~a~e~d~~a~~~~~~N~---------~~~~~~~Di~~~~~~~~~~~dll~~g~P   70 (324)
T d1dcta_           1 MNLISLFSGAGGLDLGFQKAGF-RIICANEYDKSIWKTYESNH---------SAKLIKGDISKISSDEFPKCDGIIGGPP   70 (324)
T ss_dssp             CEEEEESCSSCHHHHHHHHHTC-EEEEEEECCHHHHHHHHHHC---------CSEEEESCTTTSCGGGSCCCSEEEECCC
T ss_pred             CeEEEeCcCcCHHHHHHHHCCC-EEEEEEeCCHHHHHHHHHHC---------CCCCccCChhhCCHhHcccccEEeeccc
Confidence            4799999999999999988885 35669999999888777764         235678999887532 246899987531


Q ss_pred             cc---------CCCCHH-HHHHHHHHhhcCCCeeEEEEeecc
Q 020988          247 LH---------CWPSPS-NAASVFSSSYSLLSICYLLQFRYT  278 (319)
Q Consensus       247 l~---------h~~d~~-~~l~el~rvlk~g~~~g~~~~~~~  278 (319)
                      =.         ...|.. .++-++.++++..+|-.+++=.+.
T Consensus        71 Cq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~Pk~~~lENV~  112 (324)
T d1dcta_          71 CQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPIFFLAENVK  112 (324)
T ss_dssp             CTTTSSSSCCCCSSSHHHHHHHHHHHHHHHHCCSEEEEEEEG
T ss_pred             ccccccccccccccccccchHHHHHHHHHhhCCceeeccccc
Confidence            11         133443 556677777777777665554433

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.21  E-value=0.32  Score=37.03  Aligned_cols=86  Identities=15%  Similarity=0.148  Sum_probs=54.9

Q ss_pred             eEEEEcCCc--ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEeccc
Q 020988          169 LLVDVSCGS--GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA  246 (319)
Q Consensus       169 ~VLDiGcG~--G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v  246 (319)
                      +|+=||||.  |.++..+.+.++..+|+|+|.+++.++.+++.-         .+.....+....  .+...|+|+..--
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~---------~~~~~~~~~~~~--~~~~~dlIila~p   71 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLG---------IIDEGTTSIAKV--EDFSPDFVMLSSP   71 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTT---------SCSEEESCGGGG--GGTCCSEEEECSC
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhh---------cchhhhhhhhhh--hccccccccccCC
Confidence            578899996  446777878887779999999999999888742         222222232222  2345789887532


Q ss_pred             ccCCCCHHHHHHHHHHhhcCCC
Q 020988          247 LHCWPSPSNAASVFSSSYSLLS  268 (319)
Q Consensus       247 l~h~~d~~~~l~el~rvlk~g~  268 (319)
                      ..   .-...++++...+++..
T Consensus        72 ~~---~~~~vl~~l~~~~~~~~   90 (171)
T d2g5ca2          72 VR---TFREIAKKLSYILSEDA   90 (171)
T ss_dssp             HH---HHHHHHHHHHHHSCTTC
T ss_pred             ch---hhhhhhhhhhccccccc
Confidence            22   22355666776766654

>d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Rubredoxin-like
superfamily: YfgJ-like
family: YfgJ-like
domain: Hypothetical protein YfgJ
species: Escherichia coli [TaxId: 562]

Probab=91.69  E-value=0.039  Score=35.90  Aligned_cols=26  Identities=27%  Similarity=0.713  Sum_probs=20.8

Q ss_pred             eeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      +.||.|+.+|...+           +.+.|..|...|
T Consensus         3 ~~CP~C~~eL~~~~-----------~~~~C~~C~~~~   28 (71)
T d2jnea1           3 LHCPQCQHVLDQDN-----------GHARCRSCGEFI   28 (71)
T ss_dssp             CBCSSSCSBEEEET-----------TEEEETTTCCEE
T ss_pred             CcCCCccCcccccC-----------CCEehhhhhhhh
Confidence            57999999988754           567888888877

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.69  E-value=0.069  Score=34.11  Aligned_cols=47  Identities=19%  Similarity=0.409  Sum_probs=28.4

Q ss_pred             ccccccccccCeeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988           49 ERNQTLELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        49 ~~~~~~~~~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      .+..........+.||.|+.....-+.  ..+-....+.|.|..|+..-
T Consensus         3 e~~~rd~~~~~~y~Cp~C~~~ys~Lda--~~L~d~~~~~F~C~~C~~el   49 (62)
T d1vd4a_           3 ETDERDSTNRASFKCPVCSSTFTDLEA--NQLFDPMTGTFRCTFCHTEV   49 (62)
T ss_dssp             CCCSSSCCSSSEEECSSSCCEEEHHHH--HHHEETTTTEEBCSSSCCBC
T ss_pred             chhhhccccCCceECCCCCCCcchhhH--HHhcCcCCCeEEecCCCCEE
Confidence            345567778899999999984311000  00000113789999999753

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=91.67  E-value=0.13  Score=40.12  Aligned_cols=96  Identities=17%  Similarity=0.047  Sum_probs=59.7

Q ss_pred             hhccCCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC--------C
Q 020988          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--------P  232 (319)
Q Consensus       162 l~~~~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l--------p  232 (319)
                      ....++.+||-+|+|. |.+..++++.....+|+++|.+++.++.+++.-        .. .++...-...        .
T Consensus        24 ~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lG--------a~-~vi~~~~~~~~~~~~~i~~   94 (182)
T d1vj0a2          24 PESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIG--------AD-LTLNRRETSVEERRKAIMD   94 (182)
T ss_dssp             SSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTT--------CS-EEEETTTSCHHHHHHHHHH
T ss_pred             hCCCCCCEEEEECCCccchhheeccccccccccccccccccccccccccc--------ce-EEEeccccchHHHHHHHHH
Confidence            3456789999999984 777888887743348999999999999887631        11 1221111110        0


Q ss_pred             -CCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEE
Q 020988          233 -FASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYL  272 (319)
Q Consensus       233 -~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~  272 (319)
                       .....+|+|+-.     +..+ ..++...++++++|...+
T Consensus        95 ~~~~~g~Dvvid~-----vG~~-~~~~~a~~~l~~~G~iv~  129 (182)
T d1vj0a2          95 ITHGRGADFILEA-----TGDS-RALLEGSELLRRGGFYSV  129 (182)
T ss_dssp             HTTTSCEEEEEEC-----SSCT-THHHHHHHHEEEEEEEEE
T ss_pred             hhCCCCceEEeec-----CCch-hHHHHHHHHhcCCCEEEE
Confidence             113458998743     3222 235667778777665433

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=91.61  E-value=0.5  Score=36.34  Aligned_cols=49  Identities=12%  Similarity=0.151  Sum_probs=38.1

Q ss_pred             HhhccCCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHH
Q 020988          161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDF  209 (319)
Q Consensus       161 ~l~~~~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~  209 (319)
                      ....+++.+||=+|||. |.++.++++.....+|+++|.+++-++.+++.
T Consensus        22 ~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l   71 (174)
T d1p0fa2          22 TAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL   71 (174)
T ss_dssp             TTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT
T ss_pred             hhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc
Confidence            34567899999999986 55666666654346899999999999999874

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.42  E-value=0.096  Score=44.75  Aligned_cols=100  Identities=12%  Similarity=0.047  Sum_probs=64.5

Q ss_pred             CCeEEEEcCCcChHHHHHHhhCCCCe-EEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC---CCCCccEEE
Q 020988          167 GGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF---ASGFVDAVH  242 (319)
Q Consensus       167 ~~~VLDiGcG~G~~~~~l~~~g~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~---~~~~fD~V~  242 (319)
                      +.+|+|+-||.|.+...+.+.|...+ +.++|+++.+++.-+.+.        ++..++.+|+.++..   +...+|+++
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~--------~~~~~~~~di~~~~~~~~~~~~~Dll~   73 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF--------PHTQLLAKTIEGITLEEFDRLSFDMIL   73 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC--------TTSCEECSCGGGCCHHHHHHHCCSEEE
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHC--------CCCCcccCchhhCCHhHcCCCCccEEE
Confidence            46899999999999988888775333 679999999888777664        345567788876642   223689998


Q ss_pred             eccccc---------CCCCHH-HHHHHHHHhhcCC--CeeEEEE
Q 020988          243 AGAALH---------CWPSPS-NAASVFSSSYSLL--SICYLLQ  274 (319)
Q Consensus       243 ~~~vl~---------h~~d~~-~~l~el~rvlk~g--~~~g~~~  274 (319)
                      .+.-=.         ...|+. .++-++.++++..  +|-.+++
T Consensus        74 ggpPCq~fS~ag~~~~~~d~r~~l~~~~~~~i~~~~~kPk~~i~  117 (343)
T d1g55a_          74 MSPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPKYILL  117 (343)
T ss_dssp             ECCC------------------CHHHHHHHHGGGCSSCCSEEEE
T ss_pred             eecccccccccccccccccccccccchhhhhHhhhcCCCceeee
Confidence            753211         122322 3556777777655  4554443

>d1dl6a_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIB, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.37  E-value=0.043  Score=34.72  Aligned_cols=31  Identities=13%  Similarity=0.358  Sum_probs=21.5

Q ss_pred             CeeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      .-+.||.|++.-.....        ..+.+.|.+||.+-
T Consensus        10 ~~~~Cp~Cgs~~ii~D~--------~~Ge~vC~~CG~Vl   40 (58)
T d1dl6a_          10 PRVTCPNHPDAILVEDY--------RAGDMICPECGLVV   40 (58)
T ss_dssp             SCCSBTTBSSSCCEECS--------SSCCEECTTTCCEE
T ss_pred             cccCCCCCCCCCEEEEC--------CCCcEecccCCCEe
Confidence            46789999996432221        13678999999864

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=90.35  E-value=0.31  Score=37.14  Aligned_cols=48  Identities=23%  Similarity=0.210  Sum_probs=37.7

Q ss_pred             HhhccCCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHH
Q 020988          161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDF  209 (319)
Q Consensus       161 ~l~~~~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~  209 (319)
                      .....++.+||=+|+|. |.++.++++.. ..+++++|.+++-++.+++.
T Consensus        25 ~~~~~~G~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~~~~~~~a~~l   73 (168)
T d1uufa2          25 HWQAGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKAL   73 (168)
T ss_dssp             HTTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHH
T ss_pred             HhCCCCCCEEEEeccchHHHHHHHHhhcc-cccchhhccchhHHHHHhcc
Confidence            34567899999999985 77778887763 34888999999888877764

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=89.99  E-value=0.53  Score=34.26  Aligned_cols=64  Identities=13%  Similarity=0.204  Sum_probs=43.5

Q ss_pred             CeEEEEcCCcChHHHHH----HhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC----CCCCCcc
Q 020988          168 GLLVDVSCGSGLFSRKF----AKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----FASGFVD  239 (319)
Q Consensus       168 ~~VLDiGcG~G~~~~~l----~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----~~~~~fD  239 (319)
                      ++|+=+|+|  .++..+    .+.+.  .|+.+|.+++.++.+++.+         ++.++.+|..+..    ..-...|
T Consensus         1 M~IvI~G~G--~~G~~la~~L~~~g~--~v~vid~d~~~~~~~~~~~---------~~~vi~Gd~~~~~~l~~~~i~~a~   67 (132)
T d1lssa_           1 MYIIIAGIG--RVGYTLAKSLSEKGH--DIVLIDIDKDICKKASAEI---------DALVINGDCTKIKTLEDAGIEDAD   67 (132)
T ss_dssp             CEEEEECCS--HHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHC---------SSEEEESCTTSHHHHHHTTTTTCS
T ss_pred             CEEEEECCC--HHHHHHHHHHHHCCC--CcceecCChhhhhhhhhhh---------hhhhccCcccchhhhhhcChhhhh
Confidence            356677765  444444    44455  9999999999988876643         5678999987743    2235678


Q ss_pred             EEEec
Q 020988          240 AVHAG  244 (319)
Q Consensus       240 ~V~~~  244 (319)
                      .+++.
T Consensus        68 ~vv~~   72 (132)
T d1lssa_          68 MYIAV   72 (132)
T ss_dssp             EEEEC
T ss_pred             hhccc
Confidence            88873

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=89.96  E-value=0.22  Score=38.56  Aligned_cols=48  Identities=21%  Similarity=0.226  Sum_probs=38.8

Q ss_pred             hhccCCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHH
Q 020988          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDF  209 (319)
Q Consensus       162 l~~~~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~  209 (319)
                      ...+++.+||=+|||. |.++.++++.....+|+++|.+++-++.|++.
T Consensus        25 ~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~   73 (176)
T d1d1ta2          25 GKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV   73 (176)
T ss_dssp             SCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH
T ss_pred             hCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc
Confidence            3457899999999986 55666666665446899999999999999986

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.94  E-value=0.7  Score=35.22  Aligned_cols=92  Identities=11%  Similarity=-0.059  Sum_probs=58.3

Q ss_pred             HhhccCCCeEEEEcC--CcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC------
Q 020988          161 YFKSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------  232 (319)
Q Consensus       161 ~l~~~~~~~VLDiGc--G~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------  232 (319)
                      .....++.+||-.|+  |.|..+.++++.. ..++++++-+++..+.+++.-       ..  .++  |..+..      
T Consensus        23 ~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~~~~~~~~~~~~G-------a~--~vi--~~~~~~~~~~i~   90 (174)
T d1yb5a2          23 SACVKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQNG-------AH--EVF--NHREVNYIDKIK   90 (174)
T ss_dssp             TSCCCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTT-------CS--EEE--ETTSTTHHHHHH
T ss_pred             HhCCCCCCEEEEEecccccccccccccccc-CcccccccccccccccccccC-------cc--ccc--ccccccHHHHhh
Confidence            344568999999996  3577777777764 358999999998887777531       11  222  222221      


Q ss_pred             --CCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeE
Q 020988          233 --FASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICY  271 (319)
Q Consensus       233 --~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g  271 (319)
                        ...+.+|+|+..     ..  ...++...++++++|..-
T Consensus        91 ~~t~~~g~d~v~d~-----~g--~~~~~~~~~~l~~~G~iv  124 (174)
T d1yb5a2          91 KYVGEKGIDIIIEM-----LA--NVNLSKDLSLLSHGGRVI  124 (174)
T ss_dssp             HHHCTTCEEEEEES-----CH--HHHHHHHHHHEEEEEEEE
T ss_pred             hhhccCCceEEeec-----cc--HHHHHHHHhccCCCCEEE
Confidence              134679999764     21  235667777777765433

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=89.61  E-value=1.1  Score=33.98  Aligned_cols=98  Identities=13%  Similarity=0.071  Sum_probs=61.8

Q ss_pred             HhhccCCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-------
Q 020988          161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-------  232 (319)
Q Consensus       161 ~l~~~~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-------  232 (319)
                      ....+++.+||=+|||. |.++.++++......|+++|.++.-++.+++.-.         -.++..+-...+       
T Consensus        23 ~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa---------~~~i~~~~~~~~~~~~~~~   93 (176)
T d2fzwa2          23 TAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGA---------TECINPQDFSKPIQEVLIE   93 (176)
T ss_dssp             TTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTC---------SEEECGGGCSSCHHHHHHH
T ss_pred             hhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCC---------cEEEeCCchhhHHHHHHHH
Confidence            34567899999999973 4566666666434689999999998888887421         122221111111       


Q ss_pred             CCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988          233 FASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLL  273 (319)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~  273 (319)
                      ...+.+|+|+-.     +.. ...++....++++++....+
T Consensus        94 ~~~~g~D~vid~-----~G~-~~~~~~~~~~~~~g~~~~~v  128 (176)
T d2fzwa2          94 MTDGGVDYSFEC-----IGN-VKVMRAALEACHKGWGVSVV  128 (176)
T ss_dssp             HTTSCBSEEEEC-----SCC-HHHHHHHHHTBCTTTCEEEE
T ss_pred             HcCCCCcEeeec-----CCC-HHHHHHHHHhhcCCceeEEE
Confidence            123568998663     323 34577788888888765544

>d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Leucine carboxy methyltransferase Ppm1
domain: Leucine carboxy methyltransferase Ppm1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.54  E-value=3.6  Score=34.81  Aligned_cols=119  Identities=13%  Similarity=0.175  Sum_probs=69.3

Q ss_pred             HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcC------------------ccC
Q 020988          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN------------------TIL  217 (319)
Q Consensus       156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~------------------~~~  217 (319)
                      ..+..++...+...|+-+|||.=.....+....++..++=+|.-+ .++.=++.+.+..                  ...
T Consensus        86 ~~v~~Fl~~~~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~p~-vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~  164 (328)
T d1rjda_          86 AAILEFLVANEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNE-SVELKNSILRESEILRISLGLSKEDTAKSPFLID  164 (328)
T ss_dssp             HHHHHHHHHCSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHH-HHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEE
T ss_pred             HHHHHHHHHCCCcEEEEeCCccchHHHHhhccCCCcEEEECCcHH-HHHHHHHHHHhchhhhhhccccccccccccccCC
Confidence            455555655666789999999988777777766655667777644 3332222221100                  011


Q ss_pred             CCCeEEEEcCCCCCC---------CCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988          218 TSNLALVRADVCRLP---------FASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFR  276 (319)
Q Consensus       218 ~~~i~~~~~d~~~lp---------~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~  276 (319)
                      ..+.+++.+|+.++.         +....--++++-.|+.++ +++..-+-+..+.+.......++++
T Consensus       165 s~~y~lv~~DL~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl-~~~~~~~li~~~~~~f~~~~~i~YE  231 (328)
T d1rjda_         165 QGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYM-HNNESQLLINTIMSKFSHGLWISYD  231 (328)
T ss_dssp             CSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGS-CHHHHHHHHHHHHHHCSSEEEEEEE
T ss_pred             CCCeEEEecCCCCcHhhHHHHHccCCCCCCeEEEEeeehhcC-CHHHHHHHHHHHHHhCCCceEEEec
Confidence            357888999987743         122233467777799998 4554434444444444444555554

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=88.94  E-value=0.63  Score=35.13  Aligned_cols=83  Identities=7%  Similarity=0.017  Sum_probs=49.3

Q ss_pred             CeEEEEcCCc--ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecc
Q 020988          168 GLLVDVSCGS--GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (319)
Q Consensus       168 ~~VLDiGcG~--G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (319)
                      ++|.=||+|.  +.++..+.+.+.  +|+++|.+++.++.+++.-         .+.....+.+.+    ...|+|+..-
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~--~V~~~d~~~~~~~~a~~~~---------~~~~~~~~~~~~----~~~DiIilav   65 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGH--YLIGVSRQQSTCEKAVERQ---------LVDEAGQDLSLL----QTAKIIFLCT   65 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHTT---------SCSEEESCGGGG----TTCSEEEECS
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCC--EEEEEECCchHHHHHHHhh---------ccceeeeecccc----cccccccccC
Confidence            3577788884  446677778777  9999999998888776631         122222232222    4679988642


Q ss_pred             cccCCCCHHHHHHHHHHhhcCCC
Q 020988          246 ALHCWPSPSNAASVFSSSYSLLS  268 (319)
Q Consensus       246 vl~h~~d~~~~l~el~rvlk~g~  268 (319)
                      -..   ..+..++++...+++..
T Consensus        66 p~~---~~~~vl~~l~~~l~~~~   85 (165)
T d2f1ka2          66 PIQ---LILPTLEKLIPHLSPTA   85 (165)
T ss_dssp             CHH---HHHHHHHHHGGGSCTTC
T ss_pred             cHh---hhhhhhhhhhhhccccc
Confidence            211   12344555555555554

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=88.69  E-value=0.56  Score=35.58  Aligned_cols=95  Identities=18%  Similarity=0.105  Sum_probs=57.6

Q ss_pred             HhhccCCCeEEEEcC-C-cChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC------
Q 020988          161 YFKSAQGGLLVDVSC-G-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------  232 (319)
Q Consensus       161 ~l~~~~~~~VLDiGc-G-~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------  232 (319)
                      .....++.+||=+|+ | .|.++..+++......|+++|.+++-++.+++.-.        . .++..+-.+..      
T Consensus        22 ~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga--------~-~~i~~~~~~~~~~~~~~   92 (170)
T d1jvba2          22 KASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGA--------D-YVINASMQDPLAEIRRI   92 (170)
T ss_dssp             HTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTC--------S-EEEETTTSCHHHHHHHH
T ss_pred             HhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCC--------c-eeeccCCcCHHHHHHHH
Confidence            345678999999997 3 46666666665444699999999998888887411        1 22332222210      


Q ss_pred             CCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCee
Q 020988          233 FASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSIC  270 (319)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~  270 (319)
                      ...+.||+|+-.     ... ...++...++++++|..
T Consensus        93 ~~~~~~d~vid~-----~g~-~~~~~~a~~~l~~~G~i  124 (170)
T d1jvba2          93 TESKGVDAVIDL-----NNS-EKTLSVYPKALAKQGKY  124 (170)
T ss_dssp             TTTSCEEEEEES-----CCC-HHHHTTGGGGEEEEEEE
T ss_pred             hhcccchhhhcc-----ccc-chHHHhhhhhcccCCEE
Confidence            123569988764     322 23345555666655543

>d1pfta_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIB, N-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.68  E-value=0.086  Score=32.15  Aligned_cols=29  Identities=28%  Similarity=0.579  Sum_probs=19.7

Q ss_pred             eeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      ..||.|++.-...+.        .++.+.|.+||.+-
T Consensus         6 ~~Cp~Cgs~~iv~D~--------~~Ge~vC~~CG~Vi   34 (50)
T d1pfta_           6 KVCPACESAELIYDP--------ERGEIVCAKCGYVI   34 (50)
T ss_dssp             CSCTTTSCCCEEEET--------TTTEEEESSSCCBC
T ss_pred             ccCcCCCCCcEEEEC--------CCCeEecccCCcEe
Confidence            479999985332211        13678999999864

>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: IBR domain
domain: Ring finger protein 31
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.38  E-value=0.2  Score=32.92  Aligned_cols=34  Identities=18%  Similarity=0.447  Sum_probs=25.5

Q ss_pred             ccccCeeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988           55 ELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        55 ~~~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      ..+.++-.||.|+..+...+.         .....|+.||+.|
T Consensus        13 ~~~~~~k~CP~C~~~~~~~~~---------~~~~~C~~C~~~f   46 (73)
T d2ct7a1          13 MRDPKFLWCAQCSFGFIYERE---------QLEATCPQCHQTF   46 (73)
T ss_dssp             CSCCCEECCSSSCCCEECCCS---------CSCEECTTTCCEE
T ss_pred             HHCCCCCCCCCCCCEeEECCC---------CCEEEcCCCCCeE
Confidence            345568889999998765432         2467899999998

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=88.31  E-value=3.9  Score=34.05  Aligned_cols=109  Identities=15%  Similarity=0.047  Sum_probs=63.6

Q ss_pred             HHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-C---
Q 020988          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P---  232 (319)
Q Consensus       157 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p---  232 (319)
                      .+.+.+.. ....|+.+|||.=.-...+ ......+++=+|. +++++.-++.+.+.+.....+..++..|+.+- +   
T Consensus        81 ~~~~~~~~-g~~qvV~LGaGlDTr~~Rl-~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L  157 (297)
T d2uyoa1          81 YFNNAVID-GIRQFVILASGLDSRAYRL-DWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPAL  157 (297)
T ss_dssp             HHHHHHHT-TCCEEEEETCTTCCHHHHS-CCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHH
T ss_pred             HHHHHHhh-CCCeEEEeCcccCChhhhc-CCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHH
Confidence            34444433 3356777999987665544 2234557888885 77787777777665433345677888888652 1   


Q ss_pred             ----CCCCCccEEEecccccCCCCH--HHHHHHHHHhhcCCC
Q 020988          233 ----FASGFVDAVHAGAALHCWPSP--SNAASVFSSSYSLLS  268 (319)
Q Consensus       233 ----~~~~~fD~V~~~~vl~h~~d~--~~~l~el~rvlk~g~  268 (319)
                          +....--++++-+++.+++..  ..+++.+.+...+|.
T Consensus       158 ~~~g~d~~~ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS  199 (297)
T d2uyoa1         158 RSAGFDPSARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGS  199 (297)
T ss_dssp             HHTTCCTTSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTC
T ss_pred             HhcCCCCCCCEEEEEccccccCCHHHHHHHHHHHHHhCCCCC
Confidence                222233455556678888432  244455555544553

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=87.97  E-value=1.4  Score=35.95  Aligned_cols=78  Identities=15%  Similarity=0.202  Sum_probs=59.2

Q ss_pred             CCCeEEEEcCCcC---hHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC----------
Q 020988          166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----------  232 (319)
Q Consensus       166 ~~~~VLDiGcG~G---~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----------  232 (319)
                      +++++|=.|++.|   ..+..+++.|.  +|+.+|.++..++.+.+.+...    ...+.++.+|+.+..          
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~--~V~i~~r~~~~l~~~~~~~~~~----~~~~~~~~~D~s~~~~~~~~~~~~~   78 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGA--RVYTCSRNEKELDECLEIWREK----GLNVEGSVCDLLSRTERDKLMQTVA   78 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc----CCCceEEEeecCCHHHHHHHHHHHH
Confidence            5789999999877   35667778787  9999999999888888877764    467888899997632          


Q ss_pred             -CCCCCccEEEecccccC
Q 020988          233 -FASGFVDAVHAGAALHC  249 (319)
Q Consensus       233 -~~~~~fD~V~~~~vl~h  249 (319)
                       ..++..|+++.+..+.+
T Consensus        79 ~~~~g~idilinnag~~~   96 (258)
T d1ae1a_          79 HVFDGKLNILVNNAGVVI   96 (258)
T ss_dssp             HHTTSCCCEEEECCCCCC
T ss_pred             HHhCCCcEEEeccccccc
Confidence             11357889887655444

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=87.86  E-value=0.44  Score=40.25  Aligned_cols=103  Identities=11%  Similarity=0.034  Sum_probs=68.7

Q ss_pred             CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC-CCCccEEEec
Q 020988          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVHAG  244 (319)
Q Consensus       166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~~fD~V~~~  244 (319)
                      .+.+|||+=||-|.+...+.+.|. .-+.++|+++.+++.-+.+...          ...+|+.++... -..+|+|+.+
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~aG~-~~v~a~e~d~~a~~~~~~N~~~----------~~~~Di~~~~~~~~~~~Dll~gg   78 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESCGA-ECVYSNEWDKYAQEVYEMNFGE----------KPEGDITQVNEKTIPDHDILCAG   78 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTC-EEEEEECCCHHHHHHHHHHHSC----------CCBSCGGGSCGGGSCCCSEEEEE
T ss_pred             CCCeEEEECccccHHHHHHHHCCC-eEEEEEeCCHHHHHHHHHHCCC----------CCcCchhcCchhhcceeeeeecc
Confidence            568999999999999999988885 3567799999999988887632          124677765422 2468999874


Q ss_pred             cc-----cc----CCCCHH-HHHHHHHHhhcCCCeeEEEEeeccc
Q 020988          245 AA-----LH----CWPSPS-NAASVFSSSYSLLSICYLLQFRYTK  279 (319)
Q Consensus       245 ~v-----l~----h~~d~~-~~l~el~rvlk~g~~~g~~~~~~~~  279 (319)
                      .-     .-    ...|+. .++.++.++++...|-.+++=.+..
T Consensus        79 pPCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~kP~~~~lENV~~  123 (327)
T d2c7pa1          79 FPCQAFSISGKQKGFEDSRGTLFFDIARIVREKKPKVVFMENVKN  123 (327)
T ss_dssp             CCCTTTCTTSCCCGGGSTTSCHHHHHHHHHHHHCCSEEEEEEEGG
T ss_pred             cccchhhhhhhhcCCcccchhHHHHHHHHHhccCCcEEecccchh
Confidence            31     11    122322 4566777776666666555443333

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=87.85  E-value=0.12  Score=40.02  Aligned_cols=98  Identities=14%  Similarity=0.100  Sum_probs=66.4

Q ss_pred             cCCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 020988          165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (319)
Q Consensus       165 ~~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (319)
                      .++.+|+=||+|. |..+...+... ..+|+.+|.+++.++..+..+..       ++.+...+-..+.-.-...|+|+.
T Consensus        30 v~pa~V~ViGaGvaG~~A~~~A~~l-GA~V~~~D~~~~~l~~l~~~~~~-------~~~~~~~~~~~l~~~~~~aDivI~  101 (168)
T d1pjca1          30 VKPGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINVERLSYLETLFGS-------RVELLYSNSAEIETAVAEADLLIG  101 (168)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHGG-------GSEEEECCHHHHHHHHHTCSEEEE
T ss_pred             CCCcEEEEECCChHHHHHHHHHhhC-CCEEEEEeCcHHHHHHHHHhhcc-------cceeehhhhhhHHHhhccCcEEEE
Confidence            3678999999996 66666555553 35999999999999988877643       455655544333212246799998


Q ss_pred             cccccCCCCHHHHHHHHHHhhcCCCee
Q 020988          244 GAALHCWPSPSNAASVFSSSYSLLSIC  270 (319)
Q Consensus       244 ~~vl~h~~d~~~~l~el~rvlk~g~~~  270 (319)
                      .--+.--+-|.-.-+++.+..|||...
T Consensus       102 aalipG~~aP~lIt~~mv~~Mk~GSVI  128 (168)
T d1pjca1         102 AVLVPGRRAPILVPASLVEQMRTGSVI  128 (168)
T ss_dssp             CCCCTTSSCCCCBCHHHHTTSCTTCEE
T ss_pred             eeecCCcccCeeecHHHHhhcCCCcEE
Confidence            765554444554556777777777643

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.50  E-value=1.5  Score=35.43  Aligned_cols=80  Identities=19%  Similarity=0.173  Sum_probs=61.7

Q ss_pred             cCCCeEEEEcCCcC---hHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC---------
Q 020988          165 AQGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---------  232 (319)
Q Consensus       165 ~~~~~VLDiGcG~G---~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---------  232 (319)
                      ..|+.+|=-|++.|   .++..+++.|.  +|+.+|.+++.++...+.+...    ..++..+.+|+.+..         
T Consensus         5 l~Gkv~lITGas~GIG~~ia~~la~~G~--~V~l~~r~~~~l~~~~~~~~~~----~~~~~~~~~Dvs~~~~v~~~~~~i   78 (244)
T d1yb1a_           5 VTGEIVLITGAGHGIGRLTAYEFAKLKS--KLVLWDINKHGLEETAAKCKGL----GAKVHTFVVDCSNREDIYSSAKKV   78 (244)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc----CCcEEEEEeeCCCHHHHHHHHHHH
Confidence            35778888899887   36777888887  9999999999998888887664    467889999998743         


Q ss_pred             -CCCCCccEEEecccccCC
Q 020988          233 -FASGFVDAVHAGAALHCW  250 (319)
Q Consensus       233 -~~~~~fD~V~~~~vl~h~  250 (319)
                       -..+..|+++.+..+.+.
T Consensus        79 ~~~~g~idilinnag~~~~   97 (244)
T d1yb1a_          79 KAEIGDVSILVNNAGVVYT   97 (244)
T ss_dssp             HHHTCCCSEEEECCCCCCC
T ss_pred             HHHcCCCceeEeecccccc
Confidence             124578999887765544

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.06  E-value=0.93  Score=34.09  Aligned_cols=47  Identities=17%  Similarity=0.234  Sum_probs=38.1

Q ss_pred             hhccCCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHH
Q 020988          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDF  209 (319)
Q Consensus       162 l~~~~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~  209 (319)
                      ...+++.+||=+|+|. |.++.++++.. ..+|+++|.+++-++.+++.
T Consensus        23 ~~~~~g~~VlV~GaG~vG~~~~~~ak~~-G~~Vi~~~~~~~~~~~a~~~   70 (166)
T d1llua2          23 TNARPGQWVAISGIGGLGHVAVQYARAM-GLHVAAIDIDDAKLELARKL   70 (166)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHT
T ss_pred             hCCCCCCEEEEeeccccHHHHHHHHHHc-CCccceecchhhHHHhhhcc
Confidence            4567899999999985 77777777774 36999999999999888763

>d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD
species: Escherichia coli [TaxId: 562]

Probab=85.74  E-value=0.046  Score=45.81  Aligned_cols=30  Identities=30%  Similarity=0.520  Sum_probs=22.1

Q ss_pred             eeccCCCccccccCCCCCcccceecCceeeCccCCccc
Q 020988           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (319)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~   98 (319)
                      .+||.|++.+...+        +......|++|+|.|.
T Consensus         3 ~~C~~C~~~~~~~~--------l~~~~~vC~~C~~h~~   32 (263)
T d2f9yb1           3 TKCDSCGQVLYRAE--------LERNLEVCPKCDHHMR   32 (263)
T ss_dssp             ECCTTTCCCEETTH--------HHHTTTBCTTTCCBCC
T ss_pred             CcCCCCcceeeHHH--------HHHhCCCCcCCCCCCC
Confidence            47999998665432        3346779999999983

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=85.43  E-value=0.46  Score=39.05  Aligned_cols=78  Identities=18%  Similarity=0.083  Sum_probs=54.0

Q ss_pred             CCCeEEEEcCCcChHHHHHHhhC----------------------------------------CCCeEEEEeCCHHHHHH
Q 020988          166 QGGLLVDVSCGSGLFSRKFAKSG----------------------------------------TYSGVVALDFSENMLRQ  205 (319)
Q Consensus       166 ~~~~VLDiGcG~G~~~~~l~~~g----------------------------------------~~~~v~gvD~s~~~l~~  205 (319)
                      .+..++|--||+|.++..++-..                                        ....++|.|+++.+++.
T Consensus        50 ~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~  129 (249)
T d1o9ga_          50 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  129 (249)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHH
Confidence            45579999999999987765421                                        01246789999999888


Q ss_pred             HH---HHHhhcCccCCCCeEEEEcCCCCCC-C----CCCCccEEEecc
Q 020988          206 CY---DFIKQDNTILTSNLALVRADVCRLP-F----ASGFVDAVHAGA  245 (319)
Q Consensus       206 a~---~~~~~~~~~~~~~i~~~~~d~~~lp-~----~~~~fD~V~~~~  245 (319)
                      |+   +++...+  ....+.+.+.|+.+.. .    .....++|+++-
T Consensus       130 A~~~r~n~~~Ag--l~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNP  175 (249)
T d1o9ga_         130 ARRLRERLTAEG--GALPCAIRTADVFDPRALSAVLAGSAPDVVLTDL  175 (249)
T ss_dssp             HHHHHHHHHHTT--SSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEEC
T ss_pred             HHHHHHHHHHcC--CCceeeeeecchhccCcchhccCCCCCCEEEeCC
Confidence            84   4555442  4567889999986643 1    235578999864

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=85.02  E-value=0.93  Score=39.76  Aligned_cols=50  Identities=12%  Similarity=0.141  Sum_probs=40.5

Q ss_pred             ccCCCeEEEEcCCcChHHHHHHhh--CCCCeEEEEeCCHHHHHHHHHHHhhc
Q 020988          164 SAQGGLLVDVSCGSGLFSRKFAKS--GTYSGVVALDFSENMLRQCYDFIKQD  213 (319)
Q Consensus       164 ~~~~~~VLDiGcG~G~~~~~l~~~--g~~~~v~gvD~s~~~l~~a~~~~~~~  213 (319)
                      ..++..++|||+-.|.++..+++.  +...+|+++|+++...+..+++++..
T Consensus       210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n  261 (395)
T d2py6a1         210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRY  261 (395)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHT
T ss_pred             cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhc
Confidence            356789999999999988777654  22358999999999999999887653

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.45  E-value=1.7  Score=35.18  Aligned_cols=87  Identities=15%  Similarity=0.206  Sum_probs=62.5

Q ss_pred             CCCeEEEEcCCcCh---HHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC----------
Q 020988          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----------  232 (319)
Q Consensus       166 ~~~~VLDiGcG~G~---~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----------  232 (319)
                      .|+.+|=-|++.|.   .+..+++.|.  +|+.+|.+++.++.+.+.+.+..  ...++.++.+|+.+..          
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~~   77 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGA--KVALVDWNLEAGVQCKAALHEQF--EPQKTLFIQCDVADQQQLRDTFRKVV   77 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTTS--CGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhc--CCCcEEEEEeecCCHHHHHHHHHHHH
Confidence            36788888987763   5566677777  99999999998888877765421  2346888999997742          


Q ss_pred             CCCCCccEEEecccccCCCCHHHH
Q 020988          233 FASGFVDAVHAGAALHCWPSPSNA  256 (319)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~  256 (319)
                      -.-+..|+++.+..+....+.++.
T Consensus        78 ~~~G~iDilVnnAg~~~~~~~~~~  101 (254)
T d2gdza1          78 DHFGRLDILVNNAGVNNEKNWEKT  101 (254)
T ss_dssp             HHHSCCCEEEECCCCCCSSSHHHH
T ss_pred             HHcCCcCeecccccccccccchhe
Confidence            012579999998877777666544

>d1twfl_ g.41.9.2 (L:) RBP12 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: RNA polymerase subunits
family: RBP12 subunit of RNA polymerase II
domain: RBP12 subunit of RNA polymerase II
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.42  E-value=0.25  Score=29.18  Aligned_cols=28  Identities=18%  Similarity=0.578  Sum_probs=21.4

Q ss_pred             eeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      .+.|-.|+........          ..++|.+||+.-
T Consensus         4 ~YiCgeCg~~~~l~~~----------d~irCreCG~RI   31 (46)
T d1twfl_           4 KYICAECSSKLSLSRT----------DAVRCKDCGHRI   31 (46)
T ss_dssp             CEECSSSCCEECCCTT----------STTCCSSSCCCC
T ss_pred             EEEcccCCCceEeCCC----------CcEEeccCCcEE
Confidence            4679999997655542          668999999975

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.19  E-value=1.9  Score=35.09  Aligned_cols=81  Identities=17%  Similarity=0.140  Sum_probs=59.5

Q ss_pred             cCCCeEEEEcCCcCh---HHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC---------
Q 020988          165 AQGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---------  232 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~---~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---------  232 (319)
                      .+++.+|=.|++.|.   .+..+++.|.  +|+.+|.+++.++.+.+.++..+  ...++.++.+|+.+..         
T Consensus         8 lk~Kv~lITGas~GIG~aiA~~la~~G~--~Vv~~~r~~~~l~~~~~~l~~~~--~~~~~~~~~~Dls~~~~v~~~v~~~   83 (257)
T d1xg5a_           8 WRDRLALVTGASGGIGAAVARALVQQGL--KVVGCARTVGNIEELAAECKSAG--YPGTLIPYRCDLSNEEDILSMFSAI   83 (257)
T ss_dssp             GTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CSSEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CCceEEEEEccCCCHHHHHHHHHHH
Confidence            357899999998873   5666777777  99999999999998888777642  2246788899997632         


Q ss_pred             -CCCCCccEEEecccccC
Q 020988          233 -FASGFVDAVHAGAALHC  249 (319)
Q Consensus       233 -~~~~~fD~V~~~~vl~h  249 (319)
                       -.-+..|+++.+....+
T Consensus        84 ~~~~g~iD~lVnnAg~~~  101 (257)
T d1xg5a_          84 RSQHSGVDICINNAGLAR  101 (257)
T ss_dssp             HHHHCCCSEEEECCCCCC
T ss_pred             HHhcCCCCEEEecccccC
Confidence             01257899988765543

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=84.08  E-value=1  Score=36.83  Aligned_cols=79  Identities=23%  Similarity=0.254  Sum_probs=57.6

Q ss_pred             cCCCeEEEEcCCcCh---HHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC---------
Q 020988          165 AQGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---------  232 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~---~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---------  232 (319)
                      .+++++|=-|.+.|.   .+..+++.|.  +|+.+|.+++.++.+.+.++..    ..++.++.+|+.+..         
T Consensus         9 L~gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~l~~~----g~~~~~~~~Dvs~~~~~~~~~~~~   82 (255)
T d1fmca_           9 LDGKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQL----GGQAFACRCDITSEQELSALADFA   82 (255)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHc----CCcEEEEEccCCCHHHHHHHHHHH
Confidence            357888888877663   4556666676  9999999999998888887764    357888999997632         


Q ss_pred             -CCCCCccEEEecccccC
Q 020988          233 -FASGFVDAVHAGAALHC  249 (319)
Q Consensus       233 -~~~~~fD~V~~~~vl~h  249 (319)
                       -.-+..|+++.+..+.+
T Consensus        83 ~~~~g~iDilvnnAG~~~  100 (255)
T d1fmca_          83 ISKLGKVDILVNNAGGGG  100 (255)
T ss_dssp             HHHHSSCCEEEECCCCCC
T ss_pred             HHHcCCCCEeeeCCcCCC
Confidence             01257999998765443

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=83.95  E-value=0.3  Score=30.11  Aligned_cols=26  Identities=15%  Similarity=0.462  Sum_probs=19.7

Q ss_pred             eeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (319)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f   97 (319)
                      ..||+|..++...+           ....++.|+|.|
T Consensus         6 ~~C~ICl~~~~~~~-----------~~~~l~~C~H~F   31 (55)
T d1iyma_           6 VECAVCLAELEDGE-----------EARFLPRCGHGF   31 (55)
T ss_dssp             CCCTTTCCCCCTTS-----------CCEECSSSCCEE
T ss_pred             CCCeEECccccCCC-----------EEEEeCCCCCcc
Confidence            46999999876543           345678899988

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=83.66  E-value=0.81  Score=34.75  Aligned_cols=49  Identities=14%  Similarity=0.089  Sum_probs=36.8

Q ss_pred             HhhccCCCeEEEEcCCcCh-HHHHHHhhCCCCeEEEEeCCHHHHHHHHHH
Q 020988          161 YFKSAQGGLLVDVSCGSGL-FSRKFAKSGTYSGVVALDFSENMLRQCYDF  209 (319)
Q Consensus       161 ~l~~~~~~~VLDiGcG~G~-~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~  209 (319)
                      ....+++.+||=+|+|.+. ....+++......|+++|.+++-++.+++.
T Consensus        23 ~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~   72 (175)
T d1cdoa2          23 TAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF   72 (175)
T ss_dssp             TTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred             hhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHc
Confidence            3456789999999999844 444455554456899999999999888874

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=83.19  E-value=1.6  Score=37.64  Aligned_cols=83  Identities=13%  Similarity=0.146  Sum_probs=50.0

Q ss_pred             CeEEEEcCCcChHHHHHHhh----------------CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCC--eEEEEcCCC
Q 020988          168 GLLVDVSCGSGLFSRKFAKS----------------GTYSGVVALDFSENMLRQCYDFIKQDNTILTSN--LALVRADVC  229 (319)
Q Consensus       168 ~~VLDiGcG~G~~~~~l~~~----------------g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~--i~~~~~d~~  229 (319)
                      -+|.|+||.+|..+..+...                -+..+|+--|+-.+--...-+.+...+. ..++  +..+.+.+.
T Consensus        53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~-~~~~~f~~gvpGSFY  131 (359)
T d1m6ex_          53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEND-VDGVCFINGVPGSFY  131 (359)
T ss_dssp             ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCS-CTTCEEEEEEESCSS
T ss_pred             eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhcccccc-CCCCeEEEecCCchh
Confidence            56999999999877322111                1345677777755444333333322110 0111  233445666


Q ss_pred             CCCCCCCCccEEEecccccCCC
Q 020988          230 RLPFASGFVDAVHAGAALHCWP  251 (319)
Q Consensus       230 ~lp~~~~~fD~V~~~~vl~h~~  251 (319)
                      .-=|++++.|++++..+|||+.
T Consensus       132 ~rLfP~~Slh~~~Ss~alHWLS  153 (359)
T d1m6ex_         132 GRLFPRNTLHFIHSSYSLMWLS  153 (359)
T ss_dssp             SCCSCTTCBSCEEEESCTTBCS
T ss_pred             hhcCCCCceEEeeehhhhhhhh
Confidence            6557889999999999999974

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.85  E-value=2.9  Score=33.55  Aligned_cols=76  Identities=20%  Similarity=0.163  Sum_probs=55.8

Q ss_pred             cCCCeEEEEcCCcC---hHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC------CCC
Q 020988          165 AQGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------FAS  235 (319)
Q Consensus       165 ~~~~~VLDiGcG~G---~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------~~~  235 (319)
                      ..|+++|=.|++.|   ..+..+++.|.  +|+.+|.+++.++...+.+        .++..++.|+.+..      -.-
T Consensus         5 L~GK~~lITGas~GIG~aia~~la~~G~--~V~~~~r~~~~l~~~~~~~--------~~~~~~~~Dv~d~~~v~~~~~~~   74 (244)
T d1pr9a_           5 LAGRRVLVTGAGKGIGRGTVQALHATGA--RVVAVSRTQADLDSLVREC--------PGIEPVCVDLGDWEATERALGSV   74 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHS--------TTCEEEECCTTCHHHHHHHHTTC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHhc--------CCCeEEEEeCCCHHHHHHHHHHh
Confidence            36789999999887   46677777777  9999999998877766543        46778888986632      122


Q ss_pred             CCccEEEecccccCC
Q 020988          236 GFVDAVHAGAALHCW  250 (319)
Q Consensus       236 ~~fD~V~~~~vl~h~  250 (319)
                      ++.|+++.+..+.+.
T Consensus        75 g~iDilVnnAg~~~~   89 (244)
T d1pr9a_          75 GPVDLLVNNAAVALL   89 (244)
T ss_dssp             CCCCEEEECCCCCCC
T ss_pred             CCceEEEeccccccc
Confidence            579999987655443

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=82.76  E-value=0.74  Score=33.22  Aligned_cols=60  Identities=22%  Similarity=0.165  Sum_probs=44.4

Q ss_pred             CCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC----CCCCCccEEEec
Q 020988          175 CGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----FASGFVDAVHAG  244 (319)
Q Consensus       175 cG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----~~~~~fD~V~~~  244 (319)
                      ||.|..+..+.+......++.+|.+++..+..+.          .++.++.||..+..    ..-...+.+++.
T Consensus         6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~----------~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~   69 (129)
T d2fy8a1           6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLR----------SGANFVHGDPTRVSDLEKANVRGARAVIVN   69 (129)
T ss_dssp             ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHH----------TTCEEEESCTTSHHHHHHTTCTTCSEEEEC
T ss_pred             ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHh----------cCccccccccCCHHHHHHhhhhcCcEEEEe
Confidence            6778888888887655689999999998876654          26789999987632    223467777763

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=82.66  E-value=1.4  Score=33.24  Aligned_cols=46  Identities=26%  Similarity=0.307  Sum_probs=35.5

Q ss_pred             ccCCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHH
Q 020988          164 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDF  209 (319)
Q Consensus       164 ~~~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~  209 (319)
                      ..++.+||-+|+|. |.++.++++......++++|.+++-++.+++.
T Consensus        30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~   76 (172)
T d1h2ba2          30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL   76 (172)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT
T ss_pred             cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhc
Confidence            46789999999986 55556666653345899999999988888874

>d1wiia_ g.41.3.4 (A:) Hypothetical UPF0222 protein MGC4549 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Putative zinc binding domain
domain: Hypothetical UPF0222 protein MGC4549
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.32  E-value=0.28  Score=33.14  Aligned_cols=32  Identities=22%  Similarity=0.646  Sum_probs=21.9

Q ss_pred             CeeeccCCCcc------ccccCCCCCcccceecCceeeCccCCcccc
Q 020988           59 DLFSCPICYEP------LIRKGPTGLTLGAIYRSGFKCRKCDKTYSS   99 (319)
Q Consensus        59 ~~l~CP~C~~~------l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~   99 (319)
                      ..|.||.|+..      +....       .  .+.+.|..||..|..
T Consensus        22 t~F~CPfCnh~~sV~vk~dkk~-------~--~g~l~C~vCg~~~~~   59 (85)
T d1wiia_          22 TQFTCPFCNHEKSCDVKMDRAR-------N--TGVISCTVCLEEFQT   59 (85)
T ss_dssp             SCCCCTTTCCSSCEEEEEETTT-------T--EEEEEESSSCCEEEE
T ss_pred             ceEcCCCCCCCCeEEEEEEecC-------C--EEEEEEecCCCeEEe
Confidence            46999999952      22221       1  267899999999844

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=81.91  E-value=0.63  Score=33.72  Aligned_cols=63  Identities=16%  Similarity=0.198  Sum_probs=38.6

Q ss_pred             EEEEcCCc-Ch-HHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC----CCCCccEEEe
Q 020988          170 LVDVSCGS-GL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF----ASGFVDAVHA  243 (319)
Q Consensus       170 VLDiGcG~-G~-~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~----~~~~fD~V~~  243 (319)
                      ++=+|+|. |. +...|.+.|.  .|+.+|.+++.++.+++.          ....+.+|..+...    .-...|.|++
T Consensus         3 ~iIiG~G~~G~~la~~L~~~g~--~vvvid~d~~~~~~~~~~----------~~~~~~gd~~~~~~l~~a~i~~a~~vi~   70 (134)
T d2hmva1           3 FAVIGLGRFGGSIVKELHRMGH--EVLAVDINEEKVNAYASY----------ATHAVIANATEENELLSLGIRNFEYVIV   70 (134)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC--CCEEEESCHHHHHHTTTT----------CSEEEECCTTCTTHHHHHTGGGCSEEEE
T ss_pred             EEEECCCHHHHHHHHHHHHCCC--eEEEecCcHHHHHHHHHh----------CCcceeeecccchhhhccCCccccEEEE
Confidence            44455552 32 2334444455  899999999988877542          44677889877541    1235677765


Q ss_pred             c
Q 020988          244 G  244 (319)
Q Consensus       244 ~  244 (319)
                      .
T Consensus        71 ~   71 (134)
T d2hmva1          71 A   71 (134)
T ss_dssp             C
T ss_pred             E
Confidence            3

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=80.66  E-value=3.3  Score=33.52  Aligned_cols=75  Identities=17%  Similarity=0.256  Sum_probs=57.0

Q ss_pred             CCCeEEEEcCCcCh---HHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC----------
Q 020988          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----------  232 (319)
Q Consensus       166 ~~~~VLDiGcG~G~---~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----------  232 (319)
                      +++.+|=-|.+.|.   .+..+++.|.  +|+.+|.+++.++.+.+.++..    ..++..+.+|+.+..          
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~----g~~~~~~~~Dv~~~~~v~~~~~~~~   77 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGT--AIALLDMNREALEKAEASVREK----GVEARSYVCDVTSEEAVIGTVDSVV   77 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTT----TSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc----CCcEEEEEccCCCHHHHHHHHHHHH
Confidence            57889988987763   5677777777  9999999999999988888664    457888999987632          


Q ss_pred             CCCCCccEEEeccc
Q 020988          233 FASGFVDAVHAGAA  246 (319)
Q Consensus       233 ~~~~~fD~V~~~~v  246 (319)
                      -.-+..|+++.+..
T Consensus        78 ~~~g~iDilVnnaG   91 (260)
T d1zema1          78 RDFGKIDFLFNNAG   91 (260)
T ss_dssp             HHHSCCCEEEECCC
T ss_pred             HHhCCCCeehhhhc
Confidence            01257899887654

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=80.23  E-value=2.9  Score=34.04  Aligned_cols=76  Identities=17%  Similarity=0.291  Sum_probs=56.1

Q ss_pred             cCCCeEEEEcCCcCh---HHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-----C---
Q 020988          165 AQGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F---  233 (319)
Q Consensus       165 ~~~~~VLDiGcG~G~---~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~---  233 (319)
                      .+++.+|=.|++.|.   .+..+++.|.  +|+.+|.+++.++.+.+.+..     ..++.++.+|+.+..     +   
T Consensus         4 L~gKvalITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~-----~~~~~~~~~Dv~~~~~v~~~~~~~   76 (268)
T d2bgka1           4 LQDKVAIITGGAGGIGETTAKLFVRYGA--KVVIADIADDHGQKVCNNIGS-----PDVISFVHCDVTKDEDVRNLVDTT   76 (268)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCC-----TTTEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhcC-----CCceEEEEccCCCHHHHHHHHHHH
Confidence            357889999988773   4566677776  999999999988888877754     346888899987632     0   


Q ss_pred             --CCCCccEEEecccc
Q 020988          234 --ASGFVDAVHAGAAL  247 (319)
Q Consensus       234 --~~~~fD~V~~~~vl  247 (319)
                        .-+..|+++.+..+
T Consensus        77 ~~~~g~iD~lVnnAG~   92 (268)
T d2bgka1          77 IAKHGKLDIMFGNVGV   92 (268)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHcCCcceecccccc
Confidence              12578999976644