Citrus Sinensis ID: 021036
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 318 | 2.2.26 [Sep-21-2011] | |||||||
| P47025 | 714 | Mitochondrial division pr | yes | no | 0.518 | 0.231 | 0.255 | 8e-06 | |
| A6ZQL5 | 714 | Mitochondrial division pr | N/A | no | 0.518 | 0.231 | 0.255 | 1e-05 | |
| Q8YRI1 | 1526 | Uncharacterized WD repeat | yes | no | 0.443 | 0.092 | 0.286 | 2e-05 | |
| Q9BVA0 | 655 | Katanin p80 WD40 repeat-c | yes | no | 0.440 | 0.213 | 0.260 | 5e-05 | |
| Q8BG40 | 658 | Katanin p80 WD40 repeat-c | yes | no | 0.440 | 0.212 | 0.260 | 5e-05 | |
| Q5EBD9 | 824 | Elongator complex protein | yes | no | 0.477 | 0.184 | 0.278 | 0.0002 | |
| Q54D08 | 304 | Protein LST8 homolog OS=D | yes | no | 0.650 | 0.680 | 0.220 | 0.0004 |
| >sp|P47025|MDV1_YEAST Mitochondrial division protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MDV1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 81/200 (40%), Gaps = 35/200 (17%)
Query: 84 FSILAVGGRSGKVSLWRICVPK--CYSVEDCKVPTTAVL---IGLFQAHNSWITSISLAV 138
+ L GGR + LW + + + ++ PT + + F+AH +T++SL
Sbjct: 453 YGTLVTGGRDAALKLWNLNLAQQLYQETQNLTSPTNHIDSPCVHTFEAHTDEVTALSL-- 510
Query: 139 LSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLS 198
+P LV+GS D ++R WD L+ + S + T V +S S
Sbjct: 511 ------DPS-FLVSGSQDRTIRQWD-----LRSGKCLQTIDLSFANVLTTSTNVDLSK-S 557
Query: 199 LILPVQSPRLML---------LAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLA 249
+L ++ R + LA G G LW D+ K + + H +T L
Sbjct: 558 TLLTQRNERPSIGALQSFDAALATGTKDGVVRLW--DLRSGKV--IRTLKGHTDAITSLK 613
Query: 250 WAFDGCCLYSCSQDNFVRSW 269
FD CL + S D VR W
Sbjct: 614 --FDSACLVTGSYDRTVRIW 631
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Involved in mitochondrial fission. Has a partially redundant function to CAF4 in acting as an adapter protein, binding to FIS1 on the mitochondrial outer membrane and recruiting the dynamin-like GTPase DNM1 to form mitochondrial fission complexes. Formation of these complexes is required to promote constriction and fission of the mitochondrial compartment at a late step in mitochondrial division. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|A6ZQL5|MDV1_YEAS7 Mitochondrial division protein 1 OS=Saccharomyces cerevisiae (strain YJM789) GN=MDV1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 81/200 (40%), Gaps = 35/200 (17%)
Query: 84 FSILAVGGRSGKVSLWRICVPK--CYSVEDCKVPTTAVL---IGLFQAHNSWITSISLAV 138
+ L GGR + LW + + + ++ PT + + F+AH +T++SL
Sbjct: 453 YGTLVTGGRDAALKLWNLNLAQQLYQETQNLTSPTNHIDSPCVYTFEAHTDEVTALSL-- 510
Query: 139 LSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLS 198
+P LV+GS D ++R WD L+ + S + T V +S S
Sbjct: 511 ------DPS-FLVSGSQDRTIRQWD-----LRSGKCLQTIDLSFANVLTTSTNVDLSK-S 557
Query: 199 LILPVQSPRLML---------LAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLA 249
+L ++ R + LA G G LW D+ K + + H +T L
Sbjct: 558 TLLTQRNERPSIGALQSFDAALATGTKDGVVRLW--DLRSGKV--IRTLKGHTDAITSLK 613
Query: 250 WAFDGCCLYSCSQDNFVRSW 269
FD CL + S D VR W
Sbjct: 614 --FDSACLVTGSYDRTVRIW 631
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Involved in mitochondrial fission. Has a partially redundant function to CAF4 in acting as an adapter protein, binding to FIS1 on the mitochondrial outer membrane and recruiting the dynamin-like GTPase DNM1 to form mitochondrial fission complexes. Formation of these complexes is required to promote constriction and fission of the mitochondrial compartment at a late step in mitochondrial division. Saccharomyces cerevisiae (strain YJM789) (taxid: 307796) |
| >sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 77/185 (41%), Gaps = 44/185 (23%)
Query: 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSS 144
S LA G V LW I KC + FQ H SW+ S+ V + D S
Sbjct: 1213 STLASGSSDQTVRLWEINSSKC--------------LCTFQGHTSWVNSV---VFNPDGS 1255
Query: 145 NPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQ 204
+L +GSSD +VR+WD + + + H VN+V
Sbjct: 1256 ----MLASGSSDKTVRLWDISSSKCLHTFQGH---------TNWVNSVAF---------- 1292
Query: 205 SPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDN 264
+P +LA G G + LW +IS +K + ++ H V+ + ++ DG L S S D
Sbjct: 1293 NPDGSMLASGSGDQTVRLW--EISSSKC--LHTFQGHTSWVSSVTFSPDGTMLASGSDDQ 1348
Query: 265 FVRSW 269
VR W
Sbjct: 1349 TVRLW 1353
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q9BVA0|KTNB1_HUMAN Katanin p80 WD40 repeat-containing subunit B1 OS=Homo sapiens GN=KATNB1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 72/184 (39%), Gaps = 44/184 (23%)
Query: 86 ILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSN 145
+LA GG +V+LW I P C I H S + S+ L +
Sbjct: 35 LLATGGDDCRVNLWSINKPNC--------------IMSLTGHTSPVESVRL-------NT 73
Query: 146 PQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQS 205
P+ L+V GS GS+R+WD ++ ++ H ++ SL
Sbjct: 74 PEELIVAGSQSGSIRVWDLEAAKILRTLMGHKA----------------NICSLDF---H 114
Query: 206 PRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNF 265
P +A G + LW DI + V Y H Q V L ++ DG L S + D+
Sbjct: 115 PYGEFVASGSQDTNIKLW--DI--RRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHT 170
Query: 266 VRSW 269
V+ W
Sbjct: 171 VKLW 174
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Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Microtubule release from the mitotic spindle poles may allow depolymerization of the microtubule end proximal to the spindle pole, leading to poleward microtubule flux and poleward motion of chromosome. Microtubule release within the cell body of neurons may be required for their transport into neuronal processes by microtubule-dependent motor proteins. This transport is required for axonal growth. Homo sapiens (taxid: 9606) |
| >sp|Q8BG40|KTNB1_MOUSE Katanin p80 WD40 repeat-containing subunit B1 OS=Mus musculus GN=Katnb1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 72/184 (39%), Gaps = 44/184 (23%)
Query: 86 ILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSN 145
+LA GG +V+LW I P C I H S + S+ L +
Sbjct: 35 LLATGGDDCRVNLWSINKPNC--------------IMSLTGHTSPVESVRL-------NT 73
Query: 146 PQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQS 205
P+ L+V GS GS+R+WD ++ ++ H ++ SL
Sbjct: 74 PEELIVAGSQSGSIRVWDLEAAKILRTLMGHKA----------------NICSLDF---H 114
Query: 206 PRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNF 265
P +A G + LW DI + V Y H Q V L ++ DG L S + D+
Sbjct: 115 PYGEFVASGSQDTNIKLW--DI--RRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHT 170
Query: 266 VRSW 269
V+ W
Sbjct: 171 VKLW 174
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Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Microtubule release from the mitotic spindle poles may allow depolymerization of the microtubule end proximal to the spindle pole, leading to poleward microtubule flux and poleward motion of chromosome. Microtubule release within the cell body of neurons may be required for their transport into neuronal processes by microtubule-dependent motor proteins. This transport is required for axonal growth. Mus musculus (taxid: 10090) |
| >sp|Q5EBD9|ELP2_XENTR Elongator complex protein 2 OS=Xenopus tropicalis GN=elp2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 84/187 (44%), Gaps = 35/187 (18%)
Query: 87 LAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNP 146
L GG KV +W I KC + P A + H + ++ AV + S N
Sbjct: 76 LVSGGSDKKVIIWAIEKNKC------EQPVAA------EGHTEVVNAVH-AVYTQRSEN- 121
Query: 147 QVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVP-FSLLKEVVTVNTVPISVL-SLILPVQ 204
++L+V+ +SD +VR+W L+++ + C+ S K V V IS L ++PV
Sbjct: 122 ELLIVSAASDCTVRLW------LRRNVKTECLQTLSFGKGFVL--DVCISFLPGSLVPV- 172
Query: 205 SPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLY--SCSQ 262
LA G L+ + +F+K + H+ + G+ WA G L+ SC+Q
Sbjct: 173 ------LACGADDSRIHLYV--LQNEQFEKTQVLHGHEDWIRGVEWAVTGQNLFLASCAQ 224
Query: 263 DNFVRSW 269
D +R W
Sbjct: 225 DCLIRIW 231
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Acts as subunit of the RNA polymerase II elongator complex, which is a histone acetyltransferase component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. Xenopus tropicalis (taxid: 8364) |
| >sp|Q54D08|LST8_DICDI Protein LST8 homolog OS=Dictyostelium discoideum GN=lst8 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 90/263 (34%), Gaps = 56/263 (21%)
Query: 63 SPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIG 122
SP + K V G + G G V +W + P C +C P V++
Sbjct: 67 SPAMSFDGHKGNVTGVGFQKEGKWMYTGSEDGTVKIWDLKAPGCQRDYECSAPVNTVVLH 126
Query: 123 LFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWD----GYIQELQKSAEAHCV 178
QA L++G +GS+R+WD +EL E
Sbjct: 127 PNQAE----------------------LISGDQNGSIRVWDLISNTCSRELVPDGEVGIT 164
Query: 179 PFSLLKE---VVTVNT--------VPISVLSLILPVQ--------------SPRLMLLAV 213
++ + VV NT + S P+Q SP LLA
Sbjct: 165 SLTISSDGGLVVASNTKGKCFVWRLGEDDTSRFEPLQKIEAHNAPILKTLFSPDTKLLAT 224
Query: 214 GKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFH- 272
+ +W + KF+ V + N H + V A++ D L + S D+ R W H
Sbjct: 225 CSADHTVKIW----NTKKFNVVQTLNGHQRWVWDCAFSNDSAYLVTGSSDHLSRLWDLHQ 280
Query: 273 GNSLSQVSIPTNTPGLQSCTDLP 295
G+++ S + DLP
Sbjct: 281 GDAVKTYSGHIKAVNAVALNDLP 303
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Plays a role in regulation of adenylate cyclase and protein kinase B (PKB) activation during aggregation. Involved in both chemotaxis and signal relay. Dictyostelium discoideum (taxid: 44689) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 318 | ||||||
| 224118382 | 894 | predicted protein [Populus trichocarpa] | 0.987 | 0.351 | 0.612 | 1e-105 | |
| 359490829 | 864 | PREDICTED: uncharacterized protein LOC10 | 0.915 | 0.336 | 0.619 | 6e-99 | |
| 255566862 | 847 | nucleotide binding protein, putative [Ri | 0.880 | 0.330 | 0.614 | 2e-91 | |
| 356537363 | 839 | PREDICTED: uncharacterized protein LOC10 | 0.852 | 0.323 | 0.597 | 2e-85 | |
| 302143973 | 800 | unnamed protein product [Vitis vinifera] | 0.795 | 0.316 | 0.618 | 1e-84 | |
| 356554660 | 879 | PREDICTED: uncharacterized protein LOC10 | 0.852 | 0.308 | 0.594 | 3e-84 | |
| 147788228 | 829 | hypothetical protein VITISV_015932 [Viti | 0.858 | 0.329 | 0.558 | 9e-84 | |
| 357491809 | 470 | hypothetical protein MTR_5g077160 [Medic | 0.880 | 0.595 | 0.533 | 8e-79 | |
| 357440177 | 857 | hypothetical protein MTR_1g059090 [Medic | 0.889 | 0.330 | 0.534 | 1e-78 | |
| 14517468 | 793 | AT3g49400/F2K15_260 [Arabidopsis thalian | 0.861 | 0.345 | 0.530 | 9e-78 |
| >gi|224118382|ref|XP_002317805.1| predicted protein [Populus trichocarpa] gi|222858478|gb|EEE96025.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust.
Identities = 202/330 (61%), Positives = 248/330 (75%), Gaps = 16/330 (4%)
Query: 3 RIVDFTSNKMKDSNTHP-----------TVAAS----KSKGNSITKIPSNCCLPLITADQ 47
R V+ + +KDS T T+A S K TK+ NC LPLITA++
Sbjct: 191 RKVNVPTYNIKDSETFQDQLSNPINRGRTIAGSDHENKIDRRRTTKVLGNCTLPLITAEK 250
Query: 48 YASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCY 107
YASR AML SL +AWSPVL L SK P+N SSN FSILAVGG+SGK+S+WRI VP+ Y
Sbjct: 251 YASRCAMLSSLVIAWSPVLWLPSKICSAPENDSSNGFSILAVGGKSGKISVWRINVPQYY 310
Query: 108 SVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQ 167
S+E +VPTT +GL QAHNSW+T+ISLA+L S SNPQVLL +GSSDGSVRIW G +
Sbjct: 311 SIEHGRVPTTVTFVGLLQAHNSWVTTISLALLGS-KSNPQVLLASGSSDGSVRIWIGKGE 369
Query: 168 ELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDI 227
EL +++ A+ PFSLLKEVV+VN VPISVLSL +PVQ+ MLLAVGKGSGSF++W DI
Sbjct: 370 ELLETSGANNAPFSLLKEVVSVNCVPISVLSLAVPVQTMHKMLLAVGKGSGSFEVWTADI 429
Query: 228 SCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPG 287
S +KFDKV Y+AHD VVTGLAWAFDGCCLYSC Q+N+VR+W+ HG++L +VSIP+NTPG
Sbjct: 430 SSSKFDKVCLYDAHDCVVTGLAWAFDGCCLYSCGQENYVRAWVLHGSALCEVSIPSNTPG 489
Query: 288 LQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317
L+S DLP+ FVSCLG+A SPGN+ +AMV+
Sbjct: 490 LRSSNDLPNVFVSCLGVAASPGNIALAMVR 519
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359490829|ref|XP_003634172.1| PREDICTED: uncharacterized protein LOC100853102 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 366 bits (940), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 181/292 (61%), Positives = 228/292 (78%), Gaps = 1/292 (0%)
Query: 27 KGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSI 86
K S+ KI +C LPL+T +QYASR+AML SL VAWSPVL L + P + SSN FS+
Sbjct: 195 KTRSLKKIGEDCTLPLVTVNQYASRNAMLSSLVVAWSPVLCLPPETDSAPPDNSSNCFSL 254
Query: 87 LAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNP 146
LAVGG+SGK+S WR+ P Y+VE +VP + +L G QAHN+W+T+IS A+L+SD+S+P
Sbjct: 255 LAVGGKSGKISFWRVHEPLSYTVEHSRVPISVMLAGFHQAHNTWVTAISWALLTSDASSP 314
Query: 147 QVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSP 206
QVLL TGS+DGSV+IW Y ++L KS+E + PFSLLKEV+ ++VP+SVL+LI+PVQSP
Sbjct: 315 QVLLATGSTDGSVKIWLEYSEKLLKSSEVNDPPFSLLKEVINADSVPVSVLTLIVPVQSP 374
Query: 207 RLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFV 266
+ M LAVGKG GSF++W CD+S KFD++GSYNAHD VVTGLAWAFDGCCLYSCSQDN V
Sbjct: 375 QKMFLAVGKGCGSFEVWICDLSIRKFDRIGSYNAHDHVVTGLAWAFDGCCLYSCSQDNSV 434
Query: 267 RSWIFHGNSLSQVSIPTNTPGLQS-CTDLPDAFVSCLGMAVSPGNLVVAMVQ 317
RSW GNSL +V IP NTPG+++ DLP F SC G+AVSPGNLVVA+ +
Sbjct: 435 RSWSLCGNSLDEVPIPPNTPGVKNPADDLPYLFGSCYGVAVSPGNLVVAVAR 486
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255566862|ref|XP_002524414.1| nucleotide binding protein, putative [Ricinus communis] gi|223536298|gb|EEF37949.1| nucleotide binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 341 bits (875), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 174/283 (61%), Positives = 218/283 (77%), Gaps = 3/283 (1%)
Query: 35 PSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSG 94
P +C LP ITADQYASRSAML S+ VAWSP+L LSSK V QN S FS++AVGG+SG
Sbjct: 266 PESCSLPQITADQYASRSAMLSSVVVAWSPLLCLSSKISLVSQNDSPRRFSLIAVGGKSG 325
Query: 95 KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS 154
+SLWRI P+ YS+E +PT+ +L+GL QAHNSW+T+++ A L S++ NPQVLL +G
Sbjct: 326 NISLWRIDAPQSYSIEHGWLPTSVMLVGLLQAHNSWVTAVNFAFLGSNT-NPQVLLASGC 384
Query: 155 SDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVG 214
SDGSV+IW G + L S+E++ PF LLKEV+ + VP+SVLS+ +PVQ+ MLLAVG
Sbjct: 385 SDGSVKIWLGSGEILLDSSESNKTPFFLLKEVIPSDFVPVSVLSIKIPVQAVEKMLLAVG 444
Query: 215 KGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGN 274
KGSGSFD+W CDIS +F K GS +AHD VVTGLAWAF+G CLYSC QDN+V W+ GN
Sbjct: 445 KGSGSFDVWTCDISGCEFSKCGSNDAHDYVVTGLAWAFEG-CLYSCGQDNYVHCWLLRGN 503
Query: 275 SLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317
+L +V P+NTP L S TDLPD F+SCLG+A+SPGNLVVAMV+
Sbjct: 504 ALCEVPFPSNTPSL-SLTDLPDVFLSCLGLAISPGNLVVAMVR 545
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356537363|ref|XP_003537197.1| PREDICTED: uncharacterized protein LOC100816957 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 322 bits (824), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 165/276 (59%), Positives = 205/276 (74%), Gaps = 5/276 (1%)
Query: 42 LITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRI 101
L++ADQYASRSAML SL V+WSP+LRL+S+ YPV + S+LAVGG+SGK+SLWR
Sbjct: 193 LLSADQYASRSAMLCSLVVSWSPLLRLASELYPVCDS-----VSLLAVGGKSGKISLWRF 247
Query: 102 CVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRI 161
P+CY++ED +VPTT +GL QAHNSW+T+IS + + DSSNPQ+LL +GSSDGSV+I
Sbjct: 248 HPPECYTIEDREVPTTVKFVGLLQAHNSWVTTISWLLFAFDSSNPQILLASGSSDGSVKI 307
Query: 162 WDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFD 221
W +L KS++ FSLLKEV+TVN VP+SVLS+ VQ P MLLA GK SGSF+
Sbjct: 308 WLADNDKLLKSSKVDQTSFSLLKEVITVNAVPVSVLSVTTHVQYPSKMLLATGKVSGSFE 367
Query: 222 LWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSI 281
+W CDIS +FDK+GSYNAHD VVTGL WAF G LYSCSQDN VRSWI H N L +V++
Sbjct: 368 IWLCDISSREFDKLGSYNAHDLVVTGLTWAFGGRFLYSCSQDNLVRSWILHENRLDEVTL 427
Query: 282 PTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317
++ P S +AF SC G+AVSPGNLV+A V
Sbjct: 428 VSDMPRDSSICISREAFDSCFGVAVSPGNLVIATVH 463
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302143973|emb|CBI23078.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 319 bits (817), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 157/254 (61%), Positives = 199/254 (78%), Gaps = 1/254 (0%)
Query: 65 VLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLF 124
VL L + P + SSN FS+LAVGG+SGK+S WR+ P Y+VE +VP + +L G
Sbjct: 169 VLCLPPETDSAPPDNSSNCFSLLAVGGKSGKISFWRVHEPLSYTVEHSRVPISVMLAGFH 228
Query: 125 QAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLK 184
QAHN+W+T+IS A+L+SD+S+PQVLL TGS+DGSV+IW Y ++L KS+E + PFSLLK
Sbjct: 229 QAHNTWVTAISWALLTSDASSPQVLLATGSTDGSVKIWLEYSEKLLKSSEVNDPPFSLLK 288
Query: 185 EVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQV 244
EV+ ++VP+SVL+LI+PVQSP+ M LAVGKG GSF++W CD+S KFD++GSYNAHD V
Sbjct: 289 EVINADSVPVSVLTLIVPVQSPQKMFLAVGKGCGSFEVWICDLSIRKFDRIGSYNAHDHV 348
Query: 245 VTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQS-CTDLPDAFVSCLG 303
VTGLAWAFDGCCLYSCSQDN VRSW GNSL +V IP NTPG+++ DLP F SC G
Sbjct: 349 VTGLAWAFDGCCLYSCSQDNSVRSWSLCGNSLDEVPIPPNTPGVKNPADDLPYLFGSCYG 408
Query: 304 MAVSPGNLVVAMVQ 317
+AVSPGNLVVA+ +
Sbjct: 409 VAVSPGNLVVAVAR 422
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356554660|ref|XP_003545662.1| PREDICTED: uncharacterized protein LOC100804583 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 317 bits (813), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 164/276 (59%), Positives = 203/276 (73%), Gaps = 5/276 (1%)
Query: 42 LITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRI 101
L++ADQYASRSAML SL V+WSP+LRL+S+ YPV + S+LAVGG+SGK+SLWR
Sbjct: 232 LLSADQYASRSAMLCSLVVSWSPLLRLASELYPVCDS-----VSLLAVGGKSGKISLWRF 286
Query: 102 CVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRI 161
CY++ED +VPTT +GL QAHNSW+T+IS + + DSSNPQ+LL +GSSDGSV+I
Sbjct: 287 HPTDCYTIEDREVPTTVKFVGLLQAHNSWVTTISWLLFAFDSSNPQILLASGSSDGSVKI 346
Query: 162 WDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFD 221
W +L KS++ FSLLKEV+TVN VP+SVLS+ VQ P MLLA GK SGSF+
Sbjct: 347 WLADNDKLLKSSKVDQTSFSLLKEVITVNAVPVSVLSVTTHVQYPSKMLLATGKVSGSFE 406
Query: 222 LWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSI 281
+W CDIS +FDK+GSYNAHD VVTGL WAF G LYSCSQDN VRSWI H N L +V++
Sbjct: 407 IWLCDISSGEFDKLGSYNAHDLVVTGLTWAFGGRFLYSCSQDNLVRSWILHENRLDEVTL 466
Query: 282 PTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317
++ P S +AF SC G+AVSPGNLV+A V
Sbjct: 467 VSDMPHDSSICISREAFDSCFGVAVSPGNLVIATVH 502
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147788228|emb|CAN71593.1| hypothetical protein VITISV_015932 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 316 bits (809), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 163/292 (55%), Positives = 210/292 (71%), Gaps = 19/292 (6%)
Query: 27 KGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSI 86
K S+ KI +C LPL+T +QYASR+AML SL VAWSPVL L + P + SSN FS+
Sbjct: 195 KTRSLKKIGEDCTLPLVTVNQYASRNAMLSSLVVAWSPVLCLPPETDSAPPDNSSNCFSL 254
Query: 87 LAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNP 146
LAVGG+SGK+S WR+ P Y+VE +VP + +L G QAHN+W+T+IS A+L+SD+S+P
Sbjct: 255 LAVGGKSGKISFWRVHEPLSYTVEHSRVPISVMLAGFHQAHNTWVTAISWALLTSDASSP 314
Query: 147 QVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSP 206
QVLL TGS+DGSV+IW Y ++L KS+E + PFSLLKEV+ ++VP+SVL+LI+PVQSP
Sbjct: 315 QVLLATGSTDGSVKIWLEYSEKLLKSSEVNDPPFSLLKEVINADSVPVSVLTLIVPVQSP 374
Query: 207 RLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFV 266
+ M LAVGKG GSF++W CD+S KFD++GSYNAHD V DN V
Sbjct: 375 QKMFLAVGKGCGSFEVWICDLSIRKFDRIGSYNAHDHV------------------DNSV 416
Query: 267 RSWIFHGNSLSQVSIPTNTPGLQS-CTDLPDAFVSCLGMAVSPGNLVVAMVQ 317
RSW GNSL +V IP NTPG+++ DLP F SC G+AVSPGNLVVA+ +
Sbjct: 417 RSWSLCGNSLDEVPIPPNTPGVKNPADDLPYLFGSCYGVAVSPGNLVVAVAR 468
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357491809|ref|XP_003616192.1| hypothetical protein MTR_5g077160 [Medicago truncatula] gi|355517527|gb|AES99150.1| hypothetical protein MTR_5g077160 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 300 bits (767), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 151/283 (53%), Positives = 199/283 (70%), Gaps = 3/283 (1%)
Query: 33 KIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGR 92
K+P N PLI+AD+YASRSAML+SL V+WSP+LR++S+ YP P +S S+LAVG +
Sbjct: 188 KLPENQFSPLISADEYASRSAMLYSLVVSWSPLLRVASEFYPDPNTCAS--VSLLAVGAK 245
Query: 93 SGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVT 152
SGK+S WR P CY++E+ + PT +G +AHNSWIT++S + + +SSNP ++L T
Sbjct: 246 SGKISFWRFHQPDCYTIEERRAPTAVKFVGFLRAHNSWITTMSWLLFAYESSNPLIILAT 305
Query: 153 GSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLA 212
GSSDGSV++W G +L KS+E F LLKEV+TVN VP+SVLS+ + VQ P MLLA
Sbjct: 306 GSSDGSVKVWLGDTDKLLKSSEVDQTSFLLLKEVITVNAVPVSVLSVTVHVQYPSKMLLA 365
Query: 213 VGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFH 272
+GK SGS ++W CDIS +FDK+GSY+AH VTGL WAF G L SCSQDN +R WI H
Sbjct: 366 IGKVSGSIEIWICDISSREFDKLGSYDAHYYGVTGLTWAFGGRFLCSCSQDNLLRGWILH 425
Query: 273 GNSLSQVSIPTNTPGLQSCT-DLPDAFVSCLGMAVSPGNLVVA 314
L +++I + P T DAF SC G+AVSPGNL++A
Sbjct: 426 ERCLEEITILSEMPRSNDSTCPSRDAFDSCFGVAVSPGNLIIA 468
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357440177|ref|XP_003590366.1| hypothetical protein MTR_1g059090 [Medicago truncatula] gi|355479414|gb|AES60617.1| hypothetical protein MTR_1g059090 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 156/292 (53%), Positives = 201/292 (68%), Gaps = 9/292 (3%)
Query: 33 KIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGR 92
K+P + L LI+AD+YASRSAML+SL V+WSP+L ++S+ YP P +S S+LAVGG+
Sbjct: 191 KMPESQLLSLISADEYASRSAMLYSLVVSWSPLLHVASEFYPDPNRNAS--VSLLAVGGK 248
Query: 93 SGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVT 152
SGK+SLWR P C+++ED KVP IGL AHNSWIT++S + + DS NPQ++LVT
Sbjct: 249 SGKISLWRFHQPDCFTIEDRKVPAVVKFIGLLHAHNSWITTMSWLLFAFDSLNPQIILVT 308
Query: 153 GSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLA 212
GSSDGSV++W G +L KS+E F LLKEV+T N VP+SVLS+ + VQ P MLLA
Sbjct: 309 GSSDGSVKVWLGDNDKLLKSSEVDPNSFLLLKEVITANAVPVSVLSVTVHVQYPSKMLLA 368
Query: 213 VGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFH 272
+GK SGS ++W CDIS +FDK+GSY+AH VT L WAFDG L SCSQDN +R WI H
Sbjct: 369 IGKVSGSIEIWLCDISSREFDKLGSYDAHYYAVTSLTWAFDGRFLCSCSQDNILRGWILH 428
Query: 273 GNSLSQVSIPTNTPGLQSCTDL-------PDAFVSCLGMAVSPGNLVVAMVQ 317
L ++ I ++ P T + D F SC G+AVSPGNLV+A V
Sbjct: 429 ERLLDEIPIFSDMPRSNDSTCVWSYHPPSRDTFESCFGVAVSPGNLVIATVH 480
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|14517468|gb|AAK62624.1| AT3g49400/F2K15_260 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 296 bits (758), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 148/279 (53%), Positives = 196/279 (70%), Gaps = 5/279 (1%)
Query: 39 CLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSL 98
C I+ Y SR A+L S +VAWS +LR SS+ G+ FS+LA+G +SG VS+
Sbjct: 238 CSQEISPQTYVSREALLSSHSVAWSSLLRFSSES----SCGNMLRFSLLAIGSKSGSVSI 293
Query: 99 WRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGS 158
W++ P+CY +E V L + Q H+SW++++S + DSSNPQV+LVTGS DGS
Sbjct: 294 WKVHAPECYHIERSNVSPMVELTAIVQTHSSWVSTMSWGIFGCDSSNPQVVLVTGSCDGS 353
Query: 159 VRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSG 218
V+IW ++LQ S E + F LLKEVV VN V +S LS ++ M LA+GKGSG
Sbjct: 354 VKIWMSNKEDLQNSVEVYKSSFFLLKEVVAVNPVQVSTLSFVVS-NHYNAMHLAIGKGSG 412
Query: 219 SFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQ 278
SF++WKC+IS KF+++ S NAH+QVVTGLAW++DG CLYSCSQDN+VRSWI N++S+
Sbjct: 413 SFEVWKCEISTRKFEQIVSTNAHNQVVTGLAWSYDGRCLYSCSQDNYVRSWILCENAISE 472
Query: 279 VSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317
V IP NTPGL S TDLPD F+SCLG+A+SPGNL VA+V+
Sbjct: 473 VPIPANTPGLSSTTDLPDDFLSCLGVALSPGNLAVALVR 511
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 318 | ||||||
| TAIR|locus:2082976 | 892 | AT3G49400 "AT3G49400" [Arabido | 0.902 | 0.321 | 0.5 | 9.6e-73 |
| TAIR|locus:2082976 AT3G49400 "AT3G49400" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 735 (263.8 bits), Expect = 9.6e-73, P = 9.6e-73
Identities = 147/294 (50%), Positives = 193/294 (65%)
Query: 26 SKGNSITKIPSNC--CLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNW 83
S G +P C I+ Y SR A+L S +VAWS +LR SS+ G+
Sbjct: 223 SNGQDRRSLPKALKKCSQEISPQTYVSREALLSSHSVAWSSLLRFSSES----SCGNMLR 278
Query: 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITXXXXXXXXXXX 143
FS+LA+G +SG VS+W++ P+CY +E V L + Q H+SW++
Sbjct: 279 FSLLAIGSKSGSVSIWKVHAPECYHIERSNVSPMVELTAIVQTHSSWVSTMSWGIFGCDS 338
Query: 144 XNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPV 203
NPQV+LVTGS DGSV+IW ++LQ S E + F LLKEVV VN V +S LS ++
Sbjct: 339 SNPQVVLVTGSCDGSVKIWMSNKEDLQNSVEVYKSSFFLLKEVVAVNPVQVSTLSFVVS- 397
Query: 204 QSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQD 263
M LA+GKGSGSF++WKC+IS KF+++ S NAH+QVVTGLAW++DG CLYSCSQD
Sbjct: 398 NHYNAMHLAIGKGSGSFEVWKCEISTRKFEQIVSTNAHNQVVTGLAWSYDGRCLYSCSQD 457
Query: 264 NFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317
N+VRSWI N++S+V IP NTPGL S TDLPD F+SCLG+A+SPGNL VA+V+
Sbjct: 458 NYVRSWILCENAISEVPIPANTPGLSSTTDLPDDFLSCLGVALSPGNLAVALVR 511
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.132 0.417 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 318 306 0.00099 115 3 11 22 0.38 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1
No. of states in DFA: 621 (66 KB)
Total size of DFA: 245 KB (2130 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 22.95u 0.09s 23.04t Elapsed: 00:00:01
Total cpu time: 22.95u 0.09s 23.04t Elapsed: 00:00:01
Start: Fri May 10 22:15:13 2013 End: Fri May 10 22:15:14 2013
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 318 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-11 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-06 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-05 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 2e-04 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 3e-04 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 0.001 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 0.001 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 0.001 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 1e-11
Identities = 44/184 (23%), Positives = 69/184 (37%), Gaps = 44/184 (23%)
Query: 86 ILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSN 145
+A + G + LW + T + H + S++ S D
Sbjct: 149 FVASSSQDGTIKLWDL--------------RTGKCVATLTGHTGEVNSVAF---SPDGEK 191
Query: 146 PQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQS 205
L++ SSDG++++WD + + H VN+V S
Sbjct: 192 ----LLSSSSDGTIKLWDLSTGKCLGTLRGHENG---------VNSV----------AFS 228
Query: 206 PRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNF 265
P LLA G G+ +W D+ + V + + H VT LAW+ DG L S S D
Sbjct: 229 PDGYLLASGSEDGTIRVW--DL--RTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGT 284
Query: 266 VRSW 269
+R W
Sbjct: 285 IRIW 288
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 2e-06
Identities = 47/199 (23%), Positives = 72/199 (36%), Gaps = 52/199 (26%)
Query: 120 LIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVP 179
L + H +T ++ S LL TGS DG++++WD EL ++ + H
Sbjct: 1 LRRTLKGHTGGVTCVAF----SPDGK---LLATGSGDGTIKVWDLETGELLRTLKGH--- 50
Query: 180 FSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFD----LWKCDISCNKFDKV 235
V V LA SGS D LW D+ + V
Sbjct: 51 ---TGPVRDVAASADG-------------TYLA----SGSSDKTIRLW--DL--ETGECV 86
Query: 236 GSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLP 295
+ H V+ +A++ DG L S S+D ++ W L+ TD
Sbjct: 87 RTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTT--------LRGHTD-- 136
Query: 296 DAFVSCLGMAVSPGNLVVA 314
+V+ + A SP VA
Sbjct: 137 --WVNSV--AFSPDGTFVA 151
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.1 bits (105), Expect = 3e-05
Identities = 52/222 (23%), Positives = 80/222 (36%), Gaps = 42/222 (18%)
Query: 63 SPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIG 122
S + LS V S +LA G G V LW + K S
Sbjct: 275 SLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT----------- 323
Query: 123 LFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSL 182
+ H ++S+S S + +L+ GS DG++R+WD + K+ E H
Sbjct: 324 -LKGHEGPVSSLSF------SPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH------ 370
Query: 183 LKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHD 242
V +V S P +++ G G+ LW + + + + H
Sbjct: 371 ----SNVLSVSFS----------PDGRVVSSGSTDGTVRLWDL----STGSLLRNLDGHT 412
Query: 243 QVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTN 284
VT L ++ DG L S S DN +R W + S P
Sbjct: 413 SRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPDG 454
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 38/185 (20%), Positives = 70/185 (37%), Gaps = 44/185 (23%)
Query: 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSS 144
+LA G G + +W +E ++ T + H + ++ S+D +
Sbjct: 22 KLLATGSGDGTIKVW--------DLETGELLRT------LKGHTGPVRDVAA---SADGT 64
Query: 145 NPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQ 204
L +GSSD ++R+WD + V T+ V S+
Sbjct: 65 ----YLASGSSDKTIRLWD----------------LETGECVRTLTGHTSYVSSVAF--- 101
Query: 205 SPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDN 264
SP +L+ + +W D+ K + + H V +A++ DG + S SQD
Sbjct: 102 SPDGRILSSSSRDKTIKVW--DVETGKC--LTTLRGHTDWVNSVAFSPDGTFVASSSQDG 157
Query: 265 FVRSW 269
++ W
Sbjct: 158 TIKLW 162
|
Length = 289 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 2e-04
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 7/45 (15%)
Query: 119 VLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWD 163
L+ + H +TS++ S D + LL +GS DG+VR+WD
Sbjct: 2 KLLRTLKGHTGPVTSVAF---SPDGN----LLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 3e-04
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
Query: 117 TAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWD 163
+ L+ + H +TS++ S D L +GS DG++++WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAF---SPDGK----YLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.1 bits (92), Expect = 0.001
Identities = 46/190 (24%), Positives = 74/190 (38%), Gaps = 42/190 (22%)
Query: 80 SSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVL 139
S + + + G + LW + K S H ++S++
Sbjct: 164 SPDGKLLASGSSLDGTIKLWDLRTGKPLST--------------LAGHTDPVSSLAF--- 206
Query: 140 SSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSL 199
S + +L+ +GSSDG++R+WD +L +S T++ SV+S
Sbjct: 207 ---SPDGGLLIASGSSDGTIRLWDLSTGKLLRS---------------TLSGHSDSVVSS 248
Query: 200 ILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYS 259
SP LLA G G+ LW S + + + H V +A++ DG L S
Sbjct: 249 F----SPDGSLLASGSSDGTIRLWDLRSSSSLLR---TLSGHSSSVLSVAFSPDGKLLAS 301
Query: 260 CSQDNFVRSW 269
S D VR W
Sbjct: 302 GSSDGTVRLW 311
|
Length = 466 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 35.8 bits (83), Expect = 0.001
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 232 FDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSW 269
+ + H VT +A++ DG L S S D VR W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 35.8 bits (83), Expect = 0.001
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 231 KFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSW 269
+ + + H VT +A++ DG L S S D ++ W
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 318 | |||
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.98 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.98 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.97 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.97 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.97 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.97 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.97 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.96 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.96 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.96 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.96 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.96 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.96 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.96 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.96 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.96 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.96 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.96 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.96 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.95 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.95 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.95 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.95 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.95 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.95 | |
| PTZ00421 | 493 | coronin; Provisional | 99.95 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.95 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.95 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.95 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| PTZ00421 | 493 | coronin; Provisional | 99.95 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.95 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.95 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.95 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.95 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.94 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.94 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.94 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.94 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.94 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.94 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.94 | |
| PTZ00420 | 568 | coronin; Provisional | 99.94 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.94 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.94 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| PTZ00420 | 568 | coronin; Provisional | 99.94 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.93 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.93 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.93 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.93 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.93 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.93 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.93 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.93 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.92 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.92 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.92 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.92 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.92 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.92 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.91 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.91 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.91 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.91 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.91 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.91 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.91 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.91 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.91 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.91 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.9 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.9 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.9 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.9 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.9 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.89 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.89 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.89 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.89 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.88 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.88 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.88 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.88 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.87 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.86 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.86 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.85 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.85 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.85 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.84 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.84 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.84 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.83 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.83 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.83 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.83 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.83 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.83 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.82 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.82 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.82 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.82 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.81 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.81 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.81 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.8 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.8 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.8 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.8 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.79 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.79 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.79 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.78 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.78 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.78 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.78 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.78 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.77 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.77 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.77 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.77 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.76 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.76 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.76 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.76 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.75 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.74 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.74 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.73 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.72 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.71 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.69 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.69 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.69 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.68 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.68 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.67 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.67 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.66 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.66 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.66 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.65 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.65 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.64 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.64 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.64 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.63 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.63 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.63 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.62 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.62 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.62 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.61 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.61 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.61 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.6 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.6 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.6 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.59 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.59 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.56 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.56 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.55 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.53 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.53 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.53 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.52 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.51 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.51 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.5 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.5 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.49 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.49 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.47 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.47 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.46 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.46 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.46 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.46 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.45 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.44 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.43 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.43 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.43 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.39 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.39 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.38 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.37 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.37 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.33 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.33 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.31 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.31 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.3 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.29 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.28 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.28 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.27 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.26 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.23 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.23 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.2 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 99.2 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.19 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.19 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.18 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.18 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 99.18 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.16 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.14 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.13 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.12 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.1 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.1 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.09 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.08 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.08 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.04 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.0 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.0 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 98.98 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.97 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.96 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.95 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.93 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.93 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.93 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.91 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.91 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.89 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.88 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.87 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.86 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.83 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.79 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.79 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.79 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.73 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.73 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.71 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.71 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.7 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.69 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.67 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.67 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.67 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.65 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.64 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.64 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.61 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.6 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.59 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.58 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.58 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.55 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.55 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.52 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.51 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.47 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.41 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.38 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.38 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.38 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.34 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.31 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.29 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.29 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.19 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.13 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.06 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.03 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.03 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.02 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.98 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.96 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.91 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.91 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.88 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.85 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.82 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.81 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.8 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.77 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.77 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 97.76 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.76 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.74 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.72 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.72 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 97.72 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.72 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.71 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.7 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.67 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.67 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.65 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.65 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.64 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.63 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.55 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.49 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.45 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 97.44 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.42 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.41 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.34 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.23 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.13 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.1 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.09 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.08 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.03 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.02 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.99 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.93 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.79 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 96.78 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 96.76 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.75 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.69 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.69 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.49 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.49 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 96.49 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 96.45 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 96.42 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 96.35 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.31 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 96.17 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.14 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.13 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 96.09 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 96.07 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 96.06 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 95.92 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 95.92 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 95.92 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 95.88 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 95.82 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 95.75 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 95.7 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 95.67 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 95.53 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 95.44 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 95.42 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 95.4 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 95.33 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 95.26 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 95.18 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 95.15 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 95.1 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 95.09 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 95.03 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 95.01 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.98 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 94.85 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 94.82 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.53 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 94.47 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 94.47 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 94.2 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 94.02 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 93.97 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 93.92 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 93.89 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 93.88 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 93.87 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 93.87 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 93.73 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 93.17 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 93.07 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 93.0 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 92.39 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 92.33 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 92.33 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 92.15 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 91.89 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 91.68 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 91.39 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 91.33 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 91.21 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 91.19 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 91.1 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 91.1 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 90.9 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 90.75 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 90.35 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 90.28 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 89.62 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 89.57 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 89.1 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 88.95 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 88.94 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 88.9 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 88.82 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 88.8 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 88.34 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 88.33 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 88.21 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 88.1 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 87.62 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 87.39 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 86.91 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 86.68 | |
| PF14269 | 299 | Arylsulfotran_2: Arylsulfotransferase (ASST) | 86.58 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 86.38 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 85.97 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 85.77 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 85.77 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 85.68 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 85.31 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 85.28 | |
| PF14779 | 257 | BBS1: Ciliary BBSome complex subunit 1 | 82.62 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 82.51 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 81.55 | |
| PLN02193 | 470 | nitrile-specifier protein | 81.54 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 81.5 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 81.29 | |
| smart00564 | 33 | PQQ beta-propeller repeat. Beta-propeller repeat o | 80.65 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 80.5 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 80.21 |
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-43 Score=278.12 Aligned_cols=244 Identities=25% Similarity=0.352 Sum_probs=211.0
Q ss_pred CcCCCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEE
Q 021036 10 NKMKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAV 89 (318)
Q Consensus 10 ~~~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~ 89 (318)
..|.+ ....+++||.|.++|+||+.+.....+.. . |+.. ++|++|+|++ +.||+
T Consensus 121 ~~fsp-~g~~l~tGsGD~TvR~WD~~TeTp~~t~K--g--H~~W---VlcvawsPDg------------------k~iAS 174 (480)
T KOG0271|consen 121 VQFSP-TGSRLVTGSGDTTVRLWDLDTETPLFTCK--G--HKNW---VLCVAWSPDG------------------KKIAS 174 (480)
T ss_pred EEecC-CCceEEecCCCceEEeeccCCCCcceeec--C--CccE---EEEEEECCCc------------------chhhc
Confidence 34454 56779999999999999998876544433 2 6776 6669999999 99999
Q ss_pred ecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcce
Q 021036 90 GGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQEL 169 (318)
Q Consensus 90 g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 169 (318)
|+.||+|++||.+++++ .-+.+.+|...|++++|.|.+. .+..++|++++.||.++|||+..+++
T Consensus 175 G~~dg~I~lwdpktg~~-------------~g~~l~gH~K~It~Lawep~hl--~p~~r~las~skDg~vrIWd~~~~~~ 239 (480)
T KOG0271|consen 175 GSKDGSIRLWDPKTGQQ-------------IGRALRGHKKWITALAWEPLHL--VPPCRRLASSSKDGSVRIWDTKLGTC 239 (480)
T ss_pred cccCCeEEEecCCCCCc-------------ccccccCcccceeEEeeccccc--CCCccceecccCCCCEEEEEccCceE
Confidence 99999999999998863 4578899999999999999987 45667999999999999999999888
Q ss_pred eeeecccccccccce-----------------------------------------------------------------
Q 021036 170 QKSAEAHCVPFSLLK----------------------------------------------------------------- 184 (318)
Q Consensus 170 ~~~~~~~~~~~~~~~----------------------------------------------------------------- 184 (318)
+..+.+|..++++++
T Consensus 240 ~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se 319 (480)
T KOG0271|consen 240 VRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSE 319 (480)
T ss_pred EEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHH
Confidence 888888877776654
Q ss_pred -----------------------------------------eeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEe
Q 021036 185 -----------------------------------------EVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLW 223 (318)
Q Consensus 185 -----------------------------------------~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw 223 (318)
.-..+|..-|+.+.|+ ||++++|+++.|..|++|
T Consensus 320 ~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fS-----Pd~r~IASaSFDkSVkLW 394 (480)
T KOG0271|consen 320 EQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFS-----PDGRYIASASFDKSVKLW 394 (480)
T ss_pred HHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEEC-----CCccEEEEeecccceeee
Confidence 1123567778888888 999999999999999999
Q ss_pred eeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeE
Q 021036 224 KCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLG 303 (318)
Q Consensus 224 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 303 (318)
+.++++ .+.+|.+|-+.|+.++|+.|.++|++|+.|.++++|++++.++.. ++++|.+.|++
T Consensus 395 --~g~tGk--~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~--------------DLpGh~DEVf~ 456 (480)
T KOG0271|consen 395 --DGRTGK--FLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQ--------------DLPGHADEVFA 456 (480)
T ss_pred --eCCCcc--hhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecc--------------cCCCCCceEEE
Confidence 788888 788999999999999999999999999999999999999988774 78889999999
Q ss_pred EEEcCCCcEEEEEe
Q 021036 304 MAVSPGNLVVAMVQ 317 (318)
Q Consensus 304 v~~sp~~~~l~~~~ 317 (318)
+.|+|||+.+++|.
T Consensus 457 vDwspDG~rV~sgg 470 (480)
T KOG0271|consen 457 VDWSPDGQRVASGG 470 (480)
T ss_pred EEecCCCceeecCC
Confidence 99999999999885
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=248.20 Aligned_cols=238 Identities=19% Similarity=0.225 Sum_probs=203.3
Q ss_pred CCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccc--------------------------cC
Q 021036 15 SNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVL--------------------------RL 68 (318)
Q Consensus 15 ~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~--------------------------~~ 68 (318)
.+...++|||-+|.+++|+.++...++++.. |... +.++.|+|.. .+
T Consensus 185 ~ds~~laT~swsG~~kvW~~~~~~~~~~l~g----H~~~---v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l 257 (459)
T KOG0272|consen 185 RDSKHLATGSWSGLVKVWSVPQCNLLQTLRG----HTSR---VGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDL 257 (459)
T ss_pred cCCCeEEEeecCCceeEeecCCcceeEEEec----cccc---eeeEEEccCCCccceeeeccCCceeeeccCCCcchhhh
Confidence 3456689999999999999998866655543 4444 2336666652 25
Q ss_pred CCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCc
Q 021036 69 SSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQV 148 (318)
Q Consensus 69 ~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~ 148 (318)
.+|...|..++|.|+|++|++++.|.+-++||++++. .+....+|...|.+++| .++|.
T Consensus 258 ~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~--------------ElL~QEGHs~~v~~iaf-------~~DGS 316 (459)
T KOG0272|consen 258 EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKS--------------ELLLQEGHSKGVFSIAF-------QPDGS 316 (459)
T ss_pred hcchhhheeeeecCCCceeeecccccchhhcccccch--------------hhHhhcccccccceeEe-------cCCCc
Confidence 6889999999999999999999999999999999854 33456799999999999 99999
Q ss_pred EEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccC
Q 021036 149 LLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDIS 228 (318)
Q Consensus 149 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~ 228 (318)
+++||+.|..-+|||+++|.++..+.+|.. +|..+.|+ |+|..+|+|+.|++++|||+.
T Consensus 317 L~~tGGlD~~~RvWDlRtgr~im~L~gH~k--------------~I~~V~fs-----PNGy~lATgs~Dnt~kVWDLR-- 375 (459)
T KOG0272|consen 317 LAATGGLDSLGRVWDLRTGRCIMFLAGHIK--------------EILSVAFS-----PNGYHLATGSSDNTCKVWDLR-- 375 (459)
T ss_pred eeeccCccchhheeecccCcEEEEeccccc--------------ceeeEeEC-----CCceEEeecCCCCcEEEeeec--
Confidence 999999999999999999999988877665 89999999 999999999999999999554
Q ss_pred CCeeeEeeeeecccCceeEEEEcC-CCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEc
Q 021036 229 CNKFDKVGSYNAHDQVVTGLAWAF-DGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVS 307 (318)
Q Consensus 229 ~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s 307 (318)
..+ ++..+.+|..-|+.|.|+| .|.+|+|++.|++++||...+..... .+.||.+.|.+++.+
T Consensus 376 ~r~--~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~k--------------sLaGHe~kV~s~Dis 439 (459)
T KOG0272|consen 376 MRS--ELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLK--------------SLAGHEGKVISLDIS 439 (459)
T ss_pred ccc--cceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccch--------------hhcCCccceEEEEec
Confidence 444 5788999999999999999 58899999999999999988765553 566788899999999
Q ss_pred CCCcEEEEEe
Q 021036 308 PGNLVVAMVQ 317 (318)
Q Consensus 308 p~~~~l~~~~ 317 (318)
||+++|+++.
T Consensus 440 ~d~~~i~t~s 449 (459)
T KOG0272|consen 440 PDSQAIATSS 449 (459)
T ss_pred cCCceEEEec
Confidence 9999999873
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=252.62 Aligned_cols=248 Identities=17% Similarity=0.215 Sum_probs=197.3
Q ss_pred cCCCCCccceEEeeCCCceeEeecCCCCCCCceecchhcccccc---ccceeeeeccc---ccCCCCcccccccCCCCCc
Q 021036 11 KMKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAM---LHSLAVAWSPV---LRLSSKKYPVPQNGSSNWF 84 (318)
Q Consensus 11 ~~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~w~p~---~~~~~~~~~v~~~~~s~~~ 84 (318)
++.+... .++.|-.|-.|++|.+...+..+.-........+.. .....+.-+.. ..+.+|.+||..+.|+|+.
T Consensus 385 ~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~ 463 (707)
T KOG0263|consen 385 EFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDR 463 (707)
T ss_pred eecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeecccc
Confidence 3444333 678888999999998875432222221111111000 00000111111 1277899999999999999
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEEC
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDG 164 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~ 164 (318)
++|++++.|++||+|.+.+. ..+..+++|..+|+.+.| +|.|.+|+|++.|++-++|..
T Consensus 464 rfLlScSED~svRLWsl~t~--------------s~~V~y~GH~~PVwdV~F-------~P~GyYFatas~D~tArLWs~ 522 (707)
T KOG0263|consen 464 RFLLSCSEDSSVRLWSLDTW--------------SCLVIYKGHLAPVWDVQF-------APRGYYFATASHDQTARLWST 522 (707)
T ss_pred cceeeccCCcceeeeecccc--------------eeEEEecCCCcceeeEEe-------cCCceEEEecCCCceeeeeec
Confidence 99999999999999999984 456788999999999999 899999999999999999999
Q ss_pred CCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCc
Q 021036 165 YIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQV 244 (318)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~ 244 (318)
.....+..+.+|- +.|.|+.|+ |+..++++|+.|.+|++| |..++. .++.|.||.++
T Consensus 523 d~~~PlRifaghl--------------sDV~cv~FH-----PNs~Y~aTGSsD~tVRlW--Dv~~G~--~VRiF~GH~~~ 579 (707)
T KOG0263|consen 523 DHNKPLRIFAGHL--------------SDVDCVSFH-----PNSNYVATGSSDRTVRLW--DVSTGN--SVRIFTGHKGP 579 (707)
T ss_pred ccCCchhhhcccc--------------cccceEEEC-----CcccccccCCCCceEEEE--EcCCCc--EEEEecCCCCc
Confidence 9877777766554 489999999 999999999999999999 666776 67889999999
Q ss_pred eeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 245 VTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 245 v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
|++++|+|+|++|++|+.||.|.+||+.++.+.. .+.+|.+.|+++.|+.||..||+|.
T Consensus 580 V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~--------------~l~~Ht~ti~SlsFS~dg~vLasgg 638 (707)
T KOG0263|consen 580 VTALAFSPCGRYLASGDEDGLIKIWDLANGSLVK--------------QLKGHTGTIYSLSFSRDGNVLASGG 638 (707)
T ss_pred eEEEEEcCCCceEeecccCCcEEEEEcCCCcchh--------------hhhcccCceeEEEEecCCCEEEecC
Confidence 9999999999999999999999999999877653 4556777999999999999999985
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-34 Score=218.20 Aligned_cols=231 Identities=18% Similarity=0.197 Sum_probs=189.8
Q ss_pred ccCcCCCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEE
Q 021036 8 TSNKMKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSIL 87 (318)
Q Consensus 8 ~~~~~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l 87 (318)
++.+....+...++++|.|+++.+|++......... |..++.+|...|.++..+++|++.
T Consensus 19 t~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~--------------------~~r~~~GHsH~v~dv~~s~dg~~a 78 (315)
T KOG0279|consen 19 TALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGV--------------------PVRRLTGHSHFVSDVVLSSDGNFA 78 (315)
T ss_pred EEEEeecCCCceEEEcccceEEEEEEeccCccccCc--------------------eeeeeeccceEecceEEccCCceE
Confidence 444555667888999999999999999876221111 233677899999999999999999
Q ss_pred EEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCc
Q 021036 88 AVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQ 167 (318)
Q Consensus 88 ~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 167 (318)
++++.|+.+++||+.++ +..+.|.+|...|.+++| +++.+.+++|+.|.+|++|++-.+
T Consensus 79 lS~swD~~lrlWDl~~g--------------~~t~~f~GH~~dVlsva~-------s~dn~qivSGSrDkTiklwnt~g~ 137 (315)
T KOG0279|consen 79 LSASWDGTLRLWDLATG--------------ESTRRFVGHTKDVLSVAF-------STDNRQIVSGSRDKTIKLWNTLGV 137 (315)
T ss_pred EeccccceEEEEEecCC--------------cEEEEEEecCCceEEEEe-------cCCCceeecCCCcceeeeeeeccc
Confidence 99999999999999985 466789999999999999 899999999999999999999765
Q ss_pred ceeeeecccccccccceeeeeecccceeEEEEeeccCCCC--ceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCce
Q 021036 168 ELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPR--LMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVV 245 (318)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~--~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v 245 (318)
......... +...|++++|+ |+ ..+|++++.|++|++| |+++.+ ....+.+|.+.+
T Consensus 138 ck~t~~~~~-------------~~~WVscvrfs-----P~~~~p~Ivs~s~DktvKvW--nl~~~~--l~~~~~gh~~~v 195 (315)
T KOG0279|consen 138 CKYTIHEDS-------------HREWVSCVRFS-----PNESNPIIVSASWDKTVKVW--NLRNCQ--LRTTFIGHSGYV 195 (315)
T ss_pred EEEEEecCC-------------CcCcEEEEEEc-----CCCCCcEEEEccCCceEEEE--ccCCcc--hhhccccccccE
Confidence 443322211 14489999999 66 6799999999999999 566655 566788999999
Q ss_pred eEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 246 TGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 246 ~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
+.+++||||..+++|+.||.+.+||++.++...... |...|.+++|+|+..+|+.+
T Consensus 196 ~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~---------------a~~~v~sl~fspnrywL~~a 251 (315)
T KOG0279|consen 196 NTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE---------------AFDIVNSLCFSPNRYWLCAA 251 (315)
T ss_pred EEEEECCCCCEEecCCCCceEEEEEccCCceeEecc---------------CCCeEeeEEecCCceeEeec
Confidence 999999999999999999999999999876643222 34589999999998887754
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=216.62 Aligned_cols=237 Identities=19% Similarity=0.226 Sum_probs=196.3
Q ss_pred CCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeeccccc---------------------------
Q 021036 15 SNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLR--------------------------- 67 (318)
Q Consensus 15 ~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~--------------------------- 67 (318)
.+...++++|+||.+.|||.-+......+..+ ... +..++++|.+.
T Consensus 65 ~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~----s~W---VMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v 137 (343)
T KOG0286|consen 65 TDSRRIVSASQDGKLIVWDSFTTNKVHAIPLP----SSW---VMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRV 137 (343)
T ss_pred CCcCeEEeeccCCeEEEEEcccccceeEEecC----cee---EEEEEECCCCCeEEecCcCceeEEEeccccccccccee
Confidence 45677999999999999999988777766652 223 22356666542
Q ss_pred ---CCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCC
Q 021036 68 ---LSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSS 144 (318)
Q Consensus 68 ---~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 144 (318)
+.+|.+-+.|+.|-.+ ..|++++.|.+.-+||+++ ++.++.|.+|.+.|.++++ +
T Consensus 138 ~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~--------------g~~~~~f~GH~gDV~slsl-------~ 195 (343)
T KOG0286|consen 138 SRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIET--------------GQQTQVFHGHTGDVMSLSL-------S 195 (343)
T ss_pred eeeecCccceeEEEEEcCC-CceEecCCCceEEEEEccc--------------ceEEEEecCCcccEEEEec-------C
Confidence 5578888999998884 5678899999999999999 4577899999999999999 6
Q ss_pred C-CCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEe
Q 021036 145 N-PQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLW 223 (318)
Q Consensus 145 ~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw 223 (318)
| +++.|++|+.|+..++||++.+.+.+.|.+|+. .|+.++|. |+|.-|++|+.|++.++|
T Consensus 196 p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghes--------------DINsv~ff-----P~G~afatGSDD~tcRly 256 (343)
T KOG0286|consen 196 PSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHES--------------DINSVRFF-----PSGDAFATGSDDATCRLY 256 (343)
T ss_pred CCCCCeEEecccccceeeeeccCcceeEeeccccc--------------ccceEEEc-----cCCCeeeecCCCceeEEE
Confidence 6 889999999999999999999999999988776 89999999 999999999999999999
Q ss_pred eeccCCCeeeEeeeee--cccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceee
Q 021036 224 KCDISCNKFDKVGSYN--AHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSC 301 (318)
Q Consensus 224 ~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 301 (318)
|++... .+..+. .-..+|++++||..|++|++|..|.++.+||.-.++... .+.+|..+|
T Consensus 257 --DlRaD~--~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg--------------~L~GHeNRv 318 (343)
T KOG0286|consen 257 --DLRADQ--ELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVG--------------VLAGHENRV 318 (343)
T ss_pred --eecCCc--EEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEE--------------EeeccCCee
Confidence 555554 344443 234689999999999999999999999999986655442 344577799
Q ss_pred eEEEEcCCCcEEEEEe
Q 021036 302 LGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 302 ~~v~~sp~~~~l~~~~ 317 (318)
.++..+|||.-+++|.
T Consensus 319 Scl~~s~DG~av~TgS 334 (343)
T KOG0286|consen 319 SCLGVSPDGMAVATGS 334 (343)
T ss_pred EEEEECCCCcEEEecc
Confidence 9999999999999974
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=230.82 Aligned_cols=208 Identities=19% Similarity=0.226 Sum_probs=182.3
Q ss_pred CCCC-CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeeccccc-----------------------
Q 021036 12 MKDS-NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLR----------------------- 67 (318)
Q Consensus 12 ~~~~-~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~----------------------- 67 (318)
+-|. +...++|++.||++++|++.+...++.+.. |...+. .++|+|++.
T Consensus 225 fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~g----H~~RVs---~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL 297 (459)
T KOG0272|consen 225 FHPVDSDLNLATASADGTVKLWKLSQETPLQDLEG----HLARVS---RVAFHPSGKFLGTASFDSTWRLWDLETKSELL 297 (459)
T ss_pred EccCCCccceeeeccCCceeeeccCCCcchhhhhc----chhhhe---eeeecCCCceeeecccccchhhcccccchhhH
Confidence 4444 355789999999999999998877777664 444433 389999876
Q ss_pred -CCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCC
Q 021036 68 -LSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNP 146 (318)
Q Consensus 68 -~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~ 146 (318)
..+|...|.+++|.++|.++++|+.|..-+|||++++. .+..+.+|..+|.+++| +|+
T Consensus 298 ~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr--------------~im~L~gH~k~I~~V~f-------sPN 356 (459)
T KOG0272|consen 298 LQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGR--------------CIMFLAGHIKEILSVAF-------SPN 356 (459)
T ss_pred hhcccccccceeEecCCCceeeccCccchhheeecccCc--------------EEEEecccccceeeEeE-------CCC
Confidence 33799999999999999999999999999999999965 56788999999999999 999
Q ss_pred CcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCC-CceEEEEEeCCCcEEEeee
Q 021036 147 QVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSP-RLMLLAVGKGSGSFDLWKC 225 (318)
Q Consensus 147 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~-~~~~l~~~~~dg~i~vw~~ 225 (318)
|..|+||+.|++++|||++..+++.++..|.. -|+.++|+ | .|.+|++++.|+++++|
T Consensus 357 Gy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n--------------lVS~Vk~~-----p~~g~fL~TasyD~t~kiW-- 415 (459)
T KOG0272|consen 357 GYHLATGSSDNTCKVWDLRMRSELYTIPAHSN--------------LVSQVKYS-----PQEGYFLVTASYDNTVKIW-- 415 (459)
T ss_pred ceEEeecCCCCcEEEeeecccccceecccccc--------------hhhheEec-----ccCCeEEEEcccCcceeee--
Confidence 99999999999999999999888888877665 88999999 6 78999999999999999
Q ss_pred ccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEE
Q 021036 226 DISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWI 270 (318)
Q Consensus 226 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd 270 (318)
..++. .++.++.||++.|.++++++++.+|++++.|+++++|.
T Consensus 416 s~~~~--~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 416 STRTW--SPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cCCCc--ccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 54444 48999999999999999999999999999999999995
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-33 Score=208.44 Aligned_cols=249 Identities=18% Similarity=0.213 Sum_probs=191.8
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccc-------ccccc-----------ceeeeecccccCCCCcccccc
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASR-------SAMLH-----------SLAVAWSPVLRLSSKKYPVPQ 77 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~-------~~~~~-----------~~~~~w~p~~~~~~~~~~v~~ 77 (318)
+.-.++++|.|.+||+|...+|.|..++........ ...+. +..-.-+|...+.+|...|+.
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVta 88 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTA 88 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEE
Confidence 334578999999999999999999888764321000 00000 000111223335578889999
Q ss_pred cCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCC
Q 021036 78 NGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDG 157 (318)
Q Consensus 78 ~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~ 157 (318)
+.|..+|+++++|++||+++|||++...+ .+. -.|.++|+++.. .|+...|++|..+|
T Consensus 89 VgF~~dgrWMyTgseDgt~kIWdlR~~~~--------------qR~-~~~~spVn~vvl-------hpnQteLis~dqsg 146 (311)
T KOG0315|consen 89 VGFQCDGRWMYTGSEDGTVKIWDLRSLSC--------------QRN-YQHNSPVNTVVL-------HPNQTELISGDQSG 146 (311)
T ss_pred EEEeecCeEEEecCCCceEEEEeccCccc--------------chh-ccCCCCcceEEe-------cCCcceEEeecCCC
Confidence 99999999999999999999999997443 233 356799999999 78888999999999
Q ss_pred cEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeecc--CCCeeeEe
Q 021036 158 SVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDI--SCNKFDKV 235 (318)
Q Consensus 158 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~--~~~~~~~~ 235 (318)
.|++||+....+...+.... ..+|.++.+. |+|.+++.+...|..++|++-. ....++++
T Consensus 147 ~irvWDl~~~~c~~~liPe~-------------~~~i~sl~v~-----~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~ 208 (311)
T KOG0315|consen 147 NIRVWDLGENSCTHELIPED-------------DTSIQSLTVM-----PDGSMLAAANNKGNCYVWRLLNHQTASELEPV 208 (311)
T ss_pred cEEEEEccCCccccccCCCC-------------CcceeeEEEc-----CCCcEEEEecCCccEEEEEccCCCccccceEh
Confidence 99999999876655543332 2378999999 9999999999999999996422 12345688
Q ss_pred eeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 236 GSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 236 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
..++.|++.+....+||++++||+++.|.+++||+..+--... ..+.+|...+..++||.||+||++
T Consensus 209 ~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle-------------~~l~gh~rWvWdc~FS~dg~YlvT 275 (311)
T KOG0315|consen 209 HKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLE-------------LVLTGHQRWVWDCAFSADGEYLVT 275 (311)
T ss_pred hheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeE-------------EEeecCCceEEeeeeccCccEEEe
Confidence 8899999999999999999999999999999999987751111 133446679999999999999999
Q ss_pred Ee
Q 021036 316 VQ 317 (318)
Q Consensus 316 ~~ 317 (318)
|.
T Consensus 276 as 277 (311)
T KOG0315|consen 276 AS 277 (311)
T ss_pred cC
Confidence 74
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=223.08 Aligned_cols=169 Identities=24% Similarity=0.356 Sum_probs=146.6
Q ss_pred CCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCC
Q 021036 68 LSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQ 147 (318)
Q Consensus 68 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~ 147 (318)
+.+|..+|.|+.|+|+|..|++|+.|.++|+||+.+ ..+..+.++|...|.|++| +|+|
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~T--------------eTp~~t~KgH~~WVlcvaw-------sPDg 169 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDT--------------ETPLFTCKGHKNWVLCVAW-------SPDG 169 (480)
T ss_pred cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCC--------------CCcceeecCCccEEEEEEE-------CCCc
Confidence 778999999999999999999999999999999998 4467889999999999999 9999
Q ss_pred cEEEEEeCCCcEEEEECCCcceee-eecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeec
Q 021036 148 VLLVTGSSDGSVRIWDGYIQELQK-SAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCD 226 (318)
Q Consensus 148 ~~l~s~~~d~~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~ 226 (318)
+.|++|+.||+|++||..+|+++. .+.+ |...|++++|.+---.|...+||+++.||.|+|| |
T Consensus 170 k~iASG~~dg~I~lwdpktg~~~g~~l~g--------------H~K~It~Lawep~hl~p~~r~las~skDg~vrIW--d 233 (480)
T KOG0271|consen 170 KKIASGSKDGSIRLWDPKTGQQIGRALRG--------------HKKWITALAWEPLHLVPPCRRLASSSKDGSVRIW--D 233 (480)
T ss_pred chhhccccCCeEEEecCCCCCcccccccC--------------cccceeEEeecccccCCCccceecccCCCCEEEE--E
Confidence 999999999999999999887653 3444 4559999999843333667899999999999999 5
Q ss_pred cCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCce
Q 021036 227 ISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSL 276 (318)
Q Consensus 227 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 276 (318)
...++ .+..+.+|+.+|+|+.|--+| +|++|+.|++|++|+...+.+
T Consensus 234 ~~~~~--~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~ 280 (480)
T KOG0271|consen 234 TKLGT--CVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKL 280 (480)
T ss_pred ccCce--EEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhH
Confidence 55555 677889999999999997665 899999999999999876443
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=224.85 Aligned_cols=248 Identities=19% Similarity=0.241 Sum_probs=188.4
Q ss_pred CCCCCccceEEeeCCCceeEeecCCC--CCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEE
Q 021036 12 MKDSNTHPTVAASKSKGNSITKIPSN--CCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAV 89 (318)
Q Consensus 12 ~~~~~~~~~~t~s~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~ 89 (318)
+.+.....+++++.|-+.|+|++... .+...... .|.-.. +..=.|+ ...|++++++.+|.+||+
T Consensus 186 WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~l---rh~~~~----~~~s~~~------nkdVT~L~Wn~~G~~Lat 252 (524)
T KOG0273|consen 186 WNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVL---RHCIRE----GGKSVPS------NKDVTSLDWNNDGTLLAT 252 (524)
T ss_pred cCchhhhhhhccCCccceeeeeehhhccccchhhhh---hhhhhh----hcccCCc------cCCcceEEecCCCCeEEE
Confidence 34444455788999999999998752 11111100 011000 0000011 123444444444599999
Q ss_pred ecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcce
Q 021036 90 GGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQEL 169 (318)
Q Consensus 90 g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 169 (318)
|+.||.++||+... .++.++..|.++|.++.| +..|.+|++++.|+++.+||..+++.
T Consensus 253 G~~~G~~riw~~~G---------------~l~~tl~~HkgPI~slKW-------nk~G~yilS~~vD~ttilwd~~~g~~ 310 (524)
T KOG0273|consen 253 GSEDGEARIWNKDG---------------NLISTLGQHKGPIFSLKW-------NKKGTYILSGGVDGTTILWDAHTGTV 310 (524)
T ss_pred eecCcEEEEEecCc---------------hhhhhhhccCCceEEEEE-------cCCCCEEEeccCCccEEEEeccCceE
Confidence 99999999999874 566788999999999999 99999999999999999999999988
Q ss_pred eeeecccccc-cccce--------------------------eeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEE
Q 021036 170 QKSAEAHCVP-FSLLK--------------------------EVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDL 222 (318)
Q Consensus 170 ~~~~~~~~~~-~~~~~--------------------------~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~v 222 (318)
.+.+..+..+ ..+.+ ....+|..+|.++.|+ |.+.+|++++.|+++++
T Consensus 311 ~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n-----~tg~LLaS~SdD~Tlki 385 (524)
T KOG0273|consen 311 KQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWN-----PTGSLLASCSDDGTLKI 385 (524)
T ss_pred EEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEEC-----CCCceEEEecCCCeeEe
Confidence 8877766655 21211 2445799999999999 99999999999999999
Q ss_pred eeeccCCCeeeEeeeeecccCceeEEEEcCCC---------CEEEEecCCCcEEEEEecCCceeeeecCCCCCCcccccc
Q 021036 223 WKCDISCNKFDKVGSYNAHDQVVTGLAWAFDG---------CCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTD 293 (318)
Q Consensus 223 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---------~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 293 (318)
| .+.... ....+.+|...|+.+.|+|.| ..+++++.|++|++||+..+.... .
T Consensus 386 W--s~~~~~--~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~--------------~ 447 (524)
T KOG0273|consen 386 W--SMGQSN--SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIH--------------T 447 (524)
T ss_pred e--ecCCCc--chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeE--------------e
Confidence 9 544444 677889999999999999964 389999999999999998877664 3
Q ss_pred CCCcceeeeEEEEcCCCcEEEEEe
Q 021036 294 LPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 294 ~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
+..|..+|++|+|+|+|+++|+|.
T Consensus 448 f~kH~~pVysvafS~~g~ylAsGs 471 (524)
T KOG0273|consen 448 LMKHQEPVYSVAFSPNGRYLASGS 471 (524)
T ss_pred eccCCCceEEEEecCCCcEEEecC
Confidence 455778999999999999999985
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-31 Score=200.66 Aligned_cols=239 Identities=19% Similarity=0.195 Sum_probs=181.6
Q ss_pred ceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEE
Q 021036 19 PTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSL 98 (318)
Q Consensus 19 ~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i 98 (318)
.+++++.|+.||+|+...+......+.-.-+|+.. +..++|+|.+ ++|++++.|.++.|
T Consensus 29 ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrs---VRsvAwsp~g------------------~~La~aSFD~t~~I 87 (312)
T KOG0645|consen 29 ILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRS---VRSVAWSPHG------------------RYLASASFDATVVI 87 (312)
T ss_pred EEEeecCCceEEEEecCCCCcEEEEEeccccchhe---eeeeeecCCC------------------cEEEEeeccceEEE
Confidence 68999999999999988633322221111123333 3346666666 99999999999999
Q ss_pred EEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeeccccc
Q 021036 99 WRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCV 178 (318)
Q Consensus 99 w~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~ 178 (318)
|.-..++ .+.+..+.+|...|.|++| +.+|++|++|++|+.|.||.+..+......
T Consensus 88 w~k~~~e------------fecv~~lEGHEnEVK~Vaw-------s~sG~~LATCSRDKSVWiWe~deddEfec~----- 143 (312)
T KOG0645|consen 88 WKKEDGE------------FECVATLEGHENEVKCVAW-------SASGNYLATCSRDKSVWIWEIDEDDEFECI----- 143 (312)
T ss_pred eecCCCc------------eeEEeeeeccccceeEEEE-------cCCCCEEEEeeCCCeEEEEEecCCCcEEEE-----
Confidence 9988776 6788999999999999999 999999999999999999999865433322
Q ss_pred ccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEE
Q 021036 179 PFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLY 258 (318)
Q Consensus 179 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 258 (318)
.++..|...|..+.|+ |...+|++++.|.+|++|.-+. ...+..++++.+|...|.+++|++.|..|+
T Consensus 144 ------aVL~~HtqDVK~V~WH-----Pt~dlL~S~SYDnTIk~~~~~~-dddW~c~~tl~g~~~TVW~~~F~~~G~rl~ 211 (312)
T KOG0645|consen 144 ------AVLQEHTQDVKHVIWH-----PTEDLLFSCSYDNTIKVYRDED-DDDWECVQTLDGHENTVWSLAFDNIGSRLV 211 (312)
T ss_pred ------eeeccccccccEEEEc-----CCcceeEEeccCCeEEEEeecC-CCCeeEEEEecCccceEEEEEecCCCceEE
Confidence 1223455589999999 9999999999999999995332 777889999999999999999999999999
Q ss_pred EecCCCcEEEEEec-------CCceeeeecCCCCCCcc-ccc-----------------------cCCCcceeeeEEEEc
Q 021036 259 SCSQDNFVRSWIFH-------GNSLSQVSIPTNTPGLQ-SCT-----------------------DLPDAFVSCLGMAVS 307 (318)
Q Consensus 259 s~~~d~~v~iwd~~-------~~~~~~~~~~~~~~~~~-~~~-----------------------~~~~h~~~v~~v~~s 307 (318)
++++|++++||-.. .+.+..+++. ...++ +.. ....|...|++|+|+
T Consensus 212 s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~ 289 (312)
T KOG0645|consen 212 SCSDDGTVSIWRLYTDLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWN 289 (312)
T ss_pred EecCCcceEeeeeccCcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEc
Confidence 99999999999843 2444444443 11111 100 112688899999999
Q ss_pred CC-CcEEEEE
Q 021036 308 PG-NLVVAMV 316 (318)
Q Consensus 308 p~-~~~l~~~ 316 (318)
|. ...|++|
T Consensus 290 p~~~~~L~s~ 299 (312)
T KOG0645|consen 290 PKVSNRLASG 299 (312)
T ss_pred CCCCCceeec
Confidence 94 4555554
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-31 Score=215.16 Aligned_cols=235 Identities=16% Similarity=0.232 Sum_probs=186.6
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCc
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGK 95 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~ 95 (318)
+...+++|+.||.+|||+.+... ...+.. |++.+.. ++|+..+ ++|++++.||+
T Consensus 246 ~G~~LatG~~~G~~riw~~~G~l-~~tl~~----HkgPI~s---lKWnk~G------------------~yilS~~vD~t 299 (524)
T KOG0273|consen 246 DGTLLATGSEDGEARIWNKDGNL-ISTLGQ----HKGPIFS---LKWNKKG------------------TYILSGGVDGT 299 (524)
T ss_pred CCCeEEEeecCcEEEEEecCchh-hhhhhc----cCCceEE---EEEcCCC------------------CEEEeccCCcc
Confidence 35668999999999999987543 233332 5665443 7787777 99999999999
Q ss_pred EEEEEccCCccccccc--cc---------------c----------CCceeEEeeeccccccEEEEEeeeecCCCCCCCc
Q 021036 96 VSLWRICVPKCYSVED--CK---------------V----------PTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQV 148 (318)
Q Consensus 96 i~iw~~~~~~~~~~~~--~~---------------~----------~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~ 148 (318)
+.+||..++++.+... .. . -..-.++.++.+|.++|.++.| .+.+.
T Consensus 300 tilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~-------n~tg~ 372 (524)
T KOG0273|consen 300 TILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKW-------NPTGS 372 (524)
T ss_pred EEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEE-------CCCCc
Confidence 9999998877644311 00 0 0112456788899999999999 89999
Q ss_pred EEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeec----cCCCCceEEEEEeCCCcEEEee
Q 021036 149 LLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILP----VQSPRLMLLAVGKGSGSFDLWK 224 (318)
Q Consensus 149 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~----~~~~~~~~l~~~~~dg~i~vw~ 224 (318)
+|++++.|++++||.+......+.+..|.. .|+.+.|++. +.|..+..+++++.|++|++|
T Consensus 373 LLaS~SdD~TlkiWs~~~~~~~~~l~~Hsk--------------ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lw- 437 (524)
T KOG0273|consen 373 LLASCSDDGTLKIWSMGQSNSVHDLQAHSK--------------EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLW- 437 (524)
T ss_pred eEEEecCCCeeEeeecCCCcchhhhhhhcc--------------ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEE-
Confidence 999999999999999988888887777665 6778888731 223346689999999999999
Q ss_pred eccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEE
Q 021036 225 CDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGM 304 (318)
Q Consensus 225 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v 304 (318)
|...+. ++..|..|..+|++++|+|+|+++|+|+.||.|.+|+++++++.+..... +.|..+
T Consensus 438 -dv~~gv--~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~---------------~~Ifel 499 (524)
T KOG0273|consen 438 -DVESGV--PIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGT---------------GGIFEL 499 (524)
T ss_pred -EccCCc--eeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCC---------------CeEEEE
Confidence 666776 88899999999999999999999999999999999999998887644333 368999
Q ss_pred EEcCCCcEEEEE
Q 021036 305 AVSPGNLVVAMV 316 (318)
Q Consensus 305 ~~sp~~~~l~~~ 316 (318)
+|+.+|.+|..+
T Consensus 500 ~Wn~~G~kl~~~ 511 (524)
T KOG0273|consen 500 CWNAAGDKLGAC 511 (524)
T ss_pred EEcCCCCEEEEE
Confidence 999999887754
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-31 Score=208.02 Aligned_cols=244 Identities=14% Similarity=0.201 Sum_probs=196.3
Q ss_pred ccceEEeeCCCceeEeecCCCCCCCceecchhccccccccce----------------eeeecccc------cCCCCccc
Q 021036 17 THPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSL----------------AVAWSPVL------RLSSKKYP 74 (318)
Q Consensus 17 ~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~w~p~~------~~~~~~~~ 74 (318)
.-.++++|.|+++++||..++++...+.. |.+.+.++. .-.|+-.. .+.+|..-
T Consensus 120 ~~~v~~as~d~tikv~D~~tg~~e~~LrG----Ht~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~ 195 (406)
T KOG0295|consen 120 EALVVSASEDATIKVFDTETGELERSLRG----HTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHG 195 (406)
T ss_pred ceEEEEecCCceEEEEEccchhhhhhhhc----cccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccc
Confidence 34468888999999999999988555443 333322200 11233222 15578888
Q ss_pred ccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEe
Q 021036 75 VPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS 154 (318)
Q Consensus 75 v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~ 154 (318)
|.++.+-|-|.++++++.|.+|+.|++.++. .+.++.+|...|.-++. ..+|.++++++
T Consensus 196 vS~V~f~P~gd~ilS~srD~tik~We~~tg~--------------cv~t~~~h~ewvr~v~v-------~~DGti~As~s 254 (406)
T KOG0295|consen 196 VSSVFFLPLGDHILSCSRDNTIKAWECDTGY--------------CVKTFPGHSEWVRMVRV-------NQDGTIIASCS 254 (406)
T ss_pred eeeEEEEecCCeeeecccccceeEEecccce--------------eEEeccCchHhEEEEEe-------cCCeeEEEecC
Confidence 9999999999999999999999999999965 56889999999999999 89999999999
Q ss_pred CCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCC----------CCceEEEEEeCCCcEEEee
Q 021036 155 SDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQS----------PRLMLLAVGKGSGSFDLWK 224 (318)
Q Consensus 155 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~----------~~~~~l~~~~~dg~i~vw~ 224 (318)
.|.+|++|-+.++++...+..|+. +|.+++|.+...- ..+.++.+++.|++|++|
T Consensus 255 ~dqtl~vW~~~t~~~k~~lR~hEh--------------~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~w- 319 (406)
T KOG0295|consen 255 NDQTLRVWVVATKQCKAELREHEH--------------PVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIW- 319 (406)
T ss_pred CCceEEEEEeccchhhhhhhcccc--------------ceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEE-
Confidence 999999999999988877776665 6777777632111 124699999999999999
Q ss_pred eccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEE
Q 021036 225 CDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGM 304 (318)
Q Consensus 225 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v 304 (318)
|+.++. ++.++.+|...|..++|+|.|+||+++.+|+++++||++++.+..... .|..-|+++
T Consensus 320 -dv~tg~--cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~--------------ah~hfvt~l 382 (406)
T KOG0295|consen 320 -DVSTGM--CLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE--------------AHEHFVTSL 382 (406)
T ss_pred -eccCCe--EEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC--------------CCcceeEEE
Confidence 677876 788999999999999999999999999999999999999877654322 244588999
Q ss_pred EEcCCCcEEEEEe
Q 021036 305 AVSPGNLVVAMVQ 317 (318)
Q Consensus 305 ~~sp~~~~l~~~~ 317 (318)
.|+.+..++++|+
T Consensus 383 Dfh~~~p~VvTGs 395 (406)
T KOG0295|consen 383 DFHKTAPYVVTGS 395 (406)
T ss_pred ecCCCCceEEecc
Confidence 9999999999985
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=231.84 Aligned_cols=232 Identities=21% Similarity=0.288 Sum_probs=185.1
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCc
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGK 95 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~ 95 (318)
+...++++|+|+++|+|.+.+..++.... +|.+||.++.|+|.|-++|+++.|++
T Consensus 462 d~rfLlScSED~svRLWsl~t~s~~V~y~-------------------------GH~~PVwdV~F~P~GyYFatas~D~t 516 (707)
T KOG0263|consen 462 DRRFLLSCSEDSSVRLWSLDTWSCLVIYK-------------------------GHLAPVWDVQFAPRGYYFATASHDQT 516 (707)
T ss_pred cccceeeccCCcceeeeecccceeEEEec-------------------------CCCcceeeEEecCCceEEEecCCCce
Confidence 34558999999999999999877633332 45556666666666699999999999
Q ss_pred EEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecc
Q 021036 96 VSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEA 175 (318)
Q Consensus 96 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 175 (318)
.++|.... ..+++.+.+|.+.|.|+.| .|+..|+++||.|.+|++||+.+|..+..|.+
T Consensus 517 ArLWs~d~--------------~~PlRifaghlsDV~cv~F-------HPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~G 575 (707)
T KOG0263|consen 517 ARLWSTDH--------------NKPLRIFAGHLSDVDCVSF-------HPNSNYVATGSSDRTVRLWDVSTGNSVRIFTG 575 (707)
T ss_pred eeeeeccc--------------CCchhhhcccccccceEEE-------CCcccccccCCCCceEEEEEcCCCcEEEEecC
Confidence 99999987 3577899999999999999 89999999999999999999999999888765
Q ss_pred cccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCC
Q 021036 176 HCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGC 255 (318)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 255 (318)
|. ++|.+++|+ |+|.+|++|+.||.|.+| |+.+++ .+..+.+|++.|.++.|+.+|.
T Consensus 576 H~--------------~~V~al~~S-----p~Gr~LaSg~ed~~I~iW--Dl~~~~--~v~~l~~Ht~ti~SlsFS~dg~ 632 (707)
T KOG0263|consen 576 HK--------------GPVTALAFS-----PCGRYLASGDEDGLIKIW--DLANGS--LVKQLKGHTGTIYSLSFSRDGN 632 (707)
T ss_pred CC--------------CceEEEEEc-----CCCceEeecccCCcEEEE--EcCCCc--chhhhhcccCceeEEEEecCCC
Confidence 54 599999999 999999999999999999 677776 7888999999999999999999
Q ss_pred EEEEecCCCcEEEEEecCCcee----eeecC------CCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 256 CLYSCSQDNFVRSWIFHGNSLS----QVSIP------TNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 256 ~l~s~~~d~~v~iwd~~~~~~~----~~~~~------~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
.||+|+.|.+|++||+..-... .+... +....-..-..+.....+|.++.|.-.+..|+.|
T Consensus 633 vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 633 VLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred EEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEeccceeEEec
Confidence 9999999999999998652221 11000 0000000011223455699999999887777765
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-30 Score=223.78 Aligned_cols=242 Identities=19% Similarity=0.289 Sum_probs=197.8
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhcccccccc---------------ceeeeecccc---cCCCCcccccc
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLH---------------SLAVAWSPVL---RLSSKKYPVPQ 77 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~w~p~~---~~~~~~~~v~~ 77 (318)
..+.+++|-.+|...+++++...+++.++..+......... .+...|.... ..++|...+.+
T Consensus 276 ~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~ 355 (893)
T KOG0291|consen 276 GTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITS 355 (893)
T ss_pred CceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceee
Confidence 34558899999999999999988887776654321111100 0112332221 15689999999
Q ss_pred cCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCC
Q 021036 78 NGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDG 157 (318)
Q Consensus 78 ~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~ 157 (318)
++++|||+++|+|+.||.|+|||...+- ...++..|++.|+.+.| ...|+.+++++.||
T Consensus 356 l~YSpDgq~iaTG~eDgKVKvWn~~Sgf--------------C~vTFteHts~Vt~v~f-------~~~g~~llssSLDG 414 (893)
T KOG0291|consen 356 LAYSPDGQLIATGAEDGKVKVWNTQSGF--------------CFVTFTEHTSGVTAVQF-------TARGNVLLSSSLDG 414 (893)
T ss_pred EEECCCCcEEEeccCCCcEEEEeccCce--------------EEEEeccCCCceEEEEE-------EecCCEEEEeecCC
Confidence 9999999999999999999999999854 55789999999999999 89999999999999
Q ss_pred cEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCc-EEEeeeccCCCeeeEee
Q 021036 158 SVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGS-FDLWKCDISCNKFDKVG 236 (318)
Q Consensus 158 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~-i~vw~~~~~~~~~~~~~ 236 (318)
+|+.||+.......++..+.. ....+++.+ |.|.++..|+.|.. |.+| +.++++ .+.
T Consensus 415 tVRAwDlkRYrNfRTft~P~p-------------~QfscvavD-----~sGelV~AG~~d~F~IfvW--S~qTGq--llD 472 (893)
T KOG0291|consen 415 TVRAWDLKRYRNFRTFTSPEP-------------IQFSCVAVD-----PSGELVCAGAQDSFEIFVW--SVQTGQ--LLD 472 (893)
T ss_pred eEEeeeecccceeeeecCCCc-------------eeeeEEEEc-----CCCCEEEeeccceEEEEEE--EeecCe--eee
Confidence 999999999988888875542 256788888 89999999997765 8899 788888 777
Q ss_pred eeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCC--ceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEE
Q 021036 237 SYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGN--SLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVA 314 (318)
Q Consensus 237 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~ 314 (318)
.+.||+++|.+++|+|++..|++++.|.+|++||+-.. ....+.... .+..++|.|||+-||
T Consensus 473 iLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~s----------------dvl~vsfrPdG~ela 536 (893)
T KOG0291|consen 473 ILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRS----------------DVLAVSFRPDGKELA 536 (893)
T ss_pred hhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeecc----------------ceeEEEEcCCCCeEE
Confidence 89999999999999999999999999999999999654 555555433 789999999999998
Q ss_pred EE
Q 021036 315 MV 316 (318)
Q Consensus 315 ~~ 316 (318)
++
T Consensus 537 Va 538 (893)
T KOG0291|consen 537 VA 538 (893)
T ss_pred EE
Confidence 75
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.8e-30 Score=199.00 Aligned_cols=228 Identities=16% Similarity=0.230 Sum_probs=168.0
Q ss_pred CCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCC
Q 021036 14 DSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRS 93 (318)
Q Consensus 14 ~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~d 93 (318)
.++.+..+++|.|+++|+||+.+++..+.+. +|...|++++++++...+++|+.|
T Consensus 72 s~dg~~alS~swD~~lrlWDl~~g~~t~~f~-------------------------GH~~dVlsva~s~dn~qivSGSrD 126 (315)
T KOG0279|consen 72 SSDGNFALSASWDGTLRLWDLATGESTRRFV-------------------------GHTKDVLSVAFSTDNRQIVSGSRD 126 (315)
T ss_pred ccCCceEEeccccceEEEEEecCCcEEEEEE-------------------------ecCCceEEEEecCCCceeecCCCc
Confidence 3566778999999999999999986543333 344444444444444999999999
Q ss_pred CcEEEEEccCCccccccccccCCceeEEeeec--cccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceee
Q 021036 94 GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQ--AHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQK 171 (318)
Q Consensus 94 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~ 171 (318)
.+|++|+..... ..++. .+.+.|+|++|.|.. ...+|++++.|++|++||+++-+...
T Consensus 127 kTiklwnt~g~c---------------k~t~~~~~~~~WVscvrfsP~~-----~~p~Ivs~s~DktvKvWnl~~~~l~~ 186 (315)
T KOG0279|consen 127 KTIKLWNTLGVC---------------KYTIHEDSHREWVSCVRFSPNE-----SNPIIVSASWDKTVKVWNLRNCQLRT 186 (315)
T ss_pred ceeeeeeecccE---------------EEEEecCCCcCcEEEEEEcCCC-----CCcEEEEccCCceEEEEccCCcchhh
Confidence 999999998532 22333 237899999994321 25689999999999999999988777
Q ss_pred eecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEc
Q 021036 172 SAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWA 251 (318)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 251 (318)
.+.+|. +.++.+.++ |||.+.++|+.||.+.+| |++.++ .++.+ +|...|.+++|+
T Consensus 187 ~~~gh~--------------~~v~t~~vS-----pDGslcasGgkdg~~~Lw--dL~~~k--~lysl-~a~~~v~sl~fs 242 (315)
T KOG0279|consen 187 TFIGHS--------------GYVNTVTVS-----PDGSLCASGGKDGEAMLW--DLNEGK--NLYSL-EAFDIVNSLCFS 242 (315)
T ss_pred cccccc--------------ccEEEEEEC-----CCCCEEecCCCCceEEEE--EccCCc--eeEec-cCCCeEeeEEec
Confidence 776554 489999999 999999999999999999 555655 45554 588899999999
Q ss_pred CCCCEEEEecCCCcEEEEEecCCcee-eeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 252 FDGCCLYSCSQDNFVRSWIFHGNSLS-QVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 252 ~~~~~l~s~~~d~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
|+.-+|+.+ .+-.|+|||+.++... .+.....++ ..........+++|++||+.|.+|-
T Consensus 243 pnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~------s~~~~~~~clslaws~dG~tLf~g~ 302 (315)
T KOG0279|consen 243 PNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGP------SSKAGDPICLSLAWSADGQTLFAGY 302 (315)
T ss_pred CCceeEeec-cCCceEEEeccchhhhhhcccccccc------ccccCCcEEEEEEEcCCCcEEEeee
Confidence 997655544 4556999999886543 222211111 1111223678999999999998873
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-30 Score=197.80 Aligned_cols=191 Identities=17% Similarity=0.233 Sum_probs=156.5
Q ss_pred ccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEe
Q 021036 75 VPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS 154 (318)
Q Consensus 75 v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~ 154 (318)
|..++++|+|+++|+|+.|+...||++.+.+. ....+..+.+.+|.+.+.|..| .. ...|+|++
T Consensus 100 VMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~--------~g~~~v~r~l~gHtgylScC~f-------~d-D~~ilT~S 163 (343)
T KOG0286|consen 100 VMTCAYSPSGNFVACGGLDNKCSIYPLSTRDA--------EGNVRVSRELAGHTGYLSCCRF-------LD-DNHILTGS 163 (343)
T ss_pred EEEEEECCCCCeEEecCcCceeEEEecccccc--------cccceeeeeecCccceeEEEEE-------cC-CCceEecC
Confidence 55666667777777776666666666664310 0113455678999999999999 55 55899999
Q ss_pred CCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCC-CceEEEEEeCCCcEEEeeeccCCCeee
Q 021036 155 SDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSP-RLMLLAVGKGSGSFDLWKCDISCNKFD 233 (318)
Q Consensus 155 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~ 233 (318)
.|.+..+||+++++....+.+|.. .|.+|.++ | +++.|++|+.|+..++| |++.+.
T Consensus 164 GD~TCalWDie~g~~~~~f~GH~g--------------DV~slsl~-----p~~~ntFvSg~cD~~aklW--D~R~~~-- 220 (343)
T KOG0286|consen 164 GDMTCALWDIETGQQTQVFHGHTG--------------DVMSLSLS-----PSDGNTFVSGGCDKSAKLW--DVRSGQ-- 220 (343)
T ss_pred CCceEEEEEcccceEEEEecCCcc--------------cEEEEecC-----CCCCCeEEecccccceeee--eccCcc--
Confidence 999999999999999988877664 88999998 6 99999999999999999 677776
Q ss_pred EeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEE
Q 021036 234 KVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVV 313 (318)
Q Consensus 234 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l 313 (318)
.+++|.+|+..|.++.|.|+|.-|++|++|++.++||++..+...+..++.. ..+|++|+||..|++|
T Consensus 221 c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~------------~~gitSv~FS~SGRlL 288 (343)
T KOG0286|consen 221 CVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSI------------ICGITSVAFSKSGRLL 288 (343)
T ss_pred eeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcc------------cCCceeEEEcccccEE
Confidence 7889999999999999999999999999999999999998766655444432 2489999999999999
Q ss_pred EEE
Q 021036 314 AMV 316 (318)
Q Consensus 314 ~~~ 316 (318)
..|
T Consensus 289 fag 291 (343)
T KOG0286|consen 289 FAG 291 (343)
T ss_pred Eee
Confidence 886
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=209.39 Aligned_cols=278 Identities=17% Similarity=0.172 Sum_probs=206.1
Q ss_pred eccCcCCCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeeccccc-------------------
Q 021036 7 FTSNKMKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLR------------------- 67 (318)
Q Consensus 7 ~~~~~~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~------------------- 67 (318)
+++-.++++-+-+++|+|.|+++.+++-+-.+....+.. |... +.|+.++|++.
T Consensus 150 ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~----HskF---V~~VRysPDG~~Fat~gsDgki~iyDGktg 222 (603)
T KOG0318|consen 150 INSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFRE----HSKF---VNCVRYSPDGSRFATAGSDGKIYIYDGKTG 222 (603)
T ss_pred EeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccc----cccc---eeeEEECCCCCeEEEecCCccEEEEcCCCc
Confidence 355677888888899999999999998765443222221 3333 55688888864
Q ss_pred -----CC---CCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccc----------------------------
Q 021036 68 -----LS---SKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVED---------------------------- 111 (318)
Q Consensus 68 -----~~---~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~---------------------------- 111 (318)
+. +|.+.|+++.++||++.+++++.|.+++|||+.+.++.+...
T Consensus 223 e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~i 302 (603)
T KOG0318|consen 223 EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTI 302 (603)
T ss_pred cEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEE
Confidence 22 699999999999999999999999999999999876543210
Q ss_pred -cccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeee-ccccccc---------
Q 021036 112 -CKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSA-EAHCVPF--------- 180 (318)
Q Consensus 112 -~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~-~~~~~~~--------- 180 (318)
.-.+.+...++.+.+|...|+++.. ++++++|++|+.||.|.-|+..++..-... ..|...+
T Consensus 303 n~ln~~d~~~~~~i~GHnK~ITaLtv-------~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~ 375 (603)
T KOG0318|consen 303 NYLNPSDPSVLKVISGHNKSITALTV-------SPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESG 375 (603)
T ss_pred EEecccCCChhheecccccceeEEEE-------cCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCC
Confidence 0112334567788999999999999 899999999999999999999876433211 0000000
Q ss_pred -----------ccc------------------------------------ee----------eeeecccceeEEEEeecc
Q 021036 181 -----------SLL------------------------------------KE----------VVTVNTVPISVLSLILPV 203 (318)
Q Consensus 181 -----------~~~------------------------------------~~----------~~~~~~~~v~~l~~~~~~ 203 (318)
+.. .. ....-.....+++++
T Consensus 376 ~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~--- 452 (603)
T KOG0318|consen 376 ELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVS--- 452 (603)
T ss_pred cEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEc---
Confidence 000 00 000112345677888
Q ss_pred CCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCC
Q 021036 204 QSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPT 283 (318)
Q Consensus 204 ~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 283 (318)
|++..+++|+.|+.|++|.+ ..........+..|.++|++++|+||+.+||++...+.+.+||+.+++.....
T Consensus 453 --~~~~~vaVGG~Dgkvhvysl--~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~--- 525 (603)
T KOG0318|consen 453 --PDGSEVAVGGQDGKVHVYSL--SGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNR--- 525 (603)
T ss_pred --CCCCEEEEecccceEEEEEe--cCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecce---
Confidence 99999999999999999954 44443345556779999999999999999999999999999999987774321
Q ss_pred CCCCccccccCCCcceeeeEEEEcCCCcEEEEEeC
Q 021036 284 NTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQI 318 (318)
Q Consensus 284 ~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~~ 318 (318)
..-|+++|.+|+|+|+.+++|+|.+
T Consensus 526 ----------w~FHtakI~~~aWsP~n~~vATGSl 550 (603)
T KOG0318|consen 526 ----------WAFHTAKINCVAWSPNNKLVATGSL 550 (603)
T ss_pred ----------eeeeeeeEEEEEeCCCceEEEeccc
Confidence 1227789999999999999999863
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-31 Score=213.06 Aligned_cols=238 Identities=18% Similarity=0.210 Sum_probs=192.6
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeeccccc-----------------------CCC-C
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLR-----------------------LSS-K 71 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~-----------------------~~~-~ 71 (318)
+...+++|++.|.+.+|+..+-...... +.|... +.++.|++++. +++ |
T Consensus 107 eGRRLltgs~SGEFtLWNg~~fnFEtil----QaHDs~---Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh 179 (464)
T KOG0284|consen 107 EGRRLLTGSQSGEFTLWNGTSFNFETIL----QAHDSP---VRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHH 179 (464)
T ss_pred CCceeEeecccccEEEecCceeeHHHHh----hhhccc---ceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhh
Confidence 3467899999999999988543221111 235554 44477777654 234 4
Q ss_pred cccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEE
Q 021036 72 KYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLV 151 (318)
Q Consensus 72 ~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~ 151 (318)
..+|++++|||....+++++.||+|+|||...++ ..+.+.+|.-.|.+++| .|.-.+++
T Consensus 180 ~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~k--------------ee~vL~GHgwdVksvdW-------HP~kgLia 238 (464)
T KOG0284|consen 180 AEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPK--------------EERVLRGHGWDVKSVDW-------HPTKGLIA 238 (464)
T ss_pred hhhhheeccCCCCceeEEecCCCeEEEEeccCCc--------------hhheeccCCCCcceecc-------CCccceeE
Confidence 5889999999999999999999999999998743 44567999999999999 67777999
Q ss_pred EEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCe
Q 021036 152 TGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNK 231 (318)
Q Consensus 152 s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~ 231 (318)
+++.|..|++||.++++++.++..|.. .|..+.|+ +++++|++++.|..+++| |+++.+
T Consensus 239 sgskDnlVKlWDprSg~cl~tlh~HKn--------------tVl~~~f~-----~n~N~Llt~skD~~~kv~--DiR~mk 297 (464)
T KOG0284|consen 239 SGSKDNLVKLWDPRSGSCLATLHGHKN--------------TVLAVKFN-----PNGNWLLTGSKDQSCKVF--DIRTMK 297 (464)
T ss_pred EccCCceeEeecCCCcchhhhhhhccc--------------eEEEEEEc-----CCCCeeEEccCCceEEEE--ehhHhH
Confidence 999999999999999999998877665 89999999 999999999999999999 555444
Q ss_pred eeEeeeeecccCceeEEEEcCC-CCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCC
Q 021036 232 FDKVGSYNAHDQVVTGLAWAFD-GCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGN 310 (318)
Q Consensus 232 ~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~ 310 (318)
.+..+++|...|+++.|+|- ..+|.+|+.||.|..|.+...+...... ..|...|++++|+|=|
T Consensus 298 --El~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~-------------~AHd~~iwsl~~hPlG 362 (464)
T KOG0284|consen 298 --ELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIP-------------PAHDGEIWSLAYHPLG 362 (464)
T ss_pred --HHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCC-------------cccccceeeeeccccc
Confidence 77889999999999999995 5588999999999999987333222111 2366799999999999
Q ss_pred cEEEEEe
Q 021036 311 LVVAMVQ 317 (318)
Q Consensus 311 ~~l~~~~ 317 (318)
-+||+|.
T Consensus 363 hil~tgs 369 (464)
T KOG0284|consen 363 HILATGS 369 (464)
T ss_pred eeEeecC
Confidence 9999974
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=190.96 Aligned_cols=234 Identities=19% Similarity=0.274 Sum_probs=180.3
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCc
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGK 95 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~ 95 (318)
+..-+++|+.|..|.+|++..... -.. .+.+|.++|..+.+.++++.|++++.|.+
T Consensus 58 ~gs~~aSgG~Dr~I~LWnv~gdce-N~~-----------------------~lkgHsgAVM~l~~~~d~s~i~S~gtDk~ 113 (338)
T KOG0265|consen 58 DGSCFASGGSDRAIVLWNVYGDCE-NFW-----------------------VLKGHSGAVMELHGMRDGSHILSCGTDKT 113 (338)
T ss_pred CCCeEeecCCcceEEEEecccccc-cee-----------------------eeccccceeEeeeeccCCCEEEEecCCce
Confidence 555679999999999998754321 111 11235555555555555599999999999
Q ss_pred EEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecc
Q 021036 96 VSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEA 175 (318)
Q Consensus 96 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 175 (318)
|+.||.++|+ .++.+++|..-|+++.- . .-+..++.+++.|+++++||+++...++++..
T Consensus 114 v~~wD~~tG~--------------~~rk~k~h~~~vNs~~p--~----rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~ 173 (338)
T KOG0265|consen 114 VRGWDAETGK--------------RIRKHKGHTSFVNSLDP--S----RRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN 173 (338)
T ss_pred EEEEecccce--------------eeehhccccceeeecCc--c----ccCCeEEEecCCCceEEEEeecccchhhcccc
Confidence 9999999954 66889999999999874 2 33446788889999999999999888877753
Q ss_pred cccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCC
Q 021036 176 HCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGC 255 (318)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 255 (318)
.. +++++.|. .++..+.+|+-|+.|++| |++... ..+.+.||..+|+.+..+|+|.
T Consensus 174 ky---------------qltAv~f~-----d~s~qv~sggIdn~ikvW--d~r~~d--~~~~lsGh~DtIt~lsls~~gs 229 (338)
T KOG0265|consen 174 KY---------------QLTAVGFK-----DTSDQVISGGIDNDIKVW--DLRKND--GLYTLSGHADTITGLSLSRYGS 229 (338)
T ss_pred ce---------------eEEEEEec-----ccccceeeccccCceeee--ccccCc--ceEEeecccCceeeEEeccCCC
Confidence 33 78899998 889999999999999999 666665 6778999999999999999999
Q ss_pred EEEEecCCCcEEEEEecC----Cc-ee--------------eeecCCCCCCcc-ccc----------------cCCCcce
Q 021036 256 CLYSCSQDNFVRSWIFHG----NS-LS--------------QVSIPTNTPGLQ-SCT----------------DLPDAFV 299 (318)
Q Consensus 256 ~l~s~~~d~~v~iwd~~~----~~-~~--------------~~~~~~~~~~~~-~~~----------------~~~~h~~ 299 (318)
++.+-+.|.++++||++. .. +. ...+.++...+. ++. .+++|.+
T Consensus 230 ~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~g 309 (338)
T KOG0265|consen 230 FLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYG 309 (338)
T ss_pred ccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcce
Confidence 999999999999999974 11 11 112233332222 221 2569999
Q ss_pred eeeEEEEcCCCcEEEEEe
Q 021036 300 SCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 300 ~v~~v~~sp~~~~l~~~~ 317 (318)
.|+.++|+|...+|.+++
T Consensus 310 svn~~~Fhp~e~iils~~ 327 (338)
T KOG0265|consen 310 SVNEVDFHPTEPIILSCS 327 (338)
T ss_pred eEEEeeecCCCcEEEEec
Confidence 999999999999998875
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-29 Score=215.15 Aligned_cols=231 Identities=21% Similarity=0.258 Sum_probs=184.2
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEE
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVS 97 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~ 97 (318)
-.++|+|.|+++++|.++.+.+.........+|...+. +++.+..+ ..+|++++.|++++
T Consensus 378 ~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svg---ava~~~~~-----------------asffvsvS~D~tlK 437 (775)
T KOG0319|consen 378 DLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVG---AVAGSKLG-----------------ASFFVSVSQDCTLK 437 (775)
T ss_pred cEEEEecCCceEEEEEecCCcchhhhhhhhcccccccc---eeeecccC-----------------ccEEEEecCCceEE
Confidence 46899999999999999665544433333334444422 24444333 47999999999999
Q ss_pred EEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccc
Q 021036 98 LWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHC 177 (318)
Q Consensus 98 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 177 (318)
+|++...+. ..++...........|...|+|+++ +|+..+++|||.|++.+||++.+.....++.+|.
T Consensus 438 ~W~l~~s~~-----~~~~~~~~~~~t~~aHdKdIN~Vai-------a~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~ 505 (775)
T KOG0319|consen 438 LWDLPKSKE-----TAFPIVLTCRYTERAHDKDINCVAI-------APNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHT 505 (775)
T ss_pred EecCCCccc-----ccccceehhhHHHHhhcccccceEe-------cCCCceEEecccccceeeecccCceEEEEeeCCc
Confidence 999976221 0011111111234579999999999 8999999999999999999999888888887666
Q ss_pred cccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEE
Q 021036 178 VPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCL 257 (318)
Q Consensus 178 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 257 (318)
. .|.++.|+ |..++++++|.|.+|++| .+.+.. ++.++.||+..|..+.|-.+|+.|
T Consensus 506 R--------------Gvw~V~Fs-----~~dq~laT~SgD~TvKIW--~is~fS--ClkT~eGH~~aVlra~F~~~~~ql 562 (775)
T KOG0319|consen 506 R--------------GVWCVSFS-----KNDQLLATCSGDKTVKIW--SISTFS--CLKTFEGHTSAVLRASFIRNGKQL 562 (775)
T ss_pred c--------------ceEEEEec-----cccceeEeccCCceEEEE--Eeccce--eeeeecCccceeEeeeeeeCCcEE
Confidence 4 89999999 999999999999999999 555655 889999999999999999999999
Q ss_pred EEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 258 YSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 258 ~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
++++.||-|++|+++++.+.. ++..|.++|++++-+|...+++||.
T Consensus 563 iS~~adGliKlWnikt~eC~~--------------tlD~H~DrvWaL~~~~~~~~~~tgg 608 (775)
T KOG0319|consen 563 ISAGADGLIKLWNIKTNECEM--------------TLDAHNDRVWALSVSPLLDMFVTGG 608 (775)
T ss_pred EeccCCCcEEEEeccchhhhh--------------hhhhccceeEEEeecCccceeEecC
Confidence 999999999999999977663 5667888999999999999998774
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-30 Score=207.69 Aligned_cols=190 Identities=18% Similarity=0.276 Sum_probs=163.1
Q ss_pred CCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeecccc-ccEEEEEeeeecCCCCCC
Q 021036 68 LSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHN-SWITSISLAVLSSDSSNP 146 (318)
Q Consensus 68 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~p~~~~~~~~ 146 (318)
++.|..+|.++.+++++.++++|+.+|.|++|+.+- ..++.+++|. ..|++++| +++
T Consensus 134 lQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm---------------nnVk~~~ahh~eaIRdlaf-------Spn 191 (464)
T KOG0284|consen 134 LQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM---------------NNVKIIQAHHAEAIRDLAF-------SPN 191 (464)
T ss_pred hhhhcccceeEEEccCCCEEEEcCCCceEEecccch---------------hhhHHhhHhhhhhhheecc-------CCC
Confidence 668999999999999999999999999999999874 3445566655 89999999 888
Q ss_pred CcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeec
Q 021036 147 QVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCD 226 (318)
Q Consensus 147 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~ 226 (318)
...|++++.||+|+|||....+....+.+| ...|.++.|+ |...++++|+.|..|++| |
T Consensus 192 DskF~t~SdDg~ikiWdf~~~kee~vL~GH--------------gwdVksvdWH-----P~kgLiasgskDnlVKlW--D 250 (464)
T KOG0284|consen 192 DSKFLTCSDDGTIKIWDFRMPKEERVLRGH--------------GWDVKSVDWH-----PTKGLIASGSKDNLVKLW--D 250 (464)
T ss_pred CceeEEecCCCeEEEEeccCCchhheeccC--------------CCCcceeccC-----CccceeEEccCCceeEee--c
Confidence 889999999999999999987766666544 4489999999 999999999999999999 8
Q ss_pred cCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEE
Q 021036 227 ISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAV 306 (318)
Q Consensus 227 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 306 (318)
.+++. ++.++.+|...|..+.|+|++.+|+++|.|..++++|+++-+... .+++|...|++++|
T Consensus 251 prSg~--cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~--------------~~r~Hkkdv~~~~W 314 (464)
T KOG0284|consen 251 PRSGS--CLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELF--------------TYRGHKKDVTSLTW 314 (464)
T ss_pred CCCcc--hhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHH--------------Hhhcchhhheeecc
Confidence 88887 788999999999999999999999999999999999999533221 34456778999999
Q ss_pred cC-CCcEEEEE
Q 021036 307 SP-GNLVVAMV 316 (318)
Q Consensus 307 sp-~~~~l~~~ 316 (318)
+| ...++.+|
T Consensus 315 hP~~~~lftsg 325 (464)
T KOG0284|consen 315 HPLNESLFTSG 325 (464)
T ss_pred ccccccceeec
Confidence 99 44555554
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-28 Score=186.31 Aligned_cols=228 Identities=21% Similarity=0.239 Sum_probs=171.9
Q ss_pred CCCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEec
Q 021036 12 MKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGG 91 (318)
Q Consensus 12 ~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~ 91 (318)
+.+...+.+++++.||++++||+..... +....+. |+..+.. +.|++.. +..+++++
T Consensus 68 Wse~~e~~~~~a~GDGSLrl~d~~~~s~-Pi~~~kE--H~~EV~S---vdwn~~~-----------------r~~~ltsS 124 (311)
T KOG0277|consen 68 WSENHENQVIAASGDGSLRLFDLTMPSK-PIHKFKE--HKREVYS---VDWNTVR-----------------RRIFLTSS 124 (311)
T ss_pred ecCCCcceEEEEecCceEEEeccCCCCc-chhHHHh--hhhheEE---ecccccc-----------------ceeEEeec
Confidence 4567788899999999999999543221 2221111 4444333 7777766 57788889
Q ss_pred CCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceee
Q 021036 92 RSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQK 171 (318)
Q Consensus 92 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~ 171 (318)
-||+|++|+...+ +.++++.+|...|....|+ +..+++++++|.|+++++||++......
T Consensus 125 WD~TiKLW~~~r~--------------~Sv~Tf~gh~~~Iy~a~~s------p~~~nlfas~Sgd~~l~lwdvr~~gk~~ 184 (311)
T KOG0277|consen 125 WDGTIKLWDPNRP--------------NSVQTFNGHNSCIYQAAFS------PHIPNLFASASGDGTLRLWDVRSPGKFM 184 (311)
T ss_pred cCCceEeecCCCC--------------cceEeecCCccEEEEEecC------CCCCCeEEEccCCceEEEEEecCCCcee
Confidence 9999999999874 4678899999999999994 3455689999999999999998643333
Q ss_pred eecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEc
Q 021036 172 SAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWA 251 (318)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 251 (318)
.+.. |...+.++.|+. -+..++++|+.|+.|+.|| ++.-+ .++.++.+|.-.|..++||
T Consensus 185 ~i~a--------------h~~Eil~cdw~k----y~~~vl~Tg~vd~~vr~wD--ir~~r-~pl~eL~gh~~AVRkvk~S 243 (311)
T KOG0277|consen 185 SIEA--------------HNSEILCCDWSK----YNHNVLATGGVDNLVRGWD--IRNLR-TPLFELNGHGLAVRKVKFS 243 (311)
T ss_pred EEEe--------------ccceeEeecccc----cCCcEEEecCCCceEEEEe--hhhcc-ccceeecCCceEEEEEecC
Confidence 3544 444788888882 5678999999999999994 55544 3788899999999999999
Q ss_pred CCC-CEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcC-CCcEEEEE
Q 021036 252 FDG-CCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSP-GNLVVAMV 316 (318)
Q Consensus 252 ~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~~~ 316 (318)
|.. ..|++++.|-+++|||...+.-... ...-|+.-+.++.|++ ++.++|++
T Consensus 244 ph~~~lLaSasYDmT~riw~~~~~ds~~e-------------~~~~HtEFv~g~Dws~~~~~~vAs~ 297 (311)
T KOG0277|consen 244 PHHASLLASASYDMTVRIWDPERQDSAIE-------------TVDHHTEFVCGLDWSLFDPGQVAST 297 (311)
T ss_pred cchhhHhhhccccceEEecccccchhhhh-------------hhhccceEEeccccccccCceeeec
Confidence 974 5899999999999999864322111 1112666889999998 66677764
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-28 Score=195.59 Aligned_cols=194 Identities=18% Similarity=0.246 Sum_probs=168.9
Q ss_pred cccCCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCC
Q 021036 65 VLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSS 144 (318)
Q Consensus 65 ~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 144 (318)
...+.+|.+=|.|+++.|..++|++|+.|++|+|||+.++ ++..++.+|-..|..+++ +
T Consensus 144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg--------------~LkltltGhi~~vr~vav-------S 202 (460)
T KOG0285|consen 144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATG--------------QLKLTLTGHIETVRGVAV-------S 202 (460)
T ss_pred hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccC--------------eEEEeecchhheeeeeee-------c
Confidence 3447789999999999999999999999999999999994 577789999999999999 7
Q ss_pred CCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEee
Q 021036 145 NPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWK 224 (318)
Q Consensus 145 ~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~ 224 (318)
+...||++++.|+.|+.||++..+.+....+|-. .|++++.. |.-+.|++|+.|.++++|
T Consensus 203 ~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS--------------~V~~L~lh-----PTldvl~t~grDst~RvW- 262 (460)
T KOG0285|consen 203 KRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLS--------------GVYCLDLH-----PTLDVLVTGGRDSTIRVW- 262 (460)
T ss_pred ccCceEEEecCCCeeEEEechhhhhHHHhccccc--------------eeEEEecc-----ccceeEEecCCcceEEEe-
Confidence 7778999999999999999999888877766554 89999999 999999999999999999
Q ss_pred eccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEE
Q 021036 225 CDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGM 304 (318)
Q Consensus 225 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v 304 (318)
|+++.. .+..+.+|..+|..+.+.|....+++|+.|++|++||++.++-... +..|...|+++
T Consensus 263 -DiRtr~--~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~t--------------lt~hkksvral 325 (460)
T KOG0285|consen 263 -DIRTRA--SVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMIT--------------LTHHKKSVRAL 325 (460)
T ss_pred -eecccc--eEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEe--------------eecccceeeEE
Confidence 566655 7889999999999999999888899999999999999998765432 22244578888
Q ss_pred EEcCCCcEEEEE
Q 021036 305 AVSPGNLVVAMV 316 (318)
Q Consensus 305 ~~sp~~~~l~~~ 316 (318)
+.+|....+|++
T Consensus 326 ~lhP~e~~fASa 337 (460)
T KOG0285|consen 326 CLHPKENLFASA 337 (460)
T ss_pred ecCCchhhhhcc
Confidence 888888777765
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-27 Score=209.00 Aligned_cols=220 Identities=24% Similarity=0.280 Sum_probs=172.4
Q ss_pred eEEeeCCCceeEeecCCCCC--CCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEE
Q 021036 20 TVAASKSKGNSITKIPSNCC--LPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVS 97 (318)
Q Consensus 20 ~~t~s~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~ 97 (318)
+++++.|+.+++|+....+. +.. +.+|...|.+++|+++++++++++.|++|+
T Consensus 174 l~~~~~~~~i~~~~~~~~~~~~~~~-------------------------l~~h~~~v~~~~fs~d~~~l~s~s~D~tir 228 (456)
T KOG0266|consen 174 LAAASSDGLIRIWKLEGIKSNLLRE-------------------------LSGHTRGVSDVAFSPDGSYLLSGSDDKTLR 228 (456)
T ss_pred EEEccCCCcEEEeecccccchhhcc-------------------------ccccccceeeeEECCCCcEEEEecCCceEE
Confidence 88899999999999966553 111 123444444444455559999999999999
Q ss_pred EEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccc
Q 021036 98 LWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHC 177 (318)
Q Consensus 98 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 177 (318)
|||+..+ ...++.+++|...|++++| ++.++++++|+.|++|++||++++++...+..|.
T Consensus 229 iwd~~~~-------------~~~~~~l~gH~~~v~~~~f-------~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs 288 (456)
T KOG0266|consen 229 IWDLKDD-------------GRNLKTLKGHSTYVTSVAF-------SPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHS 288 (456)
T ss_pred EeeccCC-------------CeEEEEecCCCCceEEEEe-------cCCCCEEEEecCCCcEEEEeccCCeEEEeeeccC
Confidence 9999442 3577899999999999999 8889999999999999999999999988887666
Q ss_pred cccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCc--eeEEEEcCCCC
Q 021036 178 VPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQV--VTGLAWAFDGC 255 (318)
Q Consensus 178 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~ 255 (318)
. +|++++|+ +++.+|++++.|+.|++| |..++....+..+.++... ++.+.|+|++.
T Consensus 289 ~--------------~is~~~f~-----~d~~~l~s~s~d~~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~ 347 (456)
T KOG0266|consen 289 D--------------GISGLAFS-----PDGNLLVSASYDGTIRVW--DLETGSKLCLKLLSGAENSAPVTSVQFSPNGK 347 (456)
T ss_pred C--------------ceEEEEEC-----CCCCEEEEcCCCccEEEE--ECCCCceeeeecccCCCCCCceeEEEECCCCc
Confidence 4 89999999 999999999999999999 5556552224455555544 99999999999
Q ss_pred EEEEecCCCcEEEEEecCCcee-eeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 256 CLYSCSQDNFVRSWIFHGNSLS-QVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 256 ~l~s~~~d~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
+++++..|+.+++||+..+... ....+.... ..+.+...++.++++.+|.
T Consensus 348 ~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~i~sg~ 398 (456)
T KOG0266|consen 348 YLLSASLDRTLKLWDLRSGKSVGTYTGHSNLV------------RCIFSPTLSTGGKLIYSGS 398 (456)
T ss_pred EEEEecCCCeEEEEEccCCcceeeecccCCcc------------eeEecccccCCCCeEEEEe
Confidence 9999999999999999975543 333333310 2455666677888888764
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.3e-28 Score=191.65 Aligned_cols=257 Identities=16% Similarity=0.174 Sum_probs=188.2
Q ss_pred ccceEEeeCCCceeEeecCCCCCCCceecchhcccccc-----------------ccceeeeeccccc-------CCCCc
Q 021036 17 THPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAM-----------------LHSLAVAWSPVLR-------LSSKK 72 (318)
Q Consensus 17 ~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~w~p~~~-------~~~~~ 72 (318)
...+++|+.||++|+||... ++...+..+.-+.+... ......+|++... -++|.
T Consensus 115 ~~~IltgsYDg~~riWd~~G-k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk 193 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLKG-KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHK 193 (423)
T ss_pred CceEEEeecCCeeEEEecCC-ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccc
Confidence 34589999999999999864 33333332211111000 0111345555432 33899
Q ss_pred ccccccCCCCCccEEEEecCCCcEEEEEccCCccccccc-----------cccCCceeEEeeeccccccEEEEEeeeecC
Q 021036 73 YPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVED-----------CKVPTTAVLIGLFQAHNSWITSISLAVLSS 141 (318)
Q Consensus 73 ~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~ 141 (318)
.+|-++.+.+++..+++|+.|..|+||+.+....-..+. -.......++..+.+|..+|.++.|
T Consensus 194 ~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w----- 268 (423)
T KOG0313|consen 194 RSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVW----- 268 (423)
T ss_pred cceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEE-----
Confidence 999999999999999999999999999944322111111 0112234567788999999999999
Q ss_pred CCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEE
Q 021036 142 DSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFD 221 (318)
Q Consensus 142 ~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~ 221 (318)
++ ...+++++.|.+|+.||+.++.....+.... .+.++.++ |..++|++|+.|..|+
T Consensus 269 --~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k---------------sl~~i~~~-----~~~~Ll~~gssdr~ir 325 (423)
T KOG0313|consen 269 --SD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK---------------SLNCISYS-----PLSKLLASGSSDRHIR 325 (423)
T ss_pred --cC-CCceEeecccceEEEEEeecccceeeeecCc---------------ceeEeecc-----cccceeeecCCCCcee
Confidence 44 5579999999999999999998887766544 78899999 8999999999999999
Q ss_pred EeeeccCCCeeeEeeeeecccCceeEEEEcCCCC-EEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCccee
Q 021036 222 LWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGC-CLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVS 300 (318)
Q Consensus 222 vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 300 (318)
+||-....+.. ...++.+|.+.|.++.|+|... .|++++.|+++++||+++..... .++.+|...
T Consensus 326 l~DPR~~~gs~-v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~pl-------------ydI~~h~DK 391 (423)
T KOG0313|consen 326 LWDPRTGDGSV-VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPL-------------YDIAGHNDK 391 (423)
T ss_pred ecCCCCCCCce-eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcc-------------eeeccCCce
Confidence 99544444443 5667889999999999999765 68899999999999999754221 134456679
Q ss_pred eeEEEEcCCCcEEEEEe
Q 021036 301 CLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 301 v~~v~~sp~~~~l~~~~ 317 (318)
|.++.|+. +.+|++|.
T Consensus 392 vl~vdW~~-~~~IvSGG 407 (423)
T KOG0313|consen 392 VLSVDWNE-GGLIVSGG 407 (423)
T ss_pred EEEEeccC-CceEEecc
Confidence 99999985 45777764
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-28 Score=204.94 Aligned_cols=191 Identities=16% Similarity=0.203 Sum_probs=165.5
Q ss_pred eEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEEE
Q 021036 20 TVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLW 99 (318)
Q Consensus 20 ~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw 99 (318)
+++||.|..||++++++++.+..+.+ |.+- +.+++-+|.. .+++++++|-.|++|
T Consensus 70 iv~GsDD~~IrVfnynt~ekV~~FeA----H~Dy---IR~iavHPt~------------------P~vLtsSDDm~iKlW 124 (794)
T KOG0276|consen 70 IVTGSDDMQIRVFNYNTGEKVKTFEA----HSDY---IRSIAVHPTL------------------PYVLTSSDDMTIKLW 124 (794)
T ss_pred EEEecCCceEEEEecccceeeEEeec----cccc---eeeeeecCCC------------------CeEEecCCccEEEEe
Confidence 69999999999999999998888776 5554 4557777777 999999999999999
Q ss_pred EccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccc
Q 021036 100 RICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVP 179 (318)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~ 179 (318)
|.+.. ....+++.+|...|.+++| ++.+.+.|++++-|++|++|.+.+..+..++.+|+.
T Consensus 125 ~we~~-------------wa~~qtfeGH~HyVMqv~f------nPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHek- 184 (794)
T KOG0276|consen 125 DWENE-------------WACEQTFEGHEHYVMQVAF------NPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEK- 184 (794)
T ss_pred eccCc-------------eeeeeEEcCcceEEEEEEe------cCCCccceeeeeccccEEEEEcCCCCCceeeecccc-
Confidence 99864 4577899999999999999 345567899999999999999999888888877765
Q ss_pred cccceeeeeecccceeEEEEeeccCCCC--ceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEE
Q 021036 180 FSLLKEVVTVNTVPISVLSLILPVQSPR--LMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCL 257 (318)
Q Consensus 180 ~~~~~~~~~~~~~~v~~l~~~~~~~~~~--~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 257 (318)
.|+++.+- +. ..+|++|+.|.+|++| |.++.. +++++.||...|..+.|+|.-..+
T Consensus 185 -------------GVN~Vdyy-----~~gdkpylIsgaDD~tiKvW--DyQtk~--CV~TLeGHt~Nvs~v~fhp~lpii 242 (794)
T KOG0276|consen 185 -------------GVNCVDYY-----TGGDKPYLISGADDLTIKVW--DYQTKS--CVQTLEGHTNNVSFVFFHPELPII 242 (794)
T ss_pred -------------CcceEEec-----cCCCcceEEecCCCceEEEe--ecchHH--HHHHhhcccccceEEEecCCCcEE
Confidence 89999997 43 3599999999999999 556666 789999999999999999999999
Q ss_pred EEecCCCcEEEEEecCCcee
Q 021036 258 YSCSQDNFVRSWIFHGNSLS 277 (318)
Q Consensus 258 ~s~~~d~~v~iwd~~~~~~~ 277 (318)
++|++||+|+||...+..+.
T Consensus 243 isgsEDGTvriWhs~Ty~lE 262 (794)
T KOG0276|consen 243 ISGSEDGTVRIWNSKTYKLE 262 (794)
T ss_pred EEecCCccEEEecCcceehh
Confidence 99999999999998775443
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-29 Score=199.81 Aligned_cols=187 Identities=16% Similarity=0.301 Sum_probs=148.1
Q ss_pred CCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCC
Q 021036 68 LSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQ 147 (318)
Q Consensus 68 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~ 147 (318)
+..|..+|..+.|+. .++++++.|.++.+||+..+.. ....+.+.+|.+.|+.+.| +.
T Consensus 273 lihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~-----------it~rrVLvGHrAaVNvVdf---------d~ 330 (499)
T KOG0281|consen 273 LIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTD-----------ITLRRVLVGHRAAVNVVDF---------DD 330 (499)
T ss_pred HhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchH-----------HHHHHHHhhhhhheeeecc---------cc
Confidence 334555666666654 7999999999999999987542 2344567899999999999 45
Q ss_pred cEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeecc
Q 021036 148 VLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDI 227 (318)
Q Consensus 148 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 227 (318)
+++++++.|.+|++|++.+++.+.++.+|.. .|-|+.+. ++++++|+.|.+|++| |.
T Consensus 331 kyIVsASgDRTikvW~~st~efvRtl~gHkR--------------GIAClQYr-------~rlvVSGSSDntIRlw--di 387 (499)
T KOG0281|consen 331 KYIVSASGDRTIKVWSTSTCEFVRTLNGHKR--------------GIACLQYR-------DRLVVSGSSDNTIRLW--DI 387 (499)
T ss_pred ceEEEecCCceEEEEeccceeeehhhhcccc--------------cceehhcc-------CeEEEecCCCceEEEE--ec
Confidence 6999999999999999999999998887664 77777774 8999999999999999 67
Q ss_pred CCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEc
Q 021036 228 SCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVS 307 (318)
Q Consensus 228 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s 307 (318)
..+. ++..++||+.-|.++.|+ .+.+++|+.||+|++||+..+.........- +-..+..|++.|..+.|.
T Consensus 388 ~~G~--cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~-----Cl~~lv~hsgRVFrLQFD 458 (499)
T KOG0281|consen 388 ECGA--CLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTL-----CLRTLVEHSGRVFRLQFD 458 (499)
T ss_pred cccH--HHHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCcccccch-----HHHhhhhccceeEEEeec
Confidence 7777 778899999999999997 5679999999999999998754432111110 223445688889988886
Q ss_pred C
Q 021036 308 P 308 (318)
Q Consensus 308 p 308 (318)
.
T Consensus 459 ~ 459 (499)
T KOG0281|consen 459 E 459 (499)
T ss_pred c
Confidence 3
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-28 Score=204.25 Aligned_cols=230 Identities=15% Similarity=0.203 Sum_probs=190.0
Q ss_pred eeccCcCCCCCccc----eEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCC
Q 021036 6 DFTSNKMKDSNTHP----TVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSS 81 (318)
Q Consensus 6 ~~~~~~~~~~~~~~----~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s 81 (318)
...+.+.+-.+-|| ++++-..|.+.||+.++...+..+.....+ |.++.|-
T Consensus 10 ~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~P-------------------------vRa~kfi 64 (794)
T KOG0276|consen 10 QSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVP-------------------------VRAAKFI 64 (794)
T ss_pred hccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccc-------------------------hhhheee
Confidence 33566677777777 588889999999999999888777654433 3333333
Q ss_pred CCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEE
Q 021036 82 NWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRI 161 (318)
Q Consensus 82 ~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~i 161 (318)
...+++++|++|..|++|+.++ .+.+..|.+|.+.|.+++. +|...+++|+|.|-+|++
T Consensus 65 aRknWiv~GsDD~~IrVfnynt--------------~ekV~~FeAH~DyIR~iav-------HPt~P~vLtsSDDm~iKl 123 (794)
T KOG0276|consen 65 ARKNWIVTGSDDMQIRVFNYNT--------------GEKVKTFEAHSDYIRSIAV-------HPTLPYVLTSSDDMTIKL 123 (794)
T ss_pred eccceEEEecCCceEEEEeccc--------------ceeeEEeeccccceeeeee-------cCCCCeEEecCCccEEEE
Confidence 3359999999999999999999 4578899999999999999 677779999999999999
Q ss_pred EECCCc-ceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeec
Q 021036 162 WDGYIQ-ELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNA 240 (318)
Q Consensus 162 wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 240 (318)
||.+.+ .+.+++.+|+ +-|.+++|+ |.|.+.|++++-|++|++|. +.+.. +..++++
T Consensus 124 W~we~~wa~~qtfeGH~--------------HyVMqv~fn----PkD~ntFaS~sLDrTVKVWs--lgs~~--~nfTl~g 181 (794)
T KOG0276|consen 124 WDWENEWACEQTFEGHE--------------HYVMQVAFN----PKDPNTFASASLDRTVKVWS--LGSPH--PNFTLEG 181 (794)
T ss_pred eeccCceeeeeEEcCcc--------------eEEEEEEec----CCCccceeeeeccccEEEEE--cCCCC--Cceeeec
Confidence 999876 4556666554 489999999 57889999999999999995 44443 6778999
Q ss_pred ccCceeEEEEcCCC--CEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 241 HDQVVTGLAWAFDG--CCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 241 h~~~v~~~~~~~~~--~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
|...|.++.|-+.| .+|++|+.|.+|+|||.++..+.+ ++.||...|..+.|+|.-.++++|.
T Consensus 182 HekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~--------------TLeGHt~Nvs~v~fhp~lpiiisgs 246 (794)
T KOG0276|consen 182 HEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQ--------------TLEGHTNNVSFVFFHPELPIIISGS 246 (794)
T ss_pred cccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHH--------------HhhcccccceEEEecCCCcEEEEec
Confidence 99999999998855 599999999999999999877664 5667778999999999999999884
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.9e-28 Score=209.86 Aligned_cols=249 Identities=16% Similarity=0.192 Sum_probs=197.2
Q ss_pred eEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeeccccc------------------------CCCCcccc
Q 021036 20 TVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLR------------------------LSSKKYPV 75 (318)
Q Consensus 20 ~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~------------------------~~~~~~~v 75 (318)
++++-.+|.|++||+.-+.++..+.. |.+. +..+.|+|... +.+|.--|
T Consensus 24 ILtslHsG~IQlWDYRM~tli~rFde----HdGp---VRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYV 96 (1202)
T KOG0292|consen 24 ILTSLHSGVIQLWDYRMGTLIDRFDE----HDGP---VRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYV 96 (1202)
T ss_pred EEEeecCceeeeehhhhhhHHhhhhc----cCCc---cceeeecCCCCeEEecCCccEEEEEecccceehhhhcccccee
Confidence 68888999999999999988887766 3333 22255555432 56788889
Q ss_pred cccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeC
Q 021036 76 PQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSS 155 (318)
Q Consensus 76 ~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~ 155 (318)
..+.|.+...+++++++|.+|+||+..+. +.+..+.+|...|.|..| .|..++++++|-
T Consensus 97 Rt~~FHheyPWIlSASDDQTIrIWNwqsr--------------~~iavltGHnHYVMcAqF-------hptEDlIVSaSL 155 (1202)
T KOG0292|consen 97 RTVFFHHEYPWILSASDDQTIRIWNWQSR--------------KCIAVLTGHNHYVMCAQF-------HPTEDLIVSASL 155 (1202)
T ss_pred EEeeccCCCceEEEccCCCeEEEEeccCC--------------ceEEEEecCceEEEeecc-------CCccceEEEecc
Confidence 99999999999999999999999999984 467889999999999999 788889999999
Q ss_pred CCcEEEEECCCcceeeeec--------cccc-------ccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcE
Q 021036 156 DGSVRIWDGYIQELQKSAE--------AHCV-------PFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSF 220 (318)
Q Consensus 156 d~~v~iwd~~~~~~~~~~~--------~~~~-------~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i 220 (318)
|.+|++||+..-+....-. +... .-.+++.+..+|+..|+-++|+ |.-.+|++|+.|..|
T Consensus 156 DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfh-----pTlpliVSG~DDRqV 230 (1202)
T KOG0292|consen 156 DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFH-----PTLPLIVSGADDRQV 230 (1202)
T ss_pred cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEec-----CCcceEEecCCccee
Confidence 9999999987533222111 1111 1123457889999999999999 999999999999999
Q ss_pred EEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCccee
Q 021036 221 DLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVS 300 (318)
Q Consensus 221 ~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 300 (318)
++|.++.. ..| .+.+..+|.+.|+++-|+|....+++.|+|++|++||+..+...+..-..+ ++
T Consensus 231 KlWrmnet-KaW-EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrren--------------dR 294 (1202)
T KOG0292|consen 231 KLWRMNET-KAW-EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRREN--------------DR 294 (1202)
T ss_pred eEEEeccc-cce-eehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccC--------------Ce
Confidence 99955432 233 677888999999999999999999999999999999998766543222221 36
Q ss_pred eeEEEEcCCCcEEEEEe
Q 021036 301 CLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 301 v~~v~~sp~~~~l~~~~ 317 (318)
.+.++-+|...++|.||
T Consensus 295 FW~laahP~lNLfAAgH 311 (1202)
T KOG0292|consen 295 FWILAAHPELNLFAAGH 311 (1202)
T ss_pred EEEEEecCCcceeeeec
Confidence 78888888888888887
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=208.59 Aligned_cols=192 Identities=23% Similarity=0.338 Sum_probs=164.5
Q ss_pred CcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEE
Q 021036 71 KKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLL 150 (318)
Q Consensus 71 ~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l 150 (318)
+...|.++.|+++|+.+++++.|+.+++|+....+. ...+.+.+|...|++++| +++++++
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~------------~~~~~l~~h~~~v~~~~f-------s~d~~~l 218 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS------------NLLRELSGHTRGVSDVAF-------SPDGSYL 218 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc------------hhhccccccccceeeeEE-------CCCCcEE
Confidence 367899999999999999999999999999965431 145566899999999999 9999999
Q ss_pred EEEeCCCcEEEEEC-CCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCC
Q 021036 151 VTGSSDGSVRIWDG-YIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISC 229 (318)
Q Consensus 151 ~s~~~d~~v~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~ 229 (318)
++++.|+++++||+ ..+..++++.+|.. .|++++|+ |+++++++|+.|++|++| +.++
T Consensus 219 ~s~s~D~tiriwd~~~~~~~~~~l~gH~~--------------~v~~~~f~-----p~g~~i~Sgs~D~tvriW--d~~~ 277 (456)
T KOG0266|consen 219 LSGSDDKTLRIWDLKDDGRNLKTLKGHST--------------YVTSVAFS-----PDGNLLVSGSDDGTVRIW--DVRT 277 (456)
T ss_pred EEecCCceEEEeeccCCCeEEEEecCCCC--------------ceEEEEec-----CCCCEEEEecCCCcEEEE--eccC
Confidence 99999999999999 45577788876665 89999999 999999999999999999 6666
Q ss_pred CeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCcee---eeecCCCCCCccccccCCCcceeeeEEEE
Q 021036 230 NKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLS---QVSIPTNTPGLQSCTDLPDAFVSCLGMAV 306 (318)
Q Consensus 230 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 306 (318)
++ ++..+.+|.+.|++++|++++++|++++.|+.|++||+.++... .+..... .. +++.+.|
T Consensus 278 ~~--~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~------------~~-~~~~~~f 342 (456)
T KOG0266|consen 278 GE--CVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAEN------------SA-PVTSVQF 342 (456)
T ss_pred Ce--EEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCC------------CC-ceeEEEE
Confidence 66 78889999999999999999999999999999999999998743 2222221 11 6899999
Q ss_pred cCCCcEEEEEe
Q 021036 307 SPGNLVVAMVQ 317 (318)
Q Consensus 307 sp~~~~l~~~~ 317 (318)
+|++++++++.
T Consensus 343 sp~~~~ll~~~ 353 (456)
T KOG0266|consen 343 SPNGKYLLSAS 353 (456)
T ss_pred CCCCcEEEEec
Confidence 99999999873
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-26 Score=177.88 Aligned_cols=184 Identities=20% Similarity=0.240 Sum_probs=151.0
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeee-ccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEE
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLF-QAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIW 162 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iw 162 (318)
|.+||+|+.|..||||+...+.. ......+ .+|...|++++| +|.|++|+++|.|.++.||
T Consensus 27 g~ilAscg~Dk~vriw~~~~~~s-----------~~ck~vld~~hkrsVRsvAw-------sp~g~~La~aSFD~t~~Iw 88 (312)
T KOG0645|consen 27 GVILASCGTDKAVRIWSTSSGDS-----------WTCKTVLDDGHKRSVRSVAW-------SPHGRYLASASFDATVVIW 88 (312)
T ss_pred ceEEEeecCCceEEEEecCCCCc-----------EEEEEeccccchheeeeeee-------cCCCcEEEEeeccceEEEe
Confidence 48999999999999999985432 1222223 479999999999 9999999999999999999
Q ss_pred ECCCc--ceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeec
Q 021036 163 DGYIQ--ELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNA 240 (318)
Q Consensus 163 d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 240 (318)
.-..+ +++.++.+|+. .|.+++|+ ++|++||+++.|..|-+|..+ +..+++.+..++.
T Consensus 89 ~k~~~efecv~~lEGHEn--------------EVK~Vaws-----~sG~~LATCSRDKSVWiWe~d-eddEfec~aVL~~ 148 (312)
T KOG0645|consen 89 KKEDGEFECVATLEGHEN--------------EVKCVAWS-----ASGNYLATCSRDKSVWIWEID-EDDEFECIAVLQE 148 (312)
T ss_pred ecCCCceeEEeeeecccc--------------ceeEEEEc-----CCCCEEEEeeCCCeEEEEEec-CCCcEEEEeeecc
Confidence 86644 45555665554 89999999 999999999999999999876 5677889999999
Q ss_pred ccCceeEEEEcCCCCEEEEecCCCcEEEEEec-CCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 241 HDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFH-GNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 241 h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
|.+.|-.+.|+|...+|++++.|.+|++|.-. .+..... ..+.+|...|.+++|+|.|..|+++.
T Consensus 149 HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~------------~tl~g~~~TVW~~~F~~~G~rl~s~s 214 (312)
T KOG0645|consen 149 HTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECV------------QTLDGHENTVWSLAFDNIGSRLVSCS 214 (312)
T ss_pred ccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEE------------EEecCccceEEEEEecCCCceEEEec
Confidence 99999999999999999999999999999876 3322211 23445667899999999998887763
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.8e-28 Score=182.12 Aligned_cols=239 Identities=20% Similarity=0.213 Sum_probs=171.2
Q ss_pred CCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCC--CccEEEEe
Q 021036 13 KDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSN--WFSILAVG 90 (318)
Q Consensus 13 ~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~--~~~~l~~g 90 (318)
-+.....++|+|.|++|+|+.+..+.....+. .|.+|.+||..+++.. .|.+||++
T Consensus 19 lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~----------------------~L~Gh~GPVwqv~wahPk~G~iLASc 76 (299)
T KOG1332|consen 19 LDYYGKRLATCSSDGTVKIFEVRNNGQSKLLA----------------------ELTGHSGPVWKVAWAHPKFGTILASC 76 (299)
T ss_pred hhhhcceeeeecCCccEEEEEEcCCCCceeee----------------------EecCCCCCeeEEeecccccCcEeeEe
Confidence 34556789999999999999998765422211 2333444444444433 37999999
Q ss_pred cCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCccee
Q 021036 91 GRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQ 170 (318)
Q Consensus 91 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 170 (318)
+.||.|.||.-++++ .........|...|++++|.|+ .-|-.|++++.||.|.+.+.+....-
T Consensus 77 sYDgkVIiWke~~g~------------w~k~~e~~~h~~SVNsV~waph-----eygl~LacasSDG~vsvl~~~~~g~w 139 (299)
T KOG1332|consen 77 SYDGKVIIWKEENGR------------WTKAYEHAAHSASVNSVAWAPH-----EYGLLLACASSDGKVSVLTYDSSGGW 139 (299)
T ss_pred ecCceEEEEecCCCc------------hhhhhhhhhhcccceeeccccc-----ccceEEEEeeCCCcEEEEEEcCCCCc
Confidence 999999999999875 3455667889999999999553 34568999999999999998754110
Q ss_pred eeecccccccccceeeeeecccceeEEEEeeccCC-------C--CceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecc
Q 021036 171 KSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQS-------P--RLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAH 241 (318)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-------~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h 241 (318)
.. ......|...|++++|.+..-| + .-+.|++|+.|..|+||+. ...+++.-.++.+|
T Consensus 140 ~t-----------~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~--~~~~w~~e~~l~~H 206 (299)
T KOG1332|consen 140 TT-----------SKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKF--DSDSWKLERTLEGH 206 (299)
T ss_pred cc-----------hhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeec--CCcchhhhhhhhhc
Confidence 00 0122456668999999832111 0 0157999999999999954 45566666679999
Q ss_pred cCceeEEEEcCCC----CEEEEecCCCcEEEEEecCC-ceeee-ecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 242 DQVVTGLAWAFDG----CCLYSCSQDNFVRSWIFHGN-SLSQV-SIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 242 ~~~v~~~~~~~~~----~~l~s~~~d~~v~iwd~~~~-~~~~~-~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
.+.|..++|.|.- .+||++++||+|.||..+.. ...+. ..++. ...++.++||+.|.+|++
T Consensus 207 ~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f-------------~~~~w~vSWS~sGn~LaV 273 (299)
T KOG1332|consen 207 KDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEF-------------PDVVWRVSWSLSGNILAV 273 (299)
T ss_pred chhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccC-------------CcceEEEEEeccccEEEE
Confidence 9999999999962 48999999999999987632 11111 11221 147899999999999987
Q ss_pred E
Q 021036 316 V 316 (318)
Q Consensus 316 ~ 316 (318)
+
T Consensus 274 s 274 (299)
T KOG1332|consen 274 S 274 (299)
T ss_pred e
Confidence 5
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=189.64 Aligned_cols=215 Identities=19% Similarity=0.251 Sum_probs=177.0
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEE
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVS 97 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~ 97 (318)
.-+++||.|++++|||+.+++....+. +|...|..+++|+...|+++++.|+.|+
T Consensus 164 ~wf~tgs~DrtikIwDlatg~Lkltlt-------------------------Ghi~~vr~vavS~rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 164 EWFATGSADRTIKIWDLATGQLKLTLT-------------------------GHIETVRGVAVSKRHPYLFSAGEDKQVK 218 (460)
T ss_pred eeEEecCCCceeEEEEcccCeEEEeec-------------------------chhheeeeeeecccCceEEEecCCCeeE
Confidence 346999999999999999998644433 2333344444444449999999999999
Q ss_pred EEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccc
Q 021036 98 LWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHC 177 (318)
Q Consensus 98 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 177 (318)
-||++.. +.++.+.+|-..|.|++. .|.-+.|++|+.|.++++||+++...+..+.+|.
T Consensus 219 CwDLe~n--------------kvIR~YhGHlS~V~~L~l-------hPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~ 277 (460)
T KOG0285|consen 219 CWDLEYN--------------KVIRHYHGHLSGVYCLDL-------HPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHT 277 (460)
T ss_pred EEechhh--------------hhHHHhccccceeEEEec-------cccceeEEecCCcceEEEeeecccceEEEecCCC
Confidence 9999984 467889999999999999 7778899999999999999999998888887766
Q ss_pred cccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEE
Q 021036 178 VPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCL 257 (318)
Q Consensus 178 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 257 (318)
. +|..+.+. |....+++|+.|++|++| |.+.++ -..++..|...|.+++.+|....+
T Consensus 278 ~--------------~V~~V~~~-----~~dpqvit~S~D~tvrlW--Dl~agk--t~~tlt~hkksvral~lhP~e~~f 334 (460)
T KOG0285|consen 278 N--------------PVASVMCQ-----PTDPQVITGSHDSTVRLW--DLRAGK--TMITLTHHKKSVRALCLHPKENLF 334 (460)
T ss_pred C--------------cceeEEee-----cCCCceEEecCCceEEEe--eeccCc--eeEeeecccceeeEEecCCchhhh
Confidence 5 88888888 778889999999999999 666776 566788899999999999999899
Q ss_pred EEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 258 YSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 258 ~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
|+++.| .|+-|++..+.... .+.+|.+-+++++.+.|+-++.-+
T Consensus 335 ASas~d-nik~w~~p~g~f~~--------------nlsgh~~iintl~~nsD~v~~~G~ 378 (460)
T KOG0285|consen 335 ASASPD-NIKQWKLPEGEFLQ--------------NLSGHNAIINTLSVNSDGVLVSGG 378 (460)
T ss_pred hccCCc-cceeccCCccchhh--------------ccccccceeeeeeeccCceEEEcC
Confidence 999877 58899987766553 355677889999999988666543
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-27 Score=179.73 Aligned_cols=221 Identities=15% Similarity=0.163 Sum_probs=173.7
Q ss_pred CCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCC
Q 021036 68 LSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQ 147 (318)
Q Consensus 68 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~ 147 (318)
+++|..|++.+.++.+|.+|++++.|.+..+|-..+| +.+.++.+|.+.|+|+.. ..+.
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nG--------------erlGty~GHtGavW~~Di-------d~~s 64 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNG--------------ERLGTYDGHTGAVWCCDI-------DWDS 64 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecCC--------------ceeeeecCCCceEEEEEe-------cCCc
Confidence 7789999999999999999999999999999988774 467899999999999999 8889
Q ss_pred cEEEEEeCCCcEEEEECCCcceeeeecccccc----cccc-----------------------------------eeeee
Q 021036 148 VLLVTGSSDGSVRIWDGYIQELQKSAEAHCVP----FSLL-----------------------------------KEVVT 188 (318)
Q Consensus 148 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~----~~~~-----------------------------------~~~~~ 188 (318)
++++||+.|.++++||+.+|+++..++..... |... .....
T Consensus 65 ~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~ 144 (327)
T KOG0643|consen 65 KHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP 144 (327)
T ss_pred ceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec
Confidence 99999999999999999999988765432211 1000 01223
Q ss_pred ecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEE
Q 021036 189 VNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRS 268 (318)
Q Consensus 189 ~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~i 268 (318)
.+...++..-|. |-++.|++|..||.|..| |.+++. +.+..-+.|...|+.++++|+..++++++.|.+-++
T Consensus 145 t~~skit~a~Wg-----~l~~~ii~Ghe~G~is~~--da~~g~-~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl 216 (327)
T KOG0643|consen 145 TPDSKITSALWG-----PLGETIIAGHEDGSISIY--DARTGK-ELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKL 216 (327)
T ss_pred CCccceeeeeec-----ccCCEEEEecCCCcEEEE--EcccCc-eeeechhhhccccccccccCCcceEEecccCcccee
Confidence 345677888888 999999999999999999 677764 256666779999999999999999999999999999
Q ss_pred EEecCCceeeee----------cCCCCCCcc--cc-----------------------------ccCCCcceeeeEEEEc
Q 021036 269 WIFHGNSLSQVS----------IPTNTPGLQ--SC-----------------------------TDLPDAFVSCLGMAVS 307 (318)
Q Consensus 269 wd~~~~~~~~~~----------~~~~~~~~~--~~-----------------------------~~~~~h~~~v~~v~~s 307 (318)
||..+-.+.... ..|....+. |. ....+|.++|++|+|+
T Consensus 217 ~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfh 296 (327)
T KOG0643|consen 217 VDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFH 296 (327)
T ss_pred eeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEEC
Confidence 999874432211 112111111 11 1123999999999999
Q ss_pred CCCcEEEEEe
Q 021036 308 PGNLVVAMVQ 317 (318)
Q Consensus 308 p~~~~l~~~~ 317 (318)
|||+..++|.
T Consensus 297 PdGksYsSGG 306 (327)
T KOG0643|consen 297 PDGKSYSSGG 306 (327)
T ss_pred CCCcccccCC
Confidence 9999888763
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-26 Score=173.24 Aligned_cols=197 Identities=19% Similarity=0.258 Sum_probs=153.3
Q ss_pred ceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEE
Q 021036 19 PTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSL 98 (318)
Q Consensus 19 ~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i 98 (318)
-++|||+||+++|||+....+...+. +... +.++..+|.. .-|++|..+|.|++
T Consensus 97 WMyTgseDgt~kIWdlR~~~~qR~~~-----~~sp---Vn~vvlhpnQ------------------teLis~dqsg~irv 150 (311)
T KOG0315|consen 97 WMYTGSEDGTVKIWDLRSLSCQRNYQ-----HNSP---VNTVVLHPNQ------------------TELISGDQSGNIRV 150 (311)
T ss_pred EEEecCCCceEEEEeccCcccchhcc-----CCCC---cceEEecCCc------------------ceEEeecCCCcEEE
Confidence 36999999999999999855433332 2222 3335555555 89999999999999
Q ss_pred EEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeeccccc
Q 021036 99 WRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCV 178 (318)
Q Consensus 99 w~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~ 178 (318)
||+.+..+.. ..+.....+|.++.. .++|..++.+...|+..+|++.+.+....+..-
T Consensus 151 WDl~~~~c~~-------------~liPe~~~~i~sl~v-------~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~-- 208 (311)
T KOG0315|consen 151 WDLGENSCTH-------------ELIPEDDTSIQSLTV-------MPDGSMLAAANNKGNCYVWRLLNHQTASELEPV-- 208 (311)
T ss_pred EEccCCcccc-------------ccCCCCCcceeeEEE-------cCCCcEEEEecCCccEEEEEccCCCccccceEh--
Confidence 9999865421 123344578999999 899999999999999999999875433332211
Q ss_pred ccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEE
Q 021036 179 PFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLY 258 (318)
Q Consensus 179 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 258 (318)
.....|..-+..+.++ |++++|++++.|.+++||+ ..+. ++....+++|...++..+||.||+||+
T Consensus 209 ------~k~~ah~~~il~C~lS-----Pd~k~lat~ssdktv~iwn--~~~~-~kle~~l~gh~rWvWdc~FS~dg~Ylv 274 (311)
T KOG0315|consen 209 ------HKFQAHNGHILRCLLS-----PDVKYLATCSSDKTVKIWN--TDDF-FKLELVLTGHQRWVWDCAFSADGEYLV 274 (311)
T ss_pred ------hheecccceEEEEEEC-----CCCcEEEeecCCceEEEEe--cCCc-eeeEEEeecCCceEEeeeeccCccEEE
Confidence 1135667788888999 9999999999999999995 4444 445667889999999999999999999
Q ss_pred EecCCCcEEEEEecCCcee
Q 021036 259 SCSQDNFVRSWIFHGNSLS 277 (318)
Q Consensus 259 s~~~d~~v~iwd~~~~~~~ 277 (318)
+++.|+++++|++..++..
T Consensus 275 Tassd~~~rlW~~~~~k~v 293 (311)
T KOG0315|consen 275 TASSDHTARLWDLSAGKEV 293 (311)
T ss_pred ecCCCCceeecccccCcee
Confidence 9999999999999987654
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.1e-26 Score=213.48 Aligned_cols=230 Identities=20% Similarity=0.196 Sum_probs=169.7
Q ss_pred CccceEEeeCCCceeEeecCCCCCCC-cee--cchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecC
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLP-LIT--ADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGR 92 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~ 92 (318)
+...+++|+.|+.|++||+....... ... ........ .+.++.|+|.. +.+|++++.
T Consensus 494 dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~---~v~~l~~~~~~-----------------~~~las~~~ 553 (793)
T PLN00181 494 DGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRS---KLSGICWNSYI-----------------KSQVASSNF 553 (793)
T ss_pred CCCEEEEEeCCCEEEEEECCcccccccccccceEEecccC---ceeeEEeccCC-----------------CCEEEEEeC
Confidence 44568999999999999986421100 000 00011111 23346776653 489999999
Q ss_pred CCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCC-CCCcEEEEEeCCCcEEEEECCCcceee
Q 021036 93 SGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSS-NPQVLLVTGSSDGSVRIWDGYIQELQK 171 (318)
Q Consensus 93 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~-~~~~~l~s~~~d~~v~iwd~~~~~~~~ 171 (318)
||.|++||+.++ +.+..+.+|.+.|++++| + .++.+|++|+.|++|++||++++....
T Consensus 554 Dg~v~lWd~~~~--------------~~~~~~~~H~~~V~~l~~-------~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~ 612 (793)
T PLN00181 554 EGVVQVWDVARS--------------QLVTEMKEHEKRVWSIDY-------SSADPTLLASGSDDGSVKLWSINQGVSIG 612 (793)
T ss_pred CCeEEEEECCCC--------------eEEEEecCCCCCEEEEEE-------cCCCCCEEEEEcCCCEEEEEECCCCcEEE
Confidence 999999999874 456778899999999999 5 478899999999999999999887766
Q ss_pred eecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEc
Q 021036 172 SAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWA 251 (318)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 251 (318)
.+..+ ..+.++.|. ++++.+|++|+.||.|++|| .+..+ .++..+.+|...|.++.|.
T Consensus 613 ~~~~~---------------~~v~~v~~~----~~~g~~latgs~dg~I~iwD--~~~~~-~~~~~~~~h~~~V~~v~f~ 670 (793)
T PLN00181 613 TIKTK---------------ANICCVQFP----SESGRSLAFGSADHKVYYYD--LRNPK-LPLCTMIGHSKTVSYVRFV 670 (793)
T ss_pred EEecC---------------CCeEEEEEe----CCCCCEEEEEeCCCeEEEEE--CCCCC-ccceEecCCCCCEEEEEEe
Confidence 55432 267888886 36799999999999999995 44432 1455677899999999997
Q ss_pred CCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 252 FDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 252 ~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
++.+|++++.|++|++||++...... ... ....+.+|...+..++|+|++.+||+|.
T Consensus 671 -~~~~lvs~s~D~~ikiWd~~~~~~~~-~~~-------~l~~~~gh~~~i~~v~~s~~~~~lasgs 727 (793)
T PLN00181 671 -DSSTLVSSSTDNTLKLWDLSMSISGI-NET-------PLHSFMGHTNVKNFVGLSVSDGYIATGS 727 (793)
T ss_pred -CCCEEEEEECCCEEEEEeCCCCcccc-CCc-------ceEEEcCCCCCeeEEEEcCCCCEEEEEe
Confidence 67899999999999999987532100 000 0013445777889999999999999984
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.2e-27 Score=176.15 Aligned_cols=188 Identities=16% Similarity=0.197 Sum_probs=161.3
Q ss_pred CCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCc
Q 021036 69 SSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQV 148 (318)
Q Consensus 69 ~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~ 148 (318)
..+.++|..+.++-+|+|.++++.|.+|++|+... +.+++++.+|...|..++. +.+..
T Consensus 14 ~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~r--------------g~liktYsghG~EVlD~~~-------s~Dns 72 (307)
T KOG0316|consen 14 DCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLR--------------GALIKTYSGHGHEVLDAAL-------SSDNS 72 (307)
T ss_pred cccccceEEEEEccCCCEEEEcCCCceEEeecccc--------------cceeeeecCCCceeeeccc-------ccccc
Confidence 34566777777777779999999999999999988 4578999999999999999 78888
Q ss_pred EEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccC
Q 021036 149 LLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDIS 228 (318)
Q Consensus 149 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~ 228 (318)
.|++|+.|..+.+||+.+|+....+.+|.. .|+.+.|+ .+...+++|+.|.++++|| -+
T Consensus 73 kf~s~GgDk~v~vwDV~TGkv~Rr~rgH~a--------------qVNtV~fN-----eesSVv~SgsfD~s~r~wD--CR 131 (307)
T KOG0316|consen 73 KFASCGGDKAVQVWDVNTGKVDRRFRGHLA--------------QVNTVRFN-----EESSVVASGSFDSSVRLWD--CR 131 (307)
T ss_pred ccccCCCCceEEEEEcccCeeeeecccccc--------------eeeEEEec-----CcceEEEeccccceeEEEE--cc
Confidence 999999999999999999999988876654 89999999 8899999999999999994 55
Q ss_pred CCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcC
Q 021036 229 CNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSP 308 (318)
Q Consensus 229 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp 308 (318)
...++|++.+......|.++... ++.|++|+.||+++.||++.+.+..-... .+|++++|++
T Consensus 132 S~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~g----------------~pit~vs~s~ 193 (307)
T KOG0316|consen 132 SRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYFG----------------HPITSVSFSK 193 (307)
T ss_pred cCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhcC----------------CcceeEEecC
Confidence 55666999998888899888776 66799999999999999998877642222 2899999999
Q ss_pred CCcEEEEE
Q 021036 309 GNLVVAMV 316 (318)
Q Consensus 309 ~~~~l~~~ 316 (318)
|++..+.+
T Consensus 194 d~nc~La~ 201 (307)
T KOG0316|consen 194 DGNCSLAS 201 (307)
T ss_pred CCCEEEEe
Confidence 99876654
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.7e-27 Score=177.35 Aligned_cols=216 Identities=19% Similarity=0.302 Sum_probs=168.2
Q ss_pred CCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEEEEccCC
Q 021036 25 KSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVP 104 (318)
Q Consensus 25 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~ 104 (318)
..|.+.|.|+...+.+.... .|.-.+... .++|++.. .+.+++++.||+++|||....
T Consensus 36 G~G~L~ile~~~~~gi~e~~--s~d~~D~Lf---dV~Wse~~-----------------e~~~~~a~GDGSLrl~d~~~~ 93 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKGIQECQ--SYDTEDGLF---DVAWSENH-----------------ENQVIAASGDGSLRLFDLTMP 93 (311)
T ss_pred cCceEEEEecCCCCCeEEEE--eeeccccee---EeeecCCC-----------------cceEEEEecCceEEEeccCCC
Confidence 35777787887555444433 233344433 48999887 689999999999999996543
Q ss_pred ccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccce
Q 021036 105 KCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLK 184 (318)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 184 (318)
..++..++.|...|.++.| +...++.++++|.|++|++|+...++.+.++.+|..
T Consensus 94 -------------s~Pi~~~kEH~~EV~Svdw------n~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~------ 148 (311)
T KOG0277|consen 94 -------------SKPIHKFKEHKREVYSVDW------NTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNS------ 148 (311)
T ss_pred -------------CcchhHHHhhhhheEEecc------ccccceeEEeeccCCceEeecCCCCcceEeecCCcc------
Confidence 3588899999999999999 455667899999999999999999988888876654
Q ss_pred eeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcC-CCCEEEEecCC
Q 021036 185 EVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAF-DGCCLYSCSQD 263 (318)
Q Consensus 185 ~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d 263 (318)
-|+...|+ |..+++|++++.|+.+++||++... + .+. +..|...|.++.|+. +...++||+.|
T Consensus 149 --------~Iy~a~~s----p~~~nlfas~Sgd~~l~lwdvr~~g-k--~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd 212 (311)
T KOG0277|consen 149 --------CIYQAAFS----PHIPNLFASASGDGTLRLWDVRSPG-K--FMS-IEAHNSEILCCDWSKYNHNVLATGGVD 212 (311)
T ss_pred --------EEEEEecC----CCCCCeEEEccCCceEEEEEecCCC-c--eeE-EEeccceeEeecccccCCcEEEecCCC
Confidence 78899999 4678999999999999999876653 3 232 778999999999998 56689999999
Q ss_pred CcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCC-cEEEEE
Q 021036 264 NFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGN-LVVAMV 316 (318)
Q Consensus 264 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~-~~l~~~ 316 (318)
+.|+.||++.-...- ..+.+|.-.|+.|+|||.. ..||++
T Consensus 213 ~~vr~wDir~~r~pl-------------~eL~gh~~AVRkvk~Sph~~~lLaSa 253 (311)
T KOG0277|consen 213 NLVRGWDIRNLRTPL-------------FELNGHGLAVRKVKFSPHHASLLASA 253 (311)
T ss_pred ceEEEEehhhccccc-------------eeecCCceEEEEEecCcchhhHhhhc
Confidence 999999998744322 1334577799999999953 455543
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.8e-27 Score=189.81 Aligned_cols=255 Identities=15% Similarity=0.197 Sum_probs=178.7
Q ss_pred cCcCCCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCC-ccEE
Q 021036 9 SNKMKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNW-FSIL 87 (318)
Q Consensus 9 ~~~~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~-~~~l 87 (318)
..++-+.+...+++++..+.+.|||+.+....+.... ...|+.++.+|...-.++.+++. ...|
T Consensus 129 RaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~---------------~~~Pdl~L~gH~~eg~glsWn~~~~g~L 193 (422)
T KOG0264|consen 129 RARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASG---------------ECRPDLRLKGHEKEGYGLSWNRQQEGTL 193 (422)
T ss_pred hhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccc---------------cCCCceEEEeecccccccccccccceeE
Confidence 3456677777888899999999999877443332210 11223333333333333333332 5689
Q ss_pred EEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCc
Q 021036 88 AVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQ 167 (318)
Q Consensus 88 ~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 167 (318)
++|+.|+.|.+||++..... .....+...+.+|.+.|..++|+|+ +..+|++++.|+.+.|||++++
T Consensus 194 ls~~~d~~i~lwdi~~~~~~-------~~~~~p~~~~~~h~~~VeDV~~h~~------h~~lF~sv~dd~~L~iwD~R~~ 260 (422)
T KOG0264|consen 194 LSGSDDHTICLWDINAESKE-------DKVVDPKTIFSGHEDVVEDVAWHPL------HEDLFGSVGDDGKLMIWDTRSN 260 (422)
T ss_pred eeccCCCcEEEEeccccccC-------CccccceEEeecCCcceehhhcccc------chhhheeecCCCeEEEEEcCCC
Confidence 99999999999999864310 0113456678999999999999544 4467999999999999999963
Q ss_pred --ceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCce
Q 021036 168 --ELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVV 245 (318)
Q Consensus 168 --~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v 245 (318)
+..+.. .+|.++|++++|+ |.++.+||+|+.|++|++| |+|.-.. ++.++.+|...|
T Consensus 261 ~~~~~~~~--------------~ah~~~vn~~~fn----p~~~~ilAT~S~D~tV~Lw--DlRnL~~-~lh~~e~H~dev 319 (422)
T KOG0264|consen 261 TSKPSHSV--------------KAHSAEVNCVAFN----PFNEFILATGSADKTVALW--DLRNLNK-PLHTFEGHEDEV 319 (422)
T ss_pred CCCCcccc--------------cccCCceeEEEeC----CCCCceEEeccCCCcEEEe--echhccc-CceeccCCCcce
Confidence 222222 4566799999999 4678899999999999999 5666543 788999999999
Q ss_pred eEEEEcCC-CCEEEEecCCCcEEEEEecCCceeee-ecCCC-CCCccccccCCCcceeeeEEEEcCCCcEEE
Q 021036 246 TGLAWAFD-GCCLYSCSQDNFVRSWIFHGNSLSQV-SIPTN-TPGLQSCTDLPDAFVSCLGMAVSPGNLVVA 314 (318)
Q Consensus 246 ~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~~~-~~~~~-~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~ 314 (318)
.+|.|+|. ...||+++.|+.+.+||+..-...+. ..... .+. --....||...|..+.|+|+..+++
T Consensus 320 ~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppE--llF~HgGH~~kV~DfsWnp~ePW~I 389 (422)
T KOG0264|consen 320 FQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPE--LLFIHGGHTAKVSDFSWNPNEPWTI 389 (422)
T ss_pred EEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcc--eeEEecCcccccccccCCCCCCeEE
Confidence 99999997 55899999999999999975222111 10011 010 0012357999999999999776544
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.5e-28 Score=197.06 Aligned_cols=206 Identities=18% Similarity=0.229 Sum_probs=173.6
Q ss_pred CCCCcccccccCCCC-CccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCC
Q 021036 68 LSSKKYPVPQNGSSN-WFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNP 146 (318)
Q Consensus 68 ~~~~~~~v~~~~~s~-~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~ 146 (318)
+.+|.-.|+++.+.| .+.+|++++.|+.|+||++... .+.++++.+|..+|.+++| +.+
T Consensus 210 ~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~-------------~~~lrtf~gH~k~Vrd~~~-------s~~ 269 (503)
T KOG0282|consen 210 LSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD-------------RRCLRTFKGHRKPVRDASF-------NNC 269 (503)
T ss_pred ccCCccccchhhhccceeeEEEecCCCceEEEEEEecC-------------cceehhhhcchhhhhhhhc-------ccc
Confidence 557888899999999 6899999999999999999863 4678999999999999999 999
Q ss_pred CcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCc-eEEEEEeCCCcEEEeee
Q 021036 147 QVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRL-MLLAVGKGSGSFDLWKC 225 (318)
Q Consensus 147 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~-~~l~~~~~dg~i~vw~~ 225 (318)
|..|++++.|+.|++||+++|++...+.... .++++.|. |++ +.|++|+.|+.|+.|
T Consensus 270 g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~---------------~~~cvkf~-----pd~~n~fl~G~sd~ki~~w-- 327 (503)
T KOG0282|consen 270 GTSFLSASFDRFLKLWDTETGQVLSRFHLDK---------------VPTCVKFH-----PDNQNIFLVGGSDKKIRQW-- 327 (503)
T ss_pred CCeeeeeecceeeeeeccccceEEEEEecCC---------------CceeeecC-----CCCCcEEEEecCCCcEEEE--
Confidence 9999999999999999999999998887554 67899999 776 899999999999999
Q ss_pred ccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCcee------------eeecCCCCCCccc-c-
Q 021036 226 DISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLS------------QVSIPTNTPGLQS-C- 291 (318)
Q Consensus 226 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~------------~~~~~~~~~~~~~-~- 291 (318)
|+++++ .++++..|-+.|..+.|-++|+++++.++|++++||+.+..... .+..+++.+.+++ +
T Consensus 328 DiRs~k--vvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~ 405 (503)
T KOG0282|consen 328 DIRSGK--VVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM 405 (503)
T ss_pred eccchH--HHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhcc
Confidence 777887 77888889999999999999999999999999999998754332 2334555554431 1
Q ss_pred ------------------ccCCCcc--eeeeEEEEcCCCcEEEEEe
Q 021036 292 ------------------TDLPDAF--VSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 292 ------------------~~~~~h~--~~v~~v~~sp~~~~l~~~~ 317 (318)
..+.+|. +.-..|.|||||++|++|.
T Consensus 406 dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGd 451 (503)
T KOG0282|consen 406 DNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGD 451 (503)
T ss_pred CceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeec
Confidence 1123664 4456899999999999986
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.6e-26 Score=187.49 Aligned_cols=250 Identities=16% Similarity=0.169 Sum_probs=188.8
Q ss_pred CcCCCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeeccccc----------------------
Q 021036 10 NKMKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLR---------------------- 67 (318)
Q Consensus 10 ~~~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~---------------------- 67 (318)
.++.|+.. -+++|-..|++||||....+.+.+-...- ..+. +..++|++++.
T Consensus 65 AkySPsG~-yiASGD~sG~vRIWdtt~~~hiLKnef~v--~aG~---I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~ 138 (603)
T KOG0318|consen 65 AKYSPSGF-YIASGDVSGKVRIWDTTQKEHILKNEFQV--LAGP---IKDISWDFDSKRIAAVGEGRERFGHVFLWDSGN 138 (603)
T ss_pred EEeCCCce-EEeecCCcCcEEEEeccCcceeeeeeeee--cccc---cccceeCCCCcEEEEEecCccceeEEEEecCCC
Confidence 34555533 57888889999999987643322211111 1122 22266666542
Q ss_pred ----CCCCcccccccCCCCC-ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCC
Q 021036 68 ----LSSKKYPVPQNGSSNW-FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSD 142 (318)
Q Consensus 68 ----~~~~~~~v~~~~~s~~-~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 142 (318)
+.+|...|+++++=|. .-.+++|++|++|.+|+-.. .+...+++.|...|+|++|
T Consensus 139 SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPP--------------FKFk~s~r~HskFV~~VRy------ 198 (603)
T KOG0318|consen 139 SVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPP--------------FKFKSSFREHSKFVNCVRY------ 198 (603)
T ss_pred ccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCC--------------eeeeecccccccceeeEEE------
Confidence 5688889999999887 45689999999999998654 5677788999999999999
Q ss_pred CCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEE
Q 021036 143 SSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDL 222 (318)
Q Consensus 143 ~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~v 222 (318)
+|+|++|++++.||++.+||-.+++.+..+... .+|++.|..++|+ ||+..|++++.|.++++
T Consensus 199 -sPDG~~Fat~gsDgki~iyDGktge~vg~l~~~-----------~aHkGsIfalsWs-----PDs~~~~T~SaDkt~KI 261 (603)
T KOG0318|consen 199 -SPDGSRFATAGSDGKIYIYDGKTGEKVGELEDS-----------DAHKGSIFALSWS-----PDSTQFLTVSADKTIKI 261 (603)
T ss_pred -CCCCCeEEEecCCccEEEEcCCCccEEEEecCC-----------CCccccEEEEEEC-----CCCceEEEecCCceEEE
Confidence 999999999999999999999999988887642 4588899999999 99999999999999999
Q ss_pred eeeccCCC---------------------------------------eeeEeeeeecccCceeEEEEcCCCCEEEEecCC
Q 021036 223 WKCDISCN---------------------------------------KFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQD 263 (318)
Q Consensus 223 w~~~~~~~---------------------------------------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 263 (318)
||+..+.- ...++..+.+|...|+++..+|++++|++|+.|
T Consensus 262 WdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyD 341 (603)
T KOG0318|consen 262 WDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYD 341 (603)
T ss_pred EEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccC
Confidence 97421100 001223456899999999999999999999999
Q ss_pred CcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 264 NFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 264 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
|.|.-|+..++....+.... |...|.+++-+..+.++.+
T Consensus 342 G~I~~W~~~~g~~~~~~g~~-------------h~nqI~~~~~~~~~~~~t~ 380 (603)
T KOG0318|consen 342 GHINSWDSGSGTSDRLAGKG-------------HTNQIKGMAASESGELFTI 380 (603)
T ss_pred ceEEEEecCCcccccccccc-------------ccceEEEEeecCCCcEEEE
Confidence 99999999887766553332 4556777776665555443
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.1e-26 Score=198.28 Aligned_cols=209 Identities=18% Similarity=0.150 Sum_probs=149.0
Q ss_pred CcCCCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCC-ccEEE
Q 021036 10 NKMKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNW-FSILA 88 (318)
Q Consensus 10 ~~~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~-~~~l~ 88 (318)
..+.+.+.+.+++||.|++|++||++++....... .|...+.+|...|.+++|+|+ +++|+
T Consensus 81 v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~------------------~~l~~L~gH~~~V~~l~f~P~~~~iLa 142 (493)
T PTZ00421 81 VAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNIS------------------DPIVHLQGHTKKVGIVSFHPSAMNVLA 142 (493)
T ss_pred EEEcCCCCCEEEEEeCCCEEEEEecCCCccccccC------------------cceEEecCCCCcEEEEEeCcCCCCEEE
Confidence 34444456779999999999999998753211110 011123344555555555554 47999
Q ss_pred EecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcc
Q 021036 89 VGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQE 168 (318)
Q Consensus 89 ~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 168 (318)
+|+.|+.|+|||++++ +.+..+.+|...|.+++| ++++.+|++++.|++|++||+++++
T Consensus 143 Sgs~DgtVrIWDl~tg--------------~~~~~l~~h~~~V~sla~-------spdG~lLatgs~Dg~IrIwD~rsg~ 201 (493)
T PTZ00421 143 SAGADMVVNVWDVERG--------------KAVEVIKCHSDQITSLEW-------NLDGSLLCTTSKDKKLNIIDPRDGT 201 (493)
T ss_pred EEeCCCEEEEEECCCC--------------eEEEEEcCCCCceEEEEE-------ECCCCEEEEecCCCEEEEEECCCCc
Confidence 9999999999999984 355678899999999999 8899999999999999999999988
Q ss_pred eeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe----CCCcEEEeeeccCCCeeeEeeeeecc-cC
Q 021036 169 LQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK----GSGSFDLWKCDISCNKFDKVGSYNAH-DQ 243 (318)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~----~dg~i~vw~~~~~~~~~~~~~~~~~h-~~ 243 (318)
.+..+..|.. .....+.|. +++..+++++ .|+.|++|| .+.... ++.....+ ..
T Consensus 202 ~v~tl~~H~~-------------~~~~~~~w~-----~~~~~ivt~G~s~s~Dr~VklWD--lr~~~~-p~~~~~~d~~~ 260 (493)
T PTZ00421 202 IVSSVEAHAS-------------AKSQRCLWA-----KRKDLIITLGCSKSQQRQIMLWD--TRKMAS-PYSTVDLDQSS 260 (493)
T ss_pred EEEEEecCCC-------------CcceEEEEc-----CCCCeEEEEecCCCCCCeEEEEe--CCCCCC-ceeEeccCCCC
Confidence 7776665542 123456677 6666666544 478999995 443321 33333322 34
Q ss_pred ceeEEEEcCCCCEEEEec-CCCcEEEEEecCCceee
Q 021036 244 VVTGLAWAFDGCCLYSCS-QDNFVRSWIFHGNSLSQ 278 (318)
Q Consensus 244 ~v~~~~~~~~~~~l~s~~-~d~~v~iwd~~~~~~~~ 278 (318)
.+....|++++.+|++++ .|+.|++||+.++....
T Consensus 261 ~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~ 296 (493)
T PTZ00421 261 ALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTF 296 (493)
T ss_pred ceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEE
Confidence 555667899999988887 59999999999876543
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.4e-26 Score=176.88 Aligned_cols=242 Identities=15% Similarity=0.137 Sum_probs=172.5
Q ss_pred CcCCCCCccceEEeeCCCceeEeecCCC-CCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEE
Q 021036 10 NKMKDSNTHPTVAASKSKGNSITKIPSN-CCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILA 88 (318)
Q Consensus 10 ~~~~~~~~~~~~t~s~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~ 88 (318)
.++.+.....++++|-|++||+|+++.. ...++. ...+.+. +++++|+.++ ..++
T Consensus 33 l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka---~~~~~~P---vL~v~Wsddg------------------skVf 88 (347)
T KOG0647|consen 33 LAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKA---QQSHDGP---VLDVCWSDDG------------------SKVF 88 (347)
T ss_pred eEeccccCceEEecccCCceEEEEEecCCcccchh---hhccCCC---eEEEEEccCC------------------ceEE
Confidence 4555655556679999999999999874 433311 2233443 3336666665 9999
Q ss_pred EecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcc
Q 021036 89 VGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQE 168 (318)
Q Consensus 89 ~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 168 (318)
+|+.|+.+++||+.+++ +..+..|.++|.++.|-+ ...-..|+|||.|++|++||+++..
T Consensus 89 ~g~~Dk~~k~wDL~S~Q---------------~~~v~~Hd~pvkt~~wv~-----~~~~~cl~TGSWDKTlKfWD~R~~~ 148 (347)
T KOG0647|consen 89 SGGCDKQAKLWDLASGQ---------------VSQVAAHDAPVKTCHWVP-----GMNYQCLVTGSWDKTLKFWDTRSSN 148 (347)
T ss_pred eeccCCceEEEEccCCC---------------eeeeeecccceeEEEEec-----CCCcceeEecccccceeecccCCCC
Confidence 99999999999999864 456788999999999922 1223589999999999999999888
Q ss_pred eeeeecccccccccc---------------------------eeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEE
Q 021036 169 LQKSAEAHCVPFSLL---------------------------KEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFD 221 (318)
Q Consensus 169 ~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~ 221 (318)
.+.++...+..+... +.....-+..+++++.. ++.+.+|.|+-+|.+.
T Consensus 149 pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f-----~d~~~~alGsiEGrv~ 223 (347)
T KOG0647|consen 149 PVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACF-----QDKDGFALGSIEGRVA 223 (347)
T ss_pred eeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEE-----ecCCceEeeeecceEE
Confidence 777665443322110 01112234467888887 7888889999999999
Q ss_pred EeeeccCCCeeeEeeeeeccc---------CceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccc
Q 021036 222 LWKCDISCNKFDKVGSYNAHD---------QVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCT 292 (318)
Q Consensus 222 vw~~~~~~~~~~~~~~~~~h~---------~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 292 (318)
+..++....+ .-.+|+.|. ..|.+++|+|....|+|++.||+..+||-..+.....
T Consensus 224 iq~id~~~~~--~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~------------- 288 (347)
T KOG0647|consen 224 IQYIDDPNPK--DNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKT------------- 288 (347)
T ss_pred EEecCCCCcc--CceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhc-------------
Confidence 9877654322 233455554 2467789999888999999999999999866443321
Q ss_pred cCCCcceeeeEEEEcCCCcEEEEE
Q 021036 293 DLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 293 ~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
...|..+|++.+|+.+|.++|-+
T Consensus 289 -s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 289 -SETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred -cCcCCCccceeEecCCCCEEEEE
Confidence 11244599999999999998864
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=211.11 Aligned_cols=234 Identities=15% Similarity=0.139 Sum_probs=170.8
Q ss_pred ccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcE
Q 021036 17 THPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKV 96 (318)
Q Consensus 17 ~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i 96 (318)
...+++++.|+++++||+.+++.+..+.. |... +.+++|+|.. +.+|++|+.||.|
T Consensus 545 ~~~las~~~Dg~v~lWd~~~~~~~~~~~~----H~~~---V~~l~~~p~~-----------------~~~L~Sgs~Dg~v 600 (793)
T PLN00181 545 KSQVASSNFEGVVQVWDVARSQLVTEMKE----HEKR---VWSIDYSSAD-----------------PTLLASGSDDGSV 600 (793)
T ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEecC----CCCC---EEEEEEcCCC-----------------CCEEEEEcCCCEE
Confidence 45689999999999999988765443322 4333 4447776533 4899999999999
Q ss_pred EEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcc-eeeeecc
Q 021036 97 SLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQE-LQKSAEA 175 (318)
Q Consensus 97 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~~~ 175 (318)
++||+.++. .+..+..+ ..|.++.| .++++.+|++|+.|+.|++||+++.+ ....+.
T Consensus 601 ~iWd~~~~~--------------~~~~~~~~-~~v~~v~~------~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~- 658 (793)
T PLN00181 601 KLWSINQGV--------------SIGTIKTK-ANICCVQF------PSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI- 658 (793)
T ss_pred EEEECCCCc--------------EEEEEecC-CCeEEEEE------eCCCCCEEEEEeCCCeEEEEECCCCCccceEec-
Confidence 999998754 34455544 57899999 34578999999999999999998764 233333
Q ss_pred cccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCC--CeeeEeeeeecccCceeEEEEcCC
Q 021036 176 HCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISC--NKFDKVGSYNAHDQVVTGLAWAFD 253 (318)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~ 253 (318)
.|...|.++.|. ++..|++++.|+.|++||+.... ....++..+.+|...+..++|+|+
T Consensus 659 -------------~h~~~V~~v~f~------~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~ 719 (793)
T PLN00181 659 -------------GHSKTVSYVRFV------DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVS 719 (793)
T ss_pred -------------CCCCCEEEEEEe------CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCC
Confidence 345589999995 57789999999999999654221 112367788899999999999999
Q ss_pred CCEEEEecCCCcEEEEEecCCcee-eeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 254 GCCLYSCSQDNFVRSWIFHGNSLS-QVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 254 ~~~l~s~~~d~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
+.+|++|+.|+.|++|+....... ......... + .......|...|.+++|+|++.+|++|.
T Consensus 720 ~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~-~-~~~~~~~~~~~V~~v~ws~~~~~lva~~ 782 (793)
T PLN00181 720 DGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDP-V-SGLEVDDASQFISSVCWRGQSSTLVAAN 782 (793)
T ss_pred CCEEEEEeCCCEEEEEECCCCCceEEEecccCCc-c-cccccCCCCcEEEEEEEcCCCCeEEEec
Confidence 999999999999999997654322 111111000 0 0011234667899999999999999874
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-26 Score=190.72 Aligned_cols=229 Identities=17% Similarity=0.252 Sum_probs=171.5
Q ss_pred ccCcCCCCCccceEEeeCCCceeEeecCC-CCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccE
Q 021036 8 TSNKMKDSNTHPTVAASKSKGNSITKIPS-NCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSI 86 (318)
Q Consensus 8 ~~~~~~~~~~~~~~t~s~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~ 86 (318)
++..+.+...|.+++++.|+.|++|++.. ++|+.++. +|..+|.++.|+++|..
T Consensus 218 sai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~-------------------------gH~k~Vrd~~~s~~g~~ 272 (503)
T KOG0282|consen 218 SAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFK-------------------------GHRKPVRDASFNNCGTS 272 (503)
T ss_pred chhhhccceeeEEEecCCCceEEEEEEecCcceehhhh-------------------------cchhhhhhhhccccCCe
Confidence 44567777889999999999999999876 66655543 34445555555555599
Q ss_pred EEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCC-cEEEEEeCCCcEEEEECC
Q 021036 87 LAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQ-VLLVTGSSDGSVRIWDGY 165 (318)
Q Consensus 87 l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~-~~l~s~~~d~~v~iwd~~ 165 (318)
+++++.|+.|++||+++|++ +..+.. ...++|+.| .|++ +.|++|+.|+.|+.||++
T Consensus 273 fLS~sfD~~lKlwDtETG~~--------------~~~f~~-~~~~~cvkf-------~pd~~n~fl~G~sd~ki~~wDiR 330 (503)
T KOG0282|consen 273 FLSASFDRFLKLWDTETGQV--------------LSRFHL-DKVPTCVKF-------HPDNQNIFLVGGSDKKIRQWDIR 330 (503)
T ss_pred eeeeecceeeeeeccccceE--------------EEEEec-CCCceeeec-------CCCCCcEEEEecCCCcEEEEecc
Confidence 99999999999999999764 334432 346799999 5555 889999999999999999
Q ss_pred CcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCC---------------
Q 021036 166 IQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCN--------------- 230 (318)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~--------------- 230 (318)
+++.++.+..|-. .|..+.|- ++|..|++.+.|+.+++|+++....
T Consensus 331 s~kvvqeYd~hLg--------------~i~~i~F~-----~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~ 391 (503)
T KOG0282|consen 331 SGKVVQEYDRHLG--------------AILDITFV-----DEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCL 391 (503)
T ss_pred chHHHHHHHhhhh--------------heeeeEEc-----cCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcce
Confidence 9998877665443 78889998 8999999999999999998432100
Q ss_pred ------ee---------------------eEeeeeeccc--CceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeec
Q 021036 231 ------KF---------------------DKVGSYNAHD--QVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSI 281 (318)
Q Consensus 231 ------~~---------------------~~~~~~~~h~--~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 281 (318)
.+ ..-..+++|. +.-..+.|||||.+|++|+.||.+.+||.++-++..
T Consensus 392 ~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~--- 468 (503)
T KOG0282|consen 392 TLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVS--- 468 (503)
T ss_pred ecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhh---
Confidence 00 0001234554 334578999999999999999999999998866543
Q ss_pred CCCCCCccccccCCCcceeeeEEEEcCCC-cEEEEE
Q 021036 282 PTNTPGLQSCTDLPDAFVSCLGMAVSPGN-LVVAMV 316 (318)
Q Consensus 282 ~~~~~~~~~~~~~~~h~~~v~~v~~sp~~-~~l~~~ 316 (318)
.+..|.+++..+.|+|.. ..+|++
T Consensus 469 -----------~lkah~~~ci~v~wHP~e~Skvat~ 493 (503)
T KOG0282|consen 469 -----------KLKAHDQPCIGVDWHPVEPSKVATC 493 (503)
T ss_pred -----------ccccCCcceEEEEecCCCcceeEec
Confidence 334466799999999953 456665
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.5e-26 Score=170.65 Aligned_cols=229 Identities=16% Similarity=0.146 Sum_probs=174.5
Q ss_pred CCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCC
Q 021036 15 SNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSG 94 (318)
Q Consensus 15 ~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg 94 (318)
.+.+-.+|+++|+++|+|+...+.++++... |-.+|.+.+.+.+...+++|+.|.
T Consensus 27 ~dGnY~ltcGsdrtvrLWNp~rg~liktYsg-------------------------hG~EVlD~~~s~Dnskf~s~GgDk 81 (307)
T KOG0316|consen 27 VDGNYCLTCGSDRTVRLWNPLRGALIKTYSG-------------------------HGHEVLDAALSSDNSKFASCGGDK 81 (307)
T ss_pred cCCCEEEEcCCCceEEeecccccceeeeecC-------------------------CCceeeeccccccccccccCCCCc
Confidence 3456689999999999999998887665543 335556666666668999999999
Q ss_pred cEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCc--ceeee
Q 021036 95 KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQ--ELQKS 172 (318)
Q Consensus 95 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~--~~~~~ 172 (318)
.|.+||+++| +.++.+.+|.+.|+.++| +.+...+++|+.|.++++||.++. ++++.
T Consensus 82 ~v~vwDV~TG--------------kv~Rr~rgH~aqVNtV~f-------NeesSVv~SgsfD~s~r~wDCRS~s~ePiQi 140 (307)
T KOG0316|consen 82 AVQVWDVNTG--------------KVDRRFRGHLAQVNTVRF-------NEESSVVASGSFDSSVRLWDCRSRSFEPIQI 140 (307)
T ss_pred eEEEEEcccC--------------eeeeecccccceeeEEEe-------cCcceEEEeccccceeEEEEcccCCCCccch
Confidence 9999999994 577899999999999999 888899999999999999999864 34443
Q ss_pred ecccccccccc------------------------eeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccC
Q 021036 173 AEAHCVPFSLL------------------------KEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDIS 228 (318)
Q Consensus 173 ~~~~~~~~~~~------------------------~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~ 228 (318)
+......+.-+ ......-..||++++|+ ++++..+.++-|+++++- |..
T Consensus 141 ldea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s-----~d~nc~La~~l~stlrLl--Dk~ 213 (307)
T KOG0316|consen 141 LDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFS-----KDGNCSLASSLDSTLRLL--DKE 213 (307)
T ss_pred hhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEec-----CCCCEEEEeeccceeeec--ccc
Confidence 32211111000 01122346799999999 999999999999999997 777
Q ss_pred CCeeeEeeeeecccCceeEEE--EcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEE
Q 021036 229 CNKFDKVGSYNAHDQVVTGLA--WAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAV 306 (318)
Q Consensus 229 ~~~~~~~~~~~~h~~~v~~~~--~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 306 (318)
+++ .+..+++|...-+.+. ++.....+++|++||.|++||+....+.......... -+.++++
T Consensus 214 tGk--lL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v-------------~v~dl~~ 278 (307)
T KOG0316|consen 214 TGK--LLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTV-------------IVTDLSC 278 (307)
T ss_pred hhH--HHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCce-------------eEEeeec
Confidence 887 7888899987655543 4445568999999999999999887766533333322 3789999
Q ss_pred cCCCc
Q 021036 307 SPGNL 311 (318)
Q Consensus 307 sp~~~ 311 (318)
+|.-.
T Consensus 279 hp~~~ 283 (307)
T KOG0316|consen 279 HPTMD 283 (307)
T ss_pred ccCcc
Confidence 99543
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-25 Score=194.09 Aligned_cols=237 Identities=15% Similarity=0.081 Sum_probs=168.5
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCC-CccEEEEecCCCcE
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSN-WFSILAVGGRSGKV 96 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~-~~~~l~~g~~dg~i 96 (318)
..+++++.+.....|+...+..+.... ..+. +.-++ ..+.+|..+|.+++|+| ++++|++|+.||+|
T Consensus 33 ~~~~~~n~~~~a~~w~~~gg~~v~~~~--~~G~---------~~~~~-~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtI 100 (493)
T PTZ00421 33 SNTIACNDRFIAVPWQQLGSTAVLKHT--DYGK---------LASNP-PILLGQEGPIIDVAFNPFDPQKLFTASEDGTI 100 (493)
T ss_pred CCcEeECCceEEEEEecCCceEEeecc--cccc---------CCCCC-ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEE
Confidence 446778888888888776553211111 1110 00011 12557888888888888 68999999999999
Q ss_pred EEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCC-cEEEEEeCCCcEEEEECCCcceeeeecc
Q 021036 97 SLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQ-VLLVTGSSDGSVRIWDGYIQELQKSAEA 175 (318)
Q Consensus 97 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 175 (318)
++||+.++.... .....+..+.+|...|.+++| ++.+ .+|++++.|++|+|||+.+++....+..
T Consensus 101 kIWdi~~~~~~~-------~~~~~l~~L~gH~~~V~~l~f-------~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~ 166 (493)
T PTZ00421 101 MGWGIPEEGLTQ-------NISDPIVHLQGHTKKVGIVSF-------HPSAMNVLASAGADMVVNVWDVERGKAVEVIKC 166 (493)
T ss_pred EEEecCCCcccc-------ccCcceEEecCCCCcEEEEEe-------CcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcC
Confidence 999997642100 002356678899999999999 6654 6899999999999999998877666654
Q ss_pred cccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCc-eeEEEEcCCC
Q 021036 176 HCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQV-VTGLAWAFDG 254 (318)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~ 254 (318)
|. ..|.+++|+ |++.+|++++.|+.|++| |.++++ .+.++.+|.+. +..+.|.+++
T Consensus 167 h~--------------~~V~sla~s-----pdG~lLatgs~Dg~IrIw--D~rsg~--~v~tl~~H~~~~~~~~~w~~~~ 223 (493)
T PTZ00421 167 HS--------------DQITSLEWN-----LDGSLLCTTSKDKKLNII--DPRDGT--IVSSVEAHASAKSQRCLWAKRK 223 (493)
T ss_pred CC--------------CceEEEEEE-----CCCCEEEEecCCCEEEEE--ECCCCc--EEEEEecCCCCcceEEEEcCCC
Confidence 43 489999999 999999999999999999 566665 56777888764 4567899987
Q ss_pred CEEEEec----CCCcEEEEEecCCce-eeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 255 CCLYSCS----QDNFVRSWIFHGNSL-SQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 255 ~~l~s~~----~d~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
..+++++ .|+.|++||++.... ....... +...+....|++++.+|+++
T Consensus 224 ~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d-------------~~~~~~~~~~d~d~~~L~lg 277 (493)
T PTZ00421 224 DLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLD-------------QSSALFIPFFDEDTNLLYIG 277 (493)
T ss_pred CeEEEEecCCCCCCeEEEEeCCCCCCceeEeccC-------------CCCceEEEEEcCCCCEEEEE
Confidence 7777654 579999999986332 1111101 11245567788888887765
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-26 Score=197.28 Aligned_cols=199 Identities=18% Similarity=0.195 Sum_probs=167.1
Q ss_pred CCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCC
Q 021036 14 DSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRS 93 (318)
Q Consensus 14 ~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~d 93 (318)
......++++|+|+++++|+++..+.... . +.+.-...-..|.-+|++++++|+.+++|||+.|
T Consensus 421 ~~~asffvsvS~D~tlK~W~l~~s~~~~~----~------------~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqD 484 (775)
T KOG0319|consen 421 KLGASFFVSVSQDCTLKLWDLPKSKETAF----P------------IVLTCRYTERAHDKDINCVAIAPNDKLIATGSQD 484 (775)
T ss_pred ccCccEEEEecCCceEEEecCCCcccccc----c------------ceehhhHHHHhhcccccceEecCCCceEEecccc
Confidence 34455689999999999999987322111 0 1111111223477778888888888999999999
Q ss_pred CcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeee
Q 021036 94 GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSA 173 (318)
Q Consensus 94 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 173 (318)
.+.+||+++. .+....+.+|...|+|+.| ++..+.++|+|.|++|+||.+.+..+++++
T Consensus 485 ktaKiW~le~--------------~~l~~vLsGH~RGvw~V~F-------s~~dq~laT~SgD~TvKIW~is~fSClkT~ 543 (775)
T KOG0319|consen 485 KTAKIWDLEQ--------------LRLLGVLSGHTRGVWCVSF-------SKNDQLLATCSGDKTVKIWSISTFSCLKTF 543 (775)
T ss_pred cceeeecccC--------------ceEEEEeeCCccceEEEEe-------ccccceeEeccCCceEEEEEeccceeeeee
Confidence 9999999995 5678899999999999999 899999999999999999999999999999
Q ss_pred cccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCC
Q 021036 174 EAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFD 253 (318)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 253 (318)
.+|.. .|....|- .+++.|++++.||-|++| +..+.. ++.++.+|+..|++++.+|.
T Consensus 544 eGH~~--------------aVlra~F~-----~~~~qliS~~adGliKlW--nikt~e--C~~tlD~H~DrvWaL~~~~~ 600 (775)
T KOG0319|consen 544 EGHTS--------------AVLRASFI-----RNGKQLISAGADGLIKLW--NIKTNE--CEMTLDAHNDRVWALSVSPL 600 (775)
T ss_pred cCccc--------------eeEeeeee-----eCCcEEEeccCCCcEEEE--eccchh--hhhhhhhccceeEEEeecCc
Confidence 88776 78888888 899999999999999999 566766 77899999999999999999
Q ss_pred CCEEEEecCCCcEEEEEec
Q 021036 254 GCCLYSCSQDNFVRSWIFH 272 (318)
Q Consensus 254 ~~~l~s~~~d~~v~iwd~~ 272 (318)
+.+++||+.||.|.+|.=-
T Consensus 601 ~~~~~tgg~Dg~i~~wkD~ 619 (775)
T KOG0319|consen 601 LDMFVTGGGDGRIIFWKDV 619 (775)
T ss_pred cceeEecCCCeEEEEeecC
Confidence 9999999999999999643
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-25 Score=192.75 Aligned_cols=234 Identities=15% Similarity=0.169 Sum_probs=176.6
Q ss_pred CCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCC
Q 021036 15 SNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSG 94 (318)
Q Consensus 15 ~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg 94 (318)
++...++||+.||.|++||..++-|..+++. |... ++.+.|...+ +.+++.+.||
T Consensus 360 pDgq~iaTG~eDgKVKvWn~~SgfC~vTFte----Hts~---Vt~v~f~~~g------------------~~llssSLDG 414 (893)
T KOG0291|consen 360 PDGQLIATGAEDGKVKVWNTQSGFCFVTFTE----HTSG---VTAVQFTARG------------------NVLLSSSLDG 414 (893)
T ss_pred CCCcEEEeccCCCcEEEEeccCceEEEEecc----CCCc---eEEEEEEecC------------------CEEEEeecCC
Confidence 3556789999999999999999988777765 3333 3336676666 9999999999
Q ss_pred cEEEEEccCCccccccccccCCceeEEeeeccc-cccEEEEEeeeecCCCCCCCcEEEEEeCCC-cEEEEECCCcceeee
Q 021036 95 KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAH-NSWITSISLAVLSSDSSNPQVLLVTGSSDG-SVRIWDGYIQELQKS 172 (318)
Q Consensus 95 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~-~v~iwd~~~~~~~~~ 172 (318)
+|+.||+.... ..+++... .-...|++. .+.|++++.|+.|. .|.+|++.+|+.+..
T Consensus 415 tVRAwDlkRYr--------------NfRTft~P~p~Qfscvav-------D~sGelV~AG~~d~F~IfvWS~qTGqllDi 473 (893)
T KOG0291|consen 415 TVRAWDLKRYR--------------NFRTFTSPEPIQFSCVAV-------DPSGELVCAGAQDSFEIFVWSVQTGQLLDI 473 (893)
T ss_pred eEEeeeecccc--------------eeeeecCCCceeeeEEEE-------cCCCCEEEeeccceEEEEEEEeecCeeeeh
Confidence 99999999743 44566542 234578888 88899999999885 799999999999988
Q ss_pred ecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcC
Q 021036 173 AEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAF 252 (318)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 252 (318)
+.+|+. ||.+++|+ |.+..|+++++|.+|++|++-.+.++. .++ .+...+..++|+|
T Consensus 474 LsGHEg--------------PVs~l~f~-----~~~~~LaS~SWDkTVRiW~if~s~~~v---Etl-~i~sdvl~vsfrP 530 (893)
T KOG0291|consen 474 LSGHEG--------------PVSGLSFS-----PDGSLLASGSWDKTVRIWDIFSSSGTV---ETL-EIRSDVLAVSFRP 530 (893)
T ss_pred hcCCCC--------------cceeeEEc-----cccCeEEeccccceEEEEEeeccCcee---eeE-eeccceeEEEEcC
Confidence 877665 89999999 999999999999999999764444432 233 3567889999999
Q ss_pred CCCEEEEecCCCcEEEEEecCCcee-eeecCCCCC----Ccc-ccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 253 DGCCLYSCSQDNFVRSWIFHGNSLS-QVSIPTNTP----GLQ-SCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 253 ~~~~l~s~~~d~~v~iwd~~~~~~~-~~~~~~~~~----~~~-~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
+|+.|+++..||.|.+||....... .+....... ... ............+.+++++||..|++|.
T Consensus 531 dG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG 601 (893)
T KOG0291|consen 531 DGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGG 601 (893)
T ss_pred CCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecC
Confidence 9999999999999999999764433 111111000 000 0111123456889999999999988874
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.7e-26 Score=180.30 Aligned_cols=192 Identities=18% Similarity=0.245 Sum_probs=163.1
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEE
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVS 97 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~ 97 (318)
..++++|.|.+|+.||+.++-|+..+.. |+..+- .+.-+ .||.++|+++.|.+|+
T Consensus 206 d~ilS~srD~tik~We~~tg~cv~t~~~----h~ewvr---~v~v~------------------~DGti~As~s~dqtl~ 260 (406)
T KOG0295|consen 206 DHILSCSRDNTIKAWECDTGYCVKTFPG----HSEWVR---MVRVN------------------QDGTIIASCSNDQTLR 260 (406)
T ss_pred CeeeecccccceeEEecccceeEEeccC----chHhEE---EEEec------------------CCeeEEEecCCCceEE
Confidence 6689999999999999999999888765 444322 23334 4459999999999999
Q ss_pred EEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCC--------CCCCCcEEEEEeCCCcEEEEECCCcce
Q 021036 98 LWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSD--------SSNPQVLLVTGSSDGSVRIWDGYIQEL 169 (318)
Q Consensus 98 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~--------~~~~~~~l~s~~~d~~v~iwd~~~~~~ 169 (318)
+|-+.+++|. ..++.|..+|.|++|.|+..- +...+.++.+++.|++|++||+.++.+
T Consensus 261 vW~~~t~~~k--------------~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~c 326 (406)
T KOG0295|consen 261 VWVVATKQCK--------------AELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMC 326 (406)
T ss_pred EEEeccchhh--------------hhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeE
Confidence 9999997643 568899999999999998641 112346999999999999999999999
Q ss_pred eeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEE
Q 021036 170 QKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLA 249 (318)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~ 249 (318)
+.++.+|.. .|..++|+ |.|++|+++..|+++++| |.++.+ +...+..|+.-+++++
T Consensus 327 L~tL~ghdn--------------wVr~~af~-----p~Gkyi~ScaDDktlrvw--dl~~~~--cmk~~~ah~hfvt~lD 383 (406)
T KOG0295|consen 327 LFTLVGHDN--------------WVRGVAFS-----PGGKYILSCADDKTLRVW--DLKNLQ--CMKTLEAHEHFVTSLD 383 (406)
T ss_pred EEEEecccc--------------eeeeeEEc-----CCCeEEEEEecCCcEEEE--Eeccce--eeeccCCCcceeEEEe
Confidence 999887765 99999999 999999999999999999 556666 6677889999999999
Q ss_pred EcCCCCEEEEecCCCcEEEEEe
Q 021036 250 WAFDGCCLYSCSQDNFVRSWIF 271 (318)
Q Consensus 250 ~~~~~~~l~s~~~d~~v~iwd~ 271 (318)
|+.+..++++|+-|.++++|..
T Consensus 384 fh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 384 FHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred cCCCCceEEeccccceeeeeec
Confidence 9999999999999999999974
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-27 Score=188.05 Aligned_cols=202 Identities=18% Similarity=0.249 Sum_probs=159.7
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEE
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVS 97 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~ 97 (318)
..+++|+.|.+|+|||.++..|+..+.. |.+ .|.|+.+.. +.+++|+.|.+|+
T Consensus 208 ~kiVSGlrDnTikiWD~n~~~c~~~L~G----HtG---------------------SVLCLqyd~--rviisGSSDsTvr 260 (499)
T KOG0281|consen 208 EKIVSGLRDNTIKIWDKNSLECLKILTG----HTG---------------------SVLCLQYDE--RVIVSGSSDSTVR 260 (499)
T ss_pred hhhhcccccCceEEeccccHHHHHhhhc----CCC---------------------cEEeeeccc--eEEEecCCCceEE
Confidence 3479999999999999998777555432 333 334443332 6999999999999
Q ss_pred EEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccc
Q 021036 98 LWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHC 177 (318)
Q Consensus 98 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 177 (318)
+||+++++ ++.++-.|...|..+.| + ..++++++.|.++.+||+.+...+.
T Consensus 261 vWDv~tge--------------~l~tlihHceaVLhlrf-------~--ng~mvtcSkDrsiaVWdm~sps~it------ 311 (499)
T KOG0281|consen 261 VWDVNTGE--------------PLNTLIHHCEAVLHLRF-------S--NGYMVTCSKDRSIAVWDMASPTDIT------ 311 (499)
T ss_pred EEeccCCc--------------hhhHHhhhcceeEEEEE-------e--CCEEEEecCCceeEEEeccCchHHH------
Confidence 99999965 56788899999999999 2 3489999999999999998754221
Q ss_pred cccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEE
Q 021036 178 VPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCL 257 (318)
Q Consensus 178 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 257 (318)
+..+..+|.+.|+.+.|+ .+++++++.|.+|++| ++.+.+ .+.++.+|...|.|+.+. ++++
T Consensus 312 -----~rrVLvGHrAaVNvVdfd-------~kyIVsASgDRTikvW--~~st~e--fvRtl~gHkRGIAClQYr--~rlv 373 (499)
T KOG0281|consen 312 -----LRRVLVGHRAAVNVVDFD-------DKYIVSASGDRTIKVW--STSTCE--FVRTLNGHKRGIACLQYR--DRLV 373 (499)
T ss_pred -----HHHHHhhhhhheeeeccc-------cceEEEecCCceEEEE--ecccee--eehhhhcccccceehhcc--CeEE
Confidence 113345566789998886 4699999999999999 666666 788999999999988775 8899
Q ss_pred EEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEc
Q 021036 258 YSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVS 307 (318)
Q Consensus 258 ~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s 307 (318)
++|+.|.+|++||+..|.+.. -+.||..-|.++.|.
T Consensus 374 VSGSSDntIRlwdi~~G~cLR--------------vLeGHEeLvRciRFd 409 (499)
T KOG0281|consen 374 VSGSSDNTIRLWDIECGACLR--------------VLEGHEELVRCIRFD 409 (499)
T ss_pred EecCCCceEEEEeccccHHHH--------------HHhchHHhhhheeec
Confidence 999999999999999887764 233455667777775
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.8e-25 Score=181.13 Aligned_cols=217 Identities=24% Similarity=0.390 Sum_probs=172.1
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEE
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVS 97 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~ 97 (318)
..+++++.|+.+++||+.+++....+.. +... +.++.|+|.+ +++++++.||.|+
T Consensus 64 ~~l~~~~~~~~i~i~~~~~~~~~~~~~~----~~~~---i~~~~~~~~~------------------~~~~~~~~~~~i~ 118 (289)
T cd00200 64 TYLASGSSDKTIRLWDLETGECVRTLTG----HTSY---VSSVAFSPDG------------------RILSSSSRDKTIK 118 (289)
T ss_pred CEEEEEcCCCeEEEEEcCcccceEEEec----cCCc---EEEEEEcCCC------------------CEEEEecCCCeEE
Confidence 4688899999999999998755444332 2222 4457777766 8999998899999
Q ss_pred EEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccc
Q 021036 98 LWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHC 177 (318)
Q Consensus 98 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 177 (318)
+|++.++ +....+..|...|.++.| ++++.++++++.|+.|++||+++++....+..+
T Consensus 119 ~~~~~~~--------------~~~~~~~~~~~~i~~~~~-------~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~- 176 (289)
T cd00200 119 VWDVETG--------------KCLTTLRGHTDWVNSVAF-------SPDGTFVASSSQDGTIKLWDLRTGKCVATLTGH- 176 (289)
T ss_pred EEECCCc--------------EEEEEeccCCCcEEEEEE-------cCcCCEEEEEcCCCcEEEEEccccccceeEecC-
Confidence 9999863 455667789999999999 777888888888999999999987766665533
Q ss_pred cccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEE
Q 021036 178 VPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCL 257 (318)
Q Consensus 178 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 257 (318)
...+.++.|+ |+++.+++++.++.|++| +.+..+ .+..+..|...+.++.|+|++.++
T Consensus 177 -------------~~~i~~~~~~-----~~~~~l~~~~~~~~i~i~--d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~ 234 (289)
T cd00200 177 -------------TGEVNSVAFS-----PDGEKLLSSSSDGTIKLW--DLSTGK--CLGTLRGHENGVNSVAFSPDGYLL 234 (289)
T ss_pred -------------ccccceEEEC-----CCcCEEEEecCCCcEEEE--ECCCCc--eecchhhcCCceEEEEEcCCCcEE
Confidence 3478999999 899899999999999999 455544 566676788899999999998899
Q ss_pred EEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 258 YSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 258 ~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
++++.|+.|++||+.++..... +..|...+.+++|+|++.+|+++.
T Consensus 235 ~~~~~~~~i~i~~~~~~~~~~~--------------~~~~~~~i~~~~~~~~~~~l~~~~ 280 (289)
T cd00200 235 ASGSEDGTIRVWDLRTGECVQT--------------LSGHTNSVTSLAWSPDGKRLASGS 280 (289)
T ss_pred EEEcCCCcEEEEEcCCceeEEE--------------ccccCCcEEEEEECCCCCEEEEec
Confidence 9888899999999986544321 112445899999999999988864
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=182.36 Aligned_cols=220 Identities=14% Similarity=0.237 Sum_probs=178.8
Q ss_pred ccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcE
Q 021036 17 THPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKV 96 (318)
Q Consensus 17 ~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i 96 (318)
...+++|+.|+++.++|.+.++.+..+.. |.-. ++.+.++|+. ..+++++.|..|
T Consensus 231 ~~~ilTGG~d~~av~~d~~s~q~l~~~~G----h~kk---i~~v~~~~~~------------------~~v~~aSad~~i 285 (506)
T KOG0289|consen 231 SSKILTGGEDKTAVLFDKPSNQILATLKG----HTKK---ITSVKFHKDL------------------DTVITASADEII 285 (506)
T ss_pred CCcceecCCCCceEEEecchhhhhhhccC----cceE---EEEEEeccch------------------hheeecCCcceE
Confidence 35579999999999999999888776654 2222 3336677776 899999999999
Q ss_pred EEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeeccc
Q 021036 97 SLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAH 176 (318)
Q Consensus 97 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 176 (318)
+||...... .......|..+|+.+.. .+.|+||++++.|++..+.|++++..+......
T Consensus 286 ~vws~~~~s--------------~~~~~~~h~~~V~~ls~-------h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~ 344 (506)
T KOG0289|consen 286 RVWSVPLSS--------------EPTSSRPHEEPVTGLSL-------HPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE 344 (506)
T ss_pred Eeecccccc--------------Cccccccccccceeeee-------ccCCcEEEEecCCceEEEEEccCCcEEEEEeec
Confidence 999997633 34567789999999999 899999999999999999999999877654322
Q ss_pred ccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCE
Q 021036 177 CVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCC 256 (318)
Q Consensus 177 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 256 (318)
. ..-.+++.+|+ |||.+|.+|..||.+++| |+..+. .+..|.+|+++|..++|+.+|-|
T Consensus 345 ~------------s~v~~ts~~fH-----pDgLifgtgt~d~~vkiw--dlks~~--~~a~Fpght~~vk~i~FsENGY~ 403 (506)
T KOG0289|consen 345 T------------SDVEYTSAAFH-----PDGLIFGTGTPDGVVKIW--DLKSQT--NVAKFPGHTGPVKAISFSENGYW 403 (506)
T ss_pred c------------ccceeEEeeEc-----CCceEEeccCCCceEEEE--EcCCcc--ccccCCCCCCceeEEEeccCceE
Confidence 1 12368899999 999999999999999999 455554 67889999999999999999999
Q ss_pred EEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 257 LYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 257 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
|+++++|+.|++||++.-+.......+... .+.++.|.+.|++|+.+
T Consensus 404 Lat~add~~V~lwDLRKl~n~kt~~l~~~~-------------~v~s~~fD~SGt~L~~~ 450 (506)
T KOG0289|consen 404 LATAADDGSVKLWDLRKLKNFKTIQLDEKK-------------EVNSLSFDQSGTYLGIA 450 (506)
T ss_pred EEEEecCCeEEEEEehhhcccceeeccccc-------------cceeEEEcCCCCeEEee
Confidence 999999999999999975543322222222 68999999999998875
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-25 Score=182.98 Aligned_cols=249 Identities=18% Similarity=0.165 Sum_probs=185.7
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccC-CCCcccccccCCCCCccEEEEecCCC
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRL-SSKKYPVPQNGSSNWFSILAVGGRSG 94 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~-~~~~~~v~~~~~s~~~~~l~~g~~dg 94 (318)
+....+++|.|++|.-|++.+++...-+-... .+.. ....|...- ..|...++++++|+++++|++|+.|.
T Consensus 153 d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~-----ev~k---~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~ 224 (479)
T KOG0299|consen 153 DDKRVFSASKDGTILKWDVLTGKKDRYIIERD-----EVLK---SHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDR 224 (479)
T ss_pred cccceeecCCCcceeeeehhcCcccccccccc-----hhhh---hccCCCCcccccccceeEEEEEcCCCcEEEecCCCc
Confidence 34456899999999999999988653322211 1111 222332222 37999999999999999999999999
Q ss_pred cEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeec
Q 021036 95 KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAE 174 (318)
Q Consensus 95 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 174 (318)
.|.||+.++. +.++.+.+|.+.|.+++| -.....|++++.|++|++|+++....+.++.
T Consensus 225 ~v~Iw~~~t~--------------ehv~~~~ghr~~V~~L~f-------r~gt~~lys~s~Drsvkvw~~~~~s~vetly 283 (479)
T KOG0299|consen 225 HVQIWDCDTL--------------EHVKVFKGHRGAVSSLAF-------RKGTSELYSASADRSVKVWSIDQLSYVETLY 283 (479)
T ss_pred eEEEecCccc--------------chhhcccccccceeeeee-------ecCccceeeeecCCceEEEehhHhHHHHHHh
Confidence 9999999984 466789999999999999 7777889999999999999998776666655
Q ss_pred ccccccccc---------------------------eeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeecc
Q 021036 175 AHCVPFSLL---------------------------KEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDI 227 (318)
Q Consensus 175 ~~~~~~~~~---------------------------~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 227 (318)
+|+..+.-+ +.+..++...+-|++|- +...|++|+.+|.|.+| ++
T Consensus 284 GHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~I------n~~HfvsGSdnG~IaLW--s~ 355 (479)
T KOG0299|consen 284 GHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFI------NDEHFVSGSDNGSIALW--SL 355 (479)
T ss_pred CCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEe------cccceeeccCCceEEEe--ee
Confidence 554322111 13456677789999996 77899999999999999 55
Q ss_pred CCCeeeEeeeee-cc-----------cCceeEEEEcCCCCEEEEecCCCcEEEEEecCCc--eeeeecCCCCCCcccccc
Q 021036 228 SCNKFDKVGSYN-AH-----------DQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNS--LSQVSIPTNTPGLQSCTD 293 (318)
Q Consensus 228 ~~~~~~~~~~~~-~h-----------~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~ 293 (318)
...+ ++.+.. +| ...|++++..|...++++|+.+|.|++|-+..+. +..+...+
T Consensus 356 ~KKk--plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls---------- 423 (479)
T KOG0299|consen 356 LKKK--PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS---------- 423 (479)
T ss_pred cccC--ceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc----------
Confidence 4544 333321 12 2378999999999999999999999999998762 22221111
Q ss_pred CCCcceeeeEEEEcCCCcEEEEE
Q 021036 294 LPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 294 ~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
-.+.|++++|+++|+.|++|
T Consensus 424 ---~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 424 ---LVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred ---cccEEEEEEEccCCCEEEEe
Confidence 22489999999999977765
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.6e-26 Score=175.77 Aligned_cols=195 Identities=17% Similarity=0.238 Sum_probs=159.7
Q ss_pred ccccCCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCC
Q 021036 64 PVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDS 143 (318)
Q Consensus 64 p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~ 143 (318)
|...+.+|.+.|..+.|+|+|.+||+|+.|..|.+|++... .+....+++|.+.|..+.|
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gd-------------ceN~~~lkgHsgAVM~l~~------- 98 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGD-------------CENFWVLKGHSGAVMELHG------- 98 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccc-------------ccceeeeccccceeEeeee-------
Confidence 34457788999999999999999999999999999997643 2345677899999999999
Q ss_pred CCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEe
Q 021036 144 SNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLW 223 (318)
Q Consensus 144 ~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw 223 (318)
..+++.+++++.|.+|+.||+++|+....++.|.. -|+.+.-+ .....++.+++.|+++++|
T Consensus 99 ~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~--------------~vNs~~p~----rrg~~lv~SgsdD~t~kl~ 160 (338)
T KOG0265|consen 99 MRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTS--------------FVNSLDPS----RRGPQLVCSGSDDGTLKLW 160 (338)
T ss_pred ccCCCEEEEecCCceEEEEecccceeeehhccccc--------------eeeecCcc----ccCCeEEEecCCCceEEEE
Confidence 89999999999999999999999999988887764 45555543 1345788899999999999
Q ss_pred eeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeE
Q 021036 224 KCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLG 303 (318)
Q Consensus 224 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 303 (318)
|++... .++++. ....++++.|..++..+.+|+-|+.|++||++.+.... .+.+|.+.|++
T Consensus 161 --D~R~k~--~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~--------------~lsGh~DtIt~ 221 (338)
T KOG0265|consen 161 --DIRKKE--AIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLY--------------TLSGHADTITG 221 (338)
T ss_pred --eecccc--hhhccc-cceeEEEEEecccccceeeccccCceeeeccccCcceE--------------EeecccCceee
Confidence 666655 455543 35578999999999999999999999999998765543 34556779999
Q ss_pred EEEcCCCcEEEE
Q 021036 304 MAVSPGNLVVAM 315 (318)
Q Consensus 304 v~~sp~~~~l~~ 315 (318)
+..+|+|.++.+
T Consensus 222 lsls~~gs~lls 233 (338)
T KOG0265|consen 222 LSLSRYGSFLLS 233 (338)
T ss_pred EEeccCCCcccc
Confidence 999999988764
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-24 Score=179.18 Aligned_cols=218 Identities=19% Similarity=0.279 Sum_probs=171.3
Q ss_pred ccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcE
Q 021036 17 THPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKV 96 (318)
Q Consensus 17 ~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i 96 (318)
...+++++.|+.+++|++.+++....+.. +... +..+.|.|.+ +++++++.||.|
T Consensus 21 ~~~l~~~~~~g~i~i~~~~~~~~~~~~~~----~~~~---i~~~~~~~~~------------------~~l~~~~~~~~i 75 (289)
T cd00200 21 GKLLATGSGDGTIKVWDLETGELLRTLKG----HTGP---VRDVAASADG------------------TYLASGSSDKTI 75 (289)
T ss_pred CCEEEEeecCcEEEEEEeeCCCcEEEEec----CCcc---eeEEEECCCC------------------CEEEEEcCCCeE
Confidence 45678889999999999988763333222 2222 2346777766 899999999999
Q ss_pred EEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeeccc
Q 021036 97 SLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAH 176 (318)
Q Consensus 97 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 176 (318)
++|++.+++ ....+..|...|.++.| .++++++++++.|+.+.+||+++++....+..+
T Consensus 76 ~i~~~~~~~--------------~~~~~~~~~~~i~~~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 134 (289)
T cd00200 76 RLWDLETGE--------------CVRTLTGHTSYVSSVAF-------SPDGRILSSSSRDKTIKVWDVETGKCLTTLRGH 134 (289)
T ss_pred EEEEcCccc--------------ceEEEeccCCcEEEEEE-------cCCCCEEEEecCCCeEEEEECCCcEEEEEeccC
Confidence 999998743 45667788889999999 777888888888999999999977766655533
Q ss_pred ccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCE
Q 021036 177 CVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCC 256 (318)
Q Consensus 177 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 256 (318)
...+.++.++ |++.++++++.++.|++|+ .+..+ .+..+..|...+.++.|+|+++.
T Consensus 135 --------------~~~i~~~~~~-----~~~~~l~~~~~~~~i~i~d--~~~~~--~~~~~~~~~~~i~~~~~~~~~~~ 191 (289)
T cd00200 135 --------------TDWVNSVAFS-----PDGTFVASSSQDGTIKLWD--LRTGK--CVATLTGHTGEVNSVAFSPDGEK 191 (289)
T ss_pred --------------CCcEEEEEEc-----CcCCEEEEEcCCCcEEEEE--ccccc--cceeEecCccccceEEECCCcCE
Confidence 3479999999 8888999888899999994 54444 55667788889999999999999
Q ss_pred EEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 257 LYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 257 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
+++++.|+.|++||++.+...... ..|...+.+++|+|++.+++++.
T Consensus 192 l~~~~~~~~i~i~d~~~~~~~~~~--------------~~~~~~i~~~~~~~~~~~~~~~~ 238 (289)
T cd00200 192 LLSSSSDGTIKLWDLSTGKCLGTL--------------RGHENGVNSVAFSPDGYLLASGS 238 (289)
T ss_pred EEEecCCCcEEEEECCCCceecch--------------hhcCCceEEEEEcCCCcEEEEEc
Confidence 999999999999999875544321 12445889999999988888763
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-25 Score=168.86 Aligned_cols=221 Identities=14% Similarity=0.194 Sum_probs=171.1
Q ss_pred CCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCC
Q 021036 15 SNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSG 94 (318)
Q Consensus 15 ~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg 94 (318)
.+...+++|+.|+++++|+++..+....... .+|.+.+.. +.|+|.. ..++++++.|.
T Consensus 30 ~~g~~lasgs~dktv~v~n~e~~r~~~~~~~--~gh~~svdq---l~w~~~~-----------------~d~~atas~dk 87 (313)
T KOG1407|consen 30 CDGTKLASGSFDKTVSVWNLERDRFRKELVY--RGHTDSVDQ---LCWDPKH-----------------PDLFATASGDK 87 (313)
T ss_pred ccCceeeecccCCceEEEEecchhhhhhhcc--cCCCcchhh---heeCCCC-----------------CcceEEecCCc
Confidence 3455689999999999999988755444433 335555444 8888877 58999999999
Q ss_pred cEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeec
Q 021036 95 KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAE 174 (318)
Q Consensus 95 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 174 (318)
+|++||+..+++ ........+.|+ +.| +|+|.+++.+..|..|.+.|.++.+.....+
T Consensus 88 ~ir~wd~r~~k~--------------~~~i~~~~eni~-i~w-------sp~g~~~~~~~kdD~it~id~r~~~~~~~~~ 145 (313)
T KOG1407|consen 88 TIRIWDIRSGKC--------------TARIETKGENIN-ITW-------SPDGEYIAVGNKDDRITFIDARTYKIVNEEQ 145 (313)
T ss_pred eEEEEEeccCcE--------------EEEeeccCcceE-EEE-------cCCCCEEEEecCcccEEEEEecccceeehhc
Confidence 999999998664 333433334444 688 8999999999999999999999877666544
Q ss_pred ccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCC
Q 021036 175 AHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDG 254 (318)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 254 (318)
... .+..++|+ .++++|+..+..|.|.|-.+ . ..+++.++++|.....|+.|+|+|
T Consensus 146 ~~~---------------e~ne~~w~-----~~nd~Fflt~GlG~v~ILsy--p--sLkpv~si~AH~snCicI~f~p~G 201 (313)
T KOG1407|consen 146 FKF---------------EVNEISWN-----NSNDLFFLTNGLGCVEILSY--P--SLKPVQSIKAHPSNCICIEFDPDG 201 (313)
T ss_pred ccc---------------eeeeeeec-----CCCCEEEEecCCceEEEEec--c--ccccccccccCCcceEEEEECCCC
Confidence 322 56778888 66777777777999999743 3 345899999999999999999999
Q ss_pred CEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 255 CCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 255 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
++||+|+.|..+.+||+..--+.+... .+.-+|+.++|+.||+|||++.
T Consensus 202 ryfA~GsADAlvSLWD~~ELiC~R~is--------------RldwpVRTlSFS~dg~~lASaS 250 (313)
T KOG1407|consen 202 RYFATGSADALVSLWDVDELICERCIS--------------RLDWPVRTLSFSHDGRMLASAS 250 (313)
T ss_pred ceEeeccccceeeccChhHhhhheeec--------------cccCceEEEEeccCcceeeccC
Confidence 999999999999999997643332221 1223899999999999999874
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.1e-26 Score=187.33 Aligned_cols=247 Identities=15% Similarity=0.089 Sum_probs=164.2
Q ss_pred CCCccceEEeeCCCceeEeecCCCCCC-CceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecC
Q 021036 14 DSNTHPTVAASKSKGNSITKIPSNCCL-PLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGR 92 (318)
Q Consensus 14 ~~~~~~~~t~s~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~ 92 (318)
+.+...+++||.|.+|+.||+...... +.+..-+ ......+..+.|++.+ ..|++.+.
T Consensus 176 Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~---P~E~h~i~sl~ys~Tg------------------~~iLvvsg 234 (641)
T KOG0772|consen 176 DPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQ---PCETHQINSLQYSVTG------------------DQILVVSG 234 (641)
T ss_pred cCCCceeeeccccceEEEEecccccccchhhhccC---cccccccceeeecCCC------------------CeEEEEec
Confidence 355667899999999999999864321 1111100 0111113347777776 67666666
Q ss_pred CCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCccee-e
Q 021036 93 SGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQ-K 171 (318)
Q Consensus 93 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~-~ 171 (318)
....+|+|...-+...-..+.. -..-+...++|...++|.+|+|.. .+.|+|++.||++++||+.+.+.. +
T Consensus 235 ~aqakl~DRdG~~~~e~~KGDQ--YI~Dm~nTKGHia~lt~g~whP~~------k~~FlT~s~DgtlRiWdv~~~k~q~q 306 (641)
T KOG0772|consen 235 SAQAKLLDRDGFEIVEFSKGDQ--YIRDMYNTKGHIAELTCGCWHPDN------KEEFLTCSYDGTLRIWDVNNTKSQLQ 306 (641)
T ss_pred CcceeEEccCCceeeeeeccch--hhhhhhccCCceeeeeccccccCc------ccceEEecCCCcEEEEecCCchhhee
Confidence 7789999987533211000000 011223457899999999995543 356999999999999999865432 2
Q ss_pred eecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccC--ceeEEE
Q 021036 172 SAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQ--VVTGLA 249 (318)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~--~v~~~~ 249 (318)
.+..... .+..-+++.++|+ ++|++||+|+.||.|.+|+....+-.. ....-.+|.. .|++++
T Consensus 307 Vik~k~~---------~g~Rv~~tsC~~n-----rdg~~iAagc~DGSIQ~W~~~~~~v~p-~~~vk~AH~~g~~Itsi~ 371 (641)
T KOG0772|consen 307 VIKTKPA---------GGKRVPVTSCAWN-----RDGKLIAAGCLDGSIQIWDKGSRTVRP-VMKVKDAHLPGQDITSIS 371 (641)
T ss_pred EEeeccC---------CCcccCceeeecC-----CCcchhhhcccCCceeeeecCCccccc-ceEeeeccCCCCceeEEE
Confidence 3322111 2234478899999 999999999999999999643222221 2222346776 899999
Q ss_pred EcCCCCEEEEecCCCcEEEEEecCCce--eeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 250 WAFDGCCLYSCSQDNFVRSWIFHGNSL--SQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 250 ~~~~~~~l~s~~~d~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
||++|++|++-+.|+++++||++.-+. ......+... +-+.++|||+.++|++|-
T Consensus 372 FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~-------------~~tdc~FSPd~kli~TGt 428 (641)
T KOG0772|consen 372 FSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPF-------------PGTDCCFSPDDKLILTGT 428 (641)
T ss_pred eccccchhhhccCCCceeeeeccccccchhhhcCCCccC-------------CCCccccCCCceEEEecc
Confidence 999999999999999999999987332 2222222221 447899999999999874
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-25 Score=182.79 Aligned_cols=219 Identities=22% Similarity=0.297 Sum_probs=165.6
Q ss_pred CCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCC
Q 021036 15 SNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSG 94 (318)
Q Consensus 15 ~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg 94 (318)
++...+++|...|-|+++|+.+...+..+.. |... +....|+|.. +..+++|++|+
T Consensus 78 ~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~a----h~ap---v~~~~f~~~d-----------------~t~l~s~sDd~ 133 (487)
T KOG0310|consen 78 SDGRLLAAGDESGHVKVFDMKSRVILRQLYA----HQAP---VHVTKFSPQD-----------------NTMLVSGSDDK 133 (487)
T ss_pred cCCeEEEccCCcCcEEEeccccHHHHHHHhh----ccCc---eeEEEecccC-----------------CeEEEecCCCc
Confidence 3455678888899999999655333333333 2222 2225566655 67888999999
Q ss_pred cEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCc-ceeeee
Q 021036 95 KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQ-ELQKSA 173 (318)
Q Consensus 95 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~-~~~~~~ 173 (318)
.+++||+.+.. ....+.+|++.|.|.+| ++.++..++||+.||+|++||++.. ..+.++
T Consensus 134 v~k~~d~s~a~--------------v~~~l~~htDYVR~g~~------~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el 193 (487)
T KOG0310|consen 134 VVKYWDLSTAY--------------VQAELSGHTDYVRCGDI------SPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL 193 (487)
T ss_pred eEEEEEcCCcE--------------EEEEecCCcceeEeecc------ccCCCeEEEecCCCceEEEEEeccCCceeEEe
Confidence 99999999742 34578999999999999 4456679999999999999999976 333333
Q ss_pred cccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCC
Q 021036 174 EAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFD 253 (318)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 253 (318)
. |..+|..+.+- |.|.++++++ ...|++|| +.++. +.+..+..|...|+|+.+..+
T Consensus 194 n---------------hg~pVe~vl~l-----psgs~iasAg-Gn~vkVWD--l~~G~-qll~~~~~H~KtVTcL~l~s~ 249 (487)
T KOG0310|consen 194 N---------------HGCPVESVLAL-----PSGSLIASAG-GNSVKVWD--LTTGG-QLLTSMFNHNKTVTCLRLASD 249 (487)
T ss_pred c---------------CCCceeeEEEc-----CCCCEEEEcC-CCeEEEEE--ecCCc-eehhhhhcccceEEEEEeecC
Confidence 3 55589999998 8999999988 67799995 54333 255666669999999999999
Q ss_pred CCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 254 GCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 254 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
++.|++++.|+.|++||+.+-+...-..-+ ++|.+++.+||++.++.|
T Consensus 250 ~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~---------------~pvLsiavs~dd~t~viG 297 (487)
T KOG0310|consen 250 STRLLSGSLDRHVKVFDTTNYKVVHSWKYP---------------GPVLSIAVSPDDQTVVIG 297 (487)
T ss_pred CceEeecccccceEEEEccceEEEEeeecc---------------cceeeEEecCCCceEEEe
Confidence 999999999999999997665443221112 489999999999888776
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-26 Score=181.24 Aligned_cols=228 Identities=17% Similarity=0.199 Sum_probs=176.5
Q ss_pred CCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCC
Q 021036 15 SNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSG 94 (318)
Q Consensus 15 ~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg 94 (318)
.+...+++||.||-+.+||+.+|+..+.+.... ...+.-+..+|.|+.||.+...||+|+.||
T Consensus 223 PDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQA-----------------qd~fMMmd~aVlci~FSRDsEMlAsGsqDG 285 (508)
T KOG0275|consen 223 PDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQA-----------------QDNFMMMDDAVLCISFSRDSEMLASGSQDG 285 (508)
T ss_pred CCCceEeeccccceeeeehhccchhhhhhhhhh-----------------hcceeecccceEEEeecccHHHhhccCcCC
Confidence 345668999999999999999998766554321 223444556777777777779999999999
Q ss_pred cEEEEEccCCccccccccccCCceeEEeeec-cccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeee
Q 021036 95 KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQ-AHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSA 173 (318)
Q Consensus 95 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 173 (318)
.|++|.+++|.|+ +.|. +|...|+|+.| +.++..+++++.|.++++.-+.+|++++.+
T Consensus 286 kIKvWri~tG~Cl--------------RrFdrAHtkGvt~l~F-------SrD~SqiLS~sfD~tvRiHGlKSGK~LKEf 344 (508)
T KOG0275|consen 286 KIKVWRIETGQCL--------------RRFDRAHTKGVTCLSF-------SRDNSQILSASFDQTVRIHGLKSGKCLKEF 344 (508)
T ss_pred cEEEEEEecchHH--------------HHhhhhhccCeeEEEE-------ccCcchhhcccccceEEEeccccchhHHHh
Confidence 9999999998765 4554 89999999999 899999999999999999999999999999
Q ss_pred cccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCee---------------------
Q 021036 174 EAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKF--------------------- 232 (318)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~--------------------- 232 (318)
.+|.. -|+...|. ++|..+++++.||+|++|+ ..+.++
T Consensus 345 rGHsS--------------yvn~a~ft-----~dG~~iisaSsDgtvkvW~--~KtteC~~Tfk~~~~d~~vnsv~~~PK 403 (508)
T KOG0275|consen 345 RGHSS--------------YVNEATFT-----DDGHHIISASSDGTVKVWH--GKTTECLSTFKPLGTDYPVNSVILLPK 403 (508)
T ss_pred cCccc--------------cccceEEc-----CCCCeEEEecCCccEEEec--CcchhhhhhccCCCCcccceeEEEcCC
Confidence 87765 78889998 9999999999999999995 222210
Q ss_pred ---------------------eEeeeee---cccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCc
Q 021036 233 ---------------------DKVGSYN---AHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGL 288 (318)
Q Consensus 233 ---------------------~~~~~~~---~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~ 288 (318)
+.+.++. ...+...+...+|.|.++.+.++|+.++.|.+.++.+...
T Consensus 404 npeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~t--------- 474 (508)
T KOG0275|consen 404 NPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERT--------- 474 (508)
T ss_pred CCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeee---------
Confidence 0001111 0123344567899999999999999999999998887642
Q ss_pred cccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 289 QSCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 289 ~~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
+..|...|-+++-+|....||+
T Consensus 475 -----l~VhEkdvIGl~HHPHqNllAs 496 (508)
T KOG0275|consen 475 -----LPVHEKDVIGLTHHPHQNLLAS 496 (508)
T ss_pred -----eecccccccccccCcccchhhh
Confidence 2334446677777777666654
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=190.28 Aligned_cols=242 Identities=15% Similarity=0.164 Sum_probs=181.3
Q ss_pred CcCCCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEE
Q 021036 10 NKMKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAV 89 (318)
Q Consensus 10 ~~~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~ 89 (318)
......+..-++||+.||.|++|++......+.-.. ...++.|..=|.++....+++.|++
T Consensus 30 Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~-------------------~asme~HsDWVNDiiL~~~~~tlIS 90 (735)
T KOG0308|consen 30 LQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPY-------------------IASMEHHSDWVNDIILCGNGKTLIS 90 (735)
T ss_pred ccccCCCCceEEecCCCceEEEeccccccCCcccch-------------------hhhhhhhHhHHhhHHhhcCCCceEE
Confidence 344555566699999999999999876543211110 0022233333444444555689999
Q ss_pred ecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcc-
Q 021036 90 GGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQE- 168 (318)
Q Consensus 90 g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~- 168 (318)
++.|-+|++|+...+. .-...++..|.+.|.|+++ ..++..++++|+-|+.|.+||+.++.
T Consensus 91 ~SsDtTVK~W~~~~~~------------~~c~stir~H~DYVkcla~------~ak~~~lvaSgGLD~~IflWDin~~~~ 152 (735)
T KOG0308|consen 91 ASSDTTVKVWNAHKDN------------TFCMSTIRTHKDYVKCLAY------IAKNNELVASGGLDRKIFLWDINTGTA 152 (735)
T ss_pred ecCCceEEEeecccCc------------chhHhhhhcccchheeeee------cccCceeEEecCCCccEEEEEccCcch
Confidence 9999999999998753 1245678899999999999 35677899999999999999999873
Q ss_pred -eeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeE
Q 021036 169 -LQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTG 247 (318)
Q Consensus 169 -~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~ 247 (318)
....+..-.. .....++..+|++++.+ +.|..|++|+.++.+++| |.++.+ .+..++||+..|..
T Consensus 153 ~l~~s~n~~t~-----~sl~sG~k~siYSLA~N-----~t~t~ivsGgtek~lr~w--Dprt~~--kimkLrGHTdNVr~ 218 (735)
T KOG0308|consen 153 TLVASFNNVTV-----NSLGSGPKDSIYSLAMN-----QTGTIIVSGGTEKDLRLW--DPRTCK--KIMKLRGHTDNVRV 218 (735)
T ss_pred hhhhhcccccc-----ccCCCCCccceeeeecC-----CcceEEEecCcccceEEe--cccccc--ceeeeeccccceEE
Confidence 3332221110 01122667799999999 999999999999999999 677766 77788999999999
Q ss_pred EEEcCCCCEEEEecCCCcEEEEEecCCce-eeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 248 LAWAFDGCCLYSCSQDNFVRSWIFHGNSL-SQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 248 ~~~~~~~~~l~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
+..++||+.+++++.||+|++||+....+ .++.. |...|+++..+|+=+.+.+|.
T Consensus 219 ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~v---------------H~e~VWaL~~~~sf~~vYsG~ 274 (735)
T KOG0308|consen 219 LLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIV---------------HKEGVWALQSSPSFTHVYSGG 274 (735)
T ss_pred EEEcCCCCeEeecCCCceEEeeeccccceeeeEEe---------------ccCceEEEeeCCCcceEEecC
Confidence 99999999999999999999999987544 34444 444789999888877777764
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-25 Score=173.15 Aligned_cols=224 Identities=17% Similarity=0.160 Sum_probs=163.0
Q ss_pred cCCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCc-----cccccc--c-----ccCCc----------eeEEe--
Q 021036 67 RLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPK-----CYSVED--C-----KVPTT----------AVLIG-- 122 (318)
Q Consensus 67 ~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~-----~~~~~~--~-----~~~~~----------~~~~~-- 122 (318)
.+.+|..+|++++|+.+|++|++++.|++|+||++++-+ ++++.. . .+..+ +..+.
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vy 160 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVY 160 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEE
Confidence 378999999999999999999999999999999997522 111100 0 00000 00000
Q ss_pred ---------------------eeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccc
Q 021036 123 ---------------------LFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFS 181 (318)
Q Consensus 123 ---------------------~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~ 181 (318)
--+.|...|-.+-. ..++.+|++++.|..|.+|++. |+.+..+.....
T Consensus 161 k~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGi-------A~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~--- 229 (420)
T KOG2096|consen 161 KLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGI-------AGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQS--- 229 (420)
T ss_pred EeeecccCCCCcccccccccccchhcccceEEEee-------cCCceEEEEecCCCcEEEEecC-Cceeeeeccccc---
Confidence 01124445555555 6778999999999999999998 888887765554
Q ss_pred cceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeecc-CCCee---eEeeeeecccCceeEEEEcCCCCEE
Q 021036 182 LLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDI-SCNKF---DKVGSYNAHDQVVTGLAWAFDGCCL 257 (318)
Q Consensus 182 ~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~-~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l 257 (318)
.-+..+++ |+|+++++++....|++|..-. +.+++ ..+.++++|...|..++|+++.+.+
T Consensus 230 -----------~n~~aavS-----P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~ 293 (420)
T KOG2096|consen 230 -----------SNYDAAVS-----PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRA 293 (420)
T ss_pred -----------cccceeeC-----CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCccee
Confidence 45667888 9999999999999999996422 23332 3456789999999999999999999
Q ss_pred EEecCCCcEEEEEecC----------------------CceeeeecCCCCCCcc--ccccC---------------CCcc
Q 021036 258 YSCSQDNFVRSWIFHG----------------------NSLSQVSIPTNTPGLQ--SCTDL---------------PDAF 298 (318)
Q Consensus 258 ~s~~~d~~v~iwd~~~----------------------~~~~~~~~~~~~~~~~--~~~~~---------------~~h~ 298 (318)
++.+.||+++|||+.- +....+...|++..++ ...++ ..|+
T Consensus 294 vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~ 373 (420)
T KOG2096|consen 294 VTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHS 373 (420)
T ss_pred EEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhc
Confidence 9999999999999852 1112444555555444 11111 1689
Q ss_pred eeeeEEEEcCCCcEEEEEe
Q 021036 299 VSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 299 ~~v~~v~~sp~~~~l~~~~ 317 (318)
..|.+++|+++|+++|++.
T Consensus 374 ~~Is~is~~~~g~~~atcG 392 (420)
T KOG2096|consen 374 TTISSISYSSDGKYIATCG 392 (420)
T ss_pred CceeeEEecCCCcEEeeec
Confidence 9999999999999999874
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-24 Score=188.92 Aligned_cols=228 Identities=15% Similarity=0.055 Sum_probs=148.2
Q ss_pred CCCCCccceEEeeCCCceeEeecCCCCC-CCceecchhccccccccceeeeecccccCCCCcccccccCCCCCcc-EEEE
Q 021036 12 MKDSNTHPTVAASKSKGNSITKIPSNCC-LPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFS-ILAV 89 (318)
Q Consensus 12 ~~~~~~~~~~t~s~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~-~l~~ 89 (318)
+.+.+...+++|+.|++|++||++++.. ...+.. |...+.+|...|.++.|+|++. +|++
T Consensus 82 fsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~------------------p~~~L~gH~~~V~sVaf~P~g~~iLaS 143 (568)
T PTZ00420 82 FNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKD------------------PQCILKGHKKKISIIDWNPMNYYIMCS 143 (568)
T ss_pred EcCCCCCEEEEEeCCCeEEEEECCCCCcccccccc------------------ceEEeecCCCcEEEEEECCCCCeEEEE
Confidence 3444456789999999999999986532 111100 0001223334444444444435 5678
Q ss_pred ecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcce
Q 021036 90 GGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQEL 169 (318)
Q Consensus 90 g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 169 (318)
++.|+.|+|||+.+++ .+..+. |...|.+++| +++|.+|++++.|+.|+|||+++++.
T Consensus 144 gS~DgtIrIWDl~tg~--------------~~~~i~-~~~~V~Slsw-------spdG~lLat~s~D~~IrIwD~Rsg~~ 201 (568)
T PTZ00420 144 SGFDSFVNIWDIENEK--------------RAFQIN-MPKKLSSLKW-------NIKGNLLSGTCVGKHMHIIDPRKQEI 201 (568)
T ss_pred EeCCCeEEEEECCCCc--------------EEEEEe-cCCcEEEEEE-------CCCCCEEEEEecCCEEEEEECCCCcE
Confidence 9999999999999854 333443 5678999999 89999999999999999999999988
Q ss_pred eeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCC----cEEEeeeccCCCeeeEeeeee--cccC
Q 021036 170 QKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSG----SFDLWKCDISCNKFDKVGSYN--AHDQ 243 (318)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg----~i~vw~~~~~~~~~~~~~~~~--~h~~ 243 (318)
+..+..|..... ...+....|+ +++.+|++++.++ .|+|||++.. .+ ++..+. .+.+
T Consensus 202 i~tl~gH~g~~~---------s~~v~~~~fs-----~d~~~IlTtG~d~~~~R~VkLWDlr~~-~~--pl~~~~ld~~~~ 264 (568)
T PTZ00420 202 ASSFHIHDGGKN---------TKNIWIDGLG-----GDDNYILSTGFSKNNMREMKLWDLKNT-TS--ALVTMSIDNASA 264 (568)
T ss_pred EEEEecccCCce---------eEEEEeeeEc-----CCCCEEEEEEcCCCCccEEEEEECCCC-CC--ceEEEEecCCcc
Confidence 877766653100 0112233445 7888888887664 7999954321 22 333332 2333
Q ss_pred ceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCC
Q 021036 244 VVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPG 309 (318)
Q Consensus 244 ~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 309 (318)
.+...-..++|.++++|+.|++|++|++..+.+..+.... +..++.+++|.|+
T Consensus 265 ~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~-------------s~~p~~g~~f~Pk 317 (568)
T PTZ00420 265 PLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYK-------------SCSPFRSFGFLPK 317 (568)
T ss_pred ceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccc-------------cCCCccceEEccc
Confidence 3333333445889999999999999999877554433222 2346677777774
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-24 Score=171.96 Aligned_cols=233 Identities=18% Similarity=0.210 Sum_probs=157.6
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCc
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGK 95 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~ 95 (318)
+..-++||+.|....+|++.++.....+. +|++. +.++.|+.+ |.+||+|+.+|.
T Consensus 75 ~~~l~aTGGgDD~AflW~~~~ge~~~elt----gHKDS---Vt~~~Fshd------------------gtlLATGdmsG~ 129 (399)
T KOG0296|consen 75 NNNLVATGGGDDLAFLWDISTGEFAGELT----GHKDS---VTCCSFSHD------------------GTLLATGDMSGK 129 (399)
T ss_pred CCceEEecCCCceEEEEEccCCcceeEec----CCCCc---eEEEEEccC------------------ceEEEecCCCcc
Confidence 55667999999999999999987433332 24443 333555555 499999999999
Q ss_pred EEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecc
Q 021036 96 VSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEA 175 (318)
Q Consensus 96 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 175 (318)
|+||...++. ....+...-..|.=+.| .|.+..|+.|+.||.+.+|.+.++...+.+.+
T Consensus 130 v~v~~~stg~--------------~~~~~~~e~~dieWl~W-------Hp~a~illAG~~DGsvWmw~ip~~~~~kv~~G 188 (399)
T KOG0296|consen 130 VLVFKVSTGG--------------EQWKLDQEVEDIEWLKW-------HPRAHILLAGSTDGSVWMWQIPSQALCKVMSG 188 (399)
T ss_pred EEEEEcccCc--------------eEEEeecccCceEEEEe-------cccccEEEeecCCCcEEEEECCCcceeeEecC
Confidence 9999999864 23334333445555777 67888999999999999999998776676666
Q ss_pred cccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeee----------------
Q 021036 176 HCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYN---------------- 239 (318)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~---------------- 239 (318)
|.. ++++-.|. |+|+.++++..||+|++|+ ..++. ++..+.
T Consensus 189 h~~--------------~ct~G~f~-----pdGKr~~tgy~dgti~~Wn--~ktg~--p~~~~~~~e~~~~~~~~~~~~~ 245 (399)
T KOG0296|consen 189 HNS--------------PCTCGEFI-----PDGKRILTGYDDGTIIVWN--PKTGQ--PLHKITQAEGLELPCISLNLAG 245 (399)
T ss_pred CCC--------------Cccccccc-----CCCceEEEEecCceEEEEe--cCCCc--eeEEecccccCcCCcccccccc
Confidence 554 78888888 8899999999999999994 44443 222211
Q ss_pred -----------------------------------cccCceeEEEEcC---CCCEEEEecCCCcEEEEEecCCceeeeec
Q 021036 240 -----------------------------------AHDQVVTGLAWAF---DGCCLYSCSQDNFVRSWIFHGNSLSQVSI 281 (318)
Q Consensus 240 -----------------------------------~h~~~v~~~~~~~---~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 281 (318)
.+...+.++.+.| .-.+.|+|+.||+|.|||+....+.....
T Consensus 246 ~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~ 325 (399)
T KOG0296|consen 246 STLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE 325 (399)
T ss_pred ceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc
Confidence 1111222333333 23466777888888888876544432222
Q ss_pred CCC---------CCCcc-cc----------------ccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 282 PTN---------TPGLQ-SC----------------TDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 282 ~~~---------~~~~~-~~----------------~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
++. ..++. ++ .+..+|...|..++.+|++++++|+.
T Consensus 326 he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s 387 (399)
T KOG0296|consen 326 HEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVS 387 (399)
T ss_pred CCCceEEEEEcCcchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEec
Confidence 221 12221 11 12348999999999999999999874
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.5e-25 Score=190.71 Aligned_cols=195 Identities=18% Similarity=0.217 Sum_probs=151.9
Q ss_pred ccCCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCC
Q 021036 66 LRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSN 145 (318)
Q Consensus 66 ~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 145 (318)
..+.+|..+|+++.||.++ +|+++++|.+||+|++...+|+ +.| .|.+.|+|++| ++.
T Consensus 363 ~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL--------------~~F-~HndfVTcVaF------nPv 420 (712)
T KOG0283|consen 363 CEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECL--------------KVF-SHNDFVTCVAF------NPV 420 (712)
T ss_pred hhhhccchhheecccccCC-eeEeccccccEEeecCCCccee--------------eEE-ecCCeeEEEEe------ccc
Confidence 3478999999999999865 8899999999999999986654 445 59999999999 456
Q ss_pred CCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeee
Q 021036 146 PQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKC 225 (318)
Q Consensus 146 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~ 225 (318)
+.++|++|+-||.|+||++...+...-...+. -|++++|. |+|+..++|+.+|.+++|
T Consensus 421 DDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~---------------lITAvcy~-----PdGk~avIGt~~G~C~fY-- 478 (712)
T KOG0283|consen 421 DDRYFISGSLDGKVRLWSISDKKVVDWNDLRD---------------LITAVCYS-----PDGKGAVIGTFNGYCRFY-- 478 (712)
T ss_pred CCCcEeecccccceEEeecCcCeeEeehhhhh---------------hheeEEec-----cCCceEEEEEeccEEEEE--
Confidence 77899999999999999998877666555444 69999999 999999999999999999
Q ss_pred ccCCCeeeEeeeeecc------cCceeEEEEcCC-CCEEEEecCCCcEEEEEecCCce-eeeecCCCCCCccccccCCCc
Q 021036 226 DISCNKFDKVGSYNAH------DQVVTGLAWAFD-GCCLYSCSQDNFVRSWIFHGNSL-SQVSIPTNTPGLQSCTDLPDA 297 (318)
Q Consensus 226 ~~~~~~~~~~~~~~~h------~~~v~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~h 297 (318)
+....++..-..+..| ...|+++.|.|. ...+++.+.|..|||||.+...+ ..++...+..
T Consensus 479 ~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~----------- 547 (712)
T KOG0283|consen 479 DTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTS----------- 547 (712)
T ss_pred EccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCC-----------
Confidence 5556553322222211 237999999985 34678888999999999976443 3333333221
Q ss_pred ceeeeEEEEcCCCcEEEEEe
Q 021036 298 FVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 298 ~~~v~~v~~sp~~~~l~~~~ 317 (318)
.-...+|+.||++|+++.
T Consensus 548 --SQ~~Asfs~Dgk~IVs~s 565 (712)
T KOG0283|consen 548 --SQISASFSSDGKHIVSAS 565 (712)
T ss_pred --cceeeeEccCCCEEEEee
Confidence 235779999999999874
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.3e-25 Score=189.54 Aligned_cols=248 Identities=19% Similarity=0.227 Sum_probs=187.6
Q ss_pred ccceEEeeCCCceeEeecCCCCCCCceecchhcccccccc---------------ceee-eecccccCCCCcccccccCC
Q 021036 17 THPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLH---------------SLAV-AWSPVLRLSSKKYPVPQNGS 80 (318)
Q Consensus 17 ~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~-~w~p~~~~~~~~~~v~~~~~ 80 (318)
.+.++..+..+.+++|+..+.+|+.++.+. |.+...... +..+ +-+....++.|.+++.+++.
T Consensus 384 d~~~~~Sga~~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~ 462 (888)
T KOG0306|consen 384 DSILLASGAGESIKIWNRDTLKCIRTITCG-YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISL 462 (888)
T ss_pred CceeeeecCCCcEEEEEccCcceeEEeccc-cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeee
Confidence 344555666789999999999999988763 322111100 0000 01111226689999999999
Q ss_pred CCCccEEEEecCCCcEEEEEccCCccccccccccCCce-eEE-----eeeccccccEEEEEeeeecCCCCCCCcEEEEEe
Q 021036 81 SNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTA-VLI-----GLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS 154 (318)
Q Consensus 81 s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~ 154 (318)
+|++..+++|+.|.+|++||..--.. .+.+. +.+ +.+ .-.+.|.|+++ +|+|++|+.+-
T Consensus 463 ~pD~~g~vT~saDktVkfWdf~l~~~-------~~gt~~k~lsl~~~rtL-el~ddvL~v~~-------Spdgk~LaVsL 527 (888)
T KOG0306|consen 463 SPDNKGFVTGSADKTVKFWDFKLVVS-------VPGTQKKVLSLKHTRTL-ELEDDVLCVSV-------SPDGKLLAVSL 527 (888)
T ss_pred cCCCCceEEecCCcEEEEEeEEEEec-------cCcccceeeeeccceEE-eccccEEEEEE-------cCCCcEEEEEe
Confidence 99999999999999999999863110 00001 111 112 23578999999 99999999999
Q ss_pred CCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeE
Q 021036 155 SDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDK 234 (318)
Q Consensus 155 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 234 (318)
-|.+|++|-+++.+..-.+-+|.. ||.++.++ ||+++++||+.|..|++|-+| -+. +
T Consensus 528 LdnTVkVyflDtlKFflsLYGHkL--------------PV~smDIS-----~DSklivTgSADKnVKiWGLd--FGD--C 584 (888)
T KOG0306|consen 528 LDNTVKVYFLDTLKFFLSLYGHKL--------------PVLSMDIS-----PDSKLIVTGSADKNVKIWGLD--FGD--C 584 (888)
T ss_pred ccCeEEEEEecceeeeeeeccccc--------------ceeEEecc-----CCcCeEEeccCCCceEEeccc--cch--h
Confidence 999999999998877766665554 99999999 999999999999999999555 444 4
Q ss_pred eeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEE
Q 021036 235 VGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVA 314 (318)
Q Consensus 235 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~ 314 (318)
-.++.+|...|.++.|-|...++.+++.|+.|+-||-..-...+ .+.+|...|++++.+|+|.+++
T Consensus 585 HKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq--------------~L~~H~~ev~cLav~~~G~~vv 650 (888)
T KOG0306|consen 585 HKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQ--------------KLDGHHSEVWCLAVSPNGSFVV 650 (888)
T ss_pred hhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhhe--------------eeccchheeeeeEEcCCCCeEE
Confidence 56788999999999999999999999999999999976533221 3455777999999999999999
Q ss_pred EEe
Q 021036 315 MVQ 317 (318)
Q Consensus 315 ~~~ 317 (318)
++.
T Consensus 651 s~s 653 (888)
T KOG0306|consen 651 SSS 653 (888)
T ss_pred ecc
Confidence 874
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-26 Score=180.57 Aligned_cols=171 Identities=18% Similarity=0.210 Sum_probs=146.1
Q ss_pred cccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEE
Q 021036 72 KYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLV 151 (318)
Q Consensus 72 ~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~ 151 (318)
...+-|..|||+|++|++|+.||-|.+|++.+|+.-... ..+....+.-+.++|.|++| +.+.+.|+
T Consensus 213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDL------kYQAqd~fMMmd~aVlci~F-------SRDsEMlA 279 (508)
T KOG0275|consen 213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDL------KYQAQDNFMMMDDAVLCISF-------SRDSEMLA 279 (508)
T ss_pred ccchhheeeCCCCceEeeccccceeeeehhccchhhhhh------hhhhhcceeecccceEEEee-------cccHHHhh
Confidence 446778889999999999999999999999987632100 01112334567899999999 89999999
Q ss_pred EEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCe
Q 021036 152 TGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNK 231 (318)
Q Consensus 152 s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~ 231 (318)
+|+.||.|++|.+++|.++..+. .+|...|+++.|+ .|+..+++++.|.++++- .+..++
T Consensus 280 sGsqDGkIKvWri~tG~ClRrFd-------------rAHtkGvt~l~FS-----rD~SqiLS~sfD~tvRiH--GlKSGK 339 (508)
T KOG0275|consen 280 SGSQDGKIKVWRIETGQCLRRFD-------------RAHTKGVTCLSFS-----RDNSQILSASFDQTVRIH--GLKSGK 339 (508)
T ss_pred ccCcCCcEEEEEEecchHHHHhh-------------hhhccCeeEEEEc-----cCcchhhcccccceEEEe--ccccch
Confidence 99999999999999999988776 3455699999999 999999999999999998 677887
Q ss_pred eeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCcee
Q 021036 232 FDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLS 277 (318)
Q Consensus 232 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 277 (318)
.+.++++|...|+.+.|.++|+.+++++.||+|++|+.++..+.
T Consensus 340 --~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~ 383 (508)
T KOG0275|consen 340 --CLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECL 383 (508)
T ss_pred --hHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhh
Confidence 78899999999999999999999999999999999999875543
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.8e-24 Score=187.92 Aligned_cols=206 Identities=15% Similarity=0.123 Sum_probs=145.9
Q ss_pred eEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCC-ccEEEEecCCCcEEE
Q 021036 20 TVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNW-FSILAVGGRSGKVSL 98 (318)
Q Consensus 20 ~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~-~~~l~~g~~dg~i~i 98 (318)
.++++.+....+|++..+.....+........ .+...+.+|..+|.+++|+|+ +++|++|+.||+|+|
T Consensus 33 ~ia~n~~~~A~~w~~~gGG~~gvI~L~~~~r~-----------~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrI 101 (568)
T PTZ00420 33 GIACSSGFVAVPWEVEGGGLIGAIRLENQMRK-----------PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRV 101 (568)
T ss_pred eEeeCCCeEEEEEEcCCCCceeEEEeeecCCC-----------ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEE
Confidence 35556666666777665554333332111100 011234566777777777775 689999999999999
Q ss_pred EEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcE-EEEEeCCCcEEEEECCCcceeeeecccc
Q 021036 99 WRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVL-LVTGSSDGSVRIWDGYIQELQKSAEAHC 177 (318)
Q Consensus 99 w~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~-l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 177 (318)
|++.++.... .....++..+.+|...|.+++| +|++.. |++++.|++|++||+++++....+.
T Consensus 102 WDi~t~~~~~------~~i~~p~~~L~gH~~~V~sVaf-------~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~--- 165 (568)
T PTZ00420 102 WEIPHNDESV------KEIKDPQCILKGHKKKISIIDW-------NPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN--- 165 (568)
T ss_pred EECCCCCccc------cccccceEEeecCCCcEEEEEE-------CCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe---
Confidence 9997642100 0001234567899999999999 776654 5789999999999999887655443
Q ss_pred cccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeE-----EEEcC
Q 021036 178 VPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTG-----LAWAF 252 (318)
Q Consensus 178 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~-----~~~~~ 252 (318)
+...|.+++|+ |+|.+|++++.|+.|++| |.++++ .+.++.+|.+.+.. ..|++
T Consensus 166 ------------~~~~V~Slsws-----pdG~lLat~s~D~~IrIw--D~Rsg~--~i~tl~gH~g~~~s~~v~~~~fs~ 224 (568)
T PTZ00420 166 ------------MPKKLSSLKWN-----IKGNLLSGTCVGKHMHII--DPRKQE--IASSFHIHDGGKNTKNIWIDGLGG 224 (568)
T ss_pred ------------cCCcEEEEEEC-----CCCCEEEEEecCCEEEEE--ECCCCc--EEEEEecccCCceeEEEEeeeEcC
Confidence 12378999999 999999999999999999 666766 56778889876543 23568
Q ss_pred CCCEEEEecCCC----cEEEEEecC
Q 021036 253 DGCCLYSCSQDN----FVRSWIFHG 273 (318)
Q Consensus 253 ~~~~l~s~~~d~----~v~iwd~~~ 273 (318)
++.+|++++.|+ +|+|||++.
T Consensus 225 d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 225 DDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred CCCEEEEEEcCCCCccEEEEEECCC
Confidence 888999887774 799999985
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-24 Score=185.09 Aligned_cols=229 Identities=21% Similarity=0.235 Sum_probs=179.2
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEE
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVS 97 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~ 97 (318)
.-.++.+....+.+|+..+++..+..... .+ .++.+.|++++ .+|++|..+|.|.
T Consensus 188 ~n~laValg~~vylW~~~s~~v~~l~~~~----~~---~vtSv~ws~~G------------------~~LavG~~~g~v~ 242 (484)
T KOG0305|consen 188 ANVLAVALGQSVYLWSASSGSVTELCSFG----EE---LVTSVKWSPDG------------------SHLAVGTSDGTVQ 242 (484)
T ss_pred CCeEEEEecceEEEEecCCCceEEeEecC----CC---ceEEEEECCCC------------------CEEEEeecCCeEE
Confidence 33566677778999999988754444331 22 25568888888 9999999999999
Q ss_pred EEEccCCccccccccccCCceeEEeeecc-ccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeee-ecc
Q 021036 98 LWRICVPKCYSVEDCKVPTTAVLIGLFQA-HNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKS-AEA 175 (318)
Q Consensus 98 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~-~~~ 175 (318)
|||..+. +.++.+.+ |...|-+++| . +..+.+|+.|+.|..+|++..+.... +
T Consensus 243 iwD~~~~--------------k~~~~~~~~h~~rvg~laW-------~--~~~lssGsr~~~I~~~dvR~~~~~~~~~-- 297 (484)
T KOG0305|consen 243 IWDVKEQ--------------KKTRTLRGSHASRVGSLAW-------N--SSVLSSGSRDGKILNHDVRISQHVVSTL-- 297 (484)
T ss_pred EEehhhc--------------cccccccCCcCceeEEEec-------c--CceEEEecCCCcEEEEEEecchhhhhhh--
Confidence 9999874 45567777 9999999999 4 66799999999999999998765443 3
Q ss_pred cccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCC-C
Q 021036 176 HCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFD-G 254 (318)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~ 254 (318)
.+|...|..+.|+ +++.+||+|+.|+.+.||| ..... +...+..|.+.|.+++|+|- .
T Consensus 298 ------------~~H~qeVCgLkws-----~d~~~lASGgnDN~~~Iwd--~~~~~--p~~~~~~H~aAVKA~awcP~q~ 356 (484)
T KOG0305|consen 298 ------------QGHRQEVCGLKWS-----PDGNQLASGGNDNVVFIWD--GLSPE--PKFTFTEHTAAVKALAWCPWQS 356 (484)
T ss_pred ------------hcccceeeeeEEC-----CCCCeeccCCCccceEecc--CCCcc--ccEEEeccceeeeEeeeCCCcc
Confidence 3455589999999 9999999999999999994 44433 77788999999999999994 5
Q ss_pred CEEEEe--cCCCcEEEEEecCCcee----------eeecCCCCCCcc---c----------------cccCCCcceeeeE
Q 021036 255 CCLYSC--SQDNFVRSWIFHGNSLS----------QVSIPTNTPGLQ---S----------------CTDLPDAFVSCLG 303 (318)
Q Consensus 255 ~~l~s~--~~d~~v~iwd~~~~~~~----------~~~~~~~~~~~~---~----------------~~~~~~h~~~v~~ 303 (318)
..||+| +.|+.|++||..++... .+.+.+....+. | ...+.+|..+|..
T Consensus 357 ~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~ 436 (484)
T KOG0305|consen 357 GLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLY 436 (484)
T ss_pred CceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEE
Confidence 688887 47999999999875543 333444333332 1 1335699999999
Q ss_pred EEEcCCCcEEEEEe
Q 021036 304 MAVSPGNLVVAMVQ 317 (318)
Q Consensus 304 v~~sp~~~~l~~~~ 317 (318)
++++|||..+++|-
T Consensus 437 la~SPdg~~i~t~a 450 (484)
T KOG0305|consen 437 LALSPDGETIVTGA 450 (484)
T ss_pred EEECCCCCEEEEec
Confidence 99999999999974
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-25 Score=181.47 Aligned_cols=239 Identities=13% Similarity=0.116 Sum_probs=176.0
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCc
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGK 95 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~ 95 (318)
+...+++|+.|..|++|++..+++.. + +.+.+..++++++++.++++.+++.+.|+.
T Consensus 186 ~sdtlatgg~Dr~Ik~W~v~~~k~~~-~----------------------~tLaGs~g~it~~d~d~~~~~~iAas~d~~ 242 (459)
T KOG0288|consen 186 NSDTLATGGSDRIIKLWNVLGEKSEL-I----------------------STLAGSLGNITSIDFDSDNKHVIAASNDKN 242 (459)
T ss_pred Ccchhhhcchhhhhhhhhcccchhhh-h----------------------hhhhccCCCcceeeecCCCceEEeecCCCc
Confidence 34567999999999999987766211 1 123344466777777777799999999999
Q ss_pred EEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecc
Q 021036 96 VSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEA 175 (318)
Q Consensus 96 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 175 (318)
+++|++.. .+...++.+|.+.|+++.| ......+++|+.|.++++||+....+.+++..
T Consensus 243 ~r~Wnvd~--------------~r~~~TLsGHtdkVt~ak~-------~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~ 301 (459)
T KOG0288|consen 243 LRLWNVDS--------------LRLRHTLSGHTDKVTAAKF-------KLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP 301 (459)
T ss_pred eeeeeccc--------------hhhhhhhcccccceeeehh-------hccccceeeccccchhhhhhhhhhheeccccc
Confidence 99999998 4567889999999999999 55555599999999999999998776655332
Q ss_pred cccccccce------------------------eeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCe
Q 021036 176 HCVPFSLLK------------------------EVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNK 231 (318)
Q Consensus 176 ~~~~~~~~~------------------------~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~ 231 (318)
......... .....-.+.|+++..+ +++..+++++.|.++.+. |.++..
T Consensus 302 ~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls-----~~g~~lLsssRDdtl~vi--DlRt~e 374 (459)
T KOG0288|consen 302 GSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLS-----MDGLELLSSSRDDTLKVI--DLRTKE 374 (459)
T ss_pred cccccceEecceeeeecccccceEEEeccCCceeeEeecCcceeeEeec-----cCCeEEeeecCCCceeee--eccccc
Confidence 211111100 1111234478999998 899999999999999998 666665
Q ss_pred eeEeeeeec--ccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCC
Q 021036 232 FDKVGSYNA--HDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPG 309 (318)
Q Consensus 232 ~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 309 (318)
.....+-.+ .....+.+.|||++.|+++||.||.|+||++.++++....-.+..+ ..|++++|+|.
T Consensus 375 I~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~------------~aI~s~~W~~s 442 (459)
T KOG0288|consen 375 IRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSN------------AAITSLSWNPS 442 (459)
T ss_pred EEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCC------------cceEEEEEcCC
Confidence 333322222 1234789999999999999999999999999998887543332211 27999999999
Q ss_pred CcEEEEEe
Q 021036 310 NLVVAMVQ 317 (318)
Q Consensus 310 ~~~l~~~~ 317 (318)
|..|+++.
T Consensus 443 G~~Llsad 450 (459)
T KOG0288|consen 443 GSGLLSAD 450 (459)
T ss_pred Cchhhccc
Confidence 99988764
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-23 Score=164.07 Aligned_cols=232 Identities=12% Similarity=0.137 Sum_probs=173.0
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecC--CCc
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGR--SGK 95 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~--dg~ 95 (318)
..++++++|.+++++|..+++++..+..+.|+... +.|-... +.++.++. |.+
T Consensus 27 ~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~-------~~Fth~~------------------~~~i~sStk~d~t 81 (311)
T KOG1446|consen 27 LLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDL-------ACFTHHS------------------NTVIHSSTKEDDT 81 (311)
T ss_pred CEEEEecCCCeEEEEEcCCCceeeEeecccccccE-------EEEecCC------------------ceEEEccCCCCCc
Confidence 34577899999999999999999998887665433 3333333 44444444 889
Q ss_pred EEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecc
Q 021036 96 VSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEA 175 (318)
Q Consensus 96 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 175 (318)
||.-++.++ +.++.+.||...|++|+. +|.++.+++++.|++|++||++..++...+..
T Consensus 82 IryLsl~dN--------------kylRYF~GH~~~V~sL~~-------sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~ 140 (311)
T KOG1446|consen 82 IRYLSLHDN--------------KYLRYFPGHKKRVNSLSV-------SPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL 140 (311)
T ss_pred eEEEEeecC--------------ceEEEcCCCCceEEEEEe-------cCCCCeEEecccCCeEEeeEecCCCCceEEec
Confidence 999999984 577899999999999999 88889999999999999999997666554433
Q ss_pred cccccccce-------------------------------eeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEee
Q 021036 176 HCVPFSLLK-------------------------------EVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWK 224 (318)
Q Consensus 176 ~~~~~~~~~-------------------------------~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~ 224 (318)
...|..... .+........+.|.|+ |+|+.++.+...+.+++.
T Consensus 141 ~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS-----~dGK~iLlsT~~s~~~~l- 214 (311)
T KOG1446|consen 141 SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFS-----PDGKSILLSTNASFIYLL- 214 (311)
T ss_pred CCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEc-----CCCCEEEEEeCCCcEEEE-
Confidence 222111100 0111234567888898 999999999999999997
Q ss_pred eccCCCeeeEeeeeecccCce---eEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceee
Q 021036 225 CDISCNKFDKVGSYNAHDQVV---TGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSC 301 (318)
Q Consensus 225 ~~~~~~~~~~~~~~~~h~~~v---~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 301 (318)
|.-++. ...++.++...- -...|+||++++++|+.||+|.+|+++++........+ +.+++
T Consensus 215 -DAf~G~--~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-------------~~~~~ 278 (311)
T KOG1446|consen 215 -DAFDGT--VKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-------------NGGPV 278 (311)
T ss_pred -EccCCc--EeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-------------CCCCc
Confidence 666776 555666554322 46789999999999999999999999887765443332 23478
Q ss_pred eEEEEcCCCcEEEEEe
Q 021036 302 LGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 302 ~~v~~sp~~~~l~~~~ 317 (318)
.++.|+|.-.+++++.
T Consensus 279 ~~~~fnP~~~mf~sa~ 294 (311)
T KOG1446|consen 279 SCVRFNPRYAMFVSAS 294 (311)
T ss_pred cccccCCceeeeeecC
Confidence 8999999988888763
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.2e-25 Score=191.15 Aligned_cols=207 Identities=20% Similarity=0.268 Sum_probs=159.4
Q ss_pred CC-CCcccccccCCCCCccEEEEecCCCcEEEEEccCCcccccc-----------------------c------------
Q 021036 68 LS-SKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVE-----------------------D------------ 111 (318)
Q Consensus 68 ~~-~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~-----------------------~------------ 111 (318)
++ .|.++|.++.||++|+|||+|+.||.|+||.+...+....+ .
T Consensus 262 ~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~ 341 (712)
T KOG0283|consen 262 ISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK 341 (712)
T ss_pred cccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence 44 79999999999999999999999999999998762211100 0
Q ss_pred -----------cccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeeccccccc
Q 021036 112 -----------CKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPF 180 (318)
Q Consensus 112 -----------~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~ 180 (318)
..+.-..++++.+.+|.+.|.+|.| +.++ +|++++.|.+|+||++...+++..|.
T Consensus 342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSW-------SKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~------ 407 (712)
T KOG0283|consen 342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSW-------SKNN-FLLSSSMDKTVRLWHPGRKECLKVFS------ 407 (712)
T ss_pred ccCCccccCCCccccccccchhhhhccchhheeccc-------ccCC-eeEeccccccEEeecCCCcceeeEEe------
Confidence 0011124567788999999999999 6655 99999999999999999999998876
Q ss_pred ccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEe
Q 021036 181 SLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSC 260 (318)
Q Consensus 181 ~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 260 (318)
|..-|+|++|+ |-|.++|++|+-||+++|| ++...+ +..+..-..-|++++|.|+|++.+.|
T Consensus 408 ---------HndfVTcVaFn----PvDDryFiSGSLD~KvRiW--sI~d~~---Vv~W~Dl~~lITAvcy~PdGk~avIG 469 (712)
T KOG0283|consen 408 ---------HNDFVTCVAFN----PVDDRYFISGSLDGKVRLW--SISDKK---VVDWNDLRDLITAVCYSPDGKGAVIG 469 (712)
T ss_pred ---------cCCeeEEEEec----ccCCCcEeecccccceEEe--ecCcCe---eEeehhhhhhheeEEeccCCceEEEE
Confidence 45589999999 5788999999999999999 555543 44444455789999999999999999
Q ss_pred cCCCcEEEEEecCCceee---eecCCCCCCccccccCCCcceeeeEEEEcCCCc--EEEE
Q 021036 261 SQDNFVRSWIFHGNSLSQ---VSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNL--VVAM 315 (318)
Q Consensus 261 ~~d~~v~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~--~l~~ 315 (318)
+.+|.+++|++...++.. +..+... -..|. .|+++.|.|... +|+|
T Consensus 470 t~~G~C~fY~t~~lk~~~~~~I~~~~~K--------k~~~~-rITG~Q~~p~~~~~vLVT 520 (712)
T KOG0283|consen 470 TFNGYCRFYDTEGLKLVSDFHIRLHNKK--------KKQGK-RITGLQFFPGDPDEVLVT 520 (712)
T ss_pred EeccEEEEEEccCCeEEEeeeEeeccCc--------cccCc-eeeeeEecCCCCCeEEEe
Confidence 999999999998755532 2222111 11233 899999998433 5555
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-24 Score=169.42 Aligned_cols=256 Identities=18% Similarity=0.188 Sum_probs=183.6
Q ss_pred CCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeeccccc-CCCCcccccccCCCCCccEEEEecCC
Q 021036 15 SNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLR-LSSKKYPVPQNGSSNWFSILAVGGRS 93 (318)
Q Consensus 15 ~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~-~~~~~~~v~~~~~s~~~~~l~~g~~d 93 (318)
.+...++|||.|..|+|.|++..--.. ...+....+. -+-+|.-| +..|..+|++++|.|...+|++|+.|
T Consensus 122 ~DG~lvATGsaD~SIKildvermlaks--~~~em~~~~~------qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD 193 (430)
T KOG0640|consen 122 PDGSLVATGSADASIKILDVERMLAKS--KPKEMISGDT------QARHPVIRTLYDHVDEVNDLDFHPRETILISGSRD 193 (430)
T ss_pred CCCcEEEccCCcceEEEeehhhhhhhc--chhhhccCCc------ccCCceEeehhhccCcccceeecchhheEEeccCC
Confidence 345557999999999999998421100 0000000000 11123323 55688889999999999999999999
Q ss_pred CcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeee
Q 021036 94 GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSA 173 (318)
Q Consensus 94 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 173 (318)
++|+++|+...... +..+.+ ....+|.++.| .|.|++|+.|....++++||+.+-++...-
T Consensus 194 ~tvKlFDfsK~saK-----------rA~K~~-qd~~~vrsiSf-------HPsGefllvgTdHp~~rlYdv~T~Qcfvsa 254 (430)
T KOG0640|consen 194 NTVKLFDFSKTSAK-----------RAFKVF-QDTEPVRSISF-------HPSGEFLLVGTDHPTLRLYDVNTYQCFVSA 254 (430)
T ss_pred CeEEEEecccHHHH-----------HHHHHh-hccceeeeEee-------cCCCceEEEecCCCceeEEeccceeEeeec
Confidence 99999999864321 112222 23568999999 899999999999999999999998877654
Q ss_pred cccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeee-ccc-CceeEEEEc
Q 021036 174 EAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYN-AHD-QVVTGLAWA 251 (318)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-~h~-~~v~~~~~~ 251 (318)
... ..|...|+++.++ +.+++.++++.||.|++| |--..+ ++.++. +|. ..|.+..|.
T Consensus 255 nPd-----------~qht~ai~~V~Ys-----~t~~lYvTaSkDG~Iklw--DGVS~r--Cv~t~~~AH~gsevcSa~Ft 314 (430)
T KOG0640|consen 255 NPD-----------DQHTGAITQVRYS-----STGSLYVTASKDGAIKLW--DGVSNR--CVRTIGNAHGGSEVCSAVFT 314 (430)
T ss_pred Ccc-----------cccccceeEEEec-----CCccEEEEeccCCcEEee--ccccHH--HHHHHHhhcCCceeeeEEEc
Confidence 422 3477899999999 999999999999999999 444444 555553 465 468999999
Q ss_pred CCCCEEEEecCCCcEEEEEecCCceeeeecCC----------------CCCCc--------c-ccccC----------CC
Q 021036 252 FDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPT----------------NTPGL--------Q-SCTDL----------PD 296 (318)
Q Consensus 252 ~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~----------------~~~~~--------~-~~~~~----------~~ 296 (318)
.+|+++++.+.|..+++|.+.++......... ...++ . ++++. .+
T Consensus 315 kn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slg 394 (430)
T KOG0640|consen 315 KNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLG 394 (430)
T ss_pred cCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccC
Confidence 99999999999999999999876543221110 00000 0 12221 28
Q ss_pred cceeeeEEEEcCCCcEEEEEe
Q 021036 297 AFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 297 h~~~v~~v~~sp~~~~l~~~~ 317 (318)
|.+.++.+.-+|.+.-+.+|.
T Consensus 395 Hn~a~R~i~HSP~~p~FmTcs 415 (430)
T KOG0640|consen 395 HNGAVRWIVHSPVEPAFMTCS 415 (430)
T ss_pred CCCCceEEEeCCCCCceeeec
Confidence 999999999999988887775
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.2e-25 Score=170.98 Aligned_cols=210 Identities=15% Similarity=0.203 Sum_probs=161.6
Q ss_pred CCCCcccccccCCCCCccEEEEecCCCcEEEEEccCC----ccccccccccCCceeEEeeeccccccEEEEEeeeecCCC
Q 021036 68 LSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVP----KCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDS 143 (318)
Q Consensus 68 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~----~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~ 143 (318)
+..|..++.+.+|+++|.++|+|+.|.+|+|.|++.. +......+........++++-.|.++|+++.|
T Consensus 108 lt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~F------- 180 (430)
T KOG0640|consen 108 LTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDF------- 180 (430)
T ss_pred EeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceee-------
Confidence 5679999999999999999999999999999999731 11111122222223578889999999999999
Q ss_pred CCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEe
Q 021036 144 SNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLW 223 (318)
Q Consensus 144 ~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw 223 (318)
.|....|++|+.|++|+++|+......+.++.-+. ..+|.++.|+ |.|+++++|.....+++|
T Consensus 181 HPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd------------~~~vrsiSfH-----PsGefllvgTdHp~~rlY 243 (430)
T KOG0640|consen 181 HPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQD------------TEPVRSISFH-----PSGEFLLVGTDHPTLRLY 243 (430)
T ss_pred cchhheEEeccCCCeEEEEecccHHHHHHHHHhhc------------cceeeeEeec-----CCCceEEEecCCCceeEE
Confidence 78888999999999999999986544443333221 2389999999 999999999999999999
Q ss_pred eeccCCCeeeEe-eeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCcee-eeecCCCCCCccccccCCCcceee
Q 021036 224 KCDISCNKFDKV-GSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLS-QVSIPTNTPGLQSCTDLPDAFVSC 301 (318)
Q Consensus 224 ~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v 301 (318)
| +.+.++-.. .--.+|.+.|+++.+++.|++.++++.||.|+|||--++.+. .+.....+ ..|
T Consensus 244 d--v~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~g-------------sev 308 (430)
T KOG0640|consen 244 D--VNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGG-------------SEV 308 (430)
T ss_pred e--ccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCC-------------cee
Confidence 5 445442111 122469999999999999999999999999999996654443 33322222 378
Q ss_pred eEEEEcCCCcEEEEE
Q 021036 302 LGMAVSPGNLVVAMV 316 (318)
Q Consensus 302 ~~v~~sp~~~~l~~~ 316 (318)
.+..|..+|+||++.
T Consensus 309 cSa~Ftkn~kyiLsS 323 (430)
T KOG0640|consen 309 CSAVFTKNGKYILSS 323 (430)
T ss_pred eeEEEccCCeEEeec
Confidence 999999999999874
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-25 Score=168.44 Aligned_cols=218 Identities=17% Similarity=0.175 Sum_probs=174.9
Q ss_pred CCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCC
Q 021036 15 SNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSG 94 (318)
Q Consensus 15 ~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg 94 (318)
.|.-..++++.|-+.++||.-++..+..+. |+.. +..++|+.+. ++|++|+.+.
T Consensus 69 ~na~~aasaaadftakvw~a~tgdelhsf~-----hkhi---vk~~af~~ds------------------~~lltgg~ek 122 (334)
T KOG0278|consen 69 KNATRAASAAADFTAKVWDAVTGDELHSFE-----HKHI---VKAVAFSQDS------------------NYLLTGGQEK 122 (334)
T ss_pred chhhhhhhhcccchhhhhhhhhhhhhhhhh-----hhhe---eeeEEecccc------------------hhhhccchHH
Confidence 344556888899999999998887655543 4444 2336666666 9999999999
Q ss_pred cEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeec
Q 021036 95 KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAE 174 (318)
Q Consensus 95 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 174 (318)
.+||||++..+. +...+.+|.+.|..+.| ....+.|++++.|++||+||.++++.++.+.
T Consensus 123 llrvfdln~p~A-------------pp~E~~ghtg~Ir~v~w-------c~eD~~iLSSadd~tVRLWD~rTgt~v~sL~ 182 (334)
T KOG0278|consen 123 LLRVFDLNRPKA-------------PPKEISGHTGGIRTVLW-------CHEDKCILSSADDKTVRLWDHRTGTEVQSLE 182 (334)
T ss_pred HhhhhhccCCCC-------------CchhhcCCCCcceeEEE-------eccCceEEeeccCCceEEEEeccCcEEEEEe
Confidence 999999998653 45678999999999999 7777889999999999999999999998876
Q ss_pred ccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCC
Q 021036 175 AHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDG 254 (318)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 254 (318)
... +|+++.++ ++|+++.++. .+.|.+| |..+-. ++..++ -...|.+...+|+.
T Consensus 183 ~~s---------------~VtSlEvs-----~dG~ilTia~-gssV~Fw--daksf~--~lKs~k-~P~nV~SASL~P~k 236 (334)
T KOG0278|consen 183 FNS---------------PVTSLEVS-----QDGRILTIAY-GSSVKFW--DAKSFG--LLKSYK-MPCNVESASLHPKK 236 (334)
T ss_pred cCC---------------CCcceeec-----cCCCEEEEec-CceeEEe--cccccc--ceeecc-CccccccccccCCC
Confidence 544 78999999 8998877765 6789999 544433 454444 34568899999999
Q ss_pred CEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 255 CCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 255 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
.++++|++|..++.||..++...... ..+|.++|-+|.|+|||..-|+|.
T Consensus 237 ~~fVaGged~~~~kfDy~TgeEi~~~-------------nkgh~gpVhcVrFSPdGE~yAsGS 286 (334)
T KOG0278|consen 237 EFFVAGGEDFKVYKFDYNTGEEIGSY-------------NKGHFGPVHCVRFSPDGELYASGS 286 (334)
T ss_pred ceEEecCcceEEEEEeccCCceeeec-------------ccCCCCceEEEEECCCCceeeccC
Confidence 99999999999999999998766431 134778999999999999998874
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5e-25 Score=174.99 Aligned_cols=238 Identities=12% Similarity=0.088 Sum_probs=168.2
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceecchhccccccccc--------------eeeeecccc---cCCCCcccccccCC
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHS--------------LAVAWSPVL---RLSSKKYPVPQNGS 80 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~w~p~~---~~~~~~~~v~~~~~ 80 (318)
..+++||.||.|+|||+.+..|...+.++ .+.+-.. +.-.|.-.+ +..-....+.+++.
T Consensus 80 s~~aSGs~DG~VkiWnlsqR~~~~~f~AH----~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh 155 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLSQRECIRTFKAH----EGLVRGICVTQTSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDH 155 (433)
T ss_pred hhhhccccCceEEEEehhhhhhhheeecc----cCceeeEEecccceEEecCCcceeeeeccCCcceeeecccccccccc
Confidence 34789999999999999998887776653 2221110 000121111 00001122333333
Q ss_pred CCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEE
Q 021036 81 SNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVR 160 (318)
Q Consensus 81 s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~ 160 (318)
......++|+|. .|-|||.+. ..+++.+..-.+.|.++.| ++-....|++|+.|+.|.
T Consensus 156 ~~~~~~FaTcGe--~i~IWD~~R--------------~~Pv~smswG~Dti~svkf------NpvETsILas~~sDrsIv 213 (433)
T KOG0268|consen 156 HRKNSVFATCGE--QIDIWDEQR--------------DNPVSSMSWGADSISSVKF------NPVETSILASCASDRSIV 213 (433)
T ss_pred ccccccccccCc--eeeeccccc--------------CCccceeecCCCceeEEec------CCCcchheeeeccCCceE
Confidence 333444444432 244444433 2355666666778899999 233446788888999999
Q ss_pred EEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeec
Q 021036 161 IWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNA 240 (318)
Q Consensus 161 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 240 (318)
+||+++++.++.+.... .-+.|+|+ |++..|.+|+.|..++.| |++... .++...++
T Consensus 214 LyD~R~~~Pl~KVi~~m---------------RTN~Iswn-----PeafnF~~a~ED~nlY~~--DmR~l~-~p~~v~~d 270 (433)
T KOG0268|consen 214 LYDLRQASPLKKVILTM---------------RTNTICWN-----PEAFNFVAANEDHNLYTY--DMRNLS-RPLNVHKD 270 (433)
T ss_pred EEecccCCccceeeeec---------------cccceecC-----ccccceeeccccccceeh--hhhhhc-ccchhhcc
Confidence 99999998877654322 34678999 899999999999999999 666554 37788899
Q ss_pred ccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 241 HDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 241 h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
|...|.+++|+|.|+-|++||.|.+|+||.++.+....+....... .|.+|.||.|.+|+++|.
T Consensus 271 hvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq-------------~V~~Vk~S~Dskyi~SGS 334 (433)
T KOG0268|consen 271 HVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQ-------------HVFCVKYSMDSKYIISGS 334 (433)
T ss_pred cceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhh-------------eeeEEEEeccccEEEecC
Confidence 9999999999999999999999999999999987777666655554 899999999999999984
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-23 Score=159.36 Aligned_cols=218 Identities=20% Similarity=0.205 Sum_probs=172.7
Q ss_pred CCCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEec
Q 021036 12 MKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGG 91 (318)
Q Consensus 12 ~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~ 91 (318)
..+.+...+++++.|++|++||+..+++...+... ..... +.|+|++ ++++.+.
T Consensus 72 w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~-----~eni~---i~wsp~g------------------~~~~~~~ 125 (313)
T KOG1407|consen 72 WDPKHPDLFATASGDKTIRIWDIRSGKCTARIETK-----GENIN---ITWSPDG------------------EYIAVGN 125 (313)
T ss_pred eCCCCCcceEEecCCceEEEEEeccCcEEEEeecc-----CcceE---EEEcCCC------------------CEEEEec
Confidence 44556677899999999999999999987776542 22222 8999998 9999999
Q ss_pred CCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceee
Q 021036 92 RSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQK 171 (318)
Q Consensus 92 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~ 171 (318)
.|..|.+.|.++.+ ..... ...-.++-++| ...+++|+....-|+|.|......+.+.
T Consensus 126 kdD~it~id~r~~~--------------~~~~~-~~~~e~ne~~w-------~~~nd~Fflt~GlG~v~ILsypsLkpv~ 183 (313)
T KOG1407|consen 126 KDDRITFIDARTYK--------------IVNEE-QFKFEVNEISW-------NNSNDLFFLTNGLGCVEILSYPSLKPVQ 183 (313)
T ss_pred CcccEEEEEecccc--------------eeehh-cccceeeeeee-------cCCCCEEEEecCCceEEEEecccccccc
Confidence 99999999998743 22222 23456788999 5666777777777999999998888888
Q ss_pred eecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEc
Q 021036 172 SAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWA 251 (318)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 251 (318)
.++.|.. ...|+.|+ |+|++||+|+.|-.+.+||+ ...- ++..+..+.-+|..+.|+
T Consensus 184 si~AH~s--------------nCicI~f~-----p~GryfA~GsADAlvSLWD~--~ELi--C~R~isRldwpVRTlSFS 240 (313)
T KOG1407|consen 184 SIKAHPS--------------NCICIEFD-----PDGRYFATGSADALVSLWDV--DELI--CERCISRLDWPVRTLSFS 240 (313)
T ss_pred ccccCCc--------------ceEEEEEC-----CCCceEeeccccceeeccCh--hHhh--hheeeccccCceEEEEec
Confidence 7776653 66778888 99999999999999999954 3333 566778899999999999
Q ss_pred CCCCEEEEecCCCcEEEEEecCCce-eeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 252 FDGCCLYSCSQDNFVRSWIFHGNSL-SQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 252 ~~~~~l~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
.+|++||++++|..|-|=++.+|.. .+++ +.++...|+|+|...+||-+
T Consensus 241 ~dg~~lASaSEDh~IDIA~vetGd~~~eI~----------------~~~~t~tVAWHPk~~LLAyA 290 (313)
T KOG1407|consen 241 HDGRMLASASEDHFIDIAEVETGDRVWEIP----------------CEGPTFTVAWHPKRPLLAYA 290 (313)
T ss_pred cCcceeeccCccceEEeEecccCCeEEEee----------------ccCCceeEEecCCCceeeEE
Confidence 9999999999999999988888654 4443 23467899999998888754
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.7e-24 Score=168.06 Aligned_cols=168 Identities=20% Similarity=0.253 Sum_probs=146.8
Q ss_pred cCCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCC
Q 021036 67 RLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNP 146 (318)
Q Consensus 67 ~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~ 146 (318)
.+..|..+|+++..+|+.+++++|+.|..-.+|++.+++ ....+.+|.+.|+++.| +.+
T Consensus 59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge--------------~~~eltgHKDSVt~~~F-------shd 117 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE--------------FAGELTGHKDSVTCCSF-------SHD 117 (399)
T ss_pred ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc--------------ceeEecCCCCceEEEEE-------ccC
Confidence 366788888888888888999999999999999999864 56788999999999999 999
Q ss_pred CcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeec
Q 021036 147 QVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCD 226 (318)
Q Consensus 147 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~ 226 (318)
|.+|+||+.+|.|+||+..++.....+..... .+.-+.|+ |.+..|+.|+.||.+-+|.++
T Consensus 118 gtlLATGdmsG~v~v~~~stg~~~~~~~~e~~--------------dieWl~WH-----p~a~illAG~~DGsvWmw~ip 178 (399)
T KOG0296|consen 118 GTLLATGDMSGKVLVFKVSTGGEQWKLDQEVE--------------DIEWLKWH-----PRAHILLAGSTDGSVWMWQIP 178 (399)
T ss_pred ceEEEecCCCccEEEEEcccCceEEEeecccC--------------ceEEEEec-----ccccEEEeecCCCcEEEEECC
Confidence 99999999999999999999988777652222 56778888 899999999999999999544
Q ss_pred cCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceee
Q 021036 227 ISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQ 278 (318)
Q Consensus 227 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~ 278 (318)
.+. ..+.+.+|..++++=.|.|+|+.++++..||+|++|++.++....
T Consensus 179 --~~~--~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~ 226 (399)
T KOG0296|consen 179 --SQA--LCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLH 226 (399)
T ss_pred --Ccc--eeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeE
Confidence 433 566788999999999999999999999999999999999986554
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-24 Score=168.04 Aligned_cols=200 Identities=21% Similarity=0.276 Sum_probs=158.1
Q ss_pred ceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEE
Q 021036 19 PTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSL 98 (318)
Q Consensus 19 ~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i 98 (318)
.+.++|.|.+.+||.+++++|+..... |.+.|.++.|++++.++++++.|++..|
T Consensus 162 i~gtASADhTA~iWs~Esg~CL~~Y~G-------------------------H~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 162 ICGTASADHTARIWSLESGACLATYTG-------------------------HTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred ceeecccccceeEEeeccccceeeecc-------------------------cccceeeEEeccccceEEEccCCcchHH
Confidence 567899999999999999998666543 3344444445555599999999999999
Q ss_pred EEccC----Cc--ccc-------cc----c---------cccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEE
Q 021036 99 WRICV----PK--CYS-------VE----D---------CKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVT 152 (318)
Q Consensus 99 w~~~~----~~--~~~-------~~----~---------~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s 152 (318)
|...- ++ ... .+ + ...+.-..++..+.+|.+.|.+..| -..|+.+++
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dW-------L~gg~Q~vT 289 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDW-------LAGGQQMVT 289 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhh-------hcCcceeee
Confidence 97421 11 000 00 0 1111223567788999999999999 899999999
Q ss_pred EeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCee
Q 021036 153 GSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKF 232 (318)
Q Consensus 153 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~ 232 (318)
++.|.+..+||+++++.++.+.+|.. ..+.++-+ |..+++++.+.|.+.++||+ + ...
T Consensus 290 aSWDRTAnlwDVEtge~v~~LtGHd~--------------ELtHcstH-----ptQrLVvTsSrDtTFRLWDF--R-eaI 347 (481)
T KOG0300|consen 290 ASWDRTANLWDVETGEVVNILTGHDS--------------ELTHCSTH-----PTQRLVVTSSRDTTFRLWDF--R-EAI 347 (481)
T ss_pred eeccccceeeeeccCceeccccCcch--------------hccccccC-----CcceEEEEeccCceeEeccc--h-hhc
Confidence 99999999999999999988877665 77788888 99999999999999999954 4 233
Q ss_pred eEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecC
Q 021036 233 DKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 233 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 273 (318)
..+..|++|...|+++.|..+. .+++|+.|.+|++||+++
T Consensus 348 ~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrN 387 (481)
T KOG0300|consen 348 QSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRN 387 (481)
T ss_pred ceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeecc
Confidence 4678899999999999998876 589999999999999987
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.7e-24 Score=173.08 Aligned_cols=206 Identities=16% Similarity=0.264 Sum_probs=153.7
Q ss_pred CCCCCccceEEeeCCCceeEeecCCCCCCC-ceecch--hccccccccceeeeecccccCCCCcccccccCCCCCccEEE
Q 021036 12 MKDSNTHPTVAASKSKGNSITKIPSNCCLP-LITADQ--YASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILA 88 (318)
Q Consensus 12 ~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~ 88 (318)
+.......+++++.|+++.+||+....... .+.... .+|.+.+.. ++|+|.. ..+++
T Consensus 185 Wn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeD---V~~h~~h-----------------~~lF~ 244 (422)
T KOG0264|consen 185 WNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVED---VAWHPLH-----------------EDLFG 244 (422)
T ss_pred cccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceeh---hhccccc-----------------hhhhe
Confidence 334445668999999999999998754321 111111 124444333 6666655 68999
Q ss_pred EecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcc
Q 021036 89 VGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQE 168 (318)
Q Consensus 89 ~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 168 (318)
+++.|+.+.|||.+++. .+......+|.++|+|++|+|+ ++..|||||.|++|.+||+|+..
T Consensus 245 sv~dd~~L~iwD~R~~~------------~~~~~~~~ah~~~vn~~~fnp~------~~~ilAT~S~D~tV~LwDlRnL~ 306 (422)
T KOG0264|consen 245 SVGDDGKLMIWDTRSNT------------SKPSHSVKAHSAEVNCVAFNPF------NEFILATGSADKTVALWDLRNLN 306 (422)
T ss_pred eecCCCeEEEEEcCCCC------------CCCcccccccCCceeEEEeCCC------CCceEEeccCCCcEEEeechhcc
Confidence 99999999999999632 3455677899999999999443 45689999999999999999864
Q ss_pred -eeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCC----------CeeeEeee
Q 021036 169 -LQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISC----------NKFDKVGS 237 (318)
Q Consensus 169 -~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~----------~~~~~~~~ 237 (318)
++.++..| ...|..+.|+ |.....||+++.|+.+.+||+..-. +..+++..
T Consensus 307 ~~lh~~e~H--------------~dev~~V~WS----Ph~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~ 368 (422)
T KOG0264|consen 307 KPLHTFEGH--------------EDEVFQVEWS----PHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFI 368 (422)
T ss_pred cCceeccCC--------------CcceEEEEeC----CCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEE
Confidence 44555544 4589999999 3456799999999999999864322 22344555
Q ss_pred eecccCceeEEEEcCCCC-EEEEecCCCcEEEEEecC
Q 021036 238 YNAHDQVVTGLAWAFDGC-CLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 238 ~~~h~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~ 273 (318)
-.||...|..+.|+|... .|++.++|+.+.||++..
T Consensus 369 HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 369 HGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 678999999999999876 678899999999999864
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-23 Score=186.41 Aligned_cols=247 Identities=17% Similarity=0.099 Sum_probs=174.4
Q ss_pred ccceEEee--CCCceeEeecCCC-CCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCC
Q 021036 17 THPTVAAS--KSKGNSITKIPSN-CCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRS 93 (318)
Q Consensus 17 ~~~~~t~s--~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~d 93 (318)
...++||+ .|++++||+.+.- .+.......- ++ +......|.+.|.|+.|+++|++||+|++|
T Consensus 25 g~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l--~k------------~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 25 GVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENL--PK------------HLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred ceeEecCCccccccceeeccccccchhhhhhccc--ch------------hheeeccccCceeEEEECCCCCeEeeccCc
Confidence 34468888 8999999976541 1111111000 00 011233466777777777777999999999
Q ss_pred CcEEEEEccCC----ccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcce
Q 021036 94 GKVSLWRICVP----KCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQEL 169 (318)
Q Consensus 94 g~i~iw~~~~~----~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 169 (318)
+.|.||..... .+-........+..+....+.+|...|..++| +|++.+|++++.|++|.+|+..+.+.
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~W-------sp~~~~lvS~s~DnsViiwn~~tF~~ 163 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNW-------SPDDSLLVSVSLDNSVIIWNAKTFEL 163 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceecc-------CCCccEEEEecccceEEEEcccccee
Confidence 99999999841 00000001122334677889999999999999 89999999999999999999999988
Q ss_pred eeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeecc----------------------
Q 021036 170 QKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDI---------------------- 227 (318)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~---------------------- 227 (318)
...+.+|.. .|-.+.|+ |-|++||+-+.|++|++|...-
T Consensus 164 ~~vl~~H~s--------------~VKGvs~D-----P~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~R 224 (942)
T KOG0973|consen 164 LKVLRGHQS--------------LVKGVSWD-----PIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLR 224 (942)
T ss_pred eeeeecccc--------------cccceEEC-----CccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeee
Confidence 887776654 88899999 9999999999999999997210
Q ss_pred --------------------------CCCeeeEeeeeecccCceeEEEEcCC-----CC------------EEEEecCCC
Q 021036 228 --------------------------SCNKFDKVGSYNAHDQVVTGLAWAFD-----GC------------CLYSCSQDN 264 (318)
Q Consensus 228 --------------------------~~~~~~~~~~~~~h~~~v~~~~~~~~-----~~------------~l~s~~~d~ 264 (318)
+.+.|..-..+-||.+++.++.|+|. .. .+|+|+.|+
T Consensus 225 lSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDr 304 (942)
T KOG0973|consen 225 LSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDR 304 (942)
T ss_pred cccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCc
Confidence 01122222345689999999999982 11 578999999
Q ss_pred cEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 265 FVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 265 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
+|.||........-+..+-.. ..|..++|+|||..|..+
T Consensus 305 SlSVW~T~~~RPl~vi~~lf~-------------~SI~DmsWspdG~~Lfac 343 (942)
T KOG0973|consen 305 SLSVWNTALPRPLFVIHNLFN-------------KSIVDMSWSPDGFSLFAC 343 (942)
T ss_pred cEEEEecCCCCchhhhhhhhc-------------CceeeeeEcCCCCeEEEE
Confidence 999999855443333222222 388999999999877665
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.6e-24 Score=163.16 Aligned_cols=218 Identities=18% Similarity=0.291 Sum_probs=161.0
Q ss_pred CCccceEEeeCCCceeEeecCCCCCCCceecch------hcccccc-c-------------cceeee--------ecccc
Q 021036 15 SNTHPTVAASKSKGNSITKIPSNCCLPLITADQ------YASRSAM-L-------------HSLAVA--------WSPVL 66 (318)
Q Consensus 15 ~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~------~~~~~~~-~-------------~~~~~~--------w~p~~ 66 (318)
.....++|||.|.++++||+++|+++..+.... +...+.. + .+..+. =.|..
T Consensus 62 ~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~ 141 (327)
T KOG0643|consen 62 WDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYL 141 (327)
T ss_pred CCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceE
Confidence 345668999999999999999999877654321 1111110 0 000000 01111
Q ss_pred cCCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCC
Q 021036 67 RLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNP 146 (318)
Q Consensus 67 ~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~ 146 (318)
.+.-+...++..-+++.+++|++|..||.|.+||.+++. +.+..-+.|...|+.|++ +++
T Consensus 142 kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~-------------~~v~s~~~h~~~Ind~q~-------s~d 201 (327)
T KOG0643|consen 142 KIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGK-------------ELVDSDEEHSSKINDLQF-------SRD 201 (327)
T ss_pred EecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCc-------------eeeechhhhccccccccc-------cCC
Confidence 233455667788889999999999999999999999874 456677889999999999 999
Q ss_pred CcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeec
Q 021036 147 QVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCD 226 (318)
Q Consensus 147 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~ 226 (318)
..+++|++.|.+-++||+++.+.++++.... ||++.+++ |..+.++.|+.....-|=...
T Consensus 202 ~T~FiT~s~Dttakl~D~~tl~v~Kty~te~---------------PvN~aais-----P~~d~VilgGGqeA~dVTTT~ 261 (327)
T KOG0643|consen 202 RTYFITGSKDTTAKLVDVRTLEVLKTYTTER---------------PVNTAAIS-----PLLDHVILGGGQEAMDVTTTS 261 (327)
T ss_pred cceEEecccCccceeeeccceeeEEEeeecc---------------cccceecc-----cccceEEecCCceeeeeeeec
Confidence 9999999999999999999999888876544 89999999 777777666543333332222
Q ss_pred cCCCee----------eEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEec
Q 021036 227 ISCNKF----------DKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFH 272 (318)
Q Consensus 227 ~~~~~~----------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 272 (318)
.+.+++ +.+..+++|-++|.+++|+|+|+..++|++||.|++.-..
T Consensus 262 ~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 262 TRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred ccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence 333322 2456678999999999999999999999999999997554
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.6e-24 Score=161.75 Aligned_cols=191 Identities=20% Similarity=0.265 Sum_probs=150.6
Q ss_pred CCccceEEeeCCCceeEeecCCCCCCCc-eecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCC
Q 021036 15 SNTHPTVAASKSKGNSITKIPSNCCLPL-ITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRS 93 (318)
Q Consensus 15 ~~~~~~~t~s~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~d 93 (318)
.+.+.++||+.++-+||+|++..+-.+. +. +|.+. +..+.|.... +.+++.+.|
T Consensus 110 ~ds~~lltgg~ekllrvfdln~p~App~E~~----ghtg~---Ir~v~wc~eD------------------~~iLSSadd 164 (334)
T KOG0278|consen 110 QDSNYLLTGGQEKLLRVFDLNRPKAPPKEIS----GHTGG---IRTVLWCHED------------------KCILSSADD 164 (334)
T ss_pred ccchhhhccchHHHhhhhhccCCCCCchhhc----CCCCc---ceeEEEeccC------------------ceEEeeccC
Confidence 4577899999999999999987553221 11 13333 3336666666 888998999
Q ss_pred CcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeee
Q 021036 94 GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSA 173 (318)
Q Consensus 94 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 173 (318)
++||+||..++. .++++. ...+|+++.+ +++|++|.++ ..+.|++||..+...++.+
T Consensus 165 ~tVRLWD~rTgt--------------~v~sL~-~~s~VtSlEv-------s~dG~ilTia-~gssV~Fwdaksf~~lKs~ 221 (334)
T KOG0278|consen 165 KTVRLWDHRTGT--------------EVQSLE-FNSPVTSLEV-------SQDGRILTIA-YGSSVKFWDAKSFGLLKSY 221 (334)
T ss_pred CceEEEEeccCc--------------EEEEEe-cCCCCcceee-------ccCCCEEEEe-cCceeEEeccccccceeec
Confidence 999999999965 445554 3568999999 8899776555 5679999999998888877
Q ss_pred cccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeee-ecccCceeEEEEcC
Q 021036 174 EAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSY-NAHDQVVTGLAWAF 252 (318)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~ 252 (318)
+... .|.+.+++ |+...+++|+.|..++.|| ..++. .+..+ ++|.++|.|+.|+|
T Consensus 222 k~P~---------------nV~SASL~-----P~k~~fVaGged~~~~kfD--y~Tge--Ei~~~nkgh~gpVhcVrFSP 277 (334)
T KOG0278|consen 222 KMPC---------------NVESASLH-----PKKEFFVAGGEDFKVYKFD--YNTGE--EIGSYNKGHFGPVHCVRFSP 277 (334)
T ss_pred cCcc---------------cccccccc-----CCCceEEecCcceEEEEEe--ccCCc--eeeecccCCCCceEEEEECC
Confidence 7554 67888888 8889999999999999995 44555 45554 89999999999999
Q ss_pred CCCEEEEecCCCcEEEEEecCCcee
Q 021036 253 DGCCLYSCSQDNFVRSWIFHGNSLS 277 (318)
Q Consensus 253 ~~~~l~s~~~d~~v~iwd~~~~~~~ 277 (318)
+|...++|++||+|+||.+..++..
T Consensus 278 dGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 278 DGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred CCceeeccCCCceEEEEEecCCCch
Confidence 9999999999999999998765443
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=170.11 Aligned_cols=239 Identities=17% Similarity=0.176 Sum_probs=180.8
Q ss_pred CCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeeccccc-----------------------C--C
Q 021036 15 SNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLR-----------------------L--S 69 (318)
Q Consensus 15 ~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~-----------------------~--~ 69 (318)
.|..-++++|.|.+..||++......... ..-.+|...+.. +.|+|+.+ + .
T Consensus 234 ~nGkyLAsaSkD~Taiiw~v~~d~~~kl~-~tlvgh~~~V~y---i~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~ 309 (519)
T KOG0293|consen 234 HNGKYLASASKDSTAIIWIVVYDVHFKLK-KTLVGHSQPVSY---IMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPS 309 (519)
T ss_pred CCCeeEeeccCCceEEEEEEecCcceeee-eeeecccCceEE---EEECCCCCeEEecCchHheeeccCCcchhhhhccc
Confidence 34566899999999999987665442211 112335555444 99999976 1 1
Q ss_pred CCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccc-cccEEEEEeeeecCCCCCCCc
Q 021036 70 SKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAH-NSWITSISLAVLSSDSSNPQV 148 (318)
Q Consensus 70 ~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~p~~~~~~~~~~ 148 (318)
+|...+.++++.|+|..+++|+-|+.+..||.+.. ....+++- ...|.+++. .++|+
T Consensus 310 ~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn---------------~~~~W~gvr~~~v~dlai-------t~Dgk 367 (519)
T KOG0293|consen 310 GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN---------------ILGNWEGVRDPKVHDLAI-------TYDGK 367 (519)
T ss_pred CcCCCcceeEEccCCceeEecCCCCcEEEecCCcc---------------hhhcccccccceeEEEEE-------cCCCc
Confidence 23467889999999999999999999999999743 33344433 256999999 99999
Q ss_pred EEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccC
Q 021036 149 LLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDIS 228 (318)
Q Consensus 149 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~ 228 (318)
++++.+.|..+++++.++......+..+ .+|++++++ .+++++++--.+..+++|| .+
T Consensus 368 ~vl~v~~d~~i~l~~~e~~~dr~lise~---------------~~its~~iS-----~d~k~~LvnL~~qei~LWD--l~ 425 (519)
T KOG0293|consen 368 YVLLVTVDKKIRLYNREARVDRGLISEE---------------QPITSFSIS-----KDGKLALVNLQDQEIHLWD--LE 425 (519)
T ss_pred EEEEEecccceeeechhhhhhhcccccc---------------CceeEEEEc-----CCCcEEEEEcccCeeEEee--cc
Confidence 9999999999999998876554433322 389999999 9999999999999999995 44
Q ss_pred CCeeeEeeeeecccCcee--EEEEcC-CCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEE
Q 021036 229 CNKFDKVGSYNAHDQVVT--GLAWAF-DGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMA 305 (318)
Q Consensus 229 ~~~~~~~~~~~~h~~~v~--~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 305 (318)
..+ .+..+.||...-. .-+|-- +..++++|++|+.|+||+..++++.. .+.||...|++|+
T Consensus 426 e~~--lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~--------------~LsGHs~~vNcVs 489 (519)
T KOG0293|consen 426 ENK--LVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLA--------------VLSGHSKTVNCVS 489 (519)
T ss_pred hhh--HHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeE--------------eecCCcceeeEEe
Confidence 333 6777888876433 234543 34699999999999999999988774 5677888999999
Q ss_pred EcC-CCcEEEEEe
Q 021036 306 VSP-GNLVVAMVQ 317 (318)
Q Consensus 306 ~sp-~~~~l~~~~ 317 (318)
|+| +..++|++.
T Consensus 490 wNP~~p~m~ASas 502 (519)
T KOG0293|consen 490 WNPADPEMFASAS 502 (519)
T ss_pred cCCCCHHHhhccC
Confidence 999 667788763
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=171.86 Aligned_cols=210 Identities=19% Similarity=0.206 Sum_probs=161.0
Q ss_pred CCCCCccceEEee-CCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEe
Q 021036 12 MKDSNTHPTVAAS-KSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVG 90 (318)
Q Consensus 12 ~~~~~~~~~~t~s-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g 90 (318)
+...|....+.++ ..+.+.+|.+.+|..+..+. +|..+|+|+.|+.++.+|++|
T Consensus 87 l~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~-------------------------aHYQ~ITcL~fs~dgs~iiTg 141 (476)
T KOG0646|consen 87 LASSNLGYFLLAGTISGNLYLWELSSGILLNVLS-------------------------AHYQSITCLKFSDDGSHIITG 141 (476)
T ss_pred eecCCCceEEEeecccCcEEEEEeccccHHHHHH-------------------------hhccceeEEEEeCCCcEEEec
Confidence 3344444445555 99999999999998755443 355566666666666999999
Q ss_pred cCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCC--CcEEEEEeCCCcEEEEECCCcc
Q 021036 91 GRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNP--QVLLVTGSSDGSVRIWDGYIQE 168 (318)
Q Consensus 91 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~--~~~l~s~~~d~~v~iwd~~~~~ 168 (318)
+.||.|.+|.+.+-- ......+.+++..+..|.-+|+++.. ... ..+|+|+|.|.++++||+..+.
T Consensus 142 skDg~V~vW~l~~lv-----~a~~~~~~~p~~~f~~HtlsITDl~i-------g~Gg~~~rl~TaS~D~t~k~wdlS~g~ 209 (476)
T KOG0646|consen 142 SKDGAVLVWLLTDLV-----SADNDHSVKPLHIFSDHTLSITDLQI-------GSGGTNARLYTASEDRTIKLWDLSLGV 209 (476)
T ss_pred CCCccEEEEEEEeec-----ccccCCCccceeeeccCcceeEEEEe-------cCCCccceEEEecCCceEEEEEeccce
Confidence 999999999885310 00011135688899999999999998 433 3689999999999999999998
Q ss_pred eeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCC------------eeeEee
Q 021036 169 LQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCN------------KFDKVG 236 (318)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~------------~~~~~~ 236 (318)
.+.++.... ++.+++++ |-+..+++|+.+|.|.+.++....+ .-..+.
T Consensus 210 LLlti~fp~---------------si~av~lD-----pae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~ 269 (476)
T KOG0646|consen 210 LLLTITFPS---------------SIKAVALD-----PAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQIN 269 (476)
T ss_pred eeEEEecCC---------------cceeEEEc-----ccccEEEecCCcceEEeeehhcCCcccccccccccccccceee
Confidence 887765433 78999999 9999999999999998875432221 112445
Q ss_pred eeecccC--ceeEEEEcCCCCEEEEecCCCcEEEEEecCCceee
Q 021036 237 SYNAHDQ--VVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQ 278 (318)
Q Consensus 237 ~~~~h~~--~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~ 278 (318)
.+.+|.+ .|+|++.+.||..|++|+.||.|.|||+.+.++.+
T Consensus 270 ~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iR 313 (476)
T KOG0646|consen 270 VLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIR 313 (476)
T ss_pred eeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHH
Confidence 5778888 99999999999999999999999999998866654
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=184.43 Aligned_cols=197 Identities=13% Similarity=0.175 Sum_probs=167.2
Q ss_pred CCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCC
Q 021036 68 LSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQ 147 (318)
Q Consensus 68 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~ 147 (318)
+-+|.+||..++|.|.+.++++|++|-.|++|++.+.+ .+-++.+|-+.|..+.| .+.-
T Consensus 47 FdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr--------------clftL~GHlDYVRt~~F-------Hhey 105 (1202)
T KOG0292|consen 47 FDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR--------------CLFTLLGHLDYVRTVFF-------HHEY 105 (1202)
T ss_pred hhccCCccceeeecCCCCeEEecCCccEEEEEecccce--------------ehhhhccccceeEEeec-------cCCC
Confidence 66899999999999999999999999999999999854 55788999999999999 6777
Q ss_pred cEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeecc
Q 021036 148 VLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDI 227 (318)
Q Consensus 148 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 227 (318)
-+++++|.|.+|+||+..+++++..+.+|. +.|.|.+|+ |..++++++|-|.+|++||+.-
T Consensus 106 PWIlSASDDQTIrIWNwqsr~~iavltGHn--------------HYVMcAqFh-----ptEDlIVSaSLDQTVRVWDisG 166 (1202)
T KOG0292|consen 106 PWILSASDDQTIRIWNWQSRKCIAVLTGHN--------------HYVMCAQFH-----PTEDLIVSASLDQTVRVWDISG 166 (1202)
T ss_pred ceEEEccCCCeEEEEeccCCceEEEEecCc--------------eEEEeeccC-----CccceEEEecccceEEEEeecc
Confidence 799999999999999999999998876655 489999999 9999999999999999998531
Q ss_pred -CC-----C-------------------eeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecC
Q 021036 228 -SC-----N-------------------KFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIP 282 (318)
Q Consensus 228 -~~-----~-------------------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 282 (318)
+. + .....+.+.||...|.-++|+|.-..|++|+.|+.|++|.+...+...+.
T Consensus 167 LRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvD-- 244 (1202)
T KOG0292|consen 167 LRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVD-- 244 (1202)
T ss_pred hhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeeh--
Confidence 00 0 01112346789999999999999999999999999999999765554332
Q ss_pred CCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 283 TNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 283 ~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
+.++|...|.++-|+|....|++.
T Consensus 245 ----------tcrgH~nnVssvlfhp~q~lIlSn 268 (1202)
T KOG0292|consen 245 ----------TCRGHYNNVSSVLFHPHQDLILSN 268 (1202)
T ss_pred ----------hhhcccCCcceEEecCccceeEec
Confidence 456788899999999987777764
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.6e-24 Score=184.35 Aligned_cols=189 Identities=18% Similarity=0.293 Sum_probs=147.9
Q ss_pred ccccccCCCC-CccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEE
Q 021036 73 YPVPQNGSSN-WFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLV 151 (318)
Q Consensus 73 ~~v~~~~~s~-~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~ 151 (318)
+.+.++.+++ ..++||+++..|.|.+||+...-. .+++..|..|...|+++.| ++....+|+
T Consensus 88 ~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r-----------nk~l~~f~EH~Rs~~~ldf------h~tep~ili 150 (839)
T KOG0269|consen 88 YSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIR-----------NKLLTVFNEHERSANKLDF------HSTEPNILI 150 (839)
T ss_pred eehhhcccccchhhhheeecCCCcEEEEecCcccc-----------chhhhHhhhhccceeeeee------ccCCccEEE
Confidence 3444555543 268999999999999999986211 3455678899999999999 455567899
Q ss_pred EEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCe
Q 021036 152 TGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNK 231 (318)
Q Consensus 152 s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~ 231 (318)
+|+.||+|++||++..+...++..... .|+.+.|+ |..+..|+++...|.+++| |++...
T Consensus 151 SGSQDg~vK~~DlR~~~S~~t~~~nSE--------------SiRDV~fs----p~~~~~F~s~~dsG~lqlW--DlRqp~ 210 (839)
T KOG0269|consen 151 SGSQDGTVKCWDLRSKKSKSTFRSNSE--------------SIRDVKFS----PGYGNKFASIHDSGYLQLW--DLRQPD 210 (839)
T ss_pred ecCCCceEEEEeeecccccccccccch--------------hhhceeec----cCCCceEEEecCCceEEEe--eccCch
Confidence 999999999999998887777765443 79999999 4678999999999999999 555433
Q ss_pred eeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCc
Q 021036 232 FDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNL 311 (318)
Q Consensus 232 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 311 (318)
++...+.+|.++|.++.|+|++.+|||||.|++|+|||+.+.....+..-.. ..+|..|+|-|+.+
T Consensus 211 -r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInT-------------iapv~rVkWRP~~~ 276 (839)
T KOG0269|consen 211 -RCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINT-------------IAPVGRVKWRPARS 276 (839)
T ss_pred -hHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEee-------------cceeeeeeeccCcc
Confidence 2566788999999999999999999999999999999998644332111111 13788899998665
Q ss_pred E
Q 021036 312 V 312 (318)
Q Consensus 312 ~ 312 (318)
+
T Consensus 277 ~ 277 (839)
T KOG0269|consen 277 Y 277 (839)
T ss_pred c
Confidence 4
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.4e-23 Score=176.00 Aligned_cols=209 Identities=19% Similarity=0.209 Sum_probs=170.1
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeeccccc-----------------------CCCCc
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLR-----------------------LSSKK 72 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~-----------------------~~~~~ 72 (318)
+...++.|..+|.+.|||..+.+.+..+... |... +.+++|+.... +.+|.
T Consensus 228 ~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~---h~~r---vg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~ 301 (484)
T KOG0305|consen 228 DGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS---HASR---VGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHR 301 (484)
T ss_pred CCCEEEEeecCCeEEEEehhhccccccccCC---cCce---eEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhccc
Confidence 3455788999999999999998887776542 3333 44578875421 55789
Q ss_pred ccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEE
Q 021036 73 YPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVT 152 (318)
Q Consensus 73 ~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s 152 (318)
..|..+.++++++++|+|+.|+.+.|||... ..+...+..|.+.|.+++|+|++. .+||+
T Consensus 302 qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~--------------~~p~~~~~~H~aAVKA~awcP~q~------~lLAs 361 (484)
T KOG0305|consen 302 QEVCGLKWSPDGNQLASGGNDNVVFIWDGLS--------------PEPKFTFTEHTAAVKALAWCPWQS------GLLAT 361 (484)
T ss_pred ceeeeeEECCCCCeeccCCCccceEeccCCC--------------ccccEEEeccceeeeEeeeCCCcc------CceEE
Confidence 9999999999999999999999999999965 346678899999999999966543 46888
Q ss_pred Ee--CCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEE--eCCCcEEEeeeccC
Q 021036 153 GS--SDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVG--KGSGSFDLWKCDIS 228 (318)
Q Consensus 153 ~~--~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~--~~dg~i~vw~~~~~ 228 (318)
|+ .|++|++||..+++.+..+... ..|+.|.|+ +..+.|+++ ..++.|.||++ .
T Consensus 362 GGGs~D~~i~fwn~~~g~~i~~vdtg---------------sQVcsL~Ws-----k~~kEi~sthG~s~n~i~lw~~--p 419 (484)
T KOG0305|consen 362 GGGSADRCIKFWNTNTGARIDSVDTG---------------SQVCSLIWS-----KKYKELLSTHGYSENQITLWKY--P 419 (484)
T ss_pred cCCCcccEEEEEEcCCCcEecccccC---------------CceeeEEEc-----CCCCEEEEecCCCCCcEEEEec--c
Confidence 75 6999999999999988876643 389999999 777655554 36778999954 3
Q ss_pred CCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCC
Q 021036 229 CNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGN 274 (318)
Q Consensus 229 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 274 (318)
+.+ .+..+.+|...|..++++|||..+++|+.|.++++|++-..
T Consensus 420 s~~--~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 420 SMK--LVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ccc--eeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 433 78889999999999999999999999999999999998764
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.9e-23 Score=180.90 Aligned_cols=191 Identities=20% Similarity=0.334 Sum_probs=155.0
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCc
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGK 95 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~ 95 (318)
....+++||.|+++++||..+++|...+.. |.+. +.++.-. +.++++|+.|.+
T Consensus 260 ~~~~lvsgS~D~t~rvWd~~sg~C~~~l~g----h~st---v~~~~~~--------------------~~~~~sgs~D~t 312 (537)
T KOG0274|consen 260 GGDKLVSGSTDKTERVWDCSTGECTHSLQG----HTSS---VRCLTID--------------------PFLLVSGSRDNT 312 (537)
T ss_pred CCCEEEEEecCCcEEeEecCCCcEEEEecC----CCce---EEEEEcc--------------------CceEeeccCCce
Confidence 355689999999999999999999777764 3333 2223222 267788999999
Q ss_pred EEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecc
Q 021036 96 VSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEA 175 (318)
Q Consensus 96 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 175 (318)
|++|+++++. .+..+.+|.++|+++.. . +.++++|+.|++|++||+.+++++..+.+
T Consensus 313 VkVW~v~n~~--------------~l~l~~~h~~~V~~v~~-------~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~g 369 (537)
T KOG0274|consen 313 VKVWDVTNGA--------------CLNLLRGHTGPVNCVQL-------D--EPLLVSGSYDGTVKVWDPRTGKCLKSLSG 369 (537)
T ss_pred EEEEeccCcc--------------eEEEeccccccEEEEEe-------c--CCEEEEEecCceEEEEEhhhceeeeeecC
Confidence 9999999854 56778889999999999 3 77999999999999999999999999887
Q ss_pred cccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCC
Q 021036 176 HCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGC 255 (318)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 255 (318)
|.. .|+++.+. +. ..+++|+.|+.|++| |+++.. +++.++.+|..-+..+.+ .++
T Consensus 370 H~~--------------~V~sl~~~-----~~-~~~~Sgs~D~~IkvW--dl~~~~-~c~~tl~~h~~~v~~l~~--~~~ 424 (537)
T KOG0274|consen 370 HTG--------------RVYSLIVD-----SE-NRLLSGSLDTTIKVW--DLRTKR-KCIHTLQGHTSLVSSLLL--RDN 424 (537)
T ss_pred Ccc--------------eEEEEEec-----Cc-ceEEeeeeccceEee--cCCchh-hhhhhhcCCccccccccc--ccc
Confidence 665 89999776 33 899999999999999 555652 378889999988866654 477
Q ss_pred EEEEecCCCcEEEEEecCCceeeeec
Q 021036 256 CLYSCSQDNFVRSWIFHGNSLSQVSI 281 (318)
Q Consensus 256 ~l~s~~~d~~v~iwd~~~~~~~~~~~ 281 (318)
+|++++.|++|++||...+.+.....
T Consensus 425 ~Lvs~~aD~~Ik~WD~~~~~~~~~~~ 450 (537)
T KOG0274|consen 425 FLVSSSADGTIKLWDAEEGECLRTLE 450 (537)
T ss_pred eeEeccccccEEEeecccCceeeeec
Confidence 99999999999999999877665443
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-23 Score=178.95 Aligned_cols=196 Identities=22% Similarity=0.238 Sum_probs=160.2
Q ss_pred CccceEEeeCCCceeEeecCCCC-----CCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEe
Q 021036 16 NTHPTVAASKSKGNSITKIPSNC-----CLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVG 90 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g 90 (318)
+..-.+|||.|++|++||..-.. ....++..+. +...-...|.|+.+||++++||++
T Consensus 465 D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~------------------rtLel~ddvL~v~~Spdgk~LaVs 526 (888)
T KOG0306|consen 465 DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHT------------------RTLELEDDVLCVSVSPDGKLLAVS 526 (888)
T ss_pred CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccc------------------eEEeccccEEEEEEcCCCcEEEEE
Confidence 34457999999999999865321 1111222110 011112235555555556999999
Q ss_pred cCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCccee
Q 021036 91 GRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQ 170 (318)
Q Consensus 91 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 170 (318)
--|.+|++|-+++ .+..-++.||.-||.|+.. ++++++++|||.|.+|++|-++=|.|.
T Consensus 527 LLdnTVkVyflDt--------------lKFflsLYGHkLPV~smDI-------S~DSklivTgSADKnVKiWGLdFGDCH 585 (888)
T KOG0306|consen 527 LLDNTVKVYFLDT--------------LKFFLSLYGHKLPVLSMDI-------SPDSKLIVTGSADKNVKIWGLDFGDCH 585 (888)
T ss_pred eccCeEEEEEecc--------------eeeeeeecccccceeEEec-------cCCcCeEEeccCCCceEEeccccchhh
Confidence 9999999999998 6677889999999999999 999999999999999999999999999
Q ss_pred eeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEE
Q 021036 171 KSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAW 250 (318)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~ 250 (318)
+.+..|.. .|.++.|. |...+|++++.|+.|+-| |. .+++.+..+.+|...|++++.
T Consensus 586 KS~fAHdD--------------Svm~V~F~-----P~~~~FFt~gKD~kvKqW--Dg--~kFe~iq~L~~H~~ev~cLav 642 (888)
T KOG0306|consen 586 KSFFAHDD--------------SVMSVQFL-----PKTHLFFTCGKDGKVKQW--DG--EKFEEIQKLDGHHSEVWCLAV 642 (888)
T ss_pred hhhhcccC--------------ceeEEEEc-----ccceeEEEecCcceEEee--ch--hhhhhheeeccchheeeeeEE
Confidence 88877765 89999999 899999999999999999 43 345588999999999999999
Q ss_pred cCCCCEEEEecCCCcEEEEEecC
Q 021036 251 AFDGCCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 251 ~~~~~~l~s~~~d~~v~iwd~~~ 273 (318)
+|+|.++++++.|.+|++|....
T Consensus 643 ~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 643 SPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred cCCCCeEEeccCCceeEeeeccC
Confidence 99999999999999999998754
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.1e-22 Score=148.35 Aligned_cols=240 Identities=17% Similarity=0.142 Sum_probs=167.8
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEE
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVS 97 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~ 97 (318)
...+.||++++.||--++.-..+. .. |........ +. ..+.+.|.+.|.|.++|+.|++|++|+.|..|+
T Consensus 45 ~lyavgsnskt~ric~yp~l~~~r--~~----hea~~~pp~-v~---~kr~khhkgsiyc~~ws~~geliatgsndk~ik 114 (350)
T KOG0641|consen 45 GLYAVGSNSKTFRICAYPALIDLR--HA----HEAAKQPPS-VL---CKRNKHHKGSIYCTAWSPCGELIATGSNDKTIK 114 (350)
T ss_pred ceEEeccCCceEEEEccccccCcc--cc----cccccCCCe-EE---eeeccccCccEEEEEecCccCeEEecCCCceEE
Confidence 345789999999997555422111 11 111110000 10 013445677777777777779999999999999
Q ss_pred EEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeC-CCcEEEEECCCcceeeeeccc
Q 021036 98 LWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSS-DGSVRIWDGYIQELQKSAEAH 176 (318)
Q Consensus 98 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~-d~~v~iwd~~~~~~~~~~~~~ 176 (318)
+..++...+.. .-....+.-|.+.|..++|+ .+....+.+|++++. |..|.+-|...|+..+.+.+|
T Consensus 115 ~l~fn~dt~~~---------~g~dle~nmhdgtirdl~fl---d~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sgh 182 (350)
T KOG0641|consen 115 VLPFNADTCNA---------TGHDLEFNMHDGTIRDLAFL---DDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGH 182 (350)
T ss_pred EEecccccccc---------cCcceeeeecCCceeeeEEe---cCCCcCceEEEecCCCcceEEEeecCCCCcceeecCC
Confidence 98887654321 11234577899999999993 223456678888764 778888899899888887766
Q ss_pred ccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeee----c---ccCceeEEE
Q 021036 177 CVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYN----A---HDQVVTGLA 249 (318)
Q Consensus 177 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~----~---h~~~v~~~~ 249 (318)
.. -|..+ ++ -++-+|++|++|.+|++||+.... .+.++. + ....|.+++
T Consensus 183 tg--------------hilal-ys-----wn~~m~~sgsqdktirfwdlrv~~----~v~~l~~~~~~~glessavaav~ 238 (350)
T KOG0641|consen 183 TG--------------HILAL-YS-----WNGAMFASGSQDKTIRFWDLRVNS----CVNTLDNDFHDGGLESSAVAAVA 238 (350)
T ss_pred cc--------------cEEEE-EE-----ecCcEEEccCCCceEEEEeeeccc----eeeeccCcccCCCcccceeEEEE
Confidence 53 34333 22 358899999999999999655443 333332 1 135789999
Q ss_pred EcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 250 WAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 250 ~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
..|.|++|++|-.|....+||++++...+ .+..|+..|.+|.|+|...|++++.
T Consensus 239 vdpsgrll~sg~~dssc~lydirg~r~iq--------------~f~phsadir~vrfsp~a~yllt~s 292 (350)
T KOG0641|consen 239 VDPSGRLLASGHADSSCMLYDIRGGRMIQ--------------RFHPHSADIRCVRFSPGAHYLLTCS 292 (350)
T ss_pred ECCCcceeeeccCCCceEEEEeeCCceee--------------eeCCCccceeEEEeCCCceEEEEec
Confidence 99999999999999999999999987664 2223677999999999999998874
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-23 Score=158.58 Aligned_cols=196 Identities=20% Similarity=0.250 Sum_probs=150.9
Q ss_pred ccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEe
Q 021036 75 VPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS 154 (318)
Q Consensus 75 v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~ 154 (318)
|.+...+=-|+.|||++.|++|+|+.++.+.. .+++.++.+|.++|+.+.| .++.-|.+|++++
T Consensus 14 IHda~lDyygkrlATcsSD~tVkIf~v~~n~~-----------s~ll~~L~Gh~GPVwqv~w-----ahPk~G~iLAScs 77 (299)
T KOG1332|consen 14 IHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ-----------SKLLAELTGHSGPVWKVAW-----AHPKFGTILASCS 77 (299)
T ss_pred hhHhhhhhhcceeeeecCCccEEEEEEcCCCC-----------ceeeeEecCCCCCeeEEee-----cccccCcEeeEee
Confidence 33333333469999999999999999987542 2678899999999999999 3345899999999
Q ss_pred CCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCC--ceEEEEEeCCCcEEEeeeccCCCee
Q 021036 155 SDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPR--LMLLAVGKGSGSFDLWKCDISCNKF 232 (318)
Q Consensus 155 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~--~~~l~~~~~dg~i~vw~~~~~~~~~ 232 (318)
.||.|.||.-.+++-.+. .. ...|...|++++|. |. |-.|++++.||.|.+.+++... .+
T Consensus 78 YDgkVIiWke~~g~w~k~-~e-----------~~~h~~SVNsV~wa-----pheygl~LacasSDG~vsvl~~~~~g-~w 139 (299)
T KOG1332|consen 78 YDGKVIIWKEENGRWTKA-YE-----------HAAHSASVNSVAWA-----PHEYGLLLACASSDGKVSVLTYDSSG-GW 139 (299)
T ss_pred cCceEEEEecCCCchhhh-hh-----------hhhhcccceeeccc-----ccccceEEEEeeCCCcEEEEEEcCCC-Cc
Confidence 999999999888732221 11 13467799999998 54 6799999999999999776652 33
Q ss_pred eEeeeeecccCceeEEEEcCC---C-----------CEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcc
Q 021036 233 DKVGSYNAHDQVVTGLAWAFD---G-----------CCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAF 298 (318)
Q Consensus 233 ~~~~~~~~h~~~v~~~~~~~~---~-----------~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 298 (318)
........|.-.|++++|.|. | +.|++|+.|..|+||+...+..... ..+.+|.
T Consensus 140 ~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e------------~~l~~H~ 207 (299)
T KOG1332|consen 140 TTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLE------------RTLEGHK 207 (299)
T ss_pred cchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhh------------hhhhhcc
Confidence 233445689999999999986 4 5699999999999999887633211 2466789
Q ss_pred eeeeEEEEcCCC----cEEEEE
Q 021036 299 VSCLGMAVSPGN----LVVAMV 316 (318)
Q Consensus 299 ~~v~~v~~sp~~----~~l~~~ 316 (318)
+.|+.++|+|.- .+||++
T Consensus 208 dwVRDVAwaP~~gl~~s~iAS~ 229 (299)
T KOG1332|consen 208 DWVRDVAWAPSVGLPKSTIASC 229 (299)
T ss_pred hhhhhhhhccccCCCceeeEEe
Confidence 999999999953 356665
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.4e-23 Score=178.65 Aligned_cols=185 Identities=22% Similarity=0.297 Sum_probs=157.7
Q ss_pred ccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeee---ccccccEEEEEeeeecCCCCCCCcE
Q 021036 73 YPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLF---QAHNSWITSISLAVLSSDSSNPQVL 149 (318)
Q Consensus 73 ~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~~~~~p~~~~~~~~~~~ 149 (318)
..++++++++.|++.+.|...|.|-+|++++|- ...++ +.|..+|++++. ..-++.
T Consensus 449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi--------------~r~sf~~~~ah~~~V~gla~-------D~~n~~ 507 (910)
T KOG1539|consen 449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGI--------------HRKSFGDSPAHKGEVTGLAV-------DGTNRL 507 (910)
T ss_pred cceEEEEEeccCceEEEeccCCeEEEEEcccCe--------------eecccccCccccCceeEEEe-------cCCCce
Confidence 456667777777999999999999999999853 44555 589999999999 778889
Q ss_pred EEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCC
Q 021036 150 LVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISC 229 (318)
Q Consensus 150 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~ 229 (318)
+++++.+|.+++||.........+.... .+.++..+ ....+++.+..|-.|.++ |..+
T Consensus 508 ~vsa~~~Gilkfw~f~~k~l~~~l~l~~---------------~~~~iv~h-----r~s~l~a~~~ddf~I~vv--D~~t 565 (910)
T KOG1539|consen 508 LVSAGADGILKFWDFKKKVLKKSLRLGS---------------SITGIVYH-----RVSDLLAIALDDFSIRVV--DVVT 565 (910)
T ss_pred EEEccCcceEEEEecCCcceeeeeccCC---------------Ccceeeee-----ehhhhhhhhcCceeEEEE--Echh
Confidence 9999999999999999877666655433 56777777 678899999999999999 5556
Q ss_pred CeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCC
Q 021036 230 NKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPG 309 (318)
Q Consensus 230 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 309 (318)
.+ .+..+.+|++.|++++|||||++|++++.|++|++||+.++.+.....-.. ++.++.|+|+
T Consensus 566 ~k--vvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~---------------~~~sls~SPn 628 (910)
T KOG1539|consen 566 RK--VVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDS---------------PCTSLSFSPN 628 (910)
T ss_pred hh--hhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCC---------------cceeeEECCC
Confidence 55 678899999999999999999999999999999999999998876554443 7799999999
Q ss_pred CcEEEEEe
Q 021036 310 NLVVAMVQ 317 (318)
Q Consensus 310 ~~~l~~~~ 317 (318)
|.+|||+|
T Consensus 629 gD~LAT~H 636 (910)
T KOG1539|consen 629 GDFLATVH 636 (910)
T ss_pred CCEEEEEE
Confidence 99999987
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-23 Score=185.90 Aligned_cols=218 Identities=15% Similarity=0.159 Sum_probs=160.9
Q ss_pred ccccccCCCCCccEEEEec--CCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEE
Q 021036 73 YPVPQNGSSNWFSILAVGG--RSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLL 150 (318)
Q Consensus 73 ~~v~~~~~s~~~~~l~~g~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l 150 (318)
..|++++++|++..+++|+ .||.++||+.+.--... ......-.+.+..+..|.+.|+|+.| +++|++|
T Consensus 14 ~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~--~~~~~~l~k~l~~m~~h~~sv~CVR~-------S~dG~~l 84 (942)
T KOG0973|consen 14 KSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEK--EEKNENLPKHLCTMDDHDGSVNCVRF-------SPDGSYL 84 (942)
T ss_pred eeEEEEEecCCceeEecCCccccccceeeccccccchh--hhhhcccchhheeeccccCceeEEEE-------CCCCCeE
Confidence 4578888999999999999 99999999986311000 00000013456677889999999999 9999999
Q ss_pred EEEeCCCcEEEEECCCcceeeeec-----ccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeee
Q 021036 151 VTGSSDGSVRIWDGYIQELQKSAE-----AHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKC 225 (318)
Q Consensus 151 ~s~~~d~~v~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~ 225 (318)
++|+.|+.|.+|+......-..+. .+...++. .....+|...|..++|+ |++.+|++++-|++|.+|
T Consensus 85 AsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~-~~~l~~H~~DV~Dv~Ws-----p~~~~lvS~s~DnsViiw-- 156 (942)
T KOG0973|consen 85 ASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKV-VSILRGHDSDVLDVNWS-----PDDSLLVSVSLDNSVIIW-- 156 (942)
T ss_pred eeccCcceEEEeeecccCCcccccccccccccceeeE-EEEEecCCCccceeccC-----CCccEEEEecccceEEEE--
Confidence 999999999999977310000110 00111111 13456789999999999 999999999999999999
Q ss_pred ccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEE
Q 021036 226 DISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMA 305 (318)
Q Consensus 226 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 305 (318)
+.++. +.+..+.+|.+.|-.+.|+|-|+|||+-+.|++|++|++..-.+......+.. ...-+..++.+.
T Consensus 157 n~~tF--~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~--------~~~~~T~f~RlS 226 (942)
T KOG0973|consen 157 NAKTF--ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFE--------ESPLTTFFLRLS 226 (942)
T ss_pred ccccc--eeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchh--------hCCCcceeeecc
Confidence 66665 48889999999999999999999999999999999999765333322222211 111234678999
Q ss_pred EcCCCcEEEEEe
Q 021036 306 VSPGNLVVAMVQ 317 (318)
Q Consensus 306 ~sp~~~~l~~~~ 317 (318)
|||||.+|++.+
T Consensus 227 WSPDG~~las~n 238 (942)
T KOG0973|consen 227 WSPDGHHLASPN 238 (942)
T ss_pred cCCCcCeecchh
Confidence 999999999875
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.2e-23 Score=167.86 Aligned_cols=187 Identities=19% Similarity=0.220 Sum_probs=146.8
Q ss_pred ccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEe
Q 021036 75 VPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS 154 (318)
Q Consensus 75 v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~ 154 (318)
|.+++|-.||++||+|...|.|+|+|.++ ...++.+.+|+.+|..+.| +..++..|++|+
T Consensus 71 v~s~~fR~DG~LlaaGD~sG~V~vfD~k~--------------r~iLR~~~ah~apv~~~~f------~~~d~t~l~s~s 130 (487)
T KOG0310|consen 71 VYSVDFRSDGRLLAAGDESGHVKVFDMKS--------------RVILRQLYAHQAPVHVTKF------SPQDNTMLVSGS 130 (487)
T ss_pred eeEEEeecCCeEEEccCCcCcEEEecccc--------------HHHHHHHhhccCceeEEEe------cccCCeEEEecC
Confidence 44555555669999999999999999665 2355788999999999999 345567888899
Q ss_pred CCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeE
Q 021036 155 SDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDK 234 (318)
Q Consensus 155 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 234 (318)
.|+.+++||+.+......+.+|+ ..|.+.+++ |.++.++++|+.||+|++||....+ . .
T Consensus 131 Dd~v~k~~d~s~a~v~~~l~~ht--------------DYVR~g~~~----~~~~hivvtGsYDg~vrl~DtR~~~-~--~ 189 (487)
T KOG0310|consen 131 DDKVVKYWDLSTAYVQAELSGHT--------------DYVRCGDIS----PANDHIVVTGSYDGKVRLWDTRSLT-S--R 189 (487)
T ss_pred CCceEEEEEcCCcEEEEEecCCc--------------ceeEeeccc----cCCCeEEEecCCCceEEEEEeccCC-c--e
Confidence 99999999999877544555554 489999999 3567799999999999999544333 2 5
Q ss_pred eeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEE
Q 021036 235 VGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVA 314 (318)
Q Consensus 235 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~ 314 (318)
+.++. |..+|..+.+-|.|..|++++. ..|++||+.++...... +..|...|+|+.+..++..|+
T Consensus 190 v~eln-hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~-------------~~~H~KtVTcL~l~s~~~rLl 254 (487)
T KOG0310|consen 190 VVELN-HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTS-------------MFNHNKTVTCLRLASDSTRLL 254 (487)
T ss_pred eEEec-CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhh-------------hhcccceEEEEEeecCCceEe
Confidence 66664 9999999999999999998874 58999999865443211 122667999999999999998
Q ss_pred EEe
Q 021036 315 MVQ 317 (318)
Q Consensus 315 ~~~ 317 (318)
+|.
T Consensus 255 S~s 257 (487)
T KOG0310|consen 255 SGS 257 (487)
T ss_pred ecc
Confidence 875
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-22 Score=157.36 Aligned_cols=244 Identities=15% Similarity=0.145 Sum_probs=174.5
Q ss_pred cCcCCCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecc----------------------cc
Q 021036 9 SNKMKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSP----------------------VL 66 (318)
Q Consensus 9 ~~~~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p----------------------~~ 66 (318)
+-++. .....++.+|-||+++++|++.......+. +...++ +++|.+ ..
T Consensus 18 ~v~f~-~~~~~LLvssWDgslrlYdv~~~~l~~~~~-----~~~plL---~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~ 88 (323)
T KOG1036|consen 18 SVKFS-PSSSDLLVSSWDGSLRLYDVPANSLKLKFK-----HGAPLL---DCAFADESTIVTGGLDGQVRRYDLNTGNED 88 (323)
T ss_pred eEEEc-CcCCcEEEEeccCcEEEEeccchhhhhhee-----cCCcee---eeeccCCceEEEeccCceEEEEEecCCcce
Confidence 34455 445667888899999999999875544433 222211 133332 22
Q ss_pred cCCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCC
Q 021036 67 RLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNP 146 (318)
Q Consensus 67 ~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~ 146 (318)
.+..|..+|.|+..+.....+++|+.|++|++||..... ....+. ....|.++.. .
T Consensus 89 ~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~--------------~~~~~d-~~kkVy~~~v---------~ 144 (323)
T KOG1036|consen 89 QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV--------------VVGTFD-QGKKVYCMDV---------S 144 (323)
T ss_pred eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc--------------cccccc-cCceEEEEec---------c
Confidence 255799999999999988999999999999999998522 122222 2348999877 5
Q ss_pred CcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeec
Q 021036 147 QVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCD 226 (318)
Q Consensus 147 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~ 226 (318)
++.|++|+.|..|.+||+++........... -+..+.++++- |++.-+++++-||.|.+=.+|
T Consensus 145 g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~------------lkyqtR~v~~~-----pn~eGy~~sSieGRVavE~~d 207 (323)
T KOG1036|consen 145 GNRLVVGTSDRKVLIYDLRNLDEPFQRRESS------------LKYQTRCVALV-----PNGEGYVVSSIEGRVAVEYFD 207 (323)
T ss_pred CCEEEEeecCceEEEEEcccccchhhhcccc------------ceeEEEEEEEe-----cCCCceEEEeecceEEEEccC
Confidence 6789999999999999999876544222111 13378899998 888899999999999986555
Q ss_pred cCCCeeeEeeeeeccc---------CceeEEEEcCCCCEEEEecCCCcEEEEEecCCcee-eeecCCCCCCccccccCCC
Q 021036 227 ISCNKFDKVGSYNAHD---------QVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLS-QVSIPTNTPGLQSCTDLPD 296 (318)
Q Consensus 227 ~~~~~~~~~~~~~~h~---------~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~ 296 (318)
.+....+.-..|+.|. .+|.+++|+|-...|+||+.||.|.+||+.+++.. ++...+
T Consensus 208 ~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~------------- 274 (323)
T KOG1036|consen 208 DSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYE------------- 274 (323)
T ss_pred CchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCC-------------
Confidence 5411111233455453 47899999999889999999999999999876543 222221
Q ss_pred cceeeeEEEEcCCCcEEEEEe
Q 021036 297 AFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 297 h~~~v~~v~~sp~~~~l~~~~ 317 (318)
..|.+++|+.||..||.+.
T Consensus 275 --~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 275 --TSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred --CceEEEEeccCCCeEEEEe
Confidence 3789999999999999874
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.6e-23 Score=158.68 Aligned_cols=225 Identities=13% Similarity=0.138 Sum_probs=166.2
Q ss_pred eeeecccccCC-CCcccccccCCCC-CccEEEEecCCCcEEEEEccCCccccccccccCCcee---EEeeeccccccEEE
Q 021036 59 AVAWSPVLRLS-SKKYPVPQNGSSN-WFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAV---LIGLFQAHNSWITS 133 (318)
Q Consensus 59 ~~~w~p~~~~~-~~~~~v~~~~~s~-~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~---~~~~~~~h~~~v~~ 133 (318)
.+..+++.-+. .|.+.|..+.+.+ .|+++++|+.||.|.+||++.....+... .-.... ....-.+|.-.|.+
T Consensus 29 ~L~Ln~d~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~--li~k~~c~v~~~h~~~Hky~iss 106 (397)
T KOG4283|consen 29 SLQLNNDKDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASG--LIAKHKCIVAKQHENGHKYAISS 106 (397)
T ss_pred eeeccCCcceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhcc--ceeheeeeccccCCccceeeeee
Confidence 37777765543 4889999999888 48999999999999999998643211000 000000 01122468888999
Q ss_pred EEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCC---ceE
Q 021036 134 ISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPR---LML 210 (318)
Q Consensus 134 ~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~---~~~ 210 (318)
+.|-|+ +.-.|.+++-|.++++||..+.+....|+..+ .|+.-+++ |- .-+
T Consensus 107 ~~WyP~------DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~---------------~VYshamS-----p~a~sHcL 160 (397)
T KOG4283|consen 107 AIWYPI------DTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEG---------------KVYSHAMS-----PMAMSHCL 160 (397)
T ss_pred eEEeee------cCceeecccccceEEEeecccceeeEEeecCc---------------eeehhhcC-----hhhhcceE
Confidence 999554 34478999999999999999988887776554 45565665 32 457
Q ss_pred EEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCC-EEEEecCCCcEEEEEecC--CceeeeecCCCCCC
Q 021036 211 LAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGC-CLYSCSQDNFVRSWIFHG--NSLSQVSIPTNTPG 287 (318)
Q Consensus 211 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~--~~~~~~~~~~~~~~ 287 (318)
+|+|..+-+|++. |+..+. ..+.+.+|.+.|.++.|+|... .|++|+.||.|++||++. ++...+..+.. ..
T Consensus 161 iA~gtr~~~VrLC--Di~SGs--~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~-k~ 235 (397)
T KOG4283|consen 161 IAAGTRDVQVRLC--DIASGS--FSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNT-KR 235 (397)
T ss_pred EEEecCCCcEEEE--eccCCc--ceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccC-cc
Confidence 8899999999998 777887 5678999999999999999877 578999999999999985 45554444432 11
Q ss_pred ccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 288 LQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 288 ~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
.......+.|.+.|++++|+.|+.+++++
T Consensus 236 ~p~~~~n~ah~gkvngla~tSd~~~l~~~ 264 (397)
T KOG4283|consen 236 PPILKTNTAHYGKVNGLAWTSDARYLASC 264 (397)
T ss_pred Cccccccccccceeeeeeecccchhhhhc
Confidence 12223567899999999999999998875
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-24 Score=185.18 Aligned_cols=193 Identities=21% Similarity=0.313 Sum_probs=167.7
Q ss_pred ccCCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCC
Q 021036 66 LRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSN 145 (318)
Q Consensus 66 ~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 145 (318)
..+.+|..+|-++.++.+..+|++|+.+|+|++||++. .+.++++.+|...+.++.| +|
T Consensus 64 ~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee--------------Ak~vrtLtgh~~~~~sv~f-------~P 122 (825)
T KOG0267|consen 64 TSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE--------------AKIVRTLTGHLLNITSVDF-------HP 122 (825)
T ss_pred heeeccCCcceeeecCcchhhhcccccCCceeeeehhh--------------hhhhhhhhccccCcceeee-------cc
Confidence 34778999999999999999999999999999999998 4466799999999999999 88
Q ss_pred CCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeee
Q 021036 146 PQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKC 225 (318)
Q Consensus 146 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~ 225 (318)
-+.++++|+.|+.+++||.+...+.+.+.+|.. .+..+.|+ |+|.+++.|+.|..++||
T Consensus 123 ~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~--------------vv~~l~ls-----P~Gr~v~~g~ed~tvki~-- 181 (825)
T KOG0267|consen 123 YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTR--------------VVDVLRLS-----PDGRWVASGGEDNTVKIW-- 181 (825)
T ss_pred ceEEeccccccccceehhhhccCceeeecCCcc--------------eeEEEeec-----CCCceeeccCCcceeeee--
Confidence 899999999999999999998778877766543 78899999 999999999999999999
Q ss_pred ccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEE
Q 021036 226 DISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMA 305 (318)
Q Consensus 226 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 305 (318)
|...++ .+.+|+.|++.+..+.|+|..-++++|+.|+++++||+++-....- ..+ ....|.+++
T Consensus 182 d~~agk--~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s-~~~-------------~~~~v~~~~ 245 (825)
T KOG0267|consen 182 DLTAGK--LSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISS-GKP-------------ETDGVRSLA 245 (825)
T ss_pred cccccc--cccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeec-cCC-------------ccCCceeee
Confidence 677776 6778999999999999999988999999999999999986444321 111 124889999
Q ss_pred EcCCCcEEEEE
Q 021036 306 VSPGNLVVAMV 316 (318)
Q Consensus 306 ~sp~~~~l~~~ 316 (318)
|+|++..+++|
T Consensus 246 fn~~~~~~~~G 256 (825)
T KOG0267|consen 246 FNPDGKIVLSG 256 (825)
T ss_pred ecCCceeeecC
Confidence 99999998876
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-21 Score=151.98 Aligned_cols=273 Identities=15% Similarity=0.114 Sum_probs=179.2
Q ss_pred cCCCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEe
Q 021036 11 KMKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVG 90 (318)
Q Consensus 11 ~~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g 90 (318)
-..+.....++|+|.|++++|||.......-..+..--.|.+. +..+.|.+.. -|+.+|++
T Consensus 19 Vs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~S---i~rV~WAhPE----------------fGqvvA~c 79 (361)
T KOG2445|consen 19 VSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGS---IWRVVWAHPE----------------FGQVVATC 79 (361)
T ss_pred eeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCc---EEEEEecCcc----------------ccceEEEE
Confidence 4456677889999999999999986544333333222234554 3347775433 27999999
Q ss_pred cCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCccee
Q 021036 91 GRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQ 170 (318)
Q Consensus 91 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 170 (318)
+.|+++.||.-..... ...........++......|+++.|.|.+ -|-.|++++.||.||||+.-..-.+
T Consensus 80 S~Drtv~iWEE~~~~~-----~~~~~~Wv~~ttl~DsrssV~DV~FaP~h-----lGLklA~~~aDG~lRIYEA~dp~nL 149 (361)
T KOG2445|consen 80 SYDRTVSIWEEQEKSE-----EAHGRRWVRRTTLVDSRSSVTDVKFAPKH-----LGLKLAAASADGILRIYEAPDPMNL 149 (361)
T ss_pred ecCCceeeeeeccccc-----ccccceeEEEEEeecCCcceeEEEecchh-----cceEEEEeccCcEEEEEecCCcccc
Confidence 9999999998742110 00001134556677778899999997754 4568999999999999987643222
Q ss_pred eeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCC-----CcEEEeeeccCCCeeeEeeeeecccCce
Q 021036 171 KSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGS-----GSFDLWKCDISCNKFDKVGSYNAHDQVV 245 (318)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~d-----g~i~vw~~~~~~~~~~~~~~~~~h~~~v 245 (318)
........ +..+......+..+..|+.|+... -...+||.|+.+ +.++||..+....++..+.++.+|+.+|
T Consensus 150 s~W~Lq~E-i~~~~~pp~~~~~~~~CvsWn~sr--~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI 226 (361)
T KOG2445|consen 150 SQWTLQHE-IQNVIDPPGKNKQPCFCVSWNPSR--MHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPI 226 (361)
T ss_pred ccchhhhh-hhhccCCcccccCcceEEeecccc--ccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcc
Confidence 21110000 000001112234466788887211 125688888866 5789998776666888899999999999
Q ss_pred eEEEEcCC-C---CEEEEecCCCcEEEEEecCCcee--ee-ecCC-CC--CCccccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 246 TGLAWAFD-G---CCLYSCSQDNFVRSWIFHGNSLS--QV-SIPT-NT--PGLQSCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 246 ~~~~~~~~-~---~~l~s~~~d~~v~iwd~~~~~~~--~~-~~~~-~~--~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
+.++|.|. | +.||+++.|| |+||.+...... .. ...+ .. ..+.-...+.+|.+.|..+.|+-.|..|++
T Consensus 227 ~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsS 305 (361)
T KOG2445|consen 227 RDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSS 305 (361)
T ss_pred eeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEee
Confidence 99999996 4 3799999999 999999752211 00 0001 00 111133456789999999999999999887
Q ss_pred E
Q 021036 316 V 316 (318)
Q Consensus 316 ~ 316 (318)
.
T Consensus 306 t 306 (361)
T KOG2445|consen 306 T 306 (361)
T ss_pred c
Confidence 5
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.5e-23 Score=163.83 Aligned_cols=214 Identities=18% Similarity=0.266 Sum_probs=149.8
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCC-ccEEEEecCCC
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNW-FSILAVGGRSG 94 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~-~~~l~~g~~dg 94 (318)
+...+++=|..|.|.||++... ++.+...++.... ....|.-.+.+|...=+.+++||. ...|++|..-+
T Consensus 164 ~~~~~aswse~G~V~Vw~l~~~--l~~l~~~~~~~~~-------s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~ 234 (440)
T KOG0302|consen 164 NEVLCASWSENGRVQVWDLAPH--LNALSEPGLEVKD-------SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVK 234 (440)
T ss_pred CcceeeeecccCcEEEEEchhh--hhhhcCccccccc-------cccCceEEecccCccceeeecccccccccccCcccc
Confidence 4455677788999999998541 1111111100000 112222233344444444455443 34688998889
Q ss_pred cEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeec
Q 021036 95 KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAE 174 (318)
Q Consensus 95 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 174 (318)
.|++|...++... .-.+.+.+|...|-.|+| ++.....|++||.||+|+|||++.+.....+.
T Consensus 235 ~I~lw~~~~g~W~-----------vd~~Pf~gH~~SVEDLqW------SptE~~vfaScS~DgsIrIWDiRs~~~~~~~~ 297 (440)
T KOG0302|consen 235 GIHLWEPSTGSWK-----------VDQRPFTGHTKSVEDLQW------SPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS 297 (440)
T ss_pred ceEeeeeccCcee-----------ecCccccccccchhhhcc------CCccCceEEeeecCceEEEEEecCCCccceeE
Confidence 9999999987642 123456789999999999 33345689999999999999999874322211
Q ss_pred ccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCC-
Q 021036 175 AHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFD- 253 (318)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~- 253 (318)
...|...|+.|.|+ ..-.+||+|+.||+++|||+..-+.. +++.+++.|..+|+++.|+|.
T Consensus 298 ------------~kAh~sDVNVISWn-----r~~~lLasG~DdGt~~iwDLR~~~~~-~pVA~fk~Hk~pItsieW~p~e 359 (440)
T KOG0302|consen 298 ------------TKAHNSDVNVISWN-----RREPLLASGGDDGTLSIWDLRQFKSG-QPVATFKYHKAPITSIEWHPHE 359 (440)
T ss_pred ------------eeccCCceeeEEcc-----CCcceeeecCCCceEEEEEhhhccCC-CcceeEEeccCCeeEEEecccc
Confidence 14566799999998 66669999999999999965433222 488999999999999999996
Q ss_pred CCEEEEecCCCcEEEEEecC
Q 021036 254 GCCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 254 ~~~l~s~~~d~~v~iwd~~~ 273 (318)
...|++++.|.+|.|||+.-
T Consensus 360 ~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 360 DSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred CceEEeccCCCcEEEEEeec
Confidence 45889999999999999964
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-22 Score=174.62 Aligned_cols=203 Identities=16% Similarity=0.191 Sum_probs=161.2
Q ss_pred ccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEE
Q 021036 73 YPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVT 152 (318)
Q Consensus 73 ~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s 152 (318)
.-+.++++||+|++||+|..-|++++|++.. .+....+.+|...|.|+.|.-. ....++|++
T Consensus 460 ~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~--------------l~~~~~~eAHesEilcLeyS~p----~~~~kLLAS 521 (1080)
T KOG1408|consen 460 FGFRALAVSPDGQHLASGDRGGNLRVYDLQE--------------LEYTCFMEAHESEILCLEYSFP----VLTNKLLAS 521 (1080)
T ss_pred cceEEEEECCCcceecccCccCceEEEEehh--------------hhhhhheecccceeEEEeecCc----hhhhHhhhh
Confidence 3478999999999999999999999999987 4456678899999999999111 113478999
Q ss_pred EeCCCcEEEEECCCc-ceeeeecccccccccce-----------------------------------eeeeecccceeE
Q 021036 153 GSSDGSVRIWDGYIQ-ELQKSAEAHCVPFSLLK-----------------------------------EVVTVNTVPISV 196 (318)
Q Consensus 153 ~~~d~~v~iwd~~~~-~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~v~~ 196 (318)
++.|+.|.+||+... .+++++..|...++.++ .........++.
T Consensus 522 asrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYD 601 (1080)
T KOG1408|consen 522 ASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYD 601 (1080)
T ss_pred ccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEE
Confidence 999999999998753 44455555544333322 111123456788
Q ss_pred EEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeec---ccCceeEEEEcCCCCEEEEecCCCcEEEEEecC
Q 021036 197 LSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNA---HDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 197 l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 273 (318)
+.+. |+.++++++++|..|+|| +++.++ ....|++ |++....+..+|.|-|+++...|.++.++|..+
T Consensus 602 m~Vd-----p~~k~v~t~cQDrnirif--~i~sgK--q~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~s 672 (1080)
T KOG1408|consen 602 MAVD-----PTSKLVVTVCQDRNIRIF--DIESGK--QVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVS 672 (1080)
T ss_pred eeeC-----CCcceEEEEecccceEEE--eccccc--eeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEecc
Confidence 8888 999999999999999999 666776 5666764 667788899999999999999999999999998
Q ss_pred CceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 274 NSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
+++.. .+.+|+..|+++.|.+|.+.|+++
T Consensus 673 gEcvA--------------~m~GHsE~VTG~kF~nDCkHlISv 701 (1080)
T KOG1408|consen 673 GECVA--------------QMTGHSEAVTGVKFLNDCKHLISV 701 (1080)
T ss_pred chhhh--------------hhcCcchheeeeeecccchhheee
Confidence 87763 566788899999999999988875
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-22 Score=177.07 Aligned_cols=184 Identities=21% Similarity=0.239 Sum_probs=152.7
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEE
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVS 97 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~ 97 (318)
..+++++.|.++++||..++..+.. ++.+|.+.|.++++...+.+|++|+.|.+++
T Consensus 219 ~~~~~~s~~~tl~~~~~~~~~~i~~------------------------~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~r 274 (537)
T KOG0274|consen 219 GFFKSGSDDSTLHLWDLNNGYLILT------------------------RLVGHFGGVWGLAFPSGGDKLVSGSTDKTER 274 (537)
T ss_pred CeEEecCCCceeEEeecccceEEEe------------------------eccCCCCCceeEEEecCCCEEEEEecCCcEE
Confidence 4567899999999999887764222 2344555555555555569999999999999
Q ss_pred EEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccc
Q 021036 98 LWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHC 177 (318)
Q Consensus 98 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 177 (318)
+||..+++ ....+.+|...|.++.. .+.++++|+.|.+|++|++.++..+..+.+|.
T Consensus 275 vWd~~sg~--------------C~~~l~gh~stv~~~~~---------~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~ 331 (537)
T KOG0274|consen 275 VWDCSTGE--------------CTHSLQGHTSSVRCLTI---------DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHT 331 (537)
T ss_pred eEecCCCc--------------EEEEecCCCceEEEEEc---------cCceEeeccCCceEEEEeccCcceEEEecccc
Confidence 99999965 55788999999999987 34568889999999999999999998877554
Q ss_pred cccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEE
Q 021036 178 VPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCL 257 (318)
Q Consensus 178 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 257 (318)
.+|+++..+ +.++++|+.|++|++| +..+.+ ++.++.+|...|+++.+... ..+
T Consensus 332 --------------~~V~~v~~~-------~~~lvsgs~d~~v~VW--~~~~~~--cl~sl~gH~~~V~sl~~~~~-~~~ 385 (537)
T KOG0274|consen 332 --------------GPVNCVQLD-------EPLLVSGSYDGTVKVW--DPRTGK--CLKSLSGHTGRVYSLIVDSE-NRL 385 (537)
T ss_pred --------------ccEEEEEec-------CCEEEEEecCceEEEE--Ehhhce--eeeeecCCcceEEEEEecCc-ceE
Confidence 489998885 7899999999999999 556665 89999999999999988765 789
Q ss_pred EEecCCCcEEEEEecCC
Q 021036 258 YSCSQDNFVRSWIFHGN 274 (318)
Q Consensus 258 ~s~~~d~~v~iwd~~~~ 274 (318)
++|+.|++|++||+.+.
T Consensus 386 ~Sgs~D~~IkvWdl~~~ 402 (537)
T KOG0274|consen 386 LSGSLDTTIKVWDLRTK 402 (537)
T ss_pred EeeeeccceEeecCCch
Confidence 99999999999999987
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-22 Score=176.01 Aligned_cols=216 Identities=17% Similarity=0.255 Sum_probs=157.9
Q ss_pred CCCccceEEeeCCCceeEeecCC---CCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEe
Q 021036 14 DSNTHPTVAASKSKGNSITKIPS---NCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVG 90 (318)
Q Consensus 14 ~~~~~~~~t~s~d~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g 90 (318)
....+-++|++..|.|.+||+.. ++.+..+.. |... +.++.|++.. .++|++|
T Consensus 97 ~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~E----H~Rs---~~~ldfh~te-----------------p~iliSG 152 (839)
T KOG0269|consen 97 QLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNE----HERS---ANKLDFHSTE-----------------PNILISG 152 (839)
T ss_pred cchhhhheeecCCCcEEEEecCccccchhhhHhhh----hccc---eeeeeeccCC-----------------ccEEEec
Confidence 34456689999999999999987 333333322 3333 3346666655 5899999
Q ss_pred cCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcc-e
Q 021036 91 GRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQE-L 169 (318)
Q Consensus 91 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-~ 169 (318)
+.||.|++||++..+ ...++.+....|..+.|+ ...+..|+++...|.+++||++... +
T Consensus 153 SQDg~vK~~DlR~~~--------------S~~t~~~nSESiRDV~fs------p~~~~~F~s~~dsG~lqlWDlRqp~r~ 212 (839)
T KOG0269|consen 153 SQDGTVKCWDLRSKK--------------SKSTFRSNSESIRDVKFS------PGYGNKFASIHDSGYLQLWDLRQPDRC 212 (839)
T ss_pred CCCceEEEEeeeccc--------------ccccccccchhhhceeec------cCCCceEEEecCCceEEEeeccCchhH
Confidence 999999999999744 445677788899999994 3446789999999999999999653 3
Q ss_pred eeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEE
Q 021036 170 QKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLA 249 (318)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~ 249 (318)
...+ .+|.++|.++.|+ |++.+||+|+.|+.|+||+ +.+.+..++.++. -..+|..|.
T Consensus 213 ~~k~--------------~AH~GpV~c~nwh-----Pnr~~lATGGRDK~vkiWd--~t~~~~~~~~tIn-Tiapv~rVk 270 (839)
T KOG0269|consen 213 EKKL--------------TAHNGPVLCLNWH-----PNREWLATGGRDKMVKIWD--MTDSRAKPKHTIN-TIAPVGRVK 270 (839)
T ss_pred HHHh--------------hcccCceEEEeec-----CCCceeeecCCCccEEEEe--ccCCCccceeEEe-ecceeeeee
Confidence 3333 4566799999999 8999999999999999995 4444444554443 457899999
Q ss_pred EcCCCC-EEEEec--CCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcC
Q 021036 250 WAFDGC-CLYSCS--QDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSP 308 (318)
Q Consensus 250 ~~~~~~-~l~s~~--~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp 308 (318)
|-|... .|++++ .|-.|+|||++...+.... +..|...++.++|..
T Consensus 271 WRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t-------------~~eH~~~vt~i~W~~ 319 (839)
T KOG0269|consen 271 WRPARSYHLATCSMVVDTSVHVWDVRRPYIPYAT-------------FLEHTDSVTGIAWDS 319 (839)
T ss_pred eccCccchhhhhhccccceEEEEeecccccccee-------------eeccCccccceeccC
Confidence 999855 566665 5778999999865543322 223555666666655
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.1e-22 Score=170.50 Aligned_cols=227 Identities=18% Similarity=0.229 Sum_probs=172.9
Q ss_pred eEEeeCCCceeEeecCCCCCCCceecchhcccccc------------------ccceeeeeccc-----ccCCCCccccc
Q 021036 20 TVAASKSKGNSITKIPSNCCLPLITADQYASRSAM------------------LHSLAVAWSPV-----LRLSSKKYPVP 76 (318)
Q Consensus 20 ~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~w~p~-----~~~~~~~~~v~ 76 (318)
++++|.|+++++|+-..++.+......+ +.+.+ .+.+.+.|.+. ..+.+|...|.
T Consensus 28 i~s~sRd~t~~vw~~~~~~~l~~~~~~~--~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC 105 (745)
T KOG0301|consen 28 IISGSRDGTVKVWAKKGKQYLETHAFEG--PKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVC 105 (745)
T ss_pred EeecCCCCceeeeeccCcccccceeccc--CcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhcccccee
Confidence 6889999999999876655544222111 11110 11122344443 34889999999
Q ss_pred ccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCC
Q 021036 77 QNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSD 156 (318)
Q Consensus 77 ~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d 156 (318)
++....++. +++|+-|.++++|.... ....+++|...|+++.. -+++ .++|||.|
T Consensus 106 ~ls~~~~~~-~iSgSWD~TakvW~~~~----------------l~~~l~gH~asVWAv~~-------l~e~-~~vTgsaD 160 (745)
T KOG0301|consen 106 SLSIGEDGT-LISGSWDSTAKVWRIGE----------------LVYSLQGHTASVWAVAS-------LPEN-TYVTGSAD 160 (745)
T ss_pred eeecCCcCc-eEecccccceEEecchh----------------hhcccCCcchheeeeee-------cCCC-cEEeccCc
Confidence 999988887 99999999999999864 44568999999999998 6666 89999999
Q ss_pred CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEee
Q 021036 157 GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVG 236 (318)
Q Consensus 157 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 236 (318)
.+|++|.- ++.++++.+|.. .|+.+++- ++..|++++.||.|++|+ + ++. .+.
T Consensus 161 KtIklWk~--~~~l~tf~gHtD--------------~VRgL~vl------~~~~flScsNDg~Ir~w~--~-~ge--~l~ 213 (745)
T KOG0301|consen 161 KTIKLWKG--GTLLKTFSGHTD--------------CVRGLAVL------DDSHFLSCSNDGSIRLWD--L-DGE--VLL 213 (745)
T ss_pred ceeeeccC--Cchhhhhccchh--------------heeeeEEe------cCCCeEeecCCceEEEEe--c-cCc--eee
Confidence 99999975 678888887765 78999996 456789999999999994 4 344 677
Q ss_pred eeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 237 SYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 237 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
++.+|+.-|++++...++..++++++|++++||+.. .+.+...+|. ..|+++.+-++|..++.|
T Consensus 214 ~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPt--------------tsiWsa~~L~NgDIvvg~ 277 (745)
T KOG0301|consen 214 EMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPT--------------TSIWSAKVLLNGDIVVGG 277 (745)
T ss_pred eeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCc--------------cceEEEEEeeCCCEEEec
Confidence 889999999999988888899999999999999876 4444444443 267888887777766544
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-22 Score=167.05 Aligned_cols=209 Identities=17% Similarity=0.203 Sum_probs=153.0
Q ss_pred eeeeccCcCCCCCccceEEeeCCCceeEeecCCCCC-CCceecchhccccccccceeeeecccccCCCCcccccccCCCC
Q 021036 4 IVDFTSNKMKDSNTHPTVAASKSKGNSITKIPSNCC-LPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSN 82 (318)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~t~s~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~ 82 (318)
|..++.+.+-+.+...++|+|.|+++||||++..+. ++.|.... ..+....+..++|+|++
T Consensus 268 ia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~--~~g~Rv~~tsC~~nrdg---------------- 329 (641)
T KOG0772|consen 268 IAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP--AGGKRVPVTSCAWNRDG---------------- 329 (641)
T ss_pred eeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeecc--CCCcccCceeeecCCCc----------------
Confidence 456778889999999999999999999999987543 33333211 22222233445566555
Q ss_pred CccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccc--cEEEEEeeeecCCCCCCCcEEEEEeCCCcEE
Q 021036 83 WFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNS--WITSISLAVLSSDSSNPQVLLVTGSSDGSVR 160 (318)
Q Consensus 83 ~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~ 160 (318)
++||+|..||+|.+|+...-.. ......-.+|.. .|+||.| +.+|++|++-+.|++++
T Consensus 330 --~~iAagc~DGSIQ~W~~~~~~v-----------~p~~~vk~AH~~g~~Itsi~F-------S~dg~~LlSRg~D~tLK 389 (641)
T KOG0772|consen 330 --KLIAAGCLDGSIQIWDKGSRTV-----------RPVMKVKDAHLPGQDITSISF-------SYDGNYLLSRGFDDTLK 389 (641)
T ss_pred --chhhhcccCCceeeeecCCccc-----------ccceEeeeccCCCCceeEEEe-------ccccchhhhccCCCcee
Confidence 9999999999999999854221 112223357876 8999999 99999999999999999
Q ss_pred EEECCCcc-eeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe------CCCcEEEeeeccCCCeee
Q 021036 161 IWDGYIQE-LQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK------GSGSFDLWKCDISCNKFD 233 (318)
Q Consensus 161 iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~------~dg~i~vw~~~~~~~~~~ 233 (318)
+||+++.+ ++....+-.. ..+-+.++|+ |+.+++++|. ..|.+.+| +..+..
T Consensus 390 vWDLrq~kkpL~~~tgL~t------------~~~~tdc~FS-----Pd~kli~TGtS~~~~~~~g~L~f~--d~~t~d-- 448 (641)
T KOG0772|consen 390 VWDLRQFKKPLNVRTGLPT------------PFPGTDCCFS-----PDDKLILTGTSAPNGMTAGTLFFF--DRMTLD-- 448 (641)
T ss_pred eeeccccccchhhhcCCCc------------cCCCCccccC-----CCceEEEecccccCCCCCceEEEE--ecccee--
Confidence 99999754 3433332221 2256788999 9999999986 45668888 544433
Q ss_pred EeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEe
Q 021036 234 KVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIF 271 (318)
Q Consensus 234 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~ 271 (318)
.++++.-.+..|..+.|+|.-+.|..|+.||++++|--
T Consensus 449 ~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 449 TVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYD 486 (641)
T ss_pred eEEEecCCCceEEEEeecchhhheeeecCCCceEEEEC
Confidence 66676666788899999998777888889999998843
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.4e-21 Score=156.63 Aligned_cols=220 Identities=19% Similarity=0.192 Sum_probs=167.4
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEE
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVS 97 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~ 97 (318)
..++++|.|..|++|.++...+..... .|..+|+.+...+.|.||++++.||..-
T Consensus 274 ~~v~~aSad~~i~vws~~~~s~~~~~~-------------------------~h~~~V~~ls~h~tgeYllsAs~d~~w~ 328 (506)
T KOG0289|consen 274 DTVITASADEIIRVWSVPLSSEPTSSR-------------------------PHEEPVTGLSLHPTGEYLLSASNDGTWA 328 (506)
T ss_pred hheeecCCcceEEeeccccccCccccc-------------------------cccccceeeeeccCCcEEEEecCCceEE
Confidence 346889999999999887765433322 2334444555555559999999999999
Q ss_pred EEEccCCccccccccccCCceeEEeeec--cccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecc
Q 021036 98 LWRICVPKCYSVEDCKVPTTAVLIGLFQ--AHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEA 175 (318)
Q Consensus 98 iw~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 175 (318)
..|++++.++ .... ...-.+++..| +|+|.+|.+|..|+.|+|||+.++.....|.+
T Consensus 329 Fsd~~~g~~l--------------t~vs~~~s~v~~ts~~f-------HpDgLifgtgt~d~~vkiwdlks~~~~a~Fpg 387 (506)
T KOG0289|consen 329 FSDISSGSQL--------------TVVSDETSDVEYTSAAF-------HPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPG 387 (506)
T ss_pred EEEccCCcEE--------------EEEeeccccceeEEeeE-------cCCceEEeccCCCceEEEEEcCCccccccCCC
Confidence 9999987643 2221 22345899999 89999999999999999999999888877876
Q ss_pred cccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeec-ccCceeEEEEcCCC
Q 021036 176 HCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNA-HDQVVTGLAWAFDG 254 (318)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~ 254 (318)
|.. +|..++|+ .+|.+|++++.|+.|++| |+|..+ ...++.- ....+.++.|++.|
T Consensus 388 ht~--------------~vk~i~Fs-----ENGY~Lat~add~~V~lw--DLRKl~--n~kt~~l~~~~~v~s~~fD~SG 444 (506)
T KOG0289|consen 388 HTG--------------PVKAISFS-----ENGYWLATAADDGSVKLW--DLRKLK--NFKTIQLDEKKEVNSLSFDQSG 444 (506)
T ss_pred CCC--------------ceeEEEec-----cCceEEEEEecCCeEEEE--Eehhhc--ccceeeccccccceeEEEcCCC
Confidence 654 99999999 999999999999999999 455444 3333332 22368999999999
Q ss_pred CEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEeC
Q 021036 255 CCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQI 318 (318)
Q Consensus 255 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~~ 318 (318)
.+|+.++.|=+|++++-.+.....+. .+..|++..+++.|....++++++.+
T Consensus 445 t~L~~~g~~l~Vy~~~k~~k~W~~~~------------~~~~~sg~st~v~Fg~~aq~l~s~sm 496 (506)
T KOG0289|consen 445 TYLGIAGSDLQVYICKKKTKSWTEIK------------ELADHSGLSTGVRFGEHAQYLASTSM 496 (506)
T ss_pred CeEEeecceeEEEEEecccccceeee------------hhhhcccccceeeecccceEEeeccc
Confidence 99999998888888876655544333 23346678899999999999998753
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-21 Score=170.88 Aligned_cols=241 Identities=15% Similarity=0.102 Sum_probs=173.2
Q ss_pred ceEEeeCCCceeEeecCCC-CCCCceecch-----hccccccccc-----eeeeec-----ccccCCCCcccccccCCCC
Q 021036 19 PTVAASKSKGNSITKIPSN-CCLPLITADQ-----YASRSAMLHS-----LAVAWS-----PVLRLSSKKYPVPQNGSSN 82 (318)
Q Consensus 19 ~~~t~s~d~~i~iwd~~~~-~~~~~~~~~~-----~~~~~~~~~~-----~~~~w~-----p~~~~~~~~~~v~~~~~s~ 82 (318)
.+++++.|+.|++|+.... +..+.+...+ +.+....+.+ +...+. +++-+.+...++.+++++.
T Consensus 27 fi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g 106 (933)
T KOG1274|consen 27 FICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSG 106 (933)
T ss_pred EEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEec
Confidence 7899999999999976655 2222222111 1111111000 011111 1222556677899999999
Q ss_pred CccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEE
Q 021036 83 WFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIW 162 (318)
Q Consensus 83 ~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iw 162 (318)
+|+++|.|+.|-.|++-+..+. .....+++|.++|.++.| .|++++|++.+.||.|++|
T Consensus 107 ~g~~iaagsdD~~vK~~~~~D~--------------s~~~~lrgh~apVl~l~~-------~p~~~fLAvss~dG~v~iw 165 (933)
T KOG1274|consen 107 SGKMIAAGSDDTAVKLLNLDDS--------------SQEKVLRGHDAPVLQLSY-------DPKGNFLAVSSCDGKVQIW 165 (933)
T ss_pred CCcEEEeecCceeEEEEecccc--------------chheeecccCCceeeeeE-------cCCCCEEEEEecCceEEEE
Confidence 9999999999999999999873 456788999999999999 9999999999999999999
Q ss_pred ECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeee--ec
Q 021036 163 DGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSY--NA 240 (318)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~--~~ 240 (318)
|+.++.+...+..-..... ......+..++|+ |++..|+..+.|+.|++| +..+.. +...+ +.
T Consensus 166 ~~~~~~~~~tl~~v~k~n~------~~~s~i~~~~aW~-----Pk~g~la~~~~d~~Vkvy--~r~~we--~~f~Lr~~~ 230 (933)
T KOG1274|consen 166 DLQDGILSKTLTGVDKDNE------FILSRICTRLAWH-----PKGGTLAVPPVDNTVKVY--SRKGWE--LQFKLRDKL 230 (933)
T ss_pred EcccchhhhhcccCCcccc------ccccceeeeeeec-----CCCCeEEeeccCCeEEEE--ccCCce--eheeecccc
Confidence 9999887776653322111 1113456788898 898888888889999999 544544 33344 33
Q ss_pred ccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEE
Q 021036 241 HDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVV 313 (318)
Q Consensus 241 h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l 313 (318)
+...+..++|+|.|.|||+++.||.|.|||..+-.. +... ..|.+++|.|+..-|
T Consensus 231 ~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-----~~~~-------------~~Vc~~aw~p~~n~i 285 (933)
T KOG1274|consen 231 SSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-----HEFK-------------RAVCCEAWKPNANAI 285 (933)
T ss_pred cccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-----cccc-------------ceeEEEecCCCCCee
Confidence 555689999999999999999999999999987111 2222 378899999876543
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-21 Score=152.22 Aligned_cols=203 Identities=19% Similarity=0.236 Sum_probs=152.4
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEE
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVS 97 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~ 97 (318)
.-+++||.|.+|+|+|+++...+..+.. |.+. ++++.|.+.. ....|++|+.||.|.
T Consensus 54 ~~~aSGssDetI~IYDm~k~~qlg~ll~----Hags---itaL~F~~~~----------------S~shLlS~sdDG~i~ 110 (362)
T KOG0294|consen 54 PYVASGSSDETIHIYDMRKRKQLGILLS----HAGS---ITALKFYPPL----------------SKSHLLSGSDDGHII 110 (362)
T ss_pred eeEeccCCCCcEEEEeccchhhhcceec----cccc---eEEEEecCCc----------------chhheeeecCCCcEE
Confidence 3468999999999999998877665543 3333 4456666654 124899999999999
Q ss_pred EEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccc
Q 021036 98 LWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHC 177 (318)
Q Consensus 98 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 177 (318)
+|+... ...+..+++|.+.|+.++. .|.+++-++.+.|+.+++||+-+|+.....+...
T Consensus 111 iw~~~~--------------W~~~~slK~H~~~Vt~lsi-------HPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~ 169 (362)
T KOG0294|consen 111 IWRVGS--------------WELLKSLKAHKGQVTDLSI-------HPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN 169 (362)
T ss_pred EEEcCC--------------eEEeeeecccccccceeEe-------cCCCceEEEEcCCceeeeehhhcCccceeeccCC
Confidence 999987 6788999999999999999 8999999999999999999998876544332221
Q ss_pred cc-----------cccce-------e-----ee--eecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCee
Q 021036 178 VP-----------FSLLK-------E-----VV--TVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKF 232 (318)
Q Consensus 178 ~~-----------~~~~~-------~-----~~--~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~ 232 (318)
.+ |.+.. + +. ......+.++.| -++..|++|..|+.|.+||. ....
T Consensus 170 ~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~------l~~~~L~vG~d~~~i~~~D~--ds~~- 240 (362)
T KOG0294|consen 170 KATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATF------LDGSELLVGGDNEWISLKDT--DSDT- 240 (362)
T ss_pred cceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeee------cCCceEEEecCCceEEEecc--CCCc-
Confidence 11 10000 0 00 011223455555 47889999999999999954 3444
Q ss_pred eEeeeeecccCceeEEEE--cCCCCEEEEecCCCcEEEEEecCC
Q 021036 233 DKVGSYNAHDQVVTGLAW--AFDGCCLYSCSQDNFVRSWIFHGN 274 (318)
Q Consensus 233 ~~~~~~~~h~~~v~~~~~--~~~~~~l~s~~~d~~v~iwd~~~~ 274 (318)
+...+.+|...|-++.+ .|++.+|++++.||.|++||++..
T Consensus 241 -~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 241 -PLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred -cceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 77889999999999874 467889999999999999999764
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.9e-21 Score=156.09 Aligned_cols=215 Identities=19% Similarity=0.189 Sum_probs=149.8
Q ss_pred CccceEEeeCCCceeEeecCC-CCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCC-ccEEEEecCC
Q 021036 16 NTHPTVAASKSKGNSITKIPS-NCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNW-FSILAVGGRS 93 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~-~~~l~~g~~d 93 (318)
..+.++.|.-|..|.|||+.= ....+.+.......+-.... =-......+|.-+|..+.+... .+.||+|+.|
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~-----~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD 265 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKK-----GKRSNSASGHTDAVLALSWNRNFRNVLASGSAD 265 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhh-----cccccccccchHHHHHHHhccccceeEEecCCC
Confidence 345678899999999998754 23333333321000000000 0000112234444444444443 5899999999
Q ss_pred CcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCccee-ee
Q 021036 94 GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQ-KS 172 (318)
Q Consensus 94 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~-~~ 172 (318)
.+|++||+.+++ +.+++..|.+.|.++.|+ +.....|++|+.|++|.+.|.+..... ..
T Consensus 266 ~TV~lWD~~~g~--------------p~~s~~~~~k~Vq~l~wh------~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~ 325 (463)
T KOG0270|consen 266 KTVKLWDVDTGK--------------PKSSITHHGKKVQTLEWH------PYEPSVLLSGSYDGTVALKDCRDPSNSGKE 325 (463)
T ss_pred ceEEEEEcCCCC--------------cceehhhcCCceeEEEec------CCCceEEEeccccceEEeeeccCccccCce
Confidence 999999999965 556788899999999993 455678999999999999999942211 11
Q ss_pred ecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcC
Q 021036 173 AEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAF 252 (318)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 252 (318)
.. -.+.|-.++|. +.....++++..||+++-+ |+|... +++.++++|.++|.++++++
T Consensus 326 wk---------------~~g~VEkv~w~----~~se~~f~~~tddG~v~~~--D~R~~~-~~vwt~~AHd~~ISgl~~n~ 383 (463)
T KOG0270|consen 326 WK---------------FDGEVEKVAWD----PHSENSFFVSTDDGTVYYF--DIRNPG-KPVWTLKAHDDEISGLSVNI 383 (463)
T ss_pred EE---------------eccceEEEEec----CCCceeEEEecCCceEEee--ecCCCC-CceeEEEeccCCcceEEecC
Confidence 11 12367788898 3456788899999999999 555543 48999999999999999998
Q ss_pred CC-CEEEEecCCCcEEEEEecCCcee
Q 021036 253 DG-CCLYSCSQDNFVRSWIFHGNSLS 277 (318)
Q Consensus 253 ~~-~~l~s~~~d~~v~iwd~~~~~~~ 277 (318)
.- .++++++.|++|++|++......
T Consensus 384 ~~p~~l~t~s~d~~Vklw~~~~~~~~ 409 (463)
T KOG0270|consen 384 QTPGLLSTASTDKVVKLWKFDVDSPK 409 (463)
T ss_pred CCCcceeeccccceEEEEeecCCCCc
Confidence 64 47899999999999999764443
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3e-21 Score=164.18 Aligned_cols=199 Identities=18% Similarity=0.280 Sum_probs=159.5
Q ss_pred ccceEEeeCCCceeEeecCCCC--CCCceecchhccccccccceeeee-cccccCCCCcccccccCCCCCccEEEEecCC
Q 021036 17 THPTVAASKSKGNSITKIPSNC--CLPLITADQYASRSAMLHSLAVAW-SPVLRLSSKKYPVPQNGSSNWFSILAVGGRS 93 (318)
Q Consensus 17 ~~~~~t~s~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~w-~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~d 93 (318)
...++++|.|-+|++|+.+.+. |+..+.. |++- +.|+++ .+.. .++|+|+-|
T Consensus 85 ~~tlIS~SsDtTVK~W~~~~~~~~c~stir~----H~DY---Vkcla~~ak~~------------------~lvaSgGLD 139 (735)
T KOG0308|consen 85 GKTLISASSDTTVKVWNAHKDNTFCMSTIRT----HKDY---VKCLAYIAKNN------------------ELVASGGLD 139 (735)
T ss_pred CCceEEecCCceEEEeecccCcchhHhhhhc----ccch---heeeeecccCc------------------eeEEecCCC
Confidence 3468999999999999998763 4444432 5554 555666 4444 899999999
Q ss_pred CcEEEEEccCCccccccccccCCceeEEeeec-cccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeee
Q 021036 94 GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQ-AHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKS 172 (318)
Q Consensus 94 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~ 172 (318)
+.|.+||++++..-..... +......+. ++...|++++- .+.|..|++|+..+.+++||.++.+.+..
T Consensus 140 ~~IflWDin~~~~~l~~s~----n~~t~~sl~sG~k~siYSLA~-------N~t~t~ivsGgtek~lr~wDprt~~kimk 208 (735)
T KOG0308|consen 140 RKIFLWDINTGTATLVASF----NNVTVNSLGSGPKDSIYSLAM-------NQTGTIIVSGGTEKDLRLWDPRTCKKIMK 208 (735)
T ss_pred ccEEEEEccCcchhhhhhc----cccccccCCCCCccceeeeec-------CCcceEEEecCcccceEEeccccccceee
Confidence 9999999998632000000 011223333 88899999999 88889999999999999999999988888
Q ss_pred ecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcC
Q 021036 173 AEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAF 252 (318)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 252 (318)
+.+|.. .|..+..+ +||..+++++.||+|++| ++..++ ++.++..|...|+++..+|
T Consensus 209 LrGHTd--------------NVr~ll~~-----dDGt~~ls~sSDgtIrlW--dLgqQr--Cl~T~~vH~e~VWaL~~~~ 265 (735)
T KOG0308|consen 209 LRGHTD--------------NVRVLLVN-----DDGTRLLSASSDGTIRLW--DLGQQR--CLATYIVHKEGVWALQSSP 265 (735)
T ss_pred eecccc--------------ceEEEEEc-----CCCCeEeecCCCceEEee--eccccc--eeeeEEeccCceEEEeeCC
Confidence 777665 78999999 999999999999999999 555665 7888999999999999999
Q ss_pred CCCEEEEecCCCcEEEEEecCC
Q 021036 253 DGCCLYSCSQDNFVRSWIFHGN 274 (318)
Q Consensus 253 ~~~~l~s~~~d~~v~iwd~~~~ 274 (318)
+=..+.+|+.||.|..=|+++.
T Consensus 266 sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 266 SFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred CcceEEecCCCCcEEecccCCc
Confidence 9889999999999999999874
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.1e-22 Score=163.83 Aligned_cols=218 Identities=19% Similarity=0.188 Sum_probs=169.0
Q ss_pred CCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCC
Q 021036 15 SNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSG 94 (318)
Q Consensus 15 ~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg 94 (318)
.+...+++|+.-.++.|||+......-...... .. -+...+++++|.++.+++..||
T Consensus 475 pdgrtLivGGeastlsiWDLAapTprikaelts--sa---------------------paCyALa~spDakvcFsccsdG 531 (705)
T KOG0639|consen 475 PDGRTLIVGGEASTLSIWDLAAPTPRIKAELTS--SA---------------------PACYALAISPDAKVCFSCCSDG 531 (705)
T ss_pred CCCceEEeccccceeeeeeccCCCcchhhhcCC--cc---------------------hhhhhhhcCCccceeeeeccCC
Confidence 456778999999999999997644211111100 00 1123334444449999999999
Q ss_pred cEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeec
Q 021036 95 KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAE 174 (318)
Q Consensus 95 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 174 (318)
.|.|||+.+ ...++.|++|.+.+.||.. +++|..|-||+-|.+|+.||++.+..+....
T Consensus 532 nI~vwDLhn--------------q~~VrqfqGhtDGascIdi-------s~dGtklWTGGlDntvRcWDlregrqlqqhd 590 (705)
T KOG0639|consen 532 NIAVWDLHN--------------QTLVRQFQGHTDGASCIDI-------SKDGTKLWTGGLDNTVRCWDLREGRQLQQHD 590 (705)
T ss_pred cEEEEEccc--------------ceeeecccCCCCCceeEEe-------cCCCceeecCCCccceeehhhhhhhhhhhhh
Confidence 999999997 5578999999999999999 9999999999999999999999887665433
Q ss_pred ccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCC
Q 021036 175 AHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDG 254 (318)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 254 (318)
. ...|.++..+ |+++++++|-.++.+.|- ..+.. ..+.+..|+.-|.++.|.+.|
T Consensus 591 F---------------~SQIfSLg~c-----P~~dWlavGMens~vevl--h~skp---~kyqlhlheScVLSlKFa~cG 645 (705)
T KOG0639|consen 591 F---------------SSQIFSLGYC-----PTGDWLAVGMENSNVEVL--HTSKP---EKYQLHLHESCVLSLKFAYCG 645 (705)
T ss_pred h---------------hhhheecccC-----CCccceeeecccCcEEEE--ecCCc---cceeecccccEEEEEEecccC
Confidence 2 2378888998 999999999999988885 33332 334566799999999999999
Q ss_pred CEEEEecCCCcEEEEEecCCce-eeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 255 CCLYSCSQDNFVRSWIFHGNSL-SQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 255 ~~l~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
+++++.+.|..+..|.+..+.. .+.+. ...|.++..+-|.++|+||.
T Consensus 646 kwfvStGkDnlLnawrtPyGasiFqskE----------------~SsVlsCDIS~ddkyIVTGS 693 (705)
T KOG0639|consen 646 KWFVSTGKDNLLNAWRTPYGASIFQSKE----------------SSSVLSCDISFDDKYIVTGS 693 (705)
T ss_pred ceeeecCchhhhhhccCccccceeeccc----------------cCcceeeeeccCceEEEecC
Confidence 9999999999999998765543 33222 23889999999999999984
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-21 Score=157.26 Aligned_cols=192 Identities=16% Similarity=0.167 Sum_probs=158.5
Q ss_pred CCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCC
Q 021036 68 LSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQ 147 (318)
Q Consensus 68 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~ 147 (318)
+..|..+|.-+.||++|++||+++.|.+..||.+..... .+...++.+|..+|.-+.| +|+.
T Consensus 220 l~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~-----------~kl~~tlvgh~~~V~yi~w-------SPDd 281 (519)
T KOG0293|consen 220 LQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH-----------FKLKKTLVGHSQPVSYIMW-------SPDD 281 (519)
T ss_pred HhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc-----------eeeeeeeecccCceEEEEE-------CCCC
Confidence 557889999999999999999999999999999875432 4677889999999999999 9999
Q ss_pred cEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeecc
Q 021036 148 VLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDI 227 (318)
Q Consensus 148 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 227 (318)
++|++|+.|..+++||+.+|.+...+... +...+.+++|. |||..+++|+.|+.|..|++|-
T Consensus 282 ryLlaCg~~e~~~lwDv~tgd~~~~y~~~-------------~~~S~~sc~W~-----pDg~~~V~Gs~dr~i~~wdlDg 343 (519)
T KOG0293|consen 282 RYLLACGFDEVLSLWDVDTGDLRHLYPSG-------------LGFSVSSCAWC-----PDGFRFVTGSPDRTIIMWDLDG 343 (519)
T ss_pred CeEEecCchHheeeccCCcchhhhhcccC-------------cCCCcceeEEc-----cCCceeEecCCCCcEEEecCCc
Confidence 99999999999999999999887765432 23478899999 9999999999999999996653
Q ss_pred CCCeeeEeeeeecc-cCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEE
Q 021036 228 SCNKFDKVGSYNAH-DQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAV 306 (318)
Q Consensus 228 ~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 306 (318)
+ ....+++- ...|.+++.++||+++++...|..|++++..+.....+.... .+|++.+.
T Consensus 344 n-----~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~---------------~~its~~i 403 (519)
T KOG0293|consen 344 N-----ILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEE---------------QPITSFSI 403 (519)
T ss_pred c-----hhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccccc---------------CceeEEEE
Confidence 2 23334432 256899999999999999999999999998775544222222 28899999
Q ss_pred cCCCcEEEE
Q 021036 307 SPGNLVVAM 315 (318)
Q Consensus 307 sp~~~~l~~ 315 (318)
|.||+++++
T Consensus 404 S~d~k~~Lv 412 (519)
T KOG0293|consen 404 SKDGKLALV 412 (519)
T ss_pred cCCCcEEEE
Confidence 999998765
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.7e-21 Score=153.96 Aligned_cols=191 Identities=17% Similarity=0.278 Sum_probs=146.8
Q ss_pred ccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEe
Q 021036 75 VPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS 154 (318)
Q Consensus 75 v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~ 154 (318)
|.++... ++.|++|+.||.+++||.. ++....+.+|.++|.+++|.-.. +....|++++
T Consensus 108 VSsv~~~--~~~IltgsYDg~~riWd~~---------------Gk~~~~~~Ght~~ik~v~~v~~n----~~~~~fvsas 166 (423)
T KOG0313|consen 108 VSSVKGA--SKWILTGSYDGTSRIWDLK---------------GKSIKTIVGHTGPIKSVAWVIKN----SSSCLFVSAS 166 (423)
T ss_pred hhhhccc--CceEEEeecCCeeEEEecC---------------CceEEEEecCCcceeeeEEEecC----CccceEEEec
Confidence 5555554 5899999999999999998 45677889999999999883221 1223699999
Q ss_pred CCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeec--------
Q 021036 155 SDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCD-------- 226 (318)
Q Consensus 155 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~-------- 226 (318)
.|.++++|..+.+........ ...+|...|.+++.. ++|..+++|+.|..|++|+..
T Consensus 167 ~Dqtl~Lw~~~~~~~~~~~~~----------~~~GHk~~V~sVsv~-----~sgtr~~SgS~D~~lkiWs~~~~~~~~~E 231 (423)
T KOG0313|consen 167 MDQTLRLWKWNVGENKVKALK----------VCRGHKRSVDSVSVD-----SSGTRFCSGSWDTMLKIWSVETDEEDELE 231 (423)
T ss_pred CCceEEEEEecCchhhhhHHh----------HhcccccceeEEEec-----CCCCeEEeecccceeeecccCCCcccccc
Confidence 999999999987754432211 113678899999998 999999999999999999711
Q ss_pred -------------cCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCcccccc
Q 021036 227 -------------ISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTD 293 (318)
Q Consensus 227 -------------~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 293 (318)
...+...++..+.+|.++|.++.|++ ...+++++.|-+|+.||+.++........+.
T Consensus 232 ~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k--------- 301 (423)
T KOG0313|consen 232 SSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK--------- 301 (423)
T ss_pred ccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCc---------
Confidence 11122346677899999999999998 5679999999999999999877654333332
Q ss_pred CCCcceeeeEEEEcCCCcEEEEEe
Q 021036 294 LPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 294 ~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
.+++++.+|...+||+|.
T Consensus 302 ------sl~~i~~~~~~~Ll~~gs 319 (423)
T KOG0313|consen 302 ------SLNCISYSPLSKLLASGS 319 (423)
T ss_pred ------ceeEeecccccceeeecC
Confidence 567888888888887763
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-20 Score=153.76 Aligned_cols=262 Identities=16% Similarity=0.122 Sum_probs=177.3
Q ss_pred EeeCCCc-eeEeecCCCCCCCceecc-hhccccc-c------c-------cceeeeecccccCC---CCcccccccCCCC
Q 021036 22 AASKSKG-NSITKIPSNCCLPLITAD-QYASRSA-M------L-------HSLAVAWSPVLRLS---SKKYPVPQNGSSN 82 (318)
Q Consensus 22 t~s~d~~-i~iwd~~~~~~~~~~~~~-~~~~~~~-~------~-------~~~~~~w~p~~~~~---~~~~~v~~~~~s~ 82 (318)
++|.|.. +.+||+.++...-.+... ...+.+. . + ......|.+..... .--++|.++.-++
T Consensus 12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n 91 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSN 91 (476)
T ss_pred ccCCCCcceeEEecCCCceeEEecCcccccchhhhhhchhheeeecccCccccccccCchhhhhhhcccccceeeeecCC
Confidence 3455544 899999998765544332 1111110 0 0 01122333333222 1234689999999
Q ss_pred CccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEE
Q 021036 83 WFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIW 162 (318)
Q Consensus 83 ~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iw 162 (318)
+|.+|+.|+..|.|++|.+.+|. ++..+.+|-..|+|+.| +.+|.+|+||+.||.|.+|
T Consensus 92 ~G~~l~ag~i~g~lYlWelssG~--------------LL~v~~aHYQ~ITcL~f-------s~dgs~iiTgskDg~V~vW 150 (476)
T KOG0646|consen 92 LGYFLLAGTISGNLYLWELSSGI--------------LLNVLSAHYQSITCLKF-------SDDGSHIITGSKDGAVLVW 150 (476)
T ss_pred CceEEEeecccCcEEEEEecccc--------------HHHHHHhhccceeEEEE-------eCCCcEEEecCCCccEEEE
Confidence 99999999999999999999965 55678899999999999 9999999999999999999
Q ss_pred ECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeeccc
Q 021036 163 DGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHD 242 (318)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~ 242 (318)
++..- +.....+ ..........|.-+|+++...+. +....+++++.|.++++| |+..+. .+.++. ..
T Consensus 151 ~l~~l--v~a~~~~---~~~p~~~f~~HtlsITDl~ig~G---g~~~rl~TaS~D~t~k~w--dlS~g~--LLlti~-fp 217 (476)
T KOG0646|consen 151 LLTDL--VSADNDH---SVKPLHIFSDHTLSITDLQIGSG---GTNARLYTASEDRTIKLW--DLSLGV--LLLTIT-FP 217 (476)
T ss_pred EEEee--cccccCC---CccceeeeccCcceeEEEEecCC---CccceEEEecCCceEEEE--Eeccce--eeEEEe-cC
Confidence 87531 1101100 00111334556668999998721 134689999999999999 566665 444443 56
Q ss_pred CceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCC--CCccccccCCCcce--eeeEEEEcCCCcEEEEEe
Q 021036 243 QVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNT--PGLQSCTDLPDAFV--SCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 243 ~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~h~~--~v~~v~~sp~~~~l~~~~ 317 (318)
..+.+++.+|.++.++.|+.+|.|.+.++..-.-......... ........+.+|.+ .|++++.+-||..|++|+
T Consensus 218 ~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd 296 (476)
T KOG0646|consen 218 SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGD 296 (476)
T ss_pred CcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeC
Confidence 7899999999999999999999999998865221111000000 00001123457777 999999999999999986
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.7e-20 Score=143.07 Aligned_cols=188 Identities=12% Similarity=0.134 Sum_probs=146.8
Q ss_pred CcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEE
Q 021036 71 KKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLL 150 (318)
Q Consensus 71 ~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l 150 (318)
-...|.+++++.+|.++++++.|-+++|||..++ +.++++..+.-.|..++| ......+
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g--------------~~~~ti~skkyG~~~~~F-------th~~~~~ 71 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSG--------------KQVKTINSKKYGVDLACF-------THHSNTV 71 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCC--------------ceeeEeecccccccEEEE-------ecCCceE
Confidence 3467788888888899999999999999999985 466778777788999999 5555556
Q ss_pred EEEeC--CCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccC
Q 021036 151 VTGSS--DGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDIS 228 (318)
Q Consensus 151 ~s~~~--d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~ 228 (318)
+.++. |.+|+..++.+.+.+..+.+|.. .|+.|+.+ |-++.|++++.|++|++|| ++
T Consensus 72 i~sStk~d~tIryLsl~dNkylRYF~GH~~--------------~V~sL~~s-----P~~d~FlS~S~D~tvrLWD--lR 130 (311)
T KOG1446|consen 72 IHSSTKEDDTIRYLSLHDNKYLRYFPGHKK--------------RVNSLSVS-----PKDDTFLSSSLDKTVRLWD--LR 130 (311)
T ss_pred EEccCCCCCceEEEEeecCceEEEcCCCCc--------------eEEEEEec-----CCCCeEEecccCCeEEeeE--ec
Confidence 66665 88999999999999998887776 89999999 8889999999999999995 55
Q ss_pred CCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecC---CceeeeecCCCCCCccccccCCCcceeeeEEE
Q 021036 229 CNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHG---NSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMA 305 (318)
Q Consensus 229 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 305 (318)
..+ +...+..... ..++|+|.|-++|++.....|++||++. +....+..... -....+.+.
T Consensus 131 ~~~--cqg~l~~~~~--pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~------------~~~ew~~l~ 194 (311)
T KOG1446|consen 131 VKK--CQGLLNLSGR--PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDN------------DEAEWTDLE 194 (311)
T ss_pred CCC--CceEEecCCC--cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCC------------CccceeeeE
Confidence 444 2223322223 3478999999999998888999999986 33334433311 123788999
Q ss_pred EcCCCcEEEEE
Q 021036 306 VSPGNLVVAMV 316 (318)
Q Consensus 306 ~sp~~~~l~~~ 316 (318)
|||||++|+.+
T Consensus 195 FS~dGK~iLls 205 (311)
T KOG1446|consen 195 FSPDGKSILLS 205 (311)
T ss_pred EcCCCCEEEEE
Confidence 99999987754
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.4e-21 Score=148.40 Aligned_cols=208 Identities=18% Similarity=0.172 Sum_probs=142.8
Q ss_pred ccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEe
Q 021036 75 VPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS 154 (318)
Q Consensus 75 v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~ 154 (318)
..|+.|++.|.+||+|+.||.|.|||+.+ ...-+.+.+|..+|.+++| +++|+.|+|+|
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T--------------~~iar~lsaH~~pi~sl~W-------S~dgr~LltsS 84 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDT--------------FRIARMLSAHVRPITSLCW-------SRDGRKLLTSS 84 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccc--------------cchhhhhhccccceeEEEe-------cCCCCEeeeec
Confidence 34556666669999999999999999998 4455678999999999999 99999999999
Q ss_pred CCCcEEEEECCCcceeeeecccccccccce-----------------eeeeec---------------ccceeEEEEeec
Q 021036 155 SDGSVRIWDGYIQELQKSAEAHCVPFSLLK-----------------EVVTVN---------------TVPISVLSLILP 202 (318)
Q Consensus 155 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~---------------~~~v~~l~~~~~ 202 (318)
.|..+++||+..|.+++.+.....-+.... .+.... .....+..|.
T Consensus 85 ~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fd-- 162 (405)
T KOG1273|consen 85 RDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFD-- 162 (405)
T ss_pred CCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccccccccccccc--
Confidence 999999999999988776543221110000 000000 0011122233
Q ss_pred cCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeeccc-CceeEEEEcCCCCEEEEecCCCcEEEEEecCCcee--ee
Q 021036 203 VQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHD-QVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLS--QV 279 (318)
Q Consensus 203 ~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~--~~ 279 (318)
+.|+++++|...|.+.+| +..+.+ .+..++--. ..|..+.++..|++|+.-+.|+.||.|+++.-... .-
T Consensus 163 ---r~g~yIitGtsKGkllv~--~a~t~e--~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~ 235 (405)
T KOG1273|consen 163 ---RRGKYIITGTSKGKLLVY--DAETLE--CVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDG 235 (405)
T ss_pred ---CCCCEEEEecCcceEEEE--ecchhe--eeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccC
Confidence 779999999999999999 555554 666666544 67889999999999999999999999998630000 00
Q ss_pred ecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 280 SIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 280 ~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
...+... ..++ .....-.++.|+.||.|++.+.
T Consensus 236 e~e~~~K----~qDv-VNk~~Wk~ccfs~dgeYv~a~s 268 (405)
T KOG1273|consen 236 EVEPEHK----LQDV-VNKLQWKKCCFSGDGEYVCAGS 268 (405)
T ss_pred CcChhHH----HHHH-HhhhhhhheeecCCccEEEecc
Confidence 0000000 0000 0012446889999999988763
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.4e-21 Score=156.89 Aligned_cols=184 Identities=15% Similarity=0.179 Sum_probs=147.1
Q ss_pred ccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEe
Q 021036 75 VPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS 154 (318)
Q Consensus 75 v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~ 154 (318)
+.+|...++|+.|++|+.-.++.|||+.... .+....+..-.-..+.++. +++.+..++++
T Consensus 468 iRSckL~pdgrtLivGGeastlsiWDLAapT------------prikaeltssapaCyALa~-------spDakvcFscc 528 (705)
T KOG0639|consen 468 IRSCKLLPDGRTLIVGGEASTLSIWDLAAPT------------PRIKAELTSSAPACYALAI-------SPDAKVCFSCC 528 (705)
T ss_pred eeeeEecCCCceEEeccccceeeeeeccCCC------------cchhhhcCCcchhhhhhhc-------CCccceeeeec
Confidence 4445555566999999999999999998754 2233334443456778888 89999999999
Q ss_pred CCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeE
Q 021036 155 SDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDK 234 (318)
Q Consensus 155 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 234 (318)
.||.|.|||+.+...+..+.+|.. .+.||.++ ++|..|.+|+-|++|+-| |++.++ .
T Consensus 529 sdGnI~vwDLhnq~~VrqfqGhtD--------------GascIdis-----~dGtklWTGGlDntvRcW--Dlregr--q 585 (705)
T KOG0639|consen 529 SDGNIAVWDLHNQTLVRQFQGHTD--------------GASCIDIS-----KDGTKLWTGGLDNTVRCW--DLREGR--Q 585 (705)
T ss_pred cCCcEEEEEcccceeeecccCCCC--------------CceeEEec-----CCCceeecCCCccceeeh--hhhhhh--h
Confidence 999999999999999999988776 88999999 999999999999999999 666655 2
Q ss_pred eeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEE
Q 021036 235 VGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVA 314 (318)
Q Consensus 235 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~ 314 (318)
+.. ......|.++.++|.+.+++.|-+++.+.+-........++.. |...|.++.|++.|++++
T Consensus 586 lqq-hdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhl---------------heScVLSlKFa~cGkwfv 649 (705)
T KOG0639|consen 586 LQQ-HDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHL---------------HESCVLSLKFAYCGKWFV 649 (705)
T ss_pred hhh-hhhhhhheecccCCCccceeeecccCcEEEEecCCccceeecc---------------cccEEEEEEecccCceee
Confidence 222 1234689999999999999999999999887766554444333 445999999999999998
Q ss_pred EE
Q 021036 315 MV 316 (318)
Q Consensus 315 ~~ 316 (318)
+.
T Consensus 650 St 651 (705)
T KOG0639|consen 650 ST 651 (705)
T ss_pred ec
Confidence 75
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.5e-21 Score=153.39 Aligned_cols=194 Identities=22% Similarity=0.327 Sum_probs=148.9
Q ss_pred ccCcCCCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEE
Q 021036 8 TSNKMKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSIL 87 (318)
Q Consensus 8 ~~~~~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l 87 (318)
++.+++-.... +++|+.|.+++.||+....|...+.... ...+ +.-+ ...+
T Consensus 265 t~ak~~~~~~~-vVsgs~DRtiK~WDl~k~~C~kt~l~~S-----~cnD---I~~~--------------------~~~~ 315 (459)
T KOG0288|consen 265 TAAKFKLSHSR-VVSGSADRTIKLWDLQKAYCSKTVLPGS-----QCND---IVCS--------------------ISDV 315 (459)
T ss_pred eeehhhccccc-eeeccccchhhhhhhhhhheeccccccc-----cccc---eEec--------------------ceee
Confidence 33444433333 8999999999999999988866654321 1111 2111 2678
Q ss_pred EEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCc
Q 021036 88 AVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQ 167 (318)
Q Consensus 88 ~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 167 (318)
++|..|++|++||..++. .......+. .|+++.. +.++..|++++.|.++.+.|+++.
T Consensus 316 ~SgH~DkkvRfwD~Rs~~--------------~~~sv~~gg-~vtSl~l-------s~~g~~lLsssRDdtl~viDlRt~ 373 (459)
T KOG0288|consen 316 ISGHFDKKVRFWDIRSAD--------------KTRSVPLGG-RVTSLDL-------SMDGLELLSSSRDDTLKVIDLRTK 373 (459)
T ss_pred eecccccceEEEeccCCc--------------eeeEeecCc-ceeeEee-------ccCCeEEeeecCCCceeeeecccc
Confidence 999999999999998854 445565554 9999999 999999999999999999999998
Q ss_pred ceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeE
Q 021036 168 ELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTG 247 (318)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~ 247 (318)
+....+..... ..++ ..+.+.|+ |++.++++|+.||.|+|| +..+++.+.+.........|++
T Consensus 374 eI~~~~sA~g~--------k~as--DwtrvvfS-----pd~~YvaAGS~dgsv~iW--~v~tgKlE~~l~~s~s~~aI~s 436 (459)
T KOG0288|consen 374 EIRQTFSAEGF--------KCAS--DWTRVVFS-----PDGSYVAAGSADGSVYIW--SVFTGKLEKVLSLSTSNAAITS 436 (459)
T ss_pred cEEEEeecccc--------cccc--ccceeEEC-----CCCceeeeccCCCcEEEE--EccCceEEEEeccCCCCcceEE
Confidence 87777654431 1222 47888999 999999999999999999 6678876555444433447999
Q ss_pred EEEcCCCCEEEEecCCCcEEEE
Q 021036 248 LAWAFDGCCLYSCSQDNFVRSW 269 (318)
Q Consensus 248 ~~~~~~~~~l~s~~~d~~v~iw 269 (318)
++|+|.|..|++++.++.+.+|
T Consensus 437 ~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 437 LSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred EEEcCCCchhhcccCCcceEec
Confidence 9999999999999999999999
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.8e-22 Score=169.89 Aligned_cols=175 Identities=26% Similarity=0.433 Sum_probs=149.2
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEE
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWD 163 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd 163 (318)
++.+++|+.|..+.+|.+.... .+..+.+|..+|.++.| .....+|++|+.+|+|++||
T Consensus 40 ~r~~~~Gg~~~k~~L~~i~kp~--------------~i~S~~~hespIeSl~f-------~~~E~LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 40 SRSLVTGGEDEKVNLWAIGKPN--------------AITSLTGHESPIESLTF-------DTSERLLAAGSASGTIKVWD 98 (825)
T ss_pred ceeeccCCCceeeccccccCCc--------------hhheeeccCCcceeeec-------CcchhhhcccccCCceeeee
Confidence 4899999999999999998754 34568999999999999 88889999999999999999
Q ss_pred CCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccC
Q 021036 164 GYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQ 243 (318)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~ 243 (318)
++..+.+.++.+|.. .+..+.|+ |-+.++|.|+.|+.+++| |.+..- +.+.+.+|..
T Consensus 99 leeAk~vrtLtgh~~--------------~~~sv~f~-----P~~~~~a~gStdtd~~iw--D~Rk~G--c~~~~~s~~~ 155 (825)
T KOG0267|consen 99 LEEAKIVRTLTGHLL--------------NITSVDFH-----PYGEFFASGSTDTDLKIW--DIRKKG--CSHTYKSHTR 155 (825)
T ss_pred hhhhhhhhhhhcccc--------------Ccceeeec-----cceEEeccccccccceeh--hhhccC--ceeeecCCcc
Confidence 999888887766654 78889999 999999999999999999 554333 6778889999
Q ss_pred ceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 244 VVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 244 ~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
.+..+.|+|+|++++.+++|.+++|||+..+++.. ++..|.+.+.++.|+|..-.+++|
T Consensus 156 vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~--------------ef~~~e~~v~sle~hp~e~Lla~G 214 (825)
T KOG0267|consen 156 VVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSK--------------EFKSHEGKVQSLEFHPLEVLLAPG 214 (825)
T ss_pred eeEEEeecCCCceeeccCCcceeeeeccccccccc--------------ccccccccccccccCchhhhhccC
Confidence 99999999999999999999999999998877663 444566677888888876666655
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.1e-19 Score=133.94 Aligned_cols=229 Identities=15% Similarity=0.197 Sum_probs=161.8
Q ss_pred ceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCC----CCccEEEEec-CC
Q 021036 19 PTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSS----NWFSILAVGG-RS 93 (318)
Q Consensus 19 ~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s----~~~~~l~~g~-~d 93 (318)
.+++||+|++|++.-++...+...-.. + .+.-|.+.|.+++|- ..+.+|++++ .|
T Consensus 103 liatgsndk~ik~l~fn~dt~~~~g~d--------------l------e~nmhdgtirdl~fld~~~s~~~il~s~gagd 162 (350)
T KOG0641|consen 103 LIATGSNDKTIKVLPFNADTCNATGHD--------------L------EFNMHDGTIRDLAFLDDPESGGAILASAGAGD 162 (350)
T ss_pred eEEecCCCceEEEEecccccccccCcc--------------e------eeeecCCceeeeEEecCCCcCceEEEecCCCc
Confidence 368899999999987666554322111 1 111122333333331 1246676654 45
Q ss_pred CcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeee
Q 021036 94 GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSA 173 (318)
Q Consensus 94 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 173 (318)
..|++-|..++ +....+.+|.+.|.++- +-++-.+++|+.|.+|++||++-..++.++
T Consensus 163 c~iy~tdc~~g--------------~~~~a~sghtghilaly--------swn~~m~~sgsqdktirfwdlrv~~~v~~l 220 (350)
T KOG0641|consen 163 CKIYITDCGRG--------------QGFHALSGHTGHILALY--------SWNGAMFASGSQDKTIRFWDLRVNSCVNTL 220 (350)
T ss_pred ceEEEeecCCC--------------CcceeecCCcccEEEEE--------EecCcEEEccCCCceEEEEeeeccceeeec
Confidence 66666676664 46678899999988762 347789999999999999999988887765
Q ss_pred cccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCC
Q 021036 174 EAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFD 253 (318)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 253 (318)
...... .......|..+++. |.|++|++|-.|...-+| |++.++ +++.+..|...|.++.|+|.
T Consensus 221 ~~~~~~-------~glessavaav~vd-----psgrll~sg~~dssc~ly--dirg~r--~iq~f~phsadir~vrfsp~ 284 (350)
T KOG0641|consen 221 DNDFHD-------GGLESSAVAAVAVD-----PSGRLLASGHADSSCMLY--DIRGGR--MIQRFHPHSADIRCVRFSPG 284 (350)
T ss_pred cCcccC-------CCcccceeEEEEEC-----CCcceeeeccCCCceEEE--EeeCCc--eeeeeCCCccceeEEEeCCC
Confidence 432110 01123478899999 999999999999999999 677887 88899999999999999999
Q ss_pred CCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 254 GCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 254 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
..++++++.|..|++=|+.+....+++.- -..+|...+..+.|+|+.-.+++
T Consensus 285 a~yllt~syd~~ikltdlqgdla~el~~~----------vv~ehkdk~i~~rwh~~d~sfis 336 (350)
T KOG0641|consen 285 AHYLLTCSYDMKIKLTDLQGDLAHELPIM----------VVAEHKDKAIQCRWHPQDFSFIS 336 (350)
T ss_pred ceEEEEecccceEEEeecccchhhcCceE----------EEEeccCceEEEEecCccceeee
Confidence 99999999999999999987543332211 01125567788899997654444
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-19 Score=141.36 Aligned_cols=176 Identities=14% Similarity=0.202 Sum_probs=129.5
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEE
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWD 163 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd 163 (318)
..++++|+-||+||+|+++.... . .-+....|.++|.+++| +.+|..+++|+.|+.+++||
T Consensus 40 ~~~~~A~SWD~tVR~wevq~~g~-----------~-~~ka~~~~~~PvL~v~W-------sddgskVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 40 DNLLAAGSWDGTVRIWEVQNSGQ-----------L-VPKAQQSHDGPVLDVCW-------SDDGSKVFSGGCDKQAKLWD 100 (347)
T ss_pred CceEEecccCCceEEEEEecCCc-----------c-cchhhhccCCCeEEEEE-------ccCCceEEeeccCCceEEEE
Confidence 57888999999999999987321 1 11456679999999999 99999999999999999999
Q ss_pred CCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCc--eEEEEEeCCCcEEEeeeccCCCeeeEeeeeecc
Q 021036 164 GYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRL--MLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAH 241 (318)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~--~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h 241 (318)
+.+++.... ..|..+|..+.|- +.. .+|++|+.|.+|+.| |++... ++.++. -
T Consensus 101 L~S~Q~~~v---------------~~Hd~pvkt~~wv-----~~~~~~cl~TGSWDKTlKfW--D~R~~~--pv~t~~-L 155 (347)
T KOG0647|consen 101 LASGQVSQV---------------AAHDAPVKTCHWV-----PGMNYQCLVTGSWDKTLKFW--DTRSSN--PVATLQ-L 155 (347)
T ss_pred ccCCCeeee---------------eecccceeEEEEe-----cCCCcceeEecccccceeec--ccCCCC--eeeeee-c
Confidence 999965442 3466689999997 444 489999999999999 677665 666654 3
Q ss_pred cCceeEEEEcCCCCEEEEecCCCcEEEEEecCCcee-eeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEeC
Q 021036 242 DQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLS-QVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQI 318 (318)
Q Consensus 242 ~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~~ 318 (318)
.+.++++..- ..+++.+..++.|.+|+++++..+ .....+..- .+++|+..+|....|.|.|
T Consensus 156 PeRvYa~Dv~--~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~-------------Q~R~va~f~d~~~~alGsi 218 (347)
T KOG0647|consen 156 PERVYAADVL--YPMAVVATAERHIAVYNLENPPTEFKRIESPLKW-------------QTRCVACFQDKDGFALGSI 218 (347)
T ss_pred cceeeehhcc--CceeEEEecCCcEEEEEcCCCcchhhhhcCcccc-------------eeeEEEEEecCCceEeeee
Confidence 4566666543 557888889999999999764332 111122111 4577777776665565543
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.9e-19 Score=139.31 Aligned_cols=209 Identities=18% Similarity=0.242 Sum_probs=145.4
Q ss_pred eecccccCCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeec
Q 021036 61 AWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLS 140 (318)
Q Consensus 61 ~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~ 140 (318)
.+.|.-.+..|.+++++++++ +.++|+|+.|-+|+|||+... ..+..+..|.+.|+++.|
T Consensus 32 ~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~--------------~qlg~ll~HagsitaL~F---- 91 (362)
T KOG0294|consen 32 TLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKR--------------KQLGILLSHAGSITALKF---- 91 (362)
T ss_pred eeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccch--------------hhhcceeccccceEEEEe----
Confidence 334555677899999999986 599999999999999999873 456678889999999999
Q ss_pred CCCCCCC--cEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCC
Q 021036 141 SDSSNPQ--VLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSG 218 (318)
Q Consensus 141 ~~~~~~~--~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg 218 (318)
.+.. ..|++|+.||.|.+|+...-.++..++.|. +.|+.++++ |.+++.++.+.|+
T Consensus 92 ---~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~--------------~~Vt~lsiH-----PS~KLALsVg~D~ 149 (362)
T KOG0294|consen 92 ---YPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHK--------------GQVTDLSIH-----PSGKLALSVGGDQ 149 (362)
T ss_pred ---cCCcchhheeeecCCCcEEEEEcCCeEEeeeecccc--------------cccceeEec-----CCCceEEEEcCCc
Confidence 3333 279999999999999999888888877655 479999999 9999999999999
Q ss_pred cEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCC---------CCCCc-
Q 021036 219 SFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPT---------NTPGL- 288 (318)
Q Consensus 219 ~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~---------~~~~~- 288 (318)
.+++|+ +-.++...+..+. +. .+.+.|+|.|.+++.++.+ .|-+|.+.+-.+......+ +...+
T Consensus 150 ~lr~WN--LV~Gr~a~v~~L~-~~--at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~ 223 (362)
T KOG0294|consen 150 VLRTWN--LVRGRVAFVLNLK-NK--ATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENPKRILCATFLDGSELL 223 (362)
T ss_pred eeeeeh--hhcCccceeeccC-Cc--ceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhccccceeeeecCCceEE
Confidence 999995 4344322333332 22 2337777777766655544 4556665432221111000 00001
Q ss_pred ccc----------------ccCCCcceeeeEEEEc--CCCcEEEEEe
Q 021036 289 QSC----------------TDLPDAFVSCLGMAVS--PGNLVVAMVQ 317 (318)
Q Consensus 289 ~~~----------------~~~~~h~~~v~~v~~s--p~~~~l~~~~ 317 (318)
.|. ..+.+|..+|.++.+- |++.+|+++.
T Consensus 224 vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaS 270 (362)
T KOG0294|consen 224 VGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTAS 270 (362)
T ss_pred EecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEec
Confidence 111 1244788899988843 5778888763
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-19 Score=141.45 Aligned_cols=217 Identities=16% Similarity=0.241 Sum_probs=151.6
Q ss_pred cCCCCCccceEEeeCCCceeEeecCCCCCC--CceecchhccccccccceeeeecccccCCCCcccccccCCCC-CccEE
Q 021036 11 KMKDSNTHPTVAASKSKGNSITKIPSNCCL--PLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSN-WFSIL 87 (318)
Q Consensus 11 ~~~~~~~~~~~t~s~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~-~~~~l 87 (318)
........-+++|+.||.+.+||++..... ..+.++ +. |+ -....-.+|.+.|.++-+-| +..++
T Consensus 50 ~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k---~~-------c~--v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 50 QIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAK---HK-------CI--VAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eeccccceEEeecCCCccEEEEEeccccchhhccceeh---ee-------ee--ccccCCccceeeeeeeEEeeecCcee
Confidence 344445566899999999999999864311 111110 00 11 00011223555555554444 25788
Q ss_pred EEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCc
Q 021036 88 AVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQ 167 (318)
Q Consensus 88 ~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 167 (318)
.+++.|.++++||.++- +....|+ ..+.|++-++.|... .--++++|..|-.|++.|+.+|
T Consensus 118 tssSFDhtlKVWDtnTl--------------Q~a~~F~-me~~VYshamSp~a~----sHcLiA~gtr~~~VrLCDi~SG 178 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTL--------------QEAVDFK-MEGKVYSHAMSPMAM----SHCLIAAGTRDVQVRLCDIASG 178 (397)
T ss_pred ecccccceEEEeecccc--------------eeeEEee-cCceeehhhcChhhh----cceEEEEecCCCcEEEEeccCC
Confidence 99999999999999983 3334443 356788888866542 2247888889999999999999
Q ss_pred ceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeee----------E-ee
Q 021036 168 ELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFD----------K-VG 236 (318)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~----------~-~~ 236 (318)
..-+++.+|.. .|.++.|+ |...-.|++|+.||.|++||+....+-+. + +.
T Consensus 179 s~sH~LsGHr~--------------~vlaV~Ws----p~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~ 240 (397)
T KOG4283|consen 179 SFSHTLSGHRD--------------GVLAVEWS----PSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILK 240 (397)
T ss_pred cceeeeccccC--------------ceEEEEec----cCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccc
Confidence 99888877765 89999999 34556789999999999997654322211 1 11
Q ss_pred eeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCce
Q 021036 237 SYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSL 276 (318)
Q Consensus 237 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 276 (318)
.-.+|.+.|..++|+.++.++++++.|..+++|+...+..
T Consensus 241 ~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 241 TNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRN 280 (397)
T ss_pred ccccccceeeeeeecccchhhhhccCccceEEeecccCcc
Confidence 2346888999999999999999999999999999876443
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.8e-20 Score=148.87 Aligned_cols=197 Identities=20% Similarity=0.162 Sum_probs=148.6
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCc
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGK 95 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~ 95 (318)
..+.+++||.|++|++||+.++++...+.. |... +.++.|+|.. ..+|++|+.|++
T Consensus 255 ~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~----~~k~---Vq~l~wh~~~-----------------p~~LLsGs~D~~ 310 (463)
T KOG0270|consen 255 FRNVLASGSADKTVKLWDVDTGKPKSSITH----HGKK---VQTLEWHPYE-----------------PSVLLSGSYDGT 310 (463)
T ss_pred cceeEEecCCCceEEEEEcCCCCcceehhh----cCCc---eeEEEecCCC-----------------ceEEEeccccce
Confidence 357789999999999999999998777763 3444 4459999987 689999999999
Q ss_pred EEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCc-ceeeeec
Q 021036 96 VSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQ-ELQKSAE 174 (318)
Q Consensus 96 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~-~~~~~~~ 174 (318)
|.+.|.+..... -..+ ...+.|-.+.|.|++. ..++++..||+|+-+|+|+. +++.++.
T Consensus 311 V~l~D~R~~~~s-------------~~~w-k~~g~VEkv~w~~~se------~~f~~~tddG~v~~~D~R~~~~~vwt~~ 370 (463)
T KOG0270|consen 311 VALKDCRDPSNS-------------GKEW-KFDGEVEKVAWDPHSE------NSFFVSTDDGTVYYFDIRNPGKPVWTLK 370 (463)
T ss_pred EEeeeccCcccc-------------CceE-EeccceEEEEecCCCc------eeEEEecCCceEEeeecCCCCCceeEEE
Confidence 999999853321 1122 2356899999955543 35888899999999999975 6777766
Q ss_pred ccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCC
Q 021036 175 AHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDG 254 (318)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 254 (318)
.|. .+|++|+++ +....++++++.|+.|++|+++....+....+.++ -+...|.++.|+-
T Consensus 371 AHd--------------~~ISgl~~n----~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~--~~rl~c~~~~~~~ 430 (463)
T KOG0270|consen 371 AHD--------------DEISGLSVN----IQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFK--LGRLHCFALDPDV 430 (463)
T ss_pred ecc--------------CCcceEEec----CCCCcceeeccccceEEEEeecCCCCccccccccc--ccceeecccCCCc
Confidence 554 499999998 35578999999999999998776655422222222 1335677788874
Q ss_pred C-EEEEecCCCcEEEEEecCCce
Q 021036 255 C-CLYSCSQDNFVRSWIFHGNSL 276 (318)
Q Consensus 255 ~-~l~s~~~d~~v~iwd~~~~~~ 276 (318)
. +++.|+..+.+++||+.+...
T Consensus 431 a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 431 AFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred ceEEEecCccceEEEeecccChh
Confidence 4 678899999999999976543
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.7e-20 Score=157.48 Aligned_cols=100 Identities=21% Similarity=0.228 Sum_probs=82.1
Q ss_pred cCCCCceEEEEEeCCCcEEEeeeccCCC---eeeEeeeeecccCceeEEEEcCC-CCEEEEecCCCcEEEEEecCCceee
Q 021036 203 VQSPRLMLLAVGKGSGSFDLWKCDISCN---KFDKVGSYNAHDQVVTGLAWAFD-GCCLYSCSQDNFVRSWIFHGNSLSQ 278 (318)
Q Consensus 203 ~~~~~~~~l~~~~~dg~i~vw~~~~~~~---~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~~ 278 (318)
|+|-|...||+++.||.|++|.+..... ...+...+..|...|+++.|+|- ...|++++.|-+|++||+++.....
T Consensus 635 WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~ 714 (1012)
T KOG1445|consen 635 WDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYS 714 (1012)
T ss_pred cCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhh
Confidence 4467889999999999999996643322 12345567889999999999994 5689999999999999999876652
Q ss_pred eecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 279 VSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
.+.+|.+.|.+++|||||+.+|++
T Consensus 715 --------------~l~gHtdqIf~~AWSpdGr~~AtV 738 (1012)
T KOG1445|consen 715 --------------RLVGHTDQIFGIAWSPDGRRIATV 738 (1012)
T ss_pred --------------eeccCcCceeEEEECCCCcceeee
Confidence 456688899999999999999986
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.9e-20 Score=148.10 Aligned_cols=200 Identities=16% Similarity=0.191 Sum_probs=153.0
Q ss_pred CCCCcccccccCCCCCc-cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCC
Q 021036 68 LSSKKYPVPQNGSSNWF-SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNP 146 (318)
Q Consensus 68 ~~~~~~~v~~~~~s~~~-~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~ 146 (318)
+.+|.--|.+++-.|.. ..+++|+.||.|+|||+.+-+ ...++++|.+.|..|++ ..
T Consensus 62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~--------------~~~~f~AH~G~V~Gi~v-------~~- 119 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRE--------------CIRTFKAHEGLVRGICV-------TQ- 119 (433)
T ss_pred ccccccccchhhcCcchhhhhhccccCceEEEEehhhhh--------------hhheeecccCceeeEEe-------cc-
Confidence 56677778888888875 789999999999999999844 56789999999999999 44
Q ss_pred CcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeec
Q 021036 147 QVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCD 226 (318)
Q Consensus 147 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~ 226 (318)
..+++++.|.+|+.|.+.. ...+++.+.. .+..+.-+ ..+..|++++. .|.|||
T Consensus 120 -~~~~tvgdDKtvK~wk~~~-~p~~tilg~s---------------~~~gIdh~-----~~~~~FaTcGe--~i~IWD-- 173 (433)
T KOG0268|consen 120 -TSFFTVGDDKTVKQWKIDG-PPLHTILGKS---------------VYLGIDHH-----RKNSVFATCGE--QIDIWD-- 173 (433)
T ss_pred -cceEEecCCcceeeeeccC-Ccceeeeccc---------------cccccccc-----cccccccccCc--eeeecc--
Confidence 5699999999999999875 3444444332 45566665 56778888864 689994
Q ss_pred cCCCeeeEeeeeecccCceeEEEEcCCCC-EEEEecCCCcEEEEEecCCcee----------eeecCCCCCCcc-cccc-
Q 021036 227 ISCNKFDKVGSYNAHDQVVTGLAWAFDGC-CLYSCSQDNFVRSWIFHGNSLS----------QVSIPTNTPGLQ-SCTD- 293 (318)
Q Consensus 227 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~----------~~~~~~~~~~~~-~~~~- 293 (318)
.+... ++..+.-....|.++.|+|-.. .|++++.|+.|.+||++..... .+.++|+...+. +..+
T Consensus 174 ~~R~~--Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~ 251 (433)
T KOG0268|consen 174 EQRDN--PVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDH 251 (433)
T ss_pred cccCC--ccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccc
Confidence 44444 7777877778899999999755 7788889999999999875442 345556433332 3222
Q ss_pred ----------------CCCcceeeeEEEEcCCCcEEEEEe
Q 021036 294 ----------------LPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 294 ----------------~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
..+|.+.|.+|+|||.|+-+++|.
T Consensus 252 nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsgs 291 (433)
T KOG0268|consen 252 NLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGS 291 (433)
T ss_pred cceehhhhhhcccchhhcccceeEEEeccCCCcchhcccc
Confidence 238999999999999999888874
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.2e-19 Score=140.99 Aligned_cols=192 Identities=16% Similarity=0.201 Sum_probs=157.5
Q ss_pred ccccCCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCC
Q 021036 64 PVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDS 143 (318)
Q Consensus 64 p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~ 143 (318)
|..++.+|...|.++++-..|+.+++++.|.+..+||+++++ ++..+.+|....+.++-
T Consensus 264 Pl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge--------------~v~~LtGHd~ELtHcst------- 322 (481)
T KOG0300|consen 264 PLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGE--------------VVNILTGHDSELTHCST------- 322 (481)
T ss_pred eeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCc--------------eeccccCcchhcccccc-------
Confidence 445688899999999999999999999999999999999954 67889999999998888
Q ss_pred CCCCcEEEEEeCCCcEEEEECCCc-ceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEE
Q 021036 144 SNPQVLLVTGSSDGSVRIWDGYIQ-ELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDL 222 (318)
Q Consensus 144 ~~~~~~l~s~~~d~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~v 222 (318)
.|..+++++++.|.+.++||++.. ..+..|.+|. ..|++..|. .+..+++|+.|.+|++
T Consensus 323 HptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHt--------------dtVTS~vF~------~dd~vVSgSDDrTvKv 382 (481)
T KOG0300|consen 323 HPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHT--------------DTVTSVVFN------TDDRVVSGSDDRTVKV 382 (481)
T ss_pred CCcceEEEEeccCceeEeccchhhcceeeeecccc--------------cceeEEEEe------cCCceeecCCCceEEE
Confidence 788999999999999999999832 3344455544 489999996 5678999999999999
Q ss_pred eeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeee
Q 021036 223 WKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCL 302 (318)
Q Consensus 223 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 302 (318)
|| +++.+ .++.++. -..++..++.+..+..|+.--.+..|++||+++..+..++.... .+|..-|.
T Consensus 383 Wd--LrNMR-splATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsR----------qgHrRMV~ 448 (481)
T KOG0300|consen 383 WD--LRNMR-SPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSR----------QGHRRMVT 448 (481)
T ss_pred ee--ecccc-Ccceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccc----------cccceeee
Confidence 95 44433 2666665 45678899999888899999899999999999877776653332 35888899
Q ss_pred EEEEcCCC
Q 021036 303 GMAVSPGN 310 (318)
Q Consensus 303 ~v~~sp~~ 310 (318)
+++|..+.
T Consensus 449 c~AW~eeh 456 (481)
T KOG0300|consen 449 CCAWLEEH 456 (481)
T ss_pred eeeccccC
Confidence 99998653
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.2e-20 Score=147.00 Aligned_cols=224 Identities=17% Similarity=0.251 Sum_probs=150.2
Q ss_pred CCCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEec
Q 021036 12 MKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGG 91 (318)
Q Consensus 12 ~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~ 91 (318)
+-+.+.+.++++|+|.++|+|++++..|+..+. +..+|...|++++++.+|.+|++++
T Consensus 143 ~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG----------------------G~egHrdeVLSvD~~~~gd~i~ScG 200 (385)
T KOG1034|consen 143 FHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG----------------------GVEGHRDEVLSVDFSLDGDRIASCG 200 (385)
T ss_pred cCCCCCcEEEEecCCceEEEEeccCCeEEEEec----------------------ccccccCcEEEEEEcCCCCeeeccC
Confidence 334444568999999999999999998865553 3444555555555555569999999
Q ss_pred CCCcEEEEEccCCccccccccc-----------cCCceeEEe---eeccccccEEEEEeeeecCCCCCCCcEEEEEeCCC
Q 021036 92 RSGKVSLWRICVPKCYSVEDCK-----------VPTTAVLIG---LFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDG 157 (318)
Q Consensus 92 ~dg~i~iw~~~~~~~~~~~~~~-----------~~~~~~~~~---~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~ 157 (318)
.|.++++|++..++.....+.. ++......- +-.-|...|.|++| -|+++++-+.++
T Consensus 201 mDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw---------~gd~ilSkscen 271 (385)
T KOG1034|consen 201 MDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW---------FGDFILSKSCEN 271 (385)
T ss_pred CcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH---------HhhheeecccCc
Confidence 9999999999865543322111 111111111 22458899999999 568999999999
Q ss_pred cEEEEECC-CcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEee
Q 021036 158 SVRIWDGY-IQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVG 236 (318)
Q Consensus 158 ~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 236 (318)
.|..|... -++........+...+.+.++ ......+.-+.|.++ |-++.||.|...|.|++||++..... ...
T Consensus 272 aI~~w~pgkl~e~~~~vkp~es~~Ti~~~~-~~~~c~iWfirf~~d---~~~~~la~gnq~g~v~vwdL~~~ep~--~~t 345 (385)
T KOG1034|consen 272 AIVCWKPGKLEESIHNVKPPESATTILGEF-DYPMCDIWFIRFAFD---PWQKMLALGNQSGKVYVWDLDNNEPP--KCT 345 (385)
T ss_pred eEEEEecchhhhhhhccCCCccceeeeeEe-ccCccceEEEEEeec---HHHHHHhhccCCCcEEEEECCCCCCc--cCc
Confidence 99999873 222222222222222222221 223345666776643 56799999999999999966543331 222
Q ss_pred eeec--ccCceeEEEEcCCCCEEEEecCCCcEEEEEec
Q 021036 237 SYNA--HDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFH 272 (318)
Q Consensus 237 ~~~~--h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 272 (318)
++.. ....|...+|+.||.+|+...+|++|.-||..
T Consensus 346 tl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 346 TLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred eEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 3322 34578999999999999999999999999864
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.9e-19 Score=152.49 Aligned_cols=210 Identities=17% Similarity=0.198 Sum_probs=160.8
Q ss_pred cCCCCCccceEEeeCCCceeEeecCCCCCCCceecchhc-------cccc----cccceeeeecccc---cCCCCccccc
Q 021036 11 KMKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYA-------SRSA----MLHSLAVAWSPVL---RLSSKKYPVP 76 (318)
Q Consensus 11 ~~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~-------~~~~----~~~~~~~~w~p~~---~~~~~~~~v~ 76 (318)
.+.+.+...+++|+.|+++.+|...+..-+..+..++.. ..+. ..+.+...|-+.. .+++|..+|.
T Consensus 65 ~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~l~~~l~gH~asVW 144 (745)
T KOG0301|consen 65 CYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGELVYSLQGHTASVW 144 (745)
T ss_pred eeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecchhhhcccCCcchhee
Confidence 444566777999999999999988776555544332210 1111 1122345565432 2789999999
Q ss_pred ccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCC
Q 021036 77 QNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSD 156 (318)
Q Consensus 77 ~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d 156 (318)
.+..-+++ .++||+.|.+|++|.-.+ .++++.+|.+.|+.+++ -++ ..|++|+.|
T Consensus 145 Av~~l~e~-~~vTgsaDKtIklWk~~~----------------~l~tf~gHtD~VRgL~v-------l~~-~~flScsND 199 (745)
T KOG0301|consen 145 AVASLPEN-TYVTGSADKTIKLWKGGT----------------LLKTFSGHTDCVRGLAV-------LDD-SHFLSCSND 199 (745)
T ss_pred eeeecCCC-cEEeccCcceeeeccCCc----------------hhhhhccchhheeeeEE-------ecC-CCeEeecCC
Confidence 99999888 889999999999998743 66899999999999999 444 259999999
Q ss_pred CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEee
Q 021036 157 GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVG 236 (318)
Q Consensus 157 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 236 (318)
|.|++|++ +|+++....+|+. -+++++.. .++..+++++.|+++++|+.+ + +.+
T Consensus 200 g~Ir~w~~-~ge~l~~~~ghtn--------------~vYsis~~-----~~~~~Ivs~gEDrtlriW~~~----e--~~q 253 (745)
T KOG0301|consen 200 GSIRLWDL-DGEVLLEMHGHTN--------------FVYSISMA-----LSDGLIVSTGEDRTLRIWKKD----E--CVQ 253 (745)
T ss_pred ceEEEEec-cCceeeeeeccce--------------EEEEEEec-----CCCCeEEEecCCceEEEeecC----c--eEE
Confidence 99999999 6777777766654 78888876 788999999999999999533 2 555
Q ss_pred eeecccCceeEEEEcCCCCEEEEecCCCcEEEEEec
Q 021036 237 SYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFH 272 (318)
Q Consensus 237 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 272 (318)
.+.-....|+++.+-++|. |++|+.||.||||...
T Consensus 254 ~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 254 VITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred EEecCccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence 5554455899999988886 7889999999999876
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.7e-19 Score=142.54 Aligned_cols=160 Identities=19% Similarity=0.243 Sum_probs=114.0
Q ss_pred CCcccccccCCCCC-ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCc
Q 021036 70 SKKYPVPQNGSSNW-FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQV 148 (318)
Q Consensus 70 ~~~~~v~~~~~s~~-~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~ 148 (318)
+|...|-++.+||. ...|++|+.||+|+|||++.+.. +.....+.|.+.|+.|.| +..-.
T Consensus 255 gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~------------~~~~~~kAh~sDVNVISW-------nr~~~ 315 (440)
T KOG0302|consen 255 GHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK------------KAAVSTKAHNSDVNVISW-------NRREP 315 (440)
T ss_pred ccccchhhhccCCccCceEEeeecCceEEEEEecCCCc------------cceeEeeccCCceeeEEc-------cCCcc
Confidence 34444444444443 68999999999999999998631 222344899999999999 66666
Q ss_pred EEEEEeCCCcEEEEECCCcc---eeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeee
Q 021036 149 LLVTGSSDGSVRIWDGYIQE---LQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKC 225 (318)
Q Consensus 149 ~l~s~~~d~~v~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~ 225 (318)
+|++|+.||+++|||+++-+ .+..+ ..|..+|+++.|+ |.+...|++++.|.+|.+||+
T Consensus 316 lLasG~DdGt~~iwDLR~~~~~~pVA~f--------------k~Hk~pItsieW~----p~e~s~iaasg~D~QitiWDl 377 (440)
T KOG0302|consen 316 LLASGGDDGTLSIWDLRQFKSGQPVATF--------------KYHKAPITSIEWH----PHEDSVIAASGEDNQITIWDL 377 (440)
T ss_pred eeeecCCCceEEEEEhhhccCCCcceeE--------------EeccCCeeEEEec----cccCceEEeccCCCcEEEEEe
Confidence 99999999999999999643 33334 4466699999999 355678999999999999987
Q ss_pred ccCCC------ee------eEeeeeecc--cCceeEEEEcCC-CCEEEEecCCCcE
Q 021036 226 DISCN------KF------DKVGSYNAH--DQVVTGLAWAFD-GCCLYSCSQDNFV 266 (318)
Q Consensus 226 ~~~~~------~~------~~~~~~~~h--~~~v~~~~~~~~-~~~l~s~~~d~~v 266 (318)
.+... .. .+.+-+.-| ...+-.+.|+++ ..++++.+.||.-
T Consensus 378 svE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfn 433 (440)
T KOG0302|consen 378 SVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFN 433 (440)
T ss_pred eccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEeccccee
Confidence 54332 00 011122234 235778999997 3378888888743
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-19 Score=152.35 Aligned_cols=242 Identities=19% Similarity=0.148 Sum_probs=173.7
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeeccccc------------------------------
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLR------------------------------ 67 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~------------------------------ 67 (318)
.-+++||.||++|||.+.++.|+..+.... .+.|++|+|...
T Consensus 413 ~wlasGsdDGtvriWEi~TgRcvr~~~~d~--------~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~e 484 (733)
T KOG0650|consen 413 EWLASGSDDGTVRIWEIATGRCVRTVQFDS--------EIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKE 484 (733)
T ss_pred ceeeecCCCCcEEEEEeecceEEEEEeecc--------eeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhh
Confidence 346999999999999999999988776532 134455655432
Q ss_pred --------------------------------CCCCcccccccCCCCCccEEEEecC---CCcEEEEEccCCcccccccc
Q 021036 68 --------------------------------LSSKKYPVPQNGSSNWFSILAVGGR---SGKVSLWRICVPKCYSVEDC 112 (318)
Q Consensus 68 --------------------------------~~~~~~~v~~~~~s~~~~~l~~g~~---dg~i~iw~~~~~~~~~~~~~ 112 (318)
...|..+|..+.+...|.||++..- ...|.|.++....
T Consensus 485 ll~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~------- 557 (733)
T KOG0650|consen 485 LLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRK------- 557 (733)
T ss_pred hhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccccc-------
Confidence 1124456777777777778777543 3356777776532
Q ss_pred ccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeeccc
Q 021036 113 KVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTV 192 (318)
Q Consensus 113 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (318)
....|+...+-|.++.| .|...+|++++. ..|+|||+.....++.+.....
T Consensus 558 -------sQ~PF~kskG~vq~v~F-------HPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~k-------------- 608 (733)
T KOG0650|consen 558 -------SQSPFRKSKGLVQRVKF-------HPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSK-------------- 608 (733)
T ss_pred -------ccCchhhcCCceeEEEe-------cCCCceEEEEec-cceEEEehhHHHHHHHHhcCCe--------------
Confidence 22334445678999999 555557777765 6899999998776666543332
Q ss_pred ceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEec
Q 021036 193 PISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFH 272 (318)
Q Consensus 193 ~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 272 (318)
.|..++++ |.|..|+.|+.|+.+..||+++.+. +..++..|...+++|+|++.-.+|++|+.||++.+|--.
T Consensus 609 wiS~msih-----p~GDnli~gs~d~k~~WfDldlssk---Pyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~ 680 (733)
T KOG0650|consen 609 WISSMSIH-----PNGDNLILGSYDKKMCWFDLDLSSK---PYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGM 680 (733)
T ss_pred eeeeeeec-----CCCCeEEEecCCCeeEEEEcccCcc---hhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeee
Confidence 78999999 9999999999999999998887765 566788899999999999999999999999999998532
Q ss_pred C-CceeeeecCCCCCCccccccCCCccee----eeEEEEcCCCcEEEEEe
Q 021036 273 G-NSLSQVSIPTNTPGLQSCTDLPDAFVS----CLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 273 ~-~~~~~~~~~~~~~~~~~~~~~~~h~~~----v~~v~~sp~~~~l~~~~ 317 (318)
- ..+. ..+.++-...+++|... |..+.|+|...+|.++.
T Consensus 681 VY~Dl~------qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAG 724 (733)
T KOG0650|consen 681 VYNDLL------QNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAG 724 (733)
T ss_pred eehhhh------cCCceEeeeeccCceeecccceEeecccCCCceEEecC
Confidence 1 0010 01111122345556544 89999999999988764
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.3e-19 Score=138.35 Aligned_cols=228 Identities=14% Similarity=0.107 Sum_probs=168.4
Q ss_pred CCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCC
Q 021036 14 DSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRS 93 (318)
Q Consensus 14 ~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~d 93 (318)
...+...++.|.+.-|.+||.-+++....+. .|.|.+.+....++.|+|++ ..|++| ..
T Consensus 120 qP~t~l~a~ssr~~PIh~wdaftG~lraSy~--~ydh~de~taAhsL~Fs~DG------------------eqlfaG-yk 178 (406)
T KOG2919|consen 120 QPSTNLFAVSSRDQPIHLWDAFTGKLRASYR--AYDHQDEYTAAHSLQFSPDG------------------EQLFAG-YK 178 (406)
T ss_pred CCccceeeeccccCceeeeeccccccccchh--hhhhHHhhhhheeEEecCCC------------------CeEeec-cc
Confidence 4455667889999999999999998654443 56677777777788888888 888866 56
Q ss_pred CcEEEEEccC-CccccccccccCCceeEEeee-----ccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCc
Q 021036 94 GKVSLWRICV-PKCYSVEDCKVPTTAVLIGLF-----QAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQ 167 (318)
Q Consensus 94 g~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 167 (318)
..|+++|+.. |... .+... .+..+-|.|++|+| .+...++.++...++-|+.-..+
T Consensus 179 rcirvFdt~RpGr~c------------~vy~t~~~~k~gq~giisc~a~sP------~~~~~~a~gsY~q~~giy~~~~~ 240 (406)
T KOG2919|consen 179 RCIRVFDTSRPGRDC------------PVYTTVTKGKFGQKGIISCFAFSP------MDSKTLAVGSYGQRVGIYNDDGR 240 (406)
T ss_pred ceEEEeeccCCCCCC------------cchhhhhcccccccceeeeeeccC------CCCcceeeecccceeeeEecCCC
Confidence 7899999943 3211 11111 23467789999933 34457999999999999988888
Q ss_pred ceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe-CCCcEEEeeeccCCCeeeEeeeeecccC-ce
Q 021036 168 ELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK-GSGSFDLWKCDISCNKFDKVGSYNAHDQ-VV 245 (318)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~h~~-~v 245 (318)
..+..+.+| .+.|+.++|. ++|+.|++|. .+-.|..| |++..+ .++..+..|.. .-
T Consensus 241 ~pl~llggh--------------~gGvThL~~~-----edGn~lfsGaRk~dkIl~W--DiR~~~-~pv~~L~rhv~~TN 298 (406)
T KOG2919|consen 241 RPLQLLGGH--------------GGGVTHLQWC-----EDGNKLFSGARKDDKILCW--DIRYSR-DPVYALERHVGDTN 298 (406)
T ss_pred Cceeeeccc--------------CCCeeeEEec-----cCcCeecccccCCCeEEEE--eehhcc-chhhhhhhhccCcc
Confidence 777766554 4599999999 9999999998 58889999 555543 36777777765 33
Q ss_pred eEE--EEcCCCCEEEEecCCCcEEEEEecC-CceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 246 TGL--AWAFDGCCLYSCSQDNFVRSWIFHG-NSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 246 ~~~--~~~~~~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
..| ...|++++|++|+.||.|++||+++ +.... .+..|+..|+.|+++|--.++|++
T Consensus 299 QRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~s--------------v~~~~sd~vNgvslnP~mpilats 358 (406)
T KOG2919|consen 299 QRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVS--------------VTGNYSDTVNGVSLNPIMPILATS 358 (406)
T ss_pred ceEEEecCCCCceeeccCCCccEEEEecCCCCCccc--------------ccccccccccceecCcccceeeec
Confidence 334 4467899999999999999999987 44221 112255688999999988888775
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.3e-19 Score=149.20 Aligned_cols=240 Identities=15% Similarity=0.118 Sum_probs=153.3
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCC-ccEEEEecCCC
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNW-FSILAVGGRSG 94 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~-~~~l~~g~~dg 94 (318)
....+++++.|.+++.||+.+.++.-.- .+.+|.+.|.+++|.+. ...|++|+.||
T Consensus 111 ge~~lVsasGDsT~r~Wdvk~s~l~G~~-----------------------~~~GH~~SvkS~cf~~~n~~vF~tGgRDg 167 (720)
T KOG0321|consen 111 GESLLVSASGDSTIRPWDVKTSRLVGGR-----------------------LNLGHTGSVKSECFMPTNPAVFCTGGRDG 167 (720)
T ss_pred CceeEEEccCCceeeeeeeccceeecce-----------------------eecccccccchhhhccCCCcceeeccCCC
Confidence 4456899999999999999988763331 12234444455555443 67899999999
Q ss_pred cEEEEEccCCccccccc----------ccc---CCceeEEeeeccccccEEE---EEeeeecCCCCCCCcEEEEEeC-CC
Q 021036 95 KVSLWRICVPKCYSVED----------CKV---PTTAVLIGLFQAHNSWITS---ISLAVLSSDSSNPQVLLVTGSS-DG 157 (318)
Q Consensus 95 ~i~iw~~~~~~~~~~~~----------~~~---~~~~~~~~~~~~h~~~v~~---~~~~p~~~~~~~~~~~l~s~~~-d~ 157 (318)
.|.|||+.....-..++ ..+ ..-.+.++..+.+...|.+ +.+ ..+...|++++. |+
T Consensus 168 ~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~-------fkDe~tlaSaga~D~ 240 (720)
T KOG0321|consen 168 EILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVL-------FKDESTLASAGAADS 240 (720)
T ss_pred cEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEE-------EeccceeeeccCCCc
Confidence 99999997543110000 100 0011222333455555544 444 467778999887 99
Q ss_pred cEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeee
Q 021036 158 SVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGS 237 (318)
Q Consensus 158 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 237 (318)
.|++||++............... . .........+.++..+ ..|.+|++.+.|+.|++| ++......++..
T Consensus 241 ~iKVWDLRk~~~~~r~ep~~~~~--~-~t~skrs~G~~nL~lD-----ssGt~L~AsCtD~sIy~y--nm~s~s~sP~~~ 310 (720)
T KOG0321|consen 241 TIKVWDLRKNYTAYRQEPRGSDK--Y-PTHSKRSVGQVNLILD-----SSGTYLFASCTDNSIYFY--NMRSLSISPVAE 310 (720)
T ss_pred ceEEEeecccccccccCCCcccC--c-cCcccceeeeEEEEec-----CCCCeEEEEecCCcEEEE--eccccCcCchhh
Confidence 99999999765443221111000 0 0001123367778777 778888888889999999 565555557777
Q ss_pred eecccCcee--EEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcC
Q 021036 238 YNAHDQVVT--GLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSP 308 (318)
Q Consensus 238 ~~~h~~~v~--~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp 308 (318)
+.++...-. .-..+|++.++++|+.|...++|.+..-..... -+.+|.-.|++|+|.|
T Consensus 311 ~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~-------------~l~Ght~eVt~V~w~p 370 (720)
T KOG0321|consen 311 FSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPA-------------LLLGHTREVTTVRWLP 370 (720)
T ss_pred ccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChh-------------hhhCcceEEEEEeecc
Confidence 666543211 124689999999999999999999876444321 2345777899999998
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.3e-19 Score=139.42 Aligned_cols=164 Identities=13% Similarity=0.259 Sum_probs=119.2
Q ss_pred CCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcE
Q 021036 70 SKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVL 149 (318)
Q Consensus 70 ~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~ 149 (318)
.|..++..+.....+.+|++++.|..|.||+++ | +.+..+......-+..+. +|+|++
T Consensus 185 kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-G--------------q~L~~idtnq~~n~~aav-------SP~GRF 242 (420)
T KOG2096|consen 185 KHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-G--------------QLLQSIDTNQSSNYDAAV-------SPDGRF 242 (420)
T ss_pred hcccceEEEeecCCceEEEEecCCCcEEEEecC-C--------------ceeeeeccccccccceee-------CCCCcE
Confidence 356677788888889999999999999999998 3 455566555556677788 999999
Q ss_pred EEEEeCCCcEEEEECCC---cceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeec
Q 021036 150 LVTGSSDGSVRIWDGYI---QELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCD 226 (318)
Q Consensus 150 l~s~~~d~~v~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~ 226 (318)
+++++----|++|.+-- |+....-.. ....+|...|..++|+ ++...+++.+.||++++||.|
T Consensus 243 ia~~gFTpDVkVwE~~f~kdG~fqev~rv---------f~LkGH~saV~~~aFs-----n~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 243 IAVSGFTPDVKVWEPIFTKDGTFQEVKRV---------FSLKGHQSAVLAAAFS-----NSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred EEEecCCCCceEEEEEeccCcchhhhhhh---------heeccchhheeeeeeC-----CCcceeEEEecCCcEEEeecc
Confidence 99999999999998642 211111000 1135677799999999 999999999999999999965
Q ss_pred cCCCeee------------------Ee-------------------eee------------ecccCceeEEEEcCCCCEE
Q 021036 227 ISCNKFD------------------KV-------------------GSY------------NAHDQVVTGLAWAFDGCCL 257 (318)
Q Consensus 227 ~~~~~~~------------------~~-------------------~~~------------~~h~~~v~~~~~~~~~~~l 257 (318)
.+-..-+ ++ +.+ ..|...|.+++|+++|+++
T Consensus 309 VrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~ 388 (420)
T KOG2096|consen 309 VRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYI 388 (420)
T ss_pred ceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEE
Confidence 4311000 00 000 1367788899999999998
Q ss_pred EEecCCCcEEEEE
Q 021036 258 YSCSQDNFVRSWI 270 (318)
Q Consensus 258 ~s~~~d~~v~iwd 270 (318)
++++ |..++++.
T Consensus 389 atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 389 ATCG-DRYVRVIR 400 (420)
T ss_pred eeec-ceeeeeec
Confidence 8887 55666664
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4e-19 Score=147.13 Aligned_cols=186 Identities=15% Similarity=0.199 Sum_probs=142.5
Q ss_pred cccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeC
Q 021036 76 PQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSS 155 (318)
Q Consensus 76 ~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~ 155 (318)
+|+.......++++|+..+.|+|||++... ..+.+++|.+.|+++.| .....+|++++.
T Consensus 83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl--------------~hr~lkdh~stvt~v~Y-------N~~DeyiAsvs~ 141 (673)
T KOG4378|consen 83 FCVACASQSLYEISGGQSGCVKIWDLRAKL--------------IHRFLKDHQSTVTYVDY-------NNTDEYIASVSD 141 (673)
T ss_pred HHHhhhhcceeeeccCcCceeeehhhHHHH--------------HhhhccCCcceeEEEEe-------cCCcceeEEecc
Confidence 344444445899999999999999999633 44678899999999999 788889999999
Q ss_pred CCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEe
Q 021036 156 DGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKV 235 (318)
Q Consensus 156 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 235 (318)
.|.|.|..+.++.....+... ....|..+.|+ +....+|.+++.+|.|.+|| ...... ..
T Consensus 142 gGdiiih~~~t~~~tt~f~~~-------------sgqsvRll~ys----~skr~lL~~asd~G~VtlwD--v~g~sp-~~ 201 (673)
T KOG4378|consen 142 GGDIIIHGTKTKQKTTTFTID-------------SGQSVRLLRYS----PSKRFLLSIASDKGAVTLWD--VQGMSP-IF 201 (673)
T ss_pred CCcEEEEecccCccccceecC-------------CCCeEEEeecc----cccceeeEeeccCCeEEEEe--ccCCCc-cc
Confidence 999999999888766555432 12356788898 23456778899999999995 444442 22
Q ss_pred eeeecccCceeEEEEcCCC-CEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEE
Q 021036 236 GSYNAHDQVVTGLAWAFDG-CCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVA 314 (318)
Q Consensus 236 ~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~ 314 (318)
.-.+.|..+...++|+|.. .+|++.+.|..|.+||.+........... .+...|+|.++|.+|+
T Consensus 202 ~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~---------------~Plstvaf~~~G~~L~ 266 (673)
T KOG4378|consen 202 HASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYS---------------HPLSTVAFSECGTYLC 266 (673)
T ss_pred chhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeec---------------CCcceeeecCCceEEE
Confidence 3346799999999999964 58899999999999999865443222111 2678999999999999
Q ss_pred EEe
Q 021036 315 MVQ 317 (318)
Q Consensus 315 ~~~ 317 (318)
.|.
T Consensus 267 aG~ 269 (673)
T KOG4378|consen 267 AGN 269 (673)
T ss_pred eec
Confidence 874
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.5e-19 Score=141.11 Aligned_cols=236 Identities=13% Similarity=0.153 Sum_probs=158.4
Q ss_pred cce-EEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCC-ccEEEEecCCCc
Q 021036 18 HPT-VAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNW-FSILAVGGRSGK 95 (318)
Q Consensus 18 ~~~-~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~-~~~l~~g~~dg~ 95 (318)
+|+ ++|+.-|-|||.|+.++++...+. +|..+|..+.+.|. .+++++++.|.+
T Consensus 105 ~p~la~~G~~GvIrVid~~~~~~~~~~~-------------------------ghG~sINeik~~p~~~qlvls~SkD~s 159 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVSGQCSKNYR-------------------------GHGGSINEIKFHPDRPQLVLSASKDHS 159 (385)
T ss_pred CeeEEeecceeEEEEEecchhhhcccee-------------------------ccCccchhhhcCCCCCcEEEEecCCce
Confidence 443 445566777777777776644433 33334444444443 589999999999
Q ss_pred EEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecc
Q 021036 96 VSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEA 175 (318)
Q Consensus 96 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 175 (318)
||+|++++..|+ ....-+.+|.+.|.++.| +.+|++|++++.|.++++|++...+....++.
T Consensus 160 vRlwnI~~~~Cv-----------~VfGG~egHrdeVLSvD~-------~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~ 221 (385)
T KOG1034|consen 160 VRLWNIQTDVCV-----------AVFGGVEGHRDEVLSVDF-------SLDGDRIASCGMDHSLKLWRLNVKEFKNKLEL 221 (385)
T ss_pred EEEEeccCCeEE-----------EEecccccccCcEEEEEE-------cCCCCeeeccCCcceEEEEecChhHHhhhhhh
Confidence 999999997763 234445789999999999 99999999999999999999985432221110
Q ss_pred --------ccccccc----c--eeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeee-ccCCC---------e
Q 021036 176 --------HCVPFSL----L--KEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKC-DISCN---------K 231 (318)
Q Consensus 176 --------~~~~~~~----~--~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~-~~~~~---------~ 231 (318)
...|+.. + ......|...|.|+.|- |+++++-+.++.|..|.. .+... .
T Consensus 222 s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~-------gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~ 294 (385)
T KOG1034|consen 222 SITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF-------GDFILSKSCENAIVCWKPGKLEESIHNVKPPESA 294 (385)
T ss_pred hcccCCCCccCcCCccccccccccccccccchHHHHHHH-------hhheeecccCceEEEEecchhhhhhhccCCCccc
Confidence 0111111 0 01345677777787775 689999999999999953 11111 0
Q ss_pred eeEeeeeecccCceeEEEE--cCCCCEEEEecCCCcEEEEEecCCcee---eeecCCCCCCccccccCCCcceeeeEEEE
Q 021036 232 FDKVGSYNAHDQVVTGLAW--AFDGCCLYSCSQDNFVRSWIFHGNSLS---QVSIPTNTPGLQSCTDLPDAFVSCLGMAV 306 (318)
Q Consensus 232 ~~~~~~~~~h~~~v~~~~~--~~~~~~l~s~~~d~~v~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 306 (318)
...+.++......|+-+.| +|-+++||.|.+.|.|.+||++..... ++..+... ..|...+|
T Consensus 295 ~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~-------------~tVRQ~sf 361 (385)
T KOG1034|consen 295 TTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSG-------------STVRQTSF 361 (385)
T ss_pred eeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEecccc-------------ceeeeeee
Confidence 1123334444556666654 556889999999999999999875432 22222222 48899999
Q ss_pred cCCCcEEEEE
Q 021036 307 SPGNLVVAMV 316 (318)
Q Consensus 307 sp~~~~l~~~ 316 (318)
+.||.+|+.+
T Consensus 362 S~dgs~lv~v 371 (385)
T KOG1034|consen 362 SRDGSILVLV 371 (385)
T ss_pred cccCcEEEEE
Confidence 9999987754
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-18 Score=152.92 Aligned_cols=188 Identities=17% Similarity=0.199 Sum_probs=143.3
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEEC
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDG 164 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~ 164 (318)
.+|++++.||.|++|+...... ....+..+...|.+++. .+.+|++|+.+++|.+|.+
T Consensus 26 efi~tcgsdg~ir~~~~~sd~e-------------~P~ti~~~g~~v~~ia~---------~s~~f~~~s~~~tv~~y~f 83 (933)
T KOG1274|consen 26 EFICTCGSDGDIRKWKTNSDEE-------------EPETIDISGELVSSIAC---------YSNHFLTGSEQNTVLRYKF 83 (933)
T ss_pred CEEEEecCCCceEEeecCCccc-------------CCchhhccCceeEEEee---------cccceEEeeccceEEEeeC
Confidence 8999999999999999876521 11223337778888877 3448999999999999999
Q ss_pred CCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCc
Q 021036 165 YIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQV 244 (318)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~ 244 (318)
.+++....+.... .++++++++ .+|+++|.|+.|-.|++-+ ..+.. ....+.+|.++
T Consensus 84 ps~~~~~iL~Rft--------------lp~r~~~v~-----g~g~~iaagsdD~~vK~~~--~~D~s--~~~~lrgh~ap 140 (933)
T KOG1274|consen 84 PSGEEDTILARFT--------------LPIRDLAVS-----GSGKMIAAGSDDTAVKLLN--LDDSS--QEKVLRGHDAP 140 (933)
T ss_pred CCCCccceeeeee--------------ccceEEEEe-----cCCcEEEeecCceeEEEEe--ccccc--hheeecccCCc
Confidence 8876543333222 288999999 9999999999999999984 44444 45678999999
Q ss_pred eeEEEEcCCCCEEEEecCCCcEEEEEecCCce-------------------eeeecCCCCCCcc--ccc-----------
Q 021036 245 VTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSL-------------------SQVSIPTNTPGLQ--SCT----------- 292 (318)
Q Consensus 245 v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~-------------------~~~~~~~~~~~~~--~~~----------- 292 (318)
|.++.|+|.+.+||+.+-||.|++||+.++.+ .+..++|.+..++ +..
T Consensus 141 Vl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~w 220 (933)
T KOG1274|consen 141 VLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGW 220 (933)
T ss_pred eeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCc
Confidence 99999999999999999999999999986443 2344566644333 111
Q ss_pred ----cCC--CcceeeeEEEEcCCCcEEEEEe
Q 021036 293 ----DLP--DAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 293 ----~~~--~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
.++ .+...+..++|+|+|+|||++.
T Consensus 221 e~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~ 251 (933)
T KOG1274|consen 221 ELQFKLRDKLSSSKFSDLQWSPNGKYIAAST 251 (933)
T ss_pred eeheeecccccccceEEEEEcCCCcEEeeec
Confidence 011 3445599999999999999975
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-18 Score=134.02 Aligned_cols=237 Identities=16% Similarity=0.127 Sum_probs=155.9
Q ss_pred ccceEEeeCCCceeEeecCCCCC--CCceecchhccccccccceeeeecccccCCCCcccccccCCCC-CccEEEEecCC
Q 021036 17 THPTVAASKSKGNSITKIPSNCC--LPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSN-WFSILAVGGRS 93 (318)
Q Consensus 17 ~~~~~t~s~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~-~~~~l~~g~~d 93 (318)
..|-+.++.+..+|+|.+..... ........ + ....+..|+++.++.. +.++|.+++-|
T Consensus 111 ~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~--~----------------kns~~~aPlTSFDWne~dp~~igtSSiD 172 (364)
T KOG0290|consen 111 VYPDLLATSSDFLRLWRIGDEESRVELQSVLNN--N----------------KNSEFCAPLTSFDWNEVDPNLIGTSSID 172 (364)
T ss_pred cCcchhhcccCeEEEEeccCcCCceehhhhhcc--C----------------cccccCCcccccccccCCcceeEeeccc
Confidence 45556677777899998764321 11111100 0 1112333444444433 26899999999
Q ss_pred CcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCC-cEEEEEeCCCcEEEEECCCcceeee
Q 021036 94 GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQ-VLLVTGSSDGSVRIWDGYIQELQKS 172 (318)
Q Consensus 94 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~ 172 (318)
-+..|||++++.. +.....+.+|...|..++| ..++ +.|++.+.||.||+||++..+--..
T Consensus 173 TTCTiWdie~~~~-----------~~vkTQLIAHDKEV~DIaf-------~~~s~~~FASvgaDGSvRmFDLR~leHSTI 234 (364)
T KOG0290|consen 173 TTCTIWDIETGVS-----------GTVKTQLIAHDKEVYDIAF-------LKGSRDVFASVGADGSVRMFDLRSLEHSTI 234 (364)
T ss_pred CeEEEEEEeeccc-----------cceeeEEEecCcceeEEEe-------ccCccceEEEecCCCcEEEEEecccccceE
Confidence 9999999998632 2234567799999999999 5543 7899999999999999997543222
Q ss_pred ecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCC-CcEEEeeeccCCCeeeEeeeeecccCceeEEEEc
Q 021036 173 AEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGS-GSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWA 251 (318)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 251 (318)
+-.... ...+...++|+ ..+.+++|+-..| ..|.+- |++... .++.++++|.+.|.+++|.
T Consensus 235 IYE~p~-----------~~~pLlRLswn----kqDpnymATf~~dS~~V~iL--DiR~P~-tpva~L~~H~a~VNgIaWa 296 (364)
T KOG0290|consen 235 IYEDPS-----------PSTPLLRLSWN----KQDPNYMATFAMDSNKVVIL--DIRVPC-TPVARLRNHQASVNGIAWA 296 (364)
T ss_pred EecCCC-----------CCCcceeeccC----cCCchHHhhhhcCCceEEEE--EecCCC-cceehhhcCcccccceEec
Confidence 211111 13366777787 3566788876544 457776 554432 3788999999999999999
Q ss_pred CC-CCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcC-CCcEEEEE
Q 021036 252 FD-GCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSP-GNLVVAMV 316 (318)
Q Consensus 252 ~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~~~ 316 (318)
|. ...|++++.|..+.|||+..-.... ...+.++ -...+.|+.+.|++ .+.+|+.+
T Consensus 297 PhS~~hictaGDD~qaliWDl~q~~~~~----~~dPila-----y~a~~EVNqi~Ws~~~~Dwiai~ 354 (364)
T KOG0290|consen 297 PHSSSHICTAGDDCQALIWDLQQMPREN----GEDPILA-----YTAGGEVNQIQWSSSQPDWIAIC 354 (364)
T ss_pred CCCCceeeecCCcceEEEEecccccccC----CCCchhh-----hhccceeeeeeecccCCCEEEEE
Confidence 97 5589999999999999997632210 0001010 01224789999997 67787765
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.6e-18 Score=144.27 Aligned_cols=242 Identities=19% Similarity=0.169 Sum_probs=172.4
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCC-----------------------CCccc
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLS-----------------------SKKYP 74 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~-----------------------~~~~~ 74 (318)
+.++.+-.||.|.||++..+-+....-. . +.... +-.++|.+.+++. ...++
T Consensus 38 ~~lAvsRt~g~IEiwN~~~~w~~~~vi~-g-~~drs---IE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~ 112 (691)
T KOG2048|consen 38 NQLAVSRTDGNIEIWNLSNNWFLEPVIH-G-PEDRS---IESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGA 112 (691)
T ss_pred CceeeeccCCcEEEEccCCCceeeEEEe-c-CCCCc---eeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcc
Confidence 3478888999999999988654433221 1 12222 2237777665522 23457
Q ss_pred ccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEe
Q 021036 75 VPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS 154 (318)
Q Consensus 75 v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~ 154 (318)
+.+++.++.+..++.|+.||.+.+++...+. ....+.+....++|.+++| .+++..|++|+
T Consensus 113 IWsiai~p~~~~l~IgcddGvl~~~s~~p~~------------I~~~r~l~rq~sRvLslsw-------~~~~~~i~~Gs 173 (691)
T KOG2048|consen 113 IWSIAINPENTILAIGCDDGVLYDFSIGPDK------------ITYKRSLMRQKSRVLSLSW-------NPTGTKIAGGS 173 (691)
T ss_pred eeEEEeCCccceEEeecCCceEEEEecCCce------------EEEEeecccccceEEEEEe-------cCCccEEEecc
Confidence 8899999999999999999988888887655 3455566667899999999 89999999999
Q ss_pred CCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeE
Q 021036 155 SDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDK 234 (318)
Q Consensus 155 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 234 (318)
.||.|++||..+++.+......... .......-|.++.+- ....+++|+..|+|.+| |...+. .
T Consensus 174 ~Dg~Iriwd~~~~~t~~~~~~~~d~------l~k~~~~iVWSv~~L------rd~tI~sgDS~G~V~FW--d~~~gT--L 237 (691)
T KOG2048|consen 174 IDGVIRIWDVKSGQTLHIITMQLDR------LSKREPTIVWSVLFL------RDSTIASGDSAGTVTFW--DSIFGT--L 237 (691)
T ss_pred cCceEEEEEcCCCceEEEeeecccc------cccCCceEEEEEEEe------ecCcEEEecCCceEEEE--cccCcc--h
Confidence 9999999999998877633222110 001112245666664 34679999999999999 666666 6
Q ss_pred eeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCC
Q 021036 235 VGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPG 309 (318)
Q Consensus 235 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 309 (318)
+..+..|.+.|.+++..+++.++++++.|+.|..|...++...-+... ....|...|.+++..++
T Consensus 238 iqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~----------~r~~h~hdvrs~av~~~ 302 (691)
T KOG2048|consen 238 IQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINS----------RRDLHAHDVRSMAVIEN 302 (691)
T ss_pred hhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeec----------cccCCcccceeeeeecc
Confidence 778888999999999999999999999999999998876543211111 12234456777777665
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1e-17 Score=146.69 Aligned_cols=245 Identities=21% Similarity=0.285 Sum_probs=177.2
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEE
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVS 97 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~ 97 (318)
+-++.|++.|.+.+|++.+++.+..+.. +.+ .++++.-+|.. ..+|.|..+|+|.
T Consensus 173 NKIvvGs~~G~lql~Nvrt~K~v~~f~~----~~s---~IT~ieqsPaL------------------DVVaiG~~~G~Vi 227 (910)
T KOG1539|consen 173 NKIVVGSSQGRLQLWNVRTGKVVYTFQE----FFS---RITAIEQSPAL------------------DVVAIGLENGTVI 227 (910)
T ss_pred eeEEEeecCCcEEEEEeccCcEEEEecc----ccc---ceeEeccCCcc------------------eEEEEeccCceEE
Confidence 3379999999999999999998777654 222 25568888888 9999999999999
Q ss_pred EEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCc-EEEEEeCCCcEEEEECCCcceeeeec-c
Q 021036 98 LWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQV-LLVTGSSDGSVRIWDGYIQELQKSAE-A 175 (318)
Q Consensus 98 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~-~ 175 (318)
|++++.++ .+.+++...++|+.++| ..+|. .+++|+..|.+.+||++..+....+. .
T Consensus 228 ifNlK~dk--------------il~sFk~d~g~VtslSF-------rtDG~p~las~~~~G~m~~wDLe~kkl~~v~~na 286 (910)
T KOG1539|consen 228 IFNLKFDK--------------ILMSFKQDWGRVTSLSF-------RTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNA 286 (910)
T ss_pred EEEcccCc--------------EEEEEEccccceeEEEe-------ccCCCeeEEeccCCceEEEEEcCCCeeeeeeecc
Confidence 99999854 56677755699999999 77775 56666677999999998655443221 1
Q ss_pred ----------------------------------------------cccccccce-------------------------
Q 021036 176 ----------------------------------------------HCVPFSLLK------------------------- 184 (318)
Q Consensus 176 ----------------------------------------------~~~~~~~~~------------------------- 184 (318)
|..|...++
T Consensus 287 h~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~ 366 (910)
T KOG1539|consen 287 HYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVIS 366 (910)
T ss_pred ccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhH
Confidence 111111111
Q ss_pred ----------------------------------------------eeeee-----------------------------
Q 021036 185 ----------------------------------------------EVVTV----------------------------- 189 (318)
Q Consensus 185 ----------------------------------------------~~~~~----------------------------- 189 (318)
.+...
T Consensus 367 e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~ 446 (910)
T KOG1539|consen 367 ESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKK 446 (910)
T ss_pred HHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccc
Confidence 00011
Q ss_pred cccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeee---ecccCceeEEEEcCCCCEEEEecCCCcE
Q 021036 190 NTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSY---NAHDQVVTGLAWAFDGCCLYSCSQDNFV 266 (318)
Q Consensus 190 ~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~l~s~~~d~~v 266 (318)
....+.+++.+ +.|++.+.|...|.|-+| +++++. ...++ ..|..+|++++.+.-++.+++++.+|-+
T Consensus 447 ~~~~~~av~vs-----~CGNF~~IG~S~G~Id~f--NmQSGi--~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gil 517 (910)
T KOG1539|consen 447 DDINATAVCVS-----FCGNFVFIGYSKGTIDRF--NMQSGI--HRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGIL 517 (910)
T ss_pred cCcceEEEEEe-----ccCceEEEeccCCeEEEE--EcccCe--eecccccCccccCceeEEEecCCCceEEEccCcceE
Confidence 12456677777 889999999999999999 666765 44455 4799999999999889999999999999
Q ss_pred EEEEecCCceee-eec---------CCCCCCcc-cc----------------ccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 267 RSWIFHGNSLSQ-VSI---------PTNTPGLQ-SC----------------TDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 267 ~iwd~~~~~~~~-~~~---------~~~~~~~~-~~----------------~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
++||..+..+.. +.. +.....++ .. ..+.+|++.|++++|||||++|+++.
T Consensus 518 kfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisas 595 (910)
T KOG1539|consen 518 KFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISAS 595 (910)
T ss_pred EEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEee
Confidence 999998765321 111 11111111 11 23458999999999999999999863
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-18 Score=142.91 Aligned_cols=235 Identities=15% Similarity=0.147 Sum_probs=170.3
Q ss_pred CcCCCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEE
Q 021036 10 NKMKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAV 89 (318)
Q Consensus 10 ~~~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~ 89 (318)
..+-+.+...+++++..+....||+++.+..+.-...+ +.. ..+....+|+++++|+.
T Consensus 263 a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g--~e~--------------------~~~e~FeVShd~~fia~ 320 (514)
T KOG2055|consen 263 AEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYG--VEE--------------------KSMERFEVSHDSNFIAI 320 (514)
T ss_pred eeecCCCceEEEecccceEEEEeeccccccccccCCCC--ccc--------------------chhheeEecCCCCeEEE
Confidence 34445455578999999999999999876544322211 111 01122234444599999
Q ss_pred ecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcce
Q 021036 90 GGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQEL 169 (318)
Q Consensus 90 g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 169 (318)
.+..|.|.+-...+++ .+.+++ -.+.|..++| +.+++.|++++.+|.|.+||++...+
T Consensus 321 ~G~~G~I~lLhakT~e--------------li~s~K-ieG~v~~~~f-------sSdsk~l~~~~~~GeV~v~nl~~~~~ 378 (514)
T KOG2055|consen 321 AGNNGHIHLLHAKTKE--------------LITSFK-IEGVVSDFTF-------SSDSKELLASGGTGEVYVWNLRQNSC 378 (514)
T ss_pred cccCceEEeehhhhhh--------------hhheee-eccEEeeEEE-------ecCCcEEEEEcCCceEEEEecCCcce
Confidence 9999999999999865 344454 3578999999 78899999999999999999999988
Q ss_pred eeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeecc--CCCeeeEeeeeecccCceeE
Q 021036 170 QKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDI--SCNKFDKVGSYNAHDQVVTG 247 (318)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~--~~~~~~~~~~~~~h~~~v~~ 247 (318)
++.+..... -.-++++.+ +++.+||+|+..|.|.|||.+. ....++++..+..-...|++
T Consensus 379 ~~rf~D~G~-------------v~gts~~~S-----~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Its 440 (514)
T KOG2055|consen 379 LHRFVDDGS-------------VHGTSLCIS-----LNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITS 440 (514)
T ss_pred EEEEeecCc-------------cceeeeeec-----CCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeee
Confidence 887764432 123567777 8999999999999999996432 23345577777777889999
Q ss_pred EEEcCCCCEEEEec--CCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 248 LAWAFDGCCLYSCS--QDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 248 ~~~~~~~~~l~s~~--~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
++|+++++.||.+| .+..+++--+.+.....-....+. .-+.|++|+|+|.|-+||.|.
T Consensus 441 l~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~-----------~vg~vtc~aFSP~sG~lAvGN 501 (514)
T KOG2055|consen 441 LQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNT-----------KVGHVTCMAFSPNSGYLAVGN 501 (514)
T ss_pred eeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCC-----------cccceEEEEecCCCceEEeec
Confidence 99999999887766 456788887766444432222111 235789999999999999884
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.4e-19 Score=148.34 Aligned_cols=223 Identities=22% Similarity=0.245 Sum_probs=160.5
Q ss_pred ccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcE
Q 021036 17 THPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKV 96 (318)
Q Consensus 17 ~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i 96 (318)
...+++++.|+++.+|+++.... +.. ...-|.-.+.+|.+||.|+++...+..+++|+-||+|
T Consensus 306 ep~lit~sed~~lk~WnLqk~~~----------s~~-------~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 306 EPVLITASEDGTLKLWNLQKAKK----------SAE-------KDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred CCeEEEeccccchhhhhhcccCC----------ccc-------cceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 34479999999999999944110 111 2233444678899999999999999999999999999
Q ss_pred EEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcce--eeeec
Q 021036 97 SLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQEL--QKSAE 174 (318)
Q Consensus 97 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~--~~~~~ 174 (318)
+.|++.. ..-+.+...+ ......+.||.+.|+.+++ +...+.|++++.||++++|+...... .....
T Consensus 369 ~~w~~p~-n~dp~ds~dp---~vl~~~l~Ghtdavw~l~~-------s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~ 437 (577)
T KOG0642|consen 369 RCWNLPP-NQDPDDSYDP---SVLSGTLLGHTDAVWLLAL-------SSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPK 437 (577)
T ss_pred eeeccCC-CCCcccccCc---chhccceeccccceeeeee-------cccccceeeecCCceEEeeccCCcCccccCCcc
Confidence 9997762 1111000110 2344568899999999999 77778899999999999999876554 11111
Q ss_pred ccccccccce--------------------------e--eee----e---cccceeEEEEeeccCCCCceEEEEEeCCCc
Q 021036 175 AHCVPFSLLK--------------------------E--VVT----V---NTVPISVLSLILPVQSPRLMLLAVGKGSGS 219 (318)
Q Consensus 175 ~~~~~~~~~~--------------------------~--~~~----~---~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~ 219 (318)
.+..|..+.. . +.. . ....+.-+.+. |+..+.+++..|+.
T Consensus 438 e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~-----~~~~~~~~~hed~~ 512 (577)
T KOG0642|consen 438 EHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSH-----PTADITFTAHEDRS 512 (577)
T ss_pred ccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEec-----CCCCeeEecccCCc
Confidence 1222221111 0 000 0 01234555566 88899999999999
Q ss_pred EEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCce
Q 021036 220 FDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSL 276 (318)
Q Consensus 220 i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 276 (318)
|+++ |..+++ ++.....|...++++++.|+|.+|++++.|+.+++|.+....+
T Consensus 513 Ir~~--dn~~~~--~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~ 565 (577)
T KOG0642|consen 513 IRFF--DNKTGK--ILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTC 565 (577)
T ss_pred eecc--cccccc--cchheeeccceecceeecCCCceEEeecCCceeehhhccchhe
Confidence 9999 666666 7888889999999999999999999999999999999865443
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3e-18 Score=147.10 Aligned_cols=244 Identities=19% Similarity=0.220 Sum_probs=173.0
Q ss_pred cceEEeeCCCceeEeecCC--CCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCc
Q 021036 18 HPTVAASKSKGNSITKIPS--NCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGK 95 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~ 95 (318)
-.++++|.|+++.+|.-.+ |-.+........+... ..=....|+|++ +.+++-+.-|-
T Consensus 280 ~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a--~GF~g~lw~~n~------------------~~ii~~g~~Gg 339 (764)
T KOG1063|consen 280 LDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSA--GGFWGGLWSPNS------------------NVIIAHGRTGG 339 (764)
T ss_pred hhheecccCcceEEEecCCccceEEEEEEeecccccc--cceeeEEEcCCC------------------CEEEEecccCc
Confidence 4689999999999996554 4444444443332111 111236788887 99999999999
Q ss_pred EEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcc-eeeee-
Q 021036 96 VSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQE-LQKSA- 173 (318)
Q Consensus 96 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~- 173 (318)
.++|..++... ..+...+.+|.+.|.+++| .|.|++|++.+.|.+-|++---..+ .-+.+
T Consensus 340 ~hlWkt~d~~~-----------w~~~~~iSGH~~~V~dv~W-------~psGeflLsvs~DQTTRlFa~wg~q~~wHEia 401 (764)
T KOG1063|consen 340 FHLWKTKDKTF-----------WTQEPVISGHVDGVKDVDW-------DPSGEFLLSVSLDQTTRLFARWGRQQEWHEIA 401 (764)
T ss_pred EEEEeccCccc-----------eeeccccccccccceeeee-------cCCCCEEEEeccccceeeecccccccceeeec
Confidence 99999443221 2344557899999999999 8999999999999999988543111 00000
Q ss_pred --ccccc----------------------------ccccce---------------------------------------
Q 021036 174 --EAHCV----------------------------PFSLLK--------------------------------------- 184 (318)
Q Consensus 174 --~~~~~----------------------------~~~~~~--------------------------------------- 184 (318)
..|.. |....+
T Consensus 402 RPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~ 481 (764)
T KOG1063|consen 402 RPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNT 481 (764)
T ss_pred ccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccccc
Confidence 00000 000000
Q ss_pred -------------------------------------eeeeecccceeEEEEeeccCCCCceEEEEEeCCC-----cEEE
Q 021036 185 -------------------------------------EVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSG-----SFDL 222 (318)
Q Consensus 185 -------------------------------------~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg-----~i~v 222 (318)
+...+|...|++++.+ |+++++|+++... .|++
T Consensus 482 G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s-----~~gnliASaCKS~~~ehAvI~l 556 (764)
T KOG1063|consen 482 GGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAIS-----PTGNLIASACKSSLKEHAVIRL 556 (764)
T ss_pred ccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEec-----CCCCEEeehhhhCCccceEEEE
Confidence 2345789999999999 9999999998554 4889
Q ss_pred eeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeee
Q 021036 223 WKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCL 302 (318)
Q Consensus 223 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 302 (318)
| + +..+..++.+.+|.-.|+.++|||||++|++.+.|+++.+|.........+.+ .....|+--|.
T Consensus 557 w--~--t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~f----------a~~k~HtRIIW 622 (764)
T KOG1063|consen 557 W--N--TANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRF----------ACLKAHTRIIW 622 (764)
T ss_pred E--e--ccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhh----------ccccccceEEE
Confidence 8 4 33444677899999999999999999999999999999999885543332221 12445888999
Q ss_pred EEEEcCCCcEEEEEeC
Q 021036 303 GMAVSPGNLVVAMVQI 318 (318)
Q Consensus 303 ~v~~sp~~~~l~~~~~ 318 (318)
++.|+|++.++||+.+
T Consensus 623 dcsW~pde~~FaTaSR 638 (764)
T KOG1063|consen 623 DCSWSPDEKYFATASR 638 (764)
T ss_pred EcccCcccceeEEecC
Confidence 9999999999999853
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-18 Score=142.30 Aligned_cols=240 Identities=14% Similarity=0.084 Sum_probs=160.2
Q ss_pred CcCCCCCc-cceEEeeCCCceeEeecCCCCC-CCceecchhccccccccceeeeecccccCCCCcccccccCCCCC-ccE
Q 021036 10 NKMKDSNT-HPTVAASKSKGNSITKIPSNCC-LPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNW-FSI 86 (318)
Q Consensus 10 ~~~~~~~~-~~~~t~s~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~-~~~ 86 (318)
.++-+... ..+++|..-|+|-+||+.+.+. ...+ +.+. .|..+|.++.|+|- ...
T Consensus 192 l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v----------------~~f~------~hs~~Vs~l~F~P~n~s~ 249 (498)
T KOG4328|consen 192 LAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV----------------YLFT------PHSGPVSGLKFSPANTSQ 249 (498)
T ss_pred EEecccCcceEEEEccCCCcEEEEecCCCCCccCce----------------EEec------cCCccccceEecCCChhh
Confidence 33334444 5678899999999999963221 1111 1122 23355555555553 578
Q ss_pred EEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCC
Q 021036 87 LAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYI 166 (318)
Q Consensus 87 l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 166 (318)
+++.+.||+|++-|++... .+.+..+......+.++.| +.+...++.+..=|...+||.+.
T Consensus 250 i~ssSyDGtiR~~D~~~~i------------~e~v~s~~~d~~~fs~~d~-------~~e~~~vl~~~~~G~f~~iD~R~ 310 (498)
T KOG4328|consen 250 IYSSSYDGTIRLQDFEGNI------------SEEVLSLDTDNIWFSSLDF-------SAESRSVLFGDNVGNFNVIDLRT 310 (498)
T ss_pred eeeeccCceeeeeeecchh------------hHHHhhcCccceeeeeccc-------cCCCccEEEeecccceEEEEeec
Confidence 9999999999999998754 2233333334556777888 66666677777767999999997
Q ss_pred cce-eeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCce
Q 021036 167 QEL-QKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVV 245 (318)
Q Consensus 167 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v 245 (318)
+.. ...+..|. ..|+.++++ |-...+||+++.|++.+|||+..-..+..++.....|...|
T Consensus 311 ~~s~~~~~~lh~--------------kKI~sv~~N----P~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV 372 (498)
T KOG4328|consen 311 DGSEYENLRLHK--------------KKITSVALN----PVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSV 372 (498)
T ss_pred CCccchhhhhhh--------------cccceeecC----CCCchheeecccCcceeeeehhhhcCCCCcceeccccccee
Confidence 643 44444443 389999999 34568999999999999995443333332333445699999
Q ss_pred eEEEEcCCCCEEEEecCCCcEEEEEec----CCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 246 TGLAWAFDGCCLYSCSQDNFVRSWIFH----GNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 246 ~~~~~~~~~~~l~s~~~d~~v~iwd~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
.++.|||.+-.|+|.+.|..|+|||.. .........|.. +...|. .....+|.|+..+|++|+
T Consensus 373 ~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~--------~t~Rwl-T~fKA~W~P~~~li~vg~ 439 (498)
T KOG4328|consen 373 NSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNN--------RTGRWL-TPFKAAWDPDYNLIVVGR 439 (498)
T ss_pred eeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccC--------cccccc-cchhheeCCCccEEEEec
Confidence 999999987779999999999999984 222222222221 111122 234678999999998875
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.4e-18 Score=135.96 Aligned_cols=203 Identities=17% Similarity=0.188 Sum_probs=148.3
Q ss_pred CcCCCCCccceEEeeCCCceeEeecCCCCCCCceecc---hhccccccccceeeeecccccCCCCcccccccCCCCCccE
Q 021036 10 NKMKDSNTHPTVAASKSKGNSITKIPSNCCLPLITAD---QYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSI 86 (318)
Q Consensus 10 ~~~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~ 86 (318)
.++-+.|.+.+++||.|.+|.||+++.+-........ -.+|...+ ..++|+|.. .+.
T Consensus 87 i~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrV---g~V~wHPtA-----------------~NV 146 (472)
T KOG0303|consen 87 IDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRV---GLVQWHPTA-----------------PNV 146 (472)
T ss_pred cccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeE---EEEeecccc-----------------hhh
Confidence 4567788899999999999999999986554443321 22355543 349999987 589
Q ss_pred EEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCC
Q 021036 87 LAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYI 166 (318)
Q Consensus 87 l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 166 (318)
|++++.|.+|.||++.+++. +.++. |.+.|++++| +.+|.+|+|.+.|..|+|||.++
T Consensus 147 Llsag~Dn~v~iWnv~tgea--------------li~l~-hpd~i~S~sf-------n~dGs~l~TtckDKkvRv~dpr~ 204 (472)
T KOG0303|consen 147 LLSAGSDNTVSIWNVGTGEA--------------LITLD-HPDMVYSMSF-------NRDGSLLCTTCKDKKVRVIDPRR 204 (472)
T ss_pred HhhccCCceEEEEeccCCce--------------eeecC-CCCeEEEEEe-------ccCCceeeeecccceeEEEcCCC
Confidence 99999999999999999763 33455 9999999999 99999999999999999999999
Q ss_pred cceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe---CCCcEEEeeeccCCC-eeeEeeeeeccc
Q 021036 167 QELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK---GSGSFDLWKCDISCN-KFDKVGSYNAHD 242 (318)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~---~dg~i~vw~~~~~~~-~~~~~~~~~~h~ 242 (318)
++.+..-..|... .-....|- .+|.++-+|- .+..+.+|| ...- +.....++. ..
T Consensus 205 ~~~v~e~~~heG~-------------k~~Raifl-----~~g~i~tTGfsr~seRq~aLwd--p~nl~eP~~~~elD-tS 263 (472)
T KOG0303|consen 205 GTVVSEGVAHEGA-------------KPARAIFL-----ASGKIFTTGFSRMSERQIALWD--PNNLEEPIALQELD-TS 263 (472)
T ss_pred CcEeeecccccCC-------------CcceeEEe-----ccCceeeeccccccccceeccC--cccccCcceeEEec-cC
Confidence 9988876665531 22333454 6788555553 577899995 3322 211233333 33
Q ss_pred CceeEEEEcCCCCEE-EEecCCCcEEEEEecCCc
Q 021036 243 QVVTGLAWAFDGCCL-YSCSQDNFVRSWIFHGNS 275 (318)
Q Consensus 243 ~~v~~~~~~~~~~~l-~s~~~d~~v~iwd~~~~~ 275 (318)
..|.---|+++..++ ++|-.|+.||.|.+....
T Consensus 264 nGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 264 NGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred CceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 445545578887755 566789999999998765
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.3e-19 Score=160.84 Aligned_cols=218 Identities=19% Similarity=0.238 Sum_probs=155.7
Q ss_pred ceEEeeCCCceeEeecCCC---CCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCC-ccEEEEecCCC
Q 021036 19 PTVAASKSKGNSITKIPSN---CCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNW-FSILAVGGRSG 94 (318)
Q Consensus 19 ~~~t~s~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~-~~~l~~g~~dg 94 (318)
.++.|..||.|.+||...- .....+ .+...|.++|..++|++. +++||+|+.||
T Consensus 82 lIaGG~edG~I~ly~p~~~~~~~~~~~l----------------------a~~~~h~G~V~gLDfN~~q~nlLASGa~~g 139 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASIIANASEEVL----------------------ATKSKHTGPVLGLDFNPFQGNLLASGADDG 139 (1049)
T ss_pred eeeccccCCceEEecchhhccCcchHHH----------------------hhhcccCCceeeeeccccCCceeeccCCCC
Confidence 4788889999999987652 111111 134456667777777775 56999999999
Q ss_pred cEEEEEccCCccccccccccCCceeEEee-eccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeee
Q 021036 95 KVSLWRICVPKCYSVEDCKVPTTAVLIGL-FQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSA 173 (318)
Q Consensus 95 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 173 (318)
.|.|||++..+.. ... -..-.+.|.+++| +......|++++.+|++.|||++..+.+-.+
T Consensus 140 eI~iWDlnn~~tP-------------~~~~~~~~~~eI~~lsW------NrkvqhILAS~s~sg~~~iWDlr~~~pii~l 200 (1049)
T KOG0307|consen 140 EILIWDLNKPETP-------------FTPGSQAPPSEIKCLSW------NRKVSHILASGSPSGRAVIWDLRKKKPIIKL 200 (1049)
T ss_pred cEEEeccCCcCCC-------------CCCCCCCCcccceEecc------chhhhHHhhccCCCCCceeccccCCCccccc
Confidence 9999999874421 100 1224578999999 4556678999999999999999987665544
Q ss_pred cccccccccceeeeeecccceeEEEEeeccCCCC-ceEEEEEeCCC---cEEEeeeccCCCeeeEeeeeecccCceeEEE
Q 021036 174 EAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPR-LMLLAVGKGSG---SFDLWKCDISCNKFDKVGSYNAHDQVVTGLA 249 (318)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~-~~~l~~~~~dg---~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~ 249 (318)
..+.. ...++.+.|+ |+ ...+++++.|. .|.+||++..+. ++..+++|...|.++.
T Consensus 201 s~~~~------------~~~~S~l~Wh-----P~~aTql~~As~dd~~PviqlWDlR~ass---P~k~~~~H~~Gilsls 260 (1049)
T KOG0307|consen 201 SDTPG------------RMHCSVLAWH-----PDHATQLLVASGDDSAPVIQLWDLRFASS---PLKILEGHQRGILSLS 260 (1049)
T ss_pred ccCCC------------ccceeeeeeC-----CCCceeeeeecCCCCCceeEeecccccCC---chhhhcccccceeeec
Confidence 43321 1247789999 55 45666666443 589995433332 7778899999999999
Q ss_pred EcCCC-CEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCc
Q 021036 250 WAFDG-CCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNL 311 (318)
Q Consensus 250 ~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 311 (318)
|++.+ ++|++++.|+.|.+|+.++++...-... ....+..+.|+|...
T Consensus 261 Wc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~--------------~~nW~fdv~w~pr~P 309 (1049)
T KOG0307|consen 261 WCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA--------------QGNWCFDVQWCPRNP 309 (1049)
T ss_pred cCCCCchhhhcccCCCCeeEecCCCceEeeecCC--------------CCcceeeeeecCCCc
Confidence 99965 7999999999999999999776532211 123788999998544
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-17 Score=137.29 Aligned_cols=228 Identities=16% Similarity=0.138 Sum_probs=154.7
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCc
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGK 95 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~ 95 (318)
+....+||.++|.+.||+..+.+..+... .|.+. |.++..-.+|.+ ++|++|..
T Consensus 256 engdviTgDS~G~i~Iw~~~~~~~~k~~~----aH~gg---------------------v~~L~~lr~Gtl-lSGgKDRk 309 (626)
T KOG2106|consen 256 ENGDVITGDSGGNILIWSKGTNRISKQVH----AHDGG---------------------VFSLCMLRDGTL-LSGGKDRK 309 (626)
T ss_pred CCCCEEeecCCceEEEEeCCCceEEeEee----ecCCc---------------------eEEEEEecCccE-eecCccce
Confidence 34557999999999999886554333322 23333 333444444455 45999999
Q ss_pred EEEEEccCCcccccc----cc--------cc------CC--------ceeEEeeeccccccEEEEEeeeecCCCCCCCcE
Q 021036 96 VSLWRICVPKCYSVE----DC--------KV------PT--------TAVLIGLFQAHNSWITSISLAVLSSDSSNPQVL 149 (318)
Q Consensus 96 i~iw~~~~~~~~~~~----~~--------~~------~~--------~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~ 149 (318)
|..||-.-.+.-.++ .+ .. .. .........+|.+..+.++- .+..++
T Consensus 310 i~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~-------hps~~q 382 (626)
T KOG2106|consen 310 IILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLAT-------HPSKNQ 382 (626)
T ss_pred EEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEc-------CCChhh
Confidence 999994321111000 00 00 00 00111234578889999999 777889
Q ss_pred EEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCC
Q 021036 150 LVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISC 229 (318)
Q Consensus 150 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~ 229 (318)
++|++.|+.+++|+ ..+...+.... .+..++.|+ |.| .+|.|...|...+. |.++
T Consensus 383 ~~T~gqdk~v~lW~--~~k~~wt~~~~---------------d~~~~~~fh-----psg-~va~Gt~~G~w~V~--d~e~ 437 (626)
T KOG2106|consen 383 LLTCGQDKHVRLWN--DHKLEWTKIIE---------------DPAECADFH-----PSG-VVAVGTATGRWFVL--DTET 437 (626)
T ss_pred eeeccCcceEEEcc--CCceeEEEEec---------------CceeEeecc-----Ccc-eEEEeeccceEEEE--eccc
Confidence 99999999999999 44555443322 277899999 888 99999999998887 5555
Q ss_pred CeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCce-eeeecCCCCCCccccccCCCcceeeeEEEEcC
Q 021036 230 NKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSL-SQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSP 308 (318)
Q Consensus 230 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp 308 (318)
.. .+. +.....+++++.|+|+|.+||.|+.|+.|+||-+..+.. ......- +.++|+.+.|++
T Consensus 438 ~~--lv~-~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~-------------~gs~ithLDwS~ 501 (626)
T KOG2106|consen 438 QD--LVT-IHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKC-------------SGSPITHLDWSS 501 (626)
T ss_pred ce--eEE-EEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeee-------------cCceeEEeeecC
Confidence 44 333 333378999999999999999999999999999865332 2211111 114899999999
Q ss_pred CCcEEEEEe
Q 021036 309 GNLVVAMVQ 317 (318)
Q Consensus 309 ~~~~l~~~~ 317 (318)
|+++|.+-.
T Consensus 502 Ds~~~~~~S 510 (626)
T KOG2106|consen 502 DSQFLVSNS 510 (626)
T ss_pred CCceEEecc
Confidence 999998754
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.6e-18 Score=140.92 Aligned_cols=212 Identities=12% Similarity=0.124 Sum_probs=152.9
Q ss_pred ceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEE
Q 021036 19 PTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSL 98 (318)
Q Consensus 19 ~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i 98 (318)
.+++|+..+.|+|||+....+...+.. |.+. ++++.++-.. .+||+++..|.|.|
T Consensus 93 y~~sgG~~~~Vkiwdl~~kl~hr~lkd----h~st---vt~v~YN~~D------------------eyiAsvs~gGdiii 147 (673)
T KOG4378|consen 93 YEISGGQSGCVKIWDLRAKLIHRFLKD----HQST---VTYVDYNNTD------------------EYIASVSDGGDIII 147 (673)
T ss_pred eeeccCcCceeeehhhHHHHHhhhccC----Ccce---eEEEEecCCc------------------ceeEEeccCCcEEE
Confidence 368899999999999985544333222 3332 4456666555 89999999999999
Q ss_pred EEccCCccccccccccCCceeEEeeeccc-cccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccc
Q 021036 99 WRICVPKCYSVEDCKVPTTAVLIGLFQAH-NSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHC 177 (318)
Q Consensus 99 w~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 177 (318)
..+.++.. ...|... ...|.-+.|+| ....+|.+++.+|.|.+||+........+.
T Consensus 148 h~~~t~~~--------------tt~f~~~sgqsvRll~ys~------skr~lL~~asd~G~VtlwDv~g~sp~~~~~--- 204 (673)
T KOG4378|consen 148 HGTKTKQK--------------TTTFTIDSGQSVRLLRYSP------SKRFLLSIASDKGAVTLWDVQGMSPIFHAS--- 204 (673)
T ss_pred EecccCcc--------------ccceecCCCCeEEEeeccc------ccceeeEeeccCCeEEEEeccCCCcccchh---
Confidence 99988542 2233322 34567899932 233468888999999999998776655432
Q ss_pred cccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEE
Q 021036 178 VPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCL 257 (318)
Q Consensus 178 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 257 (318)
..|.+|...++|+ |.+..+|++.+.|..|.+|| .+..+ ....+. ...+.+.++|.++|.+|
T Consensus 205 ----------~~HsAP~~gicfs----psne~l~vsVG~Dkki~~yD--~~s~~--s~~~l~-y~~Plstvaf~~~G~~L 265 (673)
T KOG4378|consen 205 ----------EAHSAPCRGICFS----PSNEALLVSVGYDKKINIYD--IRSQA--STDRLT-YSHPLSTVAFSECGTYL 265 (673)
T ss_pred ----------hhccCCcCcceec----CCccceEEEecccceEEEee--ccccc--ccceee-ecCCcceeeecCCceEE
Confidence 4567789999999 45678899999999999995 44433 233332 45688999999999999
Q ss_pred EEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCC
Q 021036 258 YSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGN 310 (318)
Q Consensus 258 ~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~ 310 (318)
+.|...|.|..||++..+..-.. ...|...|++++|-|..
T Consensus 266 ~aG~s~G~~i~YD~R~~k~Pv~v-------------~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 266 CAGNSKGELIAYDMRSTKAPVAV-------------RSAHDASVTRVAFQPSP 305 (673)
T ss_pred EeecCCceEEEEecccCCCCceE-------------eeecccceeEEEeeecc
Confidence 99999999999999875433211 22355689999998765
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-17 Score=137.00 Aligned_cols=221 Identities=13% Similarity=0.149 Sum_probs=159.7
Q ss_pred eEEeeCCCceeEeecCC--CCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCcc-EEEEecCCCcE
Q 021036 20 TVAASKSKGNSITKIPS--NCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFS-ILAVGGRSGKV 96 (318)
Q Consensus 20 ~~t~s~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~-~l~~g~~dg~i 96 (318)
+++++.|++++|+.+.. +..++.+.... .|+.++.|.++|. .+++++.....
T Consensus 228 llvaG~d~~lrifqvDGk~N~~lqS~~l~~-------------------------fPi~~a~f~p~G~~~i~~s~rrky~ 282 (514)
T KOG2055|consen 228 LLVAGLDGTLRIFQVDGKVNPKLQSIHLEK-------------------------FPIQKAEFAPNGHSVIFTSGRRKYL 282 (514)
T ss_pred EEEecCCCcEEEEEecCccChhheeeeecc-------------------------CccceeeecCCCceEEEecccceEE
Confidence 68999999999997654 44444444433 2333334444446 89999999999
Q ss_pred EEEEccCCccccccccccCCceeEEeeecccc-ccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecc
Q 021036 97 SLWRICVPKCYSVEDCKVPTTAVLIGLFQAHN-SWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEA 175 (318)
Q Consensus 97 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 175 (318)
+.||+.+.+. ..+..+.++. ..+..... ++++++|+..+..|.|.+.-..+++.+..++.
T Consensus 283 ysyDle~ak~------------~k~~~~~g~e~~~~e~FeV-------Shd~~fia~~G~~G~I~lLhakT~eli~s~Ki 343 (514)
T KOG2055|consen 283 YSYDLETAKV------------TKLKPPYGVEEKSMERFEV-------SHDSNFIAIAGNNGHIHLLHAKTKELITSFKI 343 (514)
T ss_pred EEeecccccc------------ccccCCCCcccchhheeEe-------cCCCCeEEEcccCceEEeehhhhhhhhheeee
Confidence 9999998663 3344444443 34666777 88999999999999999999999988888775
Q ss_pred cccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccC-ceeEEEEcCCC
Q 021036 176 HCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQ-VVTGLAWAFDG 254 (318)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~ 254 (318)
.. .|..++|+ .+++.|++++.+|.|++|| ++... .++++....+ .-++++.+++|
T Consensus 344 eG---------------~v~~~~fs-----Sdsk~l~~~~~~GeV~v~n--l~~~~--~~~rf~D~G~v~gts~~~S~ng 399 (514)
T KOG2055|consen 344 EG---------------VVSDFTFS-----SDSKELLASGGTGEVYVWN--LRQNS--CLHRFVDDGSVHGTSLCISLNG 399 (514)
T ss_pred cc---------------EEeeEEEe-----cCCcEEEEEcCCceEEEEe--cCCcc--eEEEEeecCccceeeeeecCCC
Confidence 54 78999999 8999999999999999995 44544 5556653221 22567778999
Q ss_pred CEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 255 CCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 255 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
.+||+|+..|.|.|||..+...... ..|- ..+..-...|++++|+||+++||.+
T Consensus 400 ~ylA~GS~~GiVNIYd~~s~~~s~~-PkPi-------k~~dNLtt~Itsl~Fn~d~qiLAia 453 (514)
T KOG2055|consen 400 SYLATGSDSGIVNIYDGNSCFASTN-PKPI-------KTVDNLTTAITSLQFNHDAQILAIA 453 (514)
T ss_pred ceEEeccCcceEEEeccchhhccCC-CCch-------hhhhhhheeeeeeeeCcchhhhhhh
Confidence 9999999999999999765322211 1110 1222344589999999999998865
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-16 Score=132.26 Aligned_cols=216 Identities=12% Similarity=0.082 Sum_probs=142.9
Q ss_pred ceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEE-EEecCCCcEE
Q 021036 19 PTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSIL-AVGGRSGKVS 97 (318)
Q Consensus 19 ~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l-~~g~~dg~i~ 97 (318)
.+++++.|+.+++||+.+++.+..+... .. +..+.|+|++ +.+ ++++.++.|+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~~~~~-----~~---~~~l~~~~dg------------------~~l~~~~~~~~~v~ 56 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRTFPVG-----QR---PRGITLSKDG------------------KLLYVCASDSDTIQ 56 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEEEECC-----CC---CCceEECCCC------------------CEEEEEECCCCeEE
Confidence 3578899999999999988765554321 11 2237788777 655 6778899999
Q ss_pred EEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEE-eCCCcEEEEECCCcceeeeeccc
Q 021036 98 LWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTG-SSDGSVRIWDGYIQELQKSAEAH 176 (318)
Q Consensus 98 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~-~~d~~v~iwd~~~~~~~~~~~~~ 176 (318)
+||..+++ ....+..+.. +..+.| +++++.++++ +.|+.+++||+.+++.+..+...
T Consensus 57 ~~d~~~~~--------------~~~~~~~~~~-~~~~~~-------~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~ 114 (300)
T TIGR03866 57 VIDLATGE--------------VIGTLPSGPD-PELFAL-------HPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG 114 (300)
T ss_pred EEECCCCc--------------EEEeccCCCC-ccEEEE-------CCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC
Confidence 99998754 3344444433 467889 7888766554 56899999999987665544321
Q ss_pred ccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCc-EEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCC
Q 021036 177 CVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGS-FDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGC 255 (318)
Q Consensus 177 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~-i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 255 (318)
..+..++|+ |++.++++++.++. +.+| +..+.+ ...... ....+..++|+|+|+
T Consensus 115 ---------------~~~~~~~~~-----~dg~~l~~~~~~~~~~~~~--d~~~~~--~~~~~~-~~~~~~~~~~s~dg~ 169 (300)
T TIGR03866 115 ---------------VEPEGMAVS-----PDGKIVVNTSETTNMAHFI--DTKTYE--IVDNVL-VDQRPRFAEFTADGK 169 (300)
T ss_pred ---------------CCcceEEEC-----CCCCEEEEEecCCCeEEEE--eCCCCe--EEEEEE-cCCCccEEEECCCCC
Confidence 135678998 99999999887754 5566 555554 222222 233457899999999
Q ss_pred EEE-EecCCCcEEEEEecCCceee-eecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 256 CLY-SCSQDNFVRSWIFHGNSLSQ-VSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 256 ~l~-s~~~d~~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
+|+ ++..++.|++||+.+++... +....... .........++|+|+++++++
T Consensus 170 ~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~--------~~~~~~~~~i~~s~dg~~~~~ 223 (300)
T TIGR03866 170 ELWVSSEIGGTVSVIDVATRKVIKKITFEIPGV--------HPEAVQPVGIKLTKDGKTAFV 223 (300)
T ss_pred EEEEEcCCCCEEEEEEcCcceeeeeeeeccccc--------ccccCCccceEECCCCCEEEE
Confidence 775 44569999999998875432 22211100 000012346889999887543
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-16 Score=132.35 Aligned_cols=211 Identities=13% Similarity=0.078 Sum_probs=140.8
Q ss_pred ceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEE-EecCCCcEE
Q 021036 19 PTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILA-VGGRSGKVS 97 (318)
Q Consensus 19 ~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~-~g~~dg~i~ 97 (318)
..++++.++.+++||..+++....+.. +.. ...+.|+|++ +.++ +++.|+.|+
T Consensus 45 l~~~~~~~~~v~~~d~~~~~~~~~~~~----~~~----~~~~~~~~~g------------------~~l~~~~~~~~~l~ 98 (300)
T TIGR03866 45 LYVCASDSDTIQVIDLATGEVIGTLPS----GPD----PELFALHPNG------------------KILYIANEDDNLVT 98 (300)
T ss_pred EEEEECCCCeEEEEECCCCcEEEeccC----CCC----ccEEEECCCC------------------CEEEEEcCCCCeEE
Confidence 346677899999999988765443322 111 1236777777 6554 456789999
Q ss_pred EEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCC-cEEEEECCCcceeeeeccc
Q 021036 98 LWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDG-SVRIWDGYIQELQKSAEAH 176 (318)
Q Consensus 98 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~-~v~iwd~~~~~~~~~~~~~ 176 (318)
+||+.+.+ .+..+.. ...+.+++| +++++++++++.++ .+.+||..+++........
T Consensus 99 ~~d~~~~~--------------~~~~~~~-~~~~~~~~~-------~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~ 156 (300)
T TIGR03866 99 VIDIETRK--------------VLAEIPV-GVEPEGMAV-------SPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD 156 (300)
T ss_pred EEECCCCe--------------EEeEeeC-CCCcceEEE-------CCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC
Confidence 99998743 3344432 234688999 89999999988775 5677898877654433211
Q ss_pred ccccccceeeeeecccceeEEEEeeccCCCCceEEEEE-eCCCcEEEeeeccCCCeeeEeeeeecc-----c--CceeEE
Q 021036 177 CVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVG-KGSGSFDLWKCDISCNKFDKVGSYNAH-----D--QVVTGL 248 (318)
Q Consensus 177 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~h-----~--~~v~~~ 248 (318)
.....++|+ |++..|+++ ..++.|++| +.++++ .+..+..+ . .....+
T Consensus 157 ---------------~~~~~~~~s-----~dg~~l~~~~~~~~~v~i~--d~~~~~--~~~~~~~~~~~~~~~~~~~~~i 212 (300)
T TIGR03866 157 ---------------QRPRFAEFT-----ADGKELWVSSEIGGTVSVI--DVATRK--VIKKITFEIPGVHPEAVQPVGI 212 (300)
T ss_pred ---------------CCccEEEEC-----CCCCEEEEEcCCCCEEEEE--EcCcce--eeeeeeecccccccccCCccce
Confidence 134678888 899877554 469999999 555554 23333211 1 123568
Q ss_pred EEcCCCCEEEE-ecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 249 AWAFDGCCLYS-CSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 249 ~~~~~~~~l~s-~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
+|+|++++++. .+.++.+.+||+.+++........ ..+.+++|+|+|++|+++
T Consensus 213 ~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~---------------~~~~~~~~~~~g~~l~~~ 266 (300)
T TIGR03866 213 KLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVG---------------QRVWQLAFTPDEKYLLTT 266 (300)
T ss_pred EECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeC---------------CCcceEEECCCCCEEEEE
Confidence 89999997544 455678999999877665432222 257899999999998764
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-17 Score=141.50 Aligned_cols=217 Identities=17% Similarity=0.248 Sum_probs=139.6
Q ss_pred CCCccceEEeeCCCceeEeecCCCCCC-Cceecc-hhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEec
Q 021036 14 DSNTHPTVAASKSKGNSITKIPSNCCL-PLITAD-QYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGG 91 (318)
Q Consensus 14 ~~~~~~~~t~s~d~~i~iwd~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~ 91 (318)
+...|.++.+-+||.|.++|....... +..... -..|.+++.+ +.|-|. ...|++.+
T Consensus 61 ~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifD---l~wapg------------------e~~lVsas 119 (720)
T KOG0321|consen 61 PNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFD---LKWAPG------------------ESLLVSAS 119 (720)
T ss_pred CCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEe---eccCCC------------------ceeEEEcc
Confidence 345678899999999999998764332 111110 1124454333 666663 48899999
Q ss_pred CCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCccee-
Q 021036 92 RSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQ- 170 (318)
Q Consensus 92 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~- 170 (318)
.|.+++.||+++.++. -...+.+|...|.+++|+|+ +...|++|+.||.+.|||++-...-
T Consensus 120 GDsT~r~Wdvk~s~l~------------G~~~~~GH~~SvkS~cf~~~------n~~vF~tGgRDg~illWD~R~n~~d~ 181 (720)
T KOG0321|consen 120 GDSTIRPWDVKTSRLV------------GGRLNLGHTGSVKSECFMPT------NPAVFCTGGRDGEILLWDCRCNGVDA 181 (720)
T ss_pred CCceeeeeeeccceee------------cceeecccccccchhhhccC------CCcceeeccCCCcEEEEEEeccchhh
Confidence 9999999999986532 22347899999999999554 3457999999999999999854311
Q ss_pred -e-----eeccccc---cccccee---eeeecccc----eeEEEEeeccCCCCceEEEEEeC-CCcEEEeeeccCCCee-
Q 021036 171 -K-----SAEAHCV---PFSLLKE---VVTVNTVP----ISVLSLILPVQSPRLMLLAVGKG-SGSFDLWKCDISCNKF- 232 (318)
Q Consensus 171 -~-----~~~~~~~---~~~~~~~---~~~~~~~~----v~~l~~~~~~~~~~~~~l~~~~~-dg~i~vw~~~~~~~~~- 232 (318)
. ....|.. +..+... ...++... |+.+.| .|...||+++. |+.|+|||+......+
T Consensus 182 ~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f------kDe~tlaSaga~D~~iKVWDLRk~~~~~r 255 (720)
T KOG0321|consen 182 LEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF------KDESTLASAGAADSTIKVWDLRKNYTAYR 255 (720)
T ss_pred HHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEE------eccceeeeccCCCcceEEEeecccccccc
Confidence 0 0111111 1111111 11122222 445555 68889999887 9999999654322111
Q ss_pred -eE--eeeeecc---cCceeEEEEcCCCCEEEEecCCCcEEEEEecCCc
Q 021036 233 -DK--VGSYNAH---DQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNS 275 (318)
Q Consensus 233 -~~--~~~~~~h---~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 275 (318)
++ ...+..| .-.+.++..+..|.+|++.+.|+.|++|++.+..
T Consensus 256 ~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s 304 (720)
T KOG0321|consen 256 QEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLS 304 (720)
T ss_pred cCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccC
Confidence 11 1222223 3356778888888988888889999999998643
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.4e-17 Score=129.51 Aligned_cols=241 Identities=12% Similarity=0.083 Sum_probs=151.2
Q ss_pred ccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcE
Q 021036 17 THPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKV 96 (318)
Q Consensus 17 ~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i 96 (318)
...++.|..||.+.|||+.+...-..++ +|..||.++++|++|+.|++++.|..|
T Consensus 35 G~~lAvGc~nG~vvI~D~~T~~iar~ls-------------------------aH~~pi~sl~WS~dgr~LltsS~D~si 89 (405)
T KOG1273|consen 35 GDYLAVGCANGRVVIYDFDTFRIARMLS-------------------------AHVRPITSLCWSRDGRKLLTSSRDWSI 89 (405)
T ss_pred cceeeeeccCCcEEEEEccccchhhhhh-------------------------ccccceeEEEecCCCCEeeeecCCcee
Confidence 3457889999999999998865322332 344444444444444999999999999
Q ss_pred EEEEccCCcccccccc-c-------cC-CceeEEeeeccccccEEEEEe-------eeecC-----------CCCCCCcE
Q 021036 97 SLWRICVPKCYSVEDC-K-------VP-TTAVLIGLFQAHNSWITSISL-------AVLSS-----------DSSNPQVL 149 (318)
Q Consensus 97 ~iw~~~~~~~~~~~~~-~-------~~-~~~~~~~~~~~h~~~v~~~~~-------~p~~~-----------~~~~~~~~ 149 (318)
.+||+..|.++....- . .+ ...+.+..+-... + .-+.| .|... ...+.|++
T Consensus 90 ~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~s-p-~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~y 167 (405)
T KOG1273|consen 90 KLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEES-P-VVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKY 167 (405)
T ss_pred EEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCC-c-EEEEecCCceeeccCCCccccccccccccccCCCCE
Confidence 9999999876532110 0 00 0001111110000 0 00000 01100 01567899
Q ss_pred EEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeec-c-
Q 021036 150 LVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCD-I- 227 (318)
Q Consensus 150 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~-~- 227 (318)
+++|...|.+.++|..+.+++..++... ...|..+.++ ..|+.|++-+.|..|+.|++. +
T Consensus 168 IitGtsKGkllv~~a~t~e~vas~rits-------------~~~IK~I~~s-----~~g~~liiNtsDRvIR~ye~~di~ 229 (405)
T KOG1273|consen 168 IITGTSKGKLLVYDAETLECVASFRITS-------------VQAIKQIIVS-----RKGRFLIINTSDRVIRTYEISDID 229 (405)
T ss_pred EEEecCcceEEEEecchheeeeeeeech-------------heeeeEEEEe-----ccCcEEEEecCCceEEEEehhhhc
Confidence 9999999999999999998887766433 1267888898 899999999999999999643 1
Q ss_pred ---CCCeeeEeeeeec--ccCceeEEEEcCCCCEEEEecCC-CcEEEEEecCCceeeeecCCCCCCccccccCCCcceee
Q 021036 228 ---SCNKFDKVGSYNA--HDQVVTGLAWAFDGCCLYSCSQD-NFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSC 301 (318)
Q Consensus 228 ---~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~~~d-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 301 (318)
+.++.++.++++. ....-.+++|+.+|.|++.++.. -.++||....|.+..+.....+. ..
T Consensus 230 ~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE-------------~l 296 (405)
T KOG1273|consen 230 DEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGE-------------EL 296 (405)
T ss_pred ccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchh-------------he
Confidence 2233333333322 12233578899999998877644 46999999888887665444332 34
Q ss_pred eEEEEcCCCcEEEE
Q 021036 302 LGMAVSPGNLVVAM 315 (318)
Q Consensus 302 ~~v~~sp~~~~l~~ 315 (318)
..|.|+|-...|++
T Consensus 297 ~DV~whp~rp~i~s 310 (405)
T KOG1273|consen 297 LDVNWHPVRPIIAS 310 (405)
T ss_pred eecccccceeeeee
Confidence 55566665444443
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.1e-18 Score=139.24 Aligned_cols=198 Identities=19% Similarity=0.164 Sum_probs=151.4
Q ss_pred CCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccc-cccc--cCCceeEEeee-ccccccEEEEEeeeecCCC
Q 021036 68 LSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSV-EDCK--VPTTAVLIGLF-QAHNSWITSISLAVLSSDS 143 (318)
Q Consensus 68 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~-~~~~--~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~ 143 (318)
+..|..++.++.++++..+.++++.||+|.-|++.++..... ...+ ....+.+.+.- +.|...|.+++.
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~av------- 210 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAV------- 210 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEE-------
Confidence 445778888889999889999999999999999998874321 0000 00001111111 489999999999
Q ss_pred CCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEe
Q 021036 144 SNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLW 223 (318)
Q Consensus 144 ~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw 223 (318)
+++|++|++|+.|..|.||+.++.+.++.+.+|.. .|.+++|- .....+++++.|+.|++|
T Consensus 211 S~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~--------------~V~~L~fr-----~gt~~lys~s~Drsvkvw 271 (479)
T KOG0299|consen 211 SSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRG--------------AVSSLAFR-----KGTSELYSASADRSVKVW 271 (479)
T ss_pred cCCCcEEEecCCCceEEEecCcccchhhccccccc--------------ceeeeeee-----cCccceeeeecCCceEEE
Confidence 99999999999999999999999998888776654 89999998 677889999999999999
Q ss_pred eeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeE
Q 021036 224 KCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLG 303 (318)
Q Consensus 224 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 303 (318)
+++ ... .+.++.+|...|.++.-...++.+.+|+.|+++++|++.......+..+ .+.+-+
T Consensus 272 ~~~--~~s--~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~---------------~~sidc 332 (479)
T KOG0299|consen 272 SID--QLS--YVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGG---------------EGSIDC 332 (479)
T ss_pred ehh--HhH--HHHHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCC---------------CCCeee
Confidence 544 333 5678889999999998888888788888999999999955444333322 235667
Q ss_pred EEEcCCC
Q 021036 304 MAVSPGN 310 (318)
Q Consensus 304 v~~sp~~ 310 (318)
++|-.+.
T Consensus 333 v~~In~~ 339 (479)
T KOG0299|consen 333 VAFINDE 339 (479)
T ss_pred EEEeccc
Confidence 7776554
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.7e-17 Score=126.93 Aligned_cols=197 Identities=17% Similarity=0.224 Sum_probs=134.5
Q ss_pred cccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeC
Q 021036 76 PQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSS 155 (318)
Q Consensus 76 ~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~ 155 (318)
.++.|+..|+.+|+|+.|++|+|||.+.+. .+.......+.|.+.|..+.|. ++.-|+.+++++.
T Consensus 17 hdVs~D~~GRRmAtCSsDq~vkI~d~~~~s----------~~W~~Ts~Wrah~~Si~rV~WA-----hPEfGqvvA~cS~ 81 (361)
T KOG2445|consen 17 HDVSFDFYGRRMATCSSDQTVKIWDSTSDS----------GTWSCTSSWRAHDGSIWRVVWA-----HPEFGQVVATCSY 81 (361)
T ss_pred eeeeecccCceeeeccCCCcEEEEeccCCC----------CceEEeeeEEecCCcEEEEEec-----CccccceEEEEec
Confidence 333333334999999999999999975433 1245667889999999999993 3556899999999
Q ss_pred CCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCC--ceEEEEEeCCCcEEEeeec-c-CCCe
Q 021036 156 DGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPR--LMLLAVGKGSGSFDLWKCD-I-SCNK 231 (318)
Q Consensus 156 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~--~~~l~~~~~dg~i~vw~~~-~-~~~~ 231 (318)
|+++.||.-.. ..++.+...+... .........|+++.|. |. |-.+|+++.||.++||+.- . .-..
T Consensus 82 Drtv~iWEE~~----~~~~~~~~~Wv~~-ttl~DsrssV~DV~Fa-----P~hlGLklA~~~aDG~lRIYEA~dp~nLs~ 151 (361)
T KOG2445|consen 82 DRTVSIWEEQE----KSEEAHGRRWVRR-TTLVDSRSSVTDVKFA-----PKHLGLKLAAASADGILRIYEAPDPMNLSQ 151 (361)
T ss_pred CCceeeeeecc----cccccccceeEEE-EEeecCCcceeEEEec-----chhcceEEEEeccCcEEEEEecCCcccccc
Confidence 99999997531 1122222111111 1223345689999998 54 7789999999999999621 1 1112
Q ss_pred eeEeeeee-------cccCceeEEEEcCC---CCEEEEecCC-----CcEEEEEecCC--ceeeeecCCCCCCccccccC
Q 021036 232 FDKVGSYN-------AHDQVVTGLAWAFD---GCCLYSCSQD-----NFVRSWIFHGN--SLSQVSIPTNTPGLQSCTDL 294 (318)
Q Consensus 232 ~~~~~~~~-------~h~~~v~~~~~~~~---~~~l~s~~~d-----~~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~ 294 (318)
+....+++ .+..+..|+.|+|. ..+||.|+.+ +.++||....+ +...+ ..+
T Consensus 152 W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kv------------a~L 219 (361)
T KOG2445|consen 152 WTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKV------------AEL 219 (361)
T ss_pred chhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeee------------hhc
Confidence 22333333 46678889999984 4588888766 57888877543 33332 245
Q ss_pred CCcceeeeEEEEcCC
Q 021036 295 PDAFVSCLGMAVSPG 309 (318)
Q Consensus 295 ~~h~~~v~~v~~sp~ 309 (318)
.+|..+|+.++|.|+
T Consensus 220 ~d~~dpI~di~wAPn 234 (361)
T KOG2445|consen 220 PDHTDPIRDISWAPN 234 (361)
T ss_pred CCCCCcceeeeeccc
Confidence 568899999999994
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.7e-17 Score=126.94 Aligned_cols=231 Identities=19% Similarity=0.194 Sum_probs=150.6
Q ss_pred CceeEeecCCCCCCCce-ecchhc--cccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEEEEccC
Q 021036 27 KGNSITKIPSNCCLPLI-TADQYA--SRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICV 103 (318)
Q Consensus 27 ~~i~iwd~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~ 103 (318)
..+.||.++........ ...... ....+..+.|+.|.|.+ ..+++-. |..|.+|+++.
T Consensus 93 ~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns------------------~klasm~-dn~i~l~~l~e 153 (370)
T KOG1007|consen 93 TGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS------------------DKLASMD-DNNIVLWSLDE 153 (370)
T ss_pred eeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC------------------CeeEEec-cCceEEEEccc
Confidence 35678988764332110 011111 11223345678888876 7777665 88999999987
Q ss_pred CccccccccccCCceeEEee-eccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeeccccccccc
Q 021036 104 PKCYSVEDCKVPTTAVLIGL-FQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSL 182 (318)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~ 182 (318)
+.... ...... -.++....++-+|+|+ .++..+++. .|+++..||+++.++...+.
T Consensus 154 ss~~v---------aev~ss~s~e~~~~ftsg~WspH-----Hdgnqv~tt-~d~tl~~~D~RT~~~~~sI~-------- 210 (370)
T KOG1007|consen 154 SSKIV---------AEVLSSESAEMRHSFTSGAWSPH-----HDGNQVATT-SDSTLQFWDLRTMKKNNSIE-------- 210 (370)
T ss_pred Ccchh---------eeecccccccccceecccccCCC-----CccceEEEe-CCCcEEEEEccchhhhcchh--------
Confidence 64311 011111 1235667788899443 355566655 58999999999887666554
Q ss_pred ceeeeeecccceeEEEEeeccCCCC-ceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCC-CCEEEEe
Q 021036 183 LKEVVTVNTVPISVLSLILPVQSPR-LMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFD-GCCLYSC 260 (318)
Q Consensus 183 ~~~~~~~~~~~v~~l~~~~~~~~~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~ 260 (318)
.+|...|..+.|+ |+ ..+|++|+.||.|++| |.+..+. ++.++.+|...|+++.|+|. .++|++|
T Consensus 211 -----dAHgq~vrdlDfN-----pnkq~~lvt~gDdgyvriW--D~R~tk~-pv~el~~HsHWvW~VRfn~~hdqLiLs~ 277 (370)
T KOG1007|consen 211 -----DAHGQRVRDLDFN-----PNKQHILVTCGDDGYVRIW--DTRKTKF-PVQELPGHSHWVWAVRFNPEHDQLILSG 277 (370)
T ss_pred -----hhhcceeeeccCC-----CCceEEEEEcCCCccEEEE--eccCCCc-cccccCCCceEEEEEEecCccceEEEec
Confidence 4566678899998 55 5688999999999999 5555443 88999999999999999996 4588999
Q ss_pred cCCCcEEEEEecCCc-eeeeecCCC------------CCCcc-c-cccCCCcceeeeEEEEcCCCcE
Q 021036 261 SQDNFVRSWIFHGNS-LSQVSIPTN------------TPGLQ-S-CTDLPDAFVSCLGMAVSPGNLV 312 (318)
Q Consensus 261 ~~d~~v~iwd~~~~~-~~~~~~~~~------------~~~~~-~-~~~~~~h~~~v~~v~~sp~~~~ 312 (318)
+.|..|.+|....-. ..++..... .+.|. | -.+...|...|++++|+.-..+
T Consensus 278 ~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPW 344 (370)
T KOG1007|consen 278 GSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPW 344 (370)
T ss_pred CCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCe
Confidence 999999999875411 111111100 01111 1 1245689999999999974333
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.7e-18 Score=136.63 Aligned_cols=189 Identities=19% Similarity=0.120 Sum_probs=135.4
Q ss_pred cccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeC
Q 021036 76 PQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSS 155 (318)
Q Consensus 76 ~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~ 155 (318)
..++++.+|..|++|+.||.+|||+.... ..+.....|...|.++.| +++|++|++-+.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~--------------~t~l~e~~~~~eV~DL~F-------S~dgk~lasig~ 206 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM--------------LTILEEIAHHAEVKDLDF-------SPDGKFLASIGA 206 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc--------------hhhhhhHhhcCcccccee-------CCCCcEEEEecC
Confidence 45666777799999999999999997653 344566789999999999 999999999999
Q ss_pred CCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCc-----eEEEEEeCCCcEEEeeeccCCC
Q 021036 156 DGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRL-----MLLAVGKGSGSFDLWKCDISCN 230 (318)
Q Consensus 156 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~-----~~l~~~~~dg~i~vw~~~~~~~ 230 (318)
| ..+||+.+++..+........ +.....+.|+ .++ .+++....-+.|+.|++....+
T Consensus 207 d-~~~VW~~~~g~~~a~~t~~~k------------~~~~~~cRF~-----~d~~~~~l~laa~~~~~~~v~~~~~~~w~~ 268 (398)
T KOG0771|consen 207 D-SARVWSVNTGAALARKTPFSK------------DEMFSSCRFS-----VDNAQETLRLAASQFPGGGVRLCDISLWSG 268 (398)
T ss_pred C-ceEEEEeccCchhhhcCCccc------------chhhhhceec-----ccCCCceEEEEEecCCCCceeEEEeeeecc
Confidence 9 999999999965554432221 2234555666 333 3344444556677765433222
Q ss_pred e-eeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCC
Q 021036 231 K-FDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPG 309 (318)
Q Consensus 231 ~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 309 (318)
. .-+..+...-...|++++.+++|++++.|+.||.|-|++..+-+...+..+. |...|+.+.|+||
T Consensus 269 ~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~a-------------H~~~VT~ltF~Pd 335 (398)
T KOG0771|consen 269 SNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEA-------------HLGFVTGLTFSPD 335 (398)
T ss_pred ccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhh-------------heeeeeeEEEcCC
Confidence 1 0011111222347899999999999999999999999998775555443333 7789999999999
Q ss_pred CcEEEEE
Q 021036 310 NLVVAMV 316 (318)
Q Consensus 310 ~~~l~~~ 316 (318)
.+++++.
T Consensus 336 sr~~~sv 342 (398)
T KOG0771|consen 336 SRYLASV 342 (398)
T ss_pred cCccccc
Confidence 9988763
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.4e-17 Score=132.56 Aligned_cols=138 Identities=25% Similarity=0.226 Sum_probs=102.0
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEE
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVS 97 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~ 97 (318)
+.++||+.|..||+|.++.+.--..- .. +.+ ...+.+|..+|+++.|+++|.+||+|+.+|.|.
T Consensus 27 ~~laT~G~D~~iriW~v~r~~~~~~~--------~~------V~y--~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~ 90 (434)
T KOG1009|consen 27 NKLATAGGDKDIRIWKVNRSEPGGGD--------MK------VEY--LSSLSRHTRAVNVVRFSPDGELLASGGDGGEVF 90 (434)
T ss_pred cceecccCccceeeeeeeecCCCCCc--------ee------EEE--eecccCCcceeEEEEEcCCcCeeeecCCCceEE
Confidence 37899999999999988765432210 00 222 124677888899999999999999999999999
Q ss_pred EEEccCCccccc--cccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecc
Q 021036 98 LWRICVPKCYSV--EDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEA 175 (318)
Q Consensus 98 iw~~~~~~~~~~--~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 175 (318)
+|-...-..... +.....+.....+.+.+|...|..++| ++++.++++++.|..+++||+..|+....+..
T Consensus 91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~W-------s~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~d 163 (434)
T KOG1009|consen 91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAW-------SPDSNFLVSGSVDNSVRLWDVHAGQLLAILDD 163 (434)
T ss_pred EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhc-------cCCCceeeeeeccceEEEEEeccceeEeeccc
Confidence 998773111000 001112224456677899999999999 99999999999999999999999998887765
Q ss_pred ccc
Q 021036 176 HCV 178 (318)
Q Consensus 176 ~~~ 178 (318)
|..
T Consensus 164 h~~ 166 (434)
T KOG1009|consen 164 HEH 166 (434)
T ss_pred ccc
Confidence 553
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.77 E-value=7e-18 Score=136.47 Aligned_cols=220 Identities=16% Similarity=0.178 Sum_probs=155.9
Q ss_pred ccccccCCCCCcc-EEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEE
Q 021036 73 YPVPQNGSSNWFS-ILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLV 151 (318)
Q Consensus 73 ~~v~~~~~s~~~~-~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~ 151 (318)
.+|..++|.++.. .+++|+.|..|+||.++.++.-. .....+.+..+..|...|+++.| +++|++|+
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~-----~~~~V~y~s~Ls~H~~aVN~vRf-------~p~gelLA 81 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGG-----GDMKVEYLSSLSRHTRAVNVVRF-------SPDGELLA 81 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCC-----CceeEEEeecccCCcceeEEEEE-------cCCcCeee
Confidence 4677777776644 99999999999999997644210 00124566778899999999999 99999999
Q ss_pred EEeCCCcEEEEECCCcceeeeecccc-----cccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeec
Q 021036 152 TGSSDGSVRIWDGYIQELQKSAEAHC-----VPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCD 226 (318)
Q Consensus 152 s~~~d~~v~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~ 226 (318)
+|+.+|.|.+|....-... .... .+.-..+....+|...++.++|+ |++.++++++.|..+++| |
T Consensus 82 Sg~D~g~v~lWk~~~~~~~---~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws-----~d~~~l~s~s~dns~~l~--D 151 (434)
T KOG1009|consen 82 SGGDGGEVFLWKQGDVRIF---DADTEADLNKEKWVVKKVLRGHRDDIYDLAWS-----PDSNFLVSGSVDNSVRLW--D 151 (434)
T ss_pred ecCCCceEEEEEecCcCCc---cccchhhhCccceEEEEEecccccchhhhhcc-----CCCceeeeeeccceEEEE--E
Confidence 9999999999987631111 1111 12223345556788899999999 999999999999999999 6
Q ss_pred cCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCcc---ccccC--CCc----
Q 021036 227 ISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQ---SCTDL--PDA---- 297 (318)
Q Consensus 227 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~---~~~~~--~~h---- 297 (318)
...+. ....+.+|...+..++|.|-++++++-+.|...+.+++..............+..+ +.... .-|
T Consensus 152 v~~G~--l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTl 229 (434)
T KOG1009|consen 152 VHAGQ--LLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETL 229 (434)
T ss_pred eccce--eEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCch
Confidence 66776 66778889999999999999999999999998888887653332211100000000 00000 011
Q ss_pred ceeeeEEEEcCCCcEEEEE
Q 021036 298 FVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 298 ~~~v~~v~~sp~~~~l~~~ 316 (318)
..-...++|+|||..+++.
T Consensus 230 ksFFrRlsfTPdG~llvtP 248 (434)
T KOG1009|consen 230 KSFFRRLSFTPDGSLLVTP 248 (434)
T ss_pred hhhhhhcccCCCCcEEEcc
Confidence 1234578999999988864
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6e-17 Score=126.79 Aligned_cols=180 Identities=17% Similarity=0.160 Sum_probs=128.7
Q ss_pred ccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEe
Q 021036 75 VPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS 154 (318)
Q Consensus 75 v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~ 154 (318)
|.++.|++.++.|++++.||++++|++...+ ++..-.|..++.+.+| .+ ...+++|+
T Consensus 16 IS~v~f~~~~~~LLvssWDgslrlYdv~~~~---------------l~~~~~~~~plL~c~F-------~d-~~~~~~G~ 72 (323)
T KOG1036|consen 16 ISSVKFSPSSSDLLVSSWDGSLRLYDVPANS---------------LKLKFKHGAPLLDCAF-------AD-ESTIVTGG 72 (323)
T ss_pred eeeEEEcCcCCcEEEEeccCcEEEEeccchh---------------hhhheecCCceeeeec-------cC-CceEEEec
Confidence 3344444444888888899999999998742 2223358899999999 33 45799999
Q ss_pred CCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeE
Q 021036 155 SDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDK 234 (318)
Q Consensus 155 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 234 (318)
.||.|+.+|+.++..... ..|..++.++..+ +....+++|++|++|++| |.+... .
T Consensus 73 ~dg~vr~~Dln~~~~~~i---------------gth~~~i~ci~~~-----~~~~~vIsgsWD~~ik~w--D~R~~~--~ 128 (323)
T KOG1036|consen 73 LDGQVRRYDLNTGNEDQI---------------GTHDEGIRCIEYS-----YEVGCVISGSWDKTIKFW--DPRNKV--V 128 (323)
T ss_pred cCceEEEEEecCCcceee---------------ccCCCceEEEEee-----ccCCeEEEcccCccEEEE--eccccc--c
Confidence 999999999998764432 2245589999999 788899999999999999 666533 3
Q ss_pred eeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCcee-eeecCCCCCCccccccCCCcceeeeEEEEcCCCcEE
Q 021036 235 VGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLS-QVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVV 313 (318)
Q Consensus 235 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l 313 (318)
+..+. ....|.++... |..|+.|+.|..|.+||+++-... +....+. .-.+++|++-|++.-.
T Consensus 129 ~~~~d-~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~l-------------kyqtR~v~~~pn~eGy 192 (323)
T KOG1036|consen 129 VGTFD-QGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSL-------------KYQTRCVALVPNGEGY 192 (323)
T ss_pred ccccc-cCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhccccc-------------eeEEEEEEEecCCCce
Confidence 33333 34478887655 778999999999999999874332 1111111 1267888888866555
Q ss_pred EEEe
Q 021036 314 AMVQ 317 (318)
Q Consensus 314 ~~~~ 317 (318)
+++.
T Consensus 193 ~~sS 196 (323)
T KOG1036|consen 193 VVSS 196 (323)
T ss_pred EEEe
Confidence 5543
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-17 Score=144.11 Aligned_cols=194 Identities=18% Similarity=0.189 Sum_probs=149.2
Q ss_pred ccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcE
Q 021036 17 THPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKV 96 (318)
Q Consensus 17 ~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i 96 (318)
...+++|..-|++|++|+.+.+.+-.+.+ |... ++|+.++... + ..++||+++.|..|
T Consensus 471 gqhLAsGDr~GnlrVy~Lq~l~~~~~~eA----HesE---ilcLeyS~p~---------~------~~kLLASasrdRlI 528 (1080)
T KOG1408|consen 471 GQHLASGDRGGNLRVYDLQELEYTCFMEA----HESE---ILCLEYSFPV---------L------TNKLLASASRDRLI 528 (1080)
T ss_pred cceecccCccCceEEEEehhhhhhhheec----ccce---eEEEeecCch---------h------hhHhhhhccCCceE
Confidence 34467777889999999988766555554 4444 4456665321 0 13799999999999
Q ss_pred EEEEccCCccccccccccCCceeEEeeeccccc-----------------------------------------------
Q 021036 97 SLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNS----------------------------------------------- 129 (318)
Q Consensus 97 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~----------------------------------------------- 129 (318)
.++|+...- .+++++.+|..
T Consensus 529 HV~Dv~rny-------------~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ 595 (1080)
T KOG1408|consen 529 HVYDVKRNY-------------DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLS 595 (1080)
T ss_pred EEEeccccc-------------chhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccc
Confidence 999997532 22233333333
Q ss_pred --cEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCC
Q 021036 130 --WITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPR 207 (318)
Q Consensus 130 --~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~ 207 (318)
.++.++. .|..+++++++.|+.|+|||+.+++..+.|++... +.+..--+... |.
T Consensus 596 ktTlYDm~V-------dp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~-----------~eG~lIKv~lD-----PS 652 (1080)
T KOG1408|consen 596 KTTLYDMAV-------DPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRD-----------HEGDLIKVILD-----PS 652 (1080)
T ss_pred cceEEEeee-------CCCcceEEEEecccceEEEeccccceeeeeccccc-----------CCCceEEEEEC-----CC
Confidence 3555555 56677999999999999999999999998886543 34455566777 99
Q ss_pred ceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEec
Q 021036 208 LMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFH 272 (318)
Q Consensus 208 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 272 (318)
|.++++.+.|.++.+| |..+++ ++.++.||...|+.+.|.+|-+.|++.+.||.|++|.+.
T Consensus 653 giY~atScsdktl~~~--Df~sgE--cvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 653 GIYLATSCSDKTLCFV--DFVSGE--CVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred ccEEEEeecCCceEEE--Eeccch--hhhhhcCcchheeeeeecccchhheeecCCceEEEEECc
Confidence 9999999999999999 566776 788999999999999999999999999999999999885
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.1e-17 Score=135.56 Aligned_cols=202 Identities=15% Similarity=0.147 Sum_probs=141.2
Q ss_pred CCCCcccccccCCCCCc--cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCC
Q 021036 68 LSSKKYPVPQNGSSNWF--SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSN 145 (318)
Q Consensus 68 ~~~~~~~v~~~~~s~~~--~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 145 (318)
.+.+...|++++|.|.. +++|+|..-|.|-+||+.+.+.. ..-+..+..|..+|.+|.|. +.
T Consensus 182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d----------~d~v~~f~~hs~~Vs~l~F~------P~ 245 (498)
T KOG4328|consen 182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKD----------KDGVYLFTPHSGPVSGLKFS------PA 245 (498)
T ss_pred eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCc----------cCceEEeccCCccccceEec------CC
Confidence 44566777788887753 68999999999999999632211 23455678899999999993 34
Q ss_pred CCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeee
Q 021036 146 PQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKC 225 (318)
Q Consensus 146 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~ 225 (318)
+...+++.|.||+|++-|++++.....+.... ....++.+.++ .+...++.+..=|...+||.
T Consensus 246 n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~------------d~~~fs~~d~~-----~e~~~vl~~~~~G~f~~iD~ 308 (498)
T KOG4328|consen 246 NTSQIYSSSYDGTIRLQDFEGNISEEVLSLDT------------DNIWFSSLDFS-----AESRSVLFGDNVGNFNVIDL 308 (498)
T ss_pred ChhheeeeccCceeeeeeecchhhHHHhhcCc------------cceeeeecccc-----CCCccEEEeecccceEEEEe
Confidence 45679999999999999998764333222211 12256677776 56666667776779999965
Q ss_pred ccCCCeeeEeeeeecccCceeEEEEcCCC-CEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEE
Q 021036 226 DISCNKFDKVGSYNAHDQVVTGLAWAFDG-CCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGM 304 (318)
Q Consensus 226 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v 304 (318)
+....+ ...+.-|...|..|+++|.. .+|||++.|++++|||++.-....-+.- ....|.-.|.++
T Consensus 309 R~~~s~---~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~l----------st~~HrrsV~sA 375 (498)
T KOG4328|consen 309 RTDGSE---YENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFL----------STLPHRRSVNSA 375 (498)
T ss_pred ecCCcc---chhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcce----------ecccccceeeee
Confidence 544433 33455688899999999965 4899999999999999986221110000 122377799999
Q ss_pred EEcCCCcEEEE
Q 021036 305 AVSPGNLVVAM 315 (318)
Q Consensus 305 ~~sp~~~~l~~ 315 (318)
.|||.+-.|+|
T Consensus 376 yFSPs~gtl~T 386 (498)
T KOG4328|consen 376 YFSPSGGTLLT 386 (498)
T ss_pred EEcCCCCceEe
Confidence 99996544554
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.4e-17 Score=137.69 Aligned_cols=220 Identities=15% Similarity=0.173 Sum_probs=163.5
Q ss_pred eeecccccCCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeee
Q 021036 60 VAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVL 139 (318)
Q Consensus 60 ~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~ 139 (318)
..|++...+..|...+..+.+.+....|++++.||.+++|+++... ..-....+++.+|.+|.++|.|+++
T Consensus 282 k~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~------~s~~~~~epi~tfraH~gPVl~v~v--- 352 (577)
T KOG0642|consen 282 KKWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAK------KSAEKDVEPILTFRAHEGPVLCVVV--- 352 (577)
T ss_pred eecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccC------CccccceeeeEEEecccCceEEEEe---
Confidence 6799888888899999999999999999999999999999994311 0111225788899999999999999
Q ss_pred cCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCc
Q 021036 140 SSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGS 219 (318)
Q Consensus 140 ~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~ 219 (318)
+.+++.+++|+-||+|+.|++.... -....+ ..+.+.....+|...++.++++ +....|++++.||+
T Consensus 353 ----~~n~~~~ysgg~Dg~I~~w~~p~n~--dp~ds~--dp~vl~~~l~Ghtdavw~l~~s-----~~~~~Llscs~DgT 419 (577)
T KOG0642|consen 353 ----PSNGEHCYSGGIDGTIRCWNLPPNQ--DPDDSY--DPSVLSGTLLGHTDAVWLLALS-----STKDRLLSCSSDGT 419 (577)
T ss_pred ----cCCceEEEeeccCceeeeeccCCCC--Cccccc--Ccchhccceeccccceeeeeec-----ccccceeeecCCce
Confidence 9999999999999999999876221 111111 1223345567788899999999 88889999999999
Q ss_pred EEEeeeccCCCee---e-------Ee--------------------------------eeee--c-----ccCceeEEEE
Q 021036 220 FDLWKCDISCNKF---D-------KV--------------------------------GSYN--A-----HDQVVTGLAW 250 (318)
Q Consensus 220 i~vw~~~~~~~~~---~-------~~--------------------------------~~~~--~-----h~~~v~~~~~ 250 (318)
+++|+. ..... . +. ..+. . -...+..+.+
T Consensus 420 vr~w~~--~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs 497 (577)
T KOG0642|consen 420 VRLWEP--TEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVS 497 (577)
T ss_pred EEeecc--CCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEe
Confidence 999962 11110 0 00 0000 0 0123456778
Q ss_pred cCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 251 AFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 251 ~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
+|.+.+.+++..|+.|+++|..++.+.. ....|...++++++.|+|.+|++|.
T Consensus 498 ~~~~~~~~~~hed~~Ir~~dn~~~~~l~--------------s~~a~~~svtslai~~ng~~l~s~s 550 (577)
T KOG0642|consen 498 HPTADITFTAHEDRSIRFFDNKTGKILH--------------SMVAHKDSVTSLAIDPNGPYLMSGS 550 (577)
T ss_pred cCCCCeeEecccCCceecccccccccch--------------heeeccceecceeecCCCceEEeec
Confidence 8888899999999999999988876553 1223445889999999999999873
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.2e-16 Score=129.09 Aligned_cols=232 Identities=13% Similarity=0.107 Sum_probs=161.8
Q ss_pred CCCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEec
Q 021036 12 MKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGG 91 (318)
Q Consensus 12 ~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~ 91 (318)
+-|.+.+.+++.+. +.+..|+.+.+...+...... ..+. ..++|+.|.+.+ -+++|.
T Consensus 208 FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~~~~fe--k~ek-k~Vl~v~F~eng-------------------dviTgD 264 (626)
T KOG2106|consen 208 FHPTDPNLIITCGK-GHLYFWTLRGGSLVKRQGIFE--KREK-KFVLCVTFLENG-------------------DVITGD 264 (626)
T ss_pred eccCCCcEEEEeCC-ceEEEEEccCCceEEEeeccc--cccc-eEEEEEEEcCCC-------------------CEEeec
Confidence 33444555565554 468889888776544433222 2222 446677777766 568999
Q ss_pred CCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceee
Q 021036 92 RSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQK 171 (318)
Q Consensus 92 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~ 171 (318)
.+|.|.||+..+. +..+....|.+.|.+++- ..+|.+ ++|+.|+.|..||-.- +...
T Consensus 265 S~G~i~Iw~~~~~--------------~~~k~~~aH~ggv~~L~~-------lr~Gtl-lSGgKDRki~~Wd~~y-~k~r 321 (626)
T KOG2106|consen 265 SGGNILIWSKGTN--------------RISKQVHAHDGGVFSLCM-------LRDGTL-LSGGKDRKIILWDDNY-RKLR 321 (626)
T ss_pred CCceEEEEeCCCc--------------eEEeEeeecCCceEEEEE-------ecCccE-eecCccceEEeccccc-cccc
Confidence 9999999999763 333444599999999999 778855 5599999999999332 2111
Q ss_pred eecccc--ccccc-------------------------ceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEee
Q 021036 172 SAEAHC--VPFSL-------------------------LKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWK 224 (318)
Q Consensus 172 ~~~~~~--~~~~~-------------------------~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~ 224 (318)
..+..+ .+.+. ......+|......++.+ |+.+++++++.|+.+++|
T Consensus 322 ~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~h-----ps~~q~~T~gqdk~v~lW- 395 (626)
T KOG2106|consen 322 ETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATH-----PSKNQLLTCGQDKHVRLW- 395 (626)
T ss_pred cccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcC-----CChhheeeccCcceEEEc-
Confidence 111110 11111 113445677788889998 999999999999999999
Q ss_pred eccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEE
Q 021036 225 CDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGM 304 (318)
Q Consensus 225 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v 304 (318)
+ ..+ ++.+. .-..++.++.|+|.| .+|.|...|...+.|..+..+.++... . .+++.|
T Consensus 396 -~--~~k--~~wt~-~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d--~-------------~~ls~v 453 (626)
T KOG2106|consen 396 -N--DHK--LEWTK-IIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD--N-------------EQLSVV 453 (626)
T ss_pred -c--CCc--eeEEE-EecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec--C-------------CceEEE
Confidence 4 333 22222 245678999999999 899999999999999988666655443 2 388999
Q ss_pred EEcCCCcEEEEEe
Q 021036 305 AVSPGNLVVAMVQ 317 (318)
Q Consensus 305 ~~sp~~~~l~~~~ 317 (318)
+|+|+|.+||.|.
T Consensus 454 ~ysp~G~~lAvgs 466 (626)
T KOG2106|consen 454 RYSPDGAFLAVGS 466 (626)
T ss_pred EEcCCCCEEEEec
Confidence 9999999999874
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-16 Score=129.35 Aligned_cols=169 Identities=15% Similarity=0.149 Sum_probs=131.4
Q ss_pred CCCCcccccccCCCCC-ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCC
Q 021036 68 LSSKKYPVPQNGSSNW-FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNP 146 (318)
Q Consensus 68 ~~~~~~~v~~~~~s~~-~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~ 146 (318)
..+|..+|++++++|. .+.||+|+.|.+|.||.+-.+.... .-..++..+.+|...|.-+.|+|. .
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~-------~ltepvv~L~gH~rrVg~V~wHPt------A 143 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR-------DLTEPVVELYGHQRRVGLVQWHPT------A 143 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCccccc-------CcccceEEEeecceeEEEEeeccc------c
Confidence 3467777777777774 6789999999999999997543211 002567789999999999999554 3
Q ss_pred CcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeec
Q 021036 147 QVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCD 226 (318)
Q Consensus 147 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~ 226 (318)
.+.|++++.|.+|.+|++.+|+.+-++. | ...|++++|+ .+|.+|++.+.|.+|+|| |
T Consensus 144 ~NVLlsag~Dn~v~iWnv~tgeali~l~-h--------------pd~i~S~sfn-----~dGs~l~TtckDKkvRv~--d 201 (472)
T KOG0303|consen 144 PNVLLSAGSDNTVSIWNVGTGEALITLD-H--------------PDMVYSMSFN-----RDGSLLCTTCKDKKVRVI--D 201 (472)
T ss_pred hhhHhhccCCceEEEEeccCCceeeecC-C--------------CCeEEEEEec-----cCCceeeeecccceeEEE--c
Confidence 3579999999999999999998877765 3 3489999999 899999999999999999 7
Q ss_pred cCCCeeeEeeeeecccC-ceeEEEEcCCCCEEEEe---cCCCcEEEEEecC
Q 021036 227 ISCNKFDKVGSYNAHDQ-VVTGLAWAFDGCCLYSC---SQDNFVRSWIFHG 273 (318)
Q Consensus 227 ~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~---~~d~~v~iwd~~~ 273 (318)
.++++ .+.+-.+|.+ .-..+.|-.+|.++-|| ..+..+-+||...
T Consensus 202 pr~~~--~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~n 250 (472)
T KOG0303|consen 202 PRRGT--VVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNN 250 (472)
T ss_pred CCCCc--EeeecccccCCCcceeEEeccCceeeeccccccccceeccCccc
Confidence 88887 5555566765 34556788888855444 3578899998764
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3e-16 Score=134.67 Aligned_cols=161 Identities=19% Similarity=0.263 Sum_probs=130.0
Q ss_pred ccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccc-cccEEEEEeeeecCCCCCCCcEEEEE
Q 021036 75 VPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAH-NSWITSISLAVLSSDSSNPQVLLVTG 153 (318)
Q Consensus 75 v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~p~~~~~~~~~~~l~s~ 153 (318)
|.+++++...+.||.+-.||.|-||++..+-+ +...+.++ ...|.+++| . ++..|++.
T Consensus 28 I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~-------------~~~vi~g~~drsIE~L~W-------~-e~~RLFS~ 86 (691)
T KOG2048|consen 28 IVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWF-------------LEPVIHGPEDRSIESLAW-------A-EGGRLFSS 86 (691)
T ss_pred eEEEEEeccCCceeeeccCCcEEEEccCCCce-------------eeEEEecCCCCceeeEEE-------c-cCCeEEee
Confidence 77777777779999999999999999987432 23344444 568999999 5 45578888
Q ss_pred eCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeee
Q 021036 154 SSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFD 233 (318)
Q Consensus 154 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 233 (318)
+.+|.|.-||+.+++....+.... +.|.+++.+ |.+..++.|+.||.++.+ +...++.+
T Consensus 87 g~sg~i~EwDl~~lk~~~~~d~~g--------------g~IWsiai~-----p~~~~l~IgcddGvl~~~--s~~p~~I~ 145 (691)
T KOG2048|consen 87 GLSGSITEWDLHTLKQKYNIDSNG--------------GAIWSIAIN-----PENTILAIGCDDGVLYDF--SIGPDKIT 145 (691)
T ss_pred cCCceEEEEecccCceeEEecCCC--------------cceeEEEeC-----CccceEEeecCCceEEEE--ecCCceEE
Confidence 899999999999998777665443 489999999 899999999999966665 66666655
Q ss_pred EeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCcee
Q 021036 234 KVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLS 277 (318)
Q Consensus 234 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 277 (318)
.-..+...++.|.+++|+|++..+++|+.||.|++||...+...
T Consensus 146 ~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~ 189 (691)
T KOG2048|consen 146 YKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTL 189 (691)
T ss_pred EEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceE
Confidence 55556667789999999999999999999999999999875543
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.6e-17 Score=129.12 Aligned_cols=182 Identities=19% Similarity=0.201 Sum_probs=131.5
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCC--CCcEEEEEeCCCcEEEE
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSN--PQVLLVTGSSDGSVRIW 162 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~--~~~~l~s~~~d~~v~iw 162 (318)
+.+|++...|.|++||..++ +.+..++++...++.++| .. ....+.+|+.||+|++|
T Consensus 41 ~~vav~lSngsv~lyd~~tg--------------~~l~~fk~~~~~~N~vrf-------~~~ds~h~v~s~ssDG~Vr~w 99 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTG--------------QLLEEFKGPPATTNGVRF-------ISCDSPHGVISCSSDGTVRLW 99 (376)
T ss_pred eeEEEEecCCeEEEEeccch--------------hhhheecCCCCcccceEE-------ecCCCCCeeEEeccCCeEEEE
Confidence 67899999999999999984 466789999999999999 33 45679999999999999
Q ss_pred ECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe----CCCcEEEeeeccCCCeeeEeee-
Q 021036 163 DGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK----GSGSFDLWKCDISCNKFDKVGS- 237 (318)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~----~dg~i~vw~~~~~~~~~~~~~~- 237 (318)
|++.......+.-...+ ..+..+++.. ..++++++|. .+-.+.+||++.+.. ++..
T Consensus 100 D~Rs~~e~a~~~~~~~~-----------~~~f~~ld~n-----ck~~ii~~GtE~~~s~A~v~lwDvR~~qq---~l~~~ 160 (376)
T KOG1188|consen 100 DIRSQAESARISWTQQS-----------GTPFICLDLN-----CKKNIIACGTELTRSDASVVLWDVRSEQQ---LLRQL 160 (376)
T ss_pred EeecchhhhheeccCCC-----------CCcceEeecc-----CcCCeEEeccccccCceEEEEEEeccccc---hhhhh
Confidence 99976555443322211 2355666665 5778888876 567799996654443 2333
Q ss_pred eecccCceeEEEEcCC-CCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCC--cEEE
Q 021036 238 YNAHDQVVTGLAWAFD-GCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGN--LVVA 314 (318)
Q Consensus 238 ~~~h~~~v~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~--~~l~ 314 (318)
...|...|+++.|+|. ..+|++||.||-|.+||+.......-..+ -..|...|-.+.|..++ ++..
T Consensus 161 ~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~-----------viN~~sSI~~igw~~~~ykrI~c 229 (376)
T KOG1188|consen 161 NESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLH-----------VINHGSSIHLIGWLSKKYKRIMC 229 (376)
T ss_pred hhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHH-----------hhcccceeeeeeeecCCcceEEE
Confidence 3569999999999995 56999999999999999986532211100 11244578888888877 5555
Q ss_pred EEe
Q 021036 315 MVQ 317 (318)
Q Consensus 315 ~~~ 317 (318)
..|
T Consensus 230 lTH 232 (376)
T KOG1188|consen 230 LTH 232 (376)
T ss_pred EEc
Confidence 443
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2e-16 Score=141.99 Aligned_cols=234 Identities=21% Similarity=0.222 Sum_probs=151.4
Q ss_pred ccceEEeeCCCceeEee-cCCC-CCCCceecchh--c-cccccccceeeeecccccCCCCcccccccCCCCCccEEEEec
Q 021036 17 THPTVAASKSKGNSITK-IPSN-CCLPLITADQY--A-SRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGG 91 (318)
Q Consensus 17 ~~~~~t~s~d~~i~iwd-~~~~-~~~~~~~~~~~--~-~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~ 91 (318)
...+++||.||.||||+ +... +..+.++...- . ..........+.|.... .+|+++|
T Consensus 1123 ~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~------------------G~Ll~tG 1184 (1387)
T KOG1517|consen 1123 DALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQS------------------GHLLVTG 1184 (1387)
T ss_pred hhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhC------------------CeEEecC
Confidence 34479999999999994 5544 22222222110 0 00111123457787776 5666666
Q ss_pred CCCcEEEEEccCCccccccccccCCceeEEeeec-cccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcce-
Q 021036 92 RSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQ-AHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQEL- 169 (318)
Q Consensus 92 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~- 169 (318)
.-..|+|||..... ....+. +-..-|+++.- +...|+.+++|..||.|++||.+....
T Consensus 1185 d~r~IRIWDa~~E~--------------~~~diP~~s~t~vTaLS~------~~~~gn~i~AGfaDGsvRvyD~R~a~~d 1244 (1387)
T KOG1517|consen 1185 DVRSIRIWDAHKEQ--------------VVADIPYGSSTLVTALSA------DLVHGNIIAAGFADGSVRVYDRRMAPPD 1244 (1387)
T ss_pred CeeEEEEEecccce--------------eEeecccCCCccceeecc------cccCCceEEEeecCCceEEeecccCCcc
Confidence 68899999998633 333332 33455677765 355689999999999999999885322
Q ss_pred --eeeecccccccccceeeeeecccceeEEEEeeccCCCCce-EEEEEeCCCcEEEeeeccCCCeeeEeeeeecc---cC
Q 021036 170 --QKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLM-LLAVGKGSGSFDLWKCDISCNKFDKVGSYNAH---DQ 243 (318)
Q Consensus 170 --~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h---~~ 243 (318)
+.....|.. ..+|..+.+. +.|. .|++|+.||.|++||+.+.... ...+...| .+
T Consensus 1245 s~v~~~R~h~~------------~~~Iv~~slq-----~~G~~elvSgs~~G~I~~~DlR~~~~e--~~~~iv~~~~yGs 1305 (1387)
T KOG1517|consen 1245 SLVCVYREHND------------VEPIVHLSLQ-----RQGLGELVSGSQDGDIQLLDLRMSSKE--TFLTIVAHWEYGS 1305 (1387)
T ss_pred ccceeecccCC------------cccceeEEee-----cCCCcceeeeccCCeEEEEecccCccc--ccceeeeccccCc
Confidence 222222221 1137788887 5553 5999999999999966553111 22222223 23
Q ss_pred ceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 244 VVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 244 ~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
..+++..+++...+|+|+. +.|+||++.+.++..+..++.. +....+.+.+++|+|-.-++|+|
T Consensus 1306 ~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F--------~~q~~gs~scL~FHP~~~llAaG 1369 (1387)
T KOG1517|consen 1306 ALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGF--------MGQRIGSVSCLAFHPHRLLLAAG 1369 (1387)
T ss_pred cceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCccc--------ccCcCCCcceeeecchhHhhhhc
Confidence 5899999999999999998 9999999998877766654321 11123466899999988777766
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-16 Score=125.62 Aligned_cols=208 Identities=14% Similarity=0.114 Sum_probs=148.6
Q ss_pred cccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEE
Q 021036 74 PVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTG 153 (318)
Q Consensus 74 ~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~ 153 (318)
+|+|.++++++..+|.+.....|.||.....+. .+...+++.|...|++++| .+..+.|++|
T Consensus 12 pitchAwn~drt~iAv~~~~~evhiy~~~~~~~-----------w~~~htls~Hd~~vtgvdW-------ap~snrIvtc 73 (361)
T KOG1523|consen 12 PITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL-----------WEPAHTLSEHDKIVTGVDW-------APKSNRIVTC 73 (361)
T ss_pred ceeeeeecCCCceEEeccCCceEEEEEecCCCC-----------ceeceehhhhCcceeEEee-------cCCCCceeEc
Confidence 344444444449999999999999999987553 3577889999999999999 8888899999
Q ss_pred eCCCcEEEEECCC-cceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCee
Q 021036 154 SSDGSVRIWDGYI-QELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKF 232 (318)
Q Consensus 154 ~~d~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~ 232 (318)
+.|..-++|.... ++-..++.. .-+....+++.|+ |.++.||+|+....|.||-+..+..-+
T Consensus 74 s~drnayVw~~~~~~~WkptlvL------------lRiNrAAt~V~Ws-----P~enkFAVgSgar~isVcy~E~ENdWW 136 (361)
T KOG1523|consen 74 SHDRNAYVWTQPSGGTWKPTLVL------------LRINRAATCVKWS-----PKENKFAVGSGARLISVCYYEQENDWW 136 (361)
T ss_pred cCCCCccccccCCCCeeccceeE------------EEeccceeeEeec-----CcCceEEeccCccEEEEEEEeccccee
Confidence 9999999999843 333332221 1234478999999 999999999999999999655444332
Q ss_pred eEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeee-cCCCCCCcc---ccccCCCcceeeeEEEEcC
Q 021036 233 DKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVS-IPTNTPGLQ---SCTDLPDAFVSCLGMAVSP 308 (318)
Q Consensus 233 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~-~~~~~~~~~---~~~~~~~h~~~v~~v~~sp 308 (318)
-..+.-+.+...|++++|+|++-+|++|+.|+.+++|...-..+...+ ..+-+..+. -..+.....+.+.++.|+|
T Consensus 137 VsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~ 216 (361)
T KOG1523|consen 137 VSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSP 216 (361)
T ss_pred hhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCC
Confidence 221222346788999999999999999999999999986433222211 111111111 1112224557899999999
Q ss_pred CCcEEEEE
Q 021036 309 GNLVVAMV 316 (318)
Q Consensus 309 ~~~~l~~~ 316 (318)
+|..|+-+
T Consensus 217 sG~~lawv 224 (361)
T KOG1523|consen 217 SGNRLAWV 224 (361)
T ss_pred CCCEeeEe
Confidence 99888743
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=6e-16 Score=117.58 Aligned_cols=180 Identities=19% Similarity=0.198 Sum_probs=120.7
Q ss_pred cccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeC
Q 021036 76 PQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSS 155 (318)
Q Consensus 76 ~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~ 155 (318)
+.-+++|.+++|++|..+|.|-+..++.-..- ...+.....+..+++|.++|+.++| . .++|++|+
T Consensus 14 f~qa~sp~~~~l~agn~~G~iav~sl~sl~s~----sa~~~gk~~iv~eqahdgpiy~~~f-------~--d~~Lls~g- 79 (325)
T KOG0649|consen 14 FAQAISPSKQYLFAGNLFGDIAVLSLKSLDSG----SAEPPGKLKIVPEQAHDGPIYYLAF-------H--DDFLLSGG- 79 (325)
T ss_pred HHHhhCCcceEEEEecCCCeEEEEEehhhhcc----ccCCCCCcceeeccccCCCeeeeee-------e--hhheeecc-
Confidence 33344444499999999999999998742110 0111122345566899999999999 3 44566665
Q ss_pred CCcEEEEECCCcceeeeec-c--cccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCee
Q 021036 156 DGSVRIWDGYIQELQKSAE-A--HCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKF 232 (318)
Q Consensus 156 d~~v~iwd~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~ 232 (318)
||.|+=|.-+....-...+ . ...|. +.-...-..|+++-+. |..+-++.++.|+.++-| |+++++
T Consensus 80 dG~V~gw~W~E~~es~~~K~lwe~~~P~----~~~~~evPeINam~ld-----P~enSi~~AgGD~~~y~~--dlE~G~- 147 (325)
T KOG0649|consen 80 DGLVYGWEWNEEEESLATKRLWEVKIPM----QVDAVEVPEINAMWLD-----PSENSILFAGGDGVIYQV--DLEDGR- 147 (325)
T ss_pred CceEEEeeehhhhhhccchhhhhhcCcc----ccCcccCCccceeEec-----cCCCcEEEecCCeEEEEE--EecCCE-
Confidence 5999999876432210000 0 00000 0001112368888888 666666666689999998 777888
Q ss_pred eEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecC
Q 021036 233 DKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIP 282 (318)
Q Consensus 233 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 282 (318)
...++++|+..|.++.--.....+++|++||++|+||+++++..+....
T Consensus 148 -i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~ 196 (325)
T KOG0649|consen 148 -IQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEP 196 (325)
T ss_pred -EEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEecc
Confidence 5568999999999998755555799999999999999999877655443
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.4e-17 Score=138.33 Aligned_cols=200 Identities=15% Similarity=0.099 Sum_probs=146.3
Q ss_pred CCCCcccccccCCCCCccEEEEecCCCc-----EEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCC
Q 021036 68 LSSKKYPVPQNGSSNWFSILAVGGRSGK-----VSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSD 142 (318)
Q Consensus 68 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~-----i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 142 (318)
+.+|.++|++++.+|+|+++|++++... |++|+..+ ...++.+.+|+-.|+.++|
T Consensus 521 LYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~--------------W~~~~~L~~HsLTVT~l~F------ 580 (764)
T KOG1063|consen 521 LYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN--------------WLQVQELEGHSLTVTRLAF------ 580 (764)
T ss_pred hccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc--------------hhhhheecccceEEEEEEE------
Confidence 7799999999999999999999987553 88999876 4455678999999999999
Q ss_pred CCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEE
Q 021036 143 SSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDL 222 (318)
Q Consensus 143 ~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~v 222 (318)
+++|++|++.++|+++.+|......... +. ......|..-|.+..|+ |++.+|+|+|.|.+|++
T Consensus 581 -Spdg~~LLsvsRDRt~sl~~~~~~~~~e-~~---------fa~~k~HtRIIWdcsW~-----pde~~FaTaSRDK~VkV 644 (764)
T KOG1063|consen 581 -SPDGRYLLSVSRDRTVSLYEVQEDIKDE-FR---------FACLKAHTRIIWDCSWS-----PDEKYFATASRDKKVKV 644 (764)
T ss_pred -CCCCcEEEEeecCceEEeeeeecccchh-hh---------hccccccceEEEEcccC-----cccceeEEecCCceEEE
Confidence 9999999999999999999875432111 11 01134566788999998 99999999999999999
Q ss_pred eeeccCCCeeeEeeeeecccCceeEEEEcCC-----CCEEEEecCCCcEEEEEecCCc-e---eeeecCCCCCCcccccc
Q 021036 223 WKCDISCNKFDKVGSYNAHDQVVTGLAWAFD-----GCCLYSCSQDNFVRSWIFHGNS-L---SQVSIPTNTPGLQSCTD 293 (318)
Q Consensus 223 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----~~~l~s~~~d~~v~iwd~~~~~-~---~~~~~~~~~~~~~~~~~ 293 (318)
|...-...++.+-.....+...|++++|.|- +..++.|-+.|.|.+|...... . ....... ....
T Consensus 645 W~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~------~l~~ 718 (764)
T KOG1063|consen 645 WEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDT------RLCA 718 (764)
T ss_pred EeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeecc------cccc
Confidence 9533221121111123457889999999873 2367888999999999865211 1 1111101 1124
Q ss_pred CCCcceeeeEEEEcCC
Q 021036 294 LPDAFVSCLGMAVSPG 309 (318)
Q Consensus 294 ~~~h~~~v~~v~~sp~ 309 (318)
...|...|+.+.|.|.
T Consensus 719 ~~~~~~aV~rl~w~p~ 734 (764)
T KOG1063|consen 719 TIGPDSAVNRLLWRPT 734 (764)
T ss_pred ccChHHhhheeEeccc
Confidence 4567889999999975
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.5e-17 Score=139.64 Aligned_cols=196 Identities=18% Similarity=0.212 Sum_probs=145.9
Q ss_pred eeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEEEEcc
Q 021036 23 ASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRIC 102 (318)
Q Consensus 23 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~ 102 (318)
++.-|.|-|+++...-.++.-..........+ +.+.|+|-. ...||+++.||.|+||.+.
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~v---tDl~WdPFD-----------------~~rLAVa~ddg~i~lWr~~ 658 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGVMPGLFNGTLV---TDLHWDPFD-----------------DERLAVATDDGQINLWRLT 658 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCcccccccccCcee---eecccCCCC-----------------hHHeeecccCceEEEEEec
Confidence 45578899999988655555444444444443 348999876 5899999999999999998
Q ss_pred CCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeeccccccccc
Q 021036 103 VPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSL 182 (318)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~ 182 (318)
.+.... ....+...+..|...|++++|+|.. .+.|++++.|-+|++||+++++....+.+|..
T Consensus 659 a~gl~e-------~~~tPe~~lt~h~eKI~slRfHPLA------advLa~asyd~Ti~lWDl~~~~~~~~l~gHtd---- 721 (1012)
T KOG1445|consen 659 ANGLPE-------NEMTPEKILTIHGEKITSLRFHPLA------ADVLAVASYDSTIELWDLANAKLYSRLVGHTD---- 721 (1012)
T ss_pred cCCCCc-------ccCCcceeeecccceEEEEEecchh------hhHhhhhhccceeeeeehhhhhhhheeccCcC----
Confidence 653211 0123456788999999999996654 35699999999999999999988777776655
Q ss_pred ceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeeccc-CceeEEEEcCCCCEEEEec
Q 021036 183 LKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHD-QVVTGLAWAFDGCCLYSCS 261 (318)
Q Consensus 183 ~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~ 261 (318)
.|..++|+ |+|+.+|+.+.||+|++| +.+..+ +++++-++-. ..--.+.|--+|+++++.+
T Consensus 722 ----------qIf~~AWS-----pdGr~~AtVcKDg~~rVy--~Prs~e-~pv~Eg~gpvgtRgARi~wacdgr~viv~G 783 (1012)
T KOG1445|consen 722 ----------QIFGIAWS-----PDGRRIATVCKDGTLRVY--EPRSRE-QPVYEGKGPVGTRGARILWACDGRIVIVVG 783 (1012)
T ss_pred ----------ceeEEEEC-----CCCcceeeeecCceEEEe--CCCCCC-CccccCCCCccCcceeEEEEecCcEEEEec
Confidence 89999999 999999999999999999 555543 2444433221 2224577888999888877
Q ss_pred CC----CcEEEEEecC
Q 021036 262 QD----NFVRSWIFHG 273 (318)
Q Consensus 262 ~d----~~v~iwd~~~ 273 (318)
.| +.|.+||..+
T Consensus 784 fdk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 784 FDKSSERQVQMYDAQT 799 (1012)
T ss_pred ccccchhhhhhhhhhh
Confidence 66 5688888764
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.7e-16 Score=131.73 Aligned_cols=185 Identities=19% Similarity=0.243 Sum_probs=135.2
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEEC
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDG 164 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~ 164 (318)
..|+.++.||.+.|.+-. ++..+.+.+|.+.|.+-+| +++|.-|++++.||.|++|.-
T Consensus 76 d~~~i~s~DGkf~il~k~---------------~rVE~sv~AH~~A~~~gRW-------~~dGtgLlt~GEDG~iKiWSr 133 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKS---------------ARVERSISAHAAAISSGRW-------SPDGAGLLTAGEDGVIKIWSR 133 (737)
T ss_pred ceEEEEcCCceEEEeccc---------------chhhhhhhhhhhhhhhccc-------CCCCceeeeecCCceEEEEec
Confidence 578888999999998765 3455678899999999999 999999999999999999984
Q ss_pred CCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCc
Q 021036 165 YIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQV 244 (318)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~ 244 (318)
+|-...++... ..+|+|++|. |+.+.++-+. .+.+.+= .+.... .+-.+++|.+-
T Consensus 134 -sGMLRStl~Q~--------------~~~v~c~~W~-----p~S~~vl~c~-g~h~~IK--pL~~n~--k~i~WkAHDGi 188 (737)
T KOG1524|consen 134 -SGMLRSTVVQN--------------EESIRCARWA-----PNSNSIVFCQ-GGHISIK--PLAANS--KIIRWRAHDGL 188 (737)
T ss_pred -cchHHHHHhhc--------------CceeEEEEEC-----CCCCceEEec-CCeEEEe--eccccc--ceeEEeccCcE
Confidence 34332222222 2389999999 7765554443 3445553 222222 45568899999
Q ss_pred eeEEEEcCCCCEEEEecCCCcEEEEEecCCcee----------eeecCCCCCCcccc-ccC---CCcceeeeEEEEcCCC
Q 021036 245 VTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLS----------QVSIPTNTPGLQSC-TDL---PDAFVSCLGMAVSPGN 310 (318)
Q Consensus 245 v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~----------~~~~~~~~~~~~~~-~~~---~~h~~~v~~v~~sp~~ 310 (318)
|.++.|++....+++|++|-..++||..+..+. .+.+.++..++.++ ..+ ....+.|..++||+||
T Consensus 189 iL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd~~~~v~S~nt~R~~~p~~GSifnlsWS~DG 268 (737)
T KOG1524|consen 189 VLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPEKDYLLWSYNTARFSSPRVGSIFNLSWSADG 268 (737)
T ss_pred EEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccccceeeeeeeeeeecCCCccceEEEEEcCCC
Confidence 999999999999999999999999998764442 34455554444422 222 2455788899999999
Q ss_pred cEEEEE
Q 021036 311 LVVAMV 316 (318)
Q Consensus 311 ~~l~~~ 316 (318)
..+++|
T Consensus 269 TQ~a~g 274 (737)
T KOG1524|consen 269 TQATCG 274 (737)
T ss_pred ceeecc
Confidence 988876
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-15 Score=120.69 Aligned_cols=198 Identities=12% Similarity=0.121 Sum_probs=142.3
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEE
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVS 97 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~ 97 (318)
..++++-..++++++|..+++.+..+... ...... +.+.... .+..+.+|+.||.|+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~----~~~~N~---vrf~~~d----------------s~h~v~s~ssDG~Vr 97 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGP----PATTNG---VRFISCD----------------SPHGVISCSSDGTVR 97 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCC----CCcccc---eEEecCC----------------CCCeeEEeccCCeEE
Confidence 45788899999999999999888887652 222111 3333321 247899999999999
Q ss_pred EEEccCCccccccccccCCceeEEeeecccc-ccEEEEEeeeecCCCCCCCcEEEEEe----CCCcEEEEECCCcce-ee
Q 021036 98 LWRICVPKCYSVEDCKVPTTAVLIGLFQAHN-SWITSISLAVLSSDSSNPQVLLVTGS----SDGSVRIWDGYIQEL-QK 171 (318)
Q Consensus 98 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~p~~~~~~~~~~~l~s~~----~d~~v~iwd~~~~~~-~~ 171 (318)
+||++... ......+..+. .+..|++- .-+++.+++|. .|..|.+||++..+. +.
T Consensus 98 ~wD~Rs~~------------e~a~~~~~~~~~~~f~~ld~-------nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~ 158 (376)
T KOG1188|consen 98 LWDIRSQA------------ESARISWTQQSGTPFICLDL-------NCKKNIIACGTELTRSDASVVLWDVRSEQQLLR 158 (376)
T ss_pred EEEeecch------------hhhheeccCCCCCcceEeec-------cCcCCeEEeccccccCceEEEEEEeccccchhh
Confidence 99999754 22334455555 45566666 55667788775 467899999997654 32
Q ss_pred eecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEc
Q 021036 172 SAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWA 251 (318)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 251 (318)
. +...|...|++++|+ |.+.++|++|+.||.|.+||+......- .+...-.|...|..+.|.
T Consensus 159 ~-------------~~eSH~DDVT~lrFH----P~~pnlLlSGSvDGLvnlfD~~~d~EeD-aL~~viN~~sSI~~igw~ 220 (376)
T KOG1188|consen 159 Q-------------LNESHNDDVTQLRFH----PSDPNLLLSGSVDGLVNLFDTKKDNEED-ALLHVINHGSSIHLIGWL 220 (376)
T ss_pred h-------------hhhhccCcceeEEec----CCCCCeEEeecccceEEeeecCCCcchh-hHHHhhcccceeeeeeee
Confidence 2 224566699999999 5778999999999999999764443322 233333477889999999
Q ss_pred CCC-CEEEEecCCCcEEEEEecCCc
Q 021036 252 FDG-CCLYSCSQDNFVRSWIFHGNS 275 (318)
Q Consensus 252 ~~~-~~l~s~~~d~~v~iwd~~~~~ 275 (318)
.++ +.|.+-+...+..+|++..+.
T Consensus 221 ~~~ykrI~clTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 221 SKKYKRIMCLTHMETFAIYELEDGS 245 (376)
T ss_pred cCCcceEEEEEccCceeEEEccCCC
Confidence 876 468888899999999997644
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-15 Score=128.13 Aligned_cols=211 Identities=18% Similarity=0.182 Sum_probs=149.2
Q ss_pred ccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcE
Q 021036 17 THPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKV 96 (318)
Q Consensus 17 ~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i 96 (318)
...++.|-..|.+.+.|....+....+.......+ ..++|++|-|.. ..++++.-.+|.+
T Consensus 185 g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~k---tsvT~ikWvpg~-----------------~~~Fl~a~~sGnl 244 (636)
T KOG2394|consen 185 GLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINK---SSVTCIKWVPGS-----------------DSLFLVAHASGNL 244 (636)
T ss_pred CcceEEeeccCceEEecchhhHHHHhhhhcccccc---cceEEEEEEeCC-----------------CceEEEEEecCce
Confidence 35567777778888777665333333333222233 347789999877 5777888899999
Q ss_pred EEEEccCCcc-----cc---------ccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEE
Q 021036 97 SLWRICVPKC-----YS---------VEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIW 162 (318)
Q Consensus 97 ~iw~~~~~~~-----~~---------~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iw 162 (318)
.++|.+-... .+ +.......+..++..+.--.+.|+..+| +++|++|++.+.||.+||+
T Consensus 245 yly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F-------S~DG~~LA~VSqDGfLRvF 317 (636)
T KOG2394|consen 245 YLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF-------SPDGKYLATVSQDGFLRIF 317 (636)
T ss_pred EEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE-------cCCCceEEEEecCceEEEe
Confidence 9997742110 00 0001111111233334334568899999 8999999999999999999
Q ss_pred ECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeeccc
Q 021036 163 DGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHD 242 (318)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~ 242 (318)
|..+.+++..++..- +...|++|+ |||+++++|+.|.-|.|| .+...+ .+..-++|.
T Consensus 318 ~fdt~eLlg~mkSYF--------------GGLLCvcWS-----PDGKyIvtGGEDDLVtVw--Sf~erR--VVARGqGHk 374 (636)
T KOG2394|consen 318 DFDTQELLGVMKSYF--------------GGLLCVCWS-----PDGKYIVTGGEDDLVTVW--SFEERR--VVARGQGHK 374 (636)
T ss_pred eccHHHHHHHHHhhc--------------cceEEEEEc-----CCccEEEecCCcceEEEE--Eeccce--EEEeccccc
Confidence 999887766554432 378899999 999999999999999999 555555 788889999
Q ss_pred CceeEEEEcCC-----------------------------------C-------------CEEEEecCCCcEEEEEecCC
Q 021036 243 QVVTGLAWAFD-----------------------------------G-------------CCLYSCSQDNFVRSWIFHGN 274 (318)
Q Consensus 243 ~~v~~~~~~~~-----------------------------------~-------------~~l~s~~~d~~v~iwd~~~~ 274 (318)
.+|..|+|+|- + -.|.+.+.|-.+.+||+...
T Consensus 375 SWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD 454 (636)
T KOG2394|consen 375 SWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTED 454 (636)
T ss_pred cceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchh
Confidence 99999999830 1 14678899999999999765
Q ss_pred cee
Q 021036 275 SLS 277 (318)
Q Consensus 275 ~~~ 277 (318)
.+.
T Consensus 455 ~L~ 457 (636)
T KOG2394|consen 455 VLV 457 (636)
T ss_pred hcc
Confidence 544
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-14 Score=116.10 Aligned_cols=240 Identities=19% Similarity=0.195 Sum_probs=147.8
Q ss_pred eEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEEE
Q 021036 20 TVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLW 99 (318)
Q Consensus 20 ~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw 99 (318)
++.+..|..||++|-.. ++...+.- ...-.+.|++|.|.+ +.-|+.|+..| |.||
T Consensus 113 fava~nddvVriy~kss-t~pt~Lks------~sQrnvtclawRPls-----------------aselavgCr~g-IciW 167 (445)
T KOG2139|consen 113 FAVATNDDVVRIYDKSS-TCPTKLKS------VSQRNVTCLAWRPLS-----------------ASELAVGCRAG-ICIW 167 (445)
T ss_pred hhhhccCcEEEEeccCC-CCCceecc------hhhcceeEEEeccCC-----------------cceeeeeecce-eEEE
Confidence 57788999999997765 44333321 112237789999998 67888888766 8999
Q ss_pred EccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeC-CCcEEEEECCCcceeeeeccccc
Q 021036 100 RICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSS-DGSVRIWDGYIQELQKSAEAHCV 178 (318)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~-d~~v~iwd~~~~~~~~~~~~~~~ 178 (318)
.....-........-......+-...+| .+|+++.| .++|..+++++. |..|.|||..++.........
T Consensus 168 ~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqw-------n~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~g-- 237 (445)
T KOG2139|consen 168 SDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQW-------NEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKG-- 237 (445)
T ss_pred EcCcccccccccccccccchhheeCCCC-ceeeEEEE-------cCCCCEEeecccCcceEEEEcCCCCCcccccccC--
Confidence 8864221100000000001112223455 68999999 899999999885 689999999998766543211
Q ss_pred ccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEE
Q 021036 179 PFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLY 258 (318)
Q Consensus 179 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 258 (318)
.+.++-+.|+ ||+.+|+.+..|+..++|+ ...... ... ..-..+.|...+|+|+|++|+
T Consensus 238 ------------lgg~slLkwS-----Pdgd~lfaAt~davfrlw~--e~q~wt-~er-w~lgsgrvqtacWspcGsfLL 296 (445)
T KOG2139|consen 238 ------------LGGFSLLKWS-----PDGDVLFAATCDAVFRLWQ--ENQSWT-KER-WILGSGRVQTACWSPCGSFLL 296 (445)
T ss_pred ------------CCceeeEEEc-----CCCCEEEEecccceeeeeh--hcccce-ecc-eeccCCceeeeeecCCCCEEE
Confidence 2378889999 9999999999999999994 222211 111 122345899999999999765
Q ss_pred EecCCCcEEEEEecCCce-eeeecCCCCC---Ccc------ccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 259 SCSQDNFVRSWIFHGNSL-SQVSIPTNTP---GLQ------SCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 259 s~~~d~~v~iwd~~~~~~-~~~~~~~~~~---~~~------~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
.... |.=++|.+..... .......... .++ ......-..+...+++|.|.|.+||+.
T Consensus 297 f~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~ 363 (445)
T KOG2139|consen 297 FACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVI 363 (445)
T ss_pred EEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEE
Confidence 4433 3334666542111 1111000000 000 000111234678899999999999974
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.6e-17 Score=142.73 Aligned_cols=188 Identities=14% Similarity=0.163 Sum_probs=141.5
Q ss_pred CCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCC
Q 021036 68 LSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQ 147 (318)
Q Consensus 68 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~ 147 (318)
+.+|..+|.|..++..|.++++|+.|..++||..++.. .+....||.+.|+.++. +.+.
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~--------------~lAs~rGhs~ditdlav-------s~~n 244 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETAR--------------CLASCRGHSGDITDLAV-------SSNN 244 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccchh--------------hhccCCCCccccchhcc-------chhh
Confidence 77899999999999999999999999999999998855 45788999999999999 7888
Q ss_pred cEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeec-
Q 021036 148 VLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCD- 226 (318)
Q Consensus 148 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~- 226 (318)
..+++++.|..|++|.+..+..+..+.+|+. .|++++|+ |-. +.+.||++++||++
T Consensus 245 ~~iaaaS~D~vIrvWrl~~~~pvsvLrghtg--------------avtaiafs-----P~~----sss~dgt~~~wd~r~ 301 (1113)
T KOG0644|consen 245 TMIAAASNDKVIRVWRLPDGAPVSVLRGHTG--------------AVTAIAFS-----PRA----SSSDDGTCRIWDARL 301 (1113)
T ss_pred hhhhhcccCceEEEEecCCCchHHHHhcccc--------------ceeeeccC-----ccc----cCCCCCceEeccccc
Confidence 8999999999999999999988887776664 56666665 321 33445555555422
Q ss_pred --------------------------------------------------------------------------------
Q 021036 227 -------------------------------------------------------------------------------- 226 (318)
Q Consensus 227 -------------------------------------------------------------------------------- 226 (318)
T Consensus 302 ~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwn 381 (1113)
T KOG0644|consen 302 EPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWN 381 (1113)
T ss_pred cccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeee
Confidence
Q ss_pred cCCCeeeEeeeeecccCceeEEEEcCCCC-EEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEE
Q 021036 227 ISCNKFDKVGSYNAHDQVVTGLAWAFDGC-CLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMA 305 (318)
Q Consensus 227 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 305 (318)
+.++. ..+.+.+|...++.+.++|... ...+++.||...|||+..+...+....+ | ..+..-+
T Consensus 382 l~~g~--l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g-------------h-~kl~d~k 445 (1113)
T KOG0644|consen 382 LYTGQ--LLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG-------------H-GKLVDGK 445 (1113)
T ss_pred cccch--hhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc-------------c-ceeeccc
Confidence 11111 1222346777888899999655 5568999999999999877655544322 2 2455668
Q ss_pred EcCCCcEEEE
Q 021036 306 VSPGNLVVAM 315 (318)
Q Consensus 306 ~sp~~~~l~~ 315 (318)
||+||+.++.
T Consensus 446 FSqdgts~~l 455 (1113)
T KOG0644|consen 446 FSQDGTSIAL 455 (1113)
T ss_pred cCCCCceEec
Confidence 8888877664
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.1e-16 Score=124.38 Aligned_cols=174 Identities=15% Similarity=0.040 Sum_probs=133.3
Q ss_pred CCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeec-cccccEEEEEeeeecCCCCCC
Q 021036 68 LSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQ-AHNSWITSISLAVLSSDSSNP 146 (318)
Q Consensus 68 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~~~~ 146 (318)
+.+|++.|..+.||.++++|++|+.|..+++|+++.--. ....+++.... .|...|.|++| ...
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~--------~k~~KPI~~~~~~H~SNIF~L~F-------~~~ 116 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMV--------RKTPKPIGVMEHPHRSNIFSLEF-------DLE 116 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHh--------hcCCCCceeccCccccceEEEEE-------ccC
Confidence 668999999999999999999999999999999974210 00123444333 35689999999 788
Q ss_pred CcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeec
Q 021036 147 QVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCD 226 (318)
Q Consensus 147 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~ 226 (318)
..++++|..+++|.+.|+++.+.+..+.... ..+.|+.+..+ |..+.|++.+.++.|.+||..
T Consensus 117 N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~------------~~~~VY~m~~~-----P~DN~~~~~t~~~~V~~~D~R 179 (609)
T KOG4227|consen 117 NRFLYSGERWGTVIKHDIETKQSIYVANENN------------NRGDVYHMDQH-----PTDNTLIVVTRAKLVSFIDNR 179 (609)
T ss_pred CeeEecCCCcceeEeeecccceeeeeecccC------------cccceeecccC-----CCCceEEEEecCceEEEEecc
Confidence 8999999999999999999887776654322 24578999998 889999999999999999644
Q ss_pred cCCCeeeEeeeeecccCceeEEEEcCC-CCEEEEecCCCcEEEEEecCC
Q 021036 227 ISCNKFDKVGSYNAHDQVVTGLAWAFD-GCCLYSCSQDNFVRSWIFHGN 274 (318)
Q Consensus 227 ~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~ 274 (318)
-+.....++ -+.......+.+.|+|. ..+|++.+..+-+.+||.+..
T Consensus 180 d~~~~~~~~-~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~ 227 (609)
T KOG4227|consen 180 DRQNPISLV-LPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQ 227 (609)
T ss_pred CCCCCCcee-eecCCCccceeeeecCCCceeEEeccccCCCCceeeccc
Confidence 333222222 22334556788999996 458889999999999999753
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.9e-16 Score=119.34 Aligned_cols=157 Identities=15% Similarity=0.207 Sum_probs=115.3
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEEC
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDG 164 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~ 164 (318)
-++++|..+|.|.+||+.++... .+.+...+.......|..+|.++.| .+.-..=++|+.+..+..|++
T Consensus 166 ~lllaGyEsghvv~wd~S~~~~~----~~~~~~~kv~~~~ash~qpvlsldy-------as~~~rGisgga~dkl~~~Sl 234 (323)
T KOG0322|consen 166 FLLLAGYESGHVVIWDLSTGDKI----IQLPQSSKVESPNASHKQPVLSLDY-------ASSCDRGISGGADDKLVMYSL 234 (323)
T ss_pred EEEEEeccCCeEEEEEccCCcee----eccccccccccchhhccCcceeeee-------chhhcCCcCCCccccceeeee
Confidence 36778899999999999986321 0111112333445679999999999 333333477788888999988
Q ss_pred CCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCc
Q 021036 165 YIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQV 244 (318)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~ 244 (318)
........+. .........+..+.+. ||++.+|++++|+.|++|.+ ++.. ++..++.|.+.
T Consensus 235 ~~s~gslq~~----------~e~~lknpGv~gvrIR-----pD~KIlATAGWD~RiRVysw--rtl~--pLAVLkyHsag 295 (323)
T KOG0322|consen 235 NHSTGSLQIR----------KEITLKNPGVSGVRIR-----PDGKILATAGWDHRIRVYSW--RTLN--PLAVLKYHSAG 295 (323)
T ss_pred ccccCccccc----------ceEEecCCCccceEEc-----cCCcEEeecccCCcEEEEEe--ccCC--chhhhhhhhcc
Confidence 7431111111 0011223367888888 99999999999999999954 4555 78889999999
Q ss_pred eeEEEEcCCCCEEEEecCCCcEEEEEe
Q 021036 245 VTGLAWAFDGCCLYSCSQDNFVRSWIF 271 (318)
Q Consensus 245 v~~~~~~~~~~~l~s~~~d~~v~iwd~ 271 (318)
|.+++|+|+...+|.++.|+.|.+|++
T Consensus 296 vn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 296 VNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred eeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999999986
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3e-15 Score=116.49 Aligned_cols=205 Identities=17% Similarity=0.181 Sum_probs=136.6
Q ss_pred CCCCcccccccCCCCC-ccEEEEecCC-------CcEEEEEccCCccccccccccCCceeEEeeec-cccccEEEEEeee
Q 021036 68 LSSKKYPVPQNGSSNW-FSILAVGGRS-------GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQ-AHNSWITSISLAV 138 (318)
Q Consensus 68 ~~~~~~~v~~~~~s~~-~~~l~~g~~d-------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p 138 (318)
+..|.++|..++.+|- ..+|+++..+ ..+-||.+...... ....+.+.+..+. .+-+.|.|+.|
T Consensus 59 f~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~-----S~~~tlE~v~~Ldteavg~i~cvew-- 131 (370)
T KOG1007|consen 59 FFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQ-----SNSSTLECVASLDTEAVGKINCVEW-- 131 (370)
T ss_pred hhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCc-----cccchhhHhhcCCHHHhCceeeEEE--
Confidence 3345566777777774 4566665432 23679998753210 0011122333443 45569999999
Q ss_pred ecCCCCCCCcEEEEEeCCCcEEEEECCCcce-eeeecccccccccceeeeeecccceeEEEEeeccCC-CCceEEEEEeC
Q 021036 139 LSSDSSNPQVLLVTGSSDGSVRIWDGYIQEL-QKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQS-PRLMLLAVGKG 216 (318)
Q Consensus 139 ~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-~~~~~l~~~~~ 216 (318)
.|++..+++-. |..|.+|++..+.. ...+..... ..+....++-+|+ | .+++.+++.+
T Consensus 132 -----~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s---------~e~~~~ftsg~Ws----pHHdgnqv~tt~- 191 (370)
T KOG1007|consen 132 -----EPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSES---------AEMRHSFTSGAWS----PHHDGNQVATTS- 191 (370)
T ss_pred -----cCCCCeeEEec-cCceEEEEcccCcchheeeccccc---------ccccceecccccC----CCCccceEEEeC-
Confidence 78888888776 88999999997765 333332221 1234456677787 2 3688888876
Q ss_pred CCcEEEeeeccCCCeeeEeee-eecccCceeEEEEcCCC-CEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccC
Q 021036 217 SGSFDLWKCDISCNKFDKVGS-YNAHDQVVTGLAWAFDG-CCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDL 294 (318)
Q Consensus 217 dg~i~vw~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 294 (318)
|+++..| |.++.+ .... -.+|...|..+.|+|+- .+|++|+.||.|+|||.+..+..- ..+
T Consensus 192 d~tl~~~--D~RT~~--~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv-------------~el 254 (370)
T KOG1007|consen 192 DSTLQFW--DLRTMK--KNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPV-------------QEL 254 (370)
T ss_pred CCcEEEE--Eccchh--hhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccc-------------ccc
Confidence 9999999 555544 2223 34688999999999984 489999999999999998744332 245
Q ss_pred CCcceeeeEEEEcC-CCcEEEEE
Q 021036 295 PDAFVSCLGMAVSP-GNLVVAMV 316 (318)
Q Consensus 295 ~~h~~~v~~v~~sp-~~~~l~~~ 316 (318)
.+|+-.|++|.|+| ..++|++|
T Consensus 255 ~~HsHWvW~VRfn~~hdqLiLs~ 277 (370)
T KOG1007|consen 255 PGHSHWVWAVRFNPEHDQLILSG 277 (370)
T ss_pred CCCceEEEEEEecCccceEEEec
Confidence 56888999999999 34556555
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.4e-15 Score=115.53 Aligned_cols=206 Identities=14% Similarity=0.086 Sum_probs=146.2
Q ss_pred CCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCC
Q 021036 14 DSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRS 93 (318)
Q Consensus 14 ~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~d 93 (318)
..+...++.+-+...+.|+.....+.-..... -..|... ++++.|+|.. +.|++|+.|
T Consensus 19 n~drt~iAv~~~~~evhiy~~~~~~~w~~~ht-ls~Hd~~---vtgvdWap~s------------------nrIvtcs~d 76 (361)
T KOG1523|consen 19 NSDRTQIAVSPNNHEVHIYSMLGADLWEPAHT-LSEHDKI---VTGVDWAPKS------------------NRIVTCSHD 76 (361)
T ss_pred cCCCceEEeccCCceEEEEEecCCCCceecee-hhhhCcc---eeEEeecCCC------------------CceeEccCC
Confidence 35556677777888888887766552222211 0012222 4447777766 999999999
Q ss_pred CcEEEEEc-cCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeee
Q 021036 94 GKVSLWRI-CVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKS 172 (318)
Q Consensus 94 g~i~iw~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~ 172 (318)
..-++|.. ..++ .++.-.+..+...++++.| +|.++.|++|+....|.+|-++....-..
T Consensus 77 rnayVw~~~~~~~------------WkptlvLlRiNrAAt~V~W-------sP~enkFAVgSgar~isVcy~E~ENdWWV 137 (361)
T KOG1523|consen 77 RNAYVWTQPSGGT------------WKPTLVLLRINRAATCVKW-------SPKENKFAVGSGARLISVCYYEQENDWWV 137 (361)
T ss_pred CCccccccCCCCe------------eccceeEEEeccceeeEee-------cCcCceEEeccCccEEEEEEEecccceeh
Confidence 99999999 4444 3344556678889999999 89999999999999999998775433221
Q ss_pred ecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCC-----------e---eeEeeee
Q 021036 173 AEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCN-----------K---FDKVGSY 238 (318)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~-----------~---~~~~~~~ 238 (318)
.+++.......|.++.|+ |++-+|++|+.|++.++|..-++.- + -+.+.++
T Consensus 138 ----------sKhikkPirStv~sldWh-----pnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~ 202 (361)
T KOG1523|consen 138 ----------SKHIKKPIRSTVTSLDWH-----PNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEA 202 (361)
T ss_pred ----------hhhhCCccccceeeeecc-----CCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhh
Confidence 112223345589999999 9999999999999999996311110 0 0122233
Q ss_pred ecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCc
Q 021036 239 NAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNS 275 (318)
Q Consensus 239 ~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 275 (318)
....+.+..+.|+|+|..|+-.+.|.++.+-|.....
T Consensus 203 ~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 203 SSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred ccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 3456789999999999999999999999999987653
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.1e-16 Score=139.63 Aligned_cols=201 Identities=15% Similarity=0.203 Sum_probs=147.6
Q ss_pred cCCCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEe
Q 021036 11 KMKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVG 90 (318)
Q Consensus 11 ~~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g 90 (318)
++.....+.+++|+.||.|.|||+..-+.- ++... ......+.+++||... ..+|+++
T Consensus 123 DfN~~q~nlLASGa~~geI~iWDlnn~~tP--~~~~~---~~~~~eI~~lsWNrkv-----------------qhILAS~ 180 (1049)
T KOG0307|consen 123 DFNPFQGNLLASGADDGEILIWDLNKPETP--FTPGS---QAPPSEIKCLSWNRKV-----------------SHILASG 180 (1049)
T ss_pred eccccCCceeeccCCCCcEEEeccCCcCCC--CCCCC---CCCcccceEeccchhh-----------------hHHhhcc
Confidence 344455667899999999999999874322 22111 1122346779999877 5789999
Q ss_pred cCCCcEEEEEccCCccccccccccCCceeEEeeecccc--ccEEEEEeeeecCCCCCCCcEEEEEeCC---CcEEEEECC
Q 021036 91 GRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHN--SWITSISLAVLSSDSSNPQVLLVTGSSD---GSVRIWDGY 165 (318)
Q Consensus 91 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~p~~~~~~~~~~~l~s~~~d---~~v~iwd~~ 165 (318)
+.+|.+.|||++..+ ++-.+..+. ..+..+.|+| .+...|++++.| -.|.+||+|
T Consensus 181 s~sg~~~iWDlr~~~--------------pii~ls~~~~~~~~S~l~WhP------~~aTql~~As~dd~~PviqlWDlR 240 (1049)
T KOG0307|consen 181 SPSGRAVIWDLRKKK--------------PIIKLSDTPGRMHCSVLAWHP------DHATQLLVASGDDSAPVIQLWDLR 240 (1049)
T ss_pred CCCCCceeccccCCC--------------cccccccCCCccceeeeeeCC------CCceeeeeecCCCCCceeEeeccc
Confidence 999999999999753 333444433 3578999933 233456666654 379999998
Q ss_pred Cc-ceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCc
Q 021036 166 IQ-ELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQV 244 (318)
Q Consensus 166 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~ 244 (318)
.- ..++.+.. |...|.++.|+ +.|..++++++.|+.|.+| +..+++ .+.++......
T Consensus 241 ~assP~k~~~~--------------H~~GilslsWc----~~D~~lllSsgkD~~ii~w--N~~tgE--vl~~~p~~~nW 298 (1049)
T KOG0307|consen 241 FASSPLKILEG--------------HQRGILSLSWC----PQDPRLLLSSGKDNRIICW--NPNTGE--VLGELPAQGNW 298 (1049)
T ss_pred ccCCchhhhcc--------------cccceeeeccC----CCCchhhhcccCCCCeeEe--cCCCce--EeeecCCCCcc
Confidence 54 34444444 44589999999 3556999999999999999 677776 67788777889
Q ss_pred eeEEEEcCCCC-EEEEecCCCcEEEEEecCCc
Q 021036 245 VTGLAWAFDGC-CLYSCSQDNFVRSWIFHGNS 275 (318)
Q Consensus 245 v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~ 275 (318)
+..+.|.|... .|+.++-||.|.||.+.+..
T Consensus 299 ~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 299 CFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 99999999755 88999999999999997644
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-14 Score=127.54 Aligned_cols=248 Identities=13% Similarity=0.096 Sum_probs=162.7
Q ss_pred ccCcCCCCCccceEEeeCCCceeEeecCCCCC--CCceecchhccccccccceeeeecccccCCCCcccccccCCCCCcc
Q 021036 8 TSNKMKDSNTHPTVAASKSKGNSITKIPSNCC--LPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFS 85 (318)
Q Consensus 8 ~~~~~~~~~~~~~~t~s~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~ 85 (318)
+..++-+.+.+.++.|..+|.|.+||+..+.. ...++.....|++.+.. +.|.... .+.
T Consensus 246 ~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~---vvW~~~~----------------~~~ 306 (555)
T KOG1587|consen 246 TCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTA---VVWLQNE----------------HNT 306 (555)
T ss_pred eEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEE---EEEeccC----------------CCC
Confidence 34566777888899999999999999998776 44555555556666444 7786644 114
Q ss_pred EEEEecCCCcEEEEEccCCccccccccccCCceeEEeeec------cccccEEEEEeeeecCCCCCCCcEEEEEeCCCcE
Q 021036 86 ILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQ------AHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSV 159 (318)
Q Consensus 86 ~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~------~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v 159 (318)
-+++++.||.|..|+++.-.... ...+..... .....+++++|.| .+...|+.|+.+|.|
T Consensus 307 ~f~s~ssDG~i~~W~~~~l~~P~--------e~~~~~~~~~~~~~~~~~~~~t~~~F~~------~~p~~FiVGTe~G~v 372 (555)
T KOG1587|consen 307 EFFSLSSDGSICSWDTDMLSLPV--------EGLLLESKKHKGQQSSKAVGATSLKFEP------TDPNHFIVGTEEGKV 372 (555)
T ss_pred ceEEEecCCcEeeeeccccccch--------hhcccccccccccccccccceeeEeecc------CCCceEEEEcCCcEE
Confidence 57888889999999876422100 000000111 1234678999933 344569999999998
Q ss_pred EEEECCCccee--eeecccccccccceeeeeecccceeEEEEeeccCCCCc-eEEEEEeCCCcEEEeeeccCCCeeeEee
Q 021036 160 RIWDGYIQELQ--KSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRL-MLLAVGKGSGSFDLWKCDISCNKFDKVG 236 (318)
Q Consensus 160 ~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 236 (318)
.--+-...+.. ..++++ .....|.++|+.+.++ |=+ +.|++++ |.++++|.-+... .++.
T Consensus 373 ~~~~r~g~~~~~~~~~~~~--------~~~~~h~g~v~~v~~n-----PF~~k~fls~g-DW~vriWs~~~~~---~Pl~ 435 (555)
T KOG1587|consen 373 YKGCRKGYTPAPEVSYKGH--------STFITHIGPVYAVSRN-----PFYPKNFLSVG-DWTVRIWSEDVIA---SPLL 435 (555)
T ss_pred EEEeccCCccccccccccc--------ccccccCcceEeeecC-----CCccceeeeec-cceeEeccccCCC---Ccch
Confidence 87332222111 111222 1224577799999998 544 4555555 9999999533222 2677
Q ss_pred eeecccCceeEEEEcCCC-CEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 237 SYNAHDQVVTGLAWAFDG-CCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 237 ~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
.+..+...+++++|||-. ..|+++..||.|.+||+............. +....+.+.|+++|+.|++
T Consensus 436 ~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~------------~~~~l~~~~~s~~g~~lav 503 (555)
T KOG1587|consen 436 SLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKV------------CSPALTRVRWSPNGKLLAV 503 (555)
T ss_pred hhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccc------------cccccceeecCCCCcEEEE
Confidence 777788889999999974 488899999999999997644332221111 1236678899999999999
Q ss_pred Ee
Q 021036 316 VQ 317 (318)
Q Consensus 316 ~~ 317 (318)
|.
T Consensus 504 Gd 505 (555)
T KOG1587|consen 504 GD 505 (555)
T ss_pred ec
Confidence 85
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.8e-14 Score=116.47 Aligned_cols=202 Identities=19% Similarity=0.199 Sum_probs=139.0
Q ss_pred ceEEeeCCCceeEeecCCCCCC--CceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCC--C
Q 021036 19 PTVAASKSKGNSITKIPSNCCL--PLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRS--G 94 (318)
Q Consensus 19 ~~~t~s~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~d--g 94 (318)
.++++-.+|.+.+|....+..- +.+.... . ..+. .+.-.|.. ..++|+|+.. .
T Consensus 117 ~Litc~~sG~l~~~~~k~~d~hss~l~~la~--g-~g~~---~~r~~~~~-----------------p~Iva~GGke~~n 173 (412)
T KOG3881|consen 117 TLITCVSSGNLQVRHDKSGDLHSSKLIKLAT--G-PGLY---DVRQTDTD-----------------PYIVATGGKENIN 173 (412)
T ss_pred EEEEEecCCcEEEEeccCCccccccceeeec--C-Ccee---eeccCCCC-----------------CceEecCchhccc
Confidence 3688899999999988754311 1111100 0 0000 12222222 4788889999 8
Q ss_pred cEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCC--CcEEEEEeCCCcEEEEECCCc-ceee
Q 021036 95 KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNP--QVLLVTGSSDGSVRIWDGYIQ-ELQK 171 (318)
Q Consensus 95 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~--~~~l~s~~~d~~v~iwd~~~~-~~~~ 171 (318)
.++|||++..+. +.......+-.+- + .-.-.++++.| -+. ...|++++.-+.|++||.+.+ +++.
T Consensus 174 ~lkiwdle~~~q--iw~aKNvpnD~L~--L-rVPvW~tdi~F-------l~g~~~~~fat~T~~hqvR~YDt~~qRRPV~ 241 (412)
T KOG3881|consen 174 ELKIWDLEQSKQ--IWSAKNVPNDRLG--L-RVPVWITDIRF-------LEGSPNYKFATITRYHQVRLYDTRHQRRPVA 241 (412)
T ss_pred ceeeeeccccee--eeeccCCCCcccc--c-eeeeeecccee-------cCCCCCceEEEEecceeEEEecCcccCccee
Confidence 899999987531 1111110000000 0 01124678888 444 678999999999999999965 4555
Q ss_pred eecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEc
Q 021036 172 SAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWA 251 (318)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 251 (318)
.+...+. +++++... |+++.+++|..-|.+..| |.++++. ....+++..+.|+++..+
T Consensus 242 ~fd~~E~--------------~is~~~l~-----p~gn~Iy~gn~~g~l~~F--D~r~~kl-~g~~~kg~tGsirsih~h 299 (412)
T KOG3881|consen 242 QFDFLEN--------------PISSTGLT-----PSGNFIYTGNTKGQLAKF--DLRGGKL-LGCGLKGITGSIRSIHCH 299 (412)
T ss_pred EeccccC--------------cceeeeec-----CCCcEEEEecccchhhee--cccCcee-eccccCCccCCcceEEEc
Confidence 5554443 88999998 999999999999999999 7777763 344488889999999999
Q ss_pred CCCCEEEEecCCCcEEEEEecCCcee
Q 021036 252 FDGCCLYSCSQDNFVRSWIFHGNSLS 277 (318)
Q Consensus 252 ~~~~~l~s~~~d~~v~iwd~~~~~~~ 277 (318)
|.++++++++.|+.|||+|+.++++.
T Consensus 300 p~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 300 PTHPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred CCCceEEeeccceeEEEeecccchhh
Confidence 99999999999999999999986654
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3e-14 Score=128.35 Aligned_cols=237 Identities=15% Similarity=0.136 Sum_probs=153.1
Q ss_pred CCccceEEeeC-CCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCC
Q 021036 15 SNTHPTVAASK-SKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRS 93 (318)
Q Consensus 15 ~~~~~~~t~s~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~d 93 (318)
....+.+.++. ...|++||.+.++++..+....+... .++.+.+-... +-.++++|+.|
T Consensus 1073 hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t----~Vs~l~liNe~----------------D~aLlLtas~d 1132 (1387)
T KOG1517|consen 1073 HPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDT----RVSDLELINEQ----------------DDALLLTASSD 1132 (1387)
T ss_pred cCCCceeEEcCCcceEEEEecccCceeccccCCCCCCC----ccceeeeeccc----------------chhheeeeccC
Confidence 34444444444 67889999999998776654332111 11212221111 13799999999
Q ss_pred CcEEEEEccCCccccccccccCCceeEEeeeccc-------cccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCC
Q 021036 94 GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAH-------NSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYI 166 (318)
Q Consensus 94 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h-------~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 166 (318)
|.||||+--..... ..+.+..+.+- .+.=.-+.| .....+|++++.-..|+|||...
T Consensus 1133 GvIRIwk~y~~~~~---------~~eLVTaw~~Ls~~~~~~r~~~~v~dW-------qQ~~G~Ll~tGd~r~IRIWDa~~ 1196 (1387)
T KOG1517|consen 1133 GVIRIWKDYADKWK---------KPELVTAWSSLSDQLPGARGTGLVVDW-------QQQSGHLLVTGDVRSIRIWDAHK 1196 (1387)
T ss_pred ceEEEecccccccC---------CceeEEeeccccccCccCCCCCeeeeh-------hhhCCeEEecCCeeEEEEEeccc
Confidence 99999976432100 02333333221 111134677 44445666666678999999998
Q ss_pred cceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCc--
Q 021036 167 QELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQV-- 244 (318)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~-- 244 (318)
.++...+.... ...++++.-+ ...|+.++.|..||.|++||..+...+ ..+...+.|...
T Consensus 1197 E~~~~diP~~s-------------~t~vTaLS~~----~~~gn~i~AGfaDGsvRvyD~R~a~~d-s~v~~~R~h~~~~~ 1258 (1387)
T KOG1517|consen 1197 EQVVADIPYGS-------------STLVTALSAD----LVHGNIIAAGFADGSVRVYDRRMAPPD-SLVCVYREHNDVEP 1258 (1387)
T ss_pred ceeEeecccCC-------------Cccceeeccc----ccCCceEEEeecCCceEEeecccCCcc-ccceeecccCCccc
Confidence 88777665433 2356666665 256899999999999999965444333 256677888877
Q ss_pred eeEEEEcCCCC-EEEEecCCCcEEEEEecCCceee---eecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 245 VTGLAWAFDGC-CLYSCSQDNFVRSWIFHGNSLSQ---VSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 245 v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
|..+.+.+.|- .|++|+.||.|++||++...... +..+.. ..+.++++..+++...+|+|.
T Consensus 1259 Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~------------yGs~lTal~VH~hapiiAsGs 1323 (1387)
T KOG1517|consen 1259 IVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWE------------YGSALTALTVHEHAPIIASGS 1323 (1387)
T ss_pred ceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccc------------cCccceeeeeccCCCeeeecC
Confidence 99999998765 49999999999999999742221 111111 112578999999999999885
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.2e-14 Score=124.09 Aligned_cols=201 Identities=16% Similarity=0.101 Sum_probs=128.2
Q ss_pred CCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCC---CcEEEEEcc
Q 021036 26 SKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRS---GKVSLWRIC 102 (318)
Q Consensus 26 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~d---g~i~iw~~~ 102 (318)
+..+.+||..... .+.+.. +... +....|+|++ +.|+..+.+ ..|++||+.
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~----~~~~---v~~p~wSPDG------------------~~la~~s~~~~~~~i~i~dl~ 236 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNR----SSQP---LMSPAWSPDG------------------SKLAYVSFENKKSQLVVHDLR 236 (429)
T ss_pred eEEEEEECCCCCC-ceEecc----CCCc---cccceEcCCC------------------CEEEEEEecCCCcEEEEEeCC
Confidence 4688888886543 222221 2222 2337788877 777776543 369999998
Q ss_pred CCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEe-CCCcEEEE--ECCCcceeeeecccccc
Q 021036 103 VPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS-SDGSVRIW--DGYIQELQKSAEAHCVP 179 (318)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~-~d~~v~iw--d~~~~~~~~~~~~~~~~ 179 (318)
+++ .+.+..+.+| ...++| +|+|+.|+.++ .+|.+.|| |+.+++.. .+..
T Consensus 237 tg~------------~~~l~~~~g~---~~~~~w-------SPDG~~La~~~~~~g~~~Iy~~d~~~~~~~-~lt~---- 289 (429)
T PRK01742 237 SGA------------RKVVASFRGH---NGAPAF-------SPDGSRLAFASSKDGVLNIYVMGANGGTPS-QLTS---- 289 (429)
T ss_pred CCc------------eEEEecCCCc---cCceeE-------CCCCCEEEEEEecCCcEEEEEEECCCCCeE-eecc----
Confidence 765 2334444444 346899 89999888765 67876655 55554432 2221
Q ss_pred cccceeeeeecccceeEEEEeeccCCCCceEEEEEe-CCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEE
Q 021036 180 FSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK-GSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLY 258 (318)
Q Consensus 180 ~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 258 (318)
+...+....|+ |+|+.|+.++ .+|...+|+++...+.... + .+.. ....|+|+|++|+
T Consensus 290 ----------~~~~~~~~~wS-----pDG~~i~f~s~~~g~~~I~~~~~~~~~~~~---l-~~~~--~~~~~SpDG~~ia 348 (429)
T PRK01742 290 ----------GAGNNTEPSWS-----PDGQSILFTSDRSGSPQVYRMSASGGGASL---V-GGRG--YSAQISADGKTLV 348 (429)
T ss_pred ----------CCCCcCCEEEC-----CCCCEEEEEECCCCCceEEEEECCCCCeEE---e-cCCC--CCccCCCCCCEEE
Confidence 22356678898 9998766554 6788999987765554222 2 2333 4578999999998
Q ss_pred EecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 259 SCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 259 s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
..+.++ +.+||+.++....+.... ...+++|+|||++|+.+.
T Consensus 349 ~~~~~~-i~~~Dl~~g~~~~lt~~~----------------~~~~~~~sPdG~~i~~~s 390 (429)
T PRK01742 349 MINGDN-VVKQDLTSGSTEVLSSTF----------------LDESPSISPNGIMIIYSS 390 (429)
T ss_pred EEcCCC-EEEEECCCCCeEEecCCC----------------CCCCceECCCCCEEEEEE
Confidence 887765 556999887654332111 124678999999988753
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.8e-14 Score=120.19 Aligned_cols=227 Identities=15% Similarity=0.122 Sum_probs=154.4
Q ss_pred CCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEEEEccCC
Q 021036 25 KSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVP 104 (318)
Q Consensus 25 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~ 104 (318)
.+..+.++|.+.|..++++.. |++. +.|++|+.++ +.+|+|+.|..|.+|+-+-.
T Consensus 31 Ag~rlliyD~ndG~llqtLKg----HKDt---VycVAys~dG------------------krFASG~aDK~VI~W~~klE 85 (1081)
T KOG1538|consen 31 AGSRLLVYDTSDGTLLQPLKG----HKDT---VYCVAYAKDG------------------KRFASGSADKSVIIWTSKLE 85 (1081)
T ss_pred cCCEEEEEeCCCccccccccc----ccce---EEEEEEccCC------------------ceeccCCCceeEEEeccccc
Confidence 344688999999988887765 6666 5558888887 99999999999999987643
Q ss_pred ccccccccc------------------------cCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEE
Q 021036 105 KCYSVEDCK------------------------VPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVR 160 (318)
Q Consensus 105 ~~~~~~~~~------------------------~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~ 160 (318)
..+...++. +++..+.+... .....|.+.+| ..+|++|+.|-.||+|.
T Consensus 86 G~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~-kss~R~~~CsW-------tnDGqylalG~~nGTIs 157 (1081)
T KOG1538|consen 86 GILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKH-KSSSRIICCSW-------TNDGQYLALGMFNGTIS 157 (1081)
T ss_pred ceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhh-hhheeEEEeee-------cCCCcEEEEeccCceEE
Confidence 333222211 01111111111 12356788888 88999999999999999
Q ss_pred EEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeec
Q 021036 161 IWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNA 240 (318)
Q Consensus 161 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 240 (318)
+-+-...... .+... .+...+|.+++|++...+...+.+++..+..++.+|.++ . + .+..-+.
T Consensus 158 iRNk~gEek~-~I~Rp-----------gg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls--G-~--~Igk~r~ 220 (1081)
T KOG1538|consen 158 IRNKNGEEKV-KIERP-----------GGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS--G-K--QIGKDRA 220 (1081)
T ss_pred eecCCCCcce-EEeCC-----------CCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec--c-e--eeccccc
Confidence 9865433322 22211 123558999999954443345689999999999998442 2 2 3332333
Q ss_pred ccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 241 HDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 241 h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
-.-...|+.+.++|.+++.|+.|+.+.+|...+-.+-++.- ....|+.|+..|++++++.|
T Consensus 221 L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~GvrLGTvg~---------------~D~WIWtV~~~PNsQ~v~~G 281 (1081)
T KOG1538|consen 221 LNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGVRLGTVGE---------------QDSWIWTVQAKPNSQYVVVG 281 (1081)
T ss_pred CCCCchhheeccCCcEEEEccCCCceEEEeecCeEEeeccc---------------cceeEEEEEEccCCceEEEE
Confidence 34456789999999999999999999999765433333221 12489999999999998876
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-14 Score=121.73 Aligned_cols=170 Identities=15% Similarity=0.080 Sum_probs=119.0
Q ss_pred CcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEE
Q 021036 71 KKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLL 150 (318)
Q Consensus 71 ~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l 150 (318)
|.+++.+-.++++|.-|++.+.||.|+||.... -+..++.....+|+|++| .|+.+.+
T Consensus 103 H~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG---------------MLRStl~Q~~~~v~c~~W-------~p~S~~v 160 (737)
T KOG1524|consen 103 HAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG---------------MLRSTVVQNEESIRCARW-------APNSNSI 160 (737)
T ss_pred hhhhhhhcccCCCCceeeeecCCceEEEEeccc---------------hHHHHHhhcCceeEEEEE-------CCCCCce
Confidence 334444444444449999999999999999763 222344455679999999 5555555
Q ss_pred EEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCC
Q 021036 151 VTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCN 230 (318)
Q Consensus 151 ~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~ 230 (318)
+-+-. +.+.|=.+.....+-.. .+|++-|-++.|+ +..+++++|+.|-..++| |....
T Consensus 161 l~c~g-~h~~IKpL~~n~k~i~W--------------kAHDGiiL~~~W~-----~~s~lI~sgGED~kfKvW--D~~G~ 218 (737)
T KOG1524|consen 161 VFCQG-GHISIKPLAANSKIIRW--------------RAHDGLVLSLSWS-----TQSNIIASGGEDFRFKIW--DAQGA 218 (737)
T ss_pred EEecC-CeEEEeecccccceeEE--------------eccCcEEEEeecC-----ccccceeecCCceeEEee--cccCc
Confidence 54432 34444444322222222 4567789999999 999999999999999999 44433
Q ss_pred eeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCcc
Q 021036 231 KFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQ 289 (318)
Q Consensus 231 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~ 289 (318)
.+..-..|+.+|++++|.|+ +.++.++. .++|+=..+.+....+.+.+++..++
T Consensus 219 ---~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~~~p~~GSifnlsWS~DGTQ~a 272 (737)
T KOG1524|consen 219 ---NLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTARFSSPRVGSIFNLSWSADGTQAT 272 (737)
T ss_pred ---ccccCChhccceeeeeeccc-cceeeeee-eeeeecCCCccceEEEEEcCCCceee
Confidence 45566779999999999999 66666664 47776667778888888888876554
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.8e-15 Score=127.21 Aligned_cols=203 Identities=15% Similarity=0.083 Sum_probs=150.2
Q ss_pred CCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccc----------------------------------c-
Q 021036 68 LSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVED----------------------------------C- 112 (318)
Q Consensus 68 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~----------------------------------~- 112 (318)
..+|.+-|.++.+++.|.+|++|+.||+|+||.+.++.|+.... +
T Consensus 396 yrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~ 475 (733)
T KOG0650|consen 396 YRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGD 475 (733)
T ss_pred EeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccc
Confidence 55899999999999999999999999999999999998753210 0
Q ss_pred -------------cc---CC--------------ceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCC---CcE
Q 021036 113 -------------KV---PT--------------TAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSD---GSV 159 (318)
Q Consensus 113 -------------~~---~~--------------~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d---~~v 159 (318)
.+ .. ...-++....|...|.++.| ...|+||++...+ ..|
T Consensus 476 ~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtW-------HrkGDYlatV~~~~~~~~V 548 (733)
T KOG0650|consen 476 RLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTW-------HRKGDYLATVMPDSGNKSV 548 (733)
T ss_pred hhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeee-------ecCCceEEEeccCCCcceE
Confidence 00 00 00112233457889999999 8999999998764 478
Q ss_pred EEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeee
Q 021036 160 RIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYN 239 (318)
Q Consensus 160 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 239 (318)
.|+++........|.. ..+.+.++.|+ |...+|++++ ...|++|| +..+. .+..+.
T Consensus 549 liHQLSK~~sQ~PF~k--------------skG~vq~v~FH-----Ps~p~lfVaT-q~~vRiYd--L~kqe--lvKkL~ 604 (733)
T KOG0650|consen 549 LIHQLSKRKSQSPFRK--------------SKGLVQRVKFH-----PSKPYLFVAT-QRSVRIYD--LSKQE--LVKKLL 604 (733)
T ss_pred EEEecccccccCchhh--------------cCCceeEEEec-----CCCceEEEEe-ccceEEEe--hhHHH--HHHHHh
Confidence 8888876554433321 23468889999 8888888877 56799995 44444 555666
Q ss_pred cccCceeEEEEcCCCCEEEEecCCCcEEEEEecCC--ceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 240 AHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGN--SLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 240 ~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
.....|..++.+|.|.-|+.|+.|+.+..||+.-. .... ++-|...+++|+|++.-.++|+|
T Consensus 605 tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~---------------lr~H~~avr~Va~H~ryPLfas~ 668 (733)
T KOG0650|consen 605 TGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKT---------------LRLHEKAVRSVAFHKRYPLFASG 668 (733)
T ss_pred cCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHH---------------hhhhhhhhhhhhhccccceeeee
Confidence 66678999999999999999999999999998643 2222 33355688899998888888776
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.7e-15 Score=112.53 Aligned_cols=244 Identities=16% Similarity=0.133 Sum_probs=152.6
Q ss_pred ceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEE
Q 021036 19 PTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSL 98 (318)
Q Consensus 19 ~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i 98 (318)
.+++|..-|.+.+|++++......+... ++.. ++.+.--|. ..|.+-++|+.+.+
T Consensus 27 rL~sg~~~G~V~~w~lqt~r~~~~~r~~---g~~~---it~lq~~p~-------------------d~l~tqgRd~~L~l 81 (323)
T KOG0322|consen 27 RLMSGLSVGIVKMWVLQTERDLPLIRLF---GRLF---ITNLQSIPN-------------------DSLDTQGRDPLLIL 81 (323)
T ss_pred hhhcccccceEEEEEeecCccchhhhhh---ccce---eeceeecCC-------------------cchhhcCCCceEEE
Confidence 3799999999999999998766655421 1111 011222222 35666778888888
Q ss_pred EEccCCccccccc----------------ccc-----------------CC--ceeEEeee----ccccccEEEEEeeee
Q 021036 99 WRICVPKCYSVED----------------CKV-----------------PT--TAVLIGLF----QAHNSWITSISLAVL 139 (318)
Q Consensus 99 w~~~~~~~~~~~~----------------~~~-----------------~~--~~~~~~~~----~~h~~~v~~~~~~p~ 139 (318)
|++..+....+.. .++ .. ....++.. .+..+.+.|..|
T Consensus 82 w~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~--- 158 (323)
T KOG0322|consen 82 WTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDK--- 158 (323)
T ss_pred EEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeec---
Confidence 8876533211100 000 00 00001111 123455666665
Q ss_pred cCCCCCCC--cEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCC
Q 021036 140 SSDSSNPQ--VLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGS 217 (318)
Q Consensus 140 ~~~~~~~~--~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~d 217 (318)
....+ -+|+.|-++|.|.+||+..+...-.++.... .......|..+|.++.+. +.-..=++|+.+
T Consensus 159 ---~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~k----v~~~~ash~qpvlsldya-----s~~~rGisgga~ 226 (323)
T KOG0322|consen 159 ---DHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSK----VESPNASHKQPVLSLDYA-----SSCDRGISGGAD 226 (323)
T ss_pred ---cccccceEEEEEeccCCeEEEEEccCCceeeccccccc----cccchhhccCcceeeeec-----hhhcCCcCCCcc
Confidence 11222 3566677899999999998754433332111 111224567789999998 665666788888
Q ss_pred CcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCc
Q 021036 218 GSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDA 297 (318)
Q Consensus 218 g~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h 297 (318)
..+.+|.++-.++....-.+..-....|..+..-||++.+||++.|+.||+|..++..... -+.-|
T Consensus 227 dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLA--------------VLkyH 292 (323)
T KOG0322|consen 227 DKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLA--------------VLKYH 292 (323)
T ss_pred ccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchh--------------hhhhh
Confidence 8999998776666543333333344568889999999999999999999999998865442 12236
Q ss_pred ceeeeEEEEcCCCcEEEEE
Q 021036 298 FVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 298 ~~~v~~v~~sp~~~~l~~~ 316 (318)
++.|++++|+||...+|.+
T Consensus 293 sagvn~vAfspd~~lmAaa 311 (323)
T KOG0322|consen 293 SAGVNAVAFSPDCELMAAA 311 (323)
T ss_pred hcceeEEEeCCCCchhhhc
Confidence 6799999999998888765
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.8e-13 Score=113.24 Aligned_cols=190 Identities=12% Similarity=0.111 Sum_probs=116.3
Q ss_pred ccEEEEec-CCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEe-CCCcEEE
Q 021036 84 FSILAVGG-RSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS-SDGSVRI 161 (318)
Q Consensus 84 ~~~l~~g~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~-~d~~v~i 161 (318)
+++|++++ .++.|.+|++++.... .+.+..+.+ .....++.+ +++++++++++ .++.|.+
T Consensus 91 g~~l~v~~~~~~~v~v~~~~~~g~~----------~~~~~~~~~-~~~~~~~~~-------~p~g~~l~v~~~~~~~v~v 152 (330)
T PRK11028 91 GRFLFSASYNANCVSVSPLDKDGIP----------VAPIQIIEG-LEGCHSANI-------DPDNRTLWVPCLKEDRIRL 152 (330)
T ss_pred CCEEEEEEcCCCeEEEEEECCCCCC----------CCceeeccC-CCcccEeEe-------CCCCCEEEEeeCCCCEEEE
Confidence 37777665 4889999999743211 112222222 234577888 88888876555 5699999
Q ss_pred EECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeC-CCcEEEeeeccCCCeeeEeeeeec
Q 021036 162 WDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKG-SGSFDLWKCDISCNKFDKVGSYNA 240 (318)
Q Consensus 162 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~ 240 (318)
||+.+...+........ . .........+.|+ |+++++++++. ++.|.+|+++..+++.+.+..+..
T Consensus 153 ~d~~~~g~l~~~~~~~~------~--~~~g~~p~~~~~~-----pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~ 219 (330)
T PRK11028 153 FTLSDDGHLVAQEPAEV------T--TVEGAGPRHMVFH-----PNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDM 219 (330)
T ss_pred EEECCCCcccccCCCce------e--cCCCCCCceEEEC-----CCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEec
Confidence 99976332211000000 0 0011245678999 99999988876 999999987654444444444432
Q ss_pred c------cCceeEEEEcCCCCEEEEec-CCCcEEEEEecCCc-eeee-ecCCCCCCccccccCCCcceeeeEEEEcCCCc
Q 021036 241 H------DQVVTGLAWAFDGCCLYSCS-QDNFVRSWIFHGNS-LSQV-SIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNL 311 (318)
Q Consensus 241 h------~~~v~~~~~~~~~~~l~s~~-~d~~v~iwd~~~~~-~~~~-~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 311 (318)
+ ......+.++|++++++++. .++.|.+|++.... ...+ ...+.. .....++|+|||+
T Consensus 220 ~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-------------~~p~~~~~~~dg~ 286 (330)
T PRK11028 220 MPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE-------------TQPRGFNIDHSGK 286 (330)
T ss_pred CCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-------------ccCCceEECCCCC
Confidence 2 11234688999999888875 47899999996532 1111 111100 1345789999999
Q ss_pred EEEEEe
Q 021036 312 VVAMVQ 317 (318)
Q Consensus 312 ~l~~~~ 317 (318)
+|+++.
T Consensus 287 ~l~va~ 292 (330)
T PRK11028 287 YLIAAG 292 (330)
T ss_pred EEEEEE
Confidence 988764
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.4e-14 Score=111.74 Aligned_cols=208 Identities=12% Similarity=0.022 Sum_probs=141.6
Q ss_pred cCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeec-cccccEEEEEeeeecCCCCCCCcEEEEEeCC
Q 021036 78 NGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQ-AHNSWITSISLAVLSSDSSNPQVLLVTGSSD 156 (318)
Q Consensus 78 ~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d 156 (318)
+.+||+|..|++-+.|..+++|++-............. .+....++ .....|..-+|=|......|+..++++.+.|
T Consensus 55 ckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~--~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~ 132 (406)
T KOG2919|consen 55 CKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLN--FSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD 132 (406)
T ss_pred ceeCCCCceEEeecccCeeeEEecChhhcccCCCCccc--cccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence 34444449999999999999999864221100000000 01111111 1245688888877776667888999999999
Q ss_pred CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEee
Q 021036 157 GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVG 236 (318)
Q Consensus 157 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 236 (318)
.-|++||..+|+....+...... .++ ....+++|+ |||..|+.|. ...|++||+. +.++..++.
T Consensus 133 ~PIh~wdaftG~lraSy~~ydh~----de~-----taAhsL~Fs-----~DGeqlfaGy-krcirvFdt~-RpGr~c~vy 196 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRASYRAYDHQ----DEY-----TAAHSLQFS-----PDGEQLFAGY-KRCIRVFDTS-RPGRDCPVY 196 (406)
T ss_pred CceeeeeccccccccchhhhhhH----Hhh-----hhheeEEec-----CCCCeEeecc-cceEEEeecc-CCCCCCcch
Confidence 99999999999887766543310 011 134688999 9999999886 7889999642 334332333
Q ss_pred eee-----cccCceeEEEEcCC-CCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCC
Q 021036 237 SYN-----AHDQVVTGLAWAFD-GCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGN 310 (318)
Q Consensus 237 ~~~-----~h~~~v~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~ 310 (318)
... +..+.|.+++|+|. ...++.++....+-||.-..+....+ +.+|.+.|+.+.|++||
T Consensus 197 ~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~l--------------lggh~gGvThL~~~edG 262 (406)
T KOG2919|consen 197 TTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQL--------------LGGHGGGVTHLQWCEDG 262 (406)
T ss_pred hhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceee--------------ecccCCCeeeEEeccCc
Confidence 322 23677899999995 55899999999988887666554432 22466799999999999
Q ss_pred cEEEEEe
Q 021036 311 LVVAMVQ 317 (318)
Q Consensus 311 ~~l~~~~ 317 (318)
..|.+|-
T Consensus 263 n~lfsGa 269 (406)
T KOG2919|consen 263 NKLFSGA 269 (406)
T ss_pred Ceecccc
Confidence 9988874
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.8e-14 Score=125.34 Aligned_cols=197 Identities=22% Similarity=0.331 Sum_probs=145.5
Q ss_pred CCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcE
Q 021036 80 SSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSV 159 (318)
Q Consensus 80 ~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v 159 (318)
+|+++++++... +..|.||...+++| +..+.+|..++..+.+.|.. .+-.++.+++.||.|
T Consensus 24 fSnD~k~l~~~~-~~~V~VyS~~Tg~~--------------i~~l~~~~a~l~s~~~~~~~----~~~~~~~~~sl~G~I 84 (792)
T KOG1963|consen 24 FSNDAKFLFLCT-GNFVKVYSTATGEC--------------ITSLEDHTAPLTSVIVLPSS----ENANYLIVCSLDGTI 84 (792)
T ss_pred cccCCcEEEEee-CCEEEEEecchHhh--------------hhhcccccCccceeeecCCC----ccceEEEEEecCccE
Confidence 556667777665 45799999999764 45889999999999995542 223578899999999
Q ss_pred EEEECCCcceeeeecccccccccce-------------------------------------------------------
Q 021036 160 RIWDGYIQELQKSAEAHCVPFSLLK------------------------------------------------------- 184 (318)
Q Consensus 160 ~iwd~~~~~~~~~~~~~~~~~~~~~------------------------------------------------------- 184 (318)
++||...+.+++++..+........
T Consensus 85 ~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~ 164 (792)
T KOG1963|consen 85 RVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPK 164 (792)
T ss_pred EEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCc
Confidence 9999998887765532211000000
Q ss_pred ----------------------------------eeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccC-C
Q 021036 185 ----------------------------------EVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDIS-C 229 (318)
Q Consensus 185 ----------------------------------~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~-~ 229 (318)
.....|...+++.+++ |+++++|+|..||.|.+|. +.. .
T Consensus 165 ~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~s-----pn~~~~Aa~d~dGrI~vw~-d~~~~ 238 (792)
T KOG1963|consen 165 SIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALS-----PNERYLAAGDSDGRILVWR-DFGSS 238 (792)
T ss_pred cEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEec-----cccceEEEeccCCcEEEEe-ccccc
Confidence 0011244557888898 9999999999999999995 443 2
Q ss_pred CeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCC
Q 021036 230 NKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPG 309 (318)
Q Consensus 230 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 309 (318)
..-.....+.-|...|.+++|+++|.+|++|+..|.+.+|.+.+++..-++.- .++|..+.++||
T Consensus 239 ~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRL---------------gs~I~~i~vS~d 303 (792)
T KOG1963|consen 239 DDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRL---------------GSPILHIVVSPD 303 (792)
T ss_pred cccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCccccccc---------------CCeeEEEEEcCC
Confidence 22224456777999999999999999999999999999999998773332222 248999999999
Q ss_pred CcEEEEE
Q 021036 310 NLVVAMV 316 (318)
Q Consensus 310 ~~~l~~~ 316 (318)
+.+.+..
T Consensus 304 s~~~sl~ 310 (792)
T KOG1963|consen 304 SDLYSLV 310 (792)
T ss_pred CCeEEEE
Confidence 9876654
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.1e-14 Score=117.17 Aligned_cols=195 Identities=18% Similarity=0.086 Sum_probs=129.7
Q ss_pred ccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcE
Q 021036 17 THPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKV 96 (318)
Q Consensus 17 ~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i 96 (318)
...+.++..||++|+|+.++...+.... .|..+|.+++||+++++|++-+.| ..
T Consensus 156 gs~latgg~dg~lRv~~~Ps~~t~l~e~-------------------------~~~~eV~DL~FS~dgk~lasig~d-~~ 209 (398)
T KOG0771|consen 156 GSKLATGGTDGTLRVWEWPSMLTILEEI-------------------------AHHAEVKDLDFSPDGKFLASIGAD-SA 209 (398)
T ss_pred CCEeeeccccceEEEEecCcchhhhhhH-------------------------hhcCccccceeCCCCcEEEEecCC-ce
Confidence 3557899999999999988765422222 233455666666666999999999 89
Q ss_pred EEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCC-----cEEEEEeCCCcEEEEECCCcceee
Q 021036 97 SLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQ-----VLLVTGSSDGSVRIWDGYIQELQK 171 (318)
Q Consensus 97 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~-----~~l~s~~~d~~v~iwd~~~~~~~~ 171 (318)
+||+.+++.++.. .+-.........++| ..++ .+++....-+.|+.||+..-+.-.
T Consensus 210 ~VW~~~~g~~~a~------------~t~~~k~~~~~~cRF-------~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~ 270 (398)
T KOG0771|consen 210 RVWSVNTGAALAR------------KTPFSKDEMFSSCRF-------SVDNAQETLRLAASQFPGGGVRLCDISLWSGSN 270 (398)
T ss_pred EEEEeccCchhhh------------cCCcccchhhhhcee-------cccCCCceEEEEEecCCCCceeEEEeeeecccc
Confidence 9999999754310 111122334556666 4444 223333345677777765322111
Q ss_pred eecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEc
Q 021036 172 SAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWA 251 (318)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 251 (318)
.+..... ......|++++++ ++|++++.|+.||.|.++ +....+. ....-+.|...|+.+.|+
T Consensus 271 ~l~~~~~---------~~~~~siSsl~VS-----~dGkf~AlGT~dGsVai~--~~~~lq~-~~~vk~aH~~~VT~ltF~ 333 (398)
T KOG0771|consen 271 FLRLRKK---------IKRFKSISSLAVS-----DDGKFLALGTMDGSVAIY--DAKSLQR-LQYVKEAHLGFVTGLTFS 333 (398)
T ss_pred ccchhhh---------hhccCcceeEEEc-----CCCcEEEEeccCCcEEEE--Eeceeee-eEeehhhheeeeeeEEEc
Confidence 1111100 1112279999999 999999999999999999 4444332 222335799999999999
Q ss_pred CCCCEEEEecCCCcEEEEEecC
Q 021036 252 FDGCCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 252 ~~~~~l~s~~~d~~v~iwd~~~ 273 (318)
|+.+++++.+.|.+..+..+.-
T Consensus 334 Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 334 PDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CCcCcccccccCCceeEEEEee
Confidence 9999999999999999988765
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=5e-14 Score=121.33 Aligned_cols=198 Identities=12% Similarity=0.155 Sum_probs=131.0
Q ss_pred ccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEe
Q 021036 75 VPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS 154 (318)
Q Consensus 75 v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~ 154 (318)
|..+++-|+|..|+.+. +..+.+||.+.| .+++++++|.+.|+|++| +.+|+.+++|+
T Consensus 15 i~d~afkPDGsqL~lAA-g~rlliyD~ndG--------------~llqtLKgHKDtVycVAy-------s~dGkrFASG~ 72 (1081)
T KOG1538|consen 15 INDIAFKPDGTQLILAA-GSRLLVYDTSDG--------------TLLQPLKGHKDTVYCVAY-------AKDGKRFASGS 72 (1081)
T ss_pred hheeEECCCCceEEEec-CCEEEEEeCCCc--------------ccccccccccceEEEEEE-------ccCCceeccCC
Confidence 44444444446655554 347999999985 477899999999999999 99999999999
Q ss_pred CCCcEEEEECCCcceeee---ecccccccccce------------------ee--eeecccceeEEEEeeccCCCCceEE
Q 021036 155 SDGSVRIWDGYIQELQKS---AEAHCVPFSLLK------------------EV--VTVNTVPISVLSLILPVQSPRLMLL 211 (318)
Q Consensus 155 ~d~~v~iwd~~~~~~~~~---~~~~~~~~~~~~------------------~~--~~~~~~~v~~l~~~~~~~~~~~~~l 211 (318)
.|..|.+|.-.-...++- -......|++.. .. .......+.+++|. .||.+|
T Consensus 73 aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWt-----nDGqyl 147 (1081)
T KOG1538|consen 73 ADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWT-----NDGQYL 147 (1081)
T ss_pred CceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeec-----CCCcEE
Confidence 999999998653221110 000111111111 00 11123356777787 899999
Q ss_pred EEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCC-----CEEEEecCCCcEEEEEecCCceeeeecCCCCC
Q 021036 212 AVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDG-----CCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTP 286 (318)
Q Consensus 212 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-----~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~ 286 (318)
+.|-.||+|.+- +........+....+...+|++++|+|.. ..++......++.++.+.+.....-.....
T Consensus 148 alG~~nGTIsiR--Nk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~F-- 223 (1081)
T KOG1538|consen 148 ALGMFNGTISIR--NKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNF-- 223 (1081)
T ss_pred EEeccCceEEee--cCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCC--
Confidence 999999999996 33232222344445678899999999962 378888888999999887644432211111
Q ss_pred CccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 287 GLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 287 ~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
...++++.|+|.|++.|
T Consensus 224 -------------dP~CisYf~NGEy~LiG 240 (1081)
T KOG1538|consen 224 -------------DPCCISYFTNGEYILLG 240 (1081)
T ss_pred -------------CchhheeccCCcEEEEc
Confidence 11577777888877765
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.2e-13 Score=115.27 Aligned_cols=186 Identities=26% Similarity=0.415 Sum_probs=133.1
Q ss_pred eCCCceeEeecCC-CCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecC-CCcEEEEEc
Q 021036 24 SKSKGNSITKIPS-NCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGR-SGKVSLWRI 101 (318)
Q Consensus 24 s~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~-dg~i~iw~~ 101 (318)
..|+.+.+|+... ......+.. |... +..++|+|.+ ..+++++. |+.+++|+.
T Consensus 131 ~~d~~~~~~~~~~~~~~~~~~~~----~~~~---v~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~ 185 (466)
T COG2319 131 SLDGTVKLWDLSTPGKLIRTLEG----HSES---VTSLAFSPDG------------------KLLASGSSLDGTIKLWDL 185 (466)
T ss_pred CCCccEEEEEecCCCeEEEEEec----Cccc---EEEEEECCCC------------------CEEEecCCCCCceEEEEc
Confidence 3488888898876 322222221 2222 1235566655 78888885 999999999
Q ss_pred cCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCc-EEEEEeCCCcEEEEECCCcceee-eecccccc
Q 021036 102 CVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQV-LLVTGSSDGSVRIWDGYIQELQK-SAEAHCVP 179 (318)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~-~~~~~~~~ 179 (318)
..+ ..+..+.+|...|.+++| .+++. .+++++.|+.+++||...+.... .+..+..
T Consensus 186 ~~~--------------~~~~~~~~~~~~v~~~~~-------~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~- 243 (466)
T COG2319 186 RTG--------------KPLSTLAGHTDPVSSLAF-------SPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD- 243 (466)
T ss_pred CCC--------------ceEEeeccCCCceEEEEE-------cCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCc-
Confidence 873 356677789999999999 67776 55555999999999988666665 3444432
Q ss_pred cccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEE
Q 021036 180 FSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYS 259 (318)
Q Consensus 180 ~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 259 (318)
.. ...|+ +++..+++++.|+.+++|+...... .+..+.+|...+.++.|+|++..+++
T Consensus 244 -------------~~-~~~~~-----~~~~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~ 301 (466)
T COG2319 244 -------------SV-VSSFS-----PDGSLLASGSSDGTIRLWDLRSSSS---LLRTLSGHSSSVLSVAFSPDGKLLAS 301 (466)
T ss_pred -------------ce-eEeEC-----CCCCEEEEecCCCcEEEeeecCCCc---EEEEEecCCccEEEEEECCCCCEEEE
Confidence 22 22677 7888888999999999995443332 22333678899999999998888888
Q ss_pred ecCCCcEEEEEecCCceee
Q 021036 260 CSQDNFVRSWIFHGNSLSQ 278 (318)
Q Consensus 260 ~~~d~~v~iwd~~~~~~~~ 278 (318)
++.|+.+.+||........
T Consensus 302 ~~~d~~~~~~~~~~~~~~~ 320 (466)
T COG2319 302 GSSDGTVRLWDLETGKLLS 320 (466)
T ss_pred eeCCCcEEEEEcCCCceEE
Confidence 9999899999887765443
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.6e-13 Score=107.77 Aligned_cols=165 Identities=21% Similarity=0.154 Sum_probs=119.0
Q ss_pred cEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeec
Q 021036 95 KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAE 174 (318)
Q Consensus 95 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 174 (318)
.+++.+++.+. .+..+ ....+|.+++. +.+.|+++-.+. |.|||++..+.++++.
T Consensus 69 ~Lkv~~~Kk~~--------------~ICe~-~fpt~IL~Vrm---------Nr~RLvV~Lee~-IyIydI~~MklLhTI~ 123 (391)
T KOG2110|consen 69 KLKVVHFKKKT--------------TICEI-FFPTSILAVRM---------NRKRLVVCLEES-IYIYDIKDMKLLHTIE 123 (391)
T ss_pred eEEEEEcccCc--------------eEEEE-ecCCceEEEEE---------ccceEEEEEccc-EEEEecccceeehhhh
Confidence 47888887643 22332 23567888888 345677776654 9999999999998876
Q ss_pred ccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe--CCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcC
Q 021036 175 AHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK--GSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAF 252 (318)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 252 (318)
.... +...+.+++.+ +.+.++|--+ ..|.|.+| |..+-+ ++..+..|.+.+.+++|++
T Consensus 124 t~~~-----------n~~gl~AlS~n-----~~n~ylAyp~s~t~GdV~l~--d~~nl~--~v~~I~aH~~~lAalafs~ 183 (391)
T KOG2110|consen 124 TTPP-----------NPKGLCALSPN-----NANCYLAYPGSTTSGDVVLF--DTINLQ--PVNTINAHKGPLAALAFSP 183 (391)
T ss_pred ccCC-----------CccceEeeccC-----CCCceEEecCCCCCceEEEE--Ecccce--eeeEEEecCCceeEEEECC
Confidence 4321 22345555555 5555666533 57899999 444544 7888899999999999999
Q ss_pred CCCEEEEecCCCc-EEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 253 DGCCLYSCSQDNF-VRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 253 ~~~~l~s~~~d~~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
+|.+|||+++.|+ ||+|.+.+++....-.... .-..|++++|+||+++|++.
T Consensus 184 ~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~------------~~~~IySL~Fs~ds~~L~~s 236 (391)
T KOG2110|consen 184 DGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT------------YPVSIYSLSFSPDSQFLAAS 236 (391)
T ss_pred CCCEEEEeccCceEEEEEEcCCccEeeeeeCCc------------eeeEEEEEEECCCCCeEEEe
Confidence 9999999999997 8999998776543221111 12478999999999999875
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-14 Score=121.61 Aligned_cols=178 Identities=13% Similarity=0.103 Sum_probs=125.2
Q ss_pred ccCCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeee-ccccccEEEEEeeeecCCCC
Q 021036 66 LRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLF-QAHNSWITSISLAVLSSDSS 144 (318)
Q Consensus 66 ~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~~ 144 (318)
..+.+|.+.|.+++++.+|.+|++|+.|-.+.|||.-.. +++..+ .+|.+.|.++.|.|..
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~--------------KllhsI~TgHtaNIFsvKFvP~t---- 105 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEY--------------KLLHSISTGHTANIFSVKFVPYT---- 105 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhc--------------ceeeeeecccccceeEEeeeccC----
Confidence 347889999999999999999999999999999999853 344444 6899999999997754
Q ss_pred CCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCc-eEEEEEeCCCcEEEe
Q 021036 145 NPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRL-MLLAVGKGSGSFDLW 223 (318)
Q Consensus 145 ~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~-~~l~~~~~dg~i~vw 223 (318)
+.+++++|..|..|+++|+...+.-..-.+... .......|...|..|+.. |++ ..|.+++.||+|+.|
T Consensus 106 -nnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~----~~~~~~cht~rVKria~~-----p~~PhtfwsasEDGtirQy 175 (758)
T KOG1310|consen 106 -NNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEE----TTRCWSCHTDRVKRIATA-----PNGPHTFWSASEDGTIRQY 175 (758)
T ss_pred -CCeEEEeccCcceEEEEecccccccccccCccc----hhhhhhhhhhhhhheecC-----CCCCceEEEecCCcceeee
Confidence 346899999999999999985322111000000 001123455567777777 666 899999999999999
Q ss_pred eeccCCCeeeE-------eeeeecccCceeEEEEcCC-CCEEEEecCCCcEEEEEec
Q 021036 224 KCDISCNKFDK-------VGSYNAHDQVVTGLAWAFD-GCCLYSCSQDNFVRSWIFH 272 (318)
Q Consensus 224 ~~~~~~~~~~~-------~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~v~iwd~~ 272 (318)
|+.... .+.+ +..+...--...++..+|. ..+|+.|+.|-..++||.+
T Consensus 176 DiREph-~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 176 DIREPH-VCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred cccCCc-cCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 553211 1001 0111111223468889996 5589999999999999954
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.8e-13 Score=105.24 Aligned_cols=117 Identities=24% Similarity=0.366 Sum_probs=87.7
Q ss_pred cccEEEEEeeeecCCCCCCCcEEEEE--eCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCC
Q 021036 128 NSWITSISLAVLSSDSSNPQVLLVTG--SSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQS 205 (318)
Q Consensus 128 ~~~v~~~~~~p~~~~~~~~~~~l~s~--~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 205 (318)
.++|.+++| +|+|+.|++. ..++.|.+||++ ++.+..+. ...++.+.|+
T Consensus 59 ~~~I~~~~W-------sP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~----------------~~~~n~i~ws----- 109 (194)
T PF08662_consen 59 EGPIHDVAW-------SPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG----------------TQPRNTISWS----- 109 (194)
T ss_pred CCceEEEEE-------CcCCCEEEEEEccCCcccEEEcCc-ccEeEeec----------------CCCceEEEEC-----
Confidence 457999999 8898887654 457899999996 44444443 2367889999
Q ss_pred CCceEEEEEeC---CCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecC------CCcEEEEEecCCce
Q 021036 206 PRLMLLAVGKG---SGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQ------DNFVRSWIFHGNSL 276 (318)
Q Consensus 206 ~~~~~l~~~~~---dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~------d~~v~iwd~~~~~~ 276 (318)
|+|+++++++. .|.|.+| |.+..+ .+.+.. |. .++.++|+|+|++|+++.. |..++||+..+..+
T Consensus 110 P~G~~l~~~g~~n~~G~l~~w--d~~~~~--~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l 183 (194)
T PF08662_consen 110 PDGRFLVLAGFGNLNGDLEFW--DVRKKK--KISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLL 183 (194)
T ss_pred CCCCEEEEEEccCCCcEEEEE--ECCCCE--Eeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEe
Confidence 99999999874 4679999 455444 555543 33 4789999999999998864 78899999987665
Q ss_pred eee
Q 021036 277 SQV 279 (318)
Q Consensus 277 ~~~ 279 (318)
...
T Consensus 184 ~~~ 186 (194)
T PF08662_consen 184 YKK 186 (194)
T ss_pred Eec
Confidence 543
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.2e-12 Score=109.65 Aligned_cols=226 Identities=12% Similarity=0.048 Sum_probs=133.2
Q ss_pred eEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEe-cCCCcEEE
Q 021036 20 TVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVG-GRSGKVSL 98 (318)
Q Consensus 20 ~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g-~~dg~i~i 98 (318)
.++...|+.|++||+.+...+..+.. ....+. ...+.++|++ ++|+++ ..++.|.+
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~--~~~~~~---~~~l~~spd~------------------~~lyv~~~~~~~i~~ 61 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQV--VDVPGQ---VQPMVISPDK------------------RHLYVGVRPEFRVLS 61 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeE--EecCCC---CccEEECCCC------------------CEEEEEECCCCcEEE
Confidence 45567899999999975332222221 111111 2226666666 877665 45888999
Q ss_pred EEccC-CccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeC-CCcEEEEECCCc-ceeeeecc
Q 021036 99 WRICV-PKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSS-DGSVRIWDGYIQ-ELQKSAEA 175 (318)
Q Consensus 99 w~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~-d~~v~iwd~~~~-~~~~~~~~ 175 (318)
|+++. +. ........ .......+.+ ++++++|++++. ++.|.+|++... ........
T Consensus 62 ~~~~~~g~------------l~~~~~~~-~~~~p~~i~~-------~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~ 121 (330)
T PRK11028 62 YRIADDGA------------LTFAAESP-LPGSPTHIST-------DHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQI 121 (330)
T ss_pred EEECCCCc------------eEEeeeec-CCCCceEEEE-------CCCCCEEEEEEcCCCeEEEEEECCCCCCCCceee
Confidence 99973 22 11222222 2234567999 899998888775 789999999642 21111110
Q ss_pred cccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe-CCCcEEEeeeccCCCeeeEe----eeeecccCceeEEEE
Q 021036 176 HCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK-GSGSFDLWKCDISCNKFDKV----GSYNAHDQVVTGLAW 250 (318)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~----~~~~~h~~~v~~~~~ 250 (318)
. ........++++ |+++++++++ .++.|.+|+++. .+...+. .... .......+.|
T Consensus 122 ~------------~~~~~~~~~~~~-----p~g~~l~v~~~~~~~v~v~d~~~-~g~l~~~~~~~~~~~-~g~~p~~~~~ 182 (330)
T PRK11028 122 I------------EGLEGCHSANID-----PDNRTLWVPCLKEDRIRLFTLSD-DGHLVAQEPAEVTTV-EGAGPRHMVF 182 (330)
T ss_pred c------------cCCCcccEeEeC-----CCCCEEEEeeCCCCEEEEEEECC-CCcccccCCCceecC-CCCCCceEEE
Confidence 0 011234667888 8988776554 679999997653 2222110 1111 1234578999
Q ss_pred cCCCCEEEEecC-CCcEEEEEecC--Cceee---eecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 251 AFDGCCLYSCSQ-DNFVRSWIFHG--NSLSQ---VSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 251 ~~~~~~l~s~~~-d~~v~iwd~~~--~~~~~---~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
+|+|++++++.. +++|.+|++.. +.... +...+. ... +......+.|+|+|++++++
T Consensus 183 ~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~--------~~~-~~~~~~~i~~~pdg~~lyv~ 245 (330)
T PRK11028 183 HPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPA--------DFS-DTRWAADIHITPDGRHLYAC 245 (330)
T ss_pred CCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCC--------cCC-CCccceeEEECCCCCEEEEe
Confidence 999999887766 89999999973 33221 111111 000 11123468899999988876
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.6e-13 Score=101.25 Aligned_cols=160 Identities=19% Similarity=0.227 Sum_probs=113.2
Q ss_pred ccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEe
Q 021036 75 VPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS 154 (318)
Q Consensus 75 v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~ 154 (318)
|+++-..|..+-++.++.|+.++-||+++| +..+.+++|++.|.++.- ......+++|+
T Consensus 117 INam~ldP~enSi~~AgGD~~~y~~dlE~G--------------~i~r~~rGHtDYvH~vv~-------R~~~~qilsG~ 175 (325)
T KOG0649|consen 117 INAMWLDPSENSILFAGGDGVIYQVDLEDG--------------RIQREYRGHTDYVHSVVG-------RNANGQILSGA 175 (325)
T ss_pred cceeEeccCCCcEEEecCCeEEEEEEecCC--------------EEEEEEcCCcceeeeeee-------cccCcceeecC
Confidence 344444544466666668999999999994 577899999999999987 44555799999
Q ss_pred CCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeE
Q 021036 155 SDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDK 234 (318)
Q Consensus 155 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 234 (318)
.||++++||.+++++++.+.....+-.. .......|.+++.+ ...+++|+ ...+.+| .++..+...
T Consensus 176 EDGtvRvWd~kt~k~v~~ie~yk~~~~l----Rp~~g~wigala~~-------edWlvCGg-Gp~lslw--hLrsse~t~ 241 (325)
T KOG0649|consen 176 EDGTVRVWDTKTQKHVSMIEPYKNPNLL----RPDWGKWIGALAVN-------EDWLVCGG-GPKLSLW--HLRSSESTC 241 (325)
T ss_pred CCccEEEEeccccceeEEeccccChhhc----CcccCceeEEEecc-------CceEEecC-CCceeEE--eccCCCceE
Confidence 9999999999999999988766543211 11123345566554 45666655 6789999 555555334
Q ss_pred eeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCC
Q 021036 235 VGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGN 274 (318)
Q Consensus 235 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 274 (318)
+..+. +.+..+.|..+ .++++++.+.|.-|.+.+-
T Consensus 242 vfpip---a~v~~v~F~~d--~vl~~G~g~~v~~~~l~Gv 276 (325)
T KOG0649|consen 242 VFPIP---ARVHLVDFVDD--CVLIGGEGNHVQSYTLNGV 276 (325)
T ss_pred EEecc---cceeEeeeecc--eEEEeccccceeeeeeccE
Confidence 44444 45566677644 5788888889999988653
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.7e-12 Score=113.27 Aligned_cols=218 Identities=26% Similarity=0.383 Sum_probs=155.5
Q ss_pred ccceEEeeCCCceeEeecCCCC-CCCceecchhccccccccceeeee-cccccCCCCcccccccCCCCCcc-EEEEe-cC
Q 021036 17 THPTVAASKSKGNSITKIPSNC-CLPLITADQYASRSAMLHSLAVAW-SPVLRLSSKKYPVPQNGSSNWFS-ILAVG-GR 92 (318)
Q Consensus 17 ~~~~~t~s~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~w-~p~~~~~~~~~~v~~~~~s~~~~-~l~~g-~~ 92 (318)
...++.++.|+.+.+|+...+. ....+.... . .....+.+ .+.. . +++.. ..
T Consensus 77 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~------------------~~~~~~~~~~ 132 (466)
T COG2319 77 GELLLSGSSDGTIKLWDLDNGEKLIKSLEGLH----D--SSVSKLALSSPDG------------------NSILLASSSL 132 (466)
T ss_pred CcEEEEecCCCcEEEEEcCCCceeEEEEeccC----C--CceeeEEEECCCc------------------ceEEeccCCC
Confidence 3445667789999999998876 322222211 0 01111233 4444 4 45554 44
Q ss_pred CCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeC-CCcEEEEECCCcceee
Q 021036 93 SGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSS-DGSVRIWDGYIQELQK 171 (318)
Q Consensus 93 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~-d~~v~iwd~~~~~~~~ 171 (318)
|+.+++|+.... ......+..|...|..+.| .++++.+++++. |+.+++|++..+....
T Consensus 133 d~~~~~~~~~~~-------------~~~~~~~~~~~~~v~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (466)
T COG2319 133 DGTVKLWDLSTP-------------GKLIRTLEGHSESVTSLAF-------SPDGKLLASGSSLDGTIKLWDLRTGKPLS 192 (466)
T ss_pred CccEEEEEecCC-------------CeEEEEEecCcccEEEEEE-------CCCCCEEEecCCCCCceEEEEcCCCceEE
Confidence 999999999861 2355678899999999999 888888888885 9999999999866666
Q ss_pred eecccccccccceeeeeecccceeEEEEeeccCCCCce-EEEEEeCCCcEEEeeeccCCCeeeEee-eeecccCceeEEE
Q 021036 172 SAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLM-LLAVGKGSGSFDLWKCDISCNKFDKVG-SYNAHDQVVTGLA 249 (318)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~-~~~~h~~~v~~~~ 249 (318)
.+.. |...+.++.++ |++. .+++++.|+.|++| +...+. .+. .+.+|.... ...
T Consensus 193 ~~~~--------------~~~~v~~~~~~-----~~~~~~~~~~~~d~~i~~w--d~~~~~--~~~~~~~~~~~~~-~~~ 248 (466)
T COG2319 193 TLAG--------------HTDPVSSLAFS-----PDGGLLIASGSSDGTIRLW--DLSTGK--LLRSTLSGHSDSV-VSS 248 (466)
T ss_pred eecc--------------CCCceEEEEEc-----CCcceEEEEecCCCcEEEE--ECCCCc--EEeeecCCCCcce-eEe
Confidence 6554 34489999998 8887 55555899999999 444444 444 577777765 348
Q ss_pred EcCCCCEEEEecCCCcEEEEEecCCce-eeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 250 WAFDGCCLYSCSQDNFVRSWIFHGNSL-SQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 250 ~~~~~~~l~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
|+|++.++++++.|+.+++|++..... .... .+|...+.++.|+|++..++++
T Consensus 249 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--------------~~~~~~v~~~~~~~~~~~~~~~ 302 (466)
T COG2319 249 FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL--------------SGHSSSVLSVAFSPDGKLLASG 302 (466)
T ss_pred ECCCCCEEEEecCCCcEEEeeecCCCcEEEEE--------------ecCCccEEEEEECCCCCEEEEe
Confidence 999998899999999999999986554 2111 1244588999999988877764
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-14 Score=120.25 Aligned_cols=184 Identities=15% Similarity=0.140 Sum_probs=140.3
Q ss_pred ceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEE
Q 021036 19 PTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSL 98 (318)
Q Consensus 19 ~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i 98 (318)
.++.|+.-|.+..+|..+++....+.... . +..+.|-... +++|++- ...+.|
T Consensus 143 hlllgGrKGHlAa~Dw~t~~L~~Ei~v~E-----t---v~Dv~~LHne------------------q~~AVAQ-K~y~yv 195 (545)
T KOG1272|consen 143 HLLLGGRKGHLAAFDWVTKKLHFEINVME-----T---VRDVTFLHNE------------------QFFAVAQ-KKYVYV 195 (545)
T ss_pred EEEecCCccceeeeecccceeeeeeehhh-----h---hhhhhhhcch------------------HHHHhhh-hceEEE
Confidence 35677778888888888877655554321 1 1114444444 7887764 567999
Q ss_pred EEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeeccccc
Q 021036 99 WRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCV 178 (318)
Q Consensus 99 w~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~ 178 (318)
||-.. ..+..++.| ..|..+.| -|.--+|++++..|.++--|+..|+.+..+.....
T Consensus 196 YD~~G---------------tElHClk~~-~~v~rLeF-------LPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G 252 (545)
T KOG1272|consen 196 YDNNG---------------TELHCLKRH-IRVARLEF-------LPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAG 252 (545)
T ss_pred ecCCC---------------cEEeehhhc-Cchhhhcc-------cchhheeeecccCCceEEEeechhhhhHHHHccCC
Confidence 99774 345566655 47899999 55556788999999999999999998877654332
Q ss_pred ccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEE
Q 021036 179 PFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLY 258 (318)
Q Consensus 179 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 258 (318)
.+..++-+ |-...+-+|..+|+|.+| .....+ ++..+..|.++|.++++.++|+|++
T Consensus 253 --------------~~~vm~qN-----P~NaVih~GhsnGtVSlW--SP~ske--PLvKiLcH~g~V~siAv~~~G~YMa 309 (545)
T KOG1272|consen 253 --------------RTDVMKQN-----PYNAVIHLGHSNGTVSLW--SPNSKE--PLVKILCHRGPVSSIAVDRGGRYMA 309 (545)
T ss_pred --------------ccchhhcC-----CccceEEEcCCCceEEec--CCCCcc--hHHHHHhcCCCcceEEECCCCcEEe
Confidence 45556666 888899999999999999 555555 7777888999999999999999999
Q ss_pred EecCCCcEEEEEecCCc
Q 021036 259 SCSQDNFVRSWIFHGNS 275 (318)
Q Consensus 259 s~~~d~~v~iwd~~~~~ 275 (318)
|.+.|..++|||++.-.
T Consensus 310 TtG~Dr~~kIWDlR~~~ 326 (545)
T KOG1272|consen 310 TTGLDRKVKIWDLRNFY 326 (545)
T ss_pred ecccccceeEeeecccc
Confidence 99999999999998744
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.7e-13 Score=119.15 Aligned_cols=206 Identities=15% Similarity=0.071 Sum_probs=138.1
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceec-chhcc----ccccccceeeeecccccCCCCcccccccCCCCCccEEEEecC
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITA-DQYAS----RSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGR 92 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~ 92 (318)
+.++++|.||.|..|++..-........ ....+ ......+++++|.|.. .+.++.|+.
T Consensus 306 ~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~-----------------p~~FiVGTe 368 (555)
T KOG1587|consen 306 TEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTD-----------------PNHFIVGTE 368 (555)
T ss_pred CceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCC-----------------CceEEEEcC
Confidence 6699999999999997765433111111 11111 1122334556666655 578999999
Q ss_pred CCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECC-Ccceee
Q 021036 93 SGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGY-IQELQK 171 (318)
Q Consensus 93 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~-~~~~~~ 171 (318)
+|.|.--+....+... ....+.+..+..|.++|+++.++||.. ..|++++ |.+|+||... ....+.
T Consensus 369 ~G~v~~~~r~g~~~~~------~~~~~~~~~~~~h~g~v~~v~~nPF~~------k~fls~g-DW~vriWs~~~~~~Pl~ 435 (555)
T KOG1587|consen 369 EGKVYKGCRKGYTPAP------EVSYKGHSTFITHIGPVYAVSRNPFYP------KNFLSVG-DWTVRIWSEDVIASPLL 435 (555)
T ss_pred CcEEEEEeccCCcccc------cccccccccccccCcceEeeecCCCcc------ceeeeec-cceeEeccccCCCCcch
Confidence 9998864443322100 000123445667899999999955543 2355555 9999999877 444444
Q ss_pred eecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEc
Q 021036 172 SAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWA 251 (318)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 251 (318)
.+..+. ..+++++|+ |-....|+++..+|.+.+||+..+... ++.+...+....+.+.|+
T Consensus 436 ~~~~~~--------------~~v~~vaWS----ptrpavF~~~d~~G~l~iWDLl~~~~~--Pv~s~~~~~~~l~~~~~s 495 (555)
T KOG1587|consen 436 SLDSSP--------------DYVTDVAWS----PTRPAVFATVDGDGNLDIWDLLQDDEE--PVLSQKVCSPALTRVRWS 495 (555)
T ss_pred hhhhcc--------------ceeeeeEEc----CcCceEEEEEcCCCceehhhhhccccC--CcccccccccccceeecC
Confidence 443332 258999999 234679999999999999965544444 777766666677888899
Q ss_pred CCCCEEEEecCCCcEEEEEecC
Q 021036 252 FDGCCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 252 ~~~~~l~s~~~d~~v~iwd~~~ 273 (318)
+.|+.|++|...|++.+|++..
T Consensus 496 ~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 496 PNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred CCCcEEEEecCCCcEEEEEcCc
Confidence 9999999999999999999964
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2e-13 Score=114.74 Aligned_cols=185 Identities=16% Similarity=0.151 Sum_probs=123.4
Q ss_pred CccEEEEecCCCcEEEEEccCCccccccccccCCceeEE-eeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEE
Q 021036 83 WFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLI-GLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRI 161 (318)
Q Consensus 83 ~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~i 161 (318)
.+--|+.|-.-|.|.+.|....+.. ++. ....-....|+|+.|-| .+...|+.+-.+|.+.+
T Consensus 184 ~g~dllIGf~tGqvq~idp~~~~~s-----------klfne~r~i~ktsvT~ikWvp------g~~~~Fl~a~~sGnlyl 246 (636)
T KOG2394|consen 184 KGLDLLIGFTTGQVQLIDPINFEVS-----------KLFNEERLINKSSVTCIKWVP------GSDSLFLVAHASGNLYL 246 (636)
T ss_pred CCcceEEeeccCceEEecchhhHHH-----------HhhhhcccccccceEEEEEEe------CCCceEEEEEecCceEE
Confidence 4456777888888888877642211 000 00011236899999932 23346777778999999
Q ss_pred EECCCccee-----e------eeccccc---cc-ccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeec
Q 021036 162 WDGYIQELQ-----K------SAEAHCV---PF-SLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCD 226 (318)
Q Consensus 162 wd~~~~~~~-----~------~~~~~~~---~~-~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~ 226 (318)
||....... . .+..+.. .- +++.. .......|+..+|+ |||++||+.+.||.++||+++
T Consensus 247 y~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~-w~~~~g~in~f~FS-----~DG~~LA~VSqDGfLRvF~fd 320 (636)
T KOG2394|consen 247 YDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVAR-WHIGEGSINEFAFS-----PDGKYLATVSQDGFLRIFDFD 320 (636)
T ss_pred eeccccccCCCCcccccCCCCeeEEeeeeccccCCccce-eEeccccccceeEc-----CCCceEEEEecCceEEEeecc
Confidence 987421100 0 0110000 00 11111 12234478899999 899999999999999999654
Q ss_pred cCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEE
Q 021036 227 ISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAV 306 (318)
Q Consensus 227 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 306 (318)
+.+ .+..++..-+...|++|+|||++|++|++|.-|.||.+..+.+.. ...+|...|..|+|
T Consensus 321 --t~e--Llg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVA--------------RGqGHkSWVs~VaF 382 (636)
T KOG2394|consen 321 --TQE--LLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVA--------------RGQGHKSWVSVVAF 382 (636)
T ss_pred --HHH--HHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEE--------------eccccccceeeEee
Confidence 433 445556666789999999999999999999999999998777653 34468889999999
Q ss_pred cC
Q 021036 307 SP 308 (318)
Q Consensus 307 sp 308 (318)
.|
T Consensus 383 Dp 384 (636)
T KOG2394|consen 383 DP 384 (636)
T ss_pred cc
Confidence 97
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.3e-12 Score=101.73 Aligned_cols=151 Identities=21% Similarity=0.199 Sum_probs=114.9
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEe--cCC
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVG--GRS 93 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g--~~d 93 (318)
|..+++..-++. |.|+|+.+.+.+..+.... ++... + ++.+|.. .+.+||.- ...
T Consensus 96 Nr~RLvV~Lee~-IyIydI~~MklLhTI~t~~-~n~~g---l--~AlS~n~----------------~n~ylAyp~s~t~ 152 (391)
T KOG2110|consen 96 NRKRLVVCLEES-IYIYDIKDMKLLHTIETTP-PNPKG---L--CALSPNN----------------ANCYLAYPGSTTS 152 (391)
T ss_pred ccceEEEEEccc-EEEEecccceeehhhhccC-CCccc---e--EeeccCC----------------CCceEEecCCCCC
Confidence 455566666665 9999999988888775421 11111 1 3333332 22576653 347
Q ss_pred CcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCc-EEEEECCCcceeee
Q 021036 94 GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGS-VRIWDGYIQELQKS 172 (318)
Q Consensus 94 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~-v~iwd~~~~~~~~~ 172 (318)
|.|.|||..+ .+.+..+..|.+.+.+++| +++|.+|+|+|..|+ ||++.+.+|+.+..
T Consensus 153 GdV~l~d~~n--------------l~~v~~I~aH~~~lAalaf-------s~~G~llATASeKGTVIRVf~v~~G~kl~e 211 (391)
T KOG2110|consen 153 GDVVLFDTIN--------------LQPVNTINAHKGPLAALAF-------SPDGTLLATASEKGTVIRVFSVPEGQKLYE 211 (391)
T ss_pred ceEEEEEccc--------------ceeeeEEEecCCceeEEEE-------CCCCCEEEEeccCceEEEEEEcCCccEeee
Confidence 8999999987 5678889999999999999 999999999999886 68999999999888
Q ss_pred ecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeecc
Q 021036 173 AEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDI 227 (318)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 227 (318)
|.-... ...|++|+|+ |++.+|++.+..++|++|.++.
T Consensus 212 FRRG~~------------~~~IySL~Fs-----~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 212 FRRGTY------------PVSIYSLSFS-----PDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred eeCCce------------eeEEEEEEEC-----CCCCeEEEecCCCeEEEEEecc
Confidence 764443 2278999999 9999999999999999998653
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.8e-12 Score=112.79 Aligned_cols=171 Identities=12% Similarity=0.059 Sum_probs=108.8
Q ss_pred cEEEEecC---CCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEE-EEeCCC--c
Q 021036 85 SILAVGGR---SGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLV-TGSSDG--S 158 (318)
Q Consensus 85 ~~l~~g~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~-s~~~d~--~ 158 (318)
+.|+..+. +..|.+|++.+++. +.+ ....+...++.| +++|+.|+ +.+.++ .
T Consensus 216 ~~la~~s~~~~~~~l~~~dl~~g~~------------~~l---~~~~g~~~~~~~-------SpDG~~l~~~~s~~g~~~ 273 (433)
T PRK04922 216 KKLAYVSFERGRSAIYVQDLATGQR------------ELV---ASFRGINGAPSF-------SPDGRRLALTLSRDGNPE 273 (433)
T ss_pred CEEEEEecCCCCcEEEEEECCCCCE------------EEe---ccCCCCccCceE-------CCCCCEEEEEEeCCCCce
Confidence 77777653 34699999987652 222 223334557899 89998765 455555 5
Q ss_pred EEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe-CCCcEEEeeeccCCCeeeEeee
Q 021036 159 VRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK-GSGSFDLWKCDISCNKFDKVGS 237 (318)
Q Consensus 159 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~ 237 (318)
|.+||+.+++... +..+ .......+|+ |+|+.|+.++ .+|...+|.++..+++.+.+.
T Consensus 274 Iy~~d~~~g~~~~-lt~~--------------~~~~~~~~~s-----pDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt- 332 (433)
T PRK04922 274 IYVMDLGSRQLTR-LTNH--------------FGIDTEPTWA-----PDGKSIYFTSDRGGRPQIYRVAASGGSAERLT- 332 (433)
T ss_pred EEEEECCCCCeEE-CccC--------------CCCccceEEC-----CCCCEEEEEECCCCCceEEEEECCCCCeEEee-
Confidence 9999998776432 2211 1133467888 9998877665 456666666676665533332
Q ss_pred eecccCceeEEEEcCCCCEEEEecCCC---cEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEE
Q 021036 238 YNAHDQVVTGLAWAFDGCCLYSCSQDN---FVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVA 314 (318)
Q Consensus 238 ~~~h~~~v~~~~~~~~~~~l~s~~~d~---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~ 314 (318)
+ +......++|+|+|++|+..+.++ .|.+||+.++....+.... ......|+|||++|+
T Consensus 333 ~--~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~----------------~~~~p~~spdG~~i~ 394 (433)
T PRK04922 333 F--QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGS----------------LDESPSFAPNGSMVL 394 (433)
T ss_pred c--CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCC----------------CCCCceECCCCCEEE
Confidence 2 233445689999999887664432 6999999877665433111 224568999999876
Q ss_pred EE
Q 021036 315 MV 316 (318)
Q Consensus 315 ~~ 316 (318)
..
T Consensus 395 ~~ 396 (433)
T PRK04922 395 YA 396 (433)
T ss_pred EE
Confidence 54
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.4e-13 Score=104.16 Aligned_cols=199 Identities=12% Similarity=0.083 Sum_probs=134.6
Q ss_pred eeccCcCCCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCC-c
Q 021036 6 DFTSNKMKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNW-F 84 (318)
Q Consensus 6 ~~~~~~~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~-~ 84 (318)
++||..+-+.+.+.+.++|-|.+..|||++++..-. +.. .+..|..+|.+++|+.. -
T Consensus 152 PlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~-vkT---------------------QLIAHDKEV~DIaf~~~s~ 209 (364)
T KOG0290|consen 152 PLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGT-VKT---------------------QLIAHDKEVYDIAFLKGSR 209 (364)
T ss_pred cccccccccCCcceeEeecccCeEEEEEEeeccccc-eee---------------------EEEecCcceeEEEeccCcc
Confidence 467777778888999999999999999999872200 110 23334444555555443 4
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCC-CcEEEEE
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSD-GSVRIWD 163 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d-~~v~iwd 163 (318)
+.+|+.+.||+||+||++.-+.- ..+.+-.....+...++| +..+.++++|-..| ..|.|.|
T Consensus 210 ~~FASvgaDGSvRmFDLR~leHS-----------TIIYE~p~~~~pLlRLsw------nkqDpnymATf~~dS~~V~iLD 272 (364)
T KOG0290|consen 210 DVFASVGADGSVRMFDLRSLEHS-----------TIIYEDPSPSTPLLRLSW------NKQDPNYMATFAMDSNKVVILD 272 (364)
T ss_pred ceEEEecCCCcEEEEEecccccc-----------eEEecCCCCCCcceeecc------CcCCchHHhhhhcCCceEEEEE
Confidence 78999999999999999874421 111111122467788899 34555788887766 5799999
Q ss_pred CCCcc-eeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCC--eeeEeeeeec
Q 021036 164 GYIQE-LQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCN--KFDKVGSYNA 240 (318)
Q Consensus 164 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~--~~~~~~~~~~ 240 (318)
++... .+..+.. |.+.|+.++|. |.....+++++.|..+.+||++.--. ...++..+.
T Consensus 273 iR~P~tpva~L~~--------------H~a~VNgIaWa----PhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~- 333 (364)
T KOG0290|consen 273 IRVPCTPVARLRN--------------HQASVNGIAWA----PHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT- 333 (364)
T ss_pred ecCCCcceehhhc--------------CcccccceEec----CCCCceeeecCCcceEEEEecccccccCCCCchhhhh-
Confidence 98643 3344443 55699999999 35578999999999999997643221 111333333
Q ss_pred ccCceeEEEEcCC-CCEEEEecC
Q 021036 241 HDQVVTGLAWAFD-GCCLYSCSQ 262 (318)
Q Consensus 241 h~~~v~~~~~~~~-~~~l~s~~~ 262 (318)
-++.|..+.|++. +.+|+.+..
T Consensus 334 a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 334 AGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred ccceeeeeeecccCCCEEEEEec
Confidence 4567999999974 668877754
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.7e-12 Score=111.00 Aligned_cols=202 Identities=13% Similarity=0.097 Sum_probs=126.8
Q ss_pred ceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEec---CCCcEEEEEccCC
Q 021036 28 GNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGG---RSGKVSLWRICVP 104 (318)
Q Consensus 28 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~---~dg~i~iw~~~~~ 104 (318)
.+.+||...... +.+.. .... .....|+|++ +.|+..+ .+..|.+|++.++
T Consensus 180 ~l~~~d~dg~~~-~~lt~----~~~~---~~~p~wSPDG------------------~~la~~s~~~g~~~i~i~dl~~G 233 (429)
T PRK03629 180 ELRVSDYDGYNQ-FVVHR----SPQP---LMSPAWSPDG------------------SKLAYVTFESGRSALVIQTLANG 233 (429)
T ss_pred eEEEEcCCCCCC-EEeec----CCCc---eeeeEEcCCC------------------CEEEEEEecCCCcEEEEEECCCC
Confidence 566667765433 22221 1222 2337888887 7776543 2457899999876
Q ss_pred ccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEE-eCCC--cEEEEECCCcceeeeecccccccc
Q 021036 105 KCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTG-SSDG--SVRIWDGYIQELQKSAEAHCVPFS 181 (318)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~-~~d~--~v~iwd~~~~~~~~~~~~~~~~~~ 181 (318)
+ .+.+..+.++ +..+.| +|+|+.|+.. +.+| .|.+||+.+++.......
T Consensus 234 ~------------~~~l~~~~~~---~~~~~~-------SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~------ 285 (429)
T PRK03629 234 A------------VRQVASFPRH---NGAPAF-------SPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG------ 285 (429)
T ss_pred C------------eEEccCCCCC---cCCeEE-------CCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCC------
Confidence 5 2333333333 446899 8999888755 4454 588899987765432221
Q ss_pred cceeeeeecccceeEEEEeeccCCCCceEEEEEeC-CCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEe
Q 021036 182 LLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKG-SGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSC 260 (318)
Q Consensus 182 ~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 260 (318)
...+....|+ |+|+.|+..+. ++...+|.++..++..+. +..+........|+|+|++|+..
T Consensus 286 ---------~~~~~~~~wS-----PDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~---lt~~~~~~~~~~~SpDG~~Ia~~ 348 (429)
T PRK03629 286 ---------RSNNTEPTWF-----PDSQNLAYTSDQAGRPQVYKVNINGGAPQR---ITWEGSQNQDADVSSDGKFMVMV 348 (429)
T ss_pred ---------CCCcCceEEC-----CCCCEEEEEeCCCCCceEEEEECCCCCeEE---eecCCCCccCEEECCCCCEEEEE
Confidence 1245677898 99998776664 466777766776665333 23333445678999999988776
Q ss_pred cCC---CcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 261 SQD---NFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 261 ~~d---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
+.+ ..|.+||+.++....+.... ......|+|||++|+..
T Consensus 349 ~~~~g~~~I~~~dl~~g~~~~Lt~~~----------------~~~~p~~SpDG~~i~~~ 391 (429)
T PRK03629 349 SSNGGQQHIAKQDLATGGVQVLTDTF----------------LDETPSIAPNGTMVIYS 391 (429)
T ss_pred EccCCCceEEEEECCCCCeEEeCCCC----------------CCCCceECCCCCEEEEE
Confidence 543 35888999887665443211 12467899999988765
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.5e-12 Score=109.58 Aligned_cols=171 Identities=12% Similarity=0.030 Sum_probs=108.3
Q ss_pred cEEEEecC---CCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEE-EEeCCCc--
Q 021036 85 SILAVGGR---SGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLV-TGSSDGS-- 158 (318)
Q Consensus 85 ~~l~~g~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~-s~~~d~~-- 158 (318)
+.|+..+. +..|.+||+.+++. +.+..+.+.+...+| +|+|+.|+ +.+.++.
T Consensus 214 ~~lay~s~~~g~~~i~~~dl~~g~~---------------~~l~~~~g~~~~~~~-------SPDG~~la~~~~~~g~~~ 271 (435)
T PRK05137 214 QEITYMSYANGRPRVYLLDLETGQR---------------ELVGNFPGMTFAPRF-------SPDGRKVVMSLSQGGNTD 271 (435)
T ss_pred CEEEEEEecCCCCEEEEEECCCCcE---------------EEeecCCCcccCcEE-------CCCCCEEEEEEecCCCce
Confidence 77766543 46899999987642 223345566778899 89998765 5555655
Q ss_pred EEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe-CCCcEEEeeeccCCCeeeEeee
Q 021036 159 VRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK-GSGSFDLWKCDISCNKFDKVGS 237 (318)
Q Consensus 159 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~ 237 (318)
|.+||+.+++... +..+ ........|+ |+|+.++..+ .+|...+|.++..++..+.
T Consensus 272 Iy~~d~~~~~~~~-Lt~~--------------~~~~~~~~~s-----pDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~--- 328 (435)
T PRK05137 272 IYTMDLRSGTTTR-LTDS--------------PAIDTSPSYS-----PDGSQIVFESDRSGSPQLYVMNADGSNPRR--- 328 (435)
T ss_pred EEEEECCCCceEE-ccCC--------------CCccCceeEc-----CCCCEEEEEECCCCCCeEEEEECCCCCeEE---
Confidence 7777887765432 2211 1234567888 9998877766 4454444444665654333
Q ss_pred eecccCceeEEEEcCCCCEEEEecCC---CcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEE
Q 021036 238 YNAHDQVVTGLAWAFDGCCLYSCSQD---NFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVA 314 (318)
Q Consensus 238 ~~~h~~~v~~~~~~~~~~~l~s~~~d---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~ 314 (318)
+..+...+....|+|+|++|+..+.+ ..|.+||+.++....+.. . ..+..++|+|||++|+
T Consensus 329 lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~-~---------------~~~~~p~~spDG~~i~ 392 (435)
T PRK05137 329 ISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTS-G---------------FLVEGPTWAPNGRVIM 392 (435)
T ss_pred eecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccC-C---------------CCCCCCeECCCCCEEE
Confidence 33234456678899999988876543 358888876654433221 1 1346789999999887
Q ss_pred EE
Q 021036 315 MV 316 (318)
Q Consensus 315 ~~ 316 (318)
..
T Consensus 393 ~~ 394 (435)
T PRK05137 393 FF 394 (435)
T ss_pred EE
Confidence 54
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.5e-12 Score=110.65 Aligned_cols=171 Identities=12% Similarity=0.016 Sum_probs=108.9
Q ss_pred cEEEEecCC---CcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEE-EEeCCCcEE
Q 021036 85 SILAVGGRS---GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLV-TGSSDGSVR 160 (318)
Q Consensus 85 ~~l~~g~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~-s~~~d~~v~ 160 (318)
+.|+..+.+ ..|.+||+.+++. ..+ ....+.+....| +|+|+.|+ +.+.++...
T Consensus 208 ~~la~~s~~~~~~~I~~~dl~~g~~------------~~l---~~~~g~~~~~~~-------SPDG~~la~~~~~~g~~~ 265 (427)
T PRK02889 208 TKLAYVSFESKKPVVYVHDLATGRR------------RVV---ANFKGSNSAPAW-------SPDGRTLAVALSRDGNSQ 265 (427)
T ss_pred CEEEEEEccCCCcEEEEEECCCCCE------------EEe---ecCCCCccceEE-------CCCCCEEEEEEccCCCce
Confidence 777766532 3599999987652 222 223345568899 89998776 567788766
Q ss_pred EEEC--CCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe-CCCcEEEeeeccCCCeeeEeee
Q 021036 161 IWDG--YIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK-GSGSFDLWKCDISCNKFDKVGS 237 (318)
Q Consensus 161 iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~ 237 (318)
||.+ .++. ...+..+ ........|+ |||+.|+..+ .+|...+|.++..++..+.+.
T Consensus 266 Iy~~d~~~~~-~~~lt~~--------------~~~~~~~~wS-----pDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt- 324 (427)
T PRK02889 266 IYTVNADGSG-LRRLTQS--------------SGIDTEPFFS-----PDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT- 324 (427)
T ss_pred EEEEECCCCC-cEECCCC--------------CCCCcCeEEc-----CCCCEEEEEecCCCCcEEEEEECCCCceEEEe-
Confidence 6654 3333 2222211 1134456788 9998777655 457788887776665533332
Q ss_pred eecccCceeEEEEcCCCCEEEEecCCC---cEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEE
Q 021036 238 YNAHDQVVTGLAWAFDGCCLYSCSQDN---FVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVA 314 (318)
Q Consensus 238 ~~~h~~~v~~~~~~~~~~~l~s~~~d~---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~ 314 (318)
+. .......+|+|+|++|+..+.++ .|.+||+.++....+.... .....+|+|||++|+
T Consensus 325 ~~--g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~----------------~~~~p~~spdg~~l~ 386 (427)
T PRK02889 325 FT--GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTT----------------RDESPSFAPNGRYIL 386 (427)
T ss_pred cC--CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCC----------------CccCceECCCCCEEE
Confidence 22 23344678999999988776554 6999999887665443211 225679999999887
Q ss_pred EE
Q 021036 315 MV 316 (318)
Q Consensus 315 ~~ 316 (318)
..
T Consensus 387 ~~ 388 (427)
T PRK02889 387 YA 388 (427)
T ss_pred EE
Confidence 64
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.9e-13 Score=107.27 Aligned_cols=216 Identities=14% Similarity=0.134 Sum_probs=141.1
Q ss_pred ccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccc------------cccEEEEEeeeecCC
Q 021036 75 VPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAH------------NSWITSISLAVLSSD 142 (318)
Q Consensus 75 v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h------------~~~v~~~~~~p~~~~ 142 (318)
+.++.|...|.+||+|..+|.|.++.-+..... .......++.| ..+|+.++|++
T Consensus 28 is~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~---------ey~~~t~fqshepEFDYLkSleieEKinkIrw~~---- 94 (433)
T KOG1354|consen 28 ISAVEFDHYGERLATGDKGGRVVLFEREKLYKG---------EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLD---- 94 (433)
T ss_pred eeeEEeecccceEeecCCCCeEEEeeccccccc---------ceeeeeeeeccCcccchhhhhhhhhhhhhceecC----
Confidence 344555555699999999999999976542210 01233334443 34688999932
Q ss_pred CCCCCcEEEEEeCCCcEEEEECCCcceee--------------------eeccccc--ccccceeeeeecccceeEEEEe
Q 021036 143 SSNPQVLLVTGSSDGSVRIWDGYIQELQK--------------------SAEAHCV--PFSLLKEVVTVNTVPISVLSLI 200 (318)
Q Consensus 143 ~~~~~~~l~s~~~d~~v~iwd~~~~~~~~--------------------~~~~~~~--~~~~~~~~~~~~~~~v~~l~~~ 200 (318)
..+...++..+.|.+|++|.+....... .+..+.. ...+.+....+|..-|++++++
T Consensus 95 -~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~N 173 (433)
T KOG1354|consen 95 -DGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVN 173 (433)
T ss_pred -CCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeec
Confidence 2344678888899999999987432211 0001110 1122223456788889999998
Q ss_pred eccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeec-----ccCceeEEEEcCC-CCEEEEecCCCcEEEEEecCC
Q 021036 201 LPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNA-----HDQVVTGLAWAFD-GCCLYSCSQDNFVRSWIFHGN 274 (318)
Q Consensus 201 ~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~-----h~~~v~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~ 274 (318)
.|+..++++. |-.|.+|+++...+.+. +.-.+. -..-|++..|+|. ...++-.+..|+|++.|++..
T Consensus 174 -----sD~Et~lSAD-dLRINLWnlei~d~sFn-IVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~ 246 (433)
T KOG1354|consen 174 -----SDKETFLSAD-DLRINLWNLEIIDQSFN-IVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQS 246 (433)
T ss_pred -----CccceEeecc-ceeeeeccccccCCcee-EEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhh
Confidence 8888888876 89999998888777653 333333 3456889999996 557888889999999999864
Q ss_pred ceee-------eecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 275 SLSQ-------VSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 275 ~~~~-------~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
.+.. .+..+.. ..-+.+--..|..+.|++.|+||++=
T Consensus 247 aLCd~hsKlfEepedp~~-----rsffseiIsSISDvKFs~sGryilsR 290 (433)
T KOG1354|consen 247 ALCDAHSKLFEEPEDPSS-----RSFFSEIISSISDVKFSHSGRYILSR 290 (433)
T ss_pred hhhcchhhhhccccCCcc-----hhhHHHHhhhhhceEEccCCcEEEEe
Confidence 3321 1111111 11123344678999999999999873
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2e-12 Score=103.93 Aligned_cols=183 Identities=14% Similarity=0.155 Sum_probs=117.5
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEEC
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDG 164 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~ 164 (318)
..+|++..|-.|++|+-.... ...++ ......|+|++|-|. .+.-|+.|+. +-|.+|..
T Consensus 111 ~~fava~nddvVriy~ksst~------------pt~Lk--s~sQrnvtclawRPl------saselavgCr-~gIciW~~ 169 (445)
T KOG2139|consen 111 IAFAVATNDDVVRIYDKSSTC------------PTKLK--SVSQRNVTCLAWRPL------SASELAVGCR-AGICIWSD 169 (445)
T ss_pred hhhhhhccCcEEEEeccCCCC------------Cceec--chhhcceeEEEeccC------Ccceeeeeec-ceeEEEEc
Confidence 788999999999999987632 11111 123567999999322 2345777765 56899987
Q ss_pred CCcceeee-ecc-cccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe-CCCcEEEeeeccCCCeeeEeeeeecc
Q 021036 165 YIQELQKS-AEA-HCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK-GSGSFDLWKCDISCNKFDKVGSYNAH 241 (318)
Q Consensus 165 ~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~h 241 (318)
...-.... +.. ...+.. -.......+|++++|. +||..+++++ .|..|.+||. .++...++.. ..
T Consensus 170 s~tln~~r~~~~~s~~~~q---vl~~pgh~pVtsmqwn-----~dgt~l~tAS~gsssi~iWdp--dtg~~~pL~~--~g 237 (445)
T KOG2139|consen 170 SRTLNANRNIRMMSTHHLQ---VLQDPGHNPVTSMQWN-----EDGTILVTASFGSSSIMIWDP--DTGQKIPLIP--KG 237 (445)
T ss_pred Ccccccccccccccccchh---heeCCCCceeeEEEEc-----CCCCEEeecccCcceEEEEcC--CCCCcccccc--cC
Confidence 53211111 000 000000 1111223589999999 9999999988 5778999954 4554335442 23
Q ss_pred cCceeEEEEcCCCCEEEEecCCCcEEEEEecC-CceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 242 DQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHG-NSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 242 ~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
.+.++-+.|||||.+|+++.-|+..++|+... -....-...+ +.|....|+|+|++|+-
T Consensus 238 lgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgs---------------grvqtacWspcGsfLLf 297 (445)
T KOG2139|consen 238 LGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGS---------------GRVQTACWSPCGSFLLF 297 (445)
T ss_pred CCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccC---------------CceeeeeecCCCCEEEE
Confidence 46688899999999999999999999996543 1122111111 37889999999987654
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.9e-12 Score=104.06 Aligned_cols=155 Identities=10% Similarity=0.022 Sum_probs=104.9
Q ss_pred ccceEEeeCCCceeEeecCCC---CCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCC
Q 021036 17 THPTVAASKSKGNSITKIPSN---CCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRS 93 (318)
Q Consensus 17 ~~~~~t~s~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~d 93 (318)
..-+++|+.|..+++|.++.. +..+.|......|+.. +.|++|+... .+|++|..+
T Consensus 68 ~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SN---IF~L~F~~~N------------------~~~~SG~~~ 126 (609)
T KOG4227|consen 68 DRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSN---IFSLEFDLEN------------------RFLYSGERW 126 (609)
T ss_pred CeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccc---eEEEEEccCC------------------eeEecCCCc
Confidence 455789999999999988762 2223344434344443 4446666555 999999999
Q ss_pred CcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeee
Q 021036 94 GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSA 173 (318)
Q Consensus 94 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 173 (318)
++|.+.|+++.+.+ .+..-....+.|+.+.. +|-.+.|++.+.++.|.+||.+..+....+
T Consensus 127 ~~VI~HDiEt~qsi------------~V~~~~~~~~~VY~m~~-------~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~ 187 (609)
T KOG4227|consen 127 GTVIKHDIETKQSI------------YVANENNNRGDVYHMDQ-------HPTDNTLIVVTRAKLVSFIDNRDRQNPISL 187 (609)
T ss_pred ceeEeeecccceee------------eeecccCcccceeeccc-------CCCCceEEEEecCceEEEEeccCCCCCCce
Confidence 99999999985421 11111223458999999 677789999999999999999865421111
Q ss_pred cccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeec
Q 021036 174 EAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCD 226 (318)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~ 226 (318)
... .-.....+.+.|+ |....+|++.+..+-+.+||..
T Consensus 188 ~~~-----------AN~~~~F~t~~F~----P~~P~Li~~~~~~~G~~~~D~R 225 (609)
T KOG4227|consen 188 VLP-----------ANSGKNFYTAEFH----PETPALILVNSETGGPNVFDRR 225 (609)
T ss_pred eee-----------cCCCccceeeeec----CCCceeEEeccccCCCCceeec
Confidence 000 0011245666777 4567899999999999999754
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.2e-13 Score=114.92 Aligned_cols=167 Identities=19% Similarity=0.281 Sum_probs=121.4
Q ss_pred EeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEe
Q 021036 121 IGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLI 200 (318)
Q Consensus 121 ~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 200 (318)
.+.+.+|++-|+|+.| +.+|.+|++|+.|-.+.|||....+.++.+. ++|...|.++.|-
T Consensus 43 E~eL~GH~GCVN~LeW-------n~dG~lL~SGSDD~r~ivWd~~~~KllhsI~-------------TgHtaNIFsvKFv 102 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEW-------NADGELLASGSDDTRLIVWDPFEYKLLHSIS-------------TGHTANIFSVKFV 102 (758)
T ss_pred hhhhccccceecceee-------cCCCCEEeecCCcceEEeecchhcceeeeee-------------cccccceeEEeee
Confidence 3578899999999999 9999999999999999999998777776654 5677799999998
Q ss_pred eccCCCCceEEEEEeCCCcEEEeeeccCCC------eeeEeeeeecccCceeEEEEcCCC-CEEEEecCCCcEEEEEecC
Q 021036 201 LPVQSPRLMLLAVGKGSGSFDLWKCDISCN------KFDKVGSYNAHDQVVTGLAWAFDG-CCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 201 ~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~------~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~ 273 (318)
+. .+..++++|..|..|++||++...+ ..+....+..|...|-.++-.|++ +.+.++++||+++-+|++.
T Consensus 103 P~---tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 103 PY---TNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred cc---CCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence 21 1357899999999999997763221 112344456788889999999988 6899999999999999986
Q ss_pred Ccee--eeecCCCCCCccccccCCCcceeeeEEEEcC-CCcEEEEE
Q 021036 274 NSLS--QVSIPTNTPGLQSCTDLPDAFVSCLGMAVSP-GNLVVAMV 316 (318)
Q Consensus 274 ~~~~--~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~~~ 316 (318)
.... ....+.. ....-...-...++..+| +..+||+|
T Consensus 180 ph~c~p~~~~~~~------l~ny~~~lielk~ltisp~rp~~laVG 219 (758)
T KOG1310|consen 180 PHVCNPDEDCPSI------LVNYNPQLIELKCLTISPSRPYYLAVG 219 (758)
T ss_pred CccCCccccccHH------HHHhchhhheeeeeeecCCCCceEEec
Confidence 2221 1000000 000001123567899999 45567766
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.6e-12 Score=97.22 Aligned_cols=99 Identities=17% Similarity=0.193 Sum_probs=74.3
Q ss_pred ccceeEEEEeeccCCCCceEEEEE--eCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecC---CCc
Q 021036 191 TVPISVLSLILPVQSPRLMLLAVG--KGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQ---DNF 265 (318)
Q Consensus 191 ~~~v~~l~~~~~~~~~~~~~l~~~--~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~---d~~ 265 (318)
..+|.+++|+ |+|+.|++. ..+..|.+|| .+ . +++..+. ...+..+.|+|+|++|++++. .|.
T Consensus 59 ~~~I~~~~Ws-----P~g~~favi~g~~~~~v~lyd--~~-~--~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~ 126 (194)
T PF08662_consen 59 EGPIHDVAWS-----PNGNEFAVIYGSMPAKVTLYD--VK-G--KKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGD 126 (194)
T ss_pred CCceEEEEEC-----cCCCEEEEEEccCCcccEEEc--Cc-c--cEeEeec--CCCceEEEECCCCCEEEEEEccCCCcE
Confidence 3479999999 999887654 4677999995 43 2 2555553 456788999999999998864 467
Q ss_pred EEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 266 VRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 266 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
|.+||+++.+......+. .+..++|+|||++++++.
T Consensus 127 l~~wd~~~~~~i~~~~~~----------------~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 127 LEFWDVRKKKKISTFEHS----------------DATDVEWSPDGRYLATAT 162 (194)
T ss_pred EEEEECCCCEEeeccccC----------------cEEEEEEcCCCCEEEEEE
Confidence 999999965554332222 468999999999999863
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1e-11 Score=110.28 Aligned_cols=201 Identities=17% Similarity=0.181 Sum_probs=142.9
Q ss_pred CcccccccCCCCCccEEEEecCCCcEEEEEccC--CccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCc
Q 021036 71 KKYPVPQNGSSNWFSILAVGGRSGKVSLWRICV--PKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQV 148 (318)
Q Consensus 71 ~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~ 148 (318)
|...+++.+++|.++++|+|..||.|.+|.--. +. ....+.+..|.++|.+++| +.+|.
T Consensus 204 Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~------------~~t~t~lHWH~~~V~~L~f-------S~~G~ 264 (792)
T KOG1963|consen 204 HTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDD------------SETCTLLHWHHDEVNSLSF-------SSDGA 264 (792)
T ss_pred hcccceeEEeccccceEEEeccCCcEEEEeccccccc------------cccceEEEecccccceeEE-------ecCCc
Confidence 445566677777779999999999999997543 22 2234567889999999999 99999
Q ss_pred EEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccC
Q 021036 149 LLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDIS 228 (318)
Q Consensus 149 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~ 228 (318)
+|++|+..|.+.+|.+.+++ +.+-.. -.++|..+.++ ||+.+.+....|+.|.+-. +.
T Consensus 265 ~LlSGG~E~VLv~Wq~~T~~--kqfLPR-------------Lgs~I~~i~vS-----~ds~~~sl~~~DNqI~li~--~~ 322 (792)
T KOG1963|consen 265 YLLSGGREGVLVLWQLETGK--KQFLPR-------------LGSPILHIVVS-----PDSDLYSLVLEDNQIHLIK--AS 322 (792)
T ss_pred eEeecccceEEEEEeecCCC--cccccc-------------cCCeeEEEEEc-----CCCCeEEEEecCceEEEEe--cc
Confidence 99999999999999999887 222211 13489999999 9999999999999999973 32
Q ss_pred CCee-eEeeeee--------cccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCcee-eeecCCCCCCccccccCC-Cc
Q 021036 229 CNKF-DKVGSYN--------AHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLS-QVSIPTNTPGLQSCTDLP-DA 297 (318)
Q Consensus 229 ~~~~-~~~~~~~--------~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~-~h 297 (318)
+... ..+..+. ...+-.+.++++|.-+.++-.+..|.|.+||+.+.... .+....... .+.. .+
T Consensus 323 dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~-----~~~~~n~ 397 (792)
T KOG1963|consen 323 DLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENY-----SDGDVNI 397 (792)
T ss_pred chhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecc-----cCCccee
Confidence 2110 0111111 12345677899997777888889999999999874433 221111100 0111 35
Q ss_pred ceeeeEEEEcCCCcEEEEEe
Q 021036 298 FVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 298 ~~~v~~v~~sp~~~~l~~~~ 317 (318)
.-.++.++.+-.|.+++|+-
T Consensus 398 ~v~itav~~~~~gs~maT~E 417 (792)
T KOG1963|consen 398 QVGITAVARSRFGSWMATLE 417 (792)
T ss_pred EEeeeeehhhccceEEEEee
Confidence 56788888888899999874
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.5e-11 Score=112.83 Aligned_cols=217 Identities=15% Similarity=0.135 Sum_probs=143.1
Q ss_pred CCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCC
Q 021036 15 SNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSG 94 (318)
Q Consensus 15 ~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg 94 (318)
..+..++|||.||+|++||...-.... .. .+. .+.|+|.+ ..+.++.....++.+|.++.||
T Consensus 1059 ~~~s~FvsgS~DGtVKvW~~~k~~~~~-~s-----~rS------~ltys~~~------sr~~~vt~~~~~~~~Av~t~DG 1120 (1431)
T KOG1240|consen 1059 EHTSLFVSGSDDGTVKVWNLRKLEGEG-GS-----ARS------ELTYSPEG------SRVEKVTMCGNGDQFAVSTKDG 1120 (1431)
T ss_pred CCCceEEEecCCceEEEeeehhhhcCc-ce-----eee------eEEEeccC------CceEEEEeccCCCeEEEEcCCC
Confidence 334567999999999999987632211 11 111 26777766 6677777777789999999999
Q ss_pred cEEEEEccCCccccccccccCCceeEEeeecccc-c-cEEEEEeeeecCCCCCCCc-EEEEEeCCCcEEEEECCCcceee
Q 021036 95 KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHN-S-WITSISLAVLSSDSSNPQV-LLVTGSSDGSVRIWDGYIQELQK 171 (318)
Q Consensus 95 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~-~v~~~~~~p~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~ 171 (318)
.|++.+++..+... ......+....+. + .|..-+| ....+. .|+.+..-+.|..||++.....+
T Consensus 1121 ~v~~~~id~~~~~~-------~~~~~~ri~n~~~~g~vv~m~a~------~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w 1187 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNVSK-------RVATQVRIPNLKKDGVVVSMHAF------TAIVQSHVLVYATDLSRIVSWDTRMRHDAW 1187 (1431)
T ss_pred eEEEEEcccccccc-------ceeeeeecccccCCCceEEeecc------cccccceeEEEEEeccceEEecchhhhhHH
Confidence 99999997621100 0012222222222 2 2333333 122333 78888888999999999877666
Q ss_pred eecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeee-cccCceeEEEE
Q 021036 172 SAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYN-AHDQVVTGLAW 250 (318)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-~h~~~v~~~~~ 250 (318)
.++... ..+.|++++.+ |.+..+++|+..|.+.+||+. -+. ++.++. .+..+|..+..
T Consensus 1188 ~lk~~~------------~hG~vTSi~id-----p~~~WlviGts~G~l~lWDLR--F~~--~i~sw~~P~~~~i~~v~~ 1246 (1431)
T KOG1240|consen 1188 RLKNQL------------RHGLVTSIVID-----PWCNWLVIGTSRGQLVLWDLR--FRV--PILSWEHPARAPIRHVWL 1246 (1431)
T ss_pred hhhcCc------------cccceeEEEec-----CCceEEEEecCCceEEEEEee--cCc--eeecccCcccCCcceEEe
Confidence 554332 23479999999 999999999999999999554 444 444443 24477888877
Q ss_pred cCC---CCEEEEec--CCCcEEEEEecCCceeeeecCC
Q 021036 251 AFD---GCCLYSCS--QDNFVRSWIFHGNSLSQVSIPT 283 (318)
Q Consensus 251 ~~~---~~~l~s~~--~d~~v~iwd~~~~~~~~~~~~~ 283 (318)
+|- ....++++ ..+.|.+|++.++.....-+..
T Consensus 1247 ~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s 1284 (1431)
T KOG1240|consen 1247 CPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWAS 1284 (1431)
T ss_pred eccCCCCceEEEecccCCCceeeeecccCcceEEEEcC
Confidence 774 24555444 5788999999988666554444
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.6e-11 Score=94.67 Aligned_cols=167 Identities=20% Similarity=0.190 Sum_probs=113.0
Q ss_pred CcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECC-Ccceeee
Q 021036 94 GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGY-IQELQKS 172 (318)
Q Consensus 94 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~-~~~~~~~ 172 (318)
..|.|||-.. .+.+.++. ...+|.++.+ .. +.|++.- .+.|.+|... +.+.+..
T Consensus 75 NkviIWDD~k--------------~~~i~el~-f~~~I~~V~l-------~r--~riVvvl-~~~I~VytF~~n~k~l~~ 129 (346)
T KOG2111|consen 75 NKVIIWDDLK--------------ERCIIELS-FNSEIKAVKL-------RR--DRIVVVL-ENKIYVYTFPDNPKLLHV 129 (346)
T ss_pred ceEEEEeccc--------------CcEEEEEE-eccceeeEEE-------cC--CeEEEEe-cCeEEEEEcCCChhheee
Confidence 4699999543 23444443 4678999999 44 3455554 5799999987 4566665
Q ss_pred ecccccccccceeeeeecccceeEEEEeeccCCCCceEEEE-EeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEc
Q 021036 173 AEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAV-GKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWA 251 (318)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~-~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 251 (318)
+.....| ..+.+++-. .+..+||. |-.-|.|++-+ +...+..+.....+|...|.+++.+
T Consensus 130 ~et~~NP------------kGlC~~~~~-----~~k~~LafPg~k~GqvQi~d--L~~~~~~~p~~I~AH~s~Iacv~Ln 190 (346)
T KOG2111|consen 130 IETRSNP------------KGLCSLCPT-----SNKSLLAFPGFKTGQVQIVD--LASTKPNAPSIINAHDSDIACVALN 190 (346)
T ss_pred eecccCC------------CceEeecCC-----CCceEEEcCCCccceEEEEE--hhhcCcCCceEEEcccCceeEEEEc
Confidence 5543321 133333322 22333333 45779999984 4443322335678899999999999
Q ss_pred CCCCEEEEecCCCc-EEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 252 FDGCCLYSCSQDNF-VRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 252 ~~~~~l~s~~~d~~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
-+|.++||+|..|+ |||||..++.....-.... ....|++++|||++++||+.
T Consensus 191 ~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~------------d~A~iy~iaFSp~~s~Lavs 244 (346)
T KOG2111|consen 191 LQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV------------DRADIYCIAFSPNSSWLAVS 244 (346)
T ss_pred CCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC------------chheEEEEEeCCCccEEEEE
Confidence 99999999999998 9999999887654322221 12589999999999999976
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.5e-11 Score=98.62 Aligned_cols=190 Identities=15% Similarity=0.148 Sum_probs=136.0
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCC--CcEEEE
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSD--GSVRIW 162 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d--~~v~iw 162 (318)
..|++|-.+|.+.+|..+.+... ...+..+..+ ..+..+.- +......+++|+.. ..+++|
T Consensus 116 g~Litc~~sG~l~~~~~k~~d~h----------ss~l~~la~g-~g~~~~r~------~~~~p~Iva~GGke~~n~lkiw 178 (412)
T KOG3881|consen 116 GTLITCVSSGNLQVRHDKSGDLH----------SSKLIKLATG-PGLYDVRQ------TDTDPYIVATGGKENINELKIW 178 (412)
T ss_pred CEEEEEecCCcEEEEeccCCccc----------cccceeeecC-Cceeeecc------CCCCCceEecCchhcccceeee
Confidence 57888899999999999865422 1222333333 44555655 23334567779888 899999
Q ss_pred ECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCC--ceEEEEEeCCCcEEEeeeccCCCeeeEeeeeec
Q 021036 163 DGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPR--LMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNA 240 (318)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~--~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 240 (318)
|+++.+.+..-+ ..+-..+.-. -.-.++++.|- +. ...|++++.-+.+++| |.+.++ +++..+.-
T Consensus 179 dle~~~qiw~aK--NvpnD~L~Lr---VPvW~tdi~Fl-----~g~~~~~fat~T~~hqvR~Y--Dt~~qR-RPV~~fd~ 245 (412)
T KOG3881|consen 179 DLEQSKQIWSAK--NVPNDRLGLR---VPVWITDIRFL-----EGSPNYKFATITRYHQVRLY--DTRHQR-RPVAQFDF 245 (412)
T ss_pred ecccceeeeecc--CCCCccccce---eeeeeccceec-----CCCCCceEEEEecceeEEEe--cCcccC-cceeEecc
Confidence 999875444322 1111111100 01256677787 55 7899999999999999 565544 48888887
Q ss_pred ccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 241 HDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 241 h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
-+.+++++...|.++++++|..-|.+..||++++.+.... +.+..+.++++..+|.++++|++.
T Consensus 246 ~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~-------------~kg~tGsirsih~hp~~~~las~G 309 (412)
T KOG3881|consen 246 LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCG-------------LKGITGSIRSIHCHPTHPVLASCG 309 (412)
T ss_pred ccCcceeeeecCCCcEEEEecccchhheecccCceeeccc-------------cCCccCCcceEEEcCCCceEEeec
Confidence 8899999999999999999999999999999998876432 333456899999999999999975
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.6e-12 Score=114.13 Aligned_cols=197 Identities=13% Similarity=0.107 Sum_probs=128.6
Q ss_pred eeeccccc----CCCCcccccccCCCCCc-cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEE
Q 021036 60 VAWSPVLR----LSSKKYPVPQNGSSNWF-SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSI 134 (318)
Q Consensus 60 ~~w~p~~~----~~~~~~~v~~~~~s~~~-~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 134 (318)
.-|+|.|. +..|...|..++.+++. .++++|+.||+|++|+...-... ....+...++.....++.++
T Consensus 1032 ~gW~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~-------~~s~rS~ltys~~~sr~~~v 1104 (1431)
T KOG1240|consen 1032 PGWNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE-------GGSARSELTYSPEGSRVEKV 1104 (1431)
T ss_pred CCCCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcC-------cceeeeeEEEeccCCceEEE
Confidence 45888775 55677789899888875 99999999999999999752210 00122333444456788888
Q ss_pred EeeeecCCCCCCCcEEEEEeCCCcEEEEECCCc--ceeeeecccccccccceeeeeecccceeEEEEeeccCCCCce-EE
Q 021036 135 SLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQ--ELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLM-LL 211 (318)
Q Consensus 135 ~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~-~l 211 (318)
.. ..+++.++.++.||.|++.+++.. +.......... -....+..+...++.. ..+. .+
T Consensus 1105 t~-------~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~-------n~~~~g~vv~m~a~~~----~~~S~~l 1166 (1431)
T KOG1240|consen 1105 TM-------CGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIP-------NLKKDGVVVSMHAFTA----IVQSHVL 1166 (1431)
T ss_pred Ee-------ccCCCeEEEEcCCCeEEEEEccccccccceeeeeecc-------cccCCCceEEeecccc----cccceeE
Confidence 88 788999999999999999998862 11110000000 0000111233333331 2333 78
Q ss_pred EEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCC
Q 021036 212 AVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPT 283 (318)
Q Consensus 212 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 283 (318)
+.+...+.|..||..+...-+.. ......+.|++++.+|.+.+++.|...|.+-+||++-+....-..++
T Consensus 1167 vy~T~~~~iv~~D~r~~~~~w~l--k~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P 1236 (1431)
T KOG1240|consen 1167 VYATDLSRIVSWDTRMRHDAWRL--KNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHP 1236 (1431)
T ss_pred EEEEeccceEEecchhhhhHHhh--hcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCc
Confidence 88888999999954333222211 12224578999999999999999999999999999977665433333
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.5e-11 Score=104.75 Aligned_cols=184 Identities=13% Similarity=0.096 Sum_probs=137.3
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCC--------------CCCCCcE
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSD--------------SSNPQVL 149 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~--------------~~~~~~~ 149 (318)
..++|....||.++||+...++..+ .......-++...+..|. .... .+.+...
T Consensus 5 ~~~~A~~~~~g~l~iw~t~~~~~~~-----------e~~p~~~~s~t~~~~~w~-L~~~~s~~k~~~~~~~~~~s~~t~~ 72 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDTAKNQLQQ-----------EFAPIASLSGTCTYTKWG-LSADYSPMKWLSLEKAKKASLDTSM 72 (541)
T ss_pred hheEeecCCCCeEEEEEccCceeee-----------eeccchhccCcceeEEEE-EEeccchHHHHhHHHHhhccCCceE
Confidence 4799999999999999999865321 111111123344445553 1111 1234567
Q ss_pred EEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCC
Q 021036 150 LVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISC 229 (318)
Q Consensus 150 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~ 229 (318)
++-|...|.|.+|++..++.-..+.. ..|.+.|.++.++ .+-..|.+++.|+.+..| +...
T Consensus 73 lvlgt~~g~v~~ys~~~g~it~~~st------------~~h~~~v~~~~~~-----~~~~ciyS~~ad~~v~~~--~~~~ 133 (541)
T KOG4547|consen 73 LVLGTPQGSVLLYSVAGGEITAKLST------------DKHYGNVNEILDA-----QRLGCIYSVGADLKVVYI--LEKE 133 (541)
T ss_pred EEeecCCccEEEEEecCCeEEEEEec------------CCCCCcceeeecc-----cccCceEecCCceeEEEE--eccc
Confidence 88899999999999999887766543 2356689999988 788899999999999999 5555
Q ss_pred CeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCC
Q 021036 230 NKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPG 309 (318)
Q Consensus 230 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 309 (318)
.. .+..+++....+.+++.+|||..+++++ ++|++||+.+++... .+++|.++|++++|.-+
T Consensus 134 ~~--~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~--------------~ftgh~s~v~t~~f~~~ 195 (541)
T KOG4547|consen 134 KV--IIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVI--------------TFTGHGSPVRTLSFTTL 195 (541)
T ss_pred ce--eeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEE--------------EecCCCcceEEEEEEEe
Confidence 55 5666777888899999999999999887 789999999987764 55667789999999887
Q ss_pred -----CcEEEEE
Q 021036 310 -----NLVVAMV 316 (318)
Q Consensus 310 -----~~~l~~~ 316 (318)
|.+++++
T Consensus 196 ~~g~~G~~vLss 207 (541)
T KOG4547|consen 196 IDGIIGKYVLSS 207 (541)
T ss_pred ccccccceeeec
Confidence 6776654
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.5e-12 Score=110.74 Aligned_cols=161 Identities=12% Similarity=0.025 Sum_probs=111.0
Q ss_pred CCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCC---CcEEEEECCCcce
Q 021036 93 SGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSD---GSVRIWDGYIQEL 169 (318)
Q Consensus 93 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d---~~v~iwd~~~~~~ 169 (318)
+..|.+||....+ .+.+..|...+.+++| +|+|+.|+..+.+ ..|++||+.+++.
T Consensus 183 ~~~i~i~d~dg~~---------------~~~lt~~~~~v~~p~w-------SPDG~~la~~s~~~~~~~i~i~dl~tg~~ 240 (429)
T PRK01742 183 PYEVRVADYDGFN---------------QFIVNRSSQPLMSPAW-------SPDGSKLAYVSFENKKSQLVVHDLRSGAR 240 (429)
T ss_pred eEEEEEECCCCCC---------------ceEeccCCCccccceE-------cCCCCEEEEEEecCCCcEEEEEeCCCCce
Confidence 4689999987532 2445667788999999 9999999887754 3699999987753
Q ss_pred eeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe-CCCcEEEeeeccCCCeeeEeeeeecccCceeEE
Q 021036 170 QKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK-GSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGL 248 (318)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~ 248 (318)
...... ......++|+ |||+.|+.+. .+|.+.||.++..++.. ..+..+...+...
T Consensus 241 ~~l~~~---------------~g~~~~~~wS-----PDG~~La~~~~~~g~~~Iy~~d~~~~~~---~~lt~~~~~~~~~ 297 (429)
T PRK01742 241 KVVASF---------------RGHNGAPAFS-----PDGSRLAFASSKDGVLNIYVMGANGGTP---SQLTSGAGNNTEP 297 (429)
T ss_pred EEEecC---------------CCccCceeEC-----CCCCEEEEEEecCCcEEEEEEECCCCCe---EeeccCCCCcCCE
Confidence 322111 0122357888 9999887764 68888888777766653 3445566678889
Q ss_pred EEcCCCCEEEEec-CCCcEEEEEecC--CceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 249 AWAFDGCCLYSCS-QDNFVRSWIFHG--NSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 249 ~~~~~~~~l~s~~-~d~~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
.|+|||+.|+..+ .++...||++.. +....+ . +.. ...+|+|||++|+.+
T Consensus 298 ~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l--~--------------~~~--~~~~~SpDG~~ia~~ 350 (429)
T PRK01742 298 SWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV--G--------------GRG--YSAQISADGKTLVMI 350 (429)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCeEEe--c--------------CCC--CCccCCCCCCEEEEE
Confidence 9999999776554 578888998754 222211 1 111 356899999988765
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.7e-12 Score=101.25 Aligned_cols=275 Identities=17% Similarity=0.178 Sum_probs=167.1
Q ss_pred CCCCCccceEEeeCCCceeEeecCCCCCCC-ceecchhcccccc---------ccceeeeeccccc-CCCCcccccccCC
Q 021036 12 MKDSNTHPTVAASKSKGNSITKIPSNCCLP-LITADQYASRSAM---------LHSLAVAWSPVLR-LSSKKYPVPQNGS 80 (318)
Q Consensus 12 ~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~---------~~~~~~~w~p~~~-~~~~~~~v~~~~~ 80 (318)
+++.+....+....|+++++|.+....... ............+ -....+...|... -.+|.+.|.++.+
T Consensus 93 ~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~ 172 (433)
T KOG1354|consen 93 LDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISV 172 (433)
T ss_pred cCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeee
Confidence 455666778999999999999886533222 1100000000000 0011234444332 3359999999999
Q ss_pred CCCccEEEEecCCCcEEEEEccCCc-cccccccccCCceeEEeeecc-----ccccEEEEEeeeecCCCCCCCcEEEEEe
Q 021036 81 SNWFSILAVGGRSGKVSLWRICVPK-CYSVEDCKVPTTAVLIGLFQA-----HNSWITSISLAVLSSDSSNPQVLLVTGS 154 (318)
Q Consensus 81 s~~~~~l~~g~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~~~~~p~~~~~~~~~~~l~s~~ 154 (318)
+.++..++++ .|-.|.+|+++-.. +. .+..++. -..-|++..|+|. ....|+-++
T Consensus 173 NsD~Et~lSA-DdLRINLWnlei~d~sF------------nIVDIKP~nmEeLteVITsaEFhp~------~cn~f~YSS 233 (433)
T KOG1354|consen 173 NSDKETFLSA-DDLRINLWNLEIIDQSF------------NIVDIKPANMEELTEVITSAEFHPH------HCNVFVYSS 233 (433)
T ss_pred cCccceEeec-cceeeeeccccccCCce------------eEEEccccCHHHHHHHHhhhccCHh------HccEEEEec
Confidence 9999998876 57889999997422 11 1122222 2356888899443 345788888
Q ss_pred CCCcEEEEECCCccee----eeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCC
Q 021036 155 SDGSVRIWDGYIQELQ----KSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCN 230 (318)
Q Consensus 155 ~d~~v~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~ 230 (318)
..|+|++.|++...+. +.+.....|.+. .....--..|+.+.|+ ++|+++++-+ --+|++||+++..+
T Consensus 234 SKGtIrLcDmR~~aLCd~hsKlfEepedp~~r--sffseiIsSISDvKFs-----~sGryilsRD-yltvk~wD~nme~~ 305 (433)
T KOG1354|consen 234 SKGTIRLCDMRQSALCDAHSKLFEEPEDPSSR--SFFSEIISSISDVKFS-----HSGRYILSRD-YLTVKLWDLNMEAK 305 (433)
T ss_pred CCCcEEEeechhhhhhcchhhhhccccCCcch--hhHHHHhhhhhceEEc-----cCCcEEEEec-cceeEEEeccccCC
Confidence 8999999999954221 112111111110 1112223478899999 9999999875 46899998776665
Q ss_pred eeeEeeeeeccc------------Cce---eEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCC--------
Q 021036 231 KFDKVGSYNAHD------------QVV---TGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPG-------- 287 (318)
Q Consensus 231 ~~~~~~~~~~h~------------~~v---~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~-------- 287 (318)
++.++.-|. ..| ..++|+-++.+++||+.....++|++..+....+........
T Consensus 306 ---pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k 382 (433)
T KOG1354|consen 306 ---PVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLK 382 (433)
T ss_pred ---cceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCccccccc
Confidence 444554442 122 356899888899999999999999976555443332221111
Q ss_pred --cc--cc--------ccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 288 --LQ--SC--------TDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 288 --~~--~~--------~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
.+ +. .+...-...+...+|+|....||++
T Consensus 383 ~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~ia~a 423 (433)
T KOG1354|consen 383 LRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENSIAVA 423 (433)
T ss_pred ceeeecCCCccccccccchhhhhhHHHhhccCCccceeeee
Confidence 11 11 1111334567788999988888765
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.8e-14 Score=123.61 Aligned_cols=119 Identities=21% Similarity=0.309 Sum_probs=106.1
Q ss_pred EEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEE
Q 021036 120 LIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSL 199 (318)
Q Consensus 120 ~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 199 (318)
.++.+.+|...|+|+.| ...|.++++|+.|..++||.++++.++....+|. +.|+.++.
T Consensus 182 ~ikrLlgH~naVyca~f-------Drtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs--------------~ditdlav 240 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIF-------DRTGRYIITGSDDRLVKIWSMETARCLASCRGHS--------------GDITDLAV 240 (1113)
T ss_pred HHHHHHhhhhheeeeee-------ccccceEeecCccceeeeeeccchhhhccCCCCc--------------cccchhcc
Confidence 44567789999999999 8999999999999999999999998888776655 48899999
Q ss_pred eeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEec
Q 021036 200 ILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFH 272 (318)
Q Consensus 200 ~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 272 (318)
+ .+..++++++.|..|++| .+.++. ++..+.+|++.|++++|+|.. +.+.||++++||.+
T Consensus 241 s-----~~n~~iaaaS~D~vIrvW--rl~~~~--pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 241 S-----SNNTMIAAASNDKVIRVW--RLPDGA--PVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR 300 (1113)
T ss_pred c-----hhhhhhhhcccCceEEEE--ecCCCc--hHHHHhccccceeeeccCccc----cCCCCCceEecccc
Confidence 8 778899999999999999 777776 888899999999999999975 67899999999988
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.5e-12 Score=113.39 Aligned_cols=189 Identities=17% Similarity=0.235 Sum_probs=141.7
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEE
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVS 97 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~ 97 (318)
..++.+..+..+.+||...+.....+... .+........+-.++. .-++++|+.-+.|.
T Consensus 100 k~i~l~~~~ns~~i~d~~~~~~~~~i~~~---er~~l~~~~~~g~s~~------------------~~~i~~gsv~~~ii 158 (967)
T KOG0974|consen 100 KKIALVTSRNSLLIRDSKNSSVLSKIQSD---ERCTLYSSLIIGDSAE------------------ELYIASGSVFGEII 158 (967)
T ss_pred ceEEEEEcCceEEEEecccCceehhcCCC---ceEEEEeEEEEeccCc------------------EEEEEeccccccEE
Confidence 44667777778888888776655554331 1222122222233333 37899999999999
Q ss_pred EEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccc
Q 021036 98 LWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHC 177 (318)
Q Consensus 98 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 177 (318)
+|+....+ .+. .+.+|.+.|.++.| +.+|+++++.|.|.++++|++++.+....
T Consensus 159 vW~~~~dn-------------~p~-~l~GHeG~iF~i~~-------s~dg~~i~s~SdDRsiRlW~i~s~~~~~~----- 212 (967)
T KOG0974|consen 159 VWKPHEDN-------------KPI-RLKGHEGSIFSIVT-------SLDGRYIASVSDDRSIRLWPIDSREVLGC----- 212 (967)
T ss_pred EEeccccC-------------Ccc-eecccCCceEEEEE-------ccCCcEEEEEecCcceeeeecccccccCc-----
Confidence 99998432 122 57899999999999 99999999999999999999998765541
Q ss_pred cccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeeccc-CceeEEEEcCCCCE
Q 021036 178 VPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHD-QVVTGLAWAFDGCC 256 (318)
Q Consensus 178 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~ 256 (318)
..-+|.+.+..+++. |+ .+++++.|.+.++|+++ ..+ +..+.+|. ..|..++..++...
T Consensus 213 --------~~fgHsaRvw~~~~~-----~n--~i~t~gedctcrvW~~~--~~~---l~~y~~h~g~~iw~~~~~~~~~~ 272 (967)
T KOG0974|consen 213 --------TGFGHSARVWACCFL-----PN--RIITVGEDCTCRVWGVN--GTQ---LEVYDEHSGKGIWKIAVPIGVII 272 (967)
T ss_pred --------ccccccceeEEEEec-----cc--eeEEeccceEEEEEecc--cce---ehhhhhhhhcceeEEEEcCCceE
Confidence 113466789999998 66 99999999999999543 333 33667776 46899999999999
Q ss_pred EEEecCCCcEEEEEecC
Q 021036 257 LYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 257 l~s~~~d~~v~iwd~~~ 273 (318)
.+|++.|+.+++|++.+
T Consensus 273 ~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 273 KVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EEeeccCcchhhhhhhc
Confidence 99999999999999875
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.7e-11 Score=103.87 Aligned_cols=163 Identities=11% Similarity=0.038 Sum_probs=111.7
Q ss_pred cEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeC---CCcEEEEECCCcceee
Q 021036 95 KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSS---DGSVRIWDGYIQELQK 171 (318)
Q Consensus 95 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~---d~~v~iwd~~~~~~~~ 171 (318)
.|.++|.... ..+.+..|...+.+.+| +++|+.|+..+. +..|.+||+.+++...
T Consensus 183 ~l~~~d~dg~---------------~~~~lt~~~~~v~~p~w-------SpDG~~lay~s~~~g~~~i~~~dl~~g~~~~ 240 (435)
T PRK05137 183 RLAIMDQDGA---------------NVRYLTDGSSLVLTPRF-------SPNRQEITYMSYANGRPRVYLLDLETGQREL 240 (435)
T ss_pred EEEEECCCCC---------------CcEEEecCCCCeEeeEE-------CCCCCEEEEEEecCCCCEEEEEECCCCcEEE
Confidence 6778887543 23445667889999999 899998887764 4689999998876432
Q ss_pred eecccccccccceeeeeecccceeEEEEeeccCCCCceEEE-EEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEE
Q 021036 172 SAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLA-VGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAW 250 (318)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~-~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~ 250 (318)
... ....+....|+ |+|+.|+ +.+.++...+|-++..++.. ..+..+........|
T Consensus 241 l~~---------------~~g~~~~~~~S-----PDG~~la~~~~~~g~~~Iy~~d~~~~~~---~~Lt~~~~~~~~~~~ 297 (435)
T PRK05137 241 VGN---------------FPGMTFAPRFS-----PDGRKVVMSLSQGGNTDIYTMDLRSGTT---TRLTDSPAIDTSPSY 297 (435)
T ss_pred eec---------------CCCcccCcEEC-----CCCCEEEEEEecCCCceEEEEECCCCce---EEccCCCCccCceeE
Confidence 211 12245567888 9998765 55667775555557766653 334445556677899
Q ss_pred cCCCCEEEEecC-CC--cEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 251 AFDGCCLYSCSQ-DN--FVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 251 ~~~~~~l~s~~~-d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
+|||+.|+..+. +| .|+++|+.++....+..... .+....|+|||++|+...
T Consensus 298 spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~---------------~~~~~~~SpdG~~ia~~~ 352 (435)
T PRK05137 298 SPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGG---------------RYSTPVWSPRGDLIAFTK 352 (435)
T ss_pred cCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCC---------------cccCeEECCCCCEEEEEE
Confidence 999998876653 33 68888887776665543321 346788999999988653
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.1e-11 Score=101.64 Aligned_cols=206 Identities=14% Similarity=0.061 Sum_probs=148.4
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCccccccc----CCCCCccEEEEecCC
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQN----GSSNWFSILAVGGRS 93 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~----~~s~~~~~l~~g~~d 93 (318)
...+....||.+||||...++..+.+.... ..-....+..|.-.. ........+. ..+.+...++-|...
T Consensus 6 ~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~----~~s~t~~~~~w~L~~--~~s~~k~~~~~~~~~~s~~t~~lvlgt~~ 79 (541)
T KOG4547|consen 6 DYFALSTGDGRLRIWDTAKNQLQQEFAPIA----SLSGTCTYTKWGLSA--DYSPMKWLSLEKAKKASLDTSMLVLGTPQ 79 (541)
T ss_pred heEeecCCCCeEEEEEccCceeeeeeccch----hccCcceeEEEEEEe--ccchHHHHhHHHHhhccCCceEEEeecCC
Confidence 446778899999999999988766665322 111123346665211 0011111211 234455788889999
Q ss_pred CcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeee
Q 021036 94 GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSA 173 (318)
Q Consensus 94 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 173 (318)
|.|.+|++..++. ...-+-..|.+.|+++.+ ..+-..|.+++.|+.+..|+...+......
T Consensus 80 g~v~~ys~~~g~i------------t~~~st~~h~~~v~~~~~-------~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~ 140 (541)
T KOG4547|consen 80 GSVLLYSVAGGEI------------TAKLSTDKHYGNVNEILD-------AQRLGCIYSVGADLKVVYILEKEKVIIRIW 140 (541)
T ss_pred ccEEEEEecCCeE------------EEEEecCCCCCcceeeec-------ccccCceEecCCceeEEEEecccceeeeee
Confidence 9999999998652 122222579999999999 777789999999999999999988777666
Q ss_pred cccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCC
Q 021036 174 EAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFD 253 (318)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 253 (318)
..... .+.+++++ |||..+++++ +.|++| +.++.+ .+.+|.+|.++|.+++|-..
T Consensus 141 ~~~~~--------------~~~sl~is-----~D~~~l~~as--~~ik~~--~~~~ke--vv~~ftgh~s~v~t~~f~~~ 195 (541)
T KOG4547|consen 141 KEQKP--------------LVSSLCIS-----PDGKILLTAS--RQIKVL--DIETKE--VVITFTGHGSPVRTLSFTTL 195 (541)
T ss_pred ccCCC--------------ccceEEEc-----CCCCEEEecc--ceEEEE--EccCce--EEEEecCCCcceEEEEEEEe
Confidence 55443 68899999 9999999985 689999 666776 78899999999999999876
Q ss_pred -----CCEEEEe-cCCCcEEEEEecC
Q 021036 254 -----GCCLYSC-SQDNFVRSWIFHG 273 (318)
Q Consensus 254 -----~~~l~s~-~~d~~v~iwd~~~ 273 (318)
|.+++++ ..+..+.+|-+..
T Consensus 196 ~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 196 IDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ccccccceeeeccccccceeEEEEEc
Confidence 6665544 5566688887654
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.1e-10 Score=102.61 Aligned_cols=185 Identities=12% Similarity=0.043 Sum_probs=119.6
Q ss_pred CcccccccCCCCCccEEEEecCC---CcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCC
Q 021036 71 KKYPVPQNGSSNWFSILAVGGRS---GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQ 147 (318)
Q Consensus 71 ~~~~v~~~~~s~~~~~l~~g~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~ 147 (318)
+...+....++++|++|+....+ ..|++|++.+++. ..+..+...+.+++| +++|
T Consensus 188 ~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~---------------~~~~~~~~~~~~~~~-------spDg 245 (417)
T TIGR02800 188 SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR---------------EKVASFPGMNGAPAF-------SPDG 245 (417)
T ss_pred CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE---------------EEeecCCCCccceEE-------CCCC
Confidence 44457788899999998887643 4799999987541 122334455677899 8898
Q ss_pred cEEE-EEeCCC--cEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe-CCCcEEEe
Q 021036 148 VLLV-TGSSDG--SVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK-GSGSFDLW 223 (318)
Q Consensus 148 ~~l~-s~~~d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~-~dg~i~vw 223 (318)
+.|+ +.+.++ .|.+||+.+++...... + ........|+ |+|+.|+..+ .++...+|
T Consensus 246 ~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~-~--------------~~~~~~~~~s-----~dg~~l~~~s~~~g~~~iy 305 (417)
T TIGR02800 246 SKLAVSLSKDGNPDIYVMDLDGKQLTRLTN-G--------------PGIDTEPSWS-----PDGKSIAFTSDRGGSPQIY 305 (417)
T ss_pred CEEEEEECCCCCccEEEEECCCCCEEECCC-C--------------CCCCCCEEEC-----CCCCEEEEEECCCCCceEE
Confidence 8665 444444 58888988765432211 1 1123345787 8998776655 44554555
Q ss_pred eeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCC---cEEEEEecCCceeeeecCCCCCCccccccCCCccee
Q 021036 224 KCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDN---FVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVS 300 (318)
Q Consensus 224 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 300 (318)
.++..+++.. .+..+...+..+.|+|+|++++.++.++ .|.+||+.++....+.... .
T Consensus 306 ~~d~~~~~~~---~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~----------------~ 366 (417)
T TIGR02800 306 MMDADGGEVR---RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTG----------------L 366 (417)
T ss_pred EEECCCCCEE---EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCC----------------C
Confidence 4466665532 3333455667889999999988887775 7888998775544332111 1
Q ss_pred eeEEEEcCCCcEEEEE
Q 021036 301 CLGMAVSPGNLVVAMV 316 (318)
Q Consensus 301 v~~v~~sp~~~~l~~~ 316 (318)
....+|+|||++|+..
T Consensus 367 ~~~p~~spdg~~l~~~ 382 (417)
T TIGR02800 367 DESPSFAPNGRMILYA 382 (417)
T ss_pred CCCceECCCCCEEEEE
Confidence 2356899999887764
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.7e-11 Score=93.11 Aligned_cols=105 Identities=14% Similarity=0.177 Sum_probs=82.1
Q ss_pred EEEEE-eCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCc-EEEeeec
Q 021036 149 LLVTG-SSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGS-FDLWKCD 226 (318)
Q Consensus 149 ~l~s~-~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~-i~vw~~~ 226 (318)
+|+.= -.-|.|.|-|+...+.-. .....+|...|.+++++ .+|.++|+++..|+ |++| |
T Consensus 150 ~LafPg~k~GqvQi~dL~~~~~~~------------p~~I~AH~s~Iacv~Ln-----~~Gt~vATaStkGTLIRIF--d 210 (346)
T KOG2111|consen 150 LLAFPGFKTGQVQIVDLASTKPNA------------PSIINAHDSDIACVALN-----LQGTLVATASTKGTLIRIF--D 210 (346)
T ss_pred EEEcCCCccceEEEEEhhhcCcCC------------ceEEEcccCceeEEEEc-----CCccEEEEeccCcEEEEEE--E
Confidence 44433 345899999988654420 02335667799999999 89999999999998 7899 6
Q ss_pred cCCCeeeEeeeeec--ccCceeEEEEcCCCCEEEEecCCCcEEEEEecCC
Q 021036 227 ISCNKFDKVGSYNA--HDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGN 274 (318)
Q Consensus 227 ~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 274 (318)
..+++ ++.+++. ....|++++|||++.+||++|+.|+|.||.++..
T Consensus 211 t~~g~--~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 211 TEDGT--LLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred cCCCc--EeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 77776 6666653 3467999999999999999999999999999763
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.1e-10 Score=100.71 Aligned_cols=161 Identities=12% Similarity=0.017 Sum_probs=98.6
Q ss_pred cEEEE-ecCCC--cEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCC-CcEE
Q 021036 85 SILAV-GGRSG--KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSD-GSVR 160 (318)
Q Consensus 85 ~~l~~-g~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d-~~v~ 160 (318)
+.|+. .+.+| .|.+||+++++. +.+..+...+....| +++|+.|+..+.+ +...
T Consensus 255 ~~La~~~~~~g~~~I~~~d~~tg~~---------------~~lt~~~~~~~~~~w-------SPDG~~I~f~s~~~g~~~ 312 (429)
T PRK03629 255 SKLAFALSKTGSLNLYVMDLASGQI---------------RQVTDGRSNNTEPTW-------FPDSQNLAYTSDQAGRPQ 312 (429)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCE---------------EEccCCCCCcCceEE-------CCCCCEEEEEeCCCCCce
Confidence 76664 45555 488889887542 223334456788999 8999988776654 4444
Q ss_pred EE--ECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeC-CC--cEEEeeeccCCCeeeEe
Q 021036 161 IW--DGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKG-SG--SFDLWKCDISCNKFDKV 235 (318)
Q Consensus 161 iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~-dg--~i~vw~~~~~~~~~~~~ 235 (318)
+| |+.+++... +.. .........|+ |+|+.++..+. ++ .|.+| +..++..+.+
T Consensus 313 Iy~~d~~~g~~~~-lt~--------------~~~~~~~~~~S-----pDG~~Ia~~~~~~g~~~I~~~--dl~~g~~~~L 370 (429)
T PRK03629 313 VYKVNINGGAPQR-ITW--------------EGSQNQDADVS-----SDGKFMVMVSSNGGQQHIAKQ--DLATGGVQVL 370 (429)
T ss_pred EEEEECCCCCeEE-eec--------------CCCCccCEEEC-----CCCCEEEEEEccCCCceEEEE--ECCCCCeEEe
Confidence 55 665553322 211 11134467788 99998877654 33 35566 6666654333
Q ss_pred eeeecccCceeEEEEcCCCCEEEEecCCCc---EEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcC
Q 021036 236 GSYNAHDQVVTGLAWAFDGCCLYSCSQDNF---VRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSP 308 (318)
Q Consensus 236 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~---v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp 308 (318)
. . ........|+|||++|+.++.++. +.++++.++....+..++ +.+...+|+|
T Consensus 371 t---~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~~~---------------~~~~~p~Wsp 427 (429)
T PRK03629 371 T---D-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATD---------------GQVKFPAWSP 427 (429)
T ss_pred C---C-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEECccCC---------------CCcCCcccCC
Confidence 2 1 122346789999999998887764 677777665555544322 3567788887
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.9e-10 Score=99.80 Aligned_cols=149 Identities=15% Similarity=0.086 Sum_probs=100.4
Q ss_pred eeccccccEEEEEeeeecCCCCCCCcEEEEEeCC---CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEE
Q 021036 123 LFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSD---GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSL 199 (318)
Q Consensus 123 ~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 199 (318)
.+..+...+.+.+| +|+|+.|+..+.+ ..|.+||+.+++....... ........|
T Consensus 190 ~l~~~~~~v~~p~w-------SPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~---------------~g~~~~~~~ 247 (427)
T PRK02889 190 SALSSPEPIISPAW-------SPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANF---------------KGSNSAPAW 247 (427)
T ss_pred EeccCCCCcccceE-------cCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecC---------------CCCccceEE
Confidence 34466778999999 8999988877643 3599999988765332111 113456788
Q ss_pred eeccCCCCceEEE-EEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecC-CCcEEEEEec--CCc
Q 021036 200 ILPVQSPRLMLLA-VGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQ-DNFVRSWIFH--GNS 275 (318)
Q Consensus 200 ~~~~~~~~~~~l~-~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d~~v~iwd~~--~~~ 275 (318)
+ |||+.|+ +.+.+|...+|.++..++.. ..+..+........|+|||+.|+..+. ++...||.+. ++.
T Consensus 248 S-----PDG~~la~~~~~~g~~~Iy~~d~~~~~~---~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~ 319 (427)
T PRK02889 248 S-----PDGRTLAVALSRDGNSQIYTVNADGSGL---RRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA 319 (427)
T ss_pred C-----CCCCEEEEEEccCCCceEEEEECCCCCc---EECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc
Confidence 8 9998776 56788888888777766543 334445555667889999998776554 4666677653 444
Q ss_pred eeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 276 LSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
...+..... .....+|+|||++|+..
T Consensus 320 ~~~lt~~g~---------------~~~~~~~SpDG~~Ia~~ 345 (427)
T PRK02889 320 AQRVTFTGS---------------YNTSPRISPDGKLLAYI 345 (427)
T ss_pred eEEEecCCC---------------CcCceEECCCCCEEEEE
Confidence 443332221 22467899999998864
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.5e-10 Score=98.67 Aligned_cols=183 Identities=17% Similarity=0.224 Sum_probs=126.6
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEEC
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDG 164 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~ 164 (318)
.+++. +....|+-++++.|. .+..+....+.++++.. ++...+|++|+.+|.|.+||.
T Consensus 147 Dly~~-gsg~evYRlNLEqGr--------------fL~P~~~~~~~lN~v~i-------n~~hgLla~Gt~~g~VEfwDp 204 (703)
T KOG2321|consen 147 DLYLV-GSGSEVYRLNLEQGR--------------FLNPFETDSGELNVVSI-------NEEHGLLACGTEDGVVEFWDP 204 (703)
T ss_pred cEEEe-ecCcceEEEEccccc--------------cccccccccccceeeee-------cCccceEEecccCceEEEecc
Confidence 34444 444568888888854 55667767789999999 677779999999999999999
Q ss_pred CCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCc
Q 021036 165 YIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQV 244 (318)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~ 244 (318)
+..+.+..+...... ...........|+++.|+ .+|-.+++|..+|.|.+| |++..++..+ .-.+..-+
T Consensus 205 R~ksrv~~l~~~~~v---~s~pg~~~~~svTal~F~-----d~gL~~aVGts~G~v~iy--DLRa~~pl~~-kdh~~e~p 273 (703)
T KOG2321|consen 205 RDKSRVGTLDAASSV---NSHPGGDAAPSVTALKFR-----DDGLHVAVGTSTGSVLIY--DLRASKPLLV-KDHGYELP 273 (703)
T ss_pred hhhhhheeeeccccc---CCCccccccCcceEEEec-----CCceeEEeeccCCcEEEE--EcccCCceee-cccCCccc
Confidence 987776665543210 000001122358999998 779999999999999999 5555553222 22334568
Q ss_pred eeEEEEcCC--CCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 245 VTGLAWAFD--GCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 245 v~~~~~~~~--~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
|..+.|.+. +..+++. ....++|||-.+++........ ..++.+++-|++-++.++
T Consensus 274 i~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt---------------~~lND~C~~p~sGm~f~A 331 (703)
T KOG2321|consen 274 IKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPT---------------SDLNDFCFVPGSGMFFTA 331 (703)
T ss_pred eeeecccccCCCceEEec-chHHhhhcccccCCceeecccc---------------CCcCceeeecCCceEEEe
Confidence 889999775 4455554 4568999999887766433322 257888888887777765
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=3e-10 Score=90.62 Aligned_cols=239 Identities=15% Similarity=0.126 Sum_probs=137.3
Q ss_pred cCCCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEe
Q 021036 11 KMKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVG 90 (318)
Q Consensus 11 ~~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g 90 (318)
+++....+.+..++.|+.|.+|++...+..-.+...+.+ ...+.|+|++ ..+|.+.
T Consensus 55 eW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~ag-------ls~~~WSPdg-----------------rhiL~ts 110 (447)
T KOG4497|consen 55 EWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAG-------LSSISWSPDG-----------------RHILLTS 110 (447)
T ss_pred eeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCc-------ceeeeECCCc-----------------ceEeeee
Confidence 344455677888999999999999887765555542211 2348999998 3677888
Q ss_pred cCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECC---Cc
Q 021036 91 GRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGY---IQ 167 (318)
Q Consensus 91 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~---~~ 167 (318)
..|-.|.+|.+.+..+. .++--...+..++| .++|++.+.+++-...-...+. .-
T Consensus 111 eF~lriTVWSL~t~~~~---------------~~~~pK~~~kg~~f-------~~dg~f~ai~sRrDCkdyv~i~~c~~W 168 (447)
T KOG4497|consen 111 EFDLRITVWSLNTQKGY---------------LLPHPKTNVKGYAF-------HPDGQFCAILSRRDCKDYVQISSCKAW 168 (447)
T ss_pred cceeEEEEEEeccceeE---------------EecccccCceeEEE-------CCCCceeeeeecccHHHHHHHHhhHHH
Confidence 88999999999986532 12222334566777 6777766665532110000000 00
Q ss_pred ceeeeecc-----cccccccce------------e-eeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEee---ec
Q 021036 168 ELQKSAEA-----HCVPFSLLK------------E-VVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWK---CD 226 (318)
Q Consensus 168 ~~~~~~~~-----~~~~~~~~~------------~-~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~---~~ 226 (318)
..++.+.. ....+.+.. . ....-.-.+..+.|+ |.+++|++|+.|+.+++-+ +.
T Consensus 169 ~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~ws-----P~~qflavGsyD~~lrvlnh~tWk 243 (447)
T KOG4497|consen 169 ILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWS-----PCNQFLAVGSYDQMLRVLNHFTWK 243 (447)
T ss_pred HHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEec-----cccceEEeeccchhhhhhceeeee
Confidence 00000000 000000000 0 011223467788888 9999999999999998765 00
Q ss_pred ----------------------------------------cCCCe-------------eeEeeeee------cccCceeE
Q 021036 227 ----------------------------------------ISCNK-------------FDKVGSYN------AHDQVVTG 247 (318)
Q Consensus 227 ----------------------------------------~~~~~-------------~~~~~~~~------~h~~~v~~ 247 (318)
...+. +..+..++ .....+--
T Consensus 244 ~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~ 323 (447)
T KOG4497|consen 244 PFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGK 323 (447)
T ss_pred ehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccce
Confidence 00000 00001111 11234556
Q ss_pred EEEcCCCCEEEEecCC--CcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 248 LAWAFDGCCLYSCSQD--NFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 248 ~~~~~~~~~l~s~~~d--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
++|++|..+++|-... ..+-+||++.-++..+..... +|....|+|....|+.
T Consensus 324 lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~---------------piraf~WdP~~prL~v 378 (447)
T KOG4497|consen 324 LAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKH---------------PIRAFEWDPGRPRLVV 378 (447)
T ss_pred eeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhcc---------------ceeEEEeCCCCceEEE
Confidence 8999999999887544 679999998866654443332 6677777775554443
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.5e-10 Score=92.77 Aligned_cols=209 Identities=18% Similarity=0.195 Sum_probs=150.6
Q ss_pred ceEEeeCCCceeEe-ecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEE
Q 021036 19 PTVAASKSKGNSIT-KIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVS 97 (318)
Q Consensus 19 ~~~t~s~d~~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~ 97 (318)
-+++.|.|.++|+| +...++..+.+.. ..+. ...++.+++.. ..|++|-..|++.
T Consensus 38 gv~~~s~drtvrv~lkrds~q~wpsI~~-~mP~-----~~~~~~y~~e~------------------~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 38 GVISVSEDRTVRVWLKRDSGQYWPSIYH-YMPS-----PCSAMEYVSES------------------RRLYVGQDNGTVT 93 (404)
T ss_pred CeEEccccceeeeEEeccccccCchhhh-hCCC-----CceEeeeeccc------------------eEEEEEEecceEE
Confidence 36899999999999 5666777666643 1111 13346677766 8999999999999
Q ss_pred EEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeec---
Q 021036 98 LWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAE--- 174 (318)
Q Consensus 98 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~--- 174 (318)
-+.+...-. .....+.+..|..+|..+-| +...+++++.+.|..+.---.+.+..+....
T Consensus 94 efs~sedfn----------km~~~r~~~~h~~~v~~~if-------~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~ 156 (404)
T KOG1409|consen 94 EFALSEDFN----------KMTFLKDYLAHQARVSAIVF-------SLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFET 156 (404)
T ss_pred EEEhhhhhh----------hcchhhhhhhhhcceeeEEe-------cCCceeEEEeccccceEEEeeccCCcccceEeec
Confidence 888764210 02355677889999999999 7778889999988776655555443322110
Q ss_pred ---------------ccccccccce---------eeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCC
Q 021036 175 ---------------AHCVPFSLLK---------EVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCN 230 (318)
Q Consensus 175 ---------------~~~~~~~~~~---------~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~ 230 (318)
.+...+..++ ....+|...+.+++|. +...+|++|..|..+.+||+-.+.+
T Consensus 157 ~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd-----~~~~~LfSg~~d~~vi~wdigg~~g 231 (404)
T KOG1409|consen 157 PASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWD-----PGQRLLFSGASDHSVIMWDIGGRKG 231 (404)
T ss_pred cCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEc-----CCCcEEEeccccCceEEEeccCCcc
Confidence 0111111111 2345788899999999 8999999999999999997765555
Q ss_pred eeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCce
Q 021036 231 KFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSL 276 (318)
Q Consensus 231 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 276 (318)
...++.+|...|..+..-+.-+.+.+++.||.|.+|+++....
T Consensus 232 ---~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 232 ---TAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRV 274 (404)
T ss_pred ---eeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceee
Confidence 3566788999999998887778899999999999999975433
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.7e-10 Score=88.70 Aligned_cols=188 Identities=16% Similarity=0.075 Sum_probs=125.0
Q ss_pred cccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeC
Q 021036 76 PQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSS 155 (318)
Q Consensus 76 ~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~ 155 (318)
.++++++.+..++++..+|.+.+-+..... .+.++.++.|..+++...| +..+.+++.+|+.
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~------------le~vq~wk~He~E~Wta~f------~~~~pnlvytGgD 186 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMV------------LEKVQTWKVHEFEAWTAKF------SDKEPNLVYTGGD 186 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceee------------eeecccccccceeeeeeec------ccCCCceEEecCC
Confidence 344555555889999999999966665533 3455688999999999999 4556689999999
Q ss_pred CCcEEEEECCCc-ceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCC-Ceee
Q 021036 156 DGSVRIWDGYIQ-ELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISC-NKFD 233 (318)
Q Consensus 156 d~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~-~~~~ 233 (318)
|+.+..||++.. +.+.. -...|...|.+|.-+ ||.+.++++|+.|-.|++| |.|. ++
T Consensus 187 D~~l~~~D~R~p~~~i~~-------------n~kvH~~GV~SI~ss----~~~~~~I~TGsYDe~i~~~--DtRnm~k-- 245 (339)
T KOG0280|consen 187 DGSLSCWDIRIPKTFIWH-------------NSKVHTSGVVSIYSS----PPKPTYIATGSYDECIRVL--DTRNMGK-- 245 (339)
T ss_pred CceEEEEEecCCcceeee-------------cceeeecceEEEecC----CCCCceEEEeccccceeee--ehhcccC--
Confidence 999999999933 22221 113455688888888 5889999999999999999 5553 33
Q ss_pred EeeeeecccCceeEEEEcCC--CCEEEEecCCCcEEEEEecCCcee---eeecCCCCCCccccccCCCcceeeeEEEEcC
Q 021036 234 KVGSYNAHDQVVTGLAWAFD--GCCLYSCSQDNFVRSWIFHGNSLS---QVSIPTNTPGLQSCTDLPDAFVSCLGMAVSP 308 (318)
Q Consensus 234 ~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~d~~v~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp 308 (318)
++..-. -.+.|+.+.++|. +..|+++ .-.-.+|-+...+... .+... ..|.+-+++-.|..
T Consensus 246 Pl~~~~-v~GGVWRi~~~p~~~~~lL~~C-Mh~G~ki~~~~~~~~e~~~~~~s~------------~~hdSl~YG~DWd~ 311 (339)
T KOG0280|consen 246 PLFKAK-VGGGVWRIKHHPEIFHRLLAAC-MHNGAKILDSSDKVLEFQIVLPSD------------KIHDSLCYGGDWDS 311 (339)
T ss_pred ccccCc-cccceEEEEecchhhhHHHHHH-HhcCceEEEecccccchheeeecc------------ccccceeecccccc
Confidence 443322 3478999999995 3344444 4444667776654333 11111 22444556666644
Q ss_pred CCcEEEEE
Q 021036 309 GNLVVAMV 316 (318)
Q Consensus 309 ~~~~l~~~ 316 (318)
...+|||+
T Consensus 312 ~~~~lATC 319 (339)
T KOG0280|consen 312 KDSFLATC 319 (339)
T ss_pred ccceeeee
Confidence 44456654
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.4e-11 Score=102.13 Aligned_cols=188 Identities=15% Similarity=0.204 Sum_probs=133.9
Q ss_pred ccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEE
Q 021036 73 YPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVT 152 (318)
Q Consensus 73 ~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s 152 (318)
.+|..++|-|..-+|++++..|-++.-|+.+|+ .+..+..-.+.+..++- +|-...+-+
T Consensus 210 ~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gk--------------lVa~~~t~~G~~~vm~q-------NP~NaVih~ 268 (545)
T KOG1272|consen 210 IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGK--------------LVASIRTGAGRTDVMKQ-------NPYNAVIHL 268 (545)
T ss_pred CchhhhcccchhheeeecccCCceEEEeechhh--------------hhHHHHccCCccchhhc-------CCccceEEE
Confidence 356666666666899999999999999999954 55667666788888888 666668889
Q ss_pred EeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCee
Q 021036 153 GSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKF 232 (318)
Q Consensus 153 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~ 232 (318)
|...|+|.+|.....+.+..+..| .++|+++++. ++|.+++|.+.|..++|| |++...
T Consensus 269 GhsnGtVSlWSP~skePLvKiLcH--------------~g~V~siAv~-----~~G~YMaTtG~Dr~~kIW--DlR~~~- 326 (545)
T KOG1272|consen 269 GHSNGTVSLWSPNSKEPLVKILCH--------------RGPVSSIAVD-----RGGRYMATTGLDRKVKIW--DLRNFY- 326 (545)
T ss_pred cCCCceEEecCCCCcchHHHHHhc--------------CCCcceEEEC-----CCCcEEeecccccceeEe--eecccc-
Confidence 999999999999887776665544 4599999999 999999999999999999 455543
Q ss_pred eEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEec-CCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCc
Q 021036 233 DKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFH-GNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNL 311 (318)
Q Consensus 233 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 311 (318)
.+.++.. ..+...+++|..| ++..+....|.||.=. .+. .+...+++.- ...++|.++.|+|-..
T Consensus 327 -ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s-----~~~~~pYm~H-----~~~~~V~~l~FcP~ED 392 (545)
T KOG1272|consen 327 -QLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIWKDALKGS-----GHGETPYMNH-----RCGGPVEDLRFCPYED 392 (545)
T ss_pred -ccceeec-CCCcccccccccc--ceeeecCCeeeeehhhhcCC-----CCCCcchhhh-----ccCcccccceeccHHH
Confidence 3444433 3456778888666 5556666789999532 111 0111111110 0123788888888777
Q ss_pred EEEEEe
Q 021036 312 VVAMVQ 317 (318)
Q Consensus 312 ~l~~~~ 317 (318)
.|..||
T Consensus 393 vLGIGH 398 (545)
T KOG1272|consen 393 VLGIGH 398 (545)
T ss_pred eeeccc
Confidence 777665
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=6e-11 Score=94.53 Aligned_cols=204 Identities=18% Similarity=0.201 Sum_probs=134.7
Q ss_pred eEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEEE
Q 021036 20 TVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLW 99 (318)
Q Consensus 20 ~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw 99 (318)
-++...+..+.|-|.++-+..+.+.+ -+.+.. +.|..+. ...|.....|+.|.+|
T Consensus 22 yiAs~~~yrlviRd~~tlq~~qlf~c-----ldki~y---ieW~ads-----------------~~ilC~~yk~~~vqvw 76 (447)
T KOG4497|consen 22 YIASLSRYRLVIRDSETLQLHQLFLC-----LDKIVY---IEWKADS-----------------CHILCVAYKDPKVQVW 76 (447)
T ss_pred eeeeeeeeEEEEeccchhhHHHHHHH-----HHHhhh---eeeeccc-----------------eeeeeeeeccceEEEE
Confidence 34444555788889888776665554 222222 8888776 2455666889999999
Q ss_pred EccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCc-EEEEEeCCCcEEEEECCCcceeeeeccccc
Q 021036 100 RICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQV-LLVTGSSDGSVRIWDGYIQELQKSAEAHCV 178 (318)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~ 178 (318)
++..++ -...+....+++.+++| +|+|+ +|.+..-|-+|.+|.+.+.+....-..
T Consensus 77 sl~Qpe--------------w~ckIdeg~agls~~~W-------SPdgrhiL~tseF~lriTVWSL~t~~~~~~~~p--- 132 (447)
T KOG4497|consen 77 SLVQPE--------------WYCKIDEGQAGLSSISW-------SPDGRHILLTSEFDLRITVWSLNTQKGYLLPHP--- 132 (447)
T ss_pred Eeecce--------------eEEEeccCCCcceeeeE-------CCCcceEeeeecceeEEEEEEeccceeEEeccc---
Confidence 999855 34566777889999999 89995 555666789999999988765443221
Q ss_pred ccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccC-CCeeeEeeeeecccCceeEEEEcCCCCEE
Q 021036 179 PFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDIS-CNKFDKVGSYNAHDQVVTGLAWAFDGCCL 257 (318)
Q Consensus 179 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 257 (318)
+..+..++|+ |+|++.+..+.-.....+ .+. ...++.+.+++-.+-..+.+.|+|||..|
T Consensus 133 ------------K~~~kg~~f~-----~dg~f~ai~sRrDCkdyv--~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~l 193 (447)
T KOG4497|consen 133 ------------KTNVKGYAFH-----PDGQFCAILSRRDCKDYV--QISSCKAWILLKEFKLDTIDLTGIEWSPDGNWL 193 (447)
T ss_pred ------------ccCceeEEEC-----CCCceeeeeecccHHHHH--HHHhhHHHHHHHhcCCCcccccCceECCCCcEE
Confidence 2256788998 999999888743222222 111 22334555566566678899999999887
Q ss_pred EEecC--CCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 258 YSCSQ--DNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 258 ~s~~~--d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
+.-.. +..|..|.. +-.+..++|+|.+++|+.|.
T Consensus 194 aVwd~~Leykv~aYe~--------------------------~lG~k~v~wsP~~qflavGs 229 (447)
T KOG4497|consen 194 AVWDNVLEYKVYAYER--------------------------GLGLKFVEWSPCNQFLAVGS 229 (447)
T ss_pred EEecchhhheeeeeee--------------------------ccceeEEEeccccceEEeec
Confidence 64321 122222211 12567888888888888874
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.6e-09 Score=95.54 Aligned_cols=171 Identities=12% Similarity=0.065 Sum_probs=103.1
Q ss_pred cEEEEecCC---CcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEE-EEeCCC--c
Q 021036 85 SILAVGGRS---GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLV-TGSSDG--S 158 (318)
Q Consensus 85 ~~l~~g~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~-s~~~d~--~ 158 (318)
+.|+..+.+ ..|.+|++.+++. +.+. ...+.+....| +|+|+.|+ +.+.++ .
T Consensus 211 ~~la~~s~~~~~~~l~~~~l~~g~~------------~~l~---~~~g~~~~~~~-------SpDG~~la~~~~~~g~~~ 268 (430)
T PRK00178 211 KRIAYVSFEQKRPRIFVQNLDTGRR------------EQIT---NFEGLNGAPAW-------SPDGSKLAFVLSKDGNPE 268 (430)
T ss_pred CEEEEEEcCCCCCEEEEEECCCCCE------------EEcc---CCCCCcCCeEE-------CCCCCEEEEEEccCCCce
Confidence 777655433 3588899987652 2222 22334556899 89998776 444555 5
Q ss_pred EEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe-CCCcEEEeeeccCCCeeeEeee
Q 021036 159 VRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK-GSGSFDLWKCDISCNKFDKVGS 237 (318)
Q Consensus 159 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~ 237 (318)
|.+||+.+++... +..+ ........|+ |+|+.++..+ .+|...+|.++..+++.+.+.
T Consensus 269 Iy~~d~~~~~~~~-lt~~--------------~~~~~~~~~s-----pDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt- 327 (430)
T PRK00178 269 IYVMDLASRQLSR-VTNH--------------PAIDTEPFWG-----KDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT- 327 (430)
T ss_pred EEEEECCCCCeEE-cccC--------------CCCcCCeEEC-----CCCCEEEEEECCCCCceEEEEECCCCCEEEee-
Confidence 8888988765432 2211 1133456788 8988766554 455555555566666543332
Q ss_pred eecccCceeEEEEcCCCCEEEEecCC-C--cEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEE
Q 021036 238 YNAHDQVVTGLAWAFDGCCLYSCSQD-N--FVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVA 314 (318)
Q Consensus 238 ~~~h~~~v~~~~~~~~~~~l~s~~~d-~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~ 314 (318)
+. ........|+|+|++|+..+.+ + .|.+||+.++....+.... ......|+|||++|+
T Consensus 328 ~~--~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~----------------~~~~p~~spdg~~i~ 389 (430)
T PRK00178 328 FV--GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTS----------------LDESPSVAPNGTMLI 389 (430)
T ss_pred cC--CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCC----------------CCCCceECCCCCEEE
Confidence 22 2233457899999988766543 3 5888898887655443211 112458999998887
Q ss_pred EE
Q 021036 315 MV 316 (318)
Q Consensus 315 ~~ 316 (318)
..
T Consensus 390 ~~ 391 (430)
T PRK00178 390 YA 391 (430)
T ss_pred EE
Confidence 54
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.2e-11 Score=98.94 Aligned_cols=246 Identities=14% Similarity=0.073 Sum_probs=152.9
Q ss_pred eccCcCCCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccE
Q 021036 7 FTSNKMKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSI 86 (318)
Q Consensus 7 ~~~~~~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~ 86 (318)
|++--+..++-.++++++.||.+|+=.+....+...... -..|.+.+.. ++-.|.. ..-
T Consensus 189 fQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~r-l~~h~g~vhk---lav~p~s-----------------p~~ 247 (559)
T KOG1334|consen 189 FQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKR-LAPHEGPVHK---LAVEPDS-----------------PKP 247 (559)
T ss_pred hhhhccCCCCCcCceeccccCceeeeeeccccceeccee-cccccCccce---eeecCCC-----------------CCc
Confidence 444445666778889999999999986654333221111 1223433222 3333433 477
Q ss_pred EEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccc---cEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEE
Q 021036 87 LAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNS---WITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWD 163 (318)
Q Consensus 87 l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd 163 (318)
|.+++.|+.+.-.|+..+... ..+..-..+.. ..+.++.. +.+..++++++.|..+++||
T Consensus 248 f~S~geD~~v~~~Dlr~~~pa-----------~~~~cr~~~~~~~v~L~~Ia~~------P~nt~~faVgG~dqf~RvYD 310 (559)
T KOG1334|consen 248 FLSCGEDAVVFHIDLRQDVPA-----------EKFVCREADEKERVGLYTIAVD------PRNTNEFAVGGSDQFARVYD 310 (559)
T ss_pred ccccccccceeeeeeccCCcc-----------ceeeeeccCCccceeeeeEecC------CCCccccccCChhhhhhhhc
Confidence 899999999999999875421 11222223333 46778873 33445799999999999999
Q ss_pred CCCccee------eeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCC------e
Q 021036 164 GYIQELQ------KSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCN------K 231 (318)
Q Consensus 164 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~------~ 231 (318)
.+.-... ..+..+ .........|++++|+ .++.-|+++-.|-.|++|.-++..+ .
T Consensus 311 ~R~~~~e~~n~~~~~f~p~--------hl~~d~~v~ITgl~Ys-----h~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s 377 (559)
T KOG1334|consen 311 QRRIDKEENNGVLDKFCPH--------HLVEDDPVNITGLVYS-----HDGSELLASYNDEDIYLFNKSMGDGSEPDPSS 377 (559)
T ss_pred ccchhhccccchhhhcCCc--------cccccCcccceeEEec-----CCccceeeeecccceEEeccccccCCCCCCCc
Confidence 8854322 222111 1112334578999998 7877777777799999995444333 0
Q ss_pred --eeEee-eeecccC--ceeEEE-EcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEE
Q 021036 232 --FDKVG-SYNAHDQ--VVTGLA-WAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMA 305 (318)
Q Consensus 232 --~~~~~-~~~~h~~--~v~~~~-~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 305 (318)
-..+. .+++|.. .|-++- |-|...|+++|+.-|.|+||+-.++++..+..... | .|+|+.
T Consensus 378 ~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr------------~--VVNCLE 443 (559)
T KOG1334|consen 378 PREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDR------------H--VVNCLE 443 (559)
T ss_pred chhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhccc------------c--eEeccC
Confidence 01222 2778864 455665 45788899999999999999998877764432221 1 556666
Q ss_pred EcCCCcEEEEEe
Q 021036 306 VSPGNLVVAMVQ 317 (318)
Q Consensus 306 ~sp~~~~l~~~~ 317 (318)
=+|--..||+..
T Consensus 444 pHP~~PvLAsSG 455 (559)
T KOG1334|consen 444 PHPHLPVLASSG 455 (559)
T ss_pred CCCCCchhhccC
Confidence 666555555543
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.5e-09 Score=95.65 Aligned_cols=185 Identities=14% Similarity=0.085 Sum_probs=112.5
Q ss_pred CcccccccCCCCCccEEEEecC-CC--cEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCC
Q 021036 71 KKYPVPQNGSSNWFSILAVGGR-SG--KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQ 147 (318)
Q Consensus 71 ~~~~v~~~~~s~~~~~l~~g~~-dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~ 147 (318)
+...+....++|+|+.|+..+. ++ .|.+||+.+++ .+.+..+.+ ......| +++|
T Consensus 216 ~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~------------~~~lt~~~g---~~~~~~w-------SPDG 273 (448)
T PRK04792 216 SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQV------------REKVTSFPG---INGAPRF-------SPDG 273 (448)
T ss_pred CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCC------------eEEecCCCC---CcCCeeE-------CCCC
Confidence 3446678899999998877643 33 57888887754 223333322 3346789 8999
Q ss_pred cEEEE-EeCCCc--EEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe-CCCcEEEe
Q 021036 148 VLLVT-GSSDGS--VRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK-GSGSFDLW 223 (318)
Q Consensus 148 ~~l~s-~~~d~~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~-~dg~i~vw 223 (318)
+.|+. .+.++. |.++|+.+++... +..+ .......+|+ |+|+.++..+ .++...+|
T Consensus 274 ~~La~~~~~~g~~~Iy~~dl~tg~~~~-lt~~--------------~~~~~~p~wS-----pDG~~I~f~s~~~g~~~Iy 333 (448)
T PRK04792 274 KKLALVLSKDGQPEIYVVDIATKALTR-ITRH--------------RAIDTEPSWH-----PDGKSLIFTSERGGKPQIY 333 (448)
T ss_pred CEEEEEEeCCCCeEEEEEECCCCCeEE-CccC--------------CCCccceEEC-----CCCCEEEEEECCCCCceEE
Confidence 87765 556664 7777887765432 2111 1134566888 8998776554 45666777
Q ss_pred eeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecC-CC--cEEEEEecCCceeeeecCCCCCCccccccCCCccee
Q 021036 224 KCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQ-DN--FVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVS 300 (318)
Q Consensus 224 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 300 (318)
.++..+++.+.+. +.+ ......+|+|+|++|+..+. ++ .|.++|+.++....+.... .
T Consensus 334 ~~dl~~g~~~~Lt-~~g--~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~----------------~ 394 (448)
T PRK04792 334 RVNLASGKVSRLT-FEG--EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTR----------------L 394 (448)
T ss_pred EEECCCCCEEEEe-cCC--CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCC----------------C
Confidence 6677766543332 222 22345789999998876654 34 4555677776554332111 1
Q ss_pred eeEEEEcCCCcEEEEE
Q 021036 301 CLGMAVSPGNLVVAMV 316 (318)
Q Consensus 301 v~~v~~sp~~~~l~~~ 316 (318)
....+|+|||++|+..
T Consensus 395 d~~ps~spdG~~I~~~ 410 (448)
T PRK04792 395 DESPSVAPNGTMVIYS 410 (448)
T ss_pred CCCceECCCCCEEEEE
Confidence 1244789998887653
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1e-09 Score=93.62 Aligned_cols=202 Identities=15% Similarity=0.092 Sum_probs=129.2
Q ss_pred CcccccccCCCCCccEE-EEecCCCcEEEEEccCCccccccc-----------cccCCce---eEEeeecccc-------
Q 021036 71 KKYPVPQNGSSNWFSIL-AVGGRSGKVSLWRICVPKCYSVED-----------CKVPTTA---VLIGLFQAHN------- 128 (318)
Q Consensus 71 ~~~~v~~~~~s~~~~~l-~~g~~dg~i~iw~~~~~~~~~~~~-----------~~~~~~~---~~~~~~~~h~------- 128 (318)
+....+.+.++++|+|+ |+|...-.|++||+..-...-..+ ....... +.-+.+.-|.
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~ 129 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYR 129 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeee
Confidence 34445677778887875 667778899999997532100000 0000000 0001111121
Q ss_pred ----ccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccC
Q 021036 129 ----SWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQ 204 (318)
Q Consensus 129 ----~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 204 (318)
..-..+++ +.+..++++.| ....|.=++++.|.-+..+.... +.++++.++
T Consensus 130 ~RIP~~GRDm~y------~~~scDly~~g-sg~evYRlNLEqGrfL~P~~~~~--------------~~lN~v~in---- 184 (703)
T KOG2321|consen 130 TRIPKFGRDMKY------HKPSCDLYLVG-SGSEVYRLNLEQGRFLNPFETDS--------------GELNVVSIN---- 184 (703)
T ss_pred eecCcCCccccc------cCCCccEEEee-cCcceEEEEcccccccccccccc--------------ccceeeeec----
Confidence 12245555 23344444444 44578888999988776665433 378999998
Q ss_pred CCCceEEEEEeCCCcEEEeeeccCCCeeeEeeee------ecccC-----ceeEEEEcCCCCEEEEecCCCcEEEEEecC
Q 021036 205 SPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSY------NAHDQ-----VVTGLAWAFDGCCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 205 ~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~------~~h~~-----~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 273 (318)
+...+|++|+.+|.|..| |.++.. .+.++ ..|.+ .|+++.|+.+|-.+++|..+|.+.|||++.
T Consensus 185 -~~hgLla~Gt~~g~VEfw--DpR~ks--rv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa 259 (703)
T KOG2321|consen 185 -EEHGLLACGTEDGVVEFW--DPRDKS--RVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRA 259 (703)
T ss_pred -CccceEEecccCceEEEe--cchhhh--hheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEccc
Confidence 888999999999999999 555543 22222 22333 499999999999999999999999999999
Q ss_pred CceeeeecCCCCCCccccccCCCcceeeeEEEEcCC--CcEEEE
Q 021036 274 NSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPG--NLVVAM 315 (318)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~--~~~l~~ 315 (318)
.....+.-|.... +|..+.|.+. +..+++
T Consensus 260 ~~pl~~kdh~~e~-------------pi~~l~~~~~~~q~~v~S 290 (703)
T KOG2321|consen 260 SKPLLVKDHGYEL-------------PIKKLDWQDTDQQNKVVS 290 (703)
T ss_pred CCceeecccCCcc-------------ceeeecccccCCCceEEe
Confidence 8887777666554 7777777663 334444
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.5e-10 Score=96.87 Aligned_cols=161 Identities=19% Similarity=0.084 Sum_probs=105.3
Q ss_pred CcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCC---CcEEEEECCCccee
Q 021036 94 GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSD---GSVRIWDGYIQELQ 170 (318)
Q Consensus 94 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d---~~v~iwd~~~~~~~ 170 (318)
..|.+||....+ .+.+..+...+.+..| +++|+.|+..+.+ ..|.+||+.+++..
T Consensus 184 ~~l~i~D~~g~~---------------~~~lt~~~~~v~~p~w-------SpDg~~la~~s~~~~~~~l~~~dl~~g~~~ 241 (433)
T PRK04922 184 YALQVADSDGYN---------------PQTILRSAEPILSPAW-------SPDGKKLAYVSFERGRSAIYVQDLATGQRE 241 (433)
T ss_pred EEEEEECCCCCC---------------ceEeecCCCccccccC-------CCCCCEEEEEecCCCCcEEEEEECCCCCEE
Confidence 358888886432 2344556778999999 8999998887743 46999999877543
Q ss_pred eeecccccccccceeeeeecccceeEEEEeeccCCCCceEEE-EEeCCCc--EEEeeeccCCCeeeEeeeeecccCceeE
Q 021036 171 KSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLA-VGKGSGS--FDLWKCDISCNKFDKVGSYNAHDQVVTG 247 (318)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~-~~~~dg~--i~vw~~~~~~~~~~~~~~~~~h~~~v~~ 247 (318)
..... ........|+ |+|+.++ +.+.+|. |++| +..+++. ..+..+......
T Consensus 242 ~l~~~---------------~g~~~~~~~S-----pDG~~l~~~~s~~g~~~Iy~~--d~~~g~~---~~lt~~~~~~~~ 296 (433)
T PRK04922 242 LVASF---------------RGINGAPSFS-----PDGRRLALTLSRDGNPEIYVM--DLGSRQL---TRLTNHFGIDTE 296 (433)
T ss_pred EeccC---------------CCCccCceEC-----CCCCEEEEEEeCCCCceEEEE--ECCCCCe---EECccCCCCccc
Confidence 22111 1123467888 8998665 4556665 6666 6666653 234445555567
Q ss_pred EEEcCCCCEEEEecC-CCc--EEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 248 LAWAFDGCCLYSCSQ-DNF--VRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 248 ~~~~~~~~~l~s~~~-d~~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
.+|+|+|++|+..+. +|. |+++|+.++....+..... ....++|+|||++|+..
T Consensus 297 ~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~---------------~~~~~~~SpDG~~Ia~~ 353 (433)
T PRK04922 297 PTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGN---------------YNARASVSPDGKKIAMV 353 (433)
T ss_pred eEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCC---------------CccCEEECCCCCEEEEE
Confidence 899999998876653 444 6666666666554443221 23468999999998864
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.3e-09 Score=90.73 Aligned_cols=171 Identities=15% Similarity=0.029 Sum_probs=101.7
Q ss_pred EEecCCC--cEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeC-CC----cEE
Q 021036 88 AVGGRSG--KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSS-DG----SVR 160 (318)
Q Consensus 88 ~~g~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~-d~----~v~ 160 (318)
++...+| .|.+.++.+++ .+.+..+. +.....+| +|+|+.|+..+. +| .+.
T Consensus 203 y~S~~~g~~~I~~~~l~~g~------------~~~lt~~~---g~~~~p~w-------SPDG~~Laf~s~~~g~~di~~~ 260 (428)
T PRK01029 203 YVSYKLGVPKIFLGSLENPA------------GKKILALQ---GNQLMPTF-------SPRKKLLAFISDRYGNPDLFIQ 260 (428)
T ss_pred EEEccCCCceEEEEECCCCC------------ceEeecCC---CCccceEE-------CCCCCEEEEEECCCCCcceeEE
Confidence 3555554 46666777655 23333333 34456899 999988876553 23 344
Q ss_pred EEECCCc---ceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe-CCCcEEEeeeccCCCeeeEee
Q 021036 161 IWDGYIQ---ELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK-GSGSFDLWKCDISCNKFDKVG 236 (318)
Q Consensus 161 iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~ 236 (318)
+|++..+ +...... .........+|+ |||+.|+..+ .+|...+|.++...... ...
T Consensus 261 ~~~~~~g~~g~~~~lt~--------------~~~~~~~~p~wS-----PDG~~Laf~s~~~g~~~ly~~~~~~~g~-~~~ 320 (428)
T PRK01029 261 SFSLETGAIGKPRRLLN--------------EAFGTQGNPSFS-----PDGTRLVFVSNKDGRPRIYIMQIDPEGQ-SPR 320 (428)
T ss_pred EeecccCCCCcceEeec--------------CCCCCcCCeEEC-----CCCCEEEEEECCCCCceEEEEECccccc-ceE
Confidence 4666543 1111111 111123456888 9998777655 56766777555432110 122
Q ss_pred eeecccCceeEEEEcCCCCEEEEecCC---CcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEE
Q 021036 237 SYNAHDQVVTGLAWAFDGCCLYSCSQD---NFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVV 313 (318)
Q Consensus 237 ~~~~h~~~v~~~~~~~~~~~l~s~~~d---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l 313 (318)
.+..+...+....|+|||++|+..+.+ ..|.+||+.++....+..... .+....|+|||++|
T Consensus 321 ~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~---------------~~~~p~wSpDG~~L 385 (428)
T PRK01029 321 LLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPE---------------NKESPSWAIDSLHL 385 (428)
T ss_pred EeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCC---------------CccceEECCCCCEE
Confidence 333444566788999999988766543 469999998887765543221 34678999999987
Q ss_pred EE
Q 021036 314 AM 315 (318)
Q Consensus 314 ~~ 315 (318)
+.
T Consensus 386 ~f 387 (428)
T PRK01029 386 VY 387 (428)
T ss_pred EE
Confidence 74
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-10 Score=92.00 Aligned_cols=220 Identities=14% Similarity=0.152 Sum_probs=134.3
Q ss_pred cccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeecccc------------ccEEEEEeeeecCCC
Q 021036 76 PQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHN------------SWITSISLAVLSSDS 143 (318)
Q Consensus 76 ~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~v~~~~~~p~~~~~ 143 (318)
+++.+..-|.+|++|...|.|.++..+...-.. .+....+++|. ..|..+.|..
T Consensus 30 taVefd~tg~YlatGDkgGRVvlfer~~s~~ce---------ykf~teFQshe~EFDYLkSleieEKin~I~w~~----- 95 (460)
T COG5170 30 TAVEFDETGLYLATGDKGGRVVLFEREKSYGCE---------YKFFTEFQSHELEFDYLKSLEIEEKINAIEWFD----- 95 (460)
T ss_pred eEEEeccccceEeecCCCceEEEeecccccccc---------hhhhhhhcccccchhhhhhccHHHHhhheeeec-----
Confidence 333344445999999999999999876432100 22334455553 4688899821
Q ss_pred CCCCcEEEEEeCCCcEEEEECCCccee--ee------ec-cccccc--------------------ccceeeeeecccce
Q 021036 144 SNPQVLLVTGSSDGSVRIWDGYIQELQ--KS------AE-AHCVPF--------------------SLLKEVVTVNTVPI 194 (318)
Q Consensus 144 ~~~~~~l~s~~~d~~v~iwd~~~~~~~--~~------~~-~~~~~~--------------------~~~~~~~~~~~~~v 194 (318)
..+...++..+.|.+|++|.+...... .. +. ....|+ .+.+....+|..-+
T Consensus 96 ~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhi 175 (460)
T COG5170 96 DTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHI 175 (460)
T ss_pred CCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEe
Confidence 223356778889999999998754111 00 00 000000 00111235677788
Q ss_pred eEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecc-----cCceeEEEEcCC-CCEEEEecCCCcEEE
Q 021036 195 SVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAH-----DQVVTGLAWAFD-GCCLYSCSQDNFVRS 268 (318)
Q Consensus 195 ~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~~~-~~~l~s~~~d~~v~i 268 (318)
+++.++ .+...++++. |-.|.+|+++...+.+ .+...+.| ..-|++..|+|. ...+...+..|.|++
T Consensus 176 NSiS~N-----sD~et~lSaD-dLrINLWnl~i~D~sF-nIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl 248 (460)
T COG5170 176 NSISFN-----SDKETLLSAD-DLRINLWNLEIIDGSF-NIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKL 248 (460)
T ss_pred eeeeec-----Cchheeeecc-ceeeeeccccccCCce-EEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence 999998 7777777765 8899999888877765 33344444 356888999996 446667778899999
Q ss_pred EEecCCceeeeecCCCCCCcc--ccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 269 WIFHGNSLSQVSIPTNTPGLQ--SCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 269 wd~~~~~~~~~~~~~~~~~~~--~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
-|++...+..-+-......+. ...-+.+-...|..+.|+++|++|++-
T Consensus 249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsR 298 (460)
T COG5170 249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSR 298 (460)
T ss_pred hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEe
Confidence 999854432211110000000 011122344678899999999999863
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.1e-08 Score=87.39 Aligned_cols=174 Identities=10% Similarity=0.050 Sum_probs=113.0
Q ss_pred cEE-EEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEE
Q 021036 85 SIL-AVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWD 163 (318)
Q Consensus 85 ~~l-~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd 163 (318)
+++ ++-..+|.|.+.|..+. +.+..+......-..+.+ +++|+++++++.||.|.++|
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~--------------~~~~~i~~~~~~h~~~~~-------s~Dgr~~yv~~rdg~vsviD 64 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATN--------------KVVARIPTGGAPHAGLKF-------SPDGRYLYVANRDGTVSVID 64 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT---------------SEEEEEE-STTEEEEEE--------TT-SSEEEEEETTSEEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCC--------------eEEEEEcCCCCceeEEEe-------cCCCCEEEEEcCCCeEEEEE
Confidence 455 45667899999999884 455666654444445778 89999999999999999999
Q ss_pred CCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe-CCCcEEEeeeccCCCeeeEeeeeec--
Q 021036 164 GYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK-GSGSFDLWKCDISCNKFDKVGSYNA-- 240 (318)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~-- 240 (318)
+.+++.+.++.... ....++++ ++|+++++++ ..+.+.++ |.++.+ ++..+..
T Consensus 65 ~~~~~~v~~i~~G~---------------~~~~i~~s-----~DG~~~~v~n~~~~~v~v~--D~~tle--~v~~I~~~~ 120 (369)
T PF02239_consen 65 LATGKVVATIKVGG---------------NPRGIAVS-----PDGKYVYVANYEPGTVSVI--DAETLE--PVKTIPTGG 120 (369)
T ss_dssp TTSSSEEEEEE-SS---------------EEEEEEE-------TTTEEEEEEEETTEEEEE--ETTT----EEEEEE--E
T ss_pred CCcccEEEEEecCC---------------CcceEEEc-----CCCCEEEEEecCCCceeEe--cccccc--ceeeccccc
Confidence 99999888876544 45688999 9999998876 68999998 666655 5555432
Q ss_pred -----ccCceeEEEEcCCCCEEE-EecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEE
Q 021036 241 -----HDQVVTGLAWAFDGCCLY-SCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVA 314 (318)
Q Consensus 241 -----h~~~v~~~~~~~~~~~l~-s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~ 314 (318)
....+.++..+|....++ +.-+-+.|.+.|...........-... .......|+|++++++
T Consensus 121 ~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g-------------~~~~D~~~dpdgry~~ 187 (369)
T PF02239_consen 121 MPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVG-------------RFPHDGGFDPDGRYFL 187 (369)
T ss_dssp E-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE---------------TTEEEEEE-TTSSEEE
T ss_pred ccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeeccc-------------ccccccccCcccceee
Confidence 234567888888877444 444558888888765432221111111 1346889999999876
Q ss_pred EE
Q 021036 315 MV 316 (318)
Q Consensus 315 ~~ 316 (318)
.+
T Consensus 188 va 189 (369)
T PF02239_consen 188 VA 189 (369)
T ss_dssp EE
T ss_pred ec
Confidence 64
|
... |
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.4e-08 Score=83.84 Aligned_cols=198 Identities=17% Similarity=0.129 Sum_probs=124.2
Q ss_pred eEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEEE
Q 021036 20 TVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLW 99 (318)
Q Consensus 20 ~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw 99 (318)
.++-..++.+.+.|..+.+.+..+......|.. +.++|++ +++++.+.||.|.++
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~-------~~~s~Dg------------------r~~yv~~rdg~vsvi 63 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAG-------LKFSPDG------------------RYLYVANRDGTVSVI 63 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEE-------EE-TT-S------------------SEEEEEETTSEEEEE
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeE-------EEecCCC------------------CEEEEEcCCCeEEEE
Confidence 456778999999999998877766542211111 4566666 899999999999999
Q ss_pred EccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEe-CCCcEEEEECCCcceeeeeccccc
Q 021036 100 RICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS-SDGSVRIWDGYIQELQKSAEAHCV 178 (318)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~~ 178 (318)
|+.+.+ .+++++.-. ...++++ +++|++++++. .++.+.++|.++.+.++.+.....
T Consensus 64 D~~~~~--------------~v~~i~~G~-~~~~i~~-------s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~ 121 (369)
T PF02239_consen 64 DLATGK--------------VVATIKVGG-NPRGIAV-------SPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGM 121 (369)
T ss_dssp ETTSSS--------------EEEEEE-SS-EEEEEEE---------TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE
T ss_pred ECCccc--------------EEEEEecCC-CcceEEE-------cCCCCEEEEEecCCCceeEeccccccceeecccccc
Confidence 999854 556665433 4578999 89999998776 579999999999998887765432
Q ss_pred ccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCC-CcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEE
Q 021036 179 PFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGS-GSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCL 257 (318)
Q Consensus 179 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 257 (318)
+... ....+..+..+ +....++..-.| +.|.+- |....+......+. -........|+|+++++
T Consensus 122 ~~~~-------~~~Rv~aIv~s-----~~~~~fVv~lkd~~~I~vV--dy~d~~~~~~~~i~-~g~~~~D~~~dpdgry~ 186 (369)
T PF02239_consen 122 PVDG-------PESRVAAIVAS-----PGRPEFVVNLKDTGEIWVV--DYSDPKNLKVTTIK-VGRFPHDGGFDPDGRYF 186 (369)
T ss_dssp -TTT-------S---EEEEEE------SSSSEEEEEETTTTEEEEE--ETTTSSCEEEEEEE---TTEEEEEE-TTSSEE
T ss_pred cccc-------cCCCceeEEec-----CCCCEEEEEEccCCeEEEE--Eeccccccceeeec-ccccccccccCccccee
Confidence 1100 12345666666 666656555544 655554 55444322233332 34456788999999976
Q ss_pred EE-ecCCCcEEEEEecCCceeee
Q 021036 258 YS-CSQDNFVRSWIFHGNSLSQV 279 (318)
Q Consensus 258 ~s-~~~d~~v~iwd~~~~~~~~~ 279 (318)
+. ......|-++|..++++...
T Consensus 187 ~va~~~sn~i~viD~~~~k~v~~ 209 (369)
T PF02239_consen 187 LVAANGSNKIAVIDTKTGKLVAL 209 (369)
T ss_dssp EEEEGGGTEEEEEETTTTEEEEE
T ss_pred eecccccceeEEEeeccceEEEE
Confidence 55 45667899999988766543
|
... |
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.4e-09 Score=80.98 Aligned_cols=192 Identities=17% Similarity=0.109 Sum_probs=120.4
Q ss_pred CCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCcc-EEEEecCCCcEEEEEccC
Q 021036 25 KSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFS-ILAVGGRSGKVSLWRICV 103 (318)
Q Consensus 25 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~-~l~~g~~dg~i~iw~~~~ 103 (318)
..|.+.++++...+..+.... +-.... ....+.|.... + +|. .++-+..+|.|.++....
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~-q~~dts---~~~dm~w~~~~----~-----------~g~~~l~~a~a~G~i~~~r~~~ 104 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTL-QCTDTS---TEFDMLWRIRE----T-----------DGDFNLLDAHARGQIQLYRNDE 104 (339)
T ss_pred eccceEEEeecccccCcccee-eeeccc---ccceeeeeecc----C-----------CccceeeeccccceEEEEeecc
Confidence 345677777777666552221 111111 13336776433 1 123 566677889999988764
Q ss_pred CccccccccccCCceeEEeeecccc---ccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceee--eeccccc
Q 021036 104 PKCYSVEDCKVPTTAVLIGLFQAHN---SWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQK--SAEAHCV 178 (318)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~--~~~~~~~ 178 (318)
.+.. -.++.+.... ....++.| ++.+..++++..+|.+.+-+.......+ ..+
T Consensus 105 ~~ss-----------~~L~~ls~~ki~~~~~lslD~-------~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk---- 162 (339)
T KOG0280|consen 105 DESS-----------VHLRGLSSKKISVVEALSLDI-------STSGTKIFVSDSRGSISGVYETEMVLEKVQTWK---- 162 (339)
T ss_pred ceee-----------eeecccchhhhhheeeeEEEe-------eccCceEEEEcCCCcEEEEecceeeeeeccccc----
Confidence 3210 1111122111 12457788 7788889999999998855444333222 333
Q ss_pred ccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcC-CCCEE
Q 021036 179 PFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAF-DGCCL 257 (318)
Q Consensus 179 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l 257 (318)
.|..+.....|+. .+.+++++|+.|+.+..||++... ++ .-..-+.|...|.++.-+| .+.+|
T Consensus 163 ----------~He~E~Wta~f~~----~~pnlvytGgDD~~l~~~D~R~p~-~~-i~~n~kvH~~GV~SI~ss~~~~~~I 226 (339)
T KOG0280|consen 163 ----------VHEFEAWTAKFSD----KEPNLVYTGGDDGSLSCWDIRIPK-TF-IWHNSKVHTSGVVSIYSSPPKPTYI 226 (339)
T ss_pred ----------ccceeeeeeeccc----CCCceEEecCCCceEEEEEecCCc-ce-eeecceeeecceEEEecCCCCCceE
Confidence 3455777777772 456899999999999999654322 32 2222456889999998877 57899
Q ss_pred EEecCCCcEEEEEecC
Q 021036 258 YSCSQDNFVRSWIFHG 273 (318)
Q Consensus 258 ~s~~~d~~v~iwd~~~ 273 (318)
++|+.|-.|++||.++
T Consensus 227 ~TGsYDe~i~~~DtRn 242 (339)
T KOG0280|consen 227 ATGSYDECIRVLDTRN 242 (339)
T ss_pred EEeccccceeeeehhc
Confidence 9999999999999985
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.1e-11 Score=111.91 Aligned_cols=175 Identities=17% Similarity=0.253 Sum_probs=129.5
Q ss_pred eEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEEE
Q 021036 20 TVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLW 99 (318)
Q Consensus 20 ~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw 99 (318)
.+||++||.+++|..-.++.+.... .. +. ..|+.+.|+.+|+.+..+..||.+.+|
T Consensus 2223 Yltgs~dgsv~~~~w~~~~~v~~~r-------------------t~----g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~ 2278 (2439)
T KOG1064|consen 2223 YLTGSQDGSVRMFEWGHGQQVVCFR-------------------TA----GN-SRVTRSRFNHQGNKFGIVDGDGDLSLW 2278 (2439)
T ss_pred EEecCCCceEEEEeccCCCeEEEee-------------------cc----Cc-chhhhhhhcccCCceeeeccCCceeec
Confidence 4899999999999876655422221 11 11 445666667777999999999999999
Q ss_pred EccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEe---CCCcEEEEECCCcceeeeeccc
Q 021036 100 RICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS---SDGSVRIWDGYIQELQKSAEAH 176 (318)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~---~d~~v~iwd~~~~~~~~~~~~~ 176 (318)
... .++....+.|....+..+| -. ..+++++ .++.+.+||..-......
T Consensus 2279 q~~---------------pk~~~s~qchnk~~~Df~F-------i~--s~~~tag~s~d~~n~~lwDtl~~~~~s~---- 2330 (2439)
T KOG1064|consen 2279 QAS---------------PKPYTSWQCHNKALSDFRF-------IG--SLLATAGRSSDNRNVCLWDTLLPPMNSL---- 2330 (2439)
T ss_pred ccC---------------CcceeccccCCccccceee-------ee--hhhhccccCCCCCcccchhcccCcccce----
Confidence 987 2466778899999999999 33 4577764 468999999763322111
Q ss_pred ccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCE
Q 021036 177 CVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCC 256 (318)
Q Consensus 177 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 256 (318)
+...|.+.++++++. |...+|++|+.+|.|++| |++..+ ..++++. ++ ...+
T Consensus 2331 ---------v~~~H~~gaT~l~~~-----P~~qllisggr~G~v~l~--D~rqrq--l~h~~~~---------~~-~~~~ 2382 (2439)
T KOG1064|consen 2331 ---------VHTCHDGGATVLAYA-----PKHQLLISGGRKGEVCLF--DIRQRQ--LRHTFQA---------LD-TREY 2382 (2439)
T ss_pred ---------eeeecCCCceEEEEc-----CcceEEEecCCcCcEEEe--ehHHHH--HHHHhhh---------hh-hhhe
Confidence 115677899999999 999999999999999999 555544 3333332 34 4669
Q ss_pred EEEecCCCcEEEEEecCC
Q 021036 257 LYSCSQDNFVRSWIFHGN 274 (318)
Q Consensus 257 l~s~~~d~~v~iwd~~~~ 274 (318)
|++|+..|.++||++..-
T Consensus 2383 f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2383 FVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred eeccCcccceEEEEcccc
Confidence 999999999999999764
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.8e-09 Score=81.18 Aligned_cols=179 Identities=12% Similarity=-0.023 Sum_probs=117.1
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEEC
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDG 164 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~ 164 (318)
.+||.|+..|...+|...+.+.. .+....|...|.-+.= . .....-+.-++.|.++++.++
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h-------------~~~cd~snn~v~~~~r---~---cd~~~~~~i~sndht~k~~~~ 145 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGH-------------LYQCDVSNNDVTLVKR---Y---CDLKFPLNIASNDHTGKTMVV 145 (344)
T ss_pred cEEEeccccceeeeecccCcccc-------------eeeecccccchhhhhh---h---cccccceeeccCCcceeEEEE
Confidence 68999999999999999876532 2222233332221110 0 111123666788899999988
Q ss_pred CCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCc
Q 021036 165 YIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQV 244 (318)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~ 244 (318)
..+.......... -.+.++.++ ++++++++.+....|..|.+|-.......+ .....+..
T Consensus 146 ~~~s~~~~~h~~~--------------~~~ns~~~s-----nd~~~~~~Vgds~~Vf~y~id~~sey~~~~-~~a~t~D~ 205 (344)
T KOG4532|consen 146 SGDSNKFAVHNQN--------------LTQNSLHYS-----NDPSWGSSVGDSRRVFRYAIDDESEYIENI-YEAPTSDH 205 (344)
T ss_pred ecCcccceeeccc--------------cceeeeEEc-----CCCceEEEecCCCcceEEEeCCccceeeee-EecccCCC
Confidence 7654333222111 147788998 999999999999999999877655543221 22333444
Q ss_pred eeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCc
Q 021036 245 VTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNL 311 (318)
Q Consensus 245 v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 311 (318)
-.+..|+.....+|++.+||++.|||++.......... ..-+.|.+.++.+.|++-|.
T Consensus 206 gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s---------strp~hnGa~R~c~Fsl~g~ 263 (344)
T KOG4532|consen 206 GFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEIS---------STRPHHNGAFRVCRFSLYGL 263 (344)
T ss_pred ceeeeeccCcceEEEEecCCcEEEEEecccccchhhhc---------ccCCCCCCceEEEEecCCCc
Confidence 56788999888999999999999999987332211111 12234788999999998554
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.2e-09 Score=91.57 Aligned_cols=149 Identities=15% Similarity=0.079 Sum_probs=96.9
Q ss_pred eeeccccccEEEEEeeeecCCCCCCCcEEEEEeCC---CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEE
Q 021036 122 GLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSD---GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLS 198 (318)
Q Consensus 122 ~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 198 (318)
+.+..+...+....| +++|++|+.++.+ ..|++||+.+++...... ....+..++
T Consensus 183 ~~l~~~~~~~~~p~~-------Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~---------------~~~~~~~~~ 240 (417)
T TIGR02800 183 QTITRSREPILSPAW-------SPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS---------------FPGMNGAPA 240 (417)
T ss_pred EEeecCCCceecccC-------CCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec---------------CCCCccceE
Confidence 334456667889999 9999999887654 479999998875433211 112345678
Q ss_pred EeeccCCCCceEEE-EEeCCCc--EEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecC-CC--cEEEEEec
Q 021036 199 LILPVQSPRLMLLA-VGKGSGS--FDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQ-DN--FVRSWIFH 272 (318)
Q Consensus 199 ~~~~~~~~~~~~l~-~~~~dg~--i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d~--~v~iwd~~ 272 (318)
|+ |+|+.|+ +.+.++. |++| +..++... .+..+........|+|+|+.|+..+. ++ .|+++|+.
T Consensus 241 ~s-----pDg~~l~~~~~~~~~~~i~~~--d~~~~~~~---~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~ 310 (417)
T TIGR02800 241 FS-----PDGSKLAVSLSKDGNPDIYVM--DLDGKQLT---RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDAD 310 (417)
T ss_pred EC-----CCCCEEEEEECCCCCccEEEE--ECCCCCEE---ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECC
Confidence 88 8998665 4555555 5555 66555432 23334444557789999998876554 33 57777877
Q ss_pred CCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 273 GNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
++....+..... ....++|+|||++|+.+.
T Consensus 311 ~~~~~~l~~~~~---------------~~~~~~~spdg~~i~~~~ 340 (417)
T TIGR02800 311 GGEVRRLTFRGG---------------YNASPSWSPDGDLIAFVH 340 (417)
T ss_pred CCCEEEeecCCC---------------CccCeEECCCCCEEEEEE
Confidence 766554433322 446789999999887653
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.5e-09 Score=96.21 Aligned_cols=182 Identities=13% Similarity=0.090 Sum_probs=127.7
Q ss_pred ccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeecccccc-----EEEEEeeeecCCCCCCCcE
Q 021036 75 VPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSW-----ITSISLAVLSSDSSNPQVL 149 (318)
Q Consensus 75 v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-----v~~~~~~p~~~~~~~~~~~ 149 (318)
+....+.-+.+.++.+..+..+.|||...+.. ....+. ... ..-+-. +.+.-+
T Consensus 90 i~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~--------------~~~i~~-~er~~l~~~~~~g~-------s~~~~~ 147 (967)
T KOG0974|consen 90 IFGAKLFEENKKIALVTSRNSLLIRDSKNSSV--------------LSKIQS-DERCTLYSSLIIGD-------SAEELY 147 (967)
T ss_pred ccccchhhhcceEEEEEcCceEEEEecccCce--------------ehhcCC-CceEEEEeEEEEec-------cCcEEE
Confidence 44455555678889999999999999987542 222221 111 111222 556678
Q ss_pred EEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCC
Q 021036 150 LVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISC 229 (318)
Q Consensus 150 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~ 229 (318)
+++|+.-+.|.+|+........ ...+|.+.+..+.++ .+|.++++.+.|.++++|+++ +
T Consensus 148 i~~gsv~~~iivW~~~~dn~p~--------------~l~GHeG~iF~i~~s-----~dg~~i~s~SdDRsiRlW~i~--s 206 (967)
T KOG0974|consen 148 IASGSVFGEIIVWKPHEDNKPI--------------RLKGHEGSIFSIVTS-----LDGRYIASVSDDRSIRLWPID--S 206 (967)
T ss_pred EEeccccccEEEEeccccCCcc--------------eecccCCceEEEEEc-----cCCcEEEEEecCcceeeeecc--c
Confidence 9999999999999987222211 235667799999999 899999999999999999654 4
Q ss_pred CeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCC
Q 021036 230 NKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPG 309 (318)
Q Consensus 230 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 309 (318)
.+. ......+|+..|+.+.|.|. .++++++|.+.++|+.....+..+..|.. ..+..++..++
T Consensus 207 ~~~-~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~~y~~h~g--------------~~iw~~~~~~~ 269 (967)
T KOG0974|consen 207 REV-LGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQLEVYDEHSG--------------KGIWKIAVPIG 269 (967)
T ss_pred ccc-cCcccccccceeEEEEeccc--eeEEeccceEEEEEecccceehhhhhhhh--------------cceeEEEEcCC
Confidence 432 22456789999999999999 89999999999999776555543333322 25667777766
Q ss_pred CcEEEEE
Q 021036 310 NLVVAMV 316 (318)
Q Consensus 310 ~~~l~~~ 316 (318)
.-.++|+
T Consensus 270 ~~~~vT~ 276 (967)
T KOG0974|consen 270 VIIKVTG 276 (967)
T ss_pred ceEEEee
Confidence 6665554
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.9e-07 Score=77.86 Aligned_cols=196 Identities=13% Similarity=0.072 Sum_probs=120.1
Q ss_pred cCCCCCccEEEEec-CCCcEEEEEccCCccccccccccCCceeEEeee----------ccccccEEEEEeeeecCCCCCC
Q 021036 78 NGSSNWFSILAVGG-RSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLF----------QAHNSWITSISLAVLSSDSSNP 146 (318)
Q Consensus 78 ~~~s~~~~~l~~g~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~----------~~h~~~v~~~~~~p~~~~~~~~ 146 (318)
+++++++++|+++. .+|.|.++++.....+ ......+ +.......++.+ +|+
T Consensus 92 i~~~~~g~~l~vany~~g~v~v~~l~~~g~l----------~~~~~~~~~~g~g~~~~rq~~~h~H~v~~-------~pd 154 (345)
T PF10282_consen 92 IAVDPDGRFLYVANYGGGSVSVFPLDDDGSL----------GEVVQTVRHEGSGPNPDRQEGPHPHQVVF-------SPD 154 (345)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTSEE----------EEEEEEEESEEEESSTTTTSSTCEEEEEE--------TT
T ss_pred EEEecCCCEEEEEEccCCeEEEEEccCCccc----------ceeeeecccCCCCCcccccccccceeEEE-------CCC
Confidence 33444447777765 5899999999873221 1111111 112345788999 899
Q ss_pred CcEEEEEeC-CCcEEEEECCCcce-eeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe-CCCcEEEe
Q 021036 147 QVLLVTGSS-DGSVRIWDGYIQEL-QKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK-GSGSFDLW 223 (318)
Q Consensus 147 ~~~l~s~~~-d~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~-~dg~i~vw 223 (318)
++++++... ...|.+|++..... +.... .+........+.+.|+ |+++++++.+ .++.|.+|
T Consensus 155 g~~v~v~dlG~D~v~~~~~~~~~~~l~~~~----------~~~~~~G~GPRh~~f~-----pdg~~~Yv~~e~s~~v~v~ 219 (345)
T PF10282_consen 155 GRFVYVPDLGADRVYVYDIDDDTGKLTPVD----------SIKVPPGSGPRHLAFS-----PDGKYAYVVNELSNTVSVF 219 (345)
T ss_dssp SSEEEEEETTTTEEEEEEE-TTS-TEEEEE----------EEECSTTSSEEEEEE------TTSSEEEEEETTTTEEEEE
T ss_pred CCEEEEEecCCCEEEEEEEeCCCceEEEee----------ccccccCCCCcEEEEc-----CCcCEEEEecCCCCcEEEE
Confidence 998888754 45899999876541 21100 0111223467899999 8988776654 67889999
Q ss_pred eeccCCCeeeEeeeeecc------cCceeEEEEcCCCCEEEEe-cCCCcEEEEEec--CCceeeeecCCCCCCccccccC
Q 021036 224 KCDISCNKFDKVGSYNAH------DQVVTGLAWAFDGCCLYSC-SQDNFVRSWIFH--GNSLSQVSIPTNTPGLQSCTDL 294 (318)
Q Consensus 224 ~~~~~~~~~~~~~~~~~h------~~~v~~~~~~~~~~~l~s~-~~d~~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~ 294 (318)
+++...+.++.+...... ......+.++|+|++|+++ ...+.|.+|++. ++.+..+..-+..
T Consensus 220 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~--------- 290 (345)
T PF10282_consen 220 DYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG--------- 290 (345)
T ss_dssp EEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES---------
T ss_pred eecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC---------
Confidence 877556665555544321 1256789999999987665 456789999994 3455433322110
Q ss_pred CCcceeeeEEEEcCCCcEEEEEe
Q 021036 295 PDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 295 ~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
....+.++++|+|++|+++.
T Consensus 291 ---G~~Pr~~~~s~~g~~l~Va~ 310 (345)
T PF10282_consen 291 ---GKFPRHFAFSPDGRYLYVAN 310 (345)
T ss_dssp ---SSSEEEEEE-TTSSEEEEEE
T ss_pred ---CCCccEEEEeCCCCEEEEEe
Confidence 01358999999999998764
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.2e-07 Score=77.72 Aligned_cols=240 Identities=18% Similarity=0.148 Sum_probs=135.8
Q ss_pred EEeeCC----CceeEeecC--CCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecC--
Q 021036 21 VAASKS----KGNSITKIP--SNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGR-- 92 (318)
Q Consensus 21 ~t~s~d----~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~-- 92 (318)
+.|+.+ +.|.++++. +++. ..+.. ..... ...-++++|++ ++|++...
T Consensus 3 ~vgsy~~~~~~gI~~~~~d~~~g~l-~~~~~--~~~~~---~Ps~l~~~~~~------------------~~LY~~~e~~ 58 (345)
T PF10282_consen 3 YVGSYTNGKGGGIYVFRFDEETGTL-TLVQT--VAEGE---NPSWLAVSPDG------------------RRLYVVNEGS 58 (345)
T ss_dssp EEEECCSSSSTEEEEEEEETTTTEE-EEEEE--EEESS---SECCEEE-TTS------------------SEEEEEETTS
T ss_pred EEEcCCCCCCCcEEEEEEcCCCCCc-eEeee--ecCCC---CCceEEEEeCC------------------CEEEEEEccc
Confidence 445554 799999883 3332 22221 11111 12237777777 78777755
Q ss_pred --CCcEEEEEccCC-ccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeC-CCcEEEEECCC-c
Q 021036 93 --SGKVSLWRICVP-KCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSS-DGSVRIWDGYI-Q 167 (318)
Q Consensus 93 --dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~-d~~v~iwd~~~-~ 167 (318)
+|.|..|++... .. .+.+.........-..+++ ++++++|+++.. +|.|.++++.. +
T Consensus 59 ~~~g~v~~~~i~~~~g~-----------L~~~~~~~~~g~~p~~i~~-------~~~g~~l~vany~~g~v~v~~l~~~g 120 (345)
T PF10282_consen 59 GDSGGVSSYRIDPDTGT-----------LTLLNSVPSGGSSPCHIAV-------DPDGRFLYVANYGGGSVSVFPLDDDG 120 (345)
T ss_dssp STTTEEEEEEEETTTTE-----------EEEEEEEEESSSCEEEEEE-------CTTSSEEEEEETTTTEEEEEEECTTS
T ss_pred cCCCCEEEEEECCCcce-----------eEEeeeeccCCCCcEEEEE-------ecCCCEEEEEEccCCeEEEEEccCCc
Confidence 578999998763 11 2344444423344456888 889999888875 79999999986 3
Q ss_pred ceeeeec--cccc-ccccceeeeeecccceeEEEEeeccCCCCceEEEEEe-CCCcEEEeeeccCCCeeeEeeeee-ccc
Q 021036 168 ELQKSAE--AHCV-PFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK-GSGSFDLWKCDISCNKFDKVGSYN-AHD 242 (318)
Q Consensus 168 ~~~~~~~--~~~~-~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~-~h~ 242 (318)
....... .+.. .... .........++.++ |+++++++.. ....|.+|+++...++......+. ...
T Consensus 121 ~l~~~~~~~~~~g~g~~~----~rq~~~h~H~v~~~-----pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G 191 (345)
T PF10282_consen 121 SLGEVVQTVRHEGSGPNP----DRQEGPHPHQVVFS-----PDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPG 191 (345)
T ss_dssp EEEEEEEEEESEEEESST----TTTSSTCEEEEEE------TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTT
T ss_pred ccceeeeecccCCCCCcc----cccccccceeEEEC-----CCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccC
Confidence 3322211 0000 0000 00012245678898 9998877765 456799997776664443433333 234
Q ss_pred CceeEEEEcCCCCEEEE-ecCCCcEEEEEec--CCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 243 QVVTGLAWAFDGCCLYS-CSQDNFVRSWIFH--GNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 243 ~~v~~~~~~~~~~~l~s-~~~d~~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
.....+.|+|+++++.. .-.+++|.++++. .+.+..+..-+..+ .... .......++++|||++|.+..
T Consensus 192 ~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~-----~~~~-~~~~~~~i~ispdg~~lyvsn 263 (345)
T PF10282_consen 192 SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLP-----EGFT-GENAPAEIAISPDGRFLYVSN 263 (345)
T ss_dssp SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCE-----TTSC-SSSSEEEEEE-TTSSEEEEEE
T ss_pred CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecc-----cccc-ccCCceeEEEecCCCEEEEEe
Confidence 55789999999997654 4567889999998 44333222111000 0000 112567899999999987754
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.2e-08 Score=88.37 Aligned_cols=149 Identities=16% Similarity=0.100 Sum_probs=95.3
Q ss_pred eeccccccEEEEEeeeecCCCCCCCcEEEEEeCC---CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEE
Q 021036 123 LFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSD---GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSL 199 (318)
Q Consensus 123 ~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 199 (318)
.+..+...+....| +++|+.|+..+.+ ..|.+||+.+++....... ........|
T Consensus 193 ~l~~~~~~~~~p~w-------SpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~---------------~g~~~~~~~ 250 (430)
T PRK00178 193 TLLQSREPILSPRW-------SPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF---------------EGLNGAPAW 250 (430)
T ss_pred EEecCCCceeeeeE-------CCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC---------------CCCcCCeEE
Confidence 34456678899999 8999988776643 3688999987754332111 112345788
Q ss_pred eeccCCCCceEEE-EEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecC-CC--cEEEEEecCCc
Q 021036 200 ILPVQSPRLMLLA-VGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQ-DN--FVRSWIFHGNS 275 (318)
Q Consensus 200 ~~~~~~~~~~~l~-~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d~--~v~iwd~~~~~ 275 (318)
+ |+|+.|+ +.+.+|.-.+|-++..+++.. .+..+........|+|+|+.|+..+. ++ .|+++|+.++.
T Consensus 251 S-----pDG~~la~~~~~~g~~~Iy~~d~~~~~~~---~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~ 322 (430)
T PRK00178 251 S-----PDGSKLAFVLSKDGNPEIYVMDLASRQLS---RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR 322 (430)
T ss_pred C-----CCCCEEEEEEccCCCceEEEEECCCCCeE---EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 8 9998776 455566544443366666532 33445555667899999997765543 33 57777777776
Q ss_pred eeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 276 LSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
...+..... .....+|+|||++|+..
T Consensus 323 ~~~lt~~~~---------------~~~~~~~Spdg~~i~~~ 348 (430)
T PRK00178 323 AERVTFVGN---------------YNARPRLSADGKTLVMV 348 (430)
T ss_pred EEEeecCCC---------------CccceEECCCCCEEEEE
Confidence 655442221 12456899999988765
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2e-08 Score=88.67 Aligned_cols=149 Identities=18% Similarity=0.168 Sum_probs=95.9
Q ss_pred eeccccccEEEEEeeeecCCCCCCCcEEEEEeC-CC--cEEEEECCCcceeeeecccccccccceeeeeecccceeEEEE
Q 021036 123 LFQAHNSWITSISLAVLSSDSSNPQVLLVTGSS-DG--SVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSL 199 (318)
Q Consensus 123 ~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~-d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 199 (318)
.+..+...+.+..| +|+|+.|+..+. ++ .|.+||+.+++....... ........|
T Consensus 212 ~l~~~~~~~~~p~w-------SPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~---------------~g~~~~~~w 269 (448)
T PRK04792 212 MLLRSPEPLMSPAW-------SPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF---------------PGINGAPRF 269 (448)
T ss_pred EeecCCCcccCceE-------CCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC---------------CCCcCCeeE
Confidence 34455678889999 999998887654 33 588889887754322111 112235678
Q ss_pred eeccCCCCceEEEE-EeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecC-CC--cEEEEEecCCc
Q 021036 200 ILPVQSPRLMLLAV-GKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQ-DN--FVRSWIFHGNS 275 (318)
Q Consensus 200 ~~~~~~~~~~~l~~-~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d~--~v~iwd~~~~~ 275 (318)
+ |+|+.|+. .+.+|...||-++..+++.+ .+..+.......+|+|||++|+..+. ++ .|.++|+.+++
T Consensus 270 S-----PDG~~La~~~~~~g~~~Iy~~dl~tg~~~---~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~ 341 (448)
T PRK04792 270 S-----PDGKKLALVLSKDGQPEIYVVDIATKALT---RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK 341 (448)
T ss_pred C-----CCCCEEEEEEeCCCCeEEEEEECCCCCeE---ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 8 99987764 56777766665577666532 33444555677899999997765543 34 46666777766
Q ss_pred eeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 276 LSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
...+..... .....+|+|||++|+..
T Consensus 342 ~~~Lt~~g~---------------~~~~~~~SpDG~~l~~~ 367 (448)
T PRK04792 342 VSRLTFEGE---------------QNLGGSITPDGRSMIMV 367 (448)
T ss_pred EEEEecCCC---------------CCcCeeECCCCCEEEEE
Confidence 655443221 22456899999888764
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.7e-07 Score=75.13 Aligned_cols=234 Identities=14% Similarity=0.114 Sum_probs=134.9
Q ss_pred CCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecC---CCcEEEEEcc
Q 021036 26 SKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGR---SGKVSLWRIC 102 (318)
Q Consensus 26 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~---dg~i~iw~~~ 102 (318)
++.|.+|++.+.+-...... .....+. .+-++|+|+. +.|.++-. +|.|--|.++
T Consensus 15 s~gI~v~~ld~~~g~l~~~~-~v~~~~n---ptyl~~~~~~------------------~~LY~v~~~~~~ggvaay~iD 72 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQ-LVAELGN---PTYLAVNPDQ------------------RHLYVVNEPGEEGGVAAYRID 72 (346)
T ss_pred CCceEEEEEeCcccccchhh-hccccCC---CceEEECCCC------------------CEEEEEEecCCcCcEEEEEEc
Confidence 78999998875322111111 1111222 2338899988 88888754 4677777776
Q ss_pred C--CccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCC-CcEEEEECCC-cceeeee--ccc
Q 021036 103 V--PKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSD-GSVRIWDGYI-QELQKSA--EAH 176 (318)
Q Consensus 103 ~--~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d-~~v~iwd~~~-~~~~~~~--~~~ 176 (318)
. |+ ...+........+-..++. ++++++++++... |.|.++-++. |...... ..|
T Consensus 73 ~~~G~------------Lt~ln~~~~~g~~p~yvsv-------d~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h 133 (346)
T COG2706 73 PDDGR------------LTFLNRQTLPGSPPCYVSV-------DEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKH 133 (346)
T ss_pred CCCCe------------EEEeeccccCCCCCeEEEE-------CCCCCEEEEEEccCceEEEEEcccCCccccceeeeec
Confidence 4 33 1222222222233377888 8999999999864 8999999875 4332221 111
Q ss_pred ccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe-CCCcEEEeeeccCCCeeeEeeeee-cccCceeEEEEcCCC
Q 021036 177 CVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK-GSGSFDLWKCDISCNKFDKVGSYN-AHDQVVTGLAWAFDG 254 (318)
Q Consensus 177 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~ 254 (318)
..+. +..+.. ..-+....+. |+++++++.+ ..-.|.+|+++ .++..+..... .-......|.|+|++
T Consensus 134 ~g~~-p~~rQ~---~~h~H~a~~t-----P~~~~l~v~DLG~Dri~~y~~~--dg~L~~~~~~~v~~G~GPRHi~FHpn~ 202 (346)
T COG2706 134 TGSG-PHERQE---SPHVHSANFT-----PDGRYLVVPDLGTDRIFLYDLD--DGKLTPADPAEVKPGAGPRHIVFHPNG 202 (346)
T ss_pred CCCC-CCcccc---CCccceeeeC-----CCCCEEEEeecCCceEEEEEcc--cCccccccccccCCCCCcceEEEcCCC
Confidence 1100 000000 1115566777 9998888876 45568898654 55433322221 234456889999999
Q ss_pred CEEEEe-cCCCcEEEEEecC--CceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 255 CCLYSC-SQDNFVRSWIFHG--NSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 255 ~~l~s~-~~d~~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
++.... -.+++|-+|.... ++...++.....+ .++.+ ......+..+|||++|.+..
T Consensus 203 k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP-----~dF~g-~~~~aaIhis~dGrFLYasN 262 (346)
T COG2706 203 KYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLP-----EDFTG-TNWAAAIHISPDGRFLYASN 262 (346)
T ss_pred cEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCc-----cccCC-CCceeEEEECCCCCEEEEec
Confidence 976544 4688999999987 4554444332211 11111 12456788888888887654
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.8e-08 Score=85.65 Aligned_cols=135 Identities=14% Similarity=0.018 Sum_probs=81.6
Q ss_pred ccEEEEEeeeecCCCCCCCcEEEEEe-CCCcEEEEE--CCC-cceeeeecccccccccceeeeeecccceeEEEEeeccC
Q 021036 129 SWITSISLAVLSSDSSNPQVLLVTGS-SDGSVRIWD--GYI-QELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQ 204 (318)
Q Consensus 129 ~~v~~~~~~p~~~~~~~~~~~l~s~~-~d~~v~iwd--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 204 (318)
......+| +|+|+.|+..+ .+|...+|. +.. +.....+.. ....+....|+
T Consensus 281 ~~~~~p~w-------SPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~--------------~~~~~~~p~wS---- 335 (428)
T PRK01029 281 GTQGNPSF-------SPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK--------------KYRNSSCPAWS---- 335 (428)
T ss_pred CCcCCeEE-------CCCCCEEEEEECCCCCceEEEEECcccccceEEecc--------------CCCCccceeEC----
Confidence 34467899 89998777665 466555554 332 221221211 12245677888
Q ss_pred CCCceEEEEEeCC-C--cEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecC---CCcEEEEEecCCceee
Q 021036 205 SPRLMLLAVGKGS-G--SFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQ---DNFVRSWIFHGNSLSQ 278 (318)
Q Consensus 205 ~~~~~~l~~~~~d-g--~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~---d~~v~iwd~~~~~~~~ 278 (318)
|+|+.|+..+.+ | .|.+| +..+++.+. +......+....|+|||++|+..+. ...|.++|+.+++...
T Consensus 336 -PDG~~Laf~~~~~g~~~I~v~--dl~~g~~~~---Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~ 409 (428)
T PRK01029 336 -PDGKKIAFCSVIKGVRQICVY--DLATGRDYQ---LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRK 409 (428)
T ss_pred -CCCCEEEEEEcCCCCcEEEEE--ECCCCCeEE---ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence 999988776543 3 46677 666665333 2222345677899999997764432 3568888988877665
Q ss_pred eecCCCCCCccccccCCCcceeeeEEEEcCC
Q 021036 279 VSIPTNTPGLQSCTDLPDAFVSCLGMAVSPG 309 (318)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 309 (318)
+.... +.+...+|+|-
T Consensus 410 Lt~~~---------------g~~~~p~Ws~~ 425 (428)
T PRK01029 410 IVIGS---------------GEKRFPSWGAF 425 (428)
T ss_pred eecCC---------------CcccCceecCC
Confidence 54322 13466788874
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.1e-09 Score=95.91 Aligned_cols=169 Identities=12% Similarity=0.138 Sum_probs=120.8
Q ss_pred eeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCcccccccc-ccCCceeEEeeeccccccEEEEEe
Q 021036 58 LAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDC-KVPTTAVLIGLFQAHNSWITSISL 136 (318)
Q Consensus 58 ~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~~h~~~v~~~~~ 136 (318)
.|++|+... .++|+|+.||.+++-.+.+...--...+ ....+...-+++.+|.+.|.-+.|
T Consensus 18 ~c~~WNke~------------------gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTW 79 (1189)
T KOG2041|consen 18 HCAEWNKES------------------GYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTW 79 (1189)
T ss_pred EEEEEcccC------------------CeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEe
Confidence 368898887 8999999999999998876432110000 011122334578899999999999
Q ss_pred eeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeC
Q 021036 137 AVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKG 216 (318)
Q Consensus 137 ~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~ 216 (318)
+.+.+.|.|+..+|.|.+|-+-.|+-...+.... .++.|.+++|+ .+|..++..-.
T Consensus 80 -------Ne~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnR------------nKSvV~SmsWn-----~dG~kIcIvYe 135 (1189)
T KOG2041|consen 80 -------NENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNR------------NKSVVVSMSWN-----LDGTKICIVYE 135 (1189)
T ss_pred -------ccccccccccCCCceEEEEeeecccHHHHHhhCc------------CccEEEEEEEc-----CCCcEEEEEEc
Confidence 7888899999999999999998886554432222 24478899998 89999999999
Q ss_pred CCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecC
Q 021036 217 SGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 217 dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 273 (318)
||.|-+=.+| ..+ .--..+++ .....+.|++|.+.++.+-.+|.+.+||..+
T Consensus 136 DGavIVGsvd--GNR-IwgKeLkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnqg 187 (1189)
T KOG2041|consen 136 DGAVIVGSVD--GNR-IWGKELKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQG 187 (1189)
T ss_pred cCCEEEEeec--cce-ecchhcch--heccceeecccHHHHHhhhcCCcEEEecccc
Confidence 9988774322 221 11122332 2234688999998888888899999999764
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.2e-08 Score=85.46 Aligned_cols=184 Identities=14% Similarity=0.203 Sum_probs=120.8
Q ss_pred eeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEE--EecC--------
Q 021036 23 ASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILA--VGGR-------- 92 (318)
Q Consensus 23 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~--~g~~-------- 92 (318)
.+.-..+|||.+.....-+.+..+.|-..+. ..+.|++.+ ..+|+ +...
T Consensus 190 kGaPa~vri~~~~~~~~~~~~a~ksFFkadk----vqm~WN~~g-----------------t~LLvLastdVDktn~SYY 248 (566)
T KOG2315|consen 190 KGAPASVRIYKYPEEGQHQPVANKSFFKADK----VQMKWNKLG-----------------TALLVLASTDVDKTNASYY 248 (566)
T ss_pred CCCCcEEEEeccccccccchhhhccccccce----eEEEeccCC-----------------ceEEEEEEEeecCCCcccc
Confidence 4556788999887655555555444433332 238999887 12222 2222
Q ss_pred -CCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEE--eCCCcEEEEECCCcce
Q 021036 93 -SGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTG--SSDGSVRIWDGYIQEL 169 (318)
Q Consensus 93 -dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~--~~d~~v~iwd~~~~~~ 169 (318)
+.++++.+++... ....+ ...++|+++.| +++++-|+++ -.-..+.|+|++. ..
T Consensus 249 GEq~Lyll~t~g~s--------------~~V~L-~k~GPVhdv~W-------~~s~~EF~VvyGfMPAkvtifnlr~-~~ 305 (566)
T KOG2315|consen 249 GEQTLYLLATQGES--------------VSVPL-LKEGPVHDVTW-------SPSGREFAVVYGFMPAKVTIFNLRG-KP 305 (566)
T ss_pred ccceEEEEEecCce--------------EEEec-CCCCCceEEEE-------CCCCCEEEEEEecccceEEEEcCCC-CE
Confidence 3357777776322 11122 23789999999 7888666654 3557899999873 34
Q ss_pred eeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeC---CCcEEEeeeccCCCeeeEeeeeecccCcee
Q 021036 170 QKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKG---SGSFDLWKCDISCNKFDKVGSYNAHDQVVT 246 (318)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~---dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~ 246 (318)
+..+. .++-+++-|+ |.|++++.++. -|.|.+| |..+.+ .+..+..-.. +
T Consensus 306 v~df~----------------egpRN~~~fn-----p~g~ii~lAGFGNL~G~mEvw--Dv~n~K--~i~~~~a~~t--t 358 (566)
T KOG2315|consen 306 VFDFP----------------EGPRNTAFFN-----PHGNIILLAGFGNLPGDMEVW--DVPNRK--LIAKFKAANT--T 358 (566)
T ss_pred eEeCC----------------CCCccceEEC-----CCCCEEEEeecCCCCCceEEE--eccchh--hccccccCCc--e
Confidence 44332 3366788998 99999998875 5789999 555544 6767665443 4
Q ss_pred EEEEcCCCCEEEEec------CCCcEEEEEecCCcee
Q 021036 247 GLAWAFDGCCLYSCS------QDNFVRSWIFHGNSLS 277 (318)
Q Consensus 247 ~~~~~~~~~~l~s~~------~d~~v~iwd~~~~~~~ 277 (318)
-..|+|||++|+|+. .|+.++||+..+..+.
T Consensus 359 ~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~ 395 (566)
T KOG2315|consen 359 VFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLH 395 (566)
T ss_pred EEEEcCCCcEEEEEeccccEEecCCeEEEEecCceee
Confidence 578999999998886 4788999999765443
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.8e-08 Score=81.05 Aligned_cols=102 Identities=24% Similarity=0.312 Sum_probs=79.7
Q ss_pred EEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECC
Q 021036 86 ILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGY 165 (318)
Q Consensus 86 ~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~ 165 (318)
+.+.|...|.|..-.+.... ..++.++.+|.+.+.+++| .+...+|.+|..|..+.+||+.
T Consensus 167 ~~fvGd~~gqvt~lr~~~~~------------~~~i~~~~~h~~~~~~l~W-------d~~~~~LfSg~~d~~vi~wdig 227 (404)
T KOG1409|consen 167 YAFVGDHSGQITMLKLEQNG------------CQLITTFNGHTGEVTCLKW-------DPGQRLLFSGASDHSVIMWDIG 227 (404)
T ss_pred EEEecccccceEEEEEeecC------------CceEEEEcCcccceEEEEE-------cCCCcEEEeccccCceEEEecc
Confidence 66777888888777776543 4577889999999999999 8888999999999999999997
Q ss_pred Ccceee-eecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeee
Q 021036 166 IQELQK-SAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKC 225 (318)
Q Consensus 166 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~ 225 (318)
..+-.. .+ .+|...|..++.. +.-+.+.+++.||.|-+|++
T Consensus 228 g~~g~~~el--------------~gh~~kV~~l~~~-----~~t~~l~S~~edg~i~~w~m 269 (404)
T KOG1409|consen 228 GRKGTAYEL--------------QGHNDKVQALSYA-----QHTRQLISCGEDGGIVVWNM 269 (404)
T ss_pred CCcceeeee--------------ccchhhhhhhhhh-----hhheeeeeccCCCeEEEEec
Confidence 543222 22 2344467777776 67788999999999999983
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.2e-07 Score=79.68 Aligned_cols=168 Identities=15% Similarity=0.158 Sum_probs=121.4
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCC-cEEEE
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDG-SVRIW 162 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~-~v~iw 162 (318)
|.+++..+. |...|.+...+- . .--+|...|.-..+ ..+++-++.|..|| .+-++
T Consensus 332 Gd~ia~VSR-GkaFi~~~~~~~--------------~--iqv~~~~~VrY~r~-------~~~~e~~vigt~dgD~l~iy 387 (668)
T COG4946 332 GDYIALVSR-GKAFIMRPWDGY--------------S--IQVGKKGGVRYRRI-------QVDPEGDVIGTNDGDKLGIY 387 (668)
T ss_pred CcEEEEEec-CcEEEECCCCCe--------------e--EEcCCCCceEEEEE-------ccCCcceEEeccCCceEEEE
Confidence 678887764 667777665432 1 12356777877777 66777899999999 99999
Q ss_pred ECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeeccc
Q 021036 163 DGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHD 242 (318)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~ 242 (318)
|.++++....... -+.|.++..+ ++|+.++.+.....+-+. |+.++..+.+. +...
T Consensus 388 d~~~~e~kr~e~~---------------lg~I~av~vs-----~dGK~~vvaNdr~el~vi--didngnv~~id--kS~~ 443 (668)
T COG4946 388 DKDGGEVKRIEKD---------------LGNIEAVKVS-----PDGKKVVVANDRFELWVI--DIDNGNVRLID--KSEY 443 (668)
T ss_pred ecCCceEEEeeCC---------------ccceEEEEEc-----CCCcEEEEEcCceEEEEE--EecCCCeeEec--cccc
Confidence 9998865544332 2368889998 999999999776666555 66677643432 3345
Q ss_pred CceeEEEEcCCCCEEEEecCC----CcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEE
Q 021036 243 QVVTGLAWAFDGCCLYSCSQD----NFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVA 314 (318)
Q Consensus 243 ~~v~~~~~~~~~~~l~s~~~d----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~ 314 (318)
+-|+.++|+|+++++|-+=-+ ..|+++|+.+++...+...... =.+-+|.||+++|.
T Consensus 444 ~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~---------------DfsPaFD~d~ryLY 504 (668)
T COG4946 444 GLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAY---------------DFSPAFDPDGRYLY 504 (668)
T ss_pred ceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCccc---------------ccCcccCCCCcEEE
Confidence 789999999999999987555 4699999999888766544332 25678888888764
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.3e-09 Score=89.74 Aligned_cols=218 Identities=13% Similarity=0.142 Sum_probs=140.2
Q ss_pred CCCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEec
Q 021036 12 MKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGG 91 (318)
Q Consensus 12 ~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~ 91 (318)
+.+...+++++++.|+.+.-.|+..+.-...+.+... ..........++-+|.. .+.+++|+
T Consensus 240 v~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~-~~~~~v~L~~Ia~~P~n-----------------t~~faVgG 301 (559)
T KOG1334|consen 240 VEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREA-DEKERVGLYTIAVDPRN-----------------TNEFAVGG 301 (559)
T ss_pred ecCCCCCcccccccccceeeeeeccCCccceeeeecc-CCccceeeeeEecCCCC-----------------ccccccCC
Confidence 4566678899999999999999887655444444321 11111222346666666 46899999
Q ss_pred CCCcEEEEEccCCccccccccccCCceeEEeee------ccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECC
Q 021036 92 RSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLF------QAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGY 165 (318)
Q Consensus 92 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~------~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~ 165 (318)
.|.-+++||...-..... ...+..+ ....-.|++++| +.++.-|+++-.|-.|+++.-.
T Consensus 302 ~dqf~RvYD~R~~~~e~~--------n~~~~~f~p~hl~~d~~v~ITgl~Y-------sh~~sElLaSYnDe~IYLF~~~ 366 (559)
T KOG1334|consen 302 SDQFARVYDQRRIDKEEN--------NGVLDKFCPHHLVEDDPVNITGLVY-------SHDGSELLASYNDEDIYLFNKS 366 (559)
T ss_pred hhhhhhhhcccchhhccc--------cchhhhcCCccccccCcccceeEEe-------cCCccceeeeecccceEEeccc
Confidence 999999999864221000 0011111 122346899999 7666666777778889999433
Q ss_pred Ccce--eeeecccccccccceeeeeecc--cceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecc
Q 021036 166 IQEL--QKSAEAHCVPFSLLKEVVTVNT--VPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAH 241 (318)
Q Consensus 166 ~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h 241 (318)
-+.- ........ ...+.+..+|. ..|..+-|- -|..+++++|+.-|.|.+| +..+++ .+.-+++-
T Consensus 367 ~~~G~~p~~~s~~~---~~~k~vYKGHrN~~TVKgVNFf----GPrsEyVvSGSDCGhIFiW--~K~t~e--ii~~MegD 435 (559)
T KOG1334|consen 367 MGDGSEPDPSSPRE---QYVKRVYKGHRNSRTVKGVNFF----GPRSEYVVSGSDCGHIFIW--DKKTGE--IIRFMEGD 435 (559)
T ss_pred cccCCCCCCCcchh---hccchhhcccccccccceeeec----cCccceEEecCccceEEEE--ecchhH--HHHHhhcc
Confidence 2211 10000000 00111122332 235555553 3788999999999999999 666766 56666776
Q ss_pred cCceeEEEEcCCCCEEEEecCCCcEEEEEecC
Q 021036 242 DQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 242 ~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 273 (318)
..-|.|+.=+|.-..||+++-|..|+||...+
T Consensus 436 r~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 436 RHVVNCLEPHPHLPVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred cceEeccCCCCCCchhhccCCccceeeecCCc
Confidence 66899999999999999999999999998743
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.7e-09 Score=89.57 Aligned_cols=177 Identities=15% Similarity=0.130 Sum_probs=122.2
Q ss_pred CCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCC
Q 021036 68 LSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQ 147 (318)
Q Consensus 68 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~ 147 (318)
+.+|...|..+..-.+.+-+++++.|.+|++|.++.... .-.+....-+++.|..+|+++.| -.+-
T Consensus 731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD-------~~~tsaCQfTY~aHkk~i~~igf-------L~~l 796 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGD-------EIGTSACQFTYQAHKKPIHDIGF-------LADL 796 (1034)
T ss_pred ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccC-------ccccceeeeEhhhccCcccceee-------eecc
Confidence 557888888888777888999999999999999974210 00112345578899999999999 6666
Q ss_pred cEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceE-EEEEeCCCcEEEeeec
Q 021036 148 VLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLML-LAVGKGSGSFDLWKCD 226 (318)
Q Consensus 148 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~-l~~~~~dg~i~vw~~~ 226 (318)
++++++ ||.+.+||.-.+..+..+.-... .+....|.++-- -+..+ ++.++...+|+++ |
T Consensus 797 r~i~Sc--D~giHlWDPFigr~Laq~~dapk---------~~a~~~ikcl~n------v~~~iliAgcsaeSTVKl~--D 857 (1034)
T KOG4190|consen 797 RSIASC--DGGIHLWDPFIGRLLAQMEDAPK---------EGAGGNIKCLEN------VDRHILIAGCSAESTVKLF--D 857 (1034)
T ss_pred ceeeec--cCcceeecccccchhHhhhcCcc---------cCCCceeEeccc------Ccchheeeeccchhhheee--e
Confidence 666654 89999999887766543221110 111222333211 12333 4444788999999 6
Q ss_pred cCCCeeeEeeee---ecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCcee
Q 021036 227 ISCNKFDKVGSY---NAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLS 277 (318)
Q Consensus 227 ~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 277 (318)
.+...+...... .+..+.+.+++..+.|++++.+-..|+|.+.|.++++..
T Consensus 858 aRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vI 911 (1034)
T KOG4190|consen 858 ARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVI 911 (1034)
T ss_pred cccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCcee
Confidence 777665332222 234466889999999999999999999999999998864
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.7e-09 Score=85.02 Aligned_cols=155 Identities=17% Similarity=0.191 Sum_probs=107.2
Q ss_pred EEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCc
Q 021036 88 AVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQ 167 (318)
Q Consensus 88 ~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 167 (318)
++.+.+..|-+-+++++. .+.|. ..+.|.++.| ...+.++..|+..|.|...|++.+
T Consensus 228 fs~G~sqqv~L~nvetg~---------------~qsf~-sksDVfAlQf-------~~s~nLv~~GcRngeI~~iDLR~r 284 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGH---------------QQSFQ-SKSDVFALQF-------AGSDNLVFNGCRNGEIFVIDLRCR 284 (425)
T ss_pred ecccccceeEEEEeeccc---------------ccccc-cchhHHHHHh-------cccCCeeEecccCCcEEEEEeeec
Confidence 444556677888888753 23344 4567899999 777889999999999999999865
Q ss_pred ceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeE
Q 021036 168 ELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTG 247 (318)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~ 247 (318)
..-..... ..-.|+..|+++..- .-++.+|++.+.+|+|++||+.+...+ .-+.++.+|...-.-
T Consensus 285 nqG~~~~a----------~rlyh~Ssvtslq~L----q~s~q~LmaS~M~gkikLyD~R~~K~~-~~V~qYeGHvN~~a~ 349 (425)
T KOG2695|consen 285 NQGNGWCA----------QRLYHDSSVTSLQIL----QFSQQKLMASDMTGKIKLYDLRATKCK-KSVMQYEGHVNLSAY 349 (425)
T ss_pred ccCCCcce----------EEEEcCcchhhhhhh----ccccceEeeccCcCceeEeeehhhhcc-cceeeeecccccccc
Confidence 11110010 112356678888765 126788999999999999965443322 247788888754433
Q ss_pred E--EEcCCCCEEEEecCCCcEEEEEecCCceeeee
Q 021036 248 L--AWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVS 280 (318)
Q Consensus 248 ~--~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 280 (318)
+ ...+....++++++|...|||.++.+.+....
T Consensus 350 l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 350 LPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI 384 (425)
T ss_pred cccccccccceEEEccCeeEEEEEecccCceeecc
Confidence 3 33455668899999999999999988876543
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.9e-09 Score=99.76 Aligned_cols=162 Identities=20% Similarity=0.170 Sum_probs=122.4
Q ss_pred CCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeec-cccccEEEEEeeeecCCCCCCCc
Q 021036 70 SKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQ-AHNSWITSISLAVLSSDSSNPQV 148 (318)
Q Consensus 70 ~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~~~~~~ 148 (318)
.+...|.++.-.|.-.+.++|+.||.|++|....++ .+..++ .-.+.|+.+.| +.+|.
T Consensus 2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~--------------~v~~~rt~g~s~vtr~~f-------~~qGn 2264 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQ--------------QVVCFRTAGNSRVTRSRF-------NHQGN 2264 (2439)
T ss_pred cccCceeeecCCCCCceEEecCCCceEEEEeccCCC--------------eEEEeeccCcchhhhhhh-------cccCC
Confidence 455568888888888999999999999999998754 333332 22388999999 88999
Q ss_pred EEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe---CCCcEEEeee
Q 021036 149 LLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK---GSGSFDLWKC 225 (318)
Q Consensus 149 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~---~dg~i~vw~~ 225 (318)
.+..+..||.+.+|... .+....... |....++..|- +..+++++ .++.+.+||.
T Consensus 2265 k~~i~d~dg~l~l~q~~-pk~~~s~qc--------------hnk~~~Df~Fi-------~s~~~tag~s~d~~n~~lwDt 2322 (2439)
T KOG1064|consen 2265 KFGIVDGDGDLSLWQAS-PKPYTSWQC--------------HNKALSDFRFI-------GSLLATAGRSSDNRNVCLWDT 2322 (2439)
T ss_pred ceeeeccCCceeecccC-Ccceecccc--------------CCccccceeee-------ehhhhccccCCCCCcccchhc
Confidence 99999999999999886 222222222 33356666665 25666654 6788999975
Q ss_pred ccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCcee
Q 021036 226 DISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLS 277 (318)
Q Consensus 226 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 277 (318)
....... .+. ..|.+.++++++-|....|++|+.+|.|.+||++.+++.
T Consensus 2323 l~~~~~s-~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~ 2371 (2439)
T KOG1064|consen 2323 LLPPMNS-LVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLR 2371 (2439)
T ss_pred ccCcccc-eee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHH
Confidence 4444432 444 679999999999999999999999999999999875553
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.6e-09 Score=82.65 Aligned_cols=163 Identities=13% Similarity=0.145 Sum_probs=99.7
Q ss_pred CCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcE
Q 021036 70 SKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVL 149 (318)
Q Consensus 70 ~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~ 149 (318)
.|..+-.+-+.+--++-++++..||.+.+++.+.-. +....+..-...-.+.++ ...++.
T Consensus 87 ~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~-------------~~~~~i~~~~~~~as~~~-------~~~~~~ 146 (319)
T KOG4714|consen 87 KNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDL-------------ALMSRIPSIHSGSASRKI-------CRHGNS 146 (319)
T ss_pred ccCCCCCcccccccCCceEecCCCceEEEEechHHH-------------hhhhhcccccccccccce-------eecccE
Confidence 344444444444556889999999999999987511 111111111111122233 233444
Q ss_pred EEEEeC-----CCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEee
Q 021036 150 LVTGSS-----DGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWK 224 (318)
Q Consensus 150 l~s~~~-----d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~ 224 (318)
+.++.. -+..+.|+++..+.+ .... . ....|.+++-+ |....++++|+.||.+-+||
T Consensus 147 i~s~~~g~~n~~d~~~a~~~~p~~t~---~~~~----------~-~~~~v~~l~~h----p~qq~~v~cgt~dg~~~l~d 208 (319)
T KOG4714|consen 147 ILSGGCGNWNAQDNFYANTLDPIKTL---IPSK----------K-ALDAVTALCSH----PAQQHLVCCGTDDGIVGLWD 208 (319)
T ss_pred EecCCcceEeeccceeeecccccccc---cccc----------c-ccccchhhhCC----cccccEEEEecCCCeEEEEE
Confidence 443321 123445554432211 1110 0 01137788887 34567888999999999995
Q ss_pred eccCCCeeeEeeeeecccCceeEEEEcC-CCCEEEEecCCCcEEEEEecC
Q 021036 225 CDISCNKFDKVGSYNAHDQVVTGLAWAF-DGCCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 225 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~ 273 (318)
.+.... ++..++.|+.+++.+.|+| ++..|+++++||.+..||..+
T Consensus 209 --~rn~~~-p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 209 --ARNVAM-PVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred --cccccc-hHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 445432 6677889999999999999 477899999999999999875
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.2e-09 Score=58.52 Aligned_cols=38 Identities=32% Similarity=0.589 Sum_probs=36.0
Q ss_pred eEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEE
Q 021036 233 DKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWI 270 (318)
Q Consensus 233 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd 270 (318)
+++.++.+|...|++++|+|++.+|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 37788999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.9e-06 Score=70.10 Aligned_cols=226 Identities=11% Similarity=-0.030 Sum_probs=131.6
Q ss_pred CceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEe-c---------CCCcE
Q 021036 27 KGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVG-G---------RSGKV 96 (318)
Q Consensus 27 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g-~---------~dg~i 96 (318)
+++.+.|..+.+.+..+.....++ . + .+|++ +.|+++ + .+..|
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~-------~-~spDg------------------~~lyva~~~~~R~~~G~~~d~V 79 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-P-------V-VASDG------------------SFFAHASTVYSRIARGKRTDYV 79 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-e-------e-ECCCC------------------CEEEEEeccccccccCCCCCEE
Confidence 889999999988776666533221 1 2 45555 665555 4 58899
Q ss_pred EEEEccCCccccccccccCCceeEEeeeccc-------cccEEEEEeeeecCCCCCCCcEEEEEe-C-CCcEEEEECCCc
Q 021036 97 SLWRICVPKCYSVEDCKVPTTAVLIGLFQAH-------NSWITSISLAVLSSDSSNPQVLLVTGS-S-DGSVRIWDGYIQ 167 (318)
Q Consensus 97 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h-------~~~v~~~~~~p~~~~~~~~~~~l~s~~-~-d~~v~iwd~~~~ 167 (318)
.+||..+.+ .+..+.-- ...-..+.+ +++|++|+... . +..|.+.|+.++
T Consensus 80 ~v~D~~t~~--------------~~~~i~~p~~p~~~~~~~~~~~~l-------s~dgk~l~V~n~~p~~~V~VvD~~~~ 138 (352)
T TIGR02658 80 EVIDPQTHL--------------PIADIELPEGPRFLVGTYPWMTSL-------TPDNKTLLFYQFSPSPAVGVVDLEGK 138 (352)
T ss_pred EEEECccCc--------------EEeEEccCCCchhhccCccceEEE-------CCCCCEEEEecCCCCCEEEEEECCCC
Confidence 999999855 33444321 122346777 89999888776 3 689999999999
Q ss_pred ceeeeecccccccccce------------eeee---ecc--cceeEEEE-e--------ec-cCCCCceEEEEEeCCCcE
Q 021036 168 ELQKSAEAHCVPFSLLK------------EVVT---VNT--VPISVLSL-I--------LP-VQSPRLMLLAVGKGSGSF 220 (318)
Q Consensus 168 ~~~~~~~~~~~~~~~~~------------~~~~---~~~--~~v~~l~~-~--------~~-~~~~~~~~l~~~~~dg~i 220 (318)
+.+..+.......-... .... ... .......+ . .+ ..+.+|..+++... |.|
T Consensus 139 kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V 217 (352)
T TIGR02658 139 AFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKI 217 (352)
T ss_pred cEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeE
Confidence 88877654332110000 0000 000 00111111 0 00 01127877777775 999
Q ss_pred EEeeeccCCCee-eEeeeeec-------ccCceeEEEEcCCCCEEEEec----------CCCcEEEEEecCCceeeeecC
Q 021036 221 DLWKCDISCNKF-DKVGSYNA-------HDQVVTGLAWAFDGCCLYSCS----------QDNFVRSWIFHGNSLSQVSIP 282 (318)
Q Consensus 221 ~vw~~~~~~~~~-~~~~~~~~-------h~~~v~~~~~~~~~~~l~s~~----------~d~~v~iwd~~~~~~~~~~~~ 282 (318)
++.|+....-.. .....+.. ..+.+.-++++|+++.++... ..+.|.++|..+++......-
T Consensus 218 ~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v 297 (352)
T TIGR02658 218 FQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL 297 (352)
T ss_pred EEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC
Confidence 998532211111 11111110 233445599999988776632 225799999998877654433
Q ss_pred CCCCCccccccCCCcceeeeEEEEcCCCc-EEEEE
Q 021036 283 TNTPGLQSCTDLPDAFVSCLGMAVSPGNL-VVAMV 316 (318)
Q Consensus 283 ~~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~l~~~ 316 (318)
.. .+.+++++||++ .|.+.
T Consensus 298 G~---------------~~~~iavS~Dgkp~lyvt 317 (352)
T TIGR02658 298 GH---------------EIDSINVSQDAKPLLYAL 317 (352)
T ss_pred CC---------------ceeeEEECCCCCeEEEEe
Confidence 32 668999999999 66543
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.5e-07 Score=78.34 Aligned_cols=96 Identities=11% Similarity=0.099 Sum_probs=65.9
Q ss_pred CCceEEEEEe---CCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEe---cCCCcEEEEEecCCceeee
Q 021036 206 PRLMLLAVGK---GSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSC---SQDNFVRSWIFHGNSLSQV 279 (318)
Q Consensus 206 ~~~~~l~~~~---~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~---~~d~~v~iwd~~~~~~~~~ 279 (318)
|.|+.|++-+ ...++.+|.+.....+++.+..+.. ...+.+.|+|.|++++.+ |..|.+.++|+....+...
T Consensus 455 P~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~ 532 (698)
T KOG2314|consen 455 PHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDT 532 (698)
T ss_pred cCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhc
Confidence 7888776654 3456888866655566666666654 456789999999988765 4578899999875232221
Q ss_pred ecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 280 SIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 280 ~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
.++... ..+.+.|.|.|+|++++.
T Consensus 533 -~~~eh~-------------~at~veWDPtGRYvvT~s 556 (698)
T KOG2314|consen 533 -ASPEHF-------------AATEVEWDPTGRYVVTSS 556 (698)
T ss_pred -cCcccc-------------ccccceECCCCCEEEEee
Confidence 112111 457899999999999863
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.9e-08 Score=80.12 Aligned_cols=159 Identities=13% Similarity=0.061 Sum_probs=99.0
Q ss_pred ccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeecc--ccccEEEEEeeeecCCCCCCCcEEEEEe
Q 021036 77 QNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQA--HNSWITSISLAVLSSDSSNPQVLLVTGS 154 (318)
Q Consensus 77 ~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~p~~~~~~~~~~~l~s~~ 154 (318)
....++++++||.+..+....++++..... ..++...... -...+..+.. .......-.++
T Consensus 67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~----------~~kl~~~~~v~~~~~ai~~~~~-------~~sv~v~dkag 129 (390)
T KOG3914|consen 67 LVLTSDSGRLVAVATSSKQRAVFDYRENPK----------GAKLLDVSCVPKRPTAISFIRE-------DTSVLVADKAG 129 (390)
T ss_pred ccccCCCceEEEEEeCCCceEEEEEecCCC----------cceeeeEeecccCcceeeeeec-------cceEEEEeecC
Confidence 344566679999998888877887765321 0122222211 1222333333 22222222233
Q ss_pred CCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeE
Q 021036 155 SDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDK 234 (318)
Q Consensus 155 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 234 (318)
....+.+|....+.+.. + -+|-.-++.++++ ||+++++++..|..|++=.+. ... .
T Consensus 130 D~~~~di~s~~~~~~~~-~--------------lGhvSml~dVavS-----~D~~~IitaDRDEkIRvs~yp--a~f--~ 185 (390)
T KOG3914|consen 130 DVYSFDILSADSGRCEP-I--------------LGHVSMLLDVAVS-----PDDQFIITADRDEKIRVSRYP--ATF--V 185 (390)
T ss_pred CceeeeeecccccCcch-h--------------hhhhhhhheeeec-----CCCCEEEEecCCceEEEEecC--ccc--c
Confidence 34455555554433222 1 2344578999999 999999999999999985322 211 2
Q ss_pred eee-eecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCcee
Q 021036 235 VGS-YNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLS 277 (318)
Q Consensus 235 ~~~-~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 277 (318)
+.. ..||+.-|..++.-++. .|+++|.|++|++||+.+++..
T Consensus 186 IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 186 IESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred hhhhccccHhheeeeeeccCc-eeeecCCCCcEEEEecccCCcc
Confidence 223 35799999999987765 4899999999999999987664
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.7e-07 Score=78.07 Aligned_cols=180 Identities=6% Similarity=-0.041 Sum_probs=107.6
Q ss_pred cccccCCCCCccE-EEEecC---CCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcE
Q 021036 74 PVPQNGSSNWFSI-LAVGGR---SGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVL 149 (318)
Q Consensus 74 ~v~~~~~s~~~~~-l~~g~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~ 149 (318)
....-.++|+|+. ++..+. +..|.++|+.+++ .+.+. ...+......| +|+|+.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~------------~~~lt---~~~g~~~~~~~-------SPDG~~ 246 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGK------------KEKIA---SSQGMLVVSDV-------SKDGSK 246 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCc------------EEEEe---cCCCcEEeeEE-------CCCCCE
Confidence 4556778888874 554333 3468888888765 22322 23445667789 899976
Q ss_pred EEE-EeCC--CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe-CCCcEEEeee
Q 021036 150 LVT-GSSD--GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK-GSGSFDLWKC 225 (318)
Q Consensus 150 l~s-~~~d--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~-~dg~i~vw~~ 225 (318)
|+. .+.+ ..|.++|+.+++... +.... .......|+ |||+.|+..+ ..+.-.||-+
T Consensus 247 la~~~~~~g~~~Iy~~dl~~g~~~~-LT~~~--------------~~d~~p~~S-----PDG~~I~F~Sdr~g~~~Iy~~ 306 (419)
T PRK04043 247 LLLTMAPKGQPDIYLYDTNTKTLTQ-ITNYP--------------GIDVNGNFV-----EDDKRIVFVSDRLGYPNIFMK 306 (419)
T ss_pred EEEEEccCCCcEEEEEECCCCcEEE-cccCC--------------CccCccEEC-----CCCCEEEEEECCCCCceEEEE
Confidence 654 4434 467777877665332 21111 012234687 8997665555 4565566666
Q ss_pred ccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCC---------CcEEEEEecCCceeeeecCCCCCCccccccCCC
Q 021036 226 DISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQD---------NFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPD 296 (318)
Q Consensus 226 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d---------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (318)
+..+++.+.+. ..+. ....|+|+|++|+..+.. ..|.+.|+.++....+....
T Consensus 307 dl~~g~~~rlt-~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~------------- 368 (419)
T PRK04043 307 KLNSGSVEQVV-FHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANG------------- 368 (419)
T ss_pred ECCCCCeEeCc-cCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCC-------------
Confidence 77776643332 1111 124899999988766543 36778888777665443321
Q ss_pred cceeeeEEEEcCCCcEEEEE
Q 021036 297 AFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 297 h~~~v~~v~~sp~~~~l~~~ 316 (318)
......|+|||++|+..
T Consensus 369 ---~~~~p~~SPDG~~I~f~ 385 (419)
T PRK04043 369 ---VNQFPRFSSDGGSIMFI 385 (419)
T ss_pred ---CcCCeEECCCCCEEEEE
Confidence 12357899999987754
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.3e-06 Score=66.61 Aligned_cols=195 Identities=12% Similarity=0.108 Sum_probs=128.9
Q ss_pred cccCCCCCccEEEEec-CCCcEEEEEccC-CccccccccccCCceeEEeeecccccc----------EEEEEeeeecCCC
Q 021036 76 PQNGSSNWFSILAVGG-RSGKVSLWRICV-PKCYSVEDCKVPTTAVLIGLFQAHNSW----------ITSISLAVLSSDS 143 (318)
Q Consensus 76 ~~~~~s~~~~~l~~g~-~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~----------v~~~~~~p~~~~~ 143 (318)
.-++++++|++|+++. ..|.|.++-++. |... ....+..|.+. +....+
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~------------~~v~~~~h~g~~p~~rQ~~~h~H~a~~------- 152 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQ------------PVVQVVKHTGSGPHERQESPHVHSANF------- 152 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccCCccc------------cceeeeecCCCCCCccccCCccceeee-------
Confidence 5567777788888875 467899999965 3321 11112223333 777888
Q ss_pred CCCCcEEEEEeCC-CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe-CCCcEE
Q 021036 144 SNPQVLLVTGSSD-GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK-GSGSFD 221 (318)
Q Consensus 144 ~~~~~~l~s~~~d-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~-~dg~i~ 221 (318)
.|++++|++.+-. -.|.+|++..|+....-... -......+.|.|+ |++++..+.+ -+++|-
T Consensus 153 tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~-----------v~~G~GPRHi~FH-----pn~k~aY~v~EL~stV~ 216 (346)
T COG2706 153 TPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAE-----------VKPGAGPRHIVFH-----PNGKYAYLVNELNSTVD 216 (346)
T ss_pred CCCCCEEEEeecCCceEEEEEcccCccccccccc-----------cCCCCCcceEEEc-----CCCcEEEEEeccCCEEE
Confidence 8999999998742 47999999976543321111 1224467899999 9999887766 589999
Q ss_pred EeeeccCCCeeeEeeeeec------ccCceeEEEEcCCCCEEEEecC-CCcEEEEEecC--CceeeeecCCCCCCccccc
Q 021036 222 LWKCDISCNKFDKVGSYNA------HDQVVTGLAWAFDGCCLYSCSQ-DNFVRSWIFHG--NSLSQVSIPTNTPGLQSCT 292 (318)
Q Consensus 222 vw~~~~~~~~~~~~~~~~~------h~~~v~~~~~~~~~~~l~s~~~-d~~v~iwd~~~--~~~~~~~~~~~~~~~~~~~ 292 (318)
+|.++...++++.++.+.. ......++..+++|++|.++.. ...|-+|.+.. +++..+...+..
T Consensus 217 v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~te------- 289 (346)
T COG2706 217 VLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTE------- 289 (346)
T ss_pred EEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccC-------
Confidence 9988877677766665431 2345678899999998877643 34677887754 444433333221
Q ss_pred cCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 293 DLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 293 ~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
....+...|+|+|++|++++
T Consensus 290 -----g~~PR~F~i~~~g~~Liaa~ 309 (346)
T COG2706 290 -----GQFPRDFNINPSGRFLIAAN 309 (346)
T ss_pred -----CcCCccceeCCCCCEEEEEc
Confidence 12347888888888887753
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.7e-06 Score=68.55 Aligned_cols=211 Identities=15% Similarity=0.189 Sum_probs=123.4
Q ss_pred CccceEEeeCCCceeEeecCCC--CCCCceec--chhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEec
Q 021036 16 NTHPTVAASKSKGNSITKIPSN--CCLPLITA--DQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGG 91 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~ 91 (318)
+...+++.-+|..|.|-...++ .++..... ..++.-. .++|+|++ .+||.+.
T Consensus 7 ~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWR------kl~WSpD~------------------tlLa~a~ 62 (282)
T PF15492_consen 7 SDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWR------KLAWSPDC------------------TLLAYAE 62 (282)
T ss_pred CCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchhe------EEEECCCC------------------cEEEEEc
Confidence 3455677777777777754431 11111111 1122212 38899988 9999999
Q ss_pred CCCcEEEEEccCCccccccccccCCceeEEeeec-cccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCc---
Q 021036 92 RSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQ-AHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQ--- 167 (318)
Q Consensus 92 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~--- 167 (318)
..|+|+++|+...+...+. +...+. .-...|..+.|.+... +..-...|++-..+|.++=|-+..+
T Consensus 63 S~G~i~vfdl~g~~lf~I~---------p~~~~~~d~~~Aiagl~Fl~~~~-s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q 132 (282)
T PF15492_consen 63 STGTIRVFDLMGSELFVIP---------PAMSFPGDLSDAIAGLIFLEYKK-SAQWSYELLVINYRGQLRSYLVSVGTNQ 132 (282)
T ss_pred CCCeEEEEecccceeEEcC---------cccccCCccccceeeeEeecccc-ccccceeEEEEeccceeeeEEEEcccCC
Confidence 9999999999864432110 001111 1245788888866653 2233446777778888887765332
Q ss_pred --ceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCC-----------cEEEeee-c-------
Q 021036 168 --ELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSG-----------SFDLWKC-D------- 226 (318)
Q Consensus 168 --~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg-----------~i~vw~~-~------- 226 (318)
+..+.+. ........|+++.++ |..++|++|+... -+.-|.+ +
T Consensus 133 ~y~e~hsfs-----------f~~~yp~Gi~~~vy~-----p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~ 196 (282)
T PF15492_consen 133 GYQENHSFS-----------FSSHYPHGINSAVYH-----PKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQ 196 (282)
T ss_pred cceeeEEEE-----------ecccCCCceeEEEEc-----CCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEE
Confidence 1222221 112235589999999 8878888776211 2445531 0
Q ss_pred -------cC----CCeeeEeeee------ecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCce
Q 021036 227 -------IS----CNKFDKVGSY------NAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSL 276 (318)
Q Consensus 227 -------~~----~~~~~~~~~~------~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 276 (318)
.. ...+..+..+ ......|..|..||||..||+...+|.|.+|++.+-.+
T Consensus 197 v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 197 VTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred ccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchh
Confidence 00 0000001111 11346789999999999999999999999999976333
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1e-07 Score=84.87 Aligned_cols=147 Identities=18% Similarity=0.132 Sum_probs=106.0
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEE
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWD 163 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd 163 (318)
++.|+-|+.+|.|++.+.+. .+ .....|+.. ..+|++++||+.||+|.|-.
T Consensus 49 ~~~~~~GtH~g~v~~~~~~~---------------~~-~~~~~~s~~-------------~~~Gey~asCS~DGkv~I~s 99 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQG---------------NP-KTNFDHSSS-------------ILEGEYVASCSDDGKVVIGS 99 (846)
T ss_pred cceeeeccccceEEEEecCC---------------cc-ccccccccc-------------ccCCceEEEecCCCcEEEee
Confidence 38999999999999999874 22 333334332 45789999999999999999
Q ss_pred CCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccC
Q 021036 164 GYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQ 243 (318)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~ 243 (318)
+.+.+...++..+. ++.+++++++......+.+++|+..| +.++.-+.-..+ ..+ .+..-.+
T Consensus 100 l~~~~~~~~~df~r---------------piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk-~~v-~l~~~eG 161 (846)
T KOG2066|consen 100 LFTDDEITQYDFKR---------------PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK-DSV-VLSEGEG 161 (846)
T ss_pred ccCCccceeEecCC---------------cceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc-cce-eeecCcc
Confidence 98887776655444 78899999332222367899999888 888732222222 122 3555678
Q ss_pred ceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeee
Q 021036 244 VVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVS 280 (318)
Q Consensus 244 ~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 280 (318)
+|.++.|. |+++|-++.+| |++||+..++.....
T Consensus 162 ~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i 195 (846)
T KOG2066|consen 162 PIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNI 195 (846)
T ss_pred ceEEEEec--CcEEEEecCCC-cEEEeccccceeecc
Confidence 99999997 88899988776 789999887765443
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.1e-06 Score=68.87 Aligned_cols=164 Identities=13% Similarity=-0.054 Sum_probs=104.2
Q ss_pred ccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEe-eeccccccEEEEEeeeecCCCCCCCcEEEEE
Q 021036 75 VPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIG-LFQAHNSWITSISLAVLSSDSSNPQVLLVTG 153 (318)
Q Consensus 75 v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~ 153 (318)
+..+.++++++++++.++...|..|.+..... ..++ ....-++.=.+..| +.....++++
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~se------------y~~~~~~a~t~D~gF~~S~-------s~~~~~FAv~ 221 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESE------------YIENIYEAPTSDHGFYNSF-------SENDLQFAVV 221 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccc------------eeeeeEecccCCCceeeee-------ccCcceEEEE
Confidence 34455555569999999999999999976431 1222 22333445577888 7888899999
Q ss_pred eCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCc--eEEEEEeCCCcEEEeeeccCCCe
Q 021036 154 SSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRL--MLLAVGKGSGSFDLWKCDISCNK 231 (318)
Q Consensus 154 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~--~~l~~~~~dg~i~vw~~~~~~~~ 231 (318)
..||++.|||++............. ..|.+.+..+.|+ +.| ++|+..-.-+.+.+- |+++.+
T Consensus 222 ~Qdg~~~I~DVR~~~tpm~~~sstr---------p~hnGa~R~c~Fs-----l~g~lDLLf~sEhfs~~hv~--D~R~~~ 285 (344)
T KOG4532|consen 222 FQDGTCAIYDVRNMATPMAEISSTR---------PHHNGAFRVCRFS-----LYGLLDLLFISEHFSRVHVV--DTRNYV 285 (344)
T ss_pred ecCCcEEEEEecccccchhhhcccC---------CCCCCceEEEEec-----CCCcceEEEEecCcceEEEE--EcccCc
Confidence 9999999999997654443332222 3477899999998 544 455555556677776 677665
Q ss_pred eeEeee-----eeccc-CceeEEEEcCCCCEEEEecCCCcEEEEEecCC
Q 021036 232 FDKVGS-----YNAHD-QVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGN 274 (318)
Q Consensus 232 ~~~~~~-----~~~h~-~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 274 (318)
-..+.. +..|. ..|..-.|+.++..+.+.+++ .+.-|++..+
T Consensus 286 ~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~sr 333 (344)
T KOG4532|consen 286 NHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILSR 333 (344)
T ss_pred eeeEEecCccccccccccccccccccCCCcccccccch-hhheeecccc
Confidence 222211 12233 347777788777655555443 3334554443
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.79 E-value=7.3e-06 Score=79.50 Aligned_cols=219 Identities=10% Similarity=-0.010 Sum_probs=120.4
Q ss_pred cccCCCCCccEEEEe-cCCCcEEEEEccCCccccccccccCCceeEEeeeccc-------cccEEEEEeeeecCCCCC-C
Q 021036 76 PQNGSSNWFSILAVG-GRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAH-------NSWITSISLAVLSSDSSN-P 146 (318)
Q Consensus 76 ~~~~~s~~~~~l~~g-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h-------~~~v~~~~~~p~~~~~~~-~ 146 (318)
..++++++++.|+++ ...+.|+++|..++........ +..-..+.+. -..-+.+++ ++ +
T Consensus 627 ~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~-----G~~g~~~~gg~~~~~~~ln~P~gVa~-------dp~~ 694 (1057)
T PLN02919 627 QGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGN-----GTKGSDYQGGKKGTSQVLNSPWDVCF-------EPVN 694 (1057)
T ss_pred cEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEecc-----CcccCCCCCChhhhHhhcCCCeEEEE-------ecCC
Confidence 445555555755554 4567899999876532110000 0000000000 112357888 66 6
Q ss_pred CcEEEEEeCCCcEEEEECCCcceeeeeccccccccccee-eeeecccceeEEEEeeccCCCCce-EEEEEeCCCcEEEee
Q 021036 147 QVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKE-VVTVNTVPISVLSLILPVQSPRLM-LLAVGKGSGSFDLWK 224 (318)
Q Consensus 147 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~l~~~~~~~~~~~~-~l~~~~~dg~i~vw~ 224 (318)
+.++++.+.++.|++||..++... .+.+.......... ...........++++ |+++ ++++-..++.|++||
T Consensus 695 g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavs-----pdG~~LYVADs~n~~Irv~D 768 (1057)
T PLN02919 695 EKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLS-----PDLKELYIADSESSSIRALD 768 (1057)
T ss_pred CeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEe-----CCCCEEEEEECCCCeEEEEE
Confidence 677788788899999999876532 22111100000000 000112245678999 8887 555556778999995
Q ss_pred eccCCCeeeEee-----------eeec--------ccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCC
Q 021036 225 CDISCNKFDKVG-----------SYNA--------HDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNT 285 (318)
Q Consensus 225 ~~~~~~~~~~~~-----------~~~~--------h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~ 285 (318)
+ .++....+. .+.. .-....+++++++|..+++-..++.|++||..++....+......
T Consensus 769 ~--~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~ 846 (1057)
T PLN02919 769 L--KTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKA 846 (1057)
T ss_pred C--CCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCc
Confidence 4 333211111 0000 011246889999999888889999999999988777655432211
Q ss_pred CCccccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 286 PGLQSCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 286 ~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
.. .......+......+|+++++|+++++
T Consensus 847 G~-~dG~~~~a~l~~P~GIavd~dG~lyVa 875 (1057)
T PLN02919 847 GF-KDGKALKAQLSEPAGLALGENGRLFVA 875 (1057)
T ss_pred CC-CCCcccccccCCceEEEEeCCCCEEEE
Confidence 00 000112334446789999999986654
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.2e-08 Score=85.54 Aligned_cols=201 Identities=16% Similarity=0.187 Sum_probs=124.4
Q ss_pred CCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCC
Q 021036 15 SNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSG 94 (318)
Q Consensus 15 ~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg 94 (318)
.|.+..+++|.|+++++|.+...-.....+ .+.| ..+.|..+|.++.+-.+-++++++ ||
T Consensus 745 dNENSFiSASkDKTVKLWSik~EgD~~~ts--------------aCQf----TY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 745 DNENSFISASKDKTVKLWSIKPEGDEIGTS--------------ACQF----TYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred ccccceeeccCCceEEEEEeccccCccccc--------------eeee----EhhhccCcccceeeeeccceeeec--cC
Confidence 456778999999999999886522111111 1333 234567777777777777777765 78
Q ss_pred cEEEEEccCCccccccccccCCceeEEeeeccc--cccEEEEEeeeecCCCCCCCcEEEEE-eCCCcEEEEECCCcceee
Q 021036 95 KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAH--NSWITSISLAVLSSDSSNPQVLLVTG-SSDGSVRIWDGYIQELQK 171 (318)
Q Consensus 95 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~p~~~~~~~~~~~l~s~-~~d~~v~iwd~~~~~~~~ 171 (318)
-|.+||.--++.+. .+..-..| ...|.|+. +-+..+++.+ +...+|+++|.+..+...
T Consensus 805 giHlWDPFigr~La-----------q~~dapk~~a~~~ikcl~--------nv~~~iliAgcsaeSTVKl~DaRsce~~~ 865 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLA-----------QMEDAPKEGAGGNIKCLE--------NVDRHILIAGCSAESTVKLFDARSCEWTC 865 (1034)
T ss_pred cceeecccccchhH-----------hhhcCcccCCCceeEecc--------cCcchheeeeccchhhheeeeccccccee
Confidence 99999987654321 00001112 22344432 2234445554 678999999999887665
Q ss_pred eecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEc
Q 021036 172 SAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWA 251 (318)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 251 (318)
.++.-.. .+..+.+.++++. +.|+.++.+-.+|.|.+. |.++++ .+..+..-......++ .
T Consensus 866 E~kVcna---------~~Pna~~R~iaVa-----~~GN~lAa~LSnGci~~L--DaR~G~--vINswrpmecdllqla-a 926 (1034)
T KOG4190|consen 866 ELKVCNA---------PGPNALTRAIAVA-----DKGNKLAAALSNGCIAIL--DARNGK--VINSWRPMECDLLQLA-A 926 (1034)
T ss_pred eEEeccC---------CCCchheeEEEec-----cCcchhhHHhcCCcEEEE--ecCCCc--eeccCCcccchhhhhc-C
Confidence 5543221 1234568899998 999999999999999997 788887 4544443333333332 2
Q ss_pred CCCCEEEEecCCCcEEE-EEecC
Q 021036 252 FDGCCLYSCSQDNFVRS-WIFHG 273 (318)
Q Consensus 252 ~~~~~l~s~~~d~~v~i-wd~~~ 273 (318)
|..+.++....|.++.+ |-...
T Consensus 927 psdq~L~~saldHslaVnWhald 949 (1034)
T KOG4190|consen 927 PSDQALAQSALDHSLAVNWHALD 949 (1034)
T ss_pred chhHHHHhhcccceeEeeehhcC
Confidence 34445666666777666 65443
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.8e-08 Score=55.48 Aligned_cols=38 Identities=42% Similarity=0.720 Sum_probs=35.4
Q ss_pred eEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEE
Q 021036 119 VLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWD 163 (318)
Q Consensus 119 ~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd 163 (318)
+++..+.+|.+.|++++| ++++.+|++++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~-------~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAW-------SPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEE-------ETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEE-------ecccccceeeCCCCEEEEEC
Confidence 467889999999999999 88899999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1e-06 Score=79.30 Aligned_cols=190 Identities=20% Similarity=0.224 Sum_probs=118.4
Q ss_pred CccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeecccccc-EEEEEeeeecCCCCCCCcEEEEEeCCC----
Q 021036 83 WFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSW-ITSISLAVLSSDSSNPQVLLVTGSSDG---- 157 (318)
Q Consensus 83 ~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~p~~~~~~~~~~~l~s~~~d~---- 157 (318)
++..++.|+.+|.|.+.+-. .+.++.++++... |..+-. .....+|++.+.|+
T Consensus 34 ~~~~vvigt~~G~V~~Ln~s---------------~~~~~~fqa~~~siv~~L~~-------~~~~~~L~sv~Ed~~~np 91 (933)
T KOG2114|consen 34 STGSVVIGTADGRVVILNSS---------------FQLIRGFQAYEQSIVQFLYI-------LNKQNFLFSVGEDEQGNP 91 (933)
T ss_pred CCceEEEeeccccEEEeccc---------------ceeeehheecchhhhhHhhc-------ccCceEEEEEeecCCCCc
Confidence 34899999999999888765 4556778888777 444443 44557888888765
Q ss_pred -cEEEEECCCcce---eeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeee
Q 021036 158 -SVRIWDGYIQEL---QKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFD 233 (318)
Q Consensus 158 -~v~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 233 (318)
.|++|+++.-+. ...+..|. ...........++++++++ .+-+.+++|-.+|.|..+.-|....+..
T Consensus 92 ~llkiw~lek~~~n~sP~c~~~~r----i~~~~np~~~~p~s~l~Vs-----~~l~~Iv~Gf~nG~V~~~~GDi~RDrgs 162 (933)
T KOG2114|consen 92 VLLKIWDLEKVDKNNSPQCLYEHR----IFTIKNPTNPSPASSLAVS-----EDLKTIVCGFTNGLVICYKGDILRDRGS 162 (933)
T ss_pred eEEEEecccccCCCCCcceeeeee----eeccCCCCCCCcceEEEEE-----ccccEEEEEecCcEEEEEcCcchhcccc
Confidence 489999874321 11110000 0000011235688999999 8889999999999999985444332221
Q ss_pred EeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCc-E
Q 021036 234 KVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNL-V 312 (318)
Q Consensus 234 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~ 312 (318)
...-......+|+++.+..++..++-...-..|.+|.+.++. ..... +..|+..+++.+|++... +
T Consensus 163 r~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~-p~~~~------------ld~~G~~lnCss~~~~t~qf 229 (933)
T KOG2114|consen 163 RQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT-PSLKV------------LDNNGISLNCSSFSDGTYQF 229 (933)
T ss_pred ceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCC-cceee------------eccCCccceeeecCCCCccE
Confidence 222222346799999999988763333445678999988655 22221 112344677777777444 4
Q ss_pred EEEE
Q 021036 313 VAMV 316 (318)
Q Consensus 313 l~~~ 316 (318)
++++
T Consensus 230 Ica~ 233 (933)
T KOG2114|consen 230 ICAG 233 (933)
T ss_pred EEec
Confidence 4443
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.8e-06 Score=70.90 Aligned_cols=189 Identities=7% Similarity=-0.049 Sum_probs=121.8
Q ss_pred ccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEE-eeeecCCCCCCCcEEEEEeC
Q 021036 77 QNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSIS-LAVLSSDSSNPQVLLVTGSS 155 (318)
Q Consensus 77 ~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~-~~p~~~~~~~~~~~l~s~~~ 155 (318)
+-..+.+|+.++- +.-|.|.++|.++......+-+-+..... .......+..-+. | +..+|++++..|.
T Consensus 271 ~R~~nsDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~---k~~k~~~pskyledf------a~~~Gd~ia~VSR 340 (668)
T COG4946 271 PRNANSDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKK---KQPKFVNPSKYLEDF------AVVNGDYIALVSR 340 (668)
T ss_pred ccccCCCCcEEEE-ecCCcEEEeCCCcCcceeeecCCcccccc---ccccccCHHHhhhhh------ccCCCcEEEEEec
Confidence 3345567776554 35688999999875532211110000000 0000011111111 2 2457888888886
Q ss_pred CCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCC-cEEEeeeccCCCeeeE
Q 021036 156 DGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSG-SFDLWKCDISCNKFDK 234 (318)
Q Consensus 156 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg-~i~vw~~~~~~~~~~~ 234 (318)
|...+.+...+-.++. ++...|.-..+. .+++-++.|..|| .+-+| +..+++
T Consensus 341 -GkaFi~~~~~~~~iqv----------------~~~~~VrY~r~~-----~~~e~~vigt~dgD~l~iy--d~~~~e--- 393 (668)
T COG4946 341 -GKAFIMRPWDGYSIQV----------------GKKGGVRYRRIQ-----VDPEGDVIGTNDGDKLGIY--DKDGGE--- 393 (668)
T ss_pred -CcEEEECCCCCeeEEc----------------CCCCceEEEEEc-----cCCcceEEeccCCceEEEE--ecCCce---
Confidence 5667766655433332 123356656665 5677889999999 89999 566664
Q ss_pred eeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEE
Q 021036 235 VGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVA 314 (318)
Q Consensus 235 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~ 314 (318)
+..+...-+.|.++..+|+|++++.+.....+.+.|+.++....+.-... +-|+..+|+|+++++|
T Consensus 394 ~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~--------------~lItdf~~~~nsr~iA 459 (668)
T COG4946 394 VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEY--------------GLITDFDWHPNSRWIA 459 (668)
T ss_pred EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEeccccc--------------ceeEEEEEcCCceeEE
Confidence 44556667889999999999999999999999999999988776543333 3789999999999999
Q ss_pred EE
Q 021036 315 MV 316 (318)
Q Consensus 315 ~~ 316 (318)
-+
T Consensus 460 Ya 461 (668)
T COG4946 460 YA 461 (668)
T ss_pred Ee
Confidence 75
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.5e-06 Score=81.65 Aligned_cols=184 Identities=11% Similarity=-0.043 Sum_probs=105.7
Q ss_pred ccCCCC-CccEEEEecCCCcEEEEEccCCccccccccc--cCCceeEEeeeccccccEEEEEeeeecCCCCCCCc-EEEE
Q 021036 77 QNGSSN-WFSILAVGGRSGKVSLWRICVPKCYSVEDCK--VPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQV-LLVT 152 (318)
Q Consensus 77 ~~~~s~-~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~-~l~s 152 (318)
++++++ ++.++++.+.++.|++|+..++......... ....+.. .....-...+.|++ +++++ ++++
T Consensus 687 gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~--~~~~~~~~P~GIav-------spdG~~LYVA 757 (1057)
T PLN02919 687 DVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSS--GTSTSFAQPSGISL-------SPDLKELYIA 757 (1057)
T ss_pred EEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCc--cccccccCccEEEE-------eCCCCEEEEE
Confidence 344444 3577788888899999999875431100000 0000000 00001123467889 78877 5555
Q ss_pred EeCCCcEEEEECCCcceeeeecccccccccceee-------eeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeee
Q 021036 153 GSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEV-------VTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKC 225 (318)
Q Consensus 153 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~ 225 (318)
-+.++.|++||+.++.......+........... ..........++++ ++|+++++-..++.|++|
T Consensus 758 Ds~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd-----~dG~LYVADs~N~rIrvi-- 830 (1057)
T PLN02919 758 DSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCA-----KDGQIYVADSYNHKIKKL-- 830 (1057)
T ss_pred ECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEe-----CCCcEEEEECCCCEEEEE--
Confidence 5667999999998765321111000000000000 00011123578888 899988888899999999
Q ss_pred ccCCCeeeEeee-----------eecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCce
Q 021036 226 DISCNKFDKVGS-----------YNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSL 276 (318)
Q Consensus 226 ~~~~~~~~~~~~-----------~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 276 (318)
+..++....+.. ..+.-.....++++++|+.+++-+.++.|++||+.++..
T Consensus 831 D~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 831 DPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 454544221111 011123467899999999888889999999999988654
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.6e-06 Score=71.67 Aligned_cols=99 Identities=10% Similarity=0.049 Sum_probs=72.7
Q ss_pred ccceeEEEEeeccCCCCceEEEEE--eCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCC---Cc
Q 021036 191 TVPISVLSLILPVQSPRLMLLAVG--KGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQD---NF 265 (318)
Q Consensus 191 ~~~v~~l~~~~~~~~~~~~~l~~~--~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d---~~ 265 (318)
.++|.++.|+ |++..|+++ -.--++.+| |.+.. ++..+ .+++=.++-|+|.|++|+.++-+ |.
T Consensus 270 ~GPVhdv~W~-----~s~~EF~VvyGfMPAkvtif--nlr~~---~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~ 337 (566)
T KOG2315|consen 270 EGPVHDVTWS-----PSGREFAVVYGFMPAKVTIF--NLRGK---PVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGD 337 (566)
T ss_pred CCCceEEEEC-----CCCCEEEEEEecccceEEEE--cCCCC---EeEeC--CCCCccceEECCCCCEEEEeecCCCCCc
Confidence 4599999999 899776664 466788999 44443 55444 35666789999999998877654 89
Q ss_pred EEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 266 VRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 266 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
|-+||+.+.++.....-. ..+-+.|+|||++++|+-
T Consensus 338 mEvwDv~n~K~i~~~~a~----------------~tt~~eW~PdGe~flTAT 373 (566)
T KOG2315|consen 338 MEVWDVPNRKLIAKFKAA----------------NTTVFEWSPDGEYFLTAT 373 (566)
T ss_pred eEEEeccchhhccccccC----------------CceEEEEcCCCcEEEEEe
Confidence 999999886555322222 336789999999999863
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.5e-08 Score=77.66 Aligned_cols=124 Identities=13% Similarity=0.084 Sum_probs=88.6
Q ss_pred cccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCC-CCcEE
Q 021036 72 KYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSN-PQVLL 150 (318)
Q Consensus 72 ~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~-~~~~l 150 (318)
..+|++..|...+++++.|..+|.|...|++....- .......+ -|...|+++.. -. ++++|
T Consensus 252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG---------~~~~a~rl-yh~Ssvtslq~-------Lq~s~q~L 314 (425)
T KOG2695|consen 252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQG---------NGWCAQRL-YHDSSVTSLQI-------LQFSQQKL 314 (425)
T ss_pred chhHHHHHhcccCCeeEecccCCcEEEEEeeecccC---------CCcceEEE-EcCcchhhhhh-------hccccceE
Confidence 457888888888999999999999999999864210 01122222 47888999887 44 67889
Q ss_pred EEEeCCCcEEEEECCCcce---eeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeecc
Q 021036 151 VTGSSDGSVRIWDGYIQEL---QKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDI 227 (318)
Q Consensus 151 ~s~~~d~~v~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 227 (318)
++.+.+|+|++||++.-++ +....+|... ....-+-+. +....++++++|...++| .+
T Consensus 315 maS~M~gkikLyD~R~~K~~~~V~qYeGHvN~------------~a~l~~~v~-----~eeg~I~s~GdDcytRiW--sl 375 (425)
T KOG2695|consen 315 MASDMTGKIKLYDLRATKCKKSVMQYEGHVNL------------SAYLPAHVK-----EEEGSIFSVGDDCYTRIW--SL 375 (425)
T ss_pred eeccCcCceeEeeehhhhcccceeeeeccccc------------ccccccccc-----cccceEEEccCeeEEEEE--ec
Confidence 9999999999999997666 6666665431 111122233 556677779999999999 44
Q ss_pred CCCe
Q 021036 228 SCNK 231 (318)
Q Consensus 228 ~~~~ 231 (318)
..+.
T Consensus 376 ~~gh 379 (425)
T KOG2695|consen 376 DSGH 379 (425)
T ss_pred ccCc
Confidence 5554
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.2e-07 Score=79.17 Aligned_cols=252 Identities=15% Similarity=0.129 Sum_probs=144.2
Q ss_pred CCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCC
Q 021036 15 SNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSG 94 (318)
Q Consensus 15 ~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg 94 (318)
.+...++.|+.||-+++..+.+..--..... .... -..+-...+.+|...|.-+.++...+.|-+...+|
T Consensus 24 ke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g--laa~--------snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 24 KESGYIACGGADGLLKVLKLGTDTTDLNKSG--LAAA--------SNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred ccCCeEEeccccceeEEEEccccCCcccccc--cccc--------cccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 3455689999999999998876432111110 0000 00111223555666666666666669999999999
Q ss_pred cEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeee-e
Q 021036 95 KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKS-A 173 (318)
Q Consensus 95 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~-~ 173 (318)
.|.+|-+-.+.... . ..-....+-|.+++| ..+|..++..-.||.|.+=.++....... +
T Consensus 94 lIiVWmlykgsW~E-----------E-MiNnRnKSvV~SmsW-------n~dG~kIcIvYeDGavIVGsvdGNRIwgKeL 154 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCE-----------E-MINNRNKSVVVSMSW-------NLDGTKICIVYEDGAVIVGSVDGNRIWGKEL 154 (1189)
T ss_pred eEEEEeeecccHHH-----------H-HhhCcCccEEEEEEE-------cCCCcEEEEEEccCCEEEEeeccceecchhc
Confidence 99999998765421 0 111234567899999 89999998888888887766654321110 0
Q ss_pred cc----cc-----c-------------------cccc----ceeee-----eecccceeEEEEee---ccCCCCceEEEE
Q 021036 174 EA----HC-----V-------------------PFSL----LKEVV-----TVNTVPISVLSLIL---PVQSPRLMLLAV 213 (318)
Q Consensus 174 ~~----~~-----~-------------------~~~~----~~~~~-----~~~~~~v~~l~~~~---~~~~~~~~~l~~ 213 (318)
++ |. . .|.. ...+. ..-...+-.+.|.- ...||+...|++
T Consensus 155 kg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lav 234 (1189)
T KOG2041|consen 155 KGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAV 234 (1189)
T ss_pred chheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEE
Confidence 00 00 0 0000 00000 00111233444431 123467889999
Q ss_pred EeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCC---------cEEEEEecCCceeeeecCCC
Q 021036 214 GKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDN---------FVRSWIFHGNSLSQVSIPTN 284 (318)
Q Consensus 214 ~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~---------~v~iwd~~~~~~~~~~~~~~ 284 (318)
+-.+|.+.+- ...... .++.. .-.-.+..+.|+++|..|+.++.|. .|.+|..-+.-...++...
T Consensus 235 cy~nGr~QiM--R~eND~-~Pvv~--dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg- 308 (1189)
T KOG2041|consen 235 CYANGRMQIM--RSENDP-EPVVV--DTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPG- 308 (1189)
T ss_pred EEcCceehhh--hhcCCC-CCeEE--ecccEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCC-
Confidence 9999998885 322221 13322 2235688899999999999988652 3444443333333333322
Q ss_pred CCCccccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 285 TPGLQSCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 285 ~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
..|++++|-..|..+|.
T Consensus 309 --------------~~It~lsWEg~gLriA~ 325 (1189)
T KOG2041|consen 309 --------------SCITGLSWEGTGLRIAI 325 (1189)
T ss_pred --------------ceeeeeEEcCCceEEEE
Confidence 37888888887766654
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.67 E-value=8.7e-08 Score=84.59 Aligned_cols=200 Identities=19% Similarity=0.251 Sum_probs=124.6
Q ss_pred CCCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEec
Q 021036 12 MKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGG 91 (318)
Q Consensus 12 ~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~ 91 (318)
+.+.+...++++|.|-.+..||+.+-.. +... .+.-+.. ...++|+-.. ++.+| .+
T Consensus 122 ~~~q~pdVlatcsvdt~vh~wd~rSp~~-p~ys--~~~w~s~---asqVkwnyk~-----------------p~vla-ss 177 (1081)
T KOG0309|consen 122 FNPQHPDVLATCSVDTYVHAWDMRSPHR-PFYS--TSSWRSA---ASQVKWNYKD-----------------PNVLA-SS 177 (1081)
T ss_pred cCCCCCcceeeccccccceeeeccCCCc-ceee--eeccccc---CceeeecccC-----------------cchhh-hc
Confidence 4455566689999999999999987432 1111 1112222 3348998877 34554 45
Q ss_pred CCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceee
Q 021036 92 RSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQK 171 (318)
Q Consensus 92 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~ 171 (318)
....|++||...|. .++..+++|...|+.++| ....-..+.+++.|++|++||........
T Consensus 178 hg~~i~vwd~r~gs-------------~pl~s~K~~vs~vn~~~f------nr~~~s~~~s~~~d~tvkfw~y~kSt~e~ 238 (1081)
T KOG0309|consen 178 HGNDIFVWDLRKGS-------------TPLCSLKGHVSSVNSIDF------NRFKYSEIMSSSNDGTVKFWDYSKSTTES 238 (1081)
T ss_pred cCCceEEEeccCCC-------------cceEEecccceeeehHHH------hhhhhhhhcccCCCCceeeeccccccccc
Confidence 66789999998764 567788999999999999 33444578999999999999988654332
Q ss_pred eecccccccccceeeeeecccceeEEEEeeccCCCC--ceEEEEEeCCCcEEEeee-------ccCCCeeeEeeeeeccc
Q 021036 172 SAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPR--LMLLAVGKGSGSFDLWKC-------DISCNKFDKVGSYNAHD 242 (318)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~--~~~l~~~~~dg~i~vw~~-------~~~~~~~~~~~~~~~h~ 242 (318)
...... ..+|.--++. |- |.++.---.+..+.+++. +..+. ..++++|.||.
T Consensus 239 ~~~vtt-------------~~piw~~r~~-----Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~-~~pVh~F~GH~ 299 (1081)
T KOG0309|consen 239 KRTVTT-------------NFPIWRGRYL-----PFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDL-NTPVHTFVGHD 299 (1081)
T ss_pred ceeccc-------------cCcceecccc-----ccCceeEeccccCCeeeeeccccchhhhhccccC-CcceeeecCcc
Confidence 221111 1133333332 22 222221111223333321 22222 24899999999
Q ss_pred CceeEEEEcCCC--------C--EEEEecCCCcEEEEEecC
Q 021036 243 QVVTGLAWAFDG--------C--CLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 243 ~~v~~~~~~~~~--------~--~l~s~~~d~~v~iwd~~~ 273 (318)
..|....|-..+ + .|+|=+.|.++++|-+..
T Consensus 300 D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 300 DVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred hHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 988766664322 2 689999999999998753
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.4e-07 Score=81.07 Aligned_cols=186 Identities=16% Similarity=0.124 Sum_probs=126.3
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCc
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGK 95 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~ 95 (318)
+.+.++-|+-...+...|+.+.+..+...... .+ +..+.. . ++++++|...|+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a---~~----v~imR~--N------------------nr~lf~G~t~G~ 198 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSA---SG----VTIMRY--N------------------NRNLFCGDTRGT 198 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccC---Cc----eEEEEe--c------------------CcEEEeecccce
Confidence 45556666666667777887766544443211 11 111222 2 378999999999
Q ss_pred EEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeC---------CCcEEEEECCC
Q 021036 96 VSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSS---------DGSVRIWDGYI 166 (318)
Q Consensus 96 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~---------d~~v~iwd~~~ 166 (318)
|.+-|.++ .+.+.++..|++.|.++.. .|++|++|+. |..|++||++.
T Consensus 199 V~LrD~~s--------------~~~iht~~aHs~siSDfDv---------~GNlLitCG~S~R~~~l~~D~FvkVYDLRm 255 (1118)
T KOG1275|consen 199 VFLRDPNS--------------FETIHTFDAHSGSISDFDV---------QGNLLITCGYSMRRYNLAMDPFVKVYDLRM 255 (1118)
T ss_pred EEeecCCc--------------Cceeeeeeccccceeeeec---------cCCeEEEeecccccccccccchhhhhhhhh
Confidence 99999988 5678899999999998776 6788999873 55689999998
Q ss_pred cceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeec-cCCCeeeEeeeeecccCce
Q 021036 167 QELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCD-ISCNKFDKVGSYNAHDQVV 245 (318)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~-~~~~~~~~~~~~~~h~~~v 245 (318)
.+.+..+..+.. ..-+.|. |.-...+++++..|...+-|.- ...... .+..+......+
T Consensus 256 mral~PI~~~~~---------------P~flrf~----Psl~t~~~V~S~sGq~q~vd~~~lsNP~~-~~~~v~p~~s~i 315 (1118)
T KOG1275|consen 256 MRALSPIQFPYG---------------PQFLRFH----PSLTTRLAVTSQSGQFQFVDTATLSNPPA-GVKMVNPNGSGI 315 (1118)
T ss_pred hhccCCcccccC---------------chhhhhc----ccccceEEEEecccceeeccccccCCCcc-ceeEEccCCCcc
Confidence 776655443332 1345565 2335678888999999887410 111110 111222234558
Q ss_pred eEEEEcCCCCEEEEecCCCcEEEEEe
Q 021036 246 TGLAWAFDGCCLYSCSQDNFVRSWIF 271 (318)
Q Consensus 246 ~~~~~~~~~~~l~s~~~d~~v~iwd~ 271 (318)
.++++++.|..|+.|..+|.|.+|.-
T Consensus 316 ~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 316 SAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred eeEEecCCCceEEEecccCcEeeecC
Confidence 99999999999999999999999973
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.67 E-value=0.00012 Score=59.57 Aligned_cols=171 Identities=16% Similarity=0.106 Sum_probs=104.5
Q ss_pred EEEEecCCCcEEEEEccCCccccccccccCCceeEEeeec--c-ccccEEEEEeeeecCCCCCCCcEEEEEeCC------
Q 021036 86 ILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQ--A-HNSWITSISLAVLSSDSSNPQVLLVTGSSD------ 156 (318)
Q Consensus 86 ~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~--~-h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d------ 156 (318)
.|+.+...+ +.++|..+++. +.+.... . .....+.+++ .++|++.++....
T Consensus 53 ~l~v~~~~~-~~~~d~~~g~~------------~~~~~~~~~~~~~~~~ND~~v-------d~~G~ly~t~~~~~~~~~~ 112 (246)
T PF08450_consen 53 RLYVADSGG-IAVVDPDTGKV------------TVLADLPDGGVPFNRPNDVAV-------DPDGNLYVTDSGGGGASGI 112 (246)
T ss_dssp EEEEEETTC-EEEEETTTTEE------------EEEEEEETTCSCTEEEEEEEE--------TTS-EEEEEECCBCTTCG
T ss_pred EEEEEEcCc-eEEEecCCCcE------------EEEeeccCCCcccCCCceEEE-------cCCCCEEEEecCCCccccc
Confidence 444444444 55568887652 2333332 1 3456889999 8999988876644
Q ss_pred --CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEE-EEeCCCcEEEeeeccCCCeee
Q 021036 157 --GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLA-VGKGSGSFDLWKCDISCNKFD 233 (318)
Q Consensus 157 --~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~-~~~~dg~i~vw~~~~~~~~~~ 233 (318)
|.|..++.. ++....... -...+.|+|+ |+++.|+ +-+..+.|..|+++.......
T Consensus 113 ~~g~v~~~~~~-~~~~~~~~~---------------~~~pNGi~~s-----~dg~~lyv~ds~~~~i~~~~~~~~~~~~~ 171 (246)
T PF08450_consen 113 DPGSVYRIDPD-GKVTVVADG---------------LGFPNGIAFS-----PDGKTLYVADSFNGRIWRFDLDADGGELS 171 (246)
T ss_dssp GSEEEEEEETT-SEEEEEEEE---------------ESSEEEEEEE-----TTSSEEEEEETTTTEEEEEEEETTTCCEE
T ss_pred cccceEEECCC-CeEEEEecC---------------cccccceEEC-----CcchheeecccccceeEEEecccccccee
Confidence 456666666 443222211 1246799999 9998665 556788888887765555332
Q ss_pred Eeeee---ecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEc-CC
Q 021036 234 KVGSY---NAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVS-PG 309 (318)
Q Consensus 234 ~~~~~---~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-p~ 309 (318)
....+ ....+..-.++++.+|++.++.-..+.|.+++.....+..+..... .+++++|. ++
T Consensus 172 ~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~~p~~---------------~~t~~~fgg~~ 236 (246)
T PF08450_consen 172 NRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLREIELPVP---------------RPTNCAFGGPD 236 (246)
T ss_dssp EEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCEEEEEE-SSS---------------SEEEEEEESTT
T ss_pred eeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCccEEEEEcCCCC---------------CEEEEEEECCC
Confidence 22222 2222346789999999988887788999999988444444443322 67899994 55
Q ss_pred CcE
Q 021036 310 NLV 312 (318)
Q Consensus 310 ~~~ 312 (318)
...
T Consensus 237 ~~~ 239 (246)
T PF08450_consen 237 GKT 239 (246)
T ss_dssp SSE
T ss_pred CCE
Confidence 443
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.3e-07 Score=82.01 Aligned_cols=150 Identities=18% Similarity=0.209 Sum_probs=106.5
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEEC
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDG 164 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~ 164 (318)
.+-++......-.+|++..... ....-.+.+|...|+.+.|+| .....+++++.|-.+..||+
T Consensus 82 ~~wiVsts~qkaiiwnlA~ss~-----------~aIef~lhghsraitd~n~~~------q~pdVlatcsvdt~vh~wd~ 144 (1081)
T KOG0309|consen 82 PYWIVSTSNQKAIIWNLAKSSS-----------NAIEFVLHGHSRAITDINFNP------QHPDVLATCSVDTYVHAWDM 144 (1081)
T ss_pred ceeEEecCcchhhhhhhhcCCc-----------cceEEEEecCccceeccccCC------CCCcceeeccccccceeeec
Confidence 4556666667778899975431 122234578999999999943 34467999999999999999
Q ss_pred CCcce-eeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccC
Q 021036 165 YIQEL-QKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQ 243 (318)
Q Consensus 165 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~ 243 (318)
++... +...... ......+.|++ .++..+|+ +....|.+|| .+.+.- ++..+++|..
T Consensus 145 rSp~~p~ys~~~w--------------~s~asqVkwny----k~p~vlas-shg~~i~vwd--~r~gs~-pl~s~K~~vs 202 (1081)
T KOG0309|consen 145 RSPHRPFYSTSSW--------------RSAASQVKWNY----KDPNVLAS-SHGNDIFVWD--LRKGST-PLCSLKGHVS 202 (1081)
T ss_pred cCCCcceeeeecc--------------cccCceeeecc----cCcchhhh-ccCCceEEEe--ccCCCc-ceEEecccce
Confidence 97542 2222211 12456778884 56666655 4577799995 444432 7788999999
Q ss_pred ceeEEEEcCC-CCEEEEecCCCcEEEEEecC
Q 021036 244 VVTGLAWAFD-GCCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 244 ~v~~~~~~~~-~~~l~s~~~d~~v~iwd~~~ 273 (318)
.|..++|... ...+.+++.|++|+.||...
T Consensus 203 ~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 203 SVNSIDFNRFKYSEIMSSSNDGTVKFWDYSK 233 (1081)
T ss_pred eeehHHHhhhhhhhhcccCCCCceeeecccc
Confidence 9999999874 44788999999999999865
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.1e-07 Score=73.31 Aligned_cols=231 Identities=13% Similarity=0.110 Sum_probs=136.5
Q ss_pred CCCCCccceEEeeCCCceeEeecCCCCCCCc--eecc---hhccccccccc------------eeeeecccccC-CCCcc
Q 021036 12 MKDSNTHPTVAASKSKGNSITKIPSNCCLPL--ITAD---QYASRSAMLHS------------LAVAWSPVLRL-SSKKY 73 (318)
Q Consensus 12 ~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~--~~~~---~~~~~~~~~~~------------~~~~w~p~~~~-~~~~~ 73 (318)
+++.+....+....|+++++|.+........ -... ..+..+.+... .-++--|.... ..|.+
T Consensus 94 ~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~y 173 (460)
T COG5170 94 FDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPY 173 (460)
T ss_pred ecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceecccccee
Confidence 5666777889999999999998765321100 0000 00011111000 01233333222 36888
Q ss_pred cccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccc-----cccEEEEEeeeecCCCCCCCc
Q 021036 74 PVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAH-----NSWITSISLAVLSSDSSNPQV 148 (318)
Q Consensus 74 ~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~p~~~~~~~~~~ 148 (318)
.+.++.+..+...++++ .|-.|.+|+++-... .-.+..++.| ..-|++..|+| ....
T Consensus 174 hiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~-----------sFnIVDiKP~nmeeLteVItSaeFhp------~~cn 235 (460)
T COG5170 174 HINSISFNSDKETLLSA-DDLRINLWNLEIIDG-----------SFNIVDIKPHNMEELTEVITSAEFHP------EMCN 235 (460)
T ss_pred EeeeeeecCchheeeec-cceeeeeccccccCC-----------ceEEEeccCccHHHHHHHHhhcccCH------hHcc
Confidence 99999999999888876 578899999874321 0112233333 34578888832 2335
Q ss_pred EEEEEeCCCcEEEEECCCcceee----eecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEee
Q 021036 149 LLVTGSSDGSVRIWDGYIQELQK----SAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWK 224 (318)
Q Consensus 149 ~l~s~~~d~~v~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~ 224 (318)
.+.-++..|.|++-|+++..... .+.....+.. ..........|+.+.|+ ++|+++++-+ -.+|++||
T Consensus 236 ~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~--~~ff~eivsSISD~kFs-----~ngryIlsRd-yltvkiwD 307 (460)
T COG5170 236 VFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVD--VDFFEEIVSSISDFKFS-----DNGRYILSRD-YLTVKIWD 307 (460)
T ss_pred eEEEecCCCcEEehhhhhhhhccCchhhhhhccCccc--chhHHHHhhhhcceEEc-----CCCcEEEEec-cceEEEEe
Confidence 67777888999999998543211 1111100000 01112233478899999 9999998876 56899997
Q ss_pred eccCCCeeeEeeeeecc------------cCce---eEEEEcCCCCEEEEecCCCcEEEEEe
Q 021036 225 CDISCNKFDKVGSYNAH------------DQVV---TGLAWAFDGCCLYSCSQDNFVRSWIF 271 (318)
Q Consensus 225 ~~~~~~~~~~~~~~~~h------------~~~v---~~~~~~~~~~~l~s~~~d~~v~iwd~ 271 (318)
.++... ++.+..-| ...| ..+.|+-|.+.+++|+......+|-+
T Consensus 308 vnm~k~---pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 308 VNMAKN---PIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred cccccC---CceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence 665443 44444322 1223 24678888888888888877777764
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.5e-05 Score=62.28 Aligned_cols=206 Identities=15% Similarity=0.074 Sum_probs=124.2
Q ss_pred ccceEEeeCCCce-eEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEe-----
Q 021036 17 THPTVAASKSKGN-SITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVG----- 90 (318)
Q Consensus 17 ~~~~~t~s~d~~i-~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g----- 90 (318)
...++.+..-|+. .+||..+++..+.+.... .+..+-. -.|+|++ ++|++.
T Consensus 17 ~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~--gRHFyGH---g~fs~dG------------------~~LytTEnd~~ 73 (305)
T PF07433_consen 17 PEAVAFARRPGTFALVFDCRTGQLLQRLWAPP--GRHFYGH---GVFSPDG------------------RLLYTTENDYE 73 (305)
T ss_pred CeEEEEEeCCCcEEEEEEcCCCceeeEEcCCC--CCEEecC---EEEcCCC------------------CEEEEeccccC
Confidence 3445666666654 667998888766655422 1222222 3455554 888885
Q ss_pred cCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEe----------------
Q 021036 91 GRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS---------------- 154 (318)
Q Consensus 91 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~---------------- 154 (318)
...|.|-|||...+ .+.+.++..|.-.-..+.+ .++|+.|+.+-
T Consensus 74 ~g~G~IgVyd~~~~-------------~~ri~E~~s~GIGPHel~l-------~pDG~tLvVANGGI~Thpd~GR~kLNl 133 (305)
T PF07433_consen 74 TGRGVIGVYDAARG-------------YRRIGEFPSHGIGPHELLL-------MPDGETLVVANGGIETHPDSGRAKLNL 133 (305)
T ss_pred CCcEEEEEEECcCC-------------cEEEeEecCCCcChhhEEE-------cCCCCEEEEEcCCCccCcccCceecCh
Confidence 45788999999832 5677788777666678888 78887777652
Q ss_pred --CCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCc-------EEEeee
Q 021036 155 --SDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGS-------FDLWKC 225 (318)
Q Consensus 155 --~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~-------i~vw~~ 225 (318)
.+.++...|..+|+.+....... ..|...+..|++. ++|..++..-..|. +.++
T Consensus 134 ~tM~psL~~ld~~sG~ll~q~~Lp~----------~~~~lSiRHLa~~-----~~G~V~~a~Q~qg~~~~~~PLva~~-- 196 (305)
T PF07433_consen 134 DTMQPSLVYLDARSGALLEQVELPP----------DLHQLSIRHLAVD-----GDGTVAFAMQYQGDPGDAPPLVALH-- 196 (305)
T ss_pred hhcCCceEEEecCCCceeeeeecCc----------cccccceeeEEec-----CCCcEEEEEecCCCCCccCCeEEEE--
Confidence 22234444555555444322111 2345578899998 77766655543332 3333
Q ss_pred ccCCCeeeEee----eeecccCceeEEEEcCCCCEEE-EecCCCcEEEEEecCCceeeeecCC
Q 021036 226 DISCNKFDKVG----SYNAHDQVVTGLAWAFDGCCLY-SCSQDNFVRSWIFHGNSLSQVSIPT 283 (318)
Q Consensus 226 ~~~~~~~~~~~----~~~~h~~~v~~~~~~~~~~~l~-s~~~d~~v~iwd~~~~~~~~~~~~~ 283 (318)
+. ...++.+. ....-.+.+-+|++++++.+++ |+-..+.+.+||..++.+......+
T Consensus 197 ~~-g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~ 258 (305)
T PF07433_consen 197 RR-GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP 258 (305)
T ss_pred cC-CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC
Confidence 11 11111111 0123346788999999998764 5556678999999998877654443
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.5e-07 Score=70.06 Aligned_cols=73 Identities=26% Similarity=0.349 Sum_probs=58.7
Q ss_pred ccccCCCCC-ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEE
Q 021036 75 VPQNGSSNW-FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTG 153 (318)
Q Consensus 75 v~~~~~s~~-~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~ 153 (318)
|++++..|. .+++++|+.||.+-+||.+... .+...++.|..+|+.+-| ++.+++.|+++
T Consensus 182 v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~-------------~p~S~l~ahk~~i~eV~F------Hpk~p~~Lft~ 242 (319)
T KOG4714|consen 182 VTALCSHPAQQHLVCCGTDDGIVGLWDARNVA-------------MPVSLLKAHKAEIWEVHF------HPKNPEHLFTC 242 (319)
T ss_pred chhhhCCcccccEEEEecCCCeEEEEEccccc-------------chHHHHHHhhhhhhheec------cCCCchheeEe
Confidence 555555553 5788999999999999998753 245567899999999999 45566779999
Q ss_pred eCCCcEEEEECCC
Q 021036 154 SSDGSVRIWDGYI 166 (318)
Q Consensus 154 ~~d~~v~iwd~~~ 166 (318)
++||.+..||..+
T Consensus 243 sedGslw~wdas~ 255 (319)
T KOG4714|consen 243 SEDGSLWHWDAST 255 (319)
T ss_pred cCCCcEEEEcCCC
Confidence 9999999999764
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.6e-05 Score=64.31 Aligned_cols=231 Identities=9% Similarity=-0.054 Sum_probs=124.6
Q ss_pred CCCCCccceEEee---------CCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCC
Q 021036 12 MKDSNTHPTVAAS---------KSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSN 82 (318)
Q Consensus 12 ~~~~~~~~~~t~s---------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~ 82 (318)
+.+.+....++.+ .+..|.+||..+.+.+..+....-++-........++.+|++
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dg---------------- 116 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDN---------------- 116 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCC----------------
Confidence 3344444556666 789999999999988777765321110000111125566665
Q ss_pred CccEEEEec-C-CCcEEEEEccCCcccccccccc---------------CCceeEEeeeccccc--cEEEEE-eee----
Q 021036 83 WFSILAVGG-R-SGKVSLWRICVPKCYSVEDCKV---------------PTTAVLIGLFQAHNS--WITSIS-LAV---- 138 (318)
Q Consensus 83 ~~~~l~~g~-~-dg~i~iw~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~h~~--~v~~~~-~~p---- 138 (318)
++|++.. . +..|.+.|+.+++.+.....+. -.++.....-..-.+ .+.... |.+
T Consensus 117 --k~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~ 194 (352)
T TIGR02658 117 --KTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEY 194 (352)
T ss_pred --CEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccc
Confidence 7777655 3 6888899998876543211000 001111110000000 011100 101
Q ss_pred --ecC-CCCCCCcEEEEEeCCCcEEEEECCCccee-----eeecccccccccceeeeeecccceeEEEEeeccCCCCceE
Q 021036 139 --LSS-DSSNPQVLLVTGSSDGSVRIWDGYIQELQ-----KSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLML 210 (318)
Q Consensus 139 --~~~-~~~~~~~~l~s~~~d~~v~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~ 210 (318)
.++ -...+|.++..... |+|.+.|+...... ..+..... ...-....+.-++++ ++++.
T Consensus 195 v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~-------~~~wrP~g~q~ia~~-----~dg~~ 261 (352)
T TIGR02658 195 LINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEK-------ADGWRPGGWQQVAYH-----RARDR 261 (352)
T ss_pred cccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeecccccc-------ccccCCCcceeEEEc-----CCCCE
Confidence 000 01236777776666 99999997543322 11111000 000112244458898 88888
Q ss_pred EEEEeC--------C--CcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCC-EEEEec-CCCcEEEEEecCCceee
Q 021036 211 LAVGKG--------S--GSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGC-CLYSCS-QDNFVRSWIFHGNSLSQ 278 (318)
Q Consensus 211 l~~~~~--------d--g~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~-~d~~v~iwd~~~~~~~~ 278 (318)
+++... + +.|.++ |..+.+ .+..+.. ...+..++++||++ +|++.. .++.|.++|..+++...
T Consensus 262 lyV~~~~~~~~thk~~~~~V~Vi--D~~t~k--vi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~ 336 (352)
T TIGR02658 262 IYLLADQRAKWTHKTASRFLFVV--DAKTGK--RLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELS 336 (352)
T ss_pred EEEEecCCccccccCCCCEEEEE--ECCCCe--EEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEe
Confidence 877431 1 345555 777776 5555543 45788999999999 777665 67889999998876554
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.5e-07 Score=77.21 Aligned_cols=210 Identities=14% Similarity=0.132 Sum_probs=139.2
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeC-CCcEEEEE
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSS-DGSVRIWD 163 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~-d~~v~iwd 163 (318)
+++.+++.||.++.|.-..-.- .+.+..+..|...|.+++. +-++.++.|.+. |..++++|
T Consensus 21 ~fiiqASlDGh~KFWkKs~isG-----------vEfVKhFraHL~~I~sl~~-------S~dg~L~~Sv~d~Dhs~KvfD 82 (558)
T KOG0882|consen 21 KFIIQASLDGHKKFWKKSRISG-----------VEFVKHFRAHLGVILSLAV-------SYDGWLFRSVEDPDHSVKVFD 82 (558)
T ss_pred heEEeeecchhhhhcCCCCccc-----------eeehhhhHHHHHHHHhhhc-------cccceeEeeccCcccceeEEE
Confidence 7999999999999997654121 3466778889999999998 889989999777 99999999
Q ss_pred CCCcceeeeecc------------cccc----------------------cccceeeeeecccceeEEEEeeccCCCCce
Q 021036 164 GYIQELQKSAEA------------HCVP----------------------FSLLKEVVTVNTVPISVLSLILPVQSPRLM 209 (318)
Q Consensus 164 ~~~~~~~~~~~~------------~~~~----------------------~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~ 209 (318)
+.+-..+.-++. ...+ ..........|..+|..+.+. +.++
T Consensus 83 vEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~-----qa~D 157 (558)
T KOG0882|consen 83 VENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYN-----QAGD 157 (558)
T ss_pred eeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEee-----cccc
Confidence 875433211110 0000 011113445688899999999 8999
Q ss_pred EEEEEeCCCcEEEeeeccCCCeee-----------EeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceee
Q 021036 210 LLAVGKGSGSFDLWKCDISCNKFD-----------KVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQ 278 (318)
Q Consensus 210 ~l~~~~~dg~i~vw~~~~~~~~~~-----------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~ 278 (318)
.+.+....|.|.-|..+..-+.++ .+..+........++.|+|+|..+.+-+.|..|++++.+++.+.+
T Consensus 158 s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvq 237 (558)
T KOG0882|consen 158 SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQ 237 (558)
T ss_pred ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhh
Confidence 999999999999995431000000 011122234566899999999999999999999999999877643
Q ss_pred eecC--------CCCCC-c---------cccccCCCcc-eeeeEEEEcCCCcEEEEEe
Q 021036 279 VSIP--------TNTPG-L---------QSCTDLPDAF-VSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 279 ~~~~--------~~~~~-~---------~~~~~~~~h~-~~v~~v~~sp~~~~l~~~~ 317 (318)
..-. +..++ + +...++.-|. ..-..+.|...|.+|+-|.
T Consensus 238 eiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t 295 (558)
T KOG0882|consen 238 EIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGT 295 (558)
T ss_pred hhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeec
Confidence 2211 11110 1 1112222332 3345778888888887664
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.58 E-value=8.8e-06 Score=77.62 Aligned_cols=199 Identities=13% Similarity=0.050 Sum_probs=123.6
Q ss_pred ccccccCCCCCccEEEEecCCCcEEEE----EccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCc
Q 021036 73 YPVPQNGSSNWFSILAVGGRSGKVSLW----RICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQV 148 (318)
Q Consensus 73 ~~v~~~~~s~~~~~l~~g~~dg~i~iw----~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~ 148 (318)
..|.++.+-++...++.+..+|.|.+. +..+.. +.....-...|.+++| +|+++
T Consensus 76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~---------------~E~VG~vd~GI~a~~W-------SPD~E 133 (928)
T PF04762_consen 76 DKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE---------------IEIVGSVDSGILAASW-------SPDEE 133 (928)
T ss_pred CcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce---------------eEEEEEEcCcEEEEEE-------CCCcC
Confidence 456667777777888889999999999 444322 2223334678999999 99999
Q ss_pred EEEEEeCCCcEEEEECCCcceeeeeccccccc------cc-----------------------------ceeeeeecccc
Q 021036 149 LLVTGSSDGSVRIWDGYIQELQKSAEAHCVPF------SL-----------------------------LKEVVTVNTVP 193 (318)
Q Consensus 149 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~------~~-----------------------------~~~~~~~~~~~ 193 (318)
+|+..+.++++.+.+- +...+.....+...+ ++ ...... ....
T Consensus 134 lla~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~ 211 (928)
T PF04762_consen 134 LLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDG 211 (928)
T ss_pred EEEEEeCCCEEEEEec-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCC
Confidence 9999999999988753 222222211111100 00 000111 2334
Q ss_pred eeEEEEeeccCCCCceEEEEEeC---C---CcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecC---CC
Q 021036 194 ISVLSLILPVQSPRLMLLAVGKG---S---GSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQ---DN 264 (318)
Q Consensus 194 v~~l~~~~~~~~~~~~~l~~~~~---d---g~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~---d~ 264 (318)
-..|+|. .||.+||+.+- . ..++||+ . .+.. ..+-+.-.+--.+++|.|.|.+||+... ..
T Consensus 212 ~~~ISWR-----GDG~yFAVss~~~~~~~~R~iRVy~--R-eG~L--~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~ 281 (928)
T PF04762_consen 212 RVRISWR-----GDGEYFAVSSVEPETGSRRVIRVYS--R-EGEL--QSTSEPVDGLEGALSWRPSGNLIASSQRLPDRH 281 (928)
T ss_pred ceEEEEC-----CCCcEEEEEEEEcCCCceeEEEEEC--C-CceE--EeccccCCCccCCccCCCCCCEEEEEEEcCCCc
Confidence 4577787 99999999874 3 4689993 2 3432 1121222222346899999999998754 45
Q ss_pred cEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 265 FVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 265 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
.|.+|..++-....+..... .....|..++|++|+..||..
T Consensus 282 ~VvFfErNGLrhgeF~l~~~-----------~~~~~v~~l~Wn~ds~iLAv~ 322 (928)
T PF04762_consen 282 DVVFFERNGLRHGEFTLRFD-----------PEEEKVIELAWNSDSEILAVW 322 (928)
T ss_pred EEEEEecCCcEeeeEecCCC-----------CCCceeeEEEECCCCCEEEEE
Confidence 67788766533333332210 122488999999999999873
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.4e-06 Score=71.74 Aligned_cols=100 Identities=20% Similarity=0.239 Sum_probs=73.7
Q ss_pred EecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcc
Q 021036 89 VGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQE 168 (318)
Q Consensus 89 ~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 168 (318)
..++...+.+|....+. ...+-+|-..+..++| ++++++++++..|..|++-....--
T Consensus 127 kagD~~~~di~s~~~~~---------------~~~~lGhvSml~dVav-------S~D~~~IitaDRDEkIRvs~ypa~f 184 (390)
T KOG3914|consen 127 KAGDVYSFDILSADSGR---------------CEPILGHVSMLLDVAV-------SPDDQFIITADRDEKIRVSRYPATF 184 (390)
T ss_pred ecCCceeeeeecccccC---------------cchhhhhhhhhheeee-------cCCCCEEEEecCCceEEEEecCccc
Confidence 34455556666655432 2346799999999999 9999999999999999998776543
Q ss_pred eeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCe
Q 021036 169 LQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNK 231 (318)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~ 231 (318)
.+..+. -+|..-|..+++- ++..|++|+.|+++++| |.++++
T Consensus 185 ~Iesfc-------------lGH~eFVS~isl~------~~~~LlS~sGD~tlr~W--d~~sgk 226 (390)
T KOG3914|consen 185 VIESFC-------------LGHKEFVSTISLT------DNYLLLSGSGDKTLRLW--DITSGK 226 (390)
T ss_pred chhhhc-------------cccHhheeeeeec------cCceeeecCCCCcEEEE--ecccCC
Confidence 333332 3456688888885 56779999999999999 455554
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.55 E-value=6.1e-05 Score=65.73 Aligned_cols=75 Identities=16% Similarity=0.154 Sum_probs=60.2
Q ss_pred cccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEE
Q 021036 190 NTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSW 269 (318)
Q Consensus 190 ~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iw 269 (318)
....+.+++++ |+.+.|+.|+.||.|.+||. ..+. ..+....-.++.++|+|+|.++++|+..|.+.+|
T Consensus 258 L~s~v~~ca~s-----p~E~kLvlGC~DgSiiLyD~--~~~~----t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~F 326 (545)
T PF11768_consen 258 LPSQVICCARS-----PSEDKLVLGCEDGSIILYDT--TRGV----TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCF 326 (545)
T ss_pred cCCcceEEecC-----cccceEEEEecCCeEEEEEc--CCCe----eeeeeecccceEEEEcCCCcEEEEEcCCceEEEE
Confidence 45578899999 99999999999999999953 3332 2233344567889999999999999999999999
Q ss_pred EecCCc
Q 021036 270 IFHGNS 275 (318)
Q Consensus 270 d~~~~~ 275 (318)
|+.-..
T Consensus 327 D~ALsp 332 (545)
T PF11768_consen 327 DMALSP 332 (545)
T ss_pred EeecCc
Confidence 997543
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=8e-06 Score=69.50 Aligned_cols=181 Identities=17% Similarity=0.192 Sum_probs=116.1
Q ss_pred eeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEe-----------c
Q 021036 23 ASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVG-----------G 91 (318)
Q Consensus 23 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g-----------~ 91 (318)
...+..+++|.++.++.+....... .....+.|++.+ ++|+.- -
T Consensus 198 ~~kpa~~~i~sIp~~s~l~tk~lfk-------~~~~qLkW~~~g------------------~~ll~l~~t~~ksnKsyf 252 (561)
T COG5354 198 LNKPAMVRILSIPKNSVLVTKNLFK-------VSGVQLKWQVLG------------------KYLLVLVMTHTKSNKSYF 252 (561)
T ss_pred CCCCcEEEEEEccCCCeeeeeeeEe-------ecccEEEEecCC------------------ceEEEEEEEeeeccccee
Confidence 4567788888888665544433321 113348899887 444331 1
Q ss_pred CCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEe--CCCcEEEEECCCcce
Q 021036 92 RSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS--SDGSVRIWDGYIQEL 169 (318)
Q Consensus 92 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~--~d~~v~iwd~~~~~~ 169 (318)
....+.|+++.... +.....-.++|...+| .|.++.|++.+ .+..+.++|++.. .
T Consensus 253 gesnLyl~~~~e~~---------------i~V~~~~~~pVhdf~W-------~p~S~~F~vi~g~~pa~~s~~~lr~N-l 309 (561)
T COG5354 253 GESNLYLLRITERS---------------IPVEKDLKDPVHDFTW-------EPLSSRFAVISGYMPASVSVFDLRGN-L 309 (561)
T ss_pred ccceEEEEeecccc---------------cceeccccccceeeee-------cccCCceeEEecccccceeecccccc-e
Confidence 12457777776422 1222245789999999 77777776655 6789999999865 3
Q ss_pred eeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeC---CCcEEEeeeccCCCeeeEeeeeecccCcee
Q 021036 170 QKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKG---SGSFDLWKCDISCNKFDKVGSYNAHDQVVT 246 (318)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~---dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~ 246 (318)
...+.. .+-+.+.|+ |.+++++.++. .|.|.+| +... ++..+..+.+-.. +
T Consensus 310 ~~~~Pe----------------~~rNT~~fs-----p~~r~il~agF~nl~gni~i~--~~~~-rf~~~~~~~~~n~--s 363 (561)
T COG5354 310 RFYFPE----------------QKRNTIFFS-----PHERYILFAGFDNLQGNIEIF--DPAG-RFKVAGAFNGLNT--S 363 (561)
T ss_pred EEecCC----------------ccccccccc-----CcccEEEEecCCccccceEEe--ccCC-ceEEEEEeecCCc--e
Confidence 332221 134567788 89999998775 4668999 4444 3335546655433 4
Q ss_pred EEEEcCCCCEEEEec------CCCcEEEEEecCCcee
Q 021036 247 GLAWAFDGCCLYSCS------QDNFVRSWIFHGNSLS 277 (318)
Q Consensus 247 ~~~~~~~~~~l~s~~------~d~~v~iwd~~~~~~~ 277 (318)
-..|+|++.++.+.. .|..+.|||+.+....
T Consensus 364 ~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f 400 (561)
T COG5354 364 YCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF 400 (561)
T ss_pred EeeccCCceEEEecCCCcccccCcceEEEEecCchhh
Confidence 468999999887653 5789999999875443
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.2e-05 Score=66.93 Aligned_cols=141 Identities=12% Similarity=0.010 Sum_probs=86.3
Q ss_pred cEEEEEeeeecCCCCCCCcE-EEEEeC---CCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCC
Q 021036 130 WITSISLAVLSSDSSNPQVL-LVTGSS---DGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQS 205 (318)
Q Consensus 130 ~v~~~~~~p~~~~~~~~~~~-l~s~~~---d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 205 (318)
.+....| +|+|+. ++..+. +..|.++|+.+++....... ........|+
T Consensus 189 ~~~~p~w-------SpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~---------------~g~~~~~~~S----- 241 (419)
T PRK04043 189 LNIFPKW-------ANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASS---------------QGMLVVSDVS----- 241 (419)
T ss_pred CeEeEEE-------CCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecC---------------CCcEEeeEEC-----
Confidence 6778999 899974 554443 35688889988765443321 1133456688
Q ss_pred CCceEEE-EEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecC-CC--cEEEEEecCCceeeeec
Q 021036 206 PRLMLLA-VGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQ-DN--FVRSWIFHGNSLSQVSI 281 (318)
Q Consensus 206 ~~~~~l~-~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d~--~v~iwd~~~~~~~~~~~ 281 (318)
|||+.++ +.+.++.-.+|-++..++..+++. .+........|+|||+.|+-.+. .+ .|.+.|+.++...++..
T Consensus 242 PDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT---~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~ 318 (419)
T PRK04043 242 KDGSKLLLTMAPKGQPDIYLYDTNTKTLTQIT---NYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF 318 (419)
T ss_pred CCCCEEEEEEccCCCcEEEEEECCCCcEEEcc---cCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc
Confidence 8997555 444455545554466666544433 23322345679999987665543 33 57777887777655443
Q ss_pred CCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 282 PTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 282 ~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
... ....|+|||++|+...
T Consensus 319 ~g~-----------------~~~~~SPDG~~Ia~~~ 337 (419)
T PRK04043 319 HGK-----------------NNSSVSTYKNYIVYSS 337 (419)
T ss_pred CCC-----------------cCceECCCCCEEEEEE
Confidence 211 1248999999887653
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.2e-06 Score=76.68 Aligned_cols=173 Identities=16% Similarity=0.057 Sum_probs=119.2
Q ss_pred CccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEE
Q 021036 83 WFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIW 162 (318)
Q Consensus 83 ~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iw 162 (318)
++..++.|+....+..+|+++.+ ..+...-....|.-++. +++++.+|...|+|.+-
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~--------------e~r~~~v~a~~v~imR~---------Nnr~lf~G~t~G~V~Lr 202 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEK--------------ETRTTNVSASGVTIMRY---------NNRNLFCGDTRGTVFLR 202 (1118)
T ss_pred CCcceeecchhhheeeeecccce--------------eeeeeeccCCceEEEEe---------cCcEEEeecccceEEee
Confidence 34566667777777778887633 33443333445888877 67889999999999999
Q ss_pred ECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeC---------CCcEEEeeeccCCCeee
Q 021036 163 DGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKG---------SGSFDLWKCDISCNKFD 233 (318)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~---------dg~i~vw~~~~~~~~~~ 233 (318)
|.++.+.++++..|.. .|.++.. .|++|++++. |..|+|| |++.-+
T Consensus 203 D~~s~~~iht~~aHs~--------------siSDfDv-------~GNlLitCG~S~R~~~l~~D~FvkVY--DLRmmr-- 257 (1118)
T KOG1275|consen 203 DPNSFETIHTFDAHSG--------------SISDFDV-------QGNLLITCGYSMRRYNLAMDPFVKVY--DLRMMR-- 257 (1118)
T ss_pred cCCcCceeeeeecccc--------------ceeeeec-------cCCeEEEeecccccccccccchhhhh--hhhhhh--
Confidence 9999999998877664 6665555 4788888873 5668899 454433
Q ss_pred EeeeeecccCceeEEEEcCC-CCEEEEecCCCcEEEEEe---cCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCC
Q 021036 234 KVGSYNAHDQVVTGLAWAFD-GCCLYSCSQDNFVRSWIF---HGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPG 309 (318)
Q Consensus 234 ~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~v~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 309 (318)
.+.-+.-+-++ .-+.|.|. ...++.++.-|...+-|. .+........++.+. .+.++.++++
T Consensus 258 al~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s-------------~i~~fDiSsn 323 (1118)
T KOG1275|consen 258 ALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGS-------------GISAFDISSN 323 (1118)
T ss_pred ccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCC-------------cceeEEecCC
Confidence 22222222222 45778886 457888899999999994 333334444555543 5789999999
Q ss_pred CcEEEEEe
Q 021036 310 NLVVAMVQ 317 (318)
Q Consensus 310 ~~~l~~~~ 317 (318)
|..||.|.
T Consensus 324 ~~alafgd 331 (1118)
T KOG1275|consen 324 GDALAFGD 331 (1118)
T ss_pred CceEEEec
Confidence 99998774
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=6e-06 Score=73.79 Aligned_cols=152 Identities=20% Similarity=0.199 Sum_probs=108.0
Q ss_pred EEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCC---C-C-CCcEEEEEeCCCcEE
Q 021036 86 ILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDS---S-N-PQVLLVTGSSDGSVR 160 (318)
Q Consensus 86 ~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~---~-~-~~~~l~s~~~d~~v~ 160 (318)
+||-|+.. .|.+-|..+ .+.++.+.-|...|+.++|.|..... + + ..-+|+++...|.|.
T Consensus 28 LiAygshs-lV~VVDs~s--------------~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi 92 (1062)
T KOG1912|consen 28 LIAYGSHS-LVSVVDSRS--------------LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII 92 (1062)
T ss_pred eEEEecCc-eEEEEehhh--------------hhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence 77877654 577888876 56778888999999999998875321 1 1 234677777889999
Q ss_pred EEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCc-eEEEEEeCCCcEEEeeeccCCCeeeEeeeee
Q 021036 161 IWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRL-MLLAVGKGSGSFDLWKCDISCNKFDKVGSYN 239 (318)
Q Consensus 161 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 239 (318)
+||...+..+..+..+.. ++..++|-+.. ++. .+|+.-....++.+| +..+++ ......
T Consensus 93 l~d~~~~s~~~~l~~~~~--------------~~qdl~W~~~r--d~Srd~LlaIh~ss~lvLw--ntdtG~--k~Wk~~ 152 (1062)
T KOG1912|consen 93 LVDFVLASVINWLSHSND--------------SVQDLCWVPAR--DDSRDVLLAIHGSSTLVLW--NTDTGE--KFWKYD 152 (1062)
T ss_pred EEEehhhhhhhhhcCCCc--------------chhheeeeecc--CcchheeEEecCCcEEEEE--EccCCc--eeeccc
Confidence 999998876666654443 67888886322 233 567777778899999 455665 555555
Q ss_pred cccCceeEEEEcC-CCCEEEEecCCCcEEEEEec
Q 021036 240 AHDQVVTGLAWAF-DGCCLYSCSQDNFVRSWIFH 272 (318)
Q Consensus 240 ~h~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~ 272 (318)
.......|+.++| |.+.+..-+..|.+.+.+.-
T Consensus 153 ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l 186 (1062)
T KOG1912|consen 153 YSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDL 186 (1062)
T ss_pred cCCcceeeeeeCCCCcceEEEEccCceEEEEecc
Confidence 5566778899999 45566666667887777654
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.1e-05 Score=68.11 Aligned_cols=156 Identities=16% Similarity=0.119 Sum_probs=104.4
Q ss_pred eEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEEE
Q 021036 20 TVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLW 99 (318)
Q Consensus 20 ~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw 99 (318)
++-||.+ -|.+-|..+-+.++.+.. |+.. +..+.|.|...-.. -...+...-+||++...|.|.+|
T Consensus 29 iAygshs-lV~VVDs~s~q~iqsie~----h~s~---V~~VrWap~~~p~~------llS~~~~~lliAsaD~~GrIil~ 94 (1062)
T KOG1912|consen 29 IAYGSHS-LVSVVDSRSLQLIQSIEL----HQSA---VTSVRWAPAPSPRD------LLSPSSSQLLIASADISGRIILV 94 (1062)
T ss_pred EEEecCc-eEEEEehhhhhhhhcccc----Cccc---eeEEEeccCCCchh------ccCccccceeEEeccccCcEEEE
Confidence 3444443 577778888887777766 4444 45599999761111 11111123578899999999999
Q ss_pred EccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccc
Q 021036 100 RICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVP 179 (318)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~ 179 (318)
|...+ ..+..+..|.+++..++|-|...+ ..+.|+.-....++.+|+..+|+..........
T Consensus 95 d~~~~--------------s~~~~l~~~~~~~qdl~W~~~rd~---Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~- 156 (1062)
T KOG1912|consen 95 DFVLA--------------SVINWLSHSNDSVQDLCWVPARDD---SRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHE- 156 (1062)
T ss_pred Eehhh--------------hhhhhhcCCCcchhheeeeeccCc---chheeEEecCCcEEEEEEccCCceeeccccCCc-
Confidence 99874 344567788999999999776532 235677777778999999999998877654332
Q ss_pred cccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEee
Q 021036 180 FSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWK 224 (318)
Q Consensus 180 ~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~ 224 (318)
...|+.++ |-+.+.|..-+..|.+-+-+
T Consensus 157 -------------iLs~f~~D----Pfd~rh~~~l~s~g~vl~~~ 184 (1062)
T KOG1912|consen 157 -------------ILSCFRVD----PFDSRHFCVLGSKGFVLSCK 184 (1062)
T ss_pred -------------ceeeeeeC----CCCcceEEEEccCceEEEEe
Confidence 45556665 45666666666666666553
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.7e-05 Score=64.51 Aligned_cols=57 Identities=7% Similarity=-0.096 Sum_probs=38.8
Q ss_pred ceeEEEEcCCCCEEEEecCC---CcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 244 VVTGLAWAFDGCCLYSCSQD---NFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 244 ~v~~~~~~~~~~~l~s~~~d---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
.=..+.|+|.+++++.++-| |.+-+||..++....-..... ...-+.|+||++++.+
T Consensus 317 ~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~---------------n~s~~~wspd~qF~~~ 376 (561)
T COG5354 317 KRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL---------------NTSYCDWSPDGQFYDT 376 (561)
T ss_pred ccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC---------------CceEeeccCCceEEEe
Confidence 33567899999999987765 789999988765543222221 2355678888887655
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.5e-05 Score=66.46 Aligned_cols=67 Identities=27% Similarity=0.276 Sum_probs=49.1
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeC---------
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSS--------- 155 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~--------- 155 (318)
.||++-...| |.+|--.+ ...++.+ .| ..|.-+.| +|+.+||+|=+.
T Consensus 223 TYL~t~Hk~G-I~lWGG~~--------------f~r~~RF-~H-p~Vq~idf-------SP~EkYLVT~s~~p~~~~~~d 278 (698)
T KOG2314|consen 223 TYLVTFHKQG-IALWGGES--------------FDRIQRF-YH-PGVQFIDF-------SPNEKYLVTYSPEPIIVEEDD 278 (698)
T ss_pred eEEEEEeccc-eeeecCcc--------------HHHHHhc-cC-CCceeeec-------CCccceEEEecCCccccCccc
Confidence 9999988776 88896554 2223333 23 35788999 899999999652
Q ss_pred --CCcEEEEECCCcceeeeecc
Q 021036 156 --DGSVRIWDGYIQELQKSAEA 175 (318)
Q Consensus 156 --d~~v~iwd~~~~~~~~~~~~ 175 (318)
...++|||+++|.....+..
T Consensus 279 ~e~~~l~IWDI~tG~lkrsF~~ 300 (698)
T KOG2314|consen 279 NEGQQLIIWDIATGLLKRSFPV 300 (698)
T ss_pred CCCceEEEEEccccchhcceec
Confidence 25799999999988776654
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00068 Score=54.12 Aligned_cols=210 Identities=14% Similarity=0.111 Sum_probs=116.9
Q ss_pred CCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeee---ccccccEEEEEeeeecCCCCCCCcEEEEEeCC
Q 021036 80 SSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLF---QAHNSWITSISLAVLSSDSSNPQVLLVTGSSD 156 (318)
Q Consensus 80 ~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d 156 (318)
.+.+|++||.- .|..|.|=..++.= ...+... +.....=+.++| ++++.+|+.+...
T Consensus 5 ~~~~Gk~lAi~-qd~~iEiRsa~Ddf------------~si~~kcqVpkD~~PQWRkl~W-------SpD~tlLa~a~S~ 64 (282)
T PF15492_consen 5 LSSDGKLLAIL-QDQCIEIRSAKDDF------------SSIIGKCQVPKDPNPQWRKLAW-------SPDCTLLAYAEST 64 (282)
T ss_pred ecCCCcEEEEE-eccEEEEEeccCCc------------hheeEEEecCCCCCchheEEEE-------CCCCcEEEEEcCC
Confidence 34556777765 45666665554321 0111111 122223478999 9999999999999
Q ss_pred CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCC-ceEEEEEeCCCcEEEeeecc-CCCeeeE
Q 021036 157 GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPR-LMLLAVGKGSGSFDLWKCDI-SCNKFDK 234 (318)
Q Consensus 157 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~-~~~l~~~~~dg~i~vw~~~~-~~~~~~~ 234 (318)
|+|+++|+.... +..+..... + ...-...|..+.|.....++. ...|++-...|.++-|-+.. ....++.
T Consensus 65 G~i~vfdl~g~~-lf~I~p~~~-~------~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e 136 (282)
T PF15492_consen 65 GTIRVFDLMGSE-LFVIPPAMS-F------PGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQE 136 (282)
T ss_pred CeEEEEecccce-eEEcCcccc-c------CCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCccee
Confidence 999999997643 334333211 0 011233566666642111111 33566666788888775433 2233444
Q ss_pred eeeee--c-ccCceeEEEEcCCCCEEEEecC-C----------CcEEEEEecCCceeeeecCCCCCCcc-----------
Q 021036 235 VGSYN--A-HDQVVTGLAWAFDGCCLYSCSQ-D----------NFVRSWIFHGNSLSQVSIPTNTPGLQ----------- 289 (318)
Q Consensus 235 ~~~~~--~-h~~~v~~~~~~~~~~~l~s~~~-d----------~~v~iwd~~~~~~~~~~~~~~~~~~~----------- 289 (318)
.+++. . +...|.++.|+|..++|+.|+. . .-+.-|.+-++...-.........+.
T Consensus 137 ~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~ 216 (282)
T PF15492_consen 137 NHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRI 216 (282)
T ss_pred eEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeec
Confidence 44443 2 4678999999999887776652 1 13556665443322111111111110
Q ss_pred cc----ccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 290 SC----TDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 290 ~~----~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
.. .........|..|..||||+.||+.|
T Consensus 217 ~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih 248 (282)
T PF15492_consen 217 PSFKFFSRQGQEQDGIFKMSLSPDGSLLACIH 248 (282)
T ss_pred cceeeeeccccCCCceEEEEECCCCCEEEEEE
Confidence 00 00112346899999999999999986
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00067 Score=54.57 Aligned_cols=203 Identities=13% Similarity=0.105 Sum_probs=107.5
Q ss_pred ceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccc-cccEEEEE
Q 021036 57 SLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAH-NSWITSIS 135 (318)
Q Consensus 57 ~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~ 135 (318)
+..++|+|+. +.++++....+.|...+.+ |+ .++.+.-. .+..-.|+
T Consensus 24 ~SGLTy~pd~-----------------~tLfaV~d~~~~i~els~~-G~--------------vlr~i~l~g~~D~EgI~ 71 (248)
T PF06977_consen 24 LSGLTYNPDT-----------------GTLFAVQDEPGEIYELSLD-GK--------------VLRRIPLDGFGDYEGIT 71 (248)
T ss_dssp EEEEEEETTT-----------------TEEEEEETTTTEEEEEETT-----------------EEEEEE-SS-SSEEEEE
T ss_pred ccccEEcCCC-----------------CeEEEEECCCCEEEEEcCC-CC--------------EEEEEeCCCCCCceeEE
Confidence 3348888876 4688888888888888864 33 34444322 34578899
Q ss_pred eeeecCCCCCCCcEEEEEeCCCcEEEEECCCcc-eeee--ecccccccccceeeeeecccceeEEEEeeccCCCCceEEE
Q 021036 136 LAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQE-LQKS--AEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLA 212 (318)
Q Consensus 136 ~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~ 212 (318)
+ ..++.++++.-.++.+.++++.... .... ...... .....+...+-.++|+ +.++.|+
T Consensus 72 y-------~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l------~~~~~~N~G~EGla~D-----~~~~~L~ 133 (248)
T PF06977_consen 72 Y-------LGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISL------GFPNKGNKGFEGLAYD-----PKTNRLF 133 (248)
T ss_dssp E--------STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---------S---SS--EEEEEE-----TTTTEEE
T ss_pred E-------ECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEec------ccccCCCcceEEEEEc-----CCCCEEE
Confidence 9 7778777766678999999884321 1111 000000 0012234568899999 7777676
Q ss_pred EEeCCCcEEEeeecc--CCCeeeEeeeee------cccCceeEEEEcCC-CCEEEEecCCCcEEEEEecCCceeeeecCC
Q 021036 213 VGKGSGSFDLWKCDI--SCNKFDKVGSYN------AHDQVVTGLAWAFD-GCCLYSCSQDNFVRSWIFHGNSLSQVSIPT 283 (318)
Q Consensus 213 ~~~~dg~i~vw~~~~--~~~~~~~~~~~~------~h~~~v~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 283 (318)
.+-......+|.++. ..... .+.... .....+.+++++|. +++++.......|..+|..+.....+....
T Consensus 134 v~kE~~P~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~ 212 (248)
T PF06977_consen 134 VAKERKPKRLYEVNGFPGGFDL-FVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDR 212 (248)
T ss_dssp EEEESSSEEEEEEESTT-SS---EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-ST
T ss_pred EEeCCCChhhEEEccccCccce-eeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCC
Confidence 777666777886554 11111 111111 13346789999996 667788888899999996554444444333
Q ss_pred CCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 284 NTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 284 ~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
... .+...-..--+|+|.++|.+.++.
T Consensus 213 g~~------gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 213 GFH------GLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp TGG------G-SS---SEEEEEE-TT--EEEEE
T ss_pred ccc------CcccccCCccEEEECCCCCEEEEc
Confidence 210 111111245799999999876653
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.0001 Score=70.54 Aligned_cols=154 Identities=11% Similarity=0.036 Sum_probs=96.4
Q ss_pred cCCCCCccEEEEecC---C---CcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEE
Q 021036 78 NGSSNWFSILAVGGR---S---GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLV 151 (318)
Q Consensus 78 ~~~s~~~~~l~~g~~---d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~ 151 (318)
+.|-.||.++|+.+. . ..+|||+.+ |. +...-..-.+-=.+++| .|.|++|+
T Consensus 215 ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~--------------L~stSE~v~gLe~~l~W-------rPsG~lIA 272 (928)
T PF04762_consen 215 ISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GE--------------LQSTSEPVDGLEGALSW-------RPSGNLIA 272 (928)
T ss_pred EEECCCCcEEEEEEEEcCCCceeEEEEECCC-ce--------------EEeccccCCCccCCccC-------CCCCCEEE
Confidence 334445599998764 3 468999987 22 22221111222357899 89999999
Q ss_pred EEeC---CCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccC
Q 021036 152 TGSS---DGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDIS 228 (318)
Q Consensus 152 s~~~---d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~ 228 (318)
+... ...|.+|.- +|-....|.... ......|..|.|+ +++..||....|. |.+| ...
T Consensus 273 ~~q~~~~~~~VvFfEr-NGLrhgeF~l~~----------~~~~~~v~~l~Wn-----~ds~iLAv~~~~~-vqLW--t~~ 333 (928)
T PF04762_consen 273 SSQRLPDRHDVVFFER-NGLRHGEFTLRF----------DPEEEKVIELAWN-----SDSEILAVWLEDR-VQLW--TRS 333 (928)
T ss_pred EEEEcCCCcEEEEEec-CCcEeeeEecCC----------CCCCceeeEEEEC-----CCCCEEEEEecCC-ceEE--Eee
Confidence 8875 345666653 343333333221 1123478999999 9999999987555 9999 566
Q ss_pred CCeeeEeeeeecc-cCceeEEEEcCCC-CEEEEecCCCcEEEEEec
Q 021036 229 CNKFDKVGSYNAH-DQVVTGLAWAFDG-CCLYSCSQDNFVRSWIFH 272 (318)
Q Consensus 229 ~~~~~~~~~~~~h-~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~ 272 (318)
+..|...+++.-. ...+..+.|+|.. ..|.....+|.+..++..
T Consensus 334 NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~ 379 (928)
T PF04762_consen 334 NYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFA 379 (928)
T ss_pred CCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEE
Confidence 7776555555432 2345569999964 456666666777666553
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.0004 Score=56.01 Aligned_cols=195 Identities=16% Similarity=0.023 Sum_probs=109.1
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEE
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVS 97 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~ 97 (318)
..+++++.++.+..||..+++.+-........... . ... +..++.+..++.+.
T Consensus 37 ~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~-------~--~~~------------------~~~v~v~~~~~~l~ 89 (238)
T PF13360_consen 37 GRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA-------P--VVD------------------GGRVYVGTSDGSLY 89 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG-------E--EEE------------------TTEEEEEETTSEEE
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEeeccccccce-------e--eec------------------ccccccccceeeeE
Confidence 44566679999999999888765554432110000 0 011 25667677888999
Q ss_pred EEEccCCccccccccccCCceeEEee-ecccc---ccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeee
Q 021036 98 LWRICVPKCYSVEDCKVPTTAVLIGL-FQAHN---SWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSA 173 (318)
Q Consensus 98 iw~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~---~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 173 (318)
.+|..+|+. +.. ..... ........ ...++.++.+..++.|..+|..+|+.+...
T Consensus 90 ~~d~~tG~~--------------~W~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~ 148 (238)
T PF13360_consen 90 ALDAKTGKV--------------LWSIYLTSSPPAGVRSSSSP-------AVDGDRLYVGTSSGKLVALDPKTGKLLWKY 148 (238)
T ss_dssp EEETTTSCE--------------EEEEEE-SSCTCSTB--SEE-------EEETTEEEEEETCSEEEEEETTTTEEEEEE
T ss_pred ecccCCcce--------------eeeeccccccccccccccCc-------eEecCEEEEEeccCcEEEEecCCCcEEEEe
Confidence 999888763 222 11110 11122222 223667888888999999999999988776
Q ss_pred cccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCC
Q 021036 174 EAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFD 253 (318)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 253 (318)
.....+.... . . ....+..-.+. .++ .++.++.++.+.-+ |..+++ .+.+.. ...+... ....
T Consensus 149 ~~~~~~~~~~--~-~-~~~~~~~~~~~-----~~~-~v~~~~~~g~~~~~--d~~tg~--~~w~~~--~~~~~~~-~~~~ 211 (238)
T PF13360_consen 149 PVGEPRGSSP--I-S-SFSDINGSPVI-----SDG-RVYVSSGDGRVVAV--DLATGE--KLWSKP--ISGIYSL-PSVD 211 (238)
T ss_dssp ESSTT-SS----E-E-EETTEEEEEEC-----CTT-EEEEECCTSSEEEE--ETTTTE--EEEEEC--SS-ECEC-EECC
T ss_pred ecCCCCCCcc--e-e-eecccccceEE-----ECC-EEEEEcCCCeEEEE--ECCCCC--EEEEec--CCCccCC-ceee
Confidence 6533210000 0 0 00011111121 334 66666667753333 666776 222222 2222221 3456
Q ss_pred CCEEEEecCCCcEEEEEecCCcee
Q 021036 254 GCCLYSCSQDNFVRSWIFHGNSLS 277 (318)
Q Consensus 254 ~~~l~s~~~d~~v~iwd~~~~~~~ 277 (318)
+..++.++.++.|..||+++++..
T Consensus 212 ~~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 212 GGTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp CTEEEEEETTTEEEEEETTTTEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEE
Confidence 777777779999999999987653
|
... |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.5e-06 Score=78.64 Aligned_cols=168 Identities=18% Similarity=0.240 Sum_probs=100.7
Q ss_pred CCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCC
Q 021036 68 LSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQ 147 (318)
Q Consensus 68 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~ 147 (318)
+..|...-+|++|+.+.+.|+.|+..|.|+++++.+|. ......+|.++|+-+.- +.+|
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~--------------~e~s~ncH~SavT~veP-------s~dg 1155 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS--------------MEESVNCHQSAVTLVEP-------SVDG 1155 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCcc--------------ccccccccccccccccc-------cCCc
Confidence 44566678899999999999999999999999999864 34566778888877766 6666
Q ss_pred cEEEEEeCCC--cEEEEECCC-cceeeeecccc-------cccccce---------ee------------eeecccceeE
Q 021036 148 VLLVTGSSDG--SVRIWDGYI-QELQKSAEAHC-------VPFSLLK---------EV------------VTVNTVPISV 196 (318)
Q Consensus 148 ~~l~s~~~d~--~v~iwd~~~-~~~~~~~~~~~-------~~~~~~~---------~~------------~~~~~~~v~~ 196 (318)
..+++.+.-. -..+|++.+ +...+++.... ..++.+. .+ .......-++
T Consensus 1156 s~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~ 1235 (1516)
T KOG1832|consen 1156 STQLTSSSSSSPLSALWDASSTGGPRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNL 1235 (1516)
T ss_pred ceeeeeccccCchHHHhccccccCccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccc
Confidence 6655554322 355676653 22222222110 0000000 00 0011222355
Q ss_pred EEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCce
Q 021036 197 LSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSL 276 (318)
Q Consensus 197 l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 276 (318)
..|+ |+..+++- || .+| |.+..+ .++.|...+..+ .-.|+|.|.-++.-++ |||+++-.+
T Consensus 1236 a~Fs-----P~D~LIln---dG--vLW--DvR~~~--aIh~FD~ft~~~-~G~FHP~g~eVIINSE-----IwD~RTF~l 1295 (1516)
T KOG1832|consen 1236 AHFS-----PCDTLILN---DG--VLW--DVRIPE--AIHRFDQFTDYG-GGGFHPSGNEVIINSE-----IWDMRTFKL 1295 (1516)
T ss_pred cccC-----CCcceEee---Cc--eee--eeccHH--HHhhhhhheecc-cccccCCCceEEeech-----hhhhHHHHH
Confidence 5666 77766653 44 688 444443 566665444332 2359999998777663 899987443
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00016 Score=62.82 Aligned_cols=135 Identities=13% Similarity=0.004 Sum_probs=83.3
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEE
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWD 163 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd 163 (318)
+..++.++.+|.+..+|.++++. +-.... ....... ..+..++.++.||.+..+|
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~--------------~W~~~~--~~~~~p~---------~~~~~vyv~~~~G~l~~~d 295 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRV--------------LWKRDA--SSYQGPA---------VDDNRLYVTDADGVVVALD 295 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcE--------------EEeecc--CCccCce---------EeCCEEEEECCCCeEEEEE
Confidence 35777788899999999988652 222211 1111111 2345778888999999999
Q ss_pred CCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccC
Q 021036 164 GYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQ 243 (318)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~ 243 (318)
..+++.+........ ........ .+..+++++.+|.++++ +..+++ .+.+++.+..
T Consensus 296 ~~tG~~~W~~~~~~~-------------~~~ssp~i-------~g~~l~~~~~~G~l~~~--d~~tG~--~~~~~~~~~~ 351 (377)
T TIGR03300 296 RRSGSELWKNDELKY-------------RQLTAPAV-------VGGYLVVGDFEGYLHWL--SREDGS--FVARLKTDGS 351 (377)
T ss_pred CCCCcEEEccccccC-------------CccccCEE-------ECCEEEEEeCCCEEEEE--ECCCCC--EEEEEEcCCC
Confidence 999987765421110 01111122 35688889999999998 666666 5556654443
Q ss_pred cee-EEEEcCCCCEEEEecCCCcEEEE
Q 021036 244 VVT-GLAWAFDGCCLYSCSQDNFVRSW 269 (318)
Q Consensus 244 ~v~-~~~~~~~~~~l~s~~~d~~v~iw 269 (318)
.+. ...+. +..|+.++.||.|..|
T Consensus 352 ~~~~sp~~~--~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 352 GIASPPVVV--GDGLLVQTRDGDLYAF 376 (377)
T ss_pred ccccCCEEE--CCEEEEEeCCceEEEe
Confidence 322 12222 3458888899998765
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00086 Score=58.28 Aligned_cols=147 Identities=12% Similarity=-0.015 Sum_probs=85.4
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeec---ccc--ccEEEEEeeeecCCCCCCCcEEEEEeCCCcE
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQ---AHN--SWITSISLAVLSSDSSNPQVLLVTGSSDGSV 159 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~--~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v 159 (318)
..++.+..+|.+..+|.++++..- ...+. +.. .....+.-.| .-.+..++.++.+|.+
T Consensus 191 ~~v~~~~~~g~v~ald~~tG~~~W------------~~~~~~~~g~~~~~~~~~~~~~p-----~~~~~~vy~~~~~g~l 253 (377)
T TIGR03300 191 GGVLVGFAGGKLVALDLQTGQPLW------------EQRVALPKGRTELERLVDVDGDP-----VVDGGQVYAVSYQGRV 253 (377)
T ss_pred CEEEEECCCCEEEEEEccCCCEee------------eeccccCCCCCchhhhhccCCcc-----EEECCEEEEEEcCCEE
Confidence 467788889999999998875320 00000 000 0000010000 0124577888889999
Q ss_pred EEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeee
Q 021036 160 RIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYN 239 (318)
Q Consensus 160 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 239 (318)
..+|..+++........ ....... .+..++.++.+|.+..+ |..+++ .+.+..
T Consensus 254 ~a~d~~tG~~~W~~~~~----------------~~~~p~~-------~~~~vyv~~~~G~l~~~--d~~tG~--~~W~~~ 306 (377)
T TIGR03300 254 AALDLRSGRVLWKRDAS----------------SYQGPAV-------DDNRLYVTDADGVVVAL--DRRSGS--ELWKND 306 (377)
T ss_pred EEEECCCCcEEEeeccC----------------CccCceE-------eCCEEEEECCCCeEEEE--ECCCCc--EEEccc
Confidence 99999999876654311 1111122 34567777889999998 555665 333321
Q ss_pred cccC-ceeEEEEcCCCCEEEEecCCCcEEEEEecCCcee
Q 021036 240 AHDQ-VVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLS 277 (318)
Q Consensus 240 ~h~~-~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 277 (318)
.... ....... .+..+++++.+|.|+++|..+++..
T Consensus 307 ~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~ 343 (377)
T TIGR03300 307 ELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFV 343 (377)
T ss_pred cccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEE
Confidence 1111 1111111 3668899999999999999887665
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.06 E-value=7.8e-05 Score=61.91 Aligned_cols=87 Identities=14% Similarity=0.165 Sum_probs=68.3
Q ss_pred eecccccCCCCcccccccCCCCCcc-EEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeee
Q 021036 61 AWSPVLRLSSKKYPVPQNGSSNWFS-ILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVL 139 (318)
Q Consensus 61 ~w~p~~~~~~~~~~v~~~~~s~~~~-~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~ 139 (318)
.+.+..-+.+|...|.++++|+..+ ++..++.+..|+|.|+++.. .+..+..+ ..+++++|
T Consensus 182 ~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~--------------~vssy~a~-~~~wSC~w--- 243 (463)
T KOG1645|consen 182 DFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC--------------VVSSYIAY-NQIWSCCW--- 243 (463)
T ss_pred CcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccce--------------eeeheecc-CCceeeee---
Confidence 3444445667778899999999866 78889999999999999843 44556666 78999999
Q ss_pred cCCCCCCCcEEEEEeCCCcEEEEECCCcc
Q 021036 140 SSDSSNPQVLLVTGSSDGSVRIWDGYIQE 168 (318)
Q Consensus 140 ~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 168 (318)
.-.+..+|..|...|.|.+||++..+
T Consensus 244 ---Dlde~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 244 ---DLDERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred ---ccCCcceeEEeccCceEEEEEccCCC
Confidence 34445678888899999999999754
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00052 Score=64.84 Aligned_cols=198 Identities=11% Similarity=0.073 Sum_probs=120.0
Q ss_pred ccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEE
Q 021036 73 YPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVT 152 (318)
Q Consensus 73 ~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s 152 (318)
..|.++.+-.+++-++.+...|.|.+-|.++.. ......-...|.+++| +++++.++.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~---------------~eivg~vd~GI~aasw-------S~Dee~l~l 126 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLE---------------LEIVGNVDNGISAASW-------SPDEELLAL 126 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccc---------------eeeeeeccCceEEEee-------cCCCcEEEE
Confidence 456777777777888889999999999887643 2223334678999999 999999999
Q ss_pred EeCCCcEEEEECC----Cccee-------------------eeeccccc---ccccce-----eeeeecccceeEEEEee
Q 021036 153 GSSDGSVRIWDGY----IQELQ-------------------KSAEAHCV---PFSLLK-----EVVTVNTVPISVLSLIL 201 (318)
Q Consensus 153 ~~~d~~v~iwd~~----~~~~~-------------------~~~~~~~~---~~~~~~-----~~~~~~~~~v~~l~~~~ 201 (318)
.+.++++.+.+-. ..+.+ ..+.+... +..... .....+. .-..++|.
T Consensus 127 iT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~-~~~~IsWR- 204 (1265)
T KOG1920|consen 127 ITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDD-HKTSISWR- 204 (1265)
T ss_pred EeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhcc-CCceEEEc-
Confidence 9998888876541 11111 01111000 000000 0000111 12357887
Q ss_pred ccCCCCceEEEEE-----eCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEe---cCCCcEEEEEecC
Q 021036 202 PVQSPRLMLLAVG-----KGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSC---SQDNFVRSWIFHG 273 (318)
Q Consensus 202 ~~~~~~~~~l~~~-----~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~---~~d~~v~iwd~~~ 273 (318)
.||++||+. .....|++|| .. +.......- ..+.=.+++|-|.|..+++- ..|+.|.+|..++
T Consensus 205 ----gDg~~fAVs~~~~~~~~RkirV~d--rE-g~Lns~se~--~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNG 275 (1265)
T KOG1920|consen 205 ----GDGEYFAVSFVESETGTRKIRVYD--RE-GALNSTSEP--VEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNG 275 (1265)
T ss_pred ----cCCcEEEEEEEeccCCceeEEEec--cc-chhhcccCc--ccccccceeecCCCCeEeeeeecCCCCcEEEEecCC
Confidence 899999993 3337899994 33 221111111 11223568999999988875 4566899998765
Q ss_pred Ccee--eeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 274 NSLS--QVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 274 ~~~~--~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
-... .+....+. ..|..++|+.++..||+.
T Consensus 276 L~hg~f~l~~p~de-------------~~ve~L~Wns~sdiLAv~ 307 (1265)
T KOG1920|consen 276 LRHGEFVLPFPLDE-------------KEVEELAWNSNSDILAVV 307 (1265)
T ss_pred ccccccccCCcccc-------------cchheeeecCCCCceeee
Confidence 2222 22222221 248999999999998873
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=6.7e-05 Score=66.64 Aligned_cols=160 Identities=16% Similarity=0.137 Sum_probs=101.0
Q ss_pred CccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEE
Q 021036 83 WFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIW 162 (318)
Q Consensus 83 ~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iw 162 (318)
.+++++.|+.-|.+.+|+...++. ......+-...+..... +++..+++.|+..|.|.++
T Consensus 44 t~~~l~~GsS~G~lyl~~R~~~~~-------------~~~~~~~~~~~~~~~~v-------s~~e~lvAagt~~g~V~v~ 103 (726)
T KOG3621|consen 44 TEEYLAMGSSAGSVYLYNRHTGEM-------------RKLKNEGATGITCVRSV-------SSVEYLVAAGTASGRVSVF 103 (726)
T ss_pred CCceEEEecccceEEEEecCchhh-------------hcccccCccceEEEEEe-------cchhHhhhhhcCCceEEee
Confidence 358999999999999999987652 12222233444555666 7778888888999999999
Q ss_pred ECCCcceeee-ecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecc
Q 021036 163 DGYIQELQKS-AEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAH 241 (318)
Q Consensus 163 d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h 241 (318)
-+..+..... +..+. ...|+..|++++|+ +++..+++|...|+|.+-.++.+..-....+.+..-
T Consensus 104 ql~~~~p~~~~~~t~~---------d~~~~~rVTal~Ws-----~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ 169 (726)
T KOG3621|consen 104 QLNKELPRDLDYVTPC---------DKSHKCRVTALEWS-----KNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSE 169 (726)
T ss_pred hhhccCCCcceeeccc---------cccCCceEEEEEec-----ccccEEeecCCCceEEEEEechhhhhccccceeecc
Confidence 8776332211 11111 12266789999999 999999999999999988666532111233344445
Q ss_pred cCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeee
Q 021036 242 DQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQV 279 (318)
Q Consensus 242 ~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~ 279 (318)
.+.|-.+++. ..+|+.++.-.. .++++..+...++
T Consensus 170 ds~IVQlD~~--q~~LLVStl~r~-~Lc~tE~eti~QI 204 (726)
T KOG3621|consen 170 DSEIVQLDYL--QSYLLVSTLTRC-ILCQTEAETITQI 204 (726)
T ss_pred CcceEEeecc--cceehHhhhhhh-heeecchhHHHHh
Confidence 5667666543 334444333333 3566655444443
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00011 Score=64.14 Aligned_cols=74 Identities=18% Similarity=0.240 Sum_probs=60.2
Q ss_pred cccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCC
Q 021036 126 AHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQS 205 (318)
Q Consensus 126 ~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 205 (318)
.....|.+.++ +++.+.|+.|+.||+|.+||...+..... . .....+.++|+
T Consensus 257 pL~s~v~~ca~-------sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-k---------------a~~~P~~iaWH----- 308 (545)
T PF11768_consen 257 PLPSQVICCAR-------SPSEDKLVLGCEDGSIILYDTTRGVTLLA-K---------------AEFIPTLIAWH----- 308 (545)
T ss_pred ecCCcceEEec-------CcccceEEEEecCCeEEEEEcCCCeeeee-e---------------ecccceEEEEc-----
Confidence 45678999999 89999999999999999999887633322 1 11256789999
Q ss_pred CCceEEEEEeCCCcEEEeeecc
Q 021036 206 PRLMLLAVGKGSGSFDLWKCDI 227 (318)
Q Consensus 206 ~~~~~l~~~~~dg~i~vw~~~~ 227 (318)
|+|.++++|+..|.+.+||+-+
T Consensus 309 p~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 309 PDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred CCCcEEEEEcCCceEEEEEeec
Confidence 9999999999999999997543
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.4e-06 Score=73.75 Aligned_cols=149 Identities=17% Similarity=0.171 Sum_probs=93.1
Q ss_pred ccEEEEec----CCCcEEEEEccCCccccccccccCCceeEEeeecc-ccccEEEEEeeeecCCCCCCCcEEEEEeCCCc
Q 021036 84 FSILAVGG----RSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQA-HNSWITSISLAVLSSDSSNPQVLLVTGSSDGS 158 (318)
Q Consensus 84 ~~~l~~g~----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~ 158 (318)
.+.||+|- .|..+.|||+.+.-.. ++.-..+.+ ......+++| ..+.+++.+|...+.
T Consensus 115 tn~LAagldkhrnds~~~Iwdi~s~ltv----------Pke~~~fs~~~l~gqns~cw-------lrd~klvlaGm~sr~ 177 (783)
T KOG1008|consen 115 TNHLAAGLDKHRNDSSLKIWDINSLLTV----------PKESPLFSSSTLDGQNSVCW-------LRDTKLVLAGMTSRS 177 (783)
T ss_pred HHHHHhhhhhhcccCCccceecccccCC----------CccccccccccccCcccccc-------ccCcchhhcccccch
Confidence 46777773 4667999999875221 111111222 3445668999 678888999999999
Q ss_pred EEEEECCCcce-eeeecccccccccceeeeeecccceeEEEEeeccCCC-CceEEEEEeCCCcEEEeeeccCCCeeeEee
Q 021036 159 VRIWDGYIQEL-QKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSP-RLMLLAVGKGSGSFDLWKCDISCNKFDKVG 236 (318)
Q Consensus 159 v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 236 (318)
+.++|++.... ...+ ....+..+.++ | .++++++-. ||.|.+||- .+.-+ .++.
T Consensus 178 ~~ifdlRqs~~~~~sv----------------nTk~vqG~tVd-----p~~~nY~cs~~-dg~iAiwD~-~rnie-npl~ 233 (783)
T KOG1008|consen 178 VHIFDLRQSLDSVSSV----------------NTKYVQGITVD-----PFSPNYFCSNS-DGDIAIWDT-YRNIE-NPLQ 233 (783)
T ss_pred hhhhhhhhhhhhhhhh----------------hhhhcccceec-----CCCCCceeccc-cCceeeccc-hhhhc-cHHH
Confidence 99999984321 1111 11245667777 5 778887766 999999952 22211 1333
Q ss_pred eeeccc----CceeEEEEcCCCC-EEEEecCC-CcEEEEEecC
Q 021036 237 SYNAHD----QVVTGLAWAFDGC-CLYSCSQD-NFVRSWIFHG 273 (318)
Q Consensus 237 ~~~~h~----~~v~~~~~~~~~~-~l~s~~~d-~~v~iwd~~~ 273 (318)
.....+ ..+..++|.|... .+++...| ++|+++|+..
T Consensus 234 ~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 234 IILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred HHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 332222 2488999999633 45555544 7899999863
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0064 Score=49.38 Aligned_cols=144 Identities=15% Similarity=0.075 Sum_probs=87.7
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCC-CCCcEEEEEeCCCcEEEE
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSS-NPQVLLVTGSSDGSVRIW 162 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~-~~~~~l~s~~~d~~v~iw 162 (318)
+.++++--..+.|..|+..+++. ..+... . ...+.+ . +++.+ +.+..+ .+.++
T Consensus 12 g~l~~~D~~~~~i~~~~~~~~~~---------------~~~~~~-~-~~G~~~-------~~~~g~l-~v~~~~-~~~~~ 65 (246)
T PF08450_consen 12 GRLYWVDIPGGRIYRVDPDTGEV---------------EVIDLP-G-PNGMAF-------DRPDGRL-YVADSG-GIAVV 65 (246)
T ss_dssp TEEEEEETTTTEEEEEETTTTEE---------------EEEESS-S-EEEEEE-------ECTTSEE-EEEETT-CEEEE
T ss_pred CEEEEEEcCCCEEEEEECCCCeE---------------EEEecC-C-CceEEE-------EccCCEE-EEEEcC-ceEEE
Confidence 47888888899999999987541 112221 2 566777 4 55544 445444 44555
Q ss_pred ECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCC--------CcEEEeeeccCCCeeeE
Q 021036 163 DGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGS--------GSFDLWKCDISCNKFDK 234 (318)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~d--------g~i~vw~~~~~~~~~~~ 234 (318)
|..+++.......... .......+.+++. ++|++.++.... |.|..+ +.. ++...
T Consensus 66 d~~~g~~~~~~~~~~~---------~~~~~~~ND~~vd-----~~G~ly~t~~~~~~~~~~~~g~v~~~--~~~-~~~~~ 128 (246)
T PF08450_consen 66 DPDTGKVTVLADLPDG---------GVPFNRPNDVAVD-----PDGNLYVTDSGGGGASGIDPGSVYRI--DPD-GKVTV 128 (246)
T ss_dssp ETTTTEEEEEEEEETT---------CSCTEEEEEEEE------TTS-EEEEEECCBCTTCGGSEEEEEE--ETT-SEEEE
T ss_pred ecCCCcEEEEeeccCC---------CcccCCCceEEEc-----CCCCEEEEecCCCccccccccceEEE--CCC-CeEEE
Confidence 9888754433332100 0023367899999 999977776643 335554 555 44222
Q ss_pred eeeeecccCceeEEEEcCCCCEEE-EecCCCcEEEEEecC
Q 021036 235 VGSYNAHDQVVTGLAWAFDGCCLY-SCSQDNFVRSWIFHG 273 (318)
Q Consensus 235 ~~~~~~h~~~v~~~~~~~~~~~l~-s~~~d~~v~iwd~~~ 273 (318)
+...-.....++|+|+++.|+ +-+..+.|..+++..
T Consensus 129 ---~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~ 165 (246)
T PF08450_consen 129 ---VADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDA 165 (246)
T ss_dssp ---EEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEET
T ss_pred ---EecCcccccceEECCcchheeecccccceeEEEeccc
Confidence 222344568999999998664 667788899999864
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0001 Score=61.18 Aligned_cols=80 Identities=18% Similarity=0.112 Sum_probs=64.3
Q ss_pred EeeeccccccEEEEEeeeecCCCCCCCc-EEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEE
Q 021036 121 IGLFQAHNSWITSISLAVLSSDSSNPQV-LLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSL 199 (318)
Q Consensus 121 ~~~~~~h~~~v~~~~~~p~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 199 (318)
...+.+|...|.+++| ++..+ ++..++.+..|+|.|+++...+..+..+. .+.+++|
T Consensus 186 sq~lp~~g~~Irdlaf-------Sp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~---------------~~wSC~w 243 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAF-------SPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYN---------------QIWSCCW 243 (463)
T ss_pred hhcccccchhhhhhcc-------CccccceeeeeccCceEEEEecccceeeeheeccC---------------Cceeeee
Confidence 3456678889999999 55554 78899999999999999988777766553 7889999
Q ss_pred eeccCCCCceEEEEEeCCCcEEEeeec
Q 021036 200 ILPVQSPRLMLLAVGKGSGSFDLWKCD 226 (318)
Q Consensus 200 ~~~~~~~~~~~l~~~~~dg~i~vw~~~ 226 (318)
+. .+..+++.|..+|.|.+||+.
T Consensus 244 Dl----de~h~IYaGl~nG~VlvyD~R 266 (463)
T KOG1645|consen 244 DL----DERHVIYAGLQNGMVLVYDMR 266 (463)
T ss_pred cc----CCcceeEEeccCceEEEEEcc
Confidence 84 456789999999999999543
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.91 E-value=4.8e-06 Score=72.90 Aligned_cols=147 Identities=21% Similarity=0.212 Sum_probs=97.3
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEe----CCCcEE
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS----SDGSVR 160 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~----~d~~v~ 160 (318)
.+++.|..+|.|-+-.+....- .......+|..+.++++| ++.+.+.|+.|- .|..+.
T Consensus 71 cIlavG~atG~I~l~s~r~~hd------------Ss~E~tp~~ar~Ct~lAw------neLDtn~LAagldkhrnds~~~ 132 (783)
T KOG1008|consen 71 CILAVGSATGNISLLSVRHPHD------------SSAEVTPGYARPCTSLAW------NELDTNHLAAGLDKHRNDSSLK 132 (783)
T ss_pred hhhhhccccCceEEeecCCccc------------ccceeccccccccccccc------ccccHHHHHhhhhhhcccCCcc
Confidence 5889999999999998876431 122345678889999999 334455677663 467899
Q ss_pred EEECCCcce--eeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeee
Q 021036 161 IWDGYIQEL--QKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSY 238 (318)
Q Consensus 161 iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 238 (318)
|||+.++-. ....... ........+++|. .+.+++++|.....+.++| .+.... ....
T Consensus 133 Iwdi~s~ltvPke~~~fs-----------~~~l~gqns~cwl-----rd~klvlaGm~sr~~~ifd--lRqs~~-~~~s- 192 (783)
T KOG1008|consen 133 IWDINSLLTVPKESPLFS-----------SSTLDGQNSVCWL-----RDTKLVLAGMTSRSVHIFD--LRQSLD-SVSS- 192 (783)
T ss_pred ceecccccCCCccccccc-----------cccccCccccccc-----cCcchhhcccccchhhhhh--hhhhhh-hhhh-
Confidence 999987621 1110000 0112244578887 7889999999999999994 443210 1111
Q ss_pred ecccCceeEEEEcC-CCCEEEEecCCCcEEEEEe
Q 021036 239 NAHDQVVTGLAWAF-DGCCLYSCSQDNFVRSWIF 271 (318)
Q Consensus 239 ~~h~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~ 271 (318)
-.+..+..+..+| .+.++++-. ||.|-+||.
T Consensus 193 -vnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~ 224 (783)
T KOG1008|consen 193 -VNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDT 224 (783)
T ss_pred -hhhhhcccceecCCCCCceeccc-cCceeeccc
Confidence 1334566788888 667777665 999999993
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.88 E-value=6.5e-05 Score=65.90 Aligned_cols=74 Identities=20% Similarity=0.304 Sum_probs=64.2
Q ss_pred eeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEE-EEEee
Q 021036 59 AVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWIT-SISLA 137 (318)
Q Consensus 59 ~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~ 137 (318)
-+.|+|.- .++|.+..+|.|.+..++- +.+.++.-+...++ +++|
T Consensus 25 ~~ewnP~~------------------dLiA~~t~~gelli~R~n~---------------qRlwtip~p~~~v~~sL~W- 70 (665)
T KOG4640|consen 25 RIEWNPKM------------------DLIATRTEKGELLIHRLNW---------------QRLWTIPIPGENVTASLCW- 70 (665)
T ss_pred EEEEcCcc------------------chhheeccCCcEEEEEecc---------------ceeEeccCCCCccceeeee-
Confidence 47888888 9999999999999999883 45566776777777 9999
Q ss_pred eecCCCCCCCcEEEEEeCCCcEEEEECCCcceeee
Q 021036 138 VLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKS 172 (318)
Q Consensus 138 p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~ 172 (318)
.++|++|+.|-.||+|++.|+.++..+..
T Consensus 71 ------~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 71 ------RPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred ------cCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 99999999999999999999999887766
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.85 E-value=5.7e-05 Score=40.92 Aligned_cols=37 Identities=30% Similarity=0.439 Sum_probs=33.0
Q ss_pred EeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEE
Q 021036 234 KVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWI 270 (318)
Q Consensus 234 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd 270 (318)
++..+..|...|.++.|++.+.++++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4556678889999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0019 Score=61.22 Aligned_cols=115 Identities=18% Similarity=0.219 Sum_probs=72.8
Q ss_pred EEEEeeeecCCCCCCCcEEEEEe----CC-CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCC
Q 021036 132 TSISLAVLSSDSSNPQVLLVTGS----SD-GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSP 206 (318)
Q Consensus 132 ~~~~~~p~~~~~~~~~~~l~s~~----~d-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~ 206 (318)
.+|+| ..+|+++++.. .+ +.+++||-+ |.....-... .+.=.+++|- |
T Consensus 199 ~~IsW-------RgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~--------------~~l~~~LsWk-----P 251 (1265)
T KOG1920|consen 199 TSISW-------RGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPV--------------EGLQHSLSWK-----P 251 (1265)
T ss_pred ceEEE-------ccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcc--------------cccccceeec-----C
Confidence 45899 89999999843 23 799999977 4332221111 1122467787 8
Q ss_pred CceEEEEEe---CCCcEEEeeeccCCCee-eEeeeeecccCceeEEEEcCCCCEEEE---ecCCCcEEEEEecCCc
Q 021036 207 RLMLLAVGK---GSGSFDLWKCDISCNKF-DKVGSYNAHDQVVTGLAWAFDGCCLYS---CSQDNFVRSWIFHGNS 275 (318)
Q Consensus 207 ~~~~l~~~~---~dg~i~vw~~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s---~~~d~~v~iwd~~~~~ 275 (318)
.|.++++-- .|+.|.+|. ...-+. +....+......|..++|+.++..|+. ......|++|-+.+..
T Consensus 252 sgs~iA~iq~~~sd~~IvffE--rNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 252 SGSLIAAIQCKTSDSDIVFFE--RNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred CCCeEeeeeecCCCCcEEEEe--cCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 888888753 466788983 222111 011122223344899999999998887 5555569999887643
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0043 Score=42.64 Aligned_cols=104 Identities=20% Similarity=0.272 Sum_probs=66.2
Q ss_pred EEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceE
Q 021036 131 ITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLML 210 (318)
Q Consensus 131 v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~ 210 (318)
|++|+++.+.. ...+.|++|+.|..|++|+-. +.+..+.... .|..|+-. . +..
T Consensus 2 V~al~~~d~d~---dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~---------------~v~~L~~~-----~-~~~ 55 (111)
T PF14783_consen 2 VTALCLFDFDG---DGENELLVGSDDFEIRVFKGD--EIVAEITETD---------------KVTSLCSL-----G-GGR 55 (111)
T ss_pred eeEEEEEecCC---CCcceEEEecCCcEEEEEeCC--cEEEEEeccc---------------ceEEEEEc-----C-CCE
Confidence 66777754432 223679999999999999854 4444443322 67777765 3 467
Q ss_pred EEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEE-cCC--CC-EEEEecCCCcEE
Q 021036 211 LAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAW-AFD--GC-CLYSCSQDNFVR 267 (318)
Q Consensus 211 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~--~~-~l~s~~~d~~v~ 267 (318)
|+.+..+|+|-+| +.... +...+.... +.++.+ +.+ |. -|++|-.+|.|-
T Consensus 56 F~Y~l~NGTVGvY--~~~~R----lWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 56 FAYALANGTVGVY--DRSQR----LWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEEEecCCEEEEE--eCcce----eeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 9999999999999 43333 333443333 555544 333 32 688888888764
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0056 Score=51.93 Aligned_cols=149 Identities=20% Similarity=0.183 Sum_probs=91.5
Q ss_pred cEEEEecC----------CCcEEEEEccCC-ccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEE
Q 021036 85 SILAVGGR----------SGKVSLWRICVP-KCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTG 153 (318)
Q Consensus 85 ~~l~~g~~----------dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~ 153 (318)
.+|++|+. .|.|.++++... ... ...+.+.. ....++|++++- - ++. |+.+
T Consensus 43 ~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~--------~~l~~i~~-~~~~g~V~ai~~-------~-~~~-lv~~ 104 (321)
T PF03178_consen 43 EYIVVGTAFNYGEDPEPSSGRILVFEISESPENN--------FKLKLIHS-TEVKGPVTAICS-------F-NGR-LVVA 104 (321)
T ss_dssp EEEEEEEEE--TTSSS-S-EEEEEEEECSS-------------EEEEEEE-EEESS-EEEEEE-------E-TTE-EEEE
T ss_pred CEEEEEecccccccccccCcEEEEEEEEcccccc--------eEEEEEEE-EeecCcceEhhh-------h-CCE-EEEe
Confidence 67777643 288999999873 100 00122222 234788999987 3 444 4444
Q ss_pred eCCCcEEEEECCCcc-eeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCee
Q 021036 154 SSDGSVRIWDGYIQE-LQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKF 232 (318)
Q Consensus 154 ~~d~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~ 232 (318)
. .+.|.+|++...+ ....-..+ ....+.++... ++++++|+....+.++.++....+.
T Consensus 105 ~-g~~l~v~~l~~~~~l~~~~~~~-------------~~~~i~sl~~~-------~~~I~vgD~~~sv~~~~~~~~~~~l 163 (321)
T PF03178_consen 105 V-GNKLYVYDLDNSKTLLKKAFYD-------------SPFYITSLSVF-------KNYILVGDAMKSVSLLRYDEENNKL 163 (321)
T ss_dssp E-TTEEEEEEEETTSSEEEEEEE--------------BSSSEEEEEEE-------TTEEEEEESSSSEEEEEEETTTE-E
T ss_pred e-cCEEEEEEccCcccchhhheec-------------ceEEEEEEecc-------ccEEEEEEcccCEEEEEEEccCCEE
Confidence 3 4899999998777 33221111 11245555554 5699999999999998777655444
Q ss_pred eEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecC
Q 021036 233 DKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 233 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 273 (318)
..+.. ......++++.|-+++..++.+..+|.+.++....
T Consensus 164 ~~va~-d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 164 ILVAR-DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEEE-ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred EEEEe-cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 44433 22345688888886667899999999999998863
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0064 Score=48.97 Aligned_cols=149 Identities=20% Similarity=0.113 Sum_probs=84.2
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEEC
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDG 164 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~ 164 (318)
+.+++++.++.|..||..+|+ .+..+.. ...+..... ..+..++.++.++.+..+|.
T Consensus 37 ~~v~~~~~~~~l~~~d~~tG~--------------~~W~~~~-~~~~~~~~~--------~~~~~v~v~~~~~~l~~~d~ 93 (238)
T PF13360_consen 37 GRVYVASGDGNLYALDAKTGK--------------VLWRFDL-PGPISGAPV--------VDGGRVYVGTSDGSLYALDA 93 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSE--------------EEEEEEC-SSCGGSGEE--------EETTEEEEEETTSEEEEEET
T ss_pred CEEEEEcCCCEEEEEECCCCC--------------EEEEeec-cccccceee--------ecccccccccceeeeEeccc
Confidence 677777899999999998865 3333322 111111001 12345666778889999999
Q ss_pred CCcceeeee-cccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccC
Q 021036 165 YIQELQKSA-EAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQ 243 (318)
Q Consensus 165 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~ 243 (318)
.+|+..... ....... . ........ ..++.++.+..++.|..+ |.++++ .+........
T Consensus 94 ~tG~~~W~~~~~~~~~~----------~-~~~~~~~~-----~~~~~~~~~~~~g~l~~~--d~~tG~--~~w~~~~~~~ 153 (238)
T PF13360_consen 94 KTGKVLWSIYLTSSPPA----------G-VRSSSSPA-----VDGDRLYVGTSSGKLVAL--DPKTGK--LLWKYPVGEP 153 (238)
T ss_dssp TTSCEEEEEEE-SSCTC----------S-TB--SEEE-----EETTEEEEEETCSEEEEE--ETTTTE--EEEEEESSTT
T ss_pred CCcceeeeecccccccc----------c-cccccCce-----EecCEEEEEeccCcEEEE--ecCCCc--EEEEeecCCC
Confidence 999988774 3221100 0 11112222 236777888888999888 777777 4444433221
Q ss_pred c----------eeEEEEcCCCCEEEEecCCCcEEEEEecCCcee
Q 021036 244 V----------VTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLS 277 (318)
Q Consensus 244 ~----------v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 277 (318)
. +..-....++ .++.++.++.+.-+|+.+++..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~ 196 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKL 196 (238)
T ss_dssp -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEE
T ss_pred CCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEE
Confidence 1 1121222244 6666777775333498887743
|
... |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0098 Score=51.59 Aligned_cols=231 Identities=15% Similarity=0.172 Sum_probs=110.0
Q ss_pred CccceEEeeCCCceeEeecCCCCCCC------ceec--chhcccc---cccc-------ceeeeecccccCCCCcccccc
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLP------LITA--DQYASRS---AMLH-------SLAVAWSPVLRLSSKKYPVPQ 77 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~------~~~~--~~~~~~~---~~~~-------~~~~~w~p~~~~~~~~~~v~~ 77 (318)
.+..++.|-.+|.|.+|....++.-. .... ..+.+.+ ...+ .+.--+.|...+....++|++
T Consensus 12 ~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~g~vta 91 (395)
T PF08596_consen 12 ETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLDAKQGPVTA 91 (395)
T ss_dssp TTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE---S-SEEE
T ss_pred CCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhheeccCCcEeE
Confidence 34568889999999999765543221 1100 0010110 0000 001234454445556788999
Q ss_pred cCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeecc------ccccEEEEEeeeecCCCC-CCCcEE
Q 021036 78 NGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQA------HNSWITSISLAVLSSDSS-NPQVLL 150 (318)
Q Consensus 78 ~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~------h~~~v~~~~~~p~~~~~~-~~~~~l 150 (318)
++.|. =.++|.|..+|.+.|.|++.+..+- ...+.. ....|+++.|..+..... ...-.|
T Consensus 92 l~~S~-iGFvaigy~~G~l~viD~RGPavI~------------~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L 158 (395)
T PF08596_consen 92 LKNSD-IGFVAIGYESGSLVVIDLRGPAVIY------------NENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL 158 (395)
T ss_dssp EEE-B-TSEEEEEETTSEEEEEETTTTEEEE------------EEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred EecCC-CcEEEEEecCCcEEEEECCCCeEEe------------eccccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence 98874 4599999999999999998765431 112222 345788999977654321 123578
Q ss_pred EEEeCCCcEEEEECC--Ccceee-eecccccccccceeeeeecccceeEEE-Eeec---------------cCCCCceEE
Q 021036 151 VTGSSDGSVRIWDGY--IQELQK-SAEAHCVPFSLLKEVVTVNTVPISVLS-LILP---------------VQSPRLMLL 211 (318)
Q Consensus 151 ~s~~~d~~v~iwd~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~l~-~~~~---------------~~~~~~~~l 211 (318)
++|...|.+.+|.+. .+.... .+... ...+..++..+. ++-+ .....-.-+
T Consensus 159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~----------~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~ 228 (395)
T PF08596_consen 159 LVGTNSGNVLTFKILPSSNGRFSVQFAGA----------TTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGY 228 (395)
T ss_dssp EEEETTSEEEEEEEEE-GGG-EEEEEEEE----------E--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EE
T ss_pred EEEeCCCCEEEEEEecCCCCceEEEEeec----------cccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcE
Confidence 888999999999875 111111 11100 011223333333 2100 000011123
Q ss_pred EEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEc-----CCCCEEEEecCCCcEEEEEecC
Q 021036 212 AVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWA-----FDGCCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 212 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~-----~~~~~l~s~~~d~~v~iwd~~~ 273 (318)
++...+..++++ ...+.+ ..++..........+.+- ..+..|++-..+|.|++|.+..
T Consensus 229 vVvvSe~~irv~--~~~~~k--~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~ 291 (395)
T PF08596_consen 229 VVVVSESDIRVF--KPPKSK--GAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPS 291 (395)
T ss_dssp EEEE-SSEEEEE---TT-----EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT
T ss_pred EEEEcccceEEE--eCCCCc--ccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCC
Confidence 334447889998 444443 222222221222334442 2456788888999999999876
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0019 Score=54.81 Aligned_cols=208 Identities=13% Similarity=0.066 Sum_probs=127.6
Q ss_pred eEEeeC-CCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEE-ecCCCcEE
Q 021036 20 TVAASK-SKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAV-GGRSGKVS 97 (318)
Q Consensus 20 ~~t~s~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~-g~~dg~i~ 97 (318)
..|.+. |+.++++|+++-.....+..... ... ..|.-..+. + -..|++ .-.+|.+.
T Consensus 68 ~~Sv~d~Dhs~KvfDvEn~DminmiKL~~l--Pg~------a~wv~skGd-----~---------~s~IAVs~~~sg~i~ 125 (558)
T KOG0882|consen 68 FRSVEDPDHSVKVFDVENFDMINMIKLVDL--PGF------AEWVTSKGD-----K---------ISLIAVSLFKSGKIF 125 (558)
T ss_pred EeeccCcccceeEEEeeccchhhhcccccC--CCc------eEEecCCCC-----e---------eeeEEeecccCCCcE
Confidence 456566 89999999887655433332111 111 344333200 0 024444 45688899
Q ss_pred EEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCC------cceee
Q 021036 98 LWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYI------QELQK 171 (318)
Q Consensus 98 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~------~~~~~ 171 (318)
++|-..+.| +....-.-|..+|.++.+ .+.++.+++....|.|.-|.... .....
T Consensus 126 VvD~~~d~~------------q~~~fkklH~sPV~~i~y-------~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~ 186 (558)
T KOG0882|consen 126 VVDGFGDFC------------QDGYFKKLHFSPVKKIRY-------NQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNF 186 (558)
T ss_pred EECCcCCcC------------ccceecccccCceEEEEe-------eccccceeeccccceeEeecCCCcccCccccccc
Confidence 999875442 222333568999999999 88888999999999999998873 11111
Q ss_pred eecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeee--------------
Q 021036 172 SAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGS-------------- 237 (318)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~-------------- 237 (318)
.++.... +.. ....+....++.|+ |++..+.+-+.|..|+++. .++++. ++.
T Consensus 187 ~~K~eTd----Ly~-f~K~Kt~pts~Efs-----p~g~qistl~~DrkVR~F~--~KtGkl--vqeiDE~~t~~~~q~ks 252 (558)
T KOG0882|consen 187 ELKHETD----LYG-FPKAKTEPTSFEFS-----PDGAQISTLNPDRKVRGFV--FKTGKL--VQEIDEVLTDAQYQPKS 252 (558)
T ss_pred cccccch----hhc-ccccccCccceEEc-----cccCcccccCcccEEEEEE--eccchh--hhhhhccchhhhhcccc
Confidence 1111110 001 11233456789999 9999999999999999994 444331 111
Q ss_pred ------------------eecccC-ceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCC
Q 021036 238 ------------------YNAHDQ-VVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPT 283 (318)
Q Consensus 238 ------------------~~~h~~-~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 283 (318)
+..|.. .-+.+.|+..|++|+.++-=| |++.++.++.+.++....
T Consensus 253 ~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk~ 316 (558)
T KOG0882|consen 253 PYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILGKD 316 (558)
T ss_pred ccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEeccc
Confidence 112222 234677888899999887654 788888887776555443
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.013 Score=46.57 Aligned_cols=141 Identities=15% Similarity=0.010 Sum_probs=86.4
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEE
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWD 163 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd 163 (318)
..+++.|+..+.+.--|..+|+.. -+.+ -..+|.+-+. --|++++.|+..|.+.+.+
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~-------------We~i--lg~RiE~sa~--------vvgdfVV~GCy~g~lYfl~ 79 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLI-------------WEAI--LGVRIECSAI--------VVGDFVVLGCYSGGLYFLC 79 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEE-------------eehh--hCceeeeeeE--------EECCEEEEEEccCcEEEEE
Confidence 378999999999999999887532 0111 1233433332 1356799999999999999
Q ss_pred CCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccC
Q 021036 164 GYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQ 243 (318)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~ 243 (318)
..+|+..+.+...+. -.+ ..... +++.++..|+.|+..+.- |.++.. .+.+.+-..+
T Consensus 80 ~~tGs~~w~f~~~~~-------------vk~-~a~~d-----~~~glIycgshd~~~yal--D~~~~~--cVykskcgG~ 136 (354)
T KOG4649|consen 80 VKTGSQIWNFVILET-------------VKV-RAQCD-----FDGGLIYCGSHDGNFYAL--DPKTYG--CVYKSKCGGG 136 (354)
T ss_pred ecchhheeeeeehhh-------------hcc-ceEEc-----CCCceEEEecCCCcEEEe--cccccc--eEEecccCCc
Confidence 999977766543331 011 22344 789999999999999887 666654 5555443333
Q ss_pred ceeEEEEcC-CCCEEEEecCCCcEEEEEe
Q 021036 244 VVTGLAWAF-DGCCLYSCSQDNFVRSWIF 271 (318)
Q Consensus 244 ~v~~~~~~~-~~~~l~s~~~d~~v~iwd~ 271 (318)
...+-+..| ++. |..+...|.|.--..
T Consensus 137 ~f~sP~i~~g~~s-ly~a~t~G~vlavt~ 164 (354)
T KOG4649|consen 137 TFVSPVIAPGDGS-LYAAITAGAVLAVTK 164 (354)
T ss_pred eeccceecCCCce-EEEEeccceEEEEcc
Confidence 223334455 343 333333444433333
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0028 Score=57.60 Aligned_cols=147 Identities=17% Similarity=0.152 Sum_probs=91.7
Q ss_pred CccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEE
Q 021036 83 WFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIW 162 (318)
Q Consensus 83 ~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iw 162 (318)
+|.++++|+.||+|.|-.+-+++ ....+ ....++.+++++|... -...+.+++|+.-| +.++
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~--------------~~~~~-df~rpiksial~Pd~~--~~~sk~fv~GG~ag-lvL~ 143 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDD--------------EITQY-DFKRPIKSIALHPDFS--RQQSKQFVSGGMAG-LVLS 143 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCc--------------cceeE-ecCCcceeEEeccchh--hhhhhheeecCcce-EEEe
Confidence 58999999999999999988754 22222 2356899999955422 12346899999888 7776
Q ss_pred ECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeeccc
Q 021036 163 DGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHD 242 (318)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~ 242 (318)
.-+=....... +.....++|.++.|. |+++|-++.+| |++||. ..++ .+..+....
T Consensus 144 er~wlgnk~~v------------~l~~~eG~I~~i~W~-------g~lIAWand~G-v~vyd~--~~~~--~l~~i~~p~ 199 (846)
T KOG2066|consen 144 ERNWLGNKDSV------------VLSEGEGPIHSIKWR-------GNLIAWANDDG-VKVYDT--PTRQ--RLTNIPPPS 199 (846)
T ss_pred hhhhhcCccce------------eeecCccceEEEEec-------CcEEEEecCCC-cEEEec--cccc--eeeccCCCC
Confidence 43211111111 112345689999996 88999998777 799954 3333 222222111
Q ss_pred C------ceeEEEEcCCCCEEEEecCCCcEEEEEecC
Q 021036 243 Q------VVTGLAWAFDGCCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 243 ~------~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 273 (318)
. -...+.|.++.+ |+.| ...+|+|..++.
T Consensus 200 ~~~R~e~fpphl~W~~~~~-LVIG-W~d~v~i~~I~~ 234 (846)
T KOG2066|consen 200 QSVRPELFPPHLHWQDEDR-LVIG-WGDSVKICSIKK 234 (846)
T ss_pred CCCCcccCCCceEecCCCe-EEEe-cCCeEEEEEEec
Confidence 1 224577877654 4444 445788888873
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0011 Score=61.56 Aligned_cols=140 Identities=15% Similarity=0.076 Sum_probs=85.3
Q ss_pred CCcEEEEE-eCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEee
Q 021036 146 PQVLLVTG-SSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWK 224 (318)
Q Consensus 146 ~~~~l~s~-~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~ 224 (318)
+...|+.. .....|+-.|+..|+.+.....+... +|..++-.-....-+...-+.|-.+..+..||
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~-------------~v~~~~p~~K~aqlt~e~tflGls~n~lfriD 558 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDI-------------PVVDIAPDSKFAQLTNEQTFLGLSDNSLFRID 558 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCc-------------ceeEecccccccccCCCceEEEECCCceEEec
Confidence 33444443 34578999999999998887766531 23333221000011234556677788888885
Q ss_pred eccCCCeeeEeee-ee--cccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceee
Q 021036 225 CDISCNKFDKVGS-YN--AHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSC 301 (318)
Q Consensus 225 ~~~~~~~~~~~~~-~~--~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 301 (318)
.++...+ .+.. .+ ......+|++-+.+| +||.|+.+|.||+||--+.. .. ..+++-..+|
T Consensus 559 pR~~~~k--~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~-AK-------------T~lp~lG~pI 621 (794)
T PF08553_consen 559 PRLSGNK--LVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKR-AK-------------TALPGLGDPI 621 (794)
T ss_pred cCCCCCc--eeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchh-hh-------------hcCCCCCCCe
Confidence 5544322 2211 11 133456788777777 69999999999999943311 11 1233344699
Q ss_pred eEEEEcCCCcEEEE
Q 021036 302 LGMAVSPGNLVVAM 315 (318)
Q Consensus 302 ~~v~~sp~~~~l~~ 315 (318)
.+|..+.||+||+.
T Consensus 622 ~~iDvt~DGkwila 635 (794)
T PF08553_consen 622 IGIDVTADGKWILA 635 (794)
T ss_pred eEEEecCCCcEEEE
Confidence 99999999998654
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.021 Score=52.66 Aligned_cols=153 Identities=13% Similarity=0.150 Sum_probs=92.5
Q ss_pred cEEEEecCCC-----cEEEEEccCCccccccccccCCceeEE---eeec----cccccEEEEEeeeecCCCCCCCcEEEE
Q 021036 85 SILAVGGRSG-----KVSLWRICVPKCYSVEDCKVPTTAVLI---GLFQ----AHNSWITSISLAVLSSDSSNPQVLLVT 152 (318)
Q Consensus 85 ~~l~~g~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~---~~~~----~h~~~v~~~~~~p~~~~~~~~~~~l~s 152 (318)
++|++-+.|+ .++||+++.-+.. .+ +..+ +.+. ....++.+++. +.+-+.++.
T Consensus 78 ~~L~sv~Ed~~~np~llkiw~lek~~~n-----~s---P~c~~~~ri~~~~np~~~~p~s~l~V-------s~~l~~Iv~ 142 (933)
T KOG2114|consen 78 NFLFSVGEDEQGNPVLLKIWDLEKVDKN-----NS---PQCLYEHRIFTIKNPTNPSPASSLAV-------SEDLKTIVC 142 (933)
T ss_pred eEEEEEeecCCCCceEEEEecccccCCC-----CC---cceeeeeeeeccCCCCCCCcceEEEE-------EccccEEEE
Confidence 5777766555 4899999753210 00 1122 1111 13567888888 777888999
Q ss_pred EeCCCcEEEEECCC--cceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCC
Q 021036 153 GSSDGSVRIWDGYI--QELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCN 230 (318)
Q Consensus 153 ~~~d~~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~ 230 (318)
|-.+|.|.++.-+- .+-.+.. .......+|+.+.+. .++..++-...-..|.+|.+. ..
T Consensus 143 Gf~nG~V~~~~GDi~RDrgsr~~------------~~~~~~~pITgL~~~-----~d~~s~lFv~Tt~~V~~y~l~--gr 203 (933)
T KOG2114|consen 143 GFTNGLVICYKGDILRDRGSRQD------------YSHRGKEPITGLALR-----SDGKSVLFVATTEQVMLYSLS--GR 203 (933)
T ss_pred EecCcEEEEEcCcchhcccccee------------eeccCCCCceeeEEe-----cCCceeEEEEecceeEEEEec--CC
Confidence 99999999985331 1111110 111234589999998 666653333335678999554 32
Q ss_pred eeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecC
Q 021036 231 KFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 231 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 273 (318)
. .....+..|+..+.|..+++....+++++ +..+.+|+...
T Consensus 204 ~-p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~ 244 (933)
T KOG2114|consen 204 T-PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDG 244 (933)
T ss_pred C-cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCC
Confidence 2 13444667888899999988655344443 34688898765
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.72 E-value=3.7e-05 Score=70.06 Aligned_cols=128 Identities=14% Similarity=0.102 Sum_probs=90.8
Q ss_pred eeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEE
Q 021036 118 AVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVL 197 (318)
Q Consensus 118 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 197 (318)
.+..+.+..|....+|++| +.+.++|+.|+..|.|+++++.+|........|. .+|+.+
T Consensus 1091 Fr~w~~frd~~~~fTc~af-------s~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~--------------SavT~v 1149 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAF-------SGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQ--------------SAVTLV 1149 (1516)
T ss_pred cccchhhhccccceeeEEe-------ecCCceEEeeeccceEEEEEccCccccccccccc--------------cccccc
Confidence 4556677888999999999 8899999999999999999999998776665554 477777
Q ss_pred EEeeccCCCCceEEEEEeCCC--cEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCc
Q 021036 198 SLILPVQSPRLMLLAVGKGSG--SFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNS 275 (318)
Q Consensus 198 ~~~~~~~~~~~~~l~~~~~dg--~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 275 (318)
.-+ .+|..+++.+.-. -..+|+. .. ...+.+++.+ -.++.|+.....-+.|.......+||+.++.
T Consensus 1150 ePs-----~dgs~~Ltsss~S~PlsaLW~~--~s-~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~ 1217 (1516)
T KOG1832|consen 1150 EPS-----VDGSTQLTSSSSSSPLSALWDA--SS-TGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCS 1217 (1516)
T ss_pred ccc-----CCcceeeeeccccCchHHHhcc--cc-ccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCc
Confidence 766 6777766665333 4679953 32 2224444432 3568888764444445555678899999876
Q ss_pred eee
Q 021036 276 LSQ 278 (318)
Q Consensus 276 ~~~ 278 (318)
...
T Consensus 1218 ~l~ 1220 (1516)
T KOG1832|consen 1218 PLQ 1220 (1516)
T ss_pred HHH
Confidence 543
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00013 Score=39.44 Aligned_cols=38 Identities=29% Similarity=0.609 Sum_probs=32.8
Q ss_pred eEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEE
Q 021036 119 VLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWD 163 (318)
Q Consensus 119 ~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd 163 (318)
+....+..|...|.++.| .+.+.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~-------~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAF-------SPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEE-------CCCCCEEEEecCCCeEEEcC
Confidence 345667788999999999 77778999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.021 Score=49.56 Aligned_cols=193 Identities=18% Similarity=0.155 Sum_probs=98.5
Q ss_pred ccccCCCCCccEEEEecCCCcEEEEEccCCcccc-c------c-------------------cc-cc--CCceeEEeeec
Q 021036 75 VPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYS-V------E-------------------DC-KV--PTTAVLIGLFQ 125 (318)
Q Consensus 75 v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~-~------~-------------------~~-~~--~~~~~~~~~~~ 125 (318)
|+.+.++.+..-|++|...|.|.||.....+... . + +. .+ .....+...+.
T Consensus 4 v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~ 83 (395)
T PF08596_consen 4 VTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLD 83 (395)
T ss_dssp EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE-
T ss_pred EEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhee
Confidence 4444455555889999999999999886543321 0 0 00 00 12344555566
Q ss_pred cccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCC
Q 021036 126 AHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQS 205 (318)
Q Consensus 126 ~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 205 (318)
...++|++++. +.-| +++.|..+|.+.|.|+|....+......+. .........++++.|....-.
T Consensus 84 ~~~g~vtal~~-------S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~------~~~~~~~~~vt~ieF~vm~~~ 149 (395)
T PF08596_consen 84 AKQGPVTALKN-------SDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRES------FLSKSSSSYVTSIEFSVMTLG 149 (395)
T ss_dssp --S-SEEEEEE--------BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--------T-SS----EEEEEEEEEE-T
T ss_pred ccCCcEeEEec-------CCCc-EEEEEecCCcEEEEECCCCeEEeecccccc------ccccccccCeeEEEEEEEecC
Confidence 66899999998 6555 889999999999999988776655332220 001122335666776632221
Q ss_pred CC---ceEEEEEeCCCcEEEeeecc-CCCeee--EeeeeecccCceeEEE-EcCC-C-------------------CEEE
Q 021036 206 PR---LMLLAVGKGSGSFDLWKCDI-SCNKFD--KVGSYNAHDQVVTGLA-WAFD-G-------------------CCLY 258 (318)
Q Consensus 206 ~~---~~~l~~~~~dg~i~vw~~~~-~~~~~~--~~~~~~~h~~~v~~~~-~~~~-~-------------------~~l~ 258 (318)
.| .-++++|...|.+.+|.+.. ..+.+. .......+.++|..+. ++.+ | +-++
T Consensus 150 ~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~v 229 (395)
T PF08596_consen 150 GDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYV 229 (395)
T ss_dssp TSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEE
T ss_pred CCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEE
Confidence 23 36899999999999998754 333332 2222223556665554 3221 1 1233
Q ss_pred EecCCCcEEEEEecCCceeeeec
Q 021036 259 SCSQDNFVRSWIFHGNSLSQVSI 281 (318)
Q Consensus 259 s~~~d~~v~iwd~~~~~~~~~~~ 281 (318)
....+..++++...+.+.....+
T Consensus 230 VvvSe~~irv~~~~~~k~~~K~~ 252 (395)
T PF08596_consen 230 VVVSESDIRVFKPPKSKGAHKSF 252 (395)
T ss_dssp EEE-SSEEEEE-TT---EEEEE-
T ss_pred EEEcccceEEEeCCCCcccceee
Confidence 33446789999887655544333
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0024 Score=55.83 Aligned_cols=156 Identities=15% Similarity=0.044 Sum_probs=85.6
Q ss_pred ccccCCCCCccEEEEe---cCC-CcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEE
Q 021036 75 VPQNGSSNWFSILAVG---GRS-GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLL 150 (318)
Q Consensus 75 v~~~~~s~~~~~l~~g---~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l 150 (318)
+..-.++++++.++.- ... ..+.++++++++. ..+..+.++. ...+| +|+|+.|
T Consensus 195 ~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~------------~~i~~~~g~~---~~P~f-------spDG~~l 252 (425)
T COG0823 195 ILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKR------------PVILNFNGNN---GAPAF-------SPDGSKL 252 (425)
T ss_pred eeccccCcCCCceEEEEEecCCCceEEEEeccCCcc------------ceeeccCCcc---CCccC-------CCCCCEE
Confidence 3444555555554443 222 3588889988762 3333444443 34677 8888776
Q ss_pred EEE-eCCCc--EEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEE-EeCCCcEEEeeec
Q 021036 151 VTG-SSDGS--VRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAV-GKGSGSFDLWKCD 226 (318)
Q Consensus 151 ~s~-~~d~~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~-~~~dg~i~vw~~~ 226 (318)
+-+ ..||. |.+.|+.++.... +.... +.-..=.|+ |+|+.++- .+..|.-.||-.+
T Consensus 253 ~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~--------------gi~~~Ps~s-----pdG~~ivf~Sdr~G~p~I~~~~ 312 (425)
T COG0823 253 AFSSSRDGSPDIYLMDLDGKNLPR-LTNGF--------------GINTSPSWS-----PDGSKIVFTSDRGGRPQIYLYD 312 (425)
T ss_pred EEEECCCCCccEEEEcCCCCccee-cccCC--------------ccccCccCC-----CCCCEEEEEeCCCCCcceEEEC
Confidence 655 45665 5555776655322 21111 011122455 88876655 4566776777656
Q ss_pred cCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecC-CCc--EEEEEecCCc
Q 021036 227 ISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQ-DNF--VRSWIFHGNS 275 (318)
Q Consensus 227 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d~~--v~iwd~~~~~ 275 (318)
...... ..+......-..-.|+|+|++|+..+. +|. |.+.|+.++.
T Consensus 313 ~~g~~~---~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 313 LEGSQV---TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred CCCCce---eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 666543 222222222236789999998877664 344 6666665544
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0013 Score=57.54 Aligned_cols=144 Identities=15% Similarity=0.111 Sum_probs=87.2
Q ss_pred cccEEEEEeeeecCCCCCCCcEEEEEe---CC-CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeecc
Q 021036 128 NSWITSISLAVLSSDSSNPQVLLVTGS---SD-GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPV 203 (318)
Q Consensus 128 ~~~v~~~~~~p~~~~~~~~~~~l~s~~---~d-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 203 (318)
...+..-+| ++++..++-.+ .. ..+.++|+.+++......... .-..-+|+
T Consensus 192 ~~~~~~p~w-------s~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g---------------~~~~P~fs--- 246 (425)
T COG0823 192 GSLILTPAW-------SPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNG---------------NNGAPAFS--- 246 (425)
T ss_pred Ccceecccc-------CcCCCceEEEEEecCCCceEEEEeccCCccceeeccCC---------------ccCCccCC---
Confidence 445566677 66776554432 22 358889998876555443221 12234566
Q ss_pred CCCCceEEE-EEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEec-CCCc--EEEEEecCCceeee
Q 021036 204 QSPRLMLLA-VGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCS-QDNF--VRSWIFHGNSLSQV 279 (318)
Q Consensus 204 ~~~~~~~l~-~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~--v~iwd~~~~~~~~~ 279 (318)
|||+.|+ +...||...||-+|..+..... +....+.-+.-.|+|+|++|+-.+ ..|. |.+.++.++....+
T Consensus 247 --pDG~~l~f~~~rdg~~~iy~~dl~~~~~~~---Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ri 321 (425)
T COG0823 247 --PDGSKLAFSSSRDGSPDIYLMDLDGKNLPR---LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRL 321 (425)
T ss_pred --CCCCEEEEEECCCCCccEEEEcCCCCccee---cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEe
Confidence 8887655 4557888777777777765322 332233333567999999876554 4444 66666666666555
Q ss_pred ecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 280 SIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 280 ~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
....... ..-.|+|||++|+..
T Consensus 322 T~~~~~~---------------~~p~~SpdG~~i~~~ 343 (425)
T COG0823 322 TFSGGGN---------------SNPVWSPDGDKIVFE 343 (425)
T ss_pred eccCCCC---------------cCccCCCCCCEEEEE
Confidence 5444322 266889999888764
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0017 Score=59.43 Aligned_cols=68 Identities=22% Similarity=0.347 Sum_probs=58.6
Q ss_pred eeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeee
Q 021036 59 AVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAV 138 (318)
Q Consensus 59 ~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p 138 (318)
.+.|+|.. -.|+.|-.-|.+.+|..++.+ .......|..+|..+.|
T Consensus 64 SLCWHpe~------------------~vLa~gwe~g~~~v~~~~~~e--------------~htv~~th~a~i~~l~w-- 109 (1416)
T KOG3617|consen 64 SLCWHPEE------------------FVLAQGWEMGVSDVQKTNTTE--------------THTVVETHPAPIQGLDW-- 109 (1416)
T ss_pred hhccChHH------------------HHHhhccccceeEEEecCCce--------------eeeeccCCCCCceeEEe--
Confidence 38898887 789999999999999988743 33345679999999999
Q ss_pred ecCCCCCCCcEEEEEeCCCcEEEEECC
Q 021036 139 LSSDSSNPQVLLVTGSSDGSVRIWDGY 165 (318)
Q Consensus 139 ~~~~~~~~~~~l~s~~~d~~v~iwd~~ 165 (318)
+++|..++|+..-|.|.+|...
T Consensus 110 -----S~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 110 -----SHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred -----cCCCCeEEEcCCCceeEEEEee
Confidence 9999999999999999999876
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0005 Score=61.33 Aligned_cols=112 Identities=25% Similarity=0.270 Sum_probs=82.0
Q ss_pred CCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEe
Q 021036 144 SNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLW 223 (318)
Q Consensus 144 ~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw 223 (318)
...+++++.|+.-|.|.+|+-..++....-.. +....+..++++ ++..++|.|+..|.|.+|
T Consensus 42 dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~-------------~~~~~~~~~~vs-----~~e~lvAagt~~g~V~v~ 103 (726)
T KOG3621|consen 42 DATEEYLAMGSSAGSVYLYNRHTGEMRKLKNE-------------GATGITCVRSVS-----SVEYLVAAGTASGRVSVF 103 (726)
T ss_pred ecCCceEEEecccceEEEEecCchhhhccccc-------------CccceEEEEEec-----chhHhhhhhcCCceEEee
Confidence 56788999999999999999776654332211 112245566777 889999999999999999
Q ss_pred eeccCCCeee-Eeeee-ecccCceeEEEEcCCCCEEEEecCCCcEEEEEecC
Q 021036 224 KCDISCNKFD-KVGSY-NAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 224 ~~~~~~~~~~-~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 273 (318)
.++.+..... .+... +.|...|++++|++++..+++|...|+|..-.+..
T Consensus 104 ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 104 QLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred hhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 6654322111 11111 23778999999999999999999999998887765
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.011 Score=48.69 Aligned_cols=140 Identities=16% Similarity=0.095 Sum_probs=91.7
Q ss_pred CCcEEEEEeCCC-cEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe-----CCCc
Q 021036 146 PQVLLVTGSSDG-SVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK-----GSGS 219 (318)
Q Consensus 146 ~~~~l~s~~~d~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~-----~dg~ 219 (318)
.+..++.+-.-| ...+||.++++....+..... .- -.-.-.|+ +||++|++.- ..|.
T Consensus 16 ~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~g------RH------FyGHg~fs-----~dG~~LytTEnd~~~g~G~ 78 (305)
T PF07433_consen 16 RPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPG------RH------FYGHGVFS-----PDGRLLYTTENDYETGRGV 78 (305)
T ss_pred CCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCC------CE------EecCEEEc-----CCCCEEEEeccccCCCcEE
Confidence 556677777665 577899999988876654332 11 11245688 9999999864 4678
Q ss_pred EEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecC------------------CCcEEEEEecCCceeeeec
Q 021036 220 FDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQ------------------DNFVRSWIFHGNSLSQVSI 281 (318)
Q Consensus 220 i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~------------------d~~v~iwd~~~~~~~~~~~ 281 (318)
|-||| .. ..++.+.++..|.-....+.+.|||+.|+.+.. +-.+..-|..++.+.
T Consensus 79 IgVyd--~~-~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll---- 151 (305)
T PF07433_consen 79 IGVYD--AA-RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALL---- 151 (305)
T ss_pred EEEEE--Cc-CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCcee----
Confidence 99995 44 344578888888777788999999987776631 122223333333322
Q ss_pred CCCCCCccccccC--CCcceeeeEEEEcCCCcEEEEEe
Q 021036 282 PTNTPGLQSCTDL--PDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 282 ~~~~~~~~~~~~~--~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
....+ ..|...+..+++.++|..++..+
T Consensus 152 --------~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q 181 (305)
T PF07433_consen 152 --------EQVELPPDLHQLSIRHLAVDGDGTVAFAMQ 181 (305)
T ss_pred --------eeeecCccccccceeeEEecCCCcEEEEEe
Confidence 22233 23667899999999998776543
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0026 Score=59.21 Aligned_cols=152 Identities=14% Similarity=0.113 Sum_probs=95.9
Q ss_pred CccEEEEe-cCCCcEEEEEccCCccccccccccCCceeEEeeecccccc-EEEEEeeeecCCCCCCCcEEEEEeCCCcEE
Q 021036 83 WFSILAVG-GRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSW-ITSISLAVLSSDSSNPQVLLVTGSSDGSVR 160 (318)
Q Consensus 83 ~~~~l~~g-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~ 160 (318)
+.++|+.. .....|+-.|++.| +.+..+..|... |..++ |-.-........-+.|-.+..+.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~G--------------KVV~eW~~~~~~~v~~~~--p~~K~aqlt~e~tflGls~n~lf 555 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERG--------------KVVEEWKVHDDIPVVDIA--PDSKFAQLTNEQTFLGLSDNSLF 555 (794)
T ss_pred ccceEeecCCCCCceEEEecCCC--------------cEEEEeecCCCcceeEec--ccccccccCCCceEEEECCCceE
Confidence 34565554 35577888899885 466777776643 55443 32211111234567788889999
Q ss_pred EEECCCcc--eeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeee
Q 021036 161 IWDGYIQE--LQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSY 238 (318)
Q Consensus 161 iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 238 (318)
.||.|-.. ++.. ..+. .......+|++-. ...+||+|+.+|.||+|| . .++ +....+
T Consensus 556 riDpR~~~~k~v~~-~~k~----------Y~~~~~Fs~~aTt------~~G~iavgs~~G~IRLyd--~-~g~-~AKT~l 614 (794)
T PF08553_consen 556 RIDPRLSGNKLVDS-QSKQ----------YSSKNNFSCFATT------EDGYIAVGSNKGDIRLYD--R-LGK-RAKTAL 614 (794)
T ss_pred EeccCCCCCceeec-cccc----------cccCCCceEEEec------CCceEEEEeCCCcEEeec--c-cch-hhhhcC
Confidence 99998532 2211 1111 1223356777775 445799999999999995 2 222 133345
Q ss_pred ecccCceeEEEEcCCCCEEEEecCCCcEEEEEec
Q 021036 239 NAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFH 272 (318)
Q Consensus 239 ~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 272 (318)
.+-..+|.+|+.+.||+++++.+ +..+.++++.
T Consensus 615 p~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 615 PGLGDPIIGIDVTADGKWILATC-KTYLLLIDTL 647 (794)
T ss_pred CCCCCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence 67789999999999999887655 4567777763
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0097 Score=52.08 Aligned_cols=137 Identities=9% Similarity=-0.060 Sum_probs=80.9
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEE
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWD 163 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd 163 (318)
+..++.++.+|.+..+|..+++. +-... ......+.. .+..++.++.+|.+..+|
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~--------------~W~~~--~~~~~~~~~---------~~~~vy~~~~~g~l~ald 310 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQI--------------VWKRE--YGSVNDFAV---------DGGRIYLVDQNDRVYALD 310 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCE--------------EEeec--CCCccCcEE---------ECCEEEEEcCCCeEEEEE
Confidence 35667777899999999998752 11111 111111222 345677788899999999
Q ss_pred CCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccC
Q 021036 164 GYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQ 243 (318)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~ 243 (318)
..+|+.+........ .......+. +..++.++.+|.++.. |..+++ .+.+.+-...
T Consensus 311 ~~tG~~~W~~~~~~~-------------~~~~sp~v~-------~g~l~v~~~~G~l~~l--d~~tG~--~~~~~~~~~~ 366 (394)
T PRK11138 311 TRGGVELWSQSDLLH-------------RLLTAPVLY-------NGYLVVGDSEGYLHWI--NREDGR--FVAQQKVDSS 366 (394)
T ss_pred CCCCcEEEcccccCC-------------CcccCCEEE-------CCEEEEEeCCCEEEEE--ECCCCC--EEEEEEcCCC
Confidence 999887654321110 011111222 4567788889999887 666776 4444332222
Q ss_pred ceeE-EEEcCCCCEEEEecCCCcEEEEEe
Q 021036 244 VVTG-LAWAFDGCCLYSCSQDNFVRSWIF 271 (318)
Q Consensus 244 ~v~~-~~~~~~~~~l~s~~~d~~v~iwd~ 271 (318)
.+.+ ..+ .+..|+.++.||.|+.+++
T Consensus 367 ~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 367 GFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred cceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 2221 111 2457888899999888764
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00055 Score=60.34 Aligned_cols=75 Identities=19% Similarity=0.252 Sum_probs=62.4
Q ss_pred ceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCcee-EEEEcCCCCEEEEecCCCcEEEEEe
Q 021036 193 PISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVT-GLAWAFDGCCLYSCSQDNFVRSWIF 271 (318)
Q Consensus 193 ~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~~~d~~v~iwd~ 271 (318)
.+.-+.|+ |.-.++|++..+|.+-+. +.. ++.+.++.-++..++ +++|.|||+.||.|-.||+|++-|+
T Consensus 22 ~i~~~ewn-----P~~dLiA~~t~~gelli~--R~n---~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dv 91 (665)
T KOG4640|consen 22 NIKRIEWN-----PKMDLIATRTEKGELLIH--RLN---WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDV 91 (665)
T ss_pred ceEEEEEc-----CccchhheeccCCcEEEE--Eec---cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEc
Confidence 56778888 999999999999999998 333 336677766676777 9999999999999999999999999
Q ss_pred cCCcee
Q 021036 272 HGNSLS 277 (318)
Q Consensus 272 ~~~~~~ 277 (318)
.++...
T Consensus 92 e~~~~l 97 (665)
T KOG4640|consen 92 EKGGRL 97 (665)
T ss_pred cCCCce
Confidence 876543
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.02 Score=51.71 Aligned_cols=75 Identities=11% Similarity=-0.020 Sum_probs=50.9
Q ss_pred ceeEEEEeeccCCCCceEEEEEe-CCCcEEEeeeccCCC----ee----eEeeeeecccCceeEEEEcCCCCEEEEecCC
Q 021036 193 PISVLSLILPVQSPRLMLLAVGK-GSGSFDLWKCDISCN----KF----DKVGSYNAHDQVVTGLAWAFDGCCLYSCSQD 263 (318)
Q Consensus 193 ~v~~l~~~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~----~~----~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 263 (318)
....+.++ |||+++++++ .+++|.|.|+..... +. ..+.+..-..+ ....+|+++|....|--.|
T Consensus 322 sPHGV~vS-----PDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlG-PLHTaFDg~G~aytslf~d 395 (635)
T PRK02888 322 NPHGVNTS-----PDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLG-PLHTAFDGRGNAYTTLFLD 395 (635)
T ss_pred CccceEEC-----CCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCC-cceEEECCCCCEEEeEeec
Confidence 45678888 9999887776 589999996432111 00 01222222223 3467899999888888899
Q ss_pred CcEEEEEecC
Q 021036 264 NFVRSWIFHG 273 (318)
Q Consensus 264 ~~v~iwd~~~ 273 (318)
..|..|++..
T Consensus 396 sqv~kwn~~~ 405 (635)
T PRK02888 396 SQIVKWNIEA 405 (635)
T ss_pred ceeEEEehHH
Confidence 9999999875
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.017 Score=39.81 Aligned_cols=95 Identities=13% Similarity=0.161 Sum_probs=62.0
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEE
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWD 163 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd 163 (318)
.+.|++|+.|..||+|+-+. .+..+.. .+.|.++.. ... ..|+.+..+|+|.+|+
T Consensus 15 ~~eLlvGs~D~~IRvf~~~e----------------~~~Ei~e-~~~v~~L~~-------~~~-~~F~Y~l~NGTVGvY~ 69 (111)
T PF14783_consen 15 ENELLVGSDDFEIRVFKGDE----------------IVAEITE-TDKVTSLCS-------LGG-GRFAYALANGTVGVYD 69 (111)
T ss_pred cceEEEecCCcEEEEEeCCc----------------EEEEEec-ccceEEEEE-------cCC-CEEEEEecCCEEEEEe
Confidence 47899999999999998764 4444543 467788876 344 5799999999999997
Q ss_pred CCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCc-eEEEEEeCCCcEEE
Q 021036 164 GYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRL-MLLAVGKGSGSFDL 222 (318)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~-~~l~~~~~dg~i~v 222 (318)
-. +.+...+... .+.++.+. +.+ .+| ..|++|-.+|.|-+
T Consensus 70 ~~--~RlWRiKSK~---------------~~~~~~~~-D~~-gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 70 RS--QRLWRIKSKN---------------QVTSMAFY-DIN-GDGVPELIVGWSNGKVEV 110 (111)
T ss_pred Cc--ceeeeeccCC---------------CeEEEEEE-cCC-CCCceEEEEEecCCeEEe
Confidence 53 3333333221 34455443 111 222 47888888887754
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0075 Score=55.11 Aligned_cols=72 Identities=4% Similarity=0.046 Sum_probs=47.7
Q ss_pred CCceEEEEEeCCC------cEEEeeeccCC-CeeeEeeeeecccCceeEEEEcCCCCEEEEecCCC--cEEEEEecCCce
Q 021036 206 PRLMLLAVGKGSG------SFDLWKCDISC-NKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDN--FVRSWIFHGNSL 276 (318)
Q Consensus 206 ~~~~~l~~~~~dg------~i~vw~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~--~v~iwd~~~~~~ 276 (318)
-++++.+.|+.++ .+..| |..+ .+|..+..+.........+.+ +++..++|+.|+ .+..||..+++.
T Consensus 462 ~~~~IYv~GG~~~~~~~~~~ve~Y--dp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 462 HKDDIYVVCDIKDEKNVKTCIFRY--NTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred ECCEEEEEeCCCCCCccceeEEEe--cCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccccc
Confidence 3677888887542 35667 7777 678777666544433333333 578889999888 788888887776
Q ss_pred eeeec
Q 021036 277 SQVSI 281 (318)
Q Consensus 277 ~~~~~ 281 (318)
..+..
T Consensus 538 ~~~~~ 542 (557)
T PHA02713 538 NHICH 542 (557)
T ss_pred cchhh
Confidence 65443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.021 Score=50.34 Aligned_cols=131 Identities=17% Similarity=0.168 Sum_probs=68.9
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEEC
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDG 164 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~ 164 (318)
++++++ .||.-.|+..... +... .+.-....| ...+ .+++-...++|.++.-
T Consensus 45 r~v~V~-g~geY~iyt~~~~--------------r~k~-----~G~g~~~vw-------~~~n-~yAv~~~~~~I~I~kn 96 (443)
T PF04053_consen 45 RFVLVC-GDGEYEIYTALAW--------------RNKA-----FGSGLSFVW-------SSRN-RYAVLESSSTIKIYKN 96 (443)
T ss_dssp SEEEEE-ETTEEEEEETTTT--------------EEEE-----EEE-SEEEE--------TSS-EEEEE-TTS-EEEEET
T ss_pred CEEEEE-cCCEEEEEEccCC--------------cccc-----cCceeEEEE-------ecCc-cEEEEECCCeEEEEEc
Confidence 888884 5778888874331 1111 233456788 5544 4666666889999743
Q ss_pred CCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCc
Q 021036 165 YIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQV 244 (318)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~ 244 (318)
-..+....+.. +...-.+- + |.+|+..+ ++.|.+|| ..+++ .+.++.. .+
T Consensus 97 ~~~~~~k~i~~-----------------~~~~~~If-----~-G~LL~~~~-~~~i~~yD--w~~~~--~i~~i~v--~~ 146 (443)
T PF04053_consen 97 FKNEVVKSIKL-----------------PFSVEKIF-----G-GNLLGVKS-SDFICFYD--WETGK--LIRRIDV--SA 146 (443)
T ss_dssp TEE-TT----------------------SS-EEEEE-------SSSEEEEE-TTEEEEE---TTT----EEEEESS---E
T ss_pred CccccceEEcC-----------------CcccceEE-----c-CcEEEEEC-CCCEEEEE--hhHcc--eeeEEec--CC
Confidence 33332222221 11111222 3 67777776 44899995 45555 5666643 24
Q ss_pred eeEEEEcCCCCEEEEecCCCcEEEEEecCC
Q 021036 245 VTGLAWAFDGCCLYSCSQDNFVRSWIFHGN 274 (318)
Q Consensus 245 v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 274 (318)
|..+.|+++|.+++-.+.+ .+.|++....
T Consensus 147 vk~V~Ws~~g~~val~t~~-~i~il~~~~~ 175 (443)
T PF04053_consen 147 VKYVIWSDDGELVALVTKD-SIYILKYNLE 175 (443)
T ss_dssp -EEEEE-TTSSEEEEE-S--SEEEEEE-HH
T ss_pred CcEEEEECCCCEEEEEeCC-eEEEEEecch
Confidence 8899999999999888755 6777765443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.078 Score=46.57 Aligned_cols=31 Identities=6% Similarity=-0.117 Sum_probs=26.9
Q ss_pred CceeEEEEcCCCCEEEEecCCCcEEEEEecC
Q 021036 243 QVVTGLAWAFDGCCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 243 ~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 273 (318)
+++..++.||+|+++|.-..+|.+.+.+..-
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf 247 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDF 247 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEECcc
Confidence 5799999999999999999999998887543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00061 Score=62.17 Aligned_cols=104 Identities=24% Similarity=0.368 Sum_probs=74.9
Q ss_pred CCCCcEEEEEe----CCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCc
Q 021036 144 SNPQVLLVTGS----SDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGS 219 (318)
Q Consensus 144 ~~~~~~l~s~~----~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~ 219 (318)
.|...+|++++ ..|.|.||- ++|++...... ...+.+++|+ |..-.|+.|-.-|.
T Consensus 24 HPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~---------------P~hatSLCWH-----pe~~vLa~gwe~g~ 82 (1416)
T KOG3617|consen 24 HPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY---------------PVHATSLCWH-----PEEFVLAQGWEMGV 82 (1416)
T ss_pred CCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc---------------ceehhhhccC-----hHHHHHhhccccce
Confidence 44445677665 457888873 34543322211 1135679999 88899999999999
Q ss_pred EEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEec
Q 021036 220 FDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFH 272 (318)
Q Consensus 220 i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 272 (318)
+.+| ...+.+ .-.....|..+|..+.||++|..++++..-|.|.+|...
T Consensus 83 ~~v~--~~~~~e--~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 83 SDVQ--KTNTTE--THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eEEE--ecCCce--eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 9999 443433 222334699999999999999999999999999999875
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.15 Score=46.31 Aligned_cols=34 Identities=12% Similarity=-0.031 Sum_probs=26.3
Q ss_pred cCceeEEEEcCCCCEEEEe-cCCCcEEEEEecCCc
Q 021036 242 DQVVTGLAWAFDGCCLYSC-SQDNFVRSWIFHGNS 275 (318)
Q Consensus 242 ~~~v~~~~~~~~~~~l~s~-~~d~~v~iwd~~~~~ 275 (318)
......+.++|||++++++ ..+.+|.+.|+.+.+
T Consensus 320 GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k 354 (635)
T PRK02888 320 PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD 354 (635)
T ss_pred CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence 3455789999999976554 568999999998743
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.01 Score=51.75 Aligned_cols=135 Identities=12% Similarity=0.045 Sum_probs=79.5
Q ss_pred EEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeecc--CCCCceEEEEEeCCCcEEEeeec
Q 021036 149 LLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPV--QSPRLMLLAVGKGSGSFDLWKCD 226 (318)
Q Consensus 149 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--~~~~~~~l~~~~~dg~i~vw~~~ 226 (318)
+|.++..-..++-.|++.|+.+.....+. .|+-+.+.+.. ..-+...-+.|-.|..|.-||..
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~---------------di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpR 412 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFED---------------DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPR 412 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccC---------------CcceeeccCCcchhcccccccEEeecCCceEEeccc
Confidence 34445555678888999998887766544 23444444100 00112233556678888888554
Q ss_pred cCCCeeeEeeeeeccc----CceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeee
Q 021036 227 ISCNKFDKVGSYNAHD----QVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCL 302 (318)
Q Consensus 227 ~~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 302 (318)
.+... .+...++|. ....|.+-..+| +|+.||.+|.||+||.-..... . -+++-..+|.
T Consensus 413 v~~~~--kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AK-T-------------AlPgLG~~I~ 475 (644)
T KOG2395|consen 413 VQGKN--KLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAK-T-------------ALPGLGDAIK 475 (644)
T ss_pred ccCcc--eeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhh-h-------------cccccCCcee
Confidence 44432 222223332 234455544455 7999999999999997332222 1 2233345899
Q ss_pred EEEEcCCCcEEEE
Q 021036 303 GMAVSPGNLVVAM 315 (318)
Q Consensus 303 ~v~~sp~~~~l~~ 315 (318)
.|..+.||++|+.
T Consensus 476 hVdvtadGKwil~ 488 (644)
T KOG2395|consen 476 HVDVTADGKWILA 488 (644)
T ss_pred eEEeeccCcEEEE
Confidence 9999999998654
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.14 Score=43.41 Aligned_cols=152 Identities=15% Similarity=0.107 Sum_probs=83.5
Q ss_pred ccEEEEEeeeecCCCCCCCcEEEEEeC----------CCcEEEEECCCc----ceeeeecccccccccceeeeeecccce
Q 021036 129 SWITSISLAVLSSDSSNPQVLLVTGSS----------DGSVRIWDGYIQ----ELQKSAEAHCVPFSLLKEVVTVNTVPI 194 (318)
Q Consensus 129 ~~v~~~~~~p~~~~~~~~~~~l~s~~~----------d~~v~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v 194 (318)
..+.+++...+..+......+|+.|+. .|.|.++++... ..+..+. .....++|
T Consensus 24 E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~------------~~~~~g~V 91 (321)
T PF03178_consen 24 EHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIH------------STEVKGPV 91 (321)
T ss_dssp EEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEE------------EEEESS-E
T ss_pred ceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEE------------EEeecCcc
Confidence 455666654443321113567887753 288999999874 1111111 12235688
Q ss_pred eEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecC-
Q 021036 195 SVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHG- 273 (318)
Q Consensus 195 ~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~- 273 (318)
++++-- ++. |+++. ++.|.+|+++... ++.....+.. ...+.++... +.+++.|.....+.++..+.
T Consensus 92 ~ai~~~------~~~-lv~~~-g~~l~v~~l~~~~-~l~~~~~~~~-~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~ 159 (321)
T PF03178_consen 92 TAICSF------NGR-LVVAV-GNKLYVYDLDNSK-TLLKKAFYDS-PFYITSLSVF--KNYILVGDAMKSVSLLRYDEE 159 (321)
T ss_dssp EEEEEE------TTE-EEEEE-TTEEEEEEEETTS-SEEEEEEE-B-SSSEEEEEEE--TTEEEEEESSSSEEEEEEETT
T ss_pred eEhhhh------CCE-EEEee-cCEEEEEEccCcc-cchhhheecc-eEEEEEEecc--ccEEEEEEcccCEEEEEEEcc
Confidence 888875 455 44433 5899999776554 2334444332 2255555444 66999999888888886654
Q ss_pred -CceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 274 -NSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 274 -~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
..+..+.-.... ..++++.|-+|+..++.++
T Consensus 160 ~~~l~~va~d~~~-------------~~v~~~~~l~d~~~~i~~D 191 (321)
T PF03178_consen 160 NNKLILVARDYQP-------------RWVTAAEFLVDEDTIIVGD 191 (321)
T ss_dssp TE-EEEEEEESS--------------BEEEEEEEE-SSSEEEEEE
T ss_pred CCEEEEEEecCCC-------------ccEEEEEEecCCcEEEEEc
Confidence 334333322222 2677888876655655554
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.034 Score=49.03 Aligned_cols=136 Identities=17% Similarity=0.130 Sum_probs=72.6
Q ss_pred eeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeec
Q 021036 123 LFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILP 202 (318)
Q Consensus 123 ~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 202 (318)
.+.........+.+ +|+|+.++. +.||.-.|+......... .+.-...+|.
T Consensus 27 ~lg~~~~~p~~ls~-------npngr~v~V-~g~geY~iyt~~~~r~k~-------------------~G~g~~~vw~-- 77 (443)
T PF04053_consen 27 ELGSCEIYPQSLSH-------NPNGRFVLV-CGDGEYEIYTALAWRNKA-------------------FGSGLSFVWS-- 77 (443)
T ss_dssp EEEE-SS--SEEEE--------TTSSEEEE-EETTEEEEEETTTTEEEE-------------------EEE-SEEEE---
T ss_pred cCCCCCcCCeeEEE-------CCCCCEEEE-EcCCEEEEEEccCCcccc-------------------cCceeEEEEe--
Confidence 33344455788899 899998888 457888888743322211 1234467787
Q ss_pred cCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecC
Q 021036 203 VQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIP 282 (318)
Q Consensus 203 ~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 282 (318)
+. ..+|+-..++.|.++. +.... ....++. ...+..+ |. |..|+..+.+ .|.+||..++........
T Consensus 78 ---~~-n~yAv~~~~~~I~I~k-n~~~~---~~k~i~~-~~~~~~I-f~--G~LL~~~~~~-~i~~yDw~~~~~i~~i~v 144 (443)
T PF04053_consen 78 ---SR-NRYAVLESSSTIKIYK-NFKNE---VVKSIKL-PFSVEKI-FG--GNLLGVKSSD-FICFYDWETGKLIRRIDV 144 (443)
T ss_dssp ---TS-SEEEEE-TTS-EEEEE-TTEE----TT------SS-EEEE-E---SSSEEEEETT-EEEEE-TTT--EEEEESS
T ss_pred ---cC-ccEEEEECCCeEEEEE-cCccc---cceEEcC-CcccceE-Ec--CcEEEEECCC-CEEEEEhhHcceeeEEec
Confidence 64 4477777789999972 22111 1112221 1123333 22 7777776655 899999998776543322
Q ss_pred CCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 283 TNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 283 ~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
+ +|..|.|+++|.++|-.
T Consensus 145 ~----------------~vk~V~Ws~~g~~val~ 162 (443)
T PF04053_consen 145 S----------------AVKYVIWSDDGELVALV 162 (443)
T ss_dssp -----------------E-EEEEE-TTSSEEEEE
T ss_pred C----------------CCcEEEEECCCCEEEEE
Confidence 2 57899999999988754
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.17 Score=44.05 Aligned_cols=182 Identities=15% Similarity=0.157 Sum_probs=110.2
Q ss_pred ccCCCCCcc-EEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeC
Q 021036 77 QNGSSNWFS-ILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSS 155 (318)
Q Consensus 77 ~~~~s~~~~-~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~ 155 (318)
.+++++.++ ..+....++.|.+.|..+... ...... ...-..+++ +++++.+..+..
T Consensus 78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~--------------~~~~~v-G~~P~~~~~-------~~~~~~vYV~n~ 135 (381)
T COG3391 78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTV--------------LGSIPV-GLGPVGLAV-------DPDGKYVYVANA 135 (381)
T ss_pred ceeeCCCCCeEEEecCCCCeEEEEcCcccce--------------eeEeee-ccCCceEEE-------CCCCCEEEEEec
Confidence 344555545 555556678999999766432 222211 114467888 778866666655
Q ss_pred ---CCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe-CCCcEEEeeeccCCCe
Q 021036 156 ---DGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK-GSGSFDLWKCDISCNK 231 (318)
Q Consensus 156 ---d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~ 231 (318)
++++.+.|..+++......... .+ ..++++ |+|..++... .++.|.+. +.....
T Consensus 136 ~~~~~~vsvid~~t~~~~~~~~vG~--------------~P-~~~a~~-----p~g~~vyv~~~~~~~v~vi--~~~~~~ 193 (381)
T COG3391 136 GNGNNTVSVIDAATNKVTATIPVGN--------------TP-TGVAVD-----PDGNKVYVTNSDDNTVSVI--DTSGNS 193 (381)
T ss_pred ccCCceEEEEeCCCCeEEEEEecCC--------------Cc-ceEEEC-----CCCCeEEEEecCCCeEEEE--eCCCcc
Confidence 6888888888887776643322 13 678888 9998666665 78888888 444433
Q ss_pred eeEeee---eecccCceeEEEEcCCCCEEEEecCC---CcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEE
Q 021036 232 FDKVGS---YNAHDQVVTGLAWAFDGCCLYSCSQD---NFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMA 305 (318)
Q Consensus 232 ~~~~~~---~~~h~~~v~~~~~~~~~~~l~s~~~d---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 305 (318)
... .. ...-......+.++|+|.++...... +.+...|..++........... . ....+.
T Consensus 194 v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~------------~-~~~~v~ 259 (381)
T COG3391 194 VVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGS------------G-APRGVA 259 (381)
T ss_pred eec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccccc------------C-CCCcee
Confidence 111 11 11112234678899999965544333 5898988888776654222111 0 125677
Q ss_pred EcCCCcEEEEE
Q 021036 306 VSPGNLVVAMV 316 (318)
Q Consensus 306 ~sp~~~~l~~~ 316 (318)
.+|+|.++.+.
T Consensus 260 ~~p~g~~~yv~ 270 (381)
T COG3391 260 VDPAGKAAYVA 270 (381)
T ss_pred ECCCCCEEEEE
Confidence 78888776554
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.14 Score=42.26 Aligned_cols=167 Identities=16% Similarity=0.113 Sum_probs=89.8
Q ss_pred CccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEE
Q 021036 83 WFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIW 162 (318)
Q Consensus 83 ~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iw 162 (318)
.++.|+.|+.+| +.+++..... ...+.. +...|..+.. .++-+.|++-+ |+.+.++
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~-------------~~~~i~--~~~~I~ql~v-------l~~~~~llvLs-d~~l~~~ 61 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPS-------------KPTRIL--KLSSITQLSV-------LPELNLLLVLS-DGQLYVY 61 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCc-------------cceeEe--ecceEEEEEE-------ecccCEEEEEc-CCccEEE
Confidence 468999999999 8889883321 111222 2234999998 55555555554 5999999
Q ss_pred ECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCee-eEeeeeecc
Q 021036 163 DGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKF-DKVGSYNAH 241 (318)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~-~~~~~~~~h 241 (318)
++..............+..............+...+.. ....+...+.......|.+|.+......+ ....++. -
T Consensus 62 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~---~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-l 137 (275)
T PF00780_consen 62 DLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVN---GGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-L 137 (275)
T ss_pred EchhhccccccccccccccccccccccccCCeeEEeec---cccccceEEEEEECCEEEEEEEECCcccccceeEEEE-c
Confidence 99865433311100000000000000011133333300 01333334444445699999876643443 3555554 3
Q ss_pred cCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeee
Q 021036 242 DQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVS 280 (318)
Q Consensus 242 ~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 280 (318)
...+..++|. +..++.|..+ ...+.|+.++....+.
T Consensus 138 p~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 138 PDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELL 173 (275)
T ss_pred CCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEe
Confidence 4678899998 5567777644 4678888876655443
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.17 Score=44.38 Aligned_cols=193 Identities=14% Similarity=-0.005 Sum_probs=99.4
Q ss_pred ceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEE
Q 021036 19 PTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSL 98 (318)
Q Consensus 19 ~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i 98 (318)
.++.++.++.+.-+|.++++.+-........ .-+|.- .+..++.+..+|.+.-
T Consensus 122 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~-----------~ssP~v----------------~~~~v~v~~~~g~l~a 174 (394)
T PRK11138 122 KVYIGSEKGQVYALNAEDGEVAWQTKVAGEA-----------LSRPVV----------------SDGLVLVHTSNGMLQA 174 (394)
T ss_pred EEEEEcCCCEEEEEECCCCCCcccccCCCce-----------ecCCEE----------------ECCEEEEECCCCEEEE
Confidence 3566778888888999888765444332100 000100 0246677888999999
Q ss_pred EEccCCccccccccccCCceeEEeeeccccccEEE-EEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccc
Q 021036 99 WRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITS-ISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHC 177 (318)
Q Consensus 99 w~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 177 (318)
+|.++|+. +-.+......+.. ..-.|. ..+..++.++.++.+..+|..+|+.........
T Consensus 175 ld~~tG~~--------------~W~~~~~~~~~~~~~~~sP~-----v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~ 235 (394)
T PRK11138 175 LNESDGAV--------------KWTVNLDVPSLTLRGESAPA-----TAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQ 235 (394)
T ss_pred EEccCCCE--------------eeeecCCCCcccccCCCCCE-----EECCEEEEEcCCCEEEEEEccCChhhheecccc
Confidence 99998763 2222211000000 000000 012346677788999999999988776543211
Q ss_pred ccc-ccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCE
Q 021036 178 VPF-SLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCC 256 (318)
Q Consensus 178 ~~~-~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 256 (318)
... ............+ .+ .+..++.++.+|.+..+ |..+++ .+.+.. ......+. ..+..
T Consensus 236 ~~~~~~~~~~~~~~~sP----~v-------~~~~vy~~~~~g~l~al--d~~tG~--~~W~~~--~~~~~~~~--~~~~~ 296 (394)
T PRK11138 236 PTGATEIDRLVDVDTTP----VV-------VGGVVYALAYNGNLVAL--DLRSGQ--IVWKRE--YGSVNDFA--VDGGR 296 (394)
T ss_pred CCCccchhcccccCCCc----EE-------ECCEEEEEEcCCeEEEE--ECCCCC--EEEeec--CCCccCcE--EECCE
Confidence 100 0000000000001 11 23456666678887777 666665 222221 11111111 23556
Q ss_pred EEEecCCCcEEEEEecCCce
Q 021036 257 LYSCSQDNFVRSWIFHGNSL 276 (318)
Q Consensus 257 l~s~~~d~~v~iwd~~~~~~ 276 (318)
++.++.+|.+..+|..+++.
T Consensus 297 vy~~~~~g~l~ald~~tG~~ 316 (394)
T PRK11138 297 IYLVDQNDRVYALDTRGGVE 316 (394)
T ss_pred EEEEcCCCeEEEEECCCCcE
Confidence 77778889999998877654
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.022 Score=49.75 Aligned_cols=153 Identities=13% Similarity=0.098 Sum_probs=91.6
Q ss_pred ccEE-EEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEE
Q 021036 84 FSIL-AVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIW 162 (318)
Q Consensus 84 ~~~l-~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iw 162 (318)
.++| .++.....++--|++.|+ .+..++-+.+ |+-+.+.|-.-...-....=+.|-.|..|.-|
T Consensus 345 snlil~~~~~~~~l~klDIE~GK--------------IVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfri 409 (644)
T KOG2395|consen 345 SNLILMDGGEQDKLYKLDIERGK--------------IVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRI 409 (644)
T ss_pred cceEeeCCCCcCcceeeecccce--------------eeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEe
Confidence 3444 445566678888888854 5667776665 66666633211111111223446678899999
Q ss_pred ECCCcce--eeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeec
Q 021036 163 DGYIQEL--QKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNA 240 (318)
Q Consensus 163 d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 240 (318)
|.+-... +.....+. .......+|.+-. ...++++|+.+|.|++|+ ..... .-..+.+
T Consensus 410 DpRv~~~~kl~~~q~kq----------y~~k~nFsc~aTT------~sG~IvvgS~~GdIRLYd--ri~~~--AKTAlPg 469 (644)
T KOG2395|consen 410 DPRVQGKNKLAVVQSKQ----------YSTKNNFSCFATT------ESGYIVVGSLKGDIRLYD--RIGRR--AKTALPG 469 (644)
T ss_pred cccccCcceeeeeeccc----------cccccccceeeec------CCceEEEeecCCcEEeeh--hhhhh--hhhcccc
Confidence 9984322 11111111 0112234555553 445899999999999994 32221 2334677
Q ss_pred ccCceeEEEEcCCCCEEEEecCCCcEEEEEec
Q 021036 241 HDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFH 272 (318)
Q Consensus 241 h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 272 (318)
-..+|..|..+.+|++|+..+ +..+.+-++.
T Consensus 470 LG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 470 LGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred cCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 889999999999999877554 5566677664
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.082 Score=48.46 Aligned_cols=153 Identities=18% Similarity=0.156 Sum_probs=86.6
Q ss_pred ccEEEEecCCCc-----EEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCC-
Q 021036 84 FSILAVGGRSGK-----VSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDG- 157 (318)
Q Consensus 84 ~~~l~~g~~dg~-----i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~- 157 (318)
|.+.++|+.||. |-.||..+.+. ..+..+........... -+|.+.+.|+.++
T Consensus 381 g~iYavGG~dg~~~l~svE~YDp~~~~W------------~~va~m~~~r~~~gv~~---------~~g~iYi~GG~~~~ 439 (571)
T KOG4441|consen 381 GKLYAVGGFDGEKSLNSVECYDPVTNKW------------TPVAPMLTRRSGHGVAV---------LGGKLYIIGGGDGS 439 (571)
T ss_pred CEEEEEeccccccccccEEEecCCCCcc------------cccCCCCcceeeeEEEE---------ECCEEEEEcCcCCC
Confidence 478889999875 55666666542 22222222122222333 3778888888654
Q ss_pred -----cEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCc-----EEEeeecc
Q 021036 158 -----SVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGS-----FDLWKCDI 227 (318)
Q Consensus 158 -----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~-----i~vw~~~~ 227 (318)
++..||..+++-...-..... . .-..++. -++.+.+.|+.|+. |..| |.
T Consensus 440 ~~~l~sve~YDP~t~~W~~~~~M~~~------------R-~~~g~a~------~~~~iYvvGG~~~~~~~~~VE~y--dp 498 (571)
T KOG4441|consen 440 SNCLNSVECYDPETNTWTLIAPMNTR------------R-SGFGVAV------LNGKIYVVGGFDGTSALSSVERY--DP 498 (571)
T ss_pred ccccceEEEEcCCCCceeecCCcccc------------c-ccceEEE------ECCEEEEECCccCCCccceEEEE--cC
Confidence 466777766543322211111 0 1112333 36889999998873 6667 77
Q ss_pred CCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCC-----cEEEEEecCCceeeee
Q 021036 228 SCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDN-----FVRSWIFHGNSLSQVS 280 (318)
Q Consensus 228 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~-----~v~iwd~~~~~~~~~~ 280 (318)
.+.+|..+..+......+..+.+ ++...+.|+.|| +|..||..+++.....
T Consensus 499 ~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~ 554 (571)
T KOG4441|consen 499 ETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDTWTEVT 554 (571)
T ss_pred CCCceeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCCCceeeCC
Confidence 78887776555544443333332 466778888774 4667776666655433
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.31 Score=42.46 Aligned_cols=197 Identities=14% Similarity=0.073 Sum_probs=116.3
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecC---
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGR--- 92 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~--- 92 (318)
.....++...+..+.+.|..+.+....+.... ....++++|++ +.+..+..
T Consensus 85 ~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--------~P~~~~~~~~~------------------~~vYV~n~~~~ 138 (381)
T COG3391 85 GNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL--------GPVGLAVDPDG------------------KYVYVANAGNG 138 (381)
T ss_pred CCeEEEecCCCCeEEEEcCcccceeeEeeecc--------CCceEEECCCC------------------CEEEEEecccC
Confidence 33345555567888888877766655554422 12236677766 55555443
Q ss_pred CCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEe-CCCcEEEEECCCcceee
Q 021036 93 SGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS-SDGSVRIWDGYIQELQK 171 (318)
Q Consensus 93 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~-~d~~v~iwd~~~~~~~~ 171 (318)
++.+.+.|..++. .......-..+ ..+++ .++|..++... .+++|.+.|........
T Consensus 139 ~~~vsvid~~t~~--------------~~~~~~vG~~P-~~~a~-------~p~g~~vyv~~~~~~~v~vi~~~~~~v~~ 196 (381)
T COG3391 139 NNTVSVIDAATNK--------------VTATIPVGNTP-TGVAV-------DPDGNKVYVTNSDDNTVSVIDTSGNSVVR 196 (381)
T ss_pred CceEEEEeCCCCe--------------EEEEEecCCCc-ceEEE-------CCCCCeEEEEecCCCeEEEEeCCCcceec
Confidence 6788888887744 33333322234 78899 88888666555 68999999976654442
Q ss_pred eecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCC---CcEEEeeeccCCCeeeEeeeeecccCceeEE
Q 021036 172 SAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGS---GSFDLWKCDISCNKFDKVGSYNAHDQVVTGL 248 (318)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~ 248 (318)
-..... ..-......+.++ ++|..+.+.... +.+... +..++.........+.. ....+
T Consensus 197 -~~~~~~---------~~~~~~P~~i~v~-----~~g~~~yV~~~~~~~~~v~~i--d~~~~~v~~~~~~~~~~-~~~~v 258 (381)
T COG3391 197 -GSVGSL---------VGVGTGPAGIAVD-----PDGNRVYVANDGSGSNNVLKI--DTATGNVTATDLPVGSG-APRGV 258 (381)
T ss_pred -cccccc---------cccCCCCceEEEC-----CCCCEEEEEeccCCCceEEEE--eCCCceEEEeccccccC-CCCce
Confidence 110000 0011133567787 888866666544 366665 66565421110111122 44668
Q ss_pred EEcCCCCEEEEe-cCCCcEEEEEecCCceee
Q 021036 249 AWAFDGCCLYSC-SQDNFVRSWIFHGNSLSQ 278 (318)
Q Consensus 249 ~~~~~~~~l~s~-~~d~~v~iwd~~~~~~~~ 278 (318)
..+|+|.++.+. +..+.+.+.|..+.....
T Consensus 259 ~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~ 289 (381)
T COG3391 259 AVDPAGKAAYVANSQGGTVSVIDGATDRVVK 289 (381)
T ss_pred eECCCCCEEEEEecCCCeEEEEeCCCCceee
Confidence 899999987776 444889999988765544
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.29 Score=41.93 Aligned_cols=208 Identities=12% Similarity=0.076 Sum_probs=87.7
Q ss_pred eeeccCcCCCCCccceEEeeCCCceeEe--ecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCC
Q 021036 5 VDFTSNKMKDSNTHPTVAASKSKGNSIT--KIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSN 82 (318)
Q Consensus 5 ~~~~~~~~~~~~~~~~~t~s~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~ 82 (318)
+.|+.+.+.+.....+..+..|+.-.+| |+.+++..|.-.... .... ...++|..
T Consensus 36 ~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g----~~~~---g~~~s~~~---------------- 92 (386)
T PF14583_consen 36 LYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPG----DNTF---GGFLSPDD---------------- 92 (386)
T ss_dssp --TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-----B-TT---T-EE-TTS----------------
T ss_pred eeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCC----CCcc---ceEEecCC----------------
Confidence 4566666666666666666667776666 888877655443221 1111 14455655
Q ss_pred CccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeC---C---
Q 021036 83 WFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSS---D--- 156 (318)
Q Consensus 83 ~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~---d--- 156 (318)
+.++-......|+-.|+++.+ .+.+ +......+-...|.. +.++.+++-.-. |
T Consensus 93 --~~~~Yv~~~~~l~~vdL~T~e------------~~~v--y~~p~~~~g~gt~v~-----n~d~t~~~g~e~~~~d~~~ 151 (386)
T PF14583_consen 93 --RALYYVKNGRSLRRVDLDTLE------------ERVV--YEVPDDWKGYGTWVA-----NSDCTKLVGIEISREDWKP 151 (386)
T ss_dssp --SEEEEEETTTEEEEEETTT--------------EEEE--EE--TTEEEEEEEEE------TTSSEEEEEEEEGGG---
T ss_pred --CeEEEEECCCeEEEEECCcCc------------EEEE--EECCcccccccceee-----CCCccEEEEEEEeehhccC
Confidence 555444445678888888854 2223 333344444445511 233444332211 0
Q ss_pred ----------------CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe---CC
Q 021036 157 ----------------GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK---GS 217 (318)
Q Consensus 157 ----------------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~---~d 217 (318)
..|.--|+.+|+.... -.....+..+.++ |.+..+|+-|. .+
T Consensus 152 l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v---------------~~~~~wlgH~~fs----P~dp~li~fCHEGpw~ 212 (386)
T PF14583_consen 152 LTKWKGFREFYEARPHCRIFTIDLKTGERKVV---------------FEDTDWLGHVQFS----PTDPTLIMFCHEGPWD 212 (386)
T ss_dssp --SHHHHHHHHHC---EEEEEEETTT--EEEE---------------EEESS-EEEEEEE----TTEEEEEEEEE-S-TT
T ss_pred ccccHHHHHHHhhCCCceEEEEECCCCceeEE---------------EecCccccCcccC----CCCCCEEEEeccCCcc
Confidence 1122223333332221 2234467888999 34556666654 23
Q ss_pred Cc-EEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEE-----ecCCCcEEEEEecCCce
Q 021036 218 GS-FDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYS-----CSQDNFVRSWIFHGNSL 276 (318)
Q Consensus 218 g~-i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-----~~~d~~v~iwd~~~~~~ 276 (318)
.. -+||-++.......++..-. -...+..=-|.|||..|.- ++.+..|.-+|+.++..
T Consensus 213 ~Vd~RiW~i~~dg~~~~~v~~~~-~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~ 276 (386)
T PF14583_consen 213 LVDQRIWTINTDGSNVKKVHRRM-EGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER 276 (386)
T ss_dssp TSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E
T ss_pred eeceEEEEEEcCCCcceeeecCC-CCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc
Confidence 32 47887776665544443321 1223333458888885543 22344566666666543
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.23 Score=45.42 Aligned_cols=71 Identities=11% Similarity=0.038 Sum_probs=41.9
Q ss_pred CceEEEEEeCCC--------cEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCC-----CcEEEEEecC
Q 021036 207 RLMLLAVGKGSG--------SFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQD-----NFVRSWIFHG 273 (318)
Q Consensus 207 ~~~~l~~~~~dg--------~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-----~~v~iwd~~~ 273 (318)
++.+++.|+.++ .+.+| |..+.+|..+..+.........+.+ +++.++.|+.+ ..+.+||..+
T Consensus 437 ~~~iyv~GG~~~~~~~~~~~~v~~y--d~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 437 DGKIYVIGGISYIDNIKVYNIVESY--NPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred CCEEEEECCccCCCCCcccceEEEe--cCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCC
Confidence 567777776432 26666 7777777665543322222122222 56777777654 4788899888
Q ss_pred Cceeeeec
Q 021036 274 NSLSQVSI 281 (318)
Q Consensus 274 ~~~~~~~~ 281 (318)
+....+..
T Consensus 513 ~~W~~~~~ 520 (534)
T PHA03098 513 NTWTLFCK 520 (534)
T ss_pred CEEEecCC
Confidence 77665543
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.006 Score=35.00 Aligned_cols=32 Identities=13% Similarity=0.096 Sum_probs=28.8
Q ss_pred cCceeEEEEcCCCCEEEEecCCCcEEEEEecC
Q 021036 242 DQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 242 ~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 273 (318)
...|..++|+|...+||.++.+|.|.++.+..
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence 45689999999999999999999999998844
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.26 Score=40.21 Aligned_cols=201 Identities=13% Similarity=0.060 Sum_probs=117.3
Q ss_pred ccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeee--ccccccEEEEEeeeecCCCCCCCcEEEE
Q 021036 75 VPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLF--QAHNSWITSISLAVLSSDSSNPQVLLVT 152 (318)
Q Consensus 75 v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~p~~~~~~~~~~~l~s 152 (318)
+.+++++|+.+.|++......-.++=..+|+ .++++ .+. ..--.+.| ..++++.++
T Consensus 88 vS~LTynp~~rtLFav~n~p~~iVElt~~Gd--------------lirtiPL~g~-~DpE~Iey-------ig~n~fvi~ 145 (316)
T COG3204 88 VSSLTYNPDTRTLFAVTNKPAAIVELTKEGD--------------LIRTIPLTGF-SDPETIEY-------IGGNQFVIV 145 (316)
T ss_pred ccceeeCCCcceEEEecCCCceEEEEecCCc--------------eEEEeccccc-CChhHeEE-------ecCCEEEEE
Confidence 4444444444888887777776666655544 44443 332 22356888 777777777
Q ss_pred EeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCee
Q 021036 153 GSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKF 232 (318)
Q Consensus 153 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~ 232 (318)
-=.++.+.++.+........+.....+. ... .........++|+ |....|+.+-.-.-+.+|.++......
T Consensus 146 dER~~~l~~~~vd~~t~~~~~~~~~i~L---~~~-~k~N~GfEGlA~d-----~~~~~l~~aKEr~P~~I~~~~~~~~~l 216 (316)
T COG3204 146 DERDRALYLFTVDADTTVISAKVQKIPL---GTT-NKKNKGFEGLAWD-----PVDHRLFVAKERNPIGIFEVTQSPSSL 216 (316)
T ss_pred ehhcceEEEEEEcCCccEEeccceEEec---ccc-CCCCcCceeeecC-----CCCceEEEEEccCCcEEEEEecCCccc
Confidence 7788999998887664443332211100 000 1114467789999 888888888877788888654222111
Q ss_pred eEeeeeecc-------cCceeEEEEcCC-CCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEE
Q 021036 233 DKVGSYNAH-------DQVVTGLAWAFD-GCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGM 304 (318)
Q Consensus 233 ~~~~~~~~h-------~~~v~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v 304 (318)
.+.....+ -..|.++.|++. +.+|+-+.+++.+.-.|..++....+....... .+...-..-.++
T Consensus 217 -~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~------gL~~dipqaEGi 289 (316)
T COG3204 217 -SVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNH------GLSSDIPQAEGI 289 (316)
T ss_pred -ccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCC------CCcccCCCccee
Confidence 11111112 235678889874 667788888888888888776554444433221 111112244578
Q ss_pred EEcCCCcEE
Q 021036 305 AVSPGNLVV 313 (318)
Q Consensus 305 ~~sp~~~~l 313 (318)
+..++|.+-
T Consensus 290 amDd~g~lY 298 (316)
T COG3204 290 AMDDDGNLY 298 (316)
T ss_pred EECCCCCEE
Confidence 888877643
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.27 Score=45.20 Aligned_cols=112 Identities=6% Similarity=0.097 Sum_probs=60.2
Q ss_pred CCcEEEEEeCCC-----cEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCC--
Q 021036 146 PQVLLVTGSSDG-----SVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSG-- 218 (318)
Q Consensus 146 ~~~~l~s~~~d~-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg-- 218 (318)
++.+.+.|+.++ ++..||..+.+-...-..... .... +++. -++.+.+.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~------------r~~~-~~~~------~~g~IYviGG~~~~~ 411 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIA------------LSSY-GMCV------LDQYIYIIGGRTEHI 411 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcc------------cccc-cEEE------ECCEEEEEeCCCccc
Confidence 667778888654 477888776542221111100 0011 1222 3678888887553
Q ss_pred ---------------------cEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCC------CcEEEEEe
Q 021036 219 ---------------------SFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQD------NFVRSWIF 271 (318)
Q Consensus 219 ---------------------~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d------~~v~iwd~ 271 (318)
.+..| |..+.+|..+..+.........+ .-+++..+.|+.+ ..+..||.
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~ve~Y--DP~td~W~~v~~m~~~r~~~~~~--~~~~~IYv~GG~~~~~~~~~~ve~Ydp 487 (557)
T PHA02713 412 DYTSVHHMNSIDMEEDTHSSNKVIRY--DTVNNIWETLPNFWTGTIRPGVV--SHKDDIYVVCDIKDEKNVKTCIFRYNT 487 (557)
T ss_pred ccccccccccccccccccccceEEEE--CCCCCeEeecCCCCcccccCcEE--EECCEEEEEeCCCCCCccceeEEEecC
Confidence 35666 77788887666553222221122 2246666677654 24678888
Q ss_pred cC-Cceeeee
Q 021036 272 HG-NSLSQVS 280 (318)
Q Consensus 272 ~~-~~~~~~~ 280 (318)
.+ +....+.
T Consensus 488 ~~~~~W~~~~ 497 (557)
T PHA02713 488 NTYNGWELIT 497 (557)
T ss_pred CCCCCeeEcc
Confidence 87 5665443
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.013 Score=33.58 Aligned_cols=34 Identities=21% Similarity=0.265 Sum_probs=29.6
Q ss_pred cccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcce
Q 021036 128 NSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQEL 169 (318)
Q Consensus 128 ~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 169 (318)
...|.+++| +|..++|+.++.+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w-------~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSW-------CPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEE-------CCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 457999999 899999999999999999998 4443
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.19 Score=46.09 Aligned_cols=156 Identities=18% Similarity=0.137 Sum_probs=89.9
Q ss_pred CCCccEEEEecCCC------cEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEe
Q 021036 81 SNWFSILAVGGRSG------KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS 154 (318)
Q Consensus 81 s~~~~~l~~g~~dg------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~ 154 (318)
+..+.+++.|+.++ .+..+|..+++. .....+..... -.+++. .++...++|+
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w------------~~~a~m~~~r~-~~~~~~--------~~~~lYv~GG 340 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEW------------SSLAPMPSPRC-RVGVAV--------LNGKLYVVGG 340 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcE------------eecCCCCcccc-cccEEE--------ECCEEEEEcc
Confidence 44467888888874 577788877642 22233332222 233443 3567889999
Q ss_pred CC------CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCc-----EEEe
Q 021036 155 SD------GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGS-----FDLW 223 (318)
Q Consensus 155 ~d------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~-----i~vw 223 (318)
.| .++..||...++-......... ... ..++. -+|.+.++|+.||. |..|
T Consensus 341 ~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~------------R~~-~~v~~------l~g~iYavGG~dg~~~l~svE~Y 401 (571)
T KOG4441|consen 341 YDSGSDRLSSVERYDPRTNQWTPVAPMNTK------------RSD-FGVAV------LDGKLYAVGGFDGEKSLNSVECY 401 (571)
T ss_pred ccCCCcccceEEEecCCCCceeccCCccCc------------ccc-ceeEE------ECCEEEEEeccccccccccEEEe
Confidence 88 3677888877663321111110 001 12222 47899999998876 6666
Q ss_pred eeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCC------CcEEEEEecCCceeeee
Q 021036 224 KCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQD------NFVRSWIFHGNSLSQVS 280 (318)
Q Consensus 224 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d------~~v~iwd~~~~~~~~~~ 280 (318)
|..+.+|..+..+.......-.+ .-+|...+.||.+ .++..||..++....+.
T Consensus 402 --Dp~~~~W~~va~m~~~r~~~gv~--~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~ 460 (571)
T KOG4441|consen 402 --DPVTNKWTPVAPMLTRRSGHGVA--VLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIA 460 (571)
T ss_pred --cCCCCcccccCCCCcceeeeEEE--EECCEEEEEcCcCCCccccceEEEEcCCCCceeecC
Confidence 67777776665544322222222 2357777888755 45778888877665443
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.012 Score=55.49 Aligned_cols=75 Identities=21% Similarity=0.285 Sum_probs=57.7
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEE
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWD 163 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd 163 (318)
+..++.|+.-|.+...|....-+ +...-..-.++|++++| +.+|..++.|-.+|.|.+||
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~-------------~~~~ne~v~~~Vtsvaf-------n~dg~~l~~G~~~G~V~v~D 158 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLG-------------PLHQNERVQGPVTSVAF-------NQDGSLLLAGLGDGHVTVWD 158 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccc-------------hhhcCCccCCcceeeEe-------cCCCceeccccCCCcEEEEE
Confidence 45788899999999888875311 11111223579999999 99999999999999999999
Q ss_pred CCCcceeeeeccccc
Q 021036 164 GYIQELQKSAEAHCV 178 (318)
Q Consensus 164 ~~~~~~~~~~~~~~~ 178 (318)
+..++..+.+..+..
T Consensus 159 ~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 159 MHRAKILKVITEHGA 173 (1206)
T ss_pred ccCCcceeeeeecCC
Confidence 999988887766554
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.023 Score=48.95 Aligned_cols=106 Identities=14% Similarity=0.176 Sum_probs=62.7
Q ss_pred CCceEEEEEe---------CCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCce
Q 021036 206 PRLMLLAVGK---------GSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSL 276 (318)
Q Consensus 206 ~~~~~l~~~~---------~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 276 (318)
||+++++... ..+.+.+| |+.+++..++.. ....+....|+|+|+.++... ++.|.+++..++..
T Consensus 2 ~d~~~~l~~~~~~~~~r~s~~~~y~i~--d~~~~~~~~l~~---~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 2 PDGKFVLFATNYTKQWRHSFKGDYYIY--DIETGEITPLTP---PPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp TTSSEEEEEEEEEEESSSEEEEEEEEE--ETTTTEEEESS----EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred CCCCeEEEEECcEEeeeeccceeEEEE--ecCCCceEECcC---CccccccceeecCCCeeEEEe-cCceEEEECCCCCe
Confidence 6666666632 24456777 666765444333 256788899999999888775 67899999887766
Q ss_pred eeeecCCCCCCccccccCC---CcceeeeEEEEcCCCcEEEEEe
Q 021036 277 SQVSIPTNTPGLQSCTDLP---DAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~---~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
.++.........-|..+.. +-.+.-..+-|||||++||..+
T Consensus 76 ~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 76 TQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR 119 (353)
T ss_dssp EESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred EEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence 6555444111111222100 0012336799999999999865
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.021 Score=54.00 Aligned_cols=102 Identities=22% Similarity=0.275 Sum_probs=70.0
Q ss_pred CCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeee
Q 021036 146 PQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKC 225 (318)
Q Consensus 146 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~ 225 (318)
.+-.++.|+..|.+...|+...-.. +... ..-.++|++++|+ .+|..++.|-.+|.|.+|
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~--~~~n-----------e~v~~~Vtsvafn-----~dg~~l~~G~~~G~V~v~-- 157 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGP--LHQN-----------ERVQGPVTSVAFN-----QDGSLLLAGLGDGHVTVW-- 157 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccch--hhcC-----------CccCCcceeeEec-----CCCceeccccCCCcEEEE--
Confidence 3446888998999999988754111 1100 1124589999999 899999999999999999
Q ss_pred ccCCCeeeEeeeeecccCceeE---EEEcCCCCEEEEecCCCcEEEEEe
Q 021036 226 DISCNKFDKVGSYNAHDQVVTG---LAWAFDGCCLYSCSQDNFVRSWIF 271 (318)
Q Consensus 226 ~~~~~~~~~~~~~~~h~~~v~~---~~~~~~~~~l~s~~~d~~v~iwd~ 271 (318)
|+..++ .++.+..|..+.++ +.+..++..++++...|. +|.+
T Consensus 158 D~~~~k--~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 158 DMHRAK--ILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EccCCc--ceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 454544 44555555555444 445556667888877776 5665
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.018 Score=44.75 Aligned_cols=107 Identities=20% Similarity=0.225 Sum_probs=63.1
Q ss_pred CCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeee
Q 021036 146 PQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKC 225 (318)
Q Consensus 146 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~ 225 (318)
.+..++.|+.+|.|.+|..........+... ....+-++.-. -.++.+..+++.+|.|+.|+
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s-------------~~e~i~~~Ip~----~~~~~~~c~~~~dg~ir~~n- 130 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCS-------------GEESIDLGIPN----GRDSSLGCVGAQDGRIRACN- 130 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhc-------------ccccceecccc----ccccceeEEeccCCceeeec-
Confidence 3457899999999999987622111110000 00122111111 03456889999999999994
Q ss_pred ccCCCeeeEeeeeeccc-CceeEEEEcCCCCEEEEe--cCCCcEEEEEecC
Q 021036 226 DISCNKFDKVGSYNAHD-QVVTGLAWAFDGCCLYSC--SQDNFVRSWIFHG 273 (318)
Q Consensus 226 ~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~--~~d~~v~iwd~~~ 273 (318)
..-.+ .+.....|+ .++..+..+..+++++.+ |.|..++.|++..
T Consensus 131 -~~p~k--~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 131 -IKPNK--VLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred -cccCc--eeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 43333 333444565 555555556666677777 7778888887753
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.45 Score=38.55 Aligned_cols=184 Identities=10% Similarity=-0.005 Sum_probs=91.1
Q ss_pred cEEEEecCCC--cEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEE
Q 021036 85 SILAVGGRSG--KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIW 162 (318)
Q Consensus 85 ~~l~~g~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iw 162 (318)
.++-+.+.-| .|+.+|+.+++......-+...-++= +..+.+.+..+.| .++...+|
T Consensus 57 ~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEG---it~~~d~l~qLTW------------------k~~~~f~y 115 (264)
T PF05096_consen 57 TLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEG---ITILGDKLYQLTW------------------KEGTGFVY 115 (264)
T ss_dssp EEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEE---EEEETTEEEEEES------------------SSSEEEEE
T ss_pred EEEEeCCCCCcEEEEEEECCCCcEEEEEECCcccccee---EEEECCEEEEEEe------------------cCCeEEEE
Confidence 6777777666 68899999976432110000000000 1113445566666 56889999
Q ss_pred ECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeec--
Q 021036 163 DGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNA-- 240 (318)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~-- 240 (318)
|..+.+.+..+.... .=..++. +++.|+..+....++.+ |..+.+ ...++..
T Consensus 116 d~~tl~~~~~~~y~~---------------EGWGLt~-------dg~~Li~SDGS~~L~~~--dP~~f~--~~~~i~V~~ 169 (264)
T PF05096_consen 116 DPNTLKKIGTFPYPG---------------EGWGLTS-------DGKRLIMSDGSSRLYFL--DPETFK--EVRTIQVTD 169 (264)
T ss_dssp ETTTTEEEEEEE-SS---------------S--EEEE-------CSSCEEEE-SSSEEEEE---TTT-S--EEEEEE-EE
T ss_pred ccccceEEEEEecCC---------------cceEEEc-------CCCEEEEECCccceEEE--CCcccc--eEEEEEEEE
Confidence 999887777665432 2234443 46667777666677776 555433 2222221
Q ss_pred ccC---ceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCC-CCCccccccCCCcceeeeEEEEcC-CCcEEEE
Q 021036 241 HDQ---VVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTN-TPGLQSCTDLPDAFVSCLGMAVSP-GNLVVAM 315 (318)
Q Consensus 241 h~~---~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~~ 315 (318)
... .+..+.|- +|...|=.=....|...|..++.+....--.. .+......+...-....+++|+.| .+++++|
T Consensus 170 ~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vT 248 (264)
T PF05096_consen 170 NGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVT 248 (264)
T ss_dssp TTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEE
T ss_pred CCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEE
Confidence 222 33445553 45545544455566677777766643221000 000000000001134789999988 5567777
Q ss_pred E
Q 021036 316 V 316 (318)
Q Consensus 316 ~ 316 (318)
|
T Consensus 249 G 249 (264)
T PF05096_consen 249 G 249 (264)
T ss_dssp E
T ss_pred e
Confidence 6
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.5 Score=39.63 Aligned_cols=147 Identities=16% Similarity=0.077 Sum_probs=78.0
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEE
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWD 163 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd 163 (318)
+.++.+--..+.|.-|+..+++. +.+.. .+.+.++.. -..+..|+++. ..+.+++
T Consensus 37 ~~L~w~DI~~~~i~r~~~~~g~~---------------~~~~~-p~~~~~~~~-------~d~~g~Lv~~~--~g~~~~~ 91 (307)
T COG3386 37 GALLWVDILGGRIHRLDPETGKK---------------RVFPS-PGGFSSGAL-------IDAGGRLIACE--HGVRLLD 91 (307)
T ss_pred CEEEEEeCCCCeEEEecCCcCce---------------EEEEC-CCCccccee-------ecCCCeEEEEc--cccEEEe
Confidence 35777777888899999876541 22222 233344444 33344555543 3456666
Q ss_pred CCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeC---------CCcEEEeeeccCCCeeeE
Q 021036 164 GYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKG---------SGSFDLWKCDISCNKFDK 234 (318)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~---------dg~i~vw~~~~~~~~~~~ 234 (318)
..++.....+..... .......+.+.+. |+|.+.++... ...-.+|-++.....
T Consensus 92 ~~~~~~~t~~~~~~~---------~~~~~r~ND~~v~-----pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~--- 154 (307)
T COG3386 92 PDTGGKITLLAEPED---------GLPLNRPNDGVVD-----PDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGV--- 154 (307)
T ss_pred ccCCceeEEeccccC---------CCCcCCCCceeEc-----CCCCEEEeCCCccccCccccCCcceEEEEcCCCCE---
Confidence 655544222211110 0011244566777 77776665544 111245544543322
Q ss_pred eeeeecccCceeEEEEcCCCCEEEEec-CCCcEEEEEec
Q 021036 235 VGSYNAHDQVVTGLAWAFDGCCLYSCS-QDNFVRSWIFH 272 (318)
Q Consensus 235 ~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~v~iwd~~ 272 (318)
+..+..+-..-+.++||||++.|..+. ..+.|.-|++.
T Consensus 155 ~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d 193 (307)
T COG3386 155 VRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLD 193 (307)
T ss_pred EEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecC
Confidence 222333344457899999998666554 45788888775
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.64 Score=38.84 Aligned_cols=155 Identities=17% Similarity=0.116 Sum_probs=75.7
Q ss_pred ccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEE
Q 021036 73 YPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVT 152 (318)
Q Consensus 73 ~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s 152 (318)
..+..+..+++|++++++..-....-|+-.... .++.. +.-...|..|.| .+++.+.+.
T Consensus 145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~------------w~~~~--r~~~~riq~~gf-------~~~~~lw~~ 203 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT------------WQPHN--RNSSRRIQSMGF-------SPDGNLWML 203 (302)
T ss_dssp --EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-------------EEEE----SSS-EEEEEE--------TTS-EEEE
T ss_pred ceeEeEEECCCCcEEEEECcccEEEEecCCCcc------------ceEEc--cCccceehhcee-------cCCCCEEEE
Confidence 456777778889999888665555667754321 11111 223578999999 788766665
Q ss_pred EeCCCcEEEEEC-CCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCC-
Q 021036 153 GSSDGSVRIWDG-YIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCN- 230 (318)
Q Consensus 153 ~~~d~~v~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~- 230 (318)
+ ..|.|++=+. ...+.... ...+. ......+..+++. +++...++|+ .|.+.+ ....+
T Consensus 204 ~-~Gg~~~~s~~~~~~~~w~~---~~~~~-------~~~~~~~ld~a~~-----~~~~~wa~gg-~G~l~~---S~DgGk 263 (302)
T PF14870_consen 204 A-RGGQIQFSDDPDDGETWSE---PIIPI-------KTNGYGILDLAYR-----PPNEIWAVGG-SGTLLV---STDGGK 263 (302)
T ss_dssp E-TTTEEEEEE-TTEEEEE------B-TT-------SS--S-EEEEEES-----SSS-EEEEES-TT-EEE---ESSTTS
T ss_pred e-CCcEEEEccCCCCcccccc---ccCCc-------ccCceeeEEEEec-----CCCCEEEEeC-CccEEE---eCCCCc
Confidence 4 8888888772 22222111 00000 0122356788887 6777777665 665555 33333
Q ss_pred eeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEE
Q 021036 231 KFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSW 269 (318)
Q Consensus 231 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iw 269 (318)
.++.......-....+.+.|.+..+-++ -+.+|.|.-|
T Consensus 264 tW~~~~~~~~~~~n~~~i~f~~~~~gf~-lG~~G~ll~~ 301 (302)
T PF14870_consen 264 TWQKDRVGENVPSNLYRIVFVNPDKGFV-LGQDGVLLRY 301 (302)
T ss_dssp S-EE-GGGTTSSS---EEEEEETTEEEE-E-STTEEEEE
T ss_pred cceECccccCCCCceEEEEEcCCCceEE-ECCCcEEEEe
Confidence 3433332223345678899976654444 4568877655
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.59 Score=38.22 Aligned_cols=125 Identities=12% Similarity=0.143 Sum_probs=86.7
Q ss_pred eccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeecc
Q 021036 124 FQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPV 203 (318)
Q Consensus 124 ~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 203 (318)
+.+-...|.++.| +++.+.|++......-.++=...|+.+.++..... +....+.+.
T Consensus 81 i~g~~~nvS~LTy-------np~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~-------------~DpE~Ieyi--- 137 (316)
T COG3204 81 ILGETANVSSLTY-------NPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF-------------SDPETIEYI--- 137 (316)
T ss_pred cccccccccceee-------CCCcceEEEecCCCceEEEEecCCceEEEeccccc-------------CChhHeEEe---
Confidence 3455566999999 88888888888877777776677888877654321 123456676
Q ss_pred CCCCceEEEEEeCCCcEEEeeeccCCCeeeE------eeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecC
Q 021036 204 QSPRLMLLAVGKGSGSFDLWKCDISCNKFDK------VGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 204 ~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~------~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 273 (318)
.++.+.++--.++.++++.++..+..... +......+.....++|+|..+.|..+-+-.-+.||.+..
T Consensus 138 --g~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~ 211 (316)
T COG3204 138 --GGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQ 211 (316)
T ss_pred --cCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEec
Confidence 66777777778888988877665433211 111111245678899999988888888888888887763
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.8 Score=42.26 Aligned_cols=163 Identities=15% Similarity=0.068 Sum_probs=83.9
Q ss_pred cccccCCCCCccEEEEec------CCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCC
Q 021036 74 PVPQNGSSNWFSILAVGG------RSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQ 147 (318)
Q Consensus 74 ~v~~~~~s~~~~~l~~g~------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~ 147 (318)
.+...+++++|+.++... .|..-.||-...+. .......+. ..+.-.| +++|
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-------------~~~~lt~g~--~~t~PsW-------spDG 408 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-------------VAVQVLEGH--SLTRPSW-------SLDA 408 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-------------cceeeecCC--CCCCceE-------CCCC
Confidence 466777888888876654 24444555443221 111112232 3677889 8888
Q ss_pred cEEEEEeCC-CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeee-
Q 021036 148 VLLVTGSSD-GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKC- 225 (318)
Q Consensus 148 ~~l~s~~~d-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~- 225 (318)
+.|.+.... ..+++.+-.....+..+...... ........|..+.|+ |||..++... +|.|++=-+
T Consensus 409 ~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge------~~~~~~g~Issl~wS-----pDG~RiA~i~-~g~v~Va~Vv 476 (591)
T PRK13616 409 DAVWVVVDGNTVVRVIRDPATGQLARTPVDASA------VASRVPGPISELQLS-----RDGVRAAMII-GGKVYLAVVE 476 (591)
T ss_pred CceEEEecCcceEEEeccCCCceEEEEeccCch------hhhccCCCcCeEEEC-----CCCCEEEEEE-CCEEEEEEEE
Confidence 877777543 22333322211112111111100 000123479999999 9999888766 576666211
Q ss_pred ccCCCeeeE--eeeeec-ccCceeEEEEcCCCCEEEEecCCCcEEEEEe
Q 021036 226 DISCNKFDK--VGSYNA-HDQVVTGLAWAFDGCCLYSCSQDNFVRSWIF 271 (318)
Q Consensus 226 ~~~~~~~~~--~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~ 271 (318)
....+.... ...+.. -...+..+.|..++.++ .+..++...+|.+
T Consensus 477 r~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 477 QTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred eCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEE
Confidence 223333111 111222 23346789999999854 5555554445544
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.22 Score=45.65 Aligned_cols=112 Identities=9% Similarity=0.114 Sum_probs=69.1
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEE
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWD 163 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd 163 (318)
++..++-+....+.|||...+. .+....+ ...+.|.++.| .+.++++.+++.+....|.++.
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~~------------lE~~~~f-~~~~~I~dLDW-----tst~d~qsiLaVGf~~~v~l~~ 102 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSGV------------LEYEESF-SEDDPIRDLDW-----TSTPDGQSILAVGFPHHVLLYT 102 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCcE------------EEEeeee-cCCCceeecee-----eecCCCCEEEEEEcCcEEEEEE
Confidence 3554555555578999998754 2233334 44688999999 3467888899999999999996
Q ss_pred CCCcceeeeecccccccccceee--eeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEee
Q 021036 164 GYIQELQKSAEAHCVPFSLLKEV--VTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWK 224 (318)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~ 224 (318)
....... .....+..++.+ .....++|.+..|. ++|.+++.+ .+.+.+++
T Consensus 103 Q~R~dy~----~~~p~w~~i~~i~i~~~T~h~Igds~Wl-----~~G~LvV~s--GNqlfv~d 154 (631)
T PF12234_consen 103 QLRYDYT----NKGPSWAPIRKIDISSHTPHPIGDSIWL-----KDGTLVVGS--GNQLFVFD 154 (631)
T ss_pred ccchhhh----cCCcccceeEEEEeecCCCCCccceeEe-----cCCeEEEEe--CCEEEEEC
Confidence 5321111 111112222222 12233688999998 777666544 45677774
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.81 Score=41.93 Aligned_cols=70 Identities=17% Similarity=0.182 Sum_probs=39.3
Q ss_pred CceEEEEEeCC------CcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCC--------CcEEEEEec
Q 021036 207 RLMLLAVGKGS------GSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQD--------NFVRSWIFH 272 (318)
Q Consensus 207 ~~~~l~~~~~d------g~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d--------~~v~iwd~~ 272 (318)
++.+++.|+.+ ..+..| |..+.+|..+..+.........+ ..++..++.|+.+ ..+.+||..
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~y--d~~t~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~ 464 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECF--SLNTNKWSKGSPLPISHYGGCAI--YHDGKIYVIGGISYIDNIKVYNIVESYNPV 464 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEE--eCCCCeeeecCCCCccccCceEE--EECCEEEEECCccCCCCCcccceEEEecCC
Confidence 56777777732 346676 66777776554432211111122 2346666667643 238889988
Q ss_pred CCceeeee
Q 021036 273 GNSLSQVS 280 (318)
Q Consensus 273 ~~~~~~~~ 280 (318)
+++...+.
T Consensus 465 ~~~W~~~~ 472 (534)
T PHA03098 465 TNKWTELS 472 (534)
T ss_pred CCceeeCC
Confidence 77666543
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.52 Score=43.45 Aligned_cols=105 Identities=12% Similarity=-0.046 Sum_probs=57.3
Q ss_pred ccEEEEEeeeecCCCCCCCcEEEEEe------CCC--cEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEe
Q 021036 129 SWITSISLAVLSSDSSNPQVLLVTGS------SDG--SVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLI 200 (318)
Q Consensus 129 ~~v~~~~~~p~~~~~~~~~~~l~s~~------~d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 200 (318)
..+...+. +++|+.++... .|. .|.+++.. +.. ..+.. ....+.-.|+
T Consensus 350 ~~vsspai-------SpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~---------------g~~~t~PsWs 405 (591)
T PRK13616 350 GNITSAAL-------SRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE---------------GHSLTRPSWS 405 (591)
T ss_pred cCcccceE-------CCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec---------------CCCCCCceEC
Confidence 45677888 88888776655 243 44444542 221 11110 0124556777
Q ss_pred eccCCCCceEEEEEeCCCc-EEEe---------eeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEE
Q 021036 201 LPVQSPRLMLLAVGKGSGS-FDLW---------KCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRS 268 (318)
Q Consensus 201 ~~~~~~~~~~l~~~~~dg~-i~vw---------~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~i 268 (318)
|+|..+++...... +++. .++...+.... .....|..+.|||||..++... ++.|.+
T Consensus 406 -----pDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~-----~~~g~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 406 -----LDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS-----RVPGPISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred -----CCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh-----ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence 88887777653312 2222 11222221100 2345799999999999877655 466666
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.79 Score=39.74 Aligned_cols=58 Identities=19% Similarity=0.197 Sum_probs=33.9
Q ss_pred CceeEEEEcCCCCEEEEecCC-------------------CcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeE
Q 021036 243 QVVTGLAWAFDGCCLYSCSQD-------------------NFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLG 303 (318)
Q Consensus 243 ~~v~~~~~~~~~~~l~s~~~d-------------------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 303 (318)
.....++|.|||.+.++-+.. |.|.-++..++....+...- .....
T Consensus 124 ~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~---------------rnp~G 188 (367)
T TIGR02604 124 HSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGF---------------QNPYG 188 (367)
T ss_pred ccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCc---------------CCCcc
Confidence 346789999999865544421 33444444444333222111 13468
Q ss_pred EEEcCCCcEEEE
Q 021036 304 MAVSPGNLVVAM 315 (318)
Q Consensus 304 v~~sp~~~~l~~ 315 (318)
++|+|+|+++++
T Consensus 189 l~~d~~G~l~~t 200 (367)
T TIGR02604 189 HSVDSWGDVFFC 200 (367)
T ss_pred ceECCCCCEEEE
Confidence 999999988765
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.23 Score=47.73 Aligned_cols=101 Identities=13% Similarity=0.045 Sum_probs=64.7
Q ss_pred eEEEEeeccCCCC-ceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecC
Q 021036 195 SVLSLILPVQSPR-LMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 195 ~~l~~~~~~~~~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 273 (318)
.++.|+ |. ....+....|+.|++..+..... .+..+ .-....++++|+|.|+.++.|-..|++.-|...-
T Consensus 159 ~~~~wn-----P~vp~n~av~l~dlsl~V~~~~~~~~---~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l 229 (1405)
T KOG3630|consen 159 LKNVWN-----PLVPLNSAVDLSDLSLRVKSTKQLAQ---NVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL 229 (1405)
T ss_pred cccccc-----CCccchhhhhccccchhhhhhhhhhh---hhccc-CcccceeeEEeccccceeeEecCCCeEEEeeccc
Confidence 355565 43 45567777899999974332221 22222 2445679999999999999999999998886544
Q ss_pred CceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 274 NSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
.....+...+... ...|.+|.|-....++++
T Consensus 230 eik~~ip~Pp~~e-----------~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 230 EIKSEIPEPPVEE-----------NYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred ceeecccCCCcCC-----------CcceeEEEEecceeEEEE
Confidence 3223222222211 247889999877766654
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.04 Score=42.95 Aligned_cols=103 Identities=15% Similarity=0.125 Sum_probs=60.1
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEEC
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDG 164 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~ 164 (318)
..+++|+.+|.|.+|....-. .....+..-...|-++-- ...++.+..+++.||.++.|++
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g-------------~~~d~~~s~~e~i~~~Ip------~~~~~~~~c~~~~dg~ir~~n~ 131 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEG-------------AHSDRVCSGEESIDLGIP------NGRDSSLGCVGAQDGRIRACNI 131 (238)
T ss_pred ceEEeecccceEEEecCCccc-------------hHHHhhhcccccceeccc------cccccceeEEeccCCceeeecc
Confidence 678999999999999887311 111111122223333221 1334458899999999999998
Q ss_pred CCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEE--eCCCcEEEee
Q 021036 165 YIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVG--KGSGSFDLWK 224 (318)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~--~~dg~i~vw~ 224 (318)
.-.+.+.....|.. .++..+..+ ..++.++.+ +.|..++.|+
T Consensus 132 ~p~k~~g~~g~h~~-------------~~~e~~ivv-----~sd~~i~~a~~S~d~~~k~W~ 175 (238)
T KOG2444|consen 132 KPNKVLGYVGQHNF-------------ESGEELIVV-----GSDEFLKIADTSHDRVLKKWN 175 (238)
T ss_pred ccCceeeeeccccC-------------CCcceeEEe-----cCCceEEeeccccchhhhhcc
Confidence 87665554443331 133333443 455555555 6666666664
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.64 Score=41.92 Aligned_cols=64 Identities=13% Similarity=0.018 Sum_probs=38.0
Q ss_pred CCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCC-----CcEEEEEecCCce
Q 021036 206 PRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQD-----NFVRSWIFHGNSL 276 (318)
Q Consensus 206 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-----~~v~iwd~~~~~~ 276 (318)
-++.+.+.|+ .+.+| |..+.+|..+..+.........+. -+++..+.||.+ ..+..||..+++.
T Consensus 406 ~~~~IYv~GG---~~e~y--dp~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W 474 (480)
T PHA02790 406 FGRRLFLVGR---NAEFY--CESSNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRTYSW 474 (480)
T ss_pred ECCEEEEECC---ceEEe--cCCCCcEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEEEEECCCCeE
Confidence 3567777774 56778 667788876665543222222222 356777777754 3566777666554
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.85 Score=36.95 Aligned_cols=126 Identities=8% Similarity=0.062 Sum_probs=75.7
Q ss_pred eeeccccccEEEEEeeeecCCCCCC-CcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEe
Q 021036 122 GLFQAHNSWITSISLAVLSSDSSNP-QVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLI 200 (318)
Q Consensus 122 ~~~~~h~~~v~~~~~~p~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 200 (318)
+.+.+-...+..|+| .++ +.++++....+.|..++.. |+.+..+.... ....-.|++.
T Consensus 15 ~~l~g~~~e~SGLTy-------~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g-------------~~D~EgI~y~ 73 (248)
T PF06977_consen 15 KPLPGILDELSGLTY-------NPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDG-------------FGDYEGITYL 73 (248)
T ss_dssp EE-TT--S-EEEEEE-------ETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS--------------SSEEEEEE-
T ss_pred eECCCccCCccccEE-------cCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCC-------------CCCceeEEEE
Confidence 345565667999999 665 5577777778899888874 67766654322 2245678887
Q ss_pred eccCCCCceEEEEEeCCCcEEEeeeccCCCee--eEeeeee-----cccCceeEEEEcCCCCEEEEecCCCcEEEEEecC
Q 021036 201 LPVQSPRLMLLAVGKGSGSFDLWKCDISCNKF--DKVGSYN-----AHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 201 ~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~--~~~~~~~-----~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 273 (318)
.++.++++.-.++.+.+++++..+... .....+. .+...+..++|+|.+..|+.+-+..-..+|.++.
T Consensus 74 -----g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~ 148 (248)
T PF06977_consen 74 -----GNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNG 148 (248)
T ss_dssp -----STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEES
T ss_pred -----CCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcc
Confidence 677777766678999998764433221 1112221 3456689999999888777777777778887764
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=95.70 E-value=1.3 Score=38.64 Aligned_cols=104 Identities=15% Similarity=0.085 Sum_probs=50.2
Q ss_pred CCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEE-EeCCCcEEEeeeccCCCeee
Q 021036 155 SDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAV-GKGSGSFDLWKCDISCNKFD 233 (318)
Q Consensus 155 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~-~~~dg~i~vw~~~~~~~~~~ 233 (318)
...++.+||+.+.+.++++...... ...-.+.|. .+ |+..+-++ +--..+|..|- ....+++.
T Consensus 220 yG~~l~vWD~~~r~~~Q~idLg~~g------------~~pLEvRfl--H~-P~~~~gFvg~aLss~i~~~~-k~~~g~W~ 283 (461)
T PF05694_consen 220 YGHSLHVWDWSTRKLLQTIDLGEEG------------QMPLEVRFL--HD-PDANYGFVGCALSSSIWRFY-KDDDGEWA 283 (461)
T ss_dssp S--EEEEEETTTTEEEEEEES-TTE------------EEEEEEEE---SS-TT--EEEEEEE--EEEEEEE-E-ETTEEE
T ss_pred ccCeEEEEECCCCcEeeEEecCCCC------------CceEEEEec--CC-CCccceEEEEeccceEEEEE-EcCCCCee
Confidence 3568999999999999988765320 012234443 22 33333333 33344455442 22344443
Q ss_pred E--eeeeecc-----------------cCceeEEEEcCCCCEEEE-ecCCCcEEEEEecCC
Q 021036 234 K--VGSYNAH-----------------DQVVTGLAWAFDGCCLYS-CSQDNFVRSWIFHGN 274 (318)
Q Consensus 234 ~--~~~~~~h-----------------~~~v~~~~~~~~~~~l~s-~~~d~~v~iwd~~~~ 274 (318)
. +..+... ..-|+.+..|.|.++|.. +=.+|.|+.||+...
T Consensus 284 a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 284 AEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp EEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred eeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence 2 2222111 245789999999998754 557899999999763
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=95.67 E-value=1.6 Score=39.52 Aligned_cols=164 Identities=18% Similarity=0.099 Sum_probs=82.0
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeecccccc--EEEEEeeeecCCCCCCCcEEEEEe--------
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSW--ITSISLAVLSSDSSNPQVLLVTGS-------- 154 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~~~~~p~~~~~~~~~~~l~s~~-------- 154 (318)
..++.++.+|.|.-+|.++++. +-.+...... -..+.-.|. -.+ ..++.++
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~--------------~W~~~~~~~~~~~~~i~ssP~----v~~-~~v~vg~~~~~~~~~ 171 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQ--------------VWKFGNNDQVPPGYTMTGAPT----IVK-KLVIIGSSGAEFFAC 171 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCE--------------eeeecCCCCcCcceEecCCCE----EEC-CEEEEeccccccccC
Confidence 5777888999999999998763 2222211110 000111000 012 3344443
Q ss_pred -CCCcEEEEECCCcceeeeecccccccccceee-----eeecc-cce-eEEEEeeccCCCCceEEEEEeCCC--------
Q 021036 155 -SDGSVRIWDGYIQELQKSAEAHCVPFSLLKEV-----VTVNT-VPI-SVLSLILPVQSPRLMLLAVGKGSG-------- 218 (318)
Q Consensus 155 -~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~v-~~l~~~~~~~~~~~~~l~~~~~dg-------- 218 (318)
.++.+..+|..+|+.+..+............. ..... ..+ ...++. +.+..++.++.++
T Consensus 172 ~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d-----~~~g~V~vg~~~g~~~~~~~~ 246 (488)
T cd00216 172 GVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYD-----PKTNLVYVGTGNGSPWNWGGR 246 (488)
T ss_pred CCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEe-----CCCCEEEEECCCCCCCccCCc
Confidence 36889999999999888765421100000000 00000 011 123344 4566777776665
Q ss_pred ----------cEEEeeeccCCCeeeEeeeee--cccC----ceeEEEEc----CCCC---EEEEecCCCcEEEEEecCCc
Q 021036 219 ----------SFDLWKCDISCNKFDKVGSYN--AHDQ----VVTGLAWA----FDGC---CLYSCSQDNFVRSWIFHGNS 275 (318)
Q Consensus 219 ----------~i~vw~~~~~~~~~~~~~~~~--~h~~----~v~~~~~~----~~~~---~l~s~~~d~~v~iwd~~~~~ 275 (318)
.|.-+ |..+++ ....++ .|.. ......+. -+|. .++.++.+|.+...|.++++
T Consensus 247 ~~~~~~~~~~~l~Al--d~~tG~--~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~ 322 (488)
T cd00216 247 RTPGDNLYTDSIVAL--DADTGK--VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGK 322 (488)
T ss_pred cCCCCCCceeeEEEE--cCCCCC--EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCc
Confidence 34444 777776 333332 1210 00000111 1333 57778889999999998876
Q ss_pred e
Q 021036 276 L 276 (318)
Q Consensus 276 ~ 276 (318)
.
T Consensus 323 ~ 323 (488)
T cd00216 323 L 323 (488)
T ss_pred E
Confidence 5
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=95.53 E-value=1.4 Score=37.95 Aligned_cols=92 Identities=17% Similarity=0.221 Sum_probs=54.1
Q ss_pred CCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeE-EEEcCCCCEE-EEecCC--C--cEEEEEec-CCceee
Q 021036 206 PRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTG-LAWAFDGCCL-YSCSQD--N--FVRSWIFH-GNSLSQ 278 (318)
Q Consensus 206 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~l-~s~~~d--~--~v~iwd~~-~~~~~~ 278 (318)
.+..++.....+|.-+||-++..++..+ .+....-.|.. +.|++++..| +++..+ + .|..-++. ++....
T Consensus 246 ~~~~~l~~s~~~G~~hly~~~~~~~~~~---~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~ 322 (353)
T PF00930_consen 246 DGNEFLWISERDGYRHLYLYDLDGGKPR---QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKC 322 (353)
T ss_dssp TSSEEEEEEETTSSEEEEEEETTSSEEE---ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEE
T ss_pred CCCEEEEEEEcCCCcEEEEEccccccee---ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEe
Confidence 4456666677899988887777776532 34444556644 6788887644 455442 2 44444555 444444
Q ss_pred eecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 279 VSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
+..... .| ..++|||++++++.
T Consensus 323 LT~~~~-----------~~----~~~~~Spdg~y~v~ 344 (353)
T PF00930_consen 323 LTCEDG-----------DH----YSASFSPDGKYYVD 344 (353)
T ss_dssp SSTTSS-----------TT----EEEEE-TTSSEEEE
T ss_pred ccCCCC-----------Cc----eEEEECCCCCEEEE
Confidence 332221 11 69999999998764
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=95.44 E-value=1.2 Score=36.42 Aligned_cols=150 Identities=15% Similarity=0.060 Sum_probs=82.4
Q ss_pred cEEEEEeeeecCCCCCCCcEEEEEe-CC--CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCC
Q 021036 130 WITSISLAVLSSDSSNPQVLLVTGS-SD--GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSP 206 (318)
Q Consensus 130 ~v~~~~~~p~~~~~~~~~~~l~s~~-~d--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~ 206 (318)
.+.+.++ +++++.++... .+ ..+.++... ........ ...+..-.|+ +
T Consensus 25 ~~~s~Av-------S~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~---------------g~~l~~PS~d-----~ 75 (253)
T PF10647_consen 25 DVTSPAV-------SPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLT---------------GGSLTRPSWD-----P 75 (253)
T ss_pred cccceEE-------CCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeecc---------------CCcccccccc-----C
Confidence 6788888 88887776655 23 344444433 22222110 1144555677 7
Q ss_pred CceEEEEEeCCCcEEEeeeccCCCeeeEeee-eecccCceeEEEEcCCCCEEEEec---CCCcEEEEEecC---Cceeee
Q 021036 207 RLMLLAVGKGSGSFDLWKCDISCNKFDKVGS-YNAHDQVVTGLAWAFDGCCLYSCS---QDNFVRSWIFHG---NSLSQV 279 (318)
Q Consensus 207 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~s~~---~d~~v~iwd~~~---~~~~~~ 279 (318)
++...+....+...+++. +...+....+.. ...-...|+.+.+||||..++.-. .++.|.+=-+.. +....+
T Consensus 76 ~g~~W~v~~~~~~~~~~~-~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l 154 (253)
T PF10647_consen 76 DGWVWTVDDGSGGVRVVR-DSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRL 154 (253)
T ss_pred CCCEEEEEcCCCceEEEE-ecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCccee
Confidence 887777777677777763 222222212211 111112899999999999776544 456777765532 201111
Q ss_pred ecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 280 SIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 280 ~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
. .+. .-.......+..++|.+++.+++.+.
T Consensus 155 ~-~~~-------~~~~~~~~~v~~v~W~~~~~L~V~~~ 184 (253)
T PF10647_consen 155 T-GPR-------RVAPPLLSDVTDVAWSDDSTLVVLGR 184 (253)
T ss_pred c-cce-------EecccccCcceeeeecCCCEEEEEeC
Confidence 0 000 00112234789999999998877654
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=95.42 E-value=1.3 Score=36.99 Aligned_cols=149 Identities=11% Similarity=0.030 Sum_probs=72.4
Q ss_pred cccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCC
Q 021036 128 NSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPR 207 (318)
Q Consensus 128 ~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~ 207 (318)
.+.+..+.- .++|+++++++......-||--...-.... ......|..+.|. |+
T Consensus 144 ~gs~~~~~r-------~~dG~~vavs~~G~~~~s~~~G~~~w~~~~--------------r~~~~riq~~gf~-----~~ 197 (302)
T PF14870_consen 144 SGSINDITR-------SSDGRYVAVSSRGNFYSSWDPGQTTWQPHN--------------RNSSRRIQSMGFS-----PD 197 (302)
T ss_dssp ---EEEEEE--------TTS-EEEEETTSSEEEEE-TT-SS-EEEE----------------SSS-EEEEEE------TT
T ss_pred cceeEeEEE-------CCCCcEEEEECcccEEEEecCCCccceEEc--------------cCccceehhceec-----CC
Confidence 456788877 889998888877666677775432111111 1123378999999 88
Q ss_pred ceEEEEEeCCCcEEEeeeccCCCeeeE-eeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecC-CCC
Q 021036 208 LMLLAVGKGSGSFDLWKCDISCNKFDK-VGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIP-TNT 285 (318)
Q Consensus 208 ~~~l~~~~~dg~i~vw~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~-~~~ 285 (318)
+.+.+.+ ..|.|+.=+.......+.. +.....-.-.+..++|.+++...++|+. |.+ +.....++--+.... ..
T Consensus 198 ~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~- 273 (302)
T PF14870_consen 198 GNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGEN- 273 (302)
T ss_dssp S-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTT-
T ss_pred CCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccC-
Confidence 8877765 7888777421011112211 1111112334788999999887776654 444 344444443322211 11
Q ss_pred CCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 286 PGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 286 ~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
-.+.++.|.|.++.+-++.|+
T Consensus 274 -----------~~~n~~~i~f~~~~~gf~lG~ 294 (302)
T PF14870_consen 274 -----------VPSNLYRIVFVNPDKGFVLGQ 294 (302)
T ss_dssp -----------SSS---EEEEEETTEEEEE-S
T ss_pred -----------CCCceEEEEEcCCCceEEECC
Confidence 113568888887777777664
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.40 E-value=2 Score=38.82 Aligned_cols=68 Identities=9% Similarity=0.007 Sum_probs=40.0
Q ss_pred CCceEEEEEeCCC---cEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeee
Q 021036 206 PRLMLLAVGKGSG---SFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVS 280 (318)
Q Consensus 206 ~~~~~l~~~~~dg---~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 280 (318)
-+|++.+.|+.++ .+..| |.++.+|..+..+.........+ .-+++..+.|+ .+.+||..++....+.
T Consensus 361 ~~g~IYviGG~~~~~~~ve~y--dp~~~~W~~~~~m~~~r~~~~~~--~~~~~IYv~GG---~~e~ydp~~~~W~~~~ 431 (480)
T PHA02790 361 INNVIYVIGGHSETDTTTEYL--LPNHDQWQFGPSTYYPHYKSCAL--VFGRRLFLVGR---NAEFYCESSNTWTLID 431 (480)
T ss_pred ECCEEEEecCcCCCCccEEEE--eCCCCEEEeCCCCCCccccceEE--EECCEEEEECC---ceEEecCCCCcEeEcC
Confidence 3678888887654 36677 67777776654443222222222 23466566663 5778888877665543
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.33 E-value=1.3 Score=36.21 Aligned_cols=147 Identities=14% Similarity=0.081 Sum_probs=89.8
Q ss_pred EEEEEeeeecCCCCCCCcEEEEEeCCCc-EEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCce
Q 021036 131 ITSISLAVLSSDSSNPQVLLVTGSSDGS-VRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLM 209 (318)
Q Consensus 131 v~~~~~~p~~~~~~~~~~~l~s~~~d~~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~ 209 (318)
-..+.++|. ...-++.+-.-|+ ..++|....+...++...+. .+-.-.-.|+ |||.
T Consensus 70 ~Hgi~~~p~------~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~------------RHfyGHGvfs-----~dG~ 126 (366)
T COG3490 70 GHGIAFHPA------LPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEG------------RHFYGHGVFS-----PDGR 126 (366)
T ss_pred cCCeecCCC------CcceEEEEecCCceEEEECCCCCcCcEEEecccC------------ceeecccccC-----CCCc
Confidence 345667332 2233555555554 56888888776666544332 1112233577 9999
Q ss_pred EEEEEeC-----CCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEE---------------
Q 021036 210 LLAVGKG-----SGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSW--------------- 269 (318)
Q Consensus 210 ~l~~~~~-----dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iw--------------- 269 (318)
+|+..-. -|.|=+|| .+ ..++.+.++..|.-....+.|.+||+.++.+. |-|..-
T Consensus 127 ~LYATEndfd~~rGViGvYd--~r-~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNldsMeP 201 (366)
T COG3490 127 LLYATENDFDPNRGVIGVYD--AR-EGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLDSMEP 201 (366)
T ss_pred EEEeecCCCCCCCceEEEEe--cc-cccceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchhhcCc
Confidence 9887643 46789995 44 44557888888888888999999999887764 333332
Q ss_pred -----EecCCceeeeecCCCCCCccccccCC--CcceeeeEEEEcCCCcEEEEEe
Q 021036 270 -----IFHGNSLSQVSIPTNTPGLQSCTDLP--DAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 270 -----d~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
|..++.+.+ ...++ .+...+..++..+||+..+-++
T Consensus 202 Slvlld~atG~lie------------kh~Lp~~l~~lSiRHld~g~dgtvwfgcQ 244 (366)
T COG3490 202 SLVLLDAATGNLIE------------KHTLPASLRQLSIRHLDIGRDGTVWFGCQ 244 (366)
T ss_pred cEEEEeccccchhh------------hccCchhhhhcceeeeeeCCCCcEEEEEE
Confidence 222222211 11222 3445788999999998877654
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.26 E-value=1.5 Score=36.78 Aligned_cols=85 Identities=15% Similarity=0.157 Sum_probs=52.8
Q ss_pred ceeEEEEeeccCCCCceEEEEEeC-CCcEEEeeeccCCCe---eeEeeeeecccCceeEEEEcCCCCEEEEecCCC-cEE
Q 021036 193 PISVLSLILPVQSPRLMLLAVGKG-SGSFDLWKCDISCNK---FDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDN-FVR 267 (318)
Q Consensus 193 ~v~~l~~~~~~~~~~~~~l~~~~~-dg~i~vw~~~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~-~v~ 267 (318)
.-+.|+|+ ||++.|+.+.. .+.|.-|+++..+.. ......+....+..-.++...+|.+.+++..+| .|.
T Consensus 164 ~~NGla~S-----pDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~ 238 (307)
T COG3386 164 IPNGLAFS-----PDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVV 238 (307)
T ss_pred ecCceEEC-----CCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEE
Confidence 45789999 99977777764 477888876632221 111122222345556678888888775555554 899
Q ss_pred EEEecCCceeeeecC
Q 021036 268 SWIFHGNSLSQVSIP 282 (318)
Q Consensus 268 iwd~~~~~~~~~~~~ 282 (318)
+|+........+...
T Consensus 239 ~~~pdG~l~~~i~lP 253 (307)
T COG3386 239 RFNPDGKLLGEIKLP 253 (307)
T ss_pred EECCCCcEEEEEECC
Confidence 999885444444443
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.18 E-value=1.3 Score=35.58 Aligned_cols=69 Identities=16% Similarity=0.074 Sum_probs=49.9
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccc-cccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEE
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAH-NSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIW 162 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iw 162 (318)
|++++.|...|.+++.+.++|+. ...+..- .-.+.. .. .+++.++..|+.|++....
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~--------------~w~f~~~~~vk~~a-~~-------d~~~glIycgshd~~~yal 120 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQ--------------IWNFVILETVKVRA-QC-------DFDGGLIYCGSHDGNFYAL 120 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhh--------------eeeeeehhhhccce-EE-------cCCCceEEEecCCCcEEEe
Confidence 47899999999999999999742 2222221 112222 22 5678899999999999999
Q ss_pred ECCCcceeeeec
Q 021036 163 DGYIQELQKSAE 174 (318)
Q Consensus 163 d~~~~~~~~~~~ 174 (318)
|.++..++...+
T Consensus 121 D~~~~~cVyksk 132 (354)
T KOG4649|consen 121 DPKTYGCVYKSK 132 (354)
T ss_pred cccccceEEecc
Confidence 999888776644
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.58 Score=36.95 Aligned_cols=94 Identities=9% Similarity=-0.045 Sum_probs=60.0
Q ss_pred ccCCCCC-ccEEEEecCCCcEEEEE--ccCCccccccccccCCceeEEeeecc---cc-ccEEEEEeeeecCCCCCCCcE
Q 021036 77 QNGSSNW-FSILAVGGRSGKVSLWR--ICVPKCYSVEDCKVPTTAVLIGLFQA---HN-SWITSISLAVLSSDSSNPQVL 149 (318)
Q Consensus 77 ~~~~s~~-~~~l~~g~~dg~i~iw~--~~~~~~~~~~~~~~~~~~~~~~~~~~---h~-~~v~~~~~~p~~~~~~~~~~~ 149 (318)
.++++.+ ..+.++-+.+-+|.-|| ..+|.... .+.+-.++. .. -.--.++. ..+|.+
T Consensus 162 gl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~sn---------r~~i~dlrk~~~~e~~~PDGm~I-------D~eG~L 225 (310)
T KOG4499|consen 162 GLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSN---------RKVIFDLRKSQPFESLEPDGMTI-------DTEGNL 225 (310)
T ss_pred cccccccCcEEEEEccCceEEeeeecCCCcccccC---------cceeEEeccCCCcCCCCCCcceE-------ccCCcE
Confidence 4455544 44556667788888888 44554321 111111111 11 11134555 568888
Q ss_pred EEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEe
Q 021036 150 LVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLI 200 (318)
Q Consensus 150 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 200 (318)
.+++-..++|...|..+|+.+..+..... .+++++|-
T Consensus 226 ~Va~~ng~~V~~~dp~tGK~L~eiklPt~--------------qitsccFg 262 (310)
T KOG4499|consen 226 YVATFNGGTVQKVDPTTGKILLEIKLPTP--------------QITSCCFG 262 (310)
T ss_pred EEEEecCcEEEEECCCCCcEEEEEEcCCC--------------ceEEEEec
Confidence 89888899999999999999988876554 78888886
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.10 E-value=1.3 Score=35.07 Aligned_cols=95 Identities=6% Similarity=-0.040 Sum_probs=59.7
Q ss_pred eEEEEeeccCCCCce-EEEEEeCCCcEEEeeeccCCCeee---Eeeeeec---cc-CceeEEEEcCCCCEEEEecCCCcE
Q 021036 195 SVLSLILPVQSPRLM-LLAVGKGSGSFDLWKCDISCNKFD---KVGSYNA---HD-QVVTGLAWAFDGCCLYSCSQDNFV 266 (318)
Q Consensus 195 ~~l~~~~~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~---~~~~~~~---h~-~~v~~~~~~~~~~~l~s~~~d~~v 266 (318)
+.++|+ .+.+ +.++-+.+-.|.-||.|..++... .+..++. .+ ...-.++.+.+|.+.+++-..++|
T Consensus 161 Ngl~Wd-----~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V 235 (310)
T KOG4499|consen 161 NGLAWD-----SDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTV 235 (310)
T ss_pred cccccc-----ccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEE
Confidence 467777 5554 445566777888898777766431 2222322 11 112345666778888888788999
Q ss_pred EEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcC
Q 021036 267 RSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSP 308 (318)
Q Consensus 267 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp 308 (318)
...|..++++......|. ..+++++|--
T Consensus 236 ~~~dp~tGK~L~eiklPt--------------~qitsccFgG 263 (310)
T KOG4499|consen 236 QKVDPTTGKILLEIKLPT--------------PQITSCCFGG 263 (310)
T ss_pred EEECCCCCcEEEEEEcCC--------------CceEEEEecC
Confidence 999999987654332221 2678888874
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=95.09 E-value=2 Score=38.79 Aligned_cols=131 Identities=15% Similarity=0.146 Sum_probs=72.5
Q ss_pred cccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCC-----cceeeeecc-cccccccceeeeeecccceeEEEE
Q 021036 126 AHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYI-----QELQKSAEA-HCVPFSLLKEVVTVNTVPISVLSL 199 (318)
Q Consensus 126 ~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~l~~ 199 (318)
+.-..|..+.|.|..... .-.|++..-...|.+|-+.- ++.+..-.. -..++. .--..+.|
T Consensus 54 GqFEhV~GlsW~P~~~~~---~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~p----------vLpQGCVW 120 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTAD---TPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFP----------VLPQGCVW 120 (671)
T ss_pred eccceeeeeeecCcccCC---CCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcc----------cCCCcccc
Confidence 444679999997765322 22355555678999998762 121111000 000110 01245678
Q ss_pred eeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEe-cCCCcEEEEEecCCcee
Q 021036 200 ILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSC-SQDNFVRSWIFHGNSLS 277 (318)
Q Consensus 200 ~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~d~~v~iwd~~~~~~~ 277 (318)
+ |....|++=.....=.+++......+ ....+ ...+.|.|.+|..||+.|+.+ +..=.-+|||-....+.
T Consensus 121 H-----Pk~~iL~VLT~~dvSV~~sV~~d~sr--VkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~ 191 (671)
T PF15390_consen 121 H-----PKKAILTVLTARDVSVLPSVHCDSSR--VKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLH 191 (671)
T ss_pred c-----CCCceEEEEecCceeEeeeeeeCCce--EEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhh
Confidence 8 77777766554444344433222222 22233 356789999999999977655 33445788886544443
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=95.03 E-value=1.1 Score=40.24 Aligned_cols=109 Identities=16% Similarity=0.085 Sum_probs=61.5
Q ss_pred ceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCee-eEeeeeec-ccC----ceeEEEEcCCCCEEEEecCCCcE
Q 021036 193 PISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKF-DKVGSYNA-HDQ----VVTGLAWAFDGCCLYSCSQDNFV 266 (318)
Q Consensus 193 ~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~-~~~~~~~~-h~~----~v~~~~~~~~~~~l~s~~~d~~v 266 (318)
-|..+.|.+........+||+- ....|.+|.+..+..+. +.+..... ... -.....|+|....|+.-.....-
T Consensus 58 hV~GlsW~P~~~~~~paLLAVQ-HkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 58 HVHGLSWAPPCTADTPALLAVQ-HKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred eeeeeeecCcccCCCCceEEEe-ccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence 6888999833221123455555 47789999775433221 11111111 111 12456799998877765555444
Q ss_pred EEEEecCCc-eeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 267 RSWIFHGNS-LSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 267 ~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
.+++++... ........ .+.|.+.+|.+||+.|+++
T Consensus 137 V~~sV~~d~srVkaDi~~--------------~G~IhCACWT~DG~RLVVA 173 (671)
T PF15390_consen 137 VLPSVHCDSSRVKADIKT--------------SGLIHCACWTKDGQRLVVA 173 (671)
T ss_pred EeeeeeeCCceEEEeccC--------------CceEEEEEecCcCCEEEEE
Confidence 566765432 22222222 2488999999999987764
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=95.01 E-value=1.9 Score=36.41 Aligned_cols=165 Identities=15% Similarity=0.106 Sum_probs=86.8
Q ss_pred cEEEEecCCCcEEEEEccC-CccccccccccCCceeEEeeeccccccEE-EEEeeeecCCCCCCCcEEEEEeCCCcEEEE
Q 021036 85 SILAVGGRSGKVSLWRICV-PKCYSVEDCKVPTTAVLIGLFQAHNSWIT-SISLAVLSSDSSNPQVLLVTGSSDGSVRIW 162 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~p~~~~~~~~~~~l~s~~~d~~v~iw 162 (318)
.-+.+-+.||++.-..+.. |+.. .+....|....+++. .-.+ ...+..++--+.+|.|+--
T Consensus 148 ~~F~~lC~DGsl~~v~Ld~~Gk~~----------~~~t~~F~~~~dp~f~~~~~-------~~~~~~~~F~Sy~G~v~~~ 210 (342)
T PF06433_consen 148 RGFSMLCGDGSLLTVTLDADGKEA----------QKSTKVFDPDDDPLFEHPAY-------SRDGGRLYFVSYEGNVYSA 210 (342)
T ss_dssp TEEEEEETTSCEEEEEETSTSSEE----------EEEEEESSTTTS-B-S--EE-------ETTTTEEEEEBTTSEEEEE
T ss_pred CceEEEecCCceEEEEECCCCCEe----------EeeccccCCCCcccccccce-------ECCCCeEEEEecCCEEEEE
Confidence 4567778899999888874 3311 011111222222222 2222 2333345546788998888
Q ss_pred ECCCcceeeeecccccccccceee---eeecccceeEEEEeeccCCCCceEEEEEe-------CCCcEEEeeeccCCCee
Q 021036 163 DGYIQELQKSAEAHCVPFSLLKEV---VTVNTVPISVLSLILPVQSPRLMLLAVGK-------GSGSFDLWKCDISCNKF 232 (318)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~l~~~~~~~~~~~~~l~~~~-------~dg~i~vw~~~~~~~~~ 232 (318)
|+........ . ++.+.... ..--.+...-++++ ++.+.+++.-. .|+.-.||-+|..+++
T Consensus 211 dlsg~~~~~~-~----~~~~~t~~e~~~~WrPGG~Q~~A~~----~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~k- 280 (342)
T PF06433_consen 211 DLSGDSAKFG-K----PWSLLTDAEKADGWRPGGWQLIAYH----AASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHK- 280 (342)
T ss_dssp EETTSSEEEE-E----EEESS-HHHHHTTEEE-SSS-EEEE----TTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTE-
T ss_pred eccCCccccc-C----cccccCccccccCcCCcceeeeeec----cccCeEEEEecCCCCCCccCCceEEEEEECCCCe-
Confidence 8876542211 0 11110000 00011234456676 23344433322 4555678888999888
Q ss_pred eEeeeeecccCceeEEEEcCCCC-EEEE-ecCCCcEEEEEecCCceee
Q 021036 233 DKVGSYNAHDQVVTGLAWAFDGC-CLYS-CSQDNFVRSWIFHGNSLSQ 278 (318)
Q Consensus 233 ~~~~~~~~h~~~v~~~~~~~~~~-~l~s-~~~d~~v~iwd~~~~~~~~ 278 (318)
.+.++.. ..++.+|..+.+.+ +|++ ...++.+.+||..+++...
T Consensus 281 -rv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 281 -RVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp -EEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred -EEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence 5666653 23577899998765 5544 4568999999999987664
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.98 E-value=3.4 Score=39.17 Aligned_cols=139 Identities=19% Similarity=0.092 Sum_probs=72.2
Q ss_pred ceEEeeCCCceeEeecCCCCCCCceecchhcccc-ccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEE
Q 021036 19 PTVAASKSKGNSITKIPSNCCLPLITADQYASRS-AMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVS 97 (318)
Q Consensus 19 ~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~ 97 (318)
.-+....|+.+.+||-.... +..+......... ....+......|.. .-...|..+.+++.|.+|+..|..|.+.
T Consensus 34 rNLl~~~d~~L~vWd~~e~~-l~~~nlr~~~~~~~~~~~~~~q~L~~~~---~~~f~v~~i~~n~~g~~lal~G~~~v~V 109 (717)
T PF10168_consen 34 RNLLACRDGDLFVWDSSECC-LLTVNLRSLESDAEGPAKSSYQKLLPSN---PPLFEVHQISLNPTGSLLALVGPRGVVV 109 (717)
T ss_pred eeeEEEeCCEEEEEECCCCE-EEEEeeccccccccCccccCcceeecCC---CCceeEEEEEECCCCCEEEEEcCCcEEE
Confidence 44666668999999876533 2222222111000 00000000111111 1125788888899999999988877444
Q ss_pred EEEccC-CccccccccccCCceeEEeee--------ccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcc
Q 021036 98 LWRICV-PKCYSVEDCKVPTTAVLIGLF--------QAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQE 168 (318)
Q Consensus 98 iw~~~~-~~~~~~~~~~~~~~~~~~~~~--------~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 168 (318)
+.=.+. |..-....++. ...-+++ ..+...|..+.|+|. +.++..|+.-..|+++++||+...+
T Consensus 110 ~~LP~r~g~~~~~~~g~~---~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~----s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 110 LELPRRWGKNGEFEDGKK---EINCRTVPVDERFFTSNSSLEIKQVRWHPW----SESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEeccccCccccccCCCc---ceeEEEEEechhhccCCCCceEEEEEEcCC----CCCCCeEEEEecCCEEEEEecCCCC
Confidence 332211 10000000000 0011111 134568999999776 3345678888899999999997543
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.14 Score=49.06 Aligned_cols=155 Identities=12% Similarity=-0.029 Sum_probs=85.6
Q ss_pred cccccCCCCCccEEEE--ecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEE
Q 021036 74 PVPQNGSSNWFSILAV--GGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLV 151 (318)
Q Consensus 74 ~v~~~~~s~~~~~l~~--g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~ 151 (318)
++..+.+.+++...++ .+.+-.|..||+++-.....+...+ ...-+..........++.|+|.-+. ..+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~p---l~~s~ts~ek~vf~~~~~wnP~vp~------n~a 172 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVP---LKNSATSFEKPVFQLKNVWNPLVPL------NSA 172 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccc---cccccchhccccccccccccCCccc------hhh
Confidence 4455555555454433 3344467889987532111000000 0000111122344568888554332 367
Q ss_pred EEeCCCcEEEEECCCcce-eeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCC
Q 021036 152 TGSSDGSVRIWDGYIQEL-QKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCN 230 (318)
Q Consensus 152 s~~~d~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~ 230 (318)
.+..|+.|++..+..... ...+.. ....++++|+ |.|+.+++|-.+|++.-|...+.-.
T Consensus 173 v~l~dlsl~V~~~~~~~~~v~s~p~---------------t~~~Tav~WS-----prGKQl~iG~nnGt~vQy~P~leik 232 (1405)
T KOG3630|consen 173 VDLSDLSLRVKSTKQLAQNVTSFPV---------------TNSQTAVLWS-----PRGKQLFIGRNNGTEVQYEPSLEIK 232 (1405)
T ss_pred hhccccchhhhhhhhhhhhhcccCc---------------ccceeeEEec-----cccceeeEecCCCeEEEeeccccee
Confidence 777889888877653221 111111 2267899999 9999999999999999994322211
Q ss_pred eeeEeeeeec-ccCceeEEEEcCCCCEEEE
Q 021036 231 KFDKVGSYNA-HDQVVTGLAWAFDGCCLYS 259 (318)
Q Consensus 231 ~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s 259 (318)
. .+..... ....|.+|.|-....++++
T Consensus 233 ~--~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 233 S--EIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred e--cccCCCcCCCcceeEEEEecceeEEEE
Confidence 1 1111111 1467899999877666654
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.82 E-value=1.8 Score=35.34 Aligned_cols=164 Identities=12% Similarity=0.055 Sum_probs=91.5
Q ss_pred CCCCCccEEEEec-----CCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEE
Q 021036 79 GSSNWFSILAVGG-----RSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTG 153 (318)
Q Consensus 79 ~~s~~~~~l~~g~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~ 153 (318)
.||++|.+|+..- .-|.|-|||...+ .+.+.++..|.-.-..+.| .++|+.++.+
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~-------------fqrvgE~~t~GiGpHev~l-------m~DGrtlvva 179 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREG-------------FQRVGEFSTHGIGPHEVTL-------MADGRTLVVA 179 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccc-------------cceecccccCCcCcceeEE-------ecCCcEEEEe
Confidence 4778889988753 3467899999853 4567778888877889999 8999988876
Q ss_pred eCCCcEEEE--------------------ECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEE
Q 021036 154 SSDGSVRIW--------------------DGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAV 213 (318)
Q Consensus 154 ~~d~~v~iw--------------------d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~ 213 (318)
. |-|..- |..+|..+.+..... ..+...+..+... ++|...+-
T Consensus 180 n--GGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~----------~l~~lSiRHld~g-----~dgtvwfg 242 (366)
T COG3490 180 N--GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPA----------SLRQLSIRHLDIG-----RDGTVWFG 242 (366)
T ss_pred C--CceecccccCccccchhhcCccEEEEeccccchhhhccCch----------hhhhcceeeeeeC-----CCCcEEEE
Confidence 4 333332 322332222111100 1223356777776 66665554
Q ss_pred EeCCCc-------EEEeeeccCCCeeeEeee----eecccCceeEEEEcCCCCE-EEEecCCCcEEEEEecCCceeeeec
Q 021036 214 GKGSGS-------FDLWKCDISCNKFDKVGS----YNAHDQVVTGLAWAFDGCC-LYSCSQDNFVRSWIFHGNSLSQVSI 281 (318)
Q Consensus 214 ~~~dg~-------i~vw~~~~~~~~~~~~~~----~~~h~~~v~~~~~~~~~~~-l~s~~~d~~v~iwd~~~~~~~~~~~ 281 (318)
+-..|. |-.+ ...+..+.+.. .......|-+++.+.+..+ .+|+-..+...+||..++.+.....
T Consensus 243 cQy~G~~~d~ppLvg~~---~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~ 319 (366)
T COG3490 243 CQYRGPRNDLPPLVGHF---RKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAA 319 (366)
T ss_pred EEeeCCCccCCcceeec---cCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccc
Confidence 432221 1111 11111111110 0112345567777765444 4555556678999999988765443
Q ss_pred C
Q 021036 282 P 282 (318)
Q Consensus 282 ~ 282 (318)
.
T Consensus 320 l 320 (366)
T COG3490 320 L 320 (366)
T ss_pred c
Confidence 3
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.53 E-value=1.2 Score=41.17 Aligned_cols=105 Identities=11% Similarity=0.144 Sum_probs=63.3
Q ss_pred CCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEc--CCCCEEEEecCCCcEEEEEecCCceeeeecCC
Q 021036 206 PRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWA--FDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPT 283 (318)
Q Consensus 206 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 283 (318)
.-++..++-+....+.|| |.+.+..+.-..+ ...+.|.+++|. |+|+.+++.+....|.+|.-...... ...|
T Consensus 39 s~~k~a~V~~~~~~LtIW--D~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~--~~~p 113 (631)
T PF12234_consen 39 SIKKIAVVDSSRSELTIW--DTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT--NKGP 113 (631)
T ss_pred ccCcEEEEECCCCEEEEE--EcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh--cCCc
Confidence 344555555556678999 6666665444444 356789999986 57889999999999999964220000 0001
Q ss_pred CCCCccccccCCCcc-eeeeEEEEcCCCcEEEEE
Q 021036 284 NTPGLQSCTDLPDAF-VSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 284 ~~~~~~~~~~~~~h~-~~v~~v~~sp~~~~l~~~ 316 (318)
....+ ...++..|+ .+|.+..|-++|..++..
T Consensus 114 ~w~~i-~~i~i~~~T~h~Igds~Wl~~G~LvV~s 146 (631)
T PF12234_consen 114 SWAPI-RKIDISSHTPHPIGDSIWLKDGTLVVGS 146 (631)
T ss_pred cccee-EEEEeecCCCCCccceeEecCCeEEEEe
Confidence 00000 112222333 478899999999877643
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=94.47 E-value=3.2 Score=36.60 Aligned_cols=115 Identities=13% Similarity=0.029 Sum_probs=64.0
Q ss_pred EEEEEeeeecCCCCCCCcEEEEE-eCCC----cEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCC
Q 021036 131 ITSISLAVLSSDSSNPQVLLVTG-SSDG----SVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQS 205 (318)
Q Consensus 131 v~~~~~~p~~~~~~~~~~~l~s~-~~d~----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 205 (318)
+....+ ++++++++-+ +..| .++++|+.+++.+...-.. .....+.|.
T Consensus 126 ~~~~~~-------Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~---------------~~~~~~~W~----- 178 (414)
T PF02897_consen 126 LGGFSV-------SPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN---------------PKFSSVSWS----- 178 (414)
T ss_dssp EEEEEE-------TTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE---------------EESEEEEEC-----
T ss_pred eeeeeE-------CCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc---------------cccceEEEe-----
Confidence 335667 8899888765 3334 5999999998655421110 012238888
Q ss_pred CCceEEEEEeCCC---------c--EEEeeeccCCCee--eEeeeeecccCceeEEEEcCCCCEEEEec---CC-CcEEE
Q 021036 206 PRLMLLAVGKGSG---------S--FDLWKCDISCNKF--DKVGSYNAHDQVVTGLAWAFDGCCLYSCS---QD-NFVRS 268 (318)
Q Consensus 206 ~~~~~l~~~~~dg---------~--i~vw~~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~~---~d-~~v~i 268 (318)
++++.|+....+. . |+.| .+.+..- ..+............+..++++++++..+ .+ ..+.+
T Consensus 179 ~d~~~~~y~~~~~~~~~~~~~~~~~v~~~--~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~ 256 (414)
T PF02897_consen 179 DDGKGFFYTRFDEDQRTSDSGYPRQVYRH--KLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYL 256 (414)
T ss_dssp TTSSEEEEEECSTTTSS-CCGCCEEEEEE--ETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEE
T ss_pred CCCCEEEEEEeCcccccccCCCCcEEEEE--ECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEE
Confidence 8877665554332 2 5555 4433322 23332222222256788899999766432 22 45777
Q ss_pred EEecCC
Q 021036 269 WIFHGN 274 (318)
Q Consensus 269 wd~~~~ 274 (318)
.++..+
T Consensus 257 ~d~~~~ 262 (414)
T PF02897_consen 257 LDLDDG 262 (414)
T ss_dssp EECCCT
T ss_pred Eecccc
Confidence 777664
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=94.47 E-value=2.3 Score=34.98 Aligned_cols=107 Identities=17% Similarity=0.157 Sum_probs=57.9
Q ss_pred CCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEee
Q 021036 145 NPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWK 224 (318)
Q Consensus 145 ~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~ 224 (318)
..++.|+.|+.+| +.+++.........+. +..+|..+... ++-+.+++-+ |+.+++++
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~---------------~~~~I~ql~vl-----~~~~~llvLs-d~~l~~~~ 62 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL---------------KLSSITQLSVL-----PELNLLLVLS-DGQLYVYD 62 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe---------------ecceEEEEEEe-----cccCEEEEEc-CCccEEEE
Confidence 4567899999888 8999983222221111 12248888887 6666665555 59999997
Q ss_pred eccCCCeee--Eee--------eeecccCceeEEE--EcCCCCEEEEecCCCcEEEEEecC
Q 021036 225 CDISCNKFD--KVG--------SYNAHDQVVTGLA--WAFDGCCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 225 ~~~~~~~~~--~~~--------~~~~h~~~v~~~~--~~~~~~~l~s~~~d~~v~iwd~~~ 273 (318)
++.-..... ... ........+...+ -...+...++......|.+|....
T Consensus 63 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~ 123 (275)
T PF00780_consen 63 LDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWND 123 (275)
T ss_pred chhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEEC
Confidence 543221110 000 0011122333333 112344444455556899998865
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=94.20 E-value=3.6 Score=36.15 Aligned_cols=166 Identities=10% Similarity=0.052 Sum_probs=88.5
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEE
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWD 163 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd 163 (318)
...|++|+.+|.++||+...++... ...+ .-..-..+|-.+..-+|.+. .+...|+. -.-..+.+|.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~---------~~ll-lE~~l~~PILqv~~G~F~s~--~~~~~LaV-LhP~kl~vY~ 103 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQP---------EDLL-LETQLKDPILQVECGKFVSG--SEDLQLAV-LHPRKLSVYS 103 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCC---------ccEE-EEEecCCcEEEEEeccccCC--CCcceEEE-ecCCEEEEEE
Confidence 4789999999999999996543210 1111 11233579999998776432 23334444 4557888888
Q ss_pred CCCcceeeeecccccccccceeeeeecc--cceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecc
Q 021036 164 GYIQELQKSAEAHCVPFSLLKEVVTVNT--VPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAH 241 (318)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h 241 (318)
+....... .+...+.+ .....|. .....+++-.=.......++.+-+.||.+.+| +-+... ....+..
T Consensus 104 v~~~~g~~---~~g~~~~L--~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~f--eqe~~~--f~~~lp~- 173 (418)
T PF14727_consen 104 VSLVDGTV---EHGNQYQL--ELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFF--EQESFA--FSRFLPD- 173 (418)
T ss_pred EEecCCCc---ccCcEEEE--EEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEE--eCCcEE--EEEEcCC-
Confidence 73211000 00000000 0001111 11222222211111224788999999999999 333322 1222222
Q ss_pred cCceeEEEEcCCCCEEEEecCCCcEEEEEec
Q 021036 242 DQVVTGLAWAFDGCCLYSCSQDNFVRSWIFH 272 (318)
Q Consensus 242 ~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 272 (318)
---.-.+.|.+.-..|++++.+..+.-|...
T Consensus 174 ~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 174 FLLPGPLCYCPRTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred CCCCcCeEEeecCCEEEEecCceeEEEecHH
Confidence 1112346788887889999988888888753
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.29 Score=45.94 Aligned_cols=160 Identities=13% Similarity=0.099 Sum_probs=84.7
Q ss_pred CCCcEEEEEccC--CccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcce
Q 021036 92 RSGKVSLWRICV--PKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQEL 169 (318)
Q Consensus 92 ~dg~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 169 (318)
.-|.+.+|++.- |+... .-.+.........+.-+.|+|+-. +.-++..+-.++++++....+...
T Consensus 151 ~vg~lfVy~vd~l~G~iq~---------~l~v~~~~p~gs~~~~V~wcp~~~----~~~~ic~~~~~~~i~lL~~~ra~~ 217 (1283)
T KOG1916|consen 151 LVGELFVYDVDVLQGEIQP---------QLEVTPITPYGSDPQLVSWCPIAV----NKVYICYGLKGGEIRLLNINRALR 217 (1283)
T ss_pred HhhhhheeehHhhcccccc---------ceEEeecCcCCCCcceeeeccccc----ccceeeeccCCCceeEeeechHHH
Confidence 346788888863 33211 112233334455678888988853 335777777888888877654322
Q ss_pred eeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCe-eeEeeeeeccc-CceeE
Q 021036 170 QKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNK-FDKVGSYNAHD-QVVTG 247 (318)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~-~~~~~~~~~h~-~~v~~ 247 (318)
..+..|.....-...+ ..+-+.--.++ |||..|+.++.||.++.|.+-+.... .+++...+.|+ .+-.|
T Consensus 218 -~l~rsHs~~~~d~a~~---~~g~~~l~~lS-----pDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC 288 (1283)
T KOG1916|consen 218 -SLFRSHSQRVTDMAFF---AEGVLKLASLS-----PDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVC 288 (1283)
T ss_pred -HHHHhcCCCcccHHHH---hhchhhheeeC-----CCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCcee
Confidence 2222232110000000 00011111256 99999999999999999975443321 22455566666 33323
Q ss_pred EEEcCC-------CC--EEEEe-cCCCcEEEEEecC
Q 021036 248 LAWAFD-------GC--CLYSC-SQDNFVRSWIFHG 273 (318)
Q Consensus 248 ~~~~~~-------~~--~l~s~-~~d~~v~iwd~~~ 273 (318)
.-|+.+ +. +++++ ..+..+++|....
T Consensus 289 ~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~ 324 (1283)
T KOG1916|consen 289 WLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAP 324 (1283)
T ss_pred eeeccccccCCccceeEEEEecccCCcceeEeeccc
Confidence 323322 11 33343 3456688887654
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=93.97 E-value=3.8 Score=35.56 Aligned_cols=62 Identities=18% Similarity=0.169 Sum_probs=36.6
Q ss_pred cceeEEEEeeccCCCCceEEEEEeCC-------------------CcEEEeeeccCCCeeeEeeeeecccCceeEEEEcC
Q 021036 192 VPISVLSLILPVQSPRLMLLAVGKGS-------------------GSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAF 252 (318)
Q Consensus 192 ~~v~~l~~~~~~~~~~~~~l~~~~~d-------------------g~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 252 (318)
+....+.+. |+|.+.++-+.. | .+|.++..+.+.+.+. .++ .....++|+|
T Consensus 124 ~~~~~l~~g-----pDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g--~i~r~~pdg~~~e~~a--~G~-rnp~Gl~~d~ 193 (367)
T TIGR02604 124 HSLNSLAWG-----PDGWLYFNHGNTLASKVTRPGTSDESRQGLGG--GLFRYNPDGGKLRVVA--HGF-QNPYGHSVDS 193 (367)
T ss_pred ccccCceEC-----CCCCEEEecccCCCceeccCCCccCcccccCc--eEEEEecCCCeEEEEe--cCc-CCCccceECC
Confidence 356788888 888776654421 2 2443355555533221 233 3346899999
Q ss_pred CCCEEEEecCC
Q 021036 253 DGCCLYSCSQD 263 (318)
Q Consensus 253 ~~~~l~s~~~d 263 (318)
+|.++++-..+
T Consensus 194 ~G~l~~tdn~~ 204 (367)
T TIGR02604 194 WGDVFFCDNDD 204 (367)
T ss_pred CCCEEEEccCC
Confidence 99887765433
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=93.92 E-value=5 Score=36.73 Aligned_cols=164 Identities=16% Similarity=0.072 Sum_probs=85.4
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeec--ccc--ccEEEEEeeeecCCCCCCCcEEEEEe------
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQ--AHN--SWITSISLAVLSSDSSNPQVLLVTGS------ 154 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~--~~v~~~~~~p~~~~~~~~~~~l~s~~------ 154 (318)
..++.++.|+.+.-.|.++|+.+ -... .+. ..+.+ .|. -.++ .++.+.
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~--------------W~~~~~~~~~~~~~ts---sP~----v~~g-~Vivg~~~~~~~ 178 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVV--------------WSKKNGDYKAGYTITA---APL----VVKG-KVITGISGGEFG 178 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEE--------------eecccccccccccccC---CcE----EECC-EEEEeecccccC
Confidence 56777888999999999987632 1111 111 01111 010 1133 344443
Q ss_pred CCCcEEEEECCCcceeeeeccccccccc--------ce---------eeeeecccce-eEEEEeeccCCCCceEEEEEeC
Q 021036 155 SDGSVRIWDGYIQELQKSAEAHCVPFSL--------LK---------EVVTVNTVPI-SVLSLILPVQSPRLMLLAVGKG 216 (318)
Q Consensus 155 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~--------~~---------~~~~~~~~~v-~~l~~~~~~~~~~~~~l~~~~~ 216 (318)
.+|.|.-+|.++|+.+..+..-...... .. .........+ ..++++ +...+++.+..
T Consensus 179 ~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D-----~~~~lvy~~tG 253 (527)
T TIGR03075 179 VRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYD-----PETNLIYFGTG 253 (527)
T ss_pred CCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEc-----CCCCeEEEeCC
Confidence 2689999999999988775432211000 00 0000011111 234555 55555655552
Q ss_pred C-----Cc---------EEEeeeccCCCeeeEeeeeec--cc-------CceeEEEEcCCCC---EEEEecCCCcEEEEE
Q 021036 217 S-----GS---------FDLWKCDISCNKFDKVGSYNA--HD-------QVVTGLAWAFDGC---CLYSCSQDNFVRSWI 270 (318)
Q Consensus 217 d-----g~---------i~vw~~~~~~~~~~~~~~~~~--h~-------~~v~~~~~~~~~~---~l~s~~~d~~v~iwd 270 (318)
+ +. -.+.-+|.++++. ...++. |. ....-+....+|+ .++.+..+|.+++.|
T Consensus 254 np~p~~~~~r~gdnl~~~s~vAld~~TG~~--~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlD 331 (527)
T TIGR03075 254 NPSPWNSHLRPGDNLYTSSIVARDPDTGKI--KWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLD 331 (527)
T ss_pred CCCCCCCCCCCCCCccceeEEEEccccCCE--EEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEE
Confidence 2 21 1233347778873 333332 32 1111123334665 778999999999999
Q ss_pred ecCCcee
Q 021036 271 FHGNSLS 277 (318)
Q Consensus 271 ~~~~~~~ 277 (318)
..+++..
T Consensus 332 r~tG~~i 338 (527)
T TIGR03075 332 RTNGKLL 338 (527)
T ss_pred CCCCcee
Confidence 9988764
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.27 Score=27.41 Aligned_cols=31 Identities=10% Similarity=-0.118 Sum_probs=25.5
Q ss_pred CceeEEEEcCCC---CEEEEecCCCcEEEEEecC
Q 021036 243 QVVTGLAWAFDG---CCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 243 ~~v~~~~~~~~~---~~l~s~~~d~~v~iwd~~~ 273 (318)
+.|.++.|+|.. .+|+.+-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 368899999853 4888887789999999985
|
It contains a characteristic DLL sequence motif. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=93.88 E-value=4.9 Score=36.44 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=22.4
Q ss_pred EEEEEeCCCcEEEEECCCcceeeeec
Q 021036 149 LLVTGSSDGSVRIWDGYIQELQKSAE 174 (318)
Q Consensus 149 ~l~s~~~d~~v~iwd~~~~~~~~~~~ 174 (318)
.++.++.+|.+...|.++|+.+....
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~ 328 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARP 328 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeE
Confidence 67888899999999999999887654
|
The alignment model contains an 8-bladed beta-propeller. |
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=93.87 E-value=3.6 Score=34.91 Aligned_cols=56 Identities=14% Similarity=0.060 Sum_probs=30.0
Q ss_pred CCceEEEEEeCCCc----EEEeeeccCCCeeeEeeeeecccCce---eEE-EEcCCCCEEEEecCC
Q 021036 206 PRLMLLAVGKGSGS----FDLWKCDISCNKFDKVGSYNAHDQVV---TGL-AWAFDGCCLYSCSQD 263 (318)
Q Consensus 206 ~~~~~l~~~~~dg~----i~vw~~~~~~~~~~~~~~~~~h~~~v---~~~-~~~~~~~~l~s~~~d 263 (318)
.++++++.|+.++. +..| |..+.+|..+..+.....+. ... ....++++++.|+.+
T Consensus 170 ~~~~iYv~GG~~~~~~~~~~~y--d~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 170 LQNELYVFGGGSNIAYTDGYKY--SPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFN 233 (323)
T ss_pred ECCEEEEEcCCCCccccceEEE--ecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcC
Confidence 45778888876543 3455 77777776654432101111 111 112356777888766
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=93.87 E-value=5.8 Score=37.26 Aligned_cols=122 Identities=13% Similarity=0.101 Sum_probs=71.9
Q ss_pred CCCcEEEEEeCCCcEEEEECCCcc-eeeee----cccc--cccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCC
Q 021036 145 NPQVLLVTGSSDGSVRIWDGYIQE-LQKSA----EAHC--VPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGS 217 (318)
Q Consensus 145 ~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~----~~~~--~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~d 217 (318)
.+.+.|+.|..||.|.+|.+..-- .+... .... ....+ .+..--...+..+++.- -...+++|+++..
T Consensus 112 g~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P--~f~~~v~~SaWGLdIh~---~~~~rlIAVSsNs 186 (717)
T PF08728_consen 112 GGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKP--FFHLRVGASAWGLDIHD---YKKSRLIAVSSNS 186 (717)
T ss_pred CCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCC--CeEeecCCceeEEEEEe---cCcceEEEEecCC
Confidence 345789999999999999874310 00000 0000 00000 11111233566777640 0346789999999
Q ss_pred CcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCC-----CC-EEEEecCCCcEEEEEec
Q 021036 218 GSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFD-----GC-CLYSCSQDNFVRSWIFH 272 (318)
Q Consensus 218 g~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----~~-~l~s~~~d~~v~iwd~~ 272 (318)
..|.||-+.....+...... ..|...|.+|+|-++ |. ++++++-.|.+.+|++.
T Consensus 187 ~~VTVFaf~l~~~r~~~~~s-~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 187 QEVTVFAFALVDERFYHVPS-HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred ceEEEEEEeccccccccccc-cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 99999976654333211111 125667889999764 32 78888999999999883
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=93.73 E-value=6.9 Score=37.71 Aligned_cols=104 Identities=12% Similarity=0.066 Sum_probs=64.8
Q ss_pred CcEEEEEe----------CCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeC
Q 021036 147 QVLLVTGS----------SDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKG 216 (318)
Q Consensus 147 ~~~l~s~~----------~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~ 216 (318)
+.++++|. ..|.|.++.+..++.+.....+. -.+.+.++.. -+|+++|. -
T Consensus 787 ~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~------------v~Gav~aL~~------fngkllA~--I 846 (1096)
T KOG1897|consen 787 NTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETV------------VKGAVYALVE------FNGKLLAG--I 846 (1096)
T ss_pred ceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeee------------eccceeehhh------hCCeEEEe--c
Confidence 66777774 34667777666533332221111 1234555544 35776654 4
Q ss_pred CCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCC
Q 021036 217 SGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGN 274 (318)
Q Consensus 217 dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 274 (318)
+..|++|+|. ..+ .++.-..+..++..+...-.|..++.|..-+.+.+...+..
T Consensus 847 n~~vrLye~t--~~~--eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~ 900 (1096)
T KOG1897|consen 847 NQSVRLYEWT--TER--ELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGD 900 (1096)
T ss_pred CcEEEEEEcc--ccc--eehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEecc
Confidence 6689999653 332 34444567788888988889999999998888877766553
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=93.17 E-value=4 Score=33.26 Aligned_cols=68 Identities=9% Similarity=0.027 Sum_probs=42.5
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEEC
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDG 164 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~ 164 (318)
++..-.-.++...+||.++ .+.+.++.- ...=+.++. +++.|+.+.....+.++|.
T Consensus 101 ~l~qLTWk~~~~f~yd~~t--------------l~~~~~~~y-~~EGWGLt~---------dg~~Li~SDGS~~L~~~dP 156 (264)
T PF05096_consen 101 KLYQLTWKEGTGFVYDPNT--------------LKKIGTFPY-PGEGWGLTS---------DGKRLIMSDGSSRLYFLDP 156 (264)
T ss_dssp EEEEEESSSSEEEEEETTT--------------TEEEEEEE--SSS--EEEE---------CSSCEEEE-SSSEEEEE-T
T ss_pred EEEEEEecCCeEEEEcccc--------------ceEEEEEec-CCcceEEEc---------CCCEEEEECCccceEEECC
Confidence 3455556889999999987 445555532 334577776 4556777777789999999
Q ss_pred CCcceeeeeccc
Q 021036 165 YIQELQKSAEAH 176 (318)
Q Consensus 165 ~~~~~~~~~~~~ 176 (318)
.+.+....+...
T Consensus 157 ~~f~~~~~i~V~ 168 (264)
T PF05096_consen 157 ETFKEVRTIQVT 168 (264)
T ss_dssp TT-SEEEEEE-E
T ss_pred cccceEEEEEEE
Confidence 887777665543
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=93.07 E-value=5.2 Score=34.31 Aligned_cols=74 Identities=11% Similarity=0.073 Sum_probs=38.4
Q ss_pred CCceEEEEEeCCC------cEEEeeeccCCCeeeEeeeeecc-----cCceeEEEEcCCCCEEEEecCC-----------
Q 021036 206 PRLMLLAVGKGSG------SFDLWKCDISCNKFDKVGSYNAH-----DQVVTGLAWAFDGCCLYSCSQD----------- 263 (318)
Q Consensus 206 ~~~~~l~~~~~dg------~i~vw~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~l~s~~~d----------- 263 (318)
-++++++.|+.+. .+.+|+++....+|..+..+... .......+...++++++.|+.+
T Consensus 199 ~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~ 278 (346)
T TIGR03547 199 KGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNG 278 (346)
T ss_pred ECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcC
Confidence 3567777776431 24556555555566555544211 1101111222457777777753
Q ss_pred -----------CcEEEEEecCCceeee
Q 021036 264 -----------NFVRSWIFHGNSLSQV 279 (318)
Q Consensus 264 -----------~~v~iwd~~~~~~~~~ 279 (318)
..+.+||..+.+...+
T Consensus 279 ~~~~~~~~~~~~~~e~yd~~~~~W~~~ 305 (346)
T TIGR03547 279 KLYAHEGLIKAWSSEVYALDNGKWSKV 305 (346)
T ss_pred CccccCCCCceeEeeEEEecCCccccc
Confidence 1467888776655443
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=93.00 E-value=3.6 Score=32.27 Aligned_cols=107 Identities=12% Similarity=0.003 Sum_probs=60.1
Q ss_pred cEEEEEeCCCcEEEEECCCcc--eeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeC---CC---c
Q 021036 148 VLLVTGSSDGSVRIWDGYIQE--LQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKG---SG---S 219 (318)
Q Consensus 148 ~~l~s~~~d~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~---dg---~ 219 (318)
+.|+.+...+.|.+|++.... ....+..- +.|..+.++ ..|+++++--. .. .
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv---------------~~V~~l~y~-----~~GDYlvTlE~k~~~~~~~f 88 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV---------------GRVLQLVYS-----EAGDYLVTLEEKNKRSPVDF 88 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch---------------hheeEEEec-----cccceEEEEEeecCCccceE
Confidence 445454667889999998332 23333321 367888888 88999988532 22 5
Q ss_pred EEEe-eeccCCCeeeEee-eeecc---------------------cCceeEEEEcCC-CCEEEEecCCCcEEEEEecCCc
Q 021036 220 FDLW-KCDISCNKFDKVG-SYNAH---------------------DQVVTGLAWAFD-GCCLYSCSQDNFVRSWIFHGNS 275 (318)
Q Consensus 220 i~vw-~~~~~~~~~~~~~-~~~~h---------------------~~~v~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~ 275 (318)
+|+| +|+.....-.++. ++.|| ..++.+++..|- |+. +.|+ ++.+.+|.+....
T Consensus 89 vR~Y~NWr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~L-lVg~-~~~l~lf~l~~~~ 166 (215)
T PF14761_consen 89 VRAYFNWRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNL-LVGC-GNKLVLFTLKYQT 166 (215)
T ss_pred EEEEEEhhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCE-EEEc-CCEEEEEEEEEEE
Confidence 6776 3433211111111 12221 335567777774 554 4443 5688899886543
Q ss_pred e
Q 021036 276 L 276 (318)
Q Consensus 276 ~ 276 (318)
.
T Consensus 167 ~ 167 (215)
T PF14761_consen 167 I 167 (215)
T ss_pred E
Confidence 3
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=92.39 E-value=7.3 Score=34.32 Aligned_cols=164 Identities=16% Similarity=0.116 Sum_probs=81.5
Q ss_pred CCccceEEeeCCCceeEeecCCCCCCCc--eecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecC
Q 021036 15 SNTHPTVAASKSKGNSITKIPSNCCLPL--ITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGR 92 (318)
Q Consensus 15 ~~~~~~~t~s~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~ 92 (318)
.+...++.||.+|.+||++-..+..... +-..+ -+..++.+.+=.|.+.. +...||+ -.
T Consensus 35 ~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~--l~~PILqv~~G~F~s~~----------------~~~~LaV-Lh 95 (418)
T PF14727_consen 35 SGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ--LKDPILQVECGKFVSGS----------------EDLQLAV-LH 95 (418)
T ss_pred CCccEEEEeccccEEEEEccCCCCCCCccEEEEEe--cCCcEEEEEeccccCCC----------------CcceEEE-ec
Confidence 3456789999999999998755432211 11111 11121111111111110 1134444 44
Q ss_pred CCcEEEEEccCCccccccccccCCceeEEeeeccc--cccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCccee
Q 021036 93 SGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAH--NSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQ 170 (318)
Q Consensus 93 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 170 (318)
-..+.+|.+...... .+++ +.-.+..+..| ......+++-||-. ....+++..-+.||.+.+++-+.-...
T Consensus 96 P~kl~vY~v~~~~g~-~~~g----~~~~L~~~yeh~l~~~a~nm~~G~Fgg--~~~~~~IcVQS~DG~L~~feqe~~~f~ 168 (418)
T PF14727_consen 96 PRKLSVYSVSLVDGT-VEHG----NQYQLELIYEHSLQRTAYNMCCGPFGG--VKGRDFICVQSMDGSLSFFEQESFAFS 168 (418)
T ss_pred CCEEEEEEEEecCCC-cccC----cEEEEEEEEEEecccceeEEEEEECCC--CCCceEEEEEecCceEEEEeCCcEEEE
Confidence 566777777321100 0000 01112222233 23456667766653 223468899999999999997754322
Q ss_pred eeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEee
Q 021036 171 KSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWK 224 (318)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~ 224 (318)
..+...- -...+++. +..+.|++++.+..+.-|.
T Consensus 169 ~~lp~~l---------------lPgPl~Y~-----~~tDsfvt~sss~~l~~Yk 202 (418)
T PF14727_consen 169 RFLPDFL---------------LPGPLCYC-----PRTDSFVTASSSWTLECYK 202 (418)
T ss_pred EEcCCCC---------------CCcCeEEe-----ecCCEEEEecCceeEEEec
Confidence 2222211 12234565 6666777777666666664
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=92.33 E-value=2.6 Score=33.49 Aligned_cols=74 Identities=12% Similarity=0.056 Sum_probs=45.6
Q ss_pred CCcEEEEEeCCCcEEEEECCCcceeeee-cccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEee
Q 021036 146 PQVLLVTGSSDGSVRIWDGYIQELQKSA-EAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWK 224 (318)
Q Consensus 146 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~ 224 (318)
.+++|++-+.+|.+++||+.+++..... ..... ..............|..+.++ .+|.-+++-+ +|..+.|+
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pl-l~~~~~~~~~~~~~i~~~~lt-----~~G~PiV~ls-ng~~y~y~ 93 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPL-LNSSPVSDKSSSPNITSCSLT-----SNGVPIVTLS-NGDSYSYS 93 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHH-hcccccccCCCCCcEEEEEEc-----CCCCEEEEEe-CCCEEEec
Confidence 6678999999999999999988765432 10000 000000000234567778887 7787766655 68889985
Q ss_pred ec
Q 021036 225 CD 226 (318)
Q Consensus 225 ~~ 226 (318)
.+
T Consensus 94 ~~ 95 (219)
T PF07569_consen 94 PD 95 (219)
T ss_pred cc
Confidence 43
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.33 E-value=6.5 Score=33.61 Aligned_cols=155 Identities=13% Similarity=0.019 Sum_probs=78.6
Q ss_pred cccccCCCCCccEEEEecCCCcEEE-EEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEE
Q 021036 74 PVPQNGSSNWFSILAVGGRSGKVSL-WRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVT 152 (318)
Q Consensus 74 ~v~~~~~s~~~~~l~~g~~dg~i~i-w~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s 152 (318)
.+.++.+.+++.+++++. .|.+.. ++- .++. ...+ ...-...++++.+ .++++.+++
T Consensus 174 ~~~~i~~~~~g~~v~~g~-~G~i~~s~~~-gg~t-----------W~~~--~~~~~~~l~~i~~-------~~~g~~~~v 231 (334)
T PRK13684 174 VVRNLRRSPDGKYVAVSS-RGNFYSTWEP-GQTA-----------WTPH--QRNSSRRLQSMGF-------QPDGNLWML 231 (334)
T ss_pred eEEEEEECCCCeEEEEeC-CceEEEEcCC-CCCe-----------EEEe--eCCCcccceeeeE-------cCCCCEEEE
Confidence 456667777776666554 454432 221 1111 1111 1223457888988 777777665
Q ss_pred EeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCee
Q 021036 153 GSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKF 232 (318)
Q Consensus 153 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~ 232 (318)
+ ..|.+++=..+.+..-....... ......+..+.+. +++..++++ .+|.+..= .-....+
T Consensus 232 g-~~G~~~~~s~d~G~sW~~~~~~~----------~~~~~~l~~v~~~-----~~~~~~~~G-~~G~v~~S--~d~G~tW 292 (334)
T PRK13684 232 A-RGGQIRFNDPDDLESWSKPIIPE----------ITNGYGYLDLAYR-----TPGEIWAGG-GNGTLLVS--KDGGKTW 292 (334)
T ss_pred e-cCCEEEEccCCCCCccccccCCc----------cccccceeeEEEc-----CCCCEEEEc-CCCeEEEe--CCCCCCC
Confidence 5 45766543344444332221110 0011246677887 676665555 57766542 1112333
Q ss_pred eEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEE
Q 021036 233 DKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWI 270 (318)
Q Consensus 233 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd 270 (318)
+.+.....-....+.+.|..+++.++ .+..|.|..|+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~ 329 (334)
T PRK13684 293 EKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYV 329 (334)
T ss_pred eECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEec
Confidence 33321122224577788777766655 45678876664
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=92.15 E-value=7.9 Score=34.15 Aligned_cols=110 Identities=15% Similarity=0.054 Sum_probs=56.1
Q ss_pred CCCccceEEeeCC----CceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEE
Q 021036 14 DSNTHPTVAASKS----KGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAV 89 (318)
Q Consensus 14 ~~~~~~~~t~s~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~ 89 (318)
+.+...+++.+.. .+++++|+++++.+...-. ... ...+.|.+++ ..++.+
T Consensus 133 pdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~-----~~~---~~~~~W~~d~-----------------~~~~y~ 187 (414)
T PF02897_consen 133 PDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE-----NPK---FSSVSWSDDG-----------------KGFFYT 187 (414)
T ss_dssp TTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE-----EEE---SEEEEECTTS-----------------SEEEEE
T ss_pred CCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc-----ccc---cceEEEeCCC-----------------CEEEEE
Confidence 3344444443433 4488889998855332110 111 1128899887 233444
Q ss_pred ecCC----------CcEEEEEccCCccccccccccCCceeEEeeecccccc--EEEEEeeeecCCCCCCCcEEEEEeCC-
Q 021036 90 GGRS----------GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSW--ITSISLAVLSSDSSNPQVLLVTGSSD- 156 (318)
Q Consensus 90 g~~d----------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~~~~~p~~~~~~~~~~~l~s~~~d- 156 (318)
...+ ..|+.|.+.++.. .-...+...... ...+.. +.++++|+..+..
T Consensus 188 ~~~~~~~~~~~~~~~~v~~~~~gt~~~------------~d~lvfe~~~~~~~~~~~~~-------s~d~~~l~i~~~~~ 248 (414)
T PF02897_consen 188 RFDEDQRTSDSGYPRQVYRHKLGTPQS------------EDELVFEEPDEPFWFVSVSR-------SKDGRYLFISSSSG 248 (414)
T ss_dssp ECSTTTSS-CCGCCEEEEEEETTS-GG------------G-EEEEC-TTCTTSEEEEEE--------TTSSEEEEEEESS
T ss_pred EeCcccccccCCCCcEEEEEECCCChH------------hCeeEEeecCCCcEEEEEEe-------cCcccEEEEEEEcc
Confidence 3222 2367777766431 112233333222 556777 7888887754432
Q ss_pred ---CcEEEEECCCc
Q 021036 157 ---GSVRIWDGYIQ 167 (318)
Q Consensus 157 ---~~v~iwd~~~~ 167 (318)
..+.+.|+..+
T Consensus 249 ~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 249 TSESEVYLLDLDDG 262 (414)
T ss_dssp SSEEEEEEEECCCT
T ss_pred ccCCeEEEEecccc
Confidence 34777787764
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=91.89 E-value=6.7 Score=33.42 Aligned_cols=120 Identities=18% Similarity=0.131 Sum_probs=65.7
Q ss_pred ccceeEEEEeeccCCCCceEEEEEeCCCc------EEEeeeccCCCeeeEe-----eeeecccC--------ceeEEEEc
Q 021036 191 TVPISVLSLILPVQSPRLMLLAVGKGSGS------FDLWKCDISCNKFDKV-----GSYNAHDQ--------VVTGLAWA 251 (318)
Q Consensus 191 ~~~v~~l~~~~~~~~~~~~~l~~~~~dg~------i~vw~~~~~~~~~~~~-----~~~~~h~~--------~v~~~~~~ 251 (318)
.+.++.|.+. +++..+++-+.+|. +..+.++........+ ..+..-.+ ...+|++.
T Consensus 19 ~GGlSgl~~~-----~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~ 93 (326)
T PF13449_consen 19 FGGLSGLDYD-----PDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVP 93 (326)
T ss_pred cCcEeeEEEe-----CCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEe
Confidence 3467888898 66666666677777 6666544422111111 11111111 44578887
Q ss_pred CCCCEEEEecCC------CcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 252 FDGCCLYSCSQD------NFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 252 ~~~~~l~s~~~d------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
++|.++++.=.+ -.|+.++........+........-.........+....+|+++|||+.|.+
T Consensus 94 ~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~ 163 (326)
T PF13449_consen 94 PDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFA 163 (326)
T ss_pred cCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEE
Confidence 788877776666 6788888764333333222111000000022234567889999999995544
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=91.68 E-value=3.6 Score=38.97 Aligned_cols=77 Identities=18% Similarity=0.129 Sum_probs=52.2
Q ss_pred ccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccC--------CCeee-Eeeee--------ecccCceeEEEEcCC
Q 021036 191 TVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDIS--------CNKFD-KVGSY--------NAHDQVVTGLAWAFD 253 (318)
Q Consensus 191 ~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~--------~~~~~-~~~~~--------~~h~~~v~~~~~~~~ 253 (318)
...|..+.++ |+|.+++..+..|...+. +..+ .++.. ...++ ..+...|..+.|+|.
T Consensus 84 ~f~v~~i~~n-----~~g~~lal~G~~~v~V~~-LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~ 157 (717)
T PF10168_consen 84 LFEVHQISLN-----PTGSLLALVGPRGVVVLE-LPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPW 157 (717)
T ss_pred ceeEEEEEEC-----CCCCEEEEEcCCcEEEEE-eccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCC
Confidence 3478889998 999999999877765543 2221 11100 11111 123457889999996
Q ss_pred ---CCEEEEecCCCcEEEEEecC
Q 021036 254 ---GCCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 254 ---~~~l~s~~~d~~v~iwd~~~ 273 (318)
+..|+.-..|+++|+||+..
T Consensus 158 s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 158 SESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred CCCCCeEEEEecCCEEEEEecCC
Confidence 46888889999999999975
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.39 E-value=7.2 Score=32.21 Aligned_cols=144 Identities=12% Similarity=-0.007 Sum_probs=84.3
Q ss_pred cccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCC
Q 021036 128 NSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPR 207 (318)
Q Consensus 128 ~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~ 207 (318)
.+-+..+++ .+++...+..+.-++|.|+.+......+..... .+--+++. -.
T Consensus 86 ~~l~~Dv~v---------se~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt------------~gyaygv~-------vs 137 (370)
T COG5276 86 RDLFADVRV---------SEEYVYVADWSSGLRIVDISTPDSPTLIGFLNT------------DGYAYGVY-------VS 137 (370)
T ss_pred hhhhheeEe---------cccEEEEEcCCCceEEEeccCCCCcceeccccC------------CceEEEEE-------ec
Confidence 345667777 456788888888999999987654332221110 01223333 35
Q ss_pred ceEEEEEeCCCcEEEeeeccCCC-eeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCC
Q 021036 208 LMLLAVGKGSGSFDLWKCDISCN-KFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTP 286 (318)
Q Consensus 208 ~~~l~~~~~dg~i~vw~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~ 286 (318)
|++..++..+.-..+. |..+. ++....++......-..++.| |++-..+..|+-+.+-|+.......+..+-+.
T Consensus 138 Gn~aYVadlddgfLiv--dvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~- 212 (370)
T COG5276 138 GNYAYVADLDDGFLIV--DVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNT- 212 (370)
T ss_pred CCEEEEeeccCcEEEE--ECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEec-
Confidence 8888888855555555 44432 222344444444444566666 66666677889999999987554444333221
Q ss_pred CccccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 287 GLQSCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 287 ~~~~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
...+.++..+++--+++.
T Consensus 213 -----------g~g~~sv~vsdnr~y~vv 230 (370)
T COG5276 213 -----------GPGTYSVSVSDNRAYLVV 230 (370)
T ss_pred -----------CCceEEEEecCCeeEEEE
Confidence 115677777777666654
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=91.33 E-value=5.2 Score=37.52 Aligned_cols=125 Identities=10% Similarity=-0.027 Sum_probs=70.7
Q ss_pred CCccEEEEecCCCcEEEEEccCCcc-ccc-----cccccCCceeEEeeeccccccEEEEEeeeecCCCC--CCCcEEEEE
Q 021036 82 NWFSILAVGGRSGKVSLWRICVPKC-YSV-----EDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSS--NPQVLLVTG 153 (318)
Q Consensus 82 ~~~~~l~~g~~dg~i~iw~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~--~~~~~l~s~ 153 (318)
.+...|+.+.+||.|.+|..++=-. +.. .........++.-.+. -...++++++ . ...++||++
T Consensus 112 g~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdI-------h~~~~~rlIAVS 183 (717)
T PF08728_consen 112 GGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDI-------HDYKKSRLIAVS 183 (717)
T ss_pred CCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEE-------EecCcceEEEEe
Confidence 3467899999999999998753100 000 0000000011111122 2347899999 5 666788888
Q ss_pred eCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCce-EEEEEeCCCcEEEeee
Q 021036 154 SSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLM-LLAVGKGSGSFDLWKC 225 (318)
Q Consensus 154 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~-~l~~~~~dg~i~vw~~ 225 (318)
+....|.||-........... .. ..+.+.|.+++|......+.|. .+++++-.|.+.+|++
T Consensus 184 sNs~~VTVFaf~l~~~r~~~~-~s----------~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 184 SNSQEVTVFAFALVDERFYHV-PS----------HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cCCceEEEEEEeccccccccc-cc----------cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 888888888655321110000 00 1144577888887322222343 7888899999998865
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.21 E-value=0.042 Score=47.67 Aligned_cols=144 Identities=17% Similarity=0.219 Sum_probs=90.0
Q ss_pred ceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEe
Q 021036 57 SLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISL 136 (318)
Q Consensus 57 ~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 136 (318)
.....|-|.+ .-++.++.+..+..||-.... .-. ....+..-.++|
T Consensus 37 pi~~~w~~e~------------------~nlavaca~tiv~~YD~agq~---------------~le-~n~tg~aldm~w 82 (615)
T KOG2247|consen 37 PIIHRWRPEG------------------HNLAVACANTIVIYYDKAGQV---------------ILE-LNPTGKALDMAW 82 (615)
T ss_pred cceeeEecCC------------------CceehhhhhhHHHhhhhhcce---------------ecc-cCCchhHhhhhh
Confidence 3447888887 447777788888889876421 111 122445567888
Q ss_pred eeecCCCCCCCcEEE-EEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe
Q 021036 137 AVLSSDSSNPQVLLV-TGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK 215 (318)
Q Consensus 137 ~p~~~~~~~~~~~l~-s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~ 215 (318)
..+++.++ .+-..+.+.+||+.+....+ +.... ...-.-+.|+ +.+..++.+.
T Consensus 83 -------DkegdvlavlAek~~piylwd~n~eytqq-LE~gg-------------~~s~sll~ws-----Kg~~el~ig~ 136 (615)
T KOG2247|consen 83 -------DKEGDVLAVLAEKTGPIYLWDVNSEYTQQ-LESGG-------------TSSKSLLAWS-----KGTPELVIGN 136 (615)
T ss_pred -------ccccchhhhhhhcCCCeeechhhhhhHHH-HhccC-------------cchHHHHhhc-----cCCccccccc
Confidence 55665544 45567899999998653221 11110 1111225666 7888899999
Q ss_pred CCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCc
Q 021036 216 GSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNF 265 (318)
Q Consensus 216 ~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~ 265 (318)
..|.+.+| +..+.+ .+.....|...+++++|.+.+. .+.++.|..
T Consensus 137 ~~gn~viy--nhgtsR--~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~ 181 (615)
T KOG2247|consen 137 NAGNIVIY--NHGTSR--RIIVMGKHQRRGTQIAVTLEDY-VILCDCDNT 181 (615)
T ss_pred cccceEEE--eccchh--hhhhhcccccceeEEEecccce-eeecCcHHH
Confidence 99999999 444444 3333444888999999998874 444444433
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=91.19 E-value=1.6 Score=38.19 Aligned_cols=88 Identities=11% Similarity=0.078 Sum_probs=55.6
Q ss_pred cccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCC-------
Q 021036 72 KYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSS------- 144 (318)
Q Consensus 72 ~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~------- 144 (318)
...+.++..+|.+++.|+...=|.|.++|+.++..+ +.+++..+. .+.|.+......
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vv--------------rmWKGYRdA--qc~wi~~~~~~~~~~~~~~ 370 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVV--------------RMWKGYRDA--QCGWIEVPEEGDRDRSNSN 370 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhh--------------hhhccCccc--eEEEEEeeccccccccccc
Confidence 345778899999999999988999999999986644 334443321 112211111000
Q ss_pred -----CC-C-cEEEEEeCCCcEEEEECCCcceeeeecc
Q 021036 145 -----NP-Q-VLLVTGSSDGSVRIWDGYIQELQKSAEA 175 (318)
Q Consensus 145 -----~~-~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 175 (318)
.. . -+++-+-.-|.|.||.++.|..+..+..
T Consensus 371 ~~~~~~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 371 SPKSSSRFALFLVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred ccCCCCcceEEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 00 1 1344456789999999999987766543
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=91.10 E-value=9.5 Score=33.02 Aligned_cols=67 Identities=15% Similarity=-0.008 Sum_probs=32.5
Q ss_pred cEEEEecCCCcEEE--EEccCCccccccccccCCceeEEeeecccc-ccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEE
Q 021036 85 SILAVGGRSGKVSL--WRICVPKCYSVEDCKVPTTAVLIGLFQAHN-SWITSISLAVLSSDSSNPQVLLVTGSSDGSVRI 161 (318)
Q Consensus 85 ~~l~~g~~dg~i~i--w~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~i 161 (318)
++|+.+..||.-.+ .|+++++ . ..+.... .......+ +++++.++-......|+-
T Consensus 49 kllF~s~~dg~~nly~lDL~t~~--------------i-~QLTdg~g~~~~g~~~-------s~~~~~~~Yv~~~~~l~~ 106 (386)
T PF14583_consen 49 KLLFASDFDGNRNLYLLDLATGE--------------I-TQLTDGPGDNTFGGFL-------SPDDRALYYVKNGRSLRR 106 (386)
T ss_dssp EEEEEE-TTSS-EEEEEETTT-E--------------E-EE---SS-B-TTT-EE--------TTSSEEEEEETTTEEEE
T ss_pred EEEEEeccCCCcceEEEEcccCE--------------E-EECccCCCCCccceEE-------ecCCCeEEEEECCCeEEE
Confidence 56666666776554 4666643 2 2222221 22223445 566666665555678888
Q ss_pred EECCCcceeeee
Q 021036 162 WDGYIQELQKSA 173 (318)
Q Consensus 162 wd~~~~~~~~~~ 173 (318)
-|+.+.+....+
T Consensus 107 vdL~T~e~~~vy 118 (386)
T PF14583_consen 107 VDLDTLEERVVY 118 (386)
T ss_dssp EETTT--EEEEE
T ss_pred EECCcCcEEEEE
Confidence 898887654433
|
|
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.10 E-value=0.82 Score=39.77 Aligned_cols=157 Identities=15% Similarity=0.084 Sum_probs=80.1
Q ss_pred eeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeeccccee-EEEEe
Q 021036 122 GLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPIS-VLSLI 200 (318)
Q Consensus 122 ~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~l~~~ 200 (318)
+.+..-...|..+-. .|+|+.|..-+. .++.++++.+......--....+-. ..+.|+ .+..-
T Consensus 214 ~~L~~~~~~v~qllL-------~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~--------~~~~Vte~l~lL 277 (733)
T COG4590 214 RLLSVPFSDVSQLLL-------TPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGD--------SRHQVTEQLYLL 277 (733)
T ss_pred hhcCCCccchHhhEE-------CCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCc--------hHHHHHHHHHHH
Confidence 334444456677777 789988877665 6888888876433211000000000 001111 11122
Q ss_pred eccCCCCceEEEEEeCCCcEEEeeeccCCCe-e--eEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCcee
Q 021036 201 LPVQSPRLMLLAVGKGSGSFDLWKCDISCNK-F--DKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLS 277 (318)
Q Consensus 201 ~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~-~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 277 (318)
..|.-+++++.||-|.-| +|.+... . ..+..++-....+..+.-..+.+-+++-+..|++..+.....+..
T Consensus 278 -----~Gg~SLLv~~~dG~vsQW-Fdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~l 351 (733)
T COG4590 278 -----SGGFSLLVVHEDGLVSQW-FDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLL 351 (733)
T ss_pred -----hCceeEEEEcCCCceeee-eeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcce
Confidence 467788999999999999 3554332 1 112222212233333322222345677777888877765443332
Q ss_pred eeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 278 QVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
-...-. ....-+++||.+.++++
T Consensus 352 L~~~~~---------------~~~~~~~~Sp~~~~Ll~ 374 (733)
T COG4590 352 LFERAY---------------QAPQLVAMSPNQAYLLS 374 (733)
T ss_pred ehhhhh---------------cCcceeeeCcccchhee
Confidence 211111 13356777887776654
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=90.90 E-value=11 Score=33.20 Aligned_cols=115 Identities=10% Similarity=0.033 Sum_probs=62.5
Q ss_pred cccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceee--eecccccccccceeeeeecccceeEEEEeeccCC
Q 021036 128 NSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQK--SAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQS 205 (318)
Q Consensus 128 ~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 205 (318)
...++.+.+ .+++.+++++ .+|.+.. ....++... .+..... ......+..+.+.
T Consensus 280 ~~~l~~v~~-------~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~f~~~~~---------~~~~~~l~~v~~~----- 336 (398)
T PLN00033 280 ARRIQNMGW-------RADGGLWLLT-RGGGLYV-SKGTGLTEEDFDFEEADI---------KSRGFGILDVGYR----- 336 (398)
T ss_pred ccceeeeeE-------cCCCCEEEEe-CCceEEE-ecCCCCcccccceeeccc---------CCCCcceEEEEEc-----
Confidence 456888999 7777777655 5565443 333343111 1110000 0011247788886
Q ss_pred CCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEE
Q 021036 206 PRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSW 269 (318)
Q Consensus 206 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iw 269 (318)
+++..+++| ..|.+... .-....++....-..-....+.+.|.++++.+++| .+|.|.-|
T Consensus 337 ~d~~~~a~G-~~G~v~~s--~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 337 SKKEAWAAG-GSGILLRS--TDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred CCCcEEEEE-CCCcEEEe--CCCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 666666555 57877775 22333443332222234567899998877655554 67776554
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=90.75 E-value=11 Score=32.94 Aligned_cols=57 Identities=14% Similarity=0.017 Sum_probs=27.1
Q ss_pred CceEEEEEeCC----C--cEEEeeeccCCCeeeEeeeeecccC-----cee-EEEEcCCCCEEEEecCC
Q 021036 207 RLMLLAVGKGS----G--SFDLWKCDISCNKFDKVGSYNAHDQ-----VVT-GLAWAFDGCCLYSCSQD 263 (318)
Q Consensus 207 ~~~~l~~~~~d----g--~i~vw~~~~~~~~~~~~~~~~~h~~-----~v~-~~~~~~~~~~l~s~~~d 263 (318)
++++++.|+.+ . .++.++++..+.+|..+..+..... ... ..+...++++++.|+.+
T Consensus 221 ~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~ 289 (376)
T PRK14131 221 GNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGAN 289 (376)
T ss_pred CCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccC
Confidence 56677777632 2 2344444556666655544421110 011 11222456777777754
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=90.35 E-value=18 Score=35.06 Aligned_cols=127 Identities=13% Similarity=0.075 Sum_probs=70.9
Q ss_pred cccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECC-Ccceeee--ecccccccccceeeeeecccceeEEEEeeccC
Q 021036 128 NSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGY-IQELQKS--AEAHCVPFSLLKEVVTVNTVPISVLSLILPVQ 204 (318)
Q Consensus 128 ~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 204 (318)
...|.|+.+.|.-.. ....++++.|.++..+.+.-.. ....... +..... ...|--..+-
T Consensus 530 e~evaCLDisp~~d~-~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~i------------PRSIl~~~~e---- 592 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDA-PNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEII------------PRSILLTTFE---- 592 (1096)
T ss_pred cceeEEEecccCCCC-CCcceEEEEEeecceEEEEEECCCcceeeeeccCCCcc------------chheeeEEee----
Confidence 567999999554221 1234588999887766654433 2222211 111111 1123333443
Q ss_pred CCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEec
Q 021036 205 SPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFH 272 (318)
Q Consensus 205 ~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 272 (318)
.+..+|+++..||.+..|.++..++.....++..-...++.--.|+..++.-+-+..|+-..+|.-+
T Consensus 593 -~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n 659 (1096)
T KOG1897|consen 593 -GDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSN 659 (1096)
T ss_pred -ccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecC
Confidence 5578999999999999998888887654433323334565555666654433333335544555443
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=90.28 E-value=5.8 Score=35.36 Aligned_cols=136 Identities=14% Similarity=0.013 Sum_probs=69.4
Q ss_pred CCcEEE-EEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeec--cCCCCceEEEEEeCCCcEEE
Q 021036 146 PQVLLV-TGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILP--VQSPRLMLLAVGKGSGSFDL 222 (318)
Q Consensus 146 ~~~~l~-s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~~~~~~l~~~~~dg~i~v 222 (318)
+..+|+ .|..-..+.-.|++.|+.+.....+.. + -+.+.+. ++.-....-++|-.+..|.-
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~dd---------------v-vVqy~p~~kf~qmt~eqtlvGlS~~svFr 541 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDD---------------V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFR 541 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCc---------------c-eeecCCchhHHhcCccceEEeecccceEE
Confidence 333443 445556777778888888877665553 1 2334310 00001112233433444333
Q ss_pred eeeccCCCeeeEeeeeecccCceeEEEEcC----CCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcc
Q 021036 223 WKCDISCNKFDKVGSYNAHDQVVTGLAWAF----DGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAF 298 (318)
Q Consensus 223 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 298 (318)
-|...+..+. .+.. ....++.-.|+. ...++|.++..|.|++||.-+....+ -+++-.
T Consensus 542 IDPR~~gNKi-~v~e---sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKt--------------alP~lG 603 (776)
T COG5167 542 IDPRARGNKI-KVVE---SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKT--------------ALPGLG 603 (776)
T ss_pred ecccccCCce-eeee---ehhccccccccccccccCceEEEecCCCceeeehhhcchhhh--------------cCcccc
Confidence 3222333322 1111 122233333433 23489999999999999975433322 122233
Q ss_pred eeeeEEEEcCCCcEEEE
Q 021036 299 VSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 299 ~~v~~v~~sp~~~~l~~ 315 (318)
..|..+..+.+|++|++
T Consensus 604 ~aIk~idvta~Gk~ila 620 (776)
T COG5167 604 DAIKHIDVTANGKHILA 620 (776)
T ss_pred cceeeeEeecCCcEEEE
Confidence 47888888888887543
|
|
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=89.62 E-value=2.5 Score=38.86 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=26.2
Q ss_pred CCcEEEEEeCCCcEEEEECCCcceeeeeccc
Q 021036 146 PQVLLVTGSSDGSVRIWDGYIQELQKSAEAH 176 (318)
Q Consensus 146 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 176 (318)
+..+|++.+.|+++|+||+.+++++......
T Consensus 229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 229 DDTFLFTLSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp TTTEEEEEETTSEEEEEETTTTCEEEEEETT
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeccc
Confidence 5679999999999999999999997665433
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=89.57 E-value=14 Score=32.49 Aligned_cols=102 Identities=5% Similarity=-0.061 Sum_probs=57.6
Q ss_pred ceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCe-ee--Eeeeeec--ccCceeEEEEcCCCCEEEEecCCCcEE
Q 021036 193 PISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNK-FD--KVGSYNA--HDQVVTGLAWAFDGCCLYSCSQDNFVR 267 (318)
Q Consensus 193 ~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~-~~--~~~~~~~--h~~~v~~~~~~~~~~~l~s~~~d~~v~ 267 (318)
.++.+.+. +++.+++++ ..|.+..= ...++ ++ ....... -...++++.|.+++..+++ +.+|.+.
T Consensus 282 ~l~~v~~~-----~dg~l~l~g-~~G~l~~S---~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~ 351 (398)
T PLN00033 282 RIQNMGWR-----ADGGLWLLT-RGGGLYVS---KGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAA-GGSGILL 351 (398)
T ss_pred ceeeeeEc-----CCCCEEEEe-CCceEEEe---cCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEE-ECCCcEE
Confidence 67788887 788877766 45665542 22221 10 1111111 1235888999988876555 4677766
Q ss_pred EEEecCCceeeeec-CCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 268 SWIFHGNSLSQVSI-PTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 268 iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
... ..++..+... ... -...++.+.|.++++.+++|.
T Consensus 352 ~s~-D~G~tW~~~~~~~~------------~~~~ly~v~f~~~~~g~~~G~ 389 (398)
T PLN00033 352 RST-DGGKSWKRDKGADN------------IAANLYSVKFFDDKKGFVLGN 389 (398)
T ss_pred EeC-CCCcceeEccccCC------------CCcceeEEEEcCCCceEEEeC
Confidence 553 3333322211 111 113678999988888887764
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.10 E-value=0.23 Score=46.60 Aligned_cols=125 Identities=15% Similarity=0.148 Sum_probs=72.7
Q ss_pred eccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECC--CcceeeeecccccccccceeeeeecccceeEEEEee
Q 021036 124 FQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGY--IQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLIL 201 (318)
Q Consensus 124 ~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 201 (318)
.++..+.|-.+.|. + ...+.+. -.-|.+.+||+. .|+....+..+.. ......+.-+.|.+
T Consensus 128 ~kgf~G~v~dl~fa-h--~~~pk~~-----~~vg~lfVy~vd~l~G~iq~~l~v~~~---------~p~gs~~~~V~wcp 190 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFA-H--TKCPKGR-----RLVGELFVYDVDVLQGEIQPQLEVTPI---------TPYGSDPQLVSWCP 190 (1283)
T ss_pred HhcCCCCccccccc-c--cCChHHH-----HHhhhhheeehHhhccccccceEEeec---------CcCCCCcceeeecc
Confidence 45667788888881 1 1123332 233788999886 4444333322211 11112233444430
Q ss_pred ccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEE-----------EEcCCCCEEEEecCCCcEEEEE
Q 021036 202 PVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGL-----------AWAFDGCCLYSCSQDNFVRSWI 270 (318)
Q Consensus 202 ~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~-----------~~~~~~~~l~s~~~d~~v~iwd 270 (318)
. -++..++..+..++.|++..++.... .-+.+|...+..+ ..+|||+.++++..||.++.|.
T Consensus 191 -~-~~~~~~ic~~~~~~~i~lL~~~ra~~-----~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Q 263 (1283)
T KOG1916|consen 191 -I-AVNKVYICYGLKGGEIRLLNINRALR-----SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQ 263 (1283)
T ss_pred -c-ccccceeeeccCCCceeEeeechHHH-----HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceee
Confidence 0 04556777788899999876553322 1234466555543 3689999999999999999997
Q ss_pred ec
Q 021036 271 FH 272 (318)
Q Consensus 271 ~~ 272 (318)
+.
T Consensus 264 iy 265 (1283)
T KOG1916|consen 264 IY 265 (1283)
T ss_pred ee
Confidence 64
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=88.95 E-value=9.4 Score=34.14 Aligned_cols=149 Identities=12% Similarity=0.034 Sum_probs=80.6
Q ss_pred EEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCC
Q 021036 87 LAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYI 166 (318)
Q Consensus 87 l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 166 (318)
+..|+....++--|++.| +.+..+.-|.+. -+.|.|..-...-....-+.|-.+..|.-.|.+.
T Consensus 483 ~~dg~~~~kLykmDIErG--------------kvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~ 546 (776)
T COG5167 483 YLDGGERDKLYKMDIERG--------------KVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRA 546 (776)
T ss_pred EecCCCcccceeeecccc--------------eeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccc
Confidence 344556666777777774 456667666554 4566443211000111233444555665556653
Q ss_pred cc-eeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCce
Q 021036 167 QE-LQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVV 245 (318)
Q Consensus 167 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v 245 (318)
.. .+....... .......++..- -...++|+++..|.|++|| .-..+ ....+.+-...|
T Consensus 547 ~gNKi~v~esKd----------Y~tKn~Fss~~t------TesGyIa~as~kGDirLyD--Rig~r--AKtalP~lG~aI 606 (776)
T COG5167 547 RGNKIKVVESKD----------YKTKNKFSSGMT------TESGYIAAASRKGDIRLYD--RIGKR--AKTALPGLGDAI 606 (776)
T ss_pred cCCceeeeeehh----------cccccccccccc------ccCceEEEecCCCceeeeh--hhcch--hhhcCcccccce
Confidence 22 111111100 001112233332 2456899999999999995 22211 222355667789
Q ss_pred eEEEEcCCCCEEEEecCCCcEEEEEec
Q 021036 246 TGLAWAFDGCCLYSCSQDNFVRSWIFH 272 (318)
Q Consensus 246 ~~~~~~~~~~~l~s~~~d~~v~iwd~~ 272 (318)
-.+..+.+|.++++.+. ..+.+-|++
T Consensus 607 k~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 607 KHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred eeeEeecCCcEEEEeec-ceEEEEecc
Confidence 99999999997765553 467777765
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=88.94 E-value=16 Score=32.26 Aligned_cols=63 Identities=16% Similarity=0.051 Sum_probs=30.3
Q ss_pred cceeEEEEeeccCCCCceEEEEEe-CCCcEEEeeeccCCCeeeEeeeee-c---------------ccCceeEEEEcCCC
Q 021036 192 VPISVLSLILPVQSPRLMLLAVGK-GSGSFDLWKCDISCNKFDKVGSYN-A---------------HDQVVTGLAWAFDG 254 (318)
Q Consensus 192 ~~v~~l~~~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~-~---------------h~~~v~~~~~~~~~ 254 (318)
.-|+.|.+| .|.++|..++ ..|.|+.||+.-. ..++.+.+.. + -.+...-|..|.||
T Consensus 312 ~LitDI~iS-----lDDrfLYvs~W~~GdvrqYDISDP-~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DG 385 (461)
T PF05694_consen 312 PLITDILIS-----LDDRFLYVSNWLHGDVRQYDISDP-FNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDG 385 (461)
T ss_dssp -----EEE------TTS-EEEEEETTTTEEEEEE-SST-TS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTS
T ss_pred CceEeEEEc-----cCCCEEEEEcccCCcEEEEecCCC-CCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCC
Confidence 357889998 7888777766 6899999965321 2223333322 1 01233567788888
Q ss_pred CEEEEe
Q 021036 255 CCLYSC 260 (318)
Q Consensus 255 ~~l~s~ 260 (318)
+.|...
T Consensus 386 kRlYvT 391 (461)
T PF05694_consen 386 KRLYVT 391 (461)
T ss_dssp SEEEEE
T ss_pred eEEEEE
Confidence 876544
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=88.90 E-value=1.9 Score=39.64 Aligned_cols=69 Identities=20% Similarity=0.245 Sum_probs=41.3
Q ss_pred CceEEEEEeCCCcEEEeeecc---CCCeeeEeeeeecc--------------------cCceeEEEEcC----CCCEEEE
Q 021036 207 RLMLLAVGKGSGSFDLWKCDI---SCNKFDKVGSYNAH--------------------DQVVTGLAWAF----DGCCLYS 259 (318)
Q Consensus 207 ~~~~l~~~~~dg~i~vw~~~~---~~~~~~~~~~~~~h--------------------~~~v~~~~~~~----~~~~l~s 259 (318)
+...++.+..||.+.....+. ....+.... +..+ ...+..++.+. +..++++
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~-~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEEL-FNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE-----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEE-eCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 567788888899888876543 222222111 1111 13345566666 5679999
Q ss_pred ecCCCcEEEEEecCCce
Q 021036 260 CSQDNFVRSWIFHGNSL 276 (318)
Q Consensus 260 ~~~d~~v~iwd~~~~~~ 276 (318)
.+.|+++|+||+.++++
T Consensus 236 l~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQC 252 (547)
T ss_dssp EETTSEEEEEETTTTCE
T ss_pred EeCCCeEEEEECCCCeE
Confidence 99999999999999877
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.82 E-value=7.3 Score=38.76 Aligned_cols=85 Identities=15% Similarity=0.156 Sum_probs=50.2
Q ss_pred cccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECC----Cc---ceeeeeccccccc-cc---ceeeeeecccceeE
Q 021036 128 NSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGY----IQ---ELQKSAEAHCVPF-SL---LKEVVTVNTVPISV 196 (318)
Q Consensus 128 ~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~----~~---~~~~~~~~~~~~~-~~---~~~~~~~~~~~v~~ 196 (318)
...|+|+.+ ..+|+.|++|- || .+|.+. .+ +....+....... .+ +-.+...+..+|..
T Consensus 178 g~~V~~I~~-------t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~q 247 (1311)
T KOG1900|consen 178 GVSVNCITY-------TENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQ 247 (1311)
T ss_pred CceEEEEEe-------ccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCccee
Confidence 457889998 88998877765 45 445432 11 1111111000000 00 00111245668999
Q ss_pred EEEeeccCCCCceEEEEEeCCCcEEEeeecc
Q 021036 197 LSLILPVQSPRLMLLAVGKGSGSFDLWKCDI 227 (318)
Q Consensus 197 l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 227 (318)
+.++ ..-..+.+-+..|+|.+|++..
T Consensus 248 i~ID-----~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 248 ITID-----NSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eEec-----cccceeeeeccCceEEEEEccC
Confidence 9998 6778899999999999997643
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.80 E-value=6 Score=39.32 Aligned_cols=75 Identities=15% Similarity=0.215 Sum_probs=49.5
Q ss_pred ccceeEEEEeeccCCCCceEEEEEeCCCcEEEeee--ccCCCe----eeEe--------------eeee-cccCceeEEE
Q 021036 191 TVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKC--DISCNK----FDKV--------------GSYN-AHDQVVTGLA 249 (318)
Q Consensus 191 ~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~--~~~~~~----~~~~--------------~~~~-~h~~~v~~~~ 249 (318)
+..|+++... .+|+.|++|- || .+|.+ ....+- +..+ -.+. .+..+|..++
T Consensus 178 g~~V~~I~~t-----~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ 249 (1311)
T KOG1900|consen 178 GVSVNCITYT-----ENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQIT 249 (1311)
T ss_pred CceEEEEEec-----cCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeE
Confidence 5567788866 7888887776 55 44432 111110 0000 1122 4567899999
Q ss_pred EcCCCCEEEEecCCCcEEEEEecC
Q 021036 250 WAFDGCCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 250 ~~~~~~~l~s~~~d~~v~iwd~~~ 273 (318)
.+..-..+.+-++.|+|..||+..
T Consensus 250 ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 250 IDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eccccceeeeeccCceEEEEEccC
Confidence 988777899999999999999976
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=88.34 E-value=7.6 Score=27.96 Aligned_cols=110 Identities=13% Similarity=0.069 Sum_probs=59.5
Q ss_pred CCCcEEEEEeCCCcEEEEECCCcce--------eeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeC
Q 021036 145 NPQVLLVTGSSDGSVRIWDGYIQEL--------QKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKG 216 (318)
Q Consensus 145 ~~~~~l~s~~~d~~v~iwd~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~ 216 (318)
.....|+.++.-|.|.|++...... +..+.. ...|++|+-..-....+.+.|+.|+
T Consensus 8 G~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi---------------n~~italaaG~l~~~~~~D~LliGt- 71 (136)
T PF14781_consen 8 GVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI---------------NQEITALAAGRLKPDDGRDCLLIGT- 71 (136)
T ss_pred CCceeEEEEecCCEEEEECCCccccccccccCceeEEEC---------------CCceEEEEEEecCCCCCcCEEEEec-
Confidence 3344688888889999998764321 122222 2256666654211113456777777
Q ss_pred CCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcC---CCCEEEEecCCCcEEEEEecCCc
Q 021036 217 SGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAF---DGCCLYSCSQDNFVRSWIFHGNS 275 (318)
Q Consensus 217 dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~s~~~d~~v~iwd~~~~~ 275 (318)
...+..||++....- . ++.-...|.++.+-. ...-++..+.+..|.-||....+
T Consensus 72 ~t~llaYDV~~N~d~--F---yke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e 128 (136)
T PF14781_consen 72 QTSLLAYDVENNSDL--F---YKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE 128 (136)
T ss_pred cceEEEEEcccCchh--h---hhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence 566888865433322 1 122335666666532 12234444446677777765543
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=88.33 E-value=14 Score=30.87 Aligned_cols=60 Identities=15% Similarity=0.123 Sum_probs=36.7
Q ss_pred ceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCC----CeeeEeeeeecccCceeEEEEcC--CCCEEEE
Q 021036 193 PISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISC----NKFDKVGSYNAHDQVVTGLAWAF--DGCCLYS 259 (318)
Q Consensus 193 ~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~----~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s 259 (318)
....++++ ++|.++++--..+.|..|+ ..+ ...+.+..-...-..+.++.+.+ +|.+.+.
T Consensus 187 ~s~g~~~D-----~~G~ly~~~~~~~aI~~w~--~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~ 252 (287)
T PF03022_consen 187 QSDGMAID-----PNGNLYFTDVEQNAIGCWD--PDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVL 252 (287)
T ss_dssp SECEEEEE-----TTTEEEEEECCCTEEEEEE--TTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEE
T ss_pred CCceEEEC-----CCCcEEEecCCCCeEEEEe--CCCCcCccchheeEEcCceeeccceeeeccccCceEEEE
Confidence 55678888 8999999999999999995 433 12222222111134667888888 6654443
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=88.21 E-value=7.8 Score=27.91 Aligned_cols=113 Identities=17% Similarity=0.069 Sum_probs=64.8
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEE
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWD 163 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd 163 (318)
...|++++.-|+|.|++.......... ....++.+ .-...|++|+--|+.+ ..+.+.|+.|+. ..+..||
T Consensus 10 ~pcL~~aT~~gKV~IH~ph~~~~~~~~------~~~~i~~L-Nin~~italaaG~l~~--~~~~D~LliGt~-t~llaYD 79 (136)
T PF14781_consen 10 HPCLACATTGGKVFIHNPHERGQRTGR------QDSDISFL-NINQEITALAAGRLKP--DDGRDCLLIGTQ-TSLLAYD 79 (136)
T ss_pred ceeEEEEecCCEEEEECCCcccccccc------ccCceeEE-ECCCceEEEEEEecCC--CCCcCEEEEecc-ceEEEEE
Confidence 367888888999999987643211000 01222333 2356788888877765 334567777765 5899999
Q ss_pred CCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEe
Q 021036 164 GYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLW 223 (318)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw 223 (318)
+.....+...+.+. .++++.+---.+ ....++++|+ +..|.-|
T Consensus 80 V~~N~d~Fyke~~D---------------Gvn~i~~g~~~~-~~~~l~ivGG-ncsi~Gf 122 (136)
T PF14781_consen 80 VENNSDLFYKEVPD---------------GVNAIVIGKLGD-IPSPLVIVGG-NCSIQGF 122 (136)
T ss_pred cccCchhhhhhCcc---------------ceeEEEEEecCC-CCCcEEEECc-eEEEEEe
Confidence 98765543322222 566666531111 1234444444 6666666
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=88.10 E-value=11 Score=29.60 Aligned_cols=115 Identities=17% Similarity=0.118 Sum_probs=63.9
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCC---C---c
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSD---G---S 158 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d---~---~ 158 (318)
..|+.+...+.|.+|++.+.+ .+++..+..- +.|..+.+ +..|++|+|-=.+ . .
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~------------~~~~~~F~Tv-~~V~~l~y-------~~~GDYlvTlE~k~~~~~~~f 88 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEE------------CPLLCTFSTV-GRVLQLVY-------SEAGDYLVTLEEKNKRSPVDF 88 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCC------------CceeEEEcch-hheeEEEe-------ccccceEEEEEeecCCccceE
Confidence 344444556789999998544 3455666553 78999999 8999999996332 2 5
Q ss_pred EEEE-ECCC----cceee-eecccc------ccccc-ceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeee
Q 021036 159 VRIW-DGYI----QELQK-SAEAHC------VPFSL-LKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKC 225 (318)
Q Consensus 159 v~iw-d~~~----~~~~~-~~~~~~------~~~~~-~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~ 225 (318)
+|+| +.+. .+.+. .+-+|. .+... +.-+.-.-..++.+++.. |-.|++ +.|+ ++++.+|.+
T Consensus 89 vR~Y~NWr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC----~~tG~L-lVg~-~~~l~lf~l 162 (215)
T PF14761_consen 89 VRAYFNWRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACC----PVTGNL-LVGC-GNKLVLFTL 162 (215)
T ss_pred EEEEEEhhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEec----CCCCCE-EEEc-CCEEEEEEE
Confidence 6665 2221 12222 111211 00010 111122224467788888 234554 4444 678899954
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.62 E-value=19 Score=31.78 Aligned_cols=124 Identities=13% Similarity=0.130 Sum_probs=77.8
Q ss_pred ccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCC
Q 021036 127 HNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSP 206 (318)
Q Consensus 127 h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~ 206 (318)
..++|.++.| +++.+.|++--.|++|.+++....+...... ++. ......|...+|. .
T Consensus 65 d~G~I~SIkF-------SlDnkilAVQR~~~~v~f~nf~~d~~~l~~~-~~c---------k~k~~~IlGF~W~-----~ 122 (657)
T KOG2377|consen 65 DKGEIKSIKF-------SLDNKILAVQRTSKTVDFCNFIPDNSQLEYT-QEC---------KTKNANILGFCWT-----S 122 (657)
T ss_pred CCCceeEEEe-------ccCcceEEEEecCceEEEEecCCCchhhHHH-HHh---------ccCcceeEEEEEe-----c
Confidence 4569999999 9999999999999999999885433222211 110 1223357778886 3
Q ss_pred CceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCE--EEEecCCCcEEEEEecCCcee
Q 021036 207 RLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCC--LYSCSQDNFVRSWIFHGNSLS 277 (318)
Q Consensus 207 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--l~s~~~d~~v~iwd~~~~~~~ 277 (318)
+ .-+|.-...| +.+|..+.... .+...+.|...|.-..|.++-+. |+++-..+++.=+-++++...
T Consensus 123 s-~e~A~i~~~G-~e~y~v~pekr---slRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~v~ 190 (657)
T KOG2377|consen 123 S-TEIAFITDQG-IEFYQVLPEKR---SLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGTMS 190 (657)
T ss_pred C-eeEEEEecCC-eEEEEEchhhh---hhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeeceee
Confidence 3 5555555333 67775554433 33445567778888889998763 333335556666666654443
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=87.39 E-value=3.1 Score=23.23 Aligned_cols=31 Identities=26% Similarity=0.256 Sum_probs=23.7
Q ss_pred ccEEEEEeeeecCCCCC-CC--cEEEEEeCCCcEEEEECCC
Q 021036 129 SWITSISLAVLSSDSSN-PQ--VLLVTGSSDGSVRIWDGYI 166 (318)
Q Consensus 129 ~~v~~~~~~p~~~~~~~-~~--~~l~s~~~d~~v~iwd~~~ 166 (318)
+.|.++.| +| .+ ++|+-+-.-+.|.++|+++
T Consensus 1 GAvR~~kF-------sP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKF-------SPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEe-------CCCCCcccEEEEEccCCeEEEEEccc
Confidence 35788999 43 33 5777777779999999995
|
It contains a characteristic DLL sequence motif. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=86.91 E-value=16 Score=30.03 Aligned_cols=82 Identities=9% Similarity=-0.112 Sum_probs=52.8
Q ss_pred ceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEec
Q 021036 193 PISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFH 272 (318)
Q Consensus 193 ~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 272 (318)
..+.|+.. |+|..-++.-.+..|-.- |...+..+.+..-......-..+--+|.|+.-++....+.+..||..
T Consensus 190 gpyGi~at-----pdGsvwyaslagnaiari--dp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs 262 (353)
T COG4257 190 GPYGICAT-----PDGSVWYASLAGNAIARI--DPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPS 262 (353)
T ss_pred CCcceEEC-----CCCcEEEEeccccceEEc--ccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcc
Confidence 55678887 999988887666666665 55554433333223322333455557788888888788889888887
Q ss_pred CCceeeeec
Q 021036 273 GNSLSQVSI 281 (318)
Q Consensus 273 ~~~~~~~~~ 281 (318)
.........
T Consensus 263 ~~sW~eypL 271 (353)
T COG4257 263 VTSWIEYPL 271 (353)
T ss_pred cccceeeeC
Confidence 655554443
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=86.68 E-value=19 Score=30.74 Aligned_cols=117 Identities=14% Similarity=0.082 Sum_probs=55.5
Q ss_pred EEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceE
Q 021036 131 ITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLML 210 (318)
Q Consensus 131 v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~ 210 (318)
-+.|+| .|+|++|++ ...|.|++++ ..+.....+.... .+..........+++++++. .++.+
T Consensus 4 P~~~a~-------~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~-------~v~~~~~~gllgia~~p~f~-~n~~l 66 (331)
T PF07995_consen 4 PRSMAF-------LPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLP-------EVFADGERGLLGIAFHPDFA-SNGYL 66 (331)
T ss_dssp EEEEEE-------ETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-T-------TTBTSTTBSEEEEEE-TTCC-CC-EE
T ss_pred ceEEEE-------eCCCcEEEE-eCCceEEEEe-CCCcCcceecccc-------cccccccCCcccceeccccC-CCCEE
Confidence 467899 788877765 5599999999 3333311111000 11122344678889982221 23555
Q ss_pred EEEEeCC--------CcEEEeeeccCCCee---eEe-eeeec---ccCceeEEEEcCCCCEEEEecCCC
Q 021036 211 LAVGKGS--------GSFDLWKCDISCNKF---DKV-GSYNA---HDQVVTGLAWAFDGCCLYSCSQDN 264 (318)
Q Consensus 211 l~~~~~d--------g~i~vw~~~~~~~~~---~~~-~~~~~---h~~~v~~~~~~~~~~~l~s~~~d~ 264 (318)
.+..+.. ..|.-|.++...... +.+ ..+.. ....-..|.|.|||.+.++.+..+
T Consensus 67 Yv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~ 135 (331)
T PF07995_consen 67 YVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGG 135 (331)
T ss_dssp EEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TT
T ss_pred EEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCC
Confidence 4444422 234444333221111 111 11121 223346699999997666555443
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST) | Back alignment and domain information |
|---|
Probab=86.58 E-value=18 Score=30.37 Aligned_cols=40 Identities=10% Similarity=0.099 Sum_probs=34.0
Q ss_pred cEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeeccc
Q 021036 130 WITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAH 176 (318)
Q Consensus 130 ~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 176 (318)
-|++|.. ..+|++|+|+-.-.+|.+.|-.+|+.+..+.+.
T Consensus 145 HiNsV~~-------~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~ 184 (299)
T PF14269_consen 145 HINSVDK-------DDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGK 184 (299)
T ss_pred Eeeeeee-------cCCccEEEEecccCEEEEEECCCCcEEEEeCCC
Confidence 3677777 788899999988899999999999999888665
|
|
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=86.38 E-value=3.9 Score=27.16 Aligned_cols=42 Identities=12% Similarity=-0.022 Sum_probs=26.7
Q ss_pred ecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 260 CSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 260 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
+..+|.+..||..+++...+.-.-. --++|+.+||+.+++.+
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~L~---------------fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDGLY---------------FPNGVALSPDESFVLVA 74 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEEES---------------SEEEEEE-TTSSEEEEE
T ss_pred CCCCcCEEEEECCCCeEEEehhCCC---------------ccCeEEEcCCCCEEEEE
Confidence 3456788888988877654432222 23899999999988765
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=85.97 E-value=34 Score=32.99 Aligned_cols=22 Identities=5% Similarity=-0.123 Sum_probs=19.1
Q ss_pred EEEEecCCCcEEEEEecCCcee
Q 021036 256 CLYSCSQDNFVRSWIFHGNSLS 277 (318)
Q Consensus 256 ~l~s~~~d~~v~iwd~~~~~~~ 277 (318)
.++.++.+|.+++.|.++++..
T Consensus 461 ~v~~~~K~G~~~vlDr~tG~~l 482 (764)
T TIGR03074 461 ALVAPTKQGQIYVLDRRTGEPI 482 (764)
T ss_pred EEEEECCCCEEEEEECCCCCEE
Confidence 7889999999999999987654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=85.77 E-value=9.5 Score=30.34 Aligned_cols=71 Identities=15% Similarity=0.079 Sum_probs=47.3
Q ss_pred CCceEEEEEeCCCcEEEeeeccCCCeeeEee----e-ee-------cccCceeEEEEcCCCCEEEEecCCCcEEEEEecC
Q 021036 206 PRLMLLAVGKGSGSFDLWKCDISCNKFDKVG----S-YN-------AHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 206 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~----~-~~-------~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 273 (318)
..+.++++-+.+|.+++|| +...+..... . +. .....|..+.++.+|.-+++-+ +|..+.|+..-
T Consensus 20 ~~~~~Ll~iT~~G~l~vWn--l~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 20 CNGSYLLAITSSGLLYVWN--LKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred eCCCEEEEEeCCCeEEEEE--CCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 4577888888999999995 4444421100 0 11 2456788888998888777665 57889998776
Q ss_pred Cceeee
Q 021036 274 NSLSQV 279 (318)
Q Consensus 274 ~~~~~~ 279 (318)
+....+
T Consensus 97 ~~W~~v 102 (219)
T PF07569_consen 97 GCWIRV 102 (219)
T ss_pred ceeEEe
Confidence 555443
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=85.77 E-value=20 Score=31.67 Aligned_cols=48 Identities=19% Similarity=-0.021 Sum_probs=38.2
Q ss_pred eccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeeccccc
Q 021036 124 FQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCV 178 (318)
Q Consensus 124 ~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~ 178 (318)
+......+.++.. +|.+++.++...=|+|.++|+.++..+...++...
T Consensus 303 l~D~~R~~~~i~~-------sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRd 350 (415)
T PF14655_consen 303 LPDSKREGESICL-------SPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRD 350 (415)
T ss_pred eccCCceEEEEEE-------CCCCCEEEEEcCCCcEEEEECCCChhhhhhccCcc
Confidence 3344556888999 88888888887779999999999988887776654
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.68 E-value=25 Score=31.77 Aligned_cols=27 Identities=11% Similarity=-0.082 Sum_probs=20.4
Q ss_pred cEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEE
Q 021036 130 WITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWD 163 (318)
Q Consensus 130 ~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd 163 (318)
.|..+.. ++.|..++.++.+|.+.++=
T Consensus 105 eV~~vl~-------s~~GS~VaL~G~~Gi~vMeL 131 (741)
T KOG4460|consen 105 EVYQVLL-------SPTGSHVALIGIKGLMVMEL 131 (741)
T ss_pred EEEEEEe-------cCCCceEEEecCCeeEEEEc
Confidence 4666777 78888888888888766553
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=85.31 E-value=23 Score=30.34 Aligned_cols=104 Identities=10% Similarity=-0.016 Sum_probs=56.2
Q ss_pred cceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCC-CeeeEeeee-ecccCceeEEEEcCCCCEEEEecCCCcEEEE
Q 021036 192 VPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISC-NKFDKVGSY-NAHDQVVTGLAWAFDGCCLYSCSQDNFVRSW 269 (318)
Q Consensus 192 ~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~-~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iw 269 (318)
..++.+.+. +++..++++. .|.+.+= .... ..++.+..- ..-...+.++.+.|++..+++ +.+|.+. .
T Consensus 215 ~~l~~i~~~-----~~g~~~~vg~-~G~~~~~--s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~-~ 284 (334)
T PRK13684 215 RRLQSMGFQ-----PDGNLWMLAR-GGQIRFN--DPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLL-V 284 (334)
T ss_pred ccceeeeEc-----CCCCEEEEec-CCEEEEc--cCCCCCccccccCCccccccceeeEEEcCCCCEEEE-cCCCeEE-E
Confidence 367888888 7888777664 6766541 1112 233222111 011235778899998875554 4567654 3
Q ss_pred EecCCceeeeecC-CCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 270 IFHGNSLSQVSIP-TNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 270 d~~~~~~~~~~~~-~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
....++..+.... ... ....+.+.|..+++.+++|.
T Consensus 285 S~d~G~tW~~~~~~~~~------------~~~~~~~~~~~~~~~~~~G~ 321 (334)
T PRK13684 285 SKDGGKTWEKDPVGEEV------------PSNFYKIVFLDPEKGFVLGQ 321 (334)
T ss_pred eCCCCCCCeECCcCCCC------------CcceEEEEEeCCCceEEECC
Confidence 3443333222111 110 12567888888778887764
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=85.28 E-value=24 Score=30.64 Aligned_cols=120 Identities=18% Similarity=0.073 Sum_probs=68.1
Q ss_pred cEEEEEeeeecCCCCCCC-cEEEEEeCCCcEEEEECCC---cc----eeeeecccccccccceeeeeecccceeEEEEee
Q 021036 130 WITSISLAVLSSDSSNPQ-VLLVTGSSDGSVRIWDGYI---QE----LQKSAEAHCVPFSLLKEVVTVNTVPISVLSLIL 201 (318)
Q Consensus 130 ~v~~~~~~p~~~~~~~~~-~~l~s~~~d~~v~iwd~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 201 (318)
.++.++.- .+ ..+| -+.+....+|.+..|.+.. +. .++.|.. ...+..+..+
T Consensus 157 e~yGlcly--~~--~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~---------------~sQ~EGCVVD- 216 (381)
T PF02333_consen 157 EPYGLCLY--RS--PSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV---------------GSQPEGCVVD- 216 (381)
T ss_dssp SEEEEEEE--E---TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE----------------SS-EEEEEEE-
T ss_pred cceeeEEe--ec--CCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC---------------CCcceEEEEe-
Confidence 46667651 11 2234 4667778889888887752 22 2333332 2267788888
Q ss_pred ccCCCCceEEEEEeCCCcEEEeeeccCCCe-eeEeeeeec--ccCceeEEEEc--CCCC--EEEEecCCCcEEEEEecC
Q 021036 202 PVQSPRLMLLAVGKGSGSFDLWKCDISCNK-FDKVGSYNA--HDQVVTGLAWA--FDGC--CLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 202 ~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~-~~~~~~~~~--h~~~v~~~~~~--~~~~--~l~s~~~d~~v~iwd~~~ 273 (318)
.....|+.+-.+--|.-|+.+..... ...+....+ ....|..|+.- .+++ +|++.-.+++..+|+...
T Consensus 217 ----De~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 217 ----DETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp ----TTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred ----cccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 67778888888876766655544332 223333222 34677777764 3443 455555677899999875
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PF14779 BBS1: Ciliary BBSome complex subunit 1 | Back alignment and domain information |
|---|
Probab=82.62 E-value=16 Score=29.69 Aligned_cols=51 Identities=22% Similarity=0.243 Sum_probs=38.9
Q ss_pred ccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccc
Q 021036 127 HNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHC 177 (318)
Q Consensus 127 h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 177 (318)
+...|+|++-.+.+......-..|+.|.++|.|.|.|..............
T Consensus 175 ~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lps 225 (257)
T PF14779_consen 175 RQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPS 225 (257)
T ss_pred cCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCC
Confidence 346799999888776544455789999999999999998777666655433
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=82.51 E-value=15 Score=27.88 Aligned_cols=36 Identities=17% Similarity=0.162 Sum_probs=26.5
Q ss_pred cEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCC
Q 021036 130 WITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYI 166 (318)
Q Consensus 130 ~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 166 (318)
.|.+++|.|.-.. ...+-+|++.+.++.|.||.-..
T Consensus 87 ~vv~~aWSP~Gl~-~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLG-PNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCC-CCCceEEEEEcCCCeEEEEecCC
Confidence 7899999665432 12345788889999999998664
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=81.55 E-value=27 Score=28.45 Aligned_cols=115 Identities=16% Similarity=0.014 Sum_probs=64.4
Q ss_pred cEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEE-CCCcceee-eecccccccccceeeeeecccceeEEEEeeccCCCC
Q 021036 130 WITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWD-GYIQELQK-SAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPR 207 (318)
Q Consensus 130 ~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~ 207 (318)
.+....| .+++...+....+...+++. ...++... ...... ....|..+.++ ||
T Consensus 67 ~l~~PS~-------d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~------------~~~~I~~l~vS-----pD 122 (253)
T PF10647_consen 67 SLTRPSW-------DPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPG------------LRGRITALRVS-----PD 122 (253)
T ss_pred ccccccc-------cCCCCEEEEEcCCCceEEEEecCCCcceeEEecccc------------cCCceEEEEEC-----CC
Confidence 6777788 77777777766666666664 23332211 111111 01178999999 99
Q ss_pred ceEEEEEe---CCCcEEEeeeccC-CCee----eEeeeeecccCceeEEEEcCCCCEEEEecCC-CcEEE
Q 021036 208 LMLLAVGK---GSGSFDLWKCDIS-CNKF----DKVGSYNAHDQVVTGLAWAFDGCCLYSCSQD-NFVRS 268 (318)
Q Consensus 208 ~~~l~~~~---~dg~i~vw~~~~~-~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-~~v~i 268 (318)
|..+|.-. .++.|.+=-+... .+.. .+..........+..++|.+++.+++.+... +.+..
T Consensus 123 G~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 123 GTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVR 192 (253)
T ss_pred CcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeE
Confidence 98777665 3466666432211 1200 1111112234678999999999876655443 33443
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=81.54 E-value=41 Score=30.42 Aligned_cols=70 Identities=10% Similarity=0.035 Sum_probs=40.0
Q ss_pred CceEEEEEeCCC----cEEEeeeccCCCeeeEeeeeec---ccCceeEEEEcCCCCEEEEecCC--------------Cc
Q 021036 207 RLMLLAVGKGSG----SFDLWKCDISCNKFDKVGSYNA---HDQVVTGLAWAFDGCCLYSCSQD--------------NF 265 (318)
Q Consensus 207 ~~~~l~~~~~dg----~i~vw~~~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~s~~~d--------------~~ 265 (318)
++++++.++.++ .+.+| |..+.+|..+..... ......++. -++++++.|+.+ ..
T Consensus 328 ~gkiyviGG~~g~~~~dv~~y--D~~t~~W~~~~~~g~~P~~R~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~nd 403 (470)
T PLN02193 328 QGKVWVVYGFNGCEVDDVHYY--DPVQDKWTQVETFGVRPSERSVFASAA--VGKHIVIFGGEIAMDPLAHVGPGQLTDG 403 (470)
T ss_pred CCcEEEEECCCCCccCceEEE--ECCCCEEEEeccCCCCCCCcceeEEEE--ECCEEEEECCccCCccccccCccceecc
Confidence 466777776553 46666 677777766543211 111112222 246677777753 24
Q ss_pred EEEEEecCCceeeee
Q 021036 266 VRSWIFHGNSLSQVS 280 (318)
Q Consensus 266 v~iwd~~~~~~~~~~ 280 (318)
+.+||+.+.....+.
T Consensus 404 v~~~D~~t~~W~~~~ 418 (470)
T PLN02193 404 TFALDTETLQWERLD 418 (470)
T ss_pred EEEEEcCcCEEEEcc
Confidence 788888877766544
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.50 E-value=38 Score=30.07 Aligned_cols=75 Identities=11% Similarity=0.154 Sum_probs=47.8
Q ss_pred cccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEE
Q 021036 190 NTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSW 269 (318)
Q Consensus 190 ~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iw 269 (318)
..++|.++.|+ +|.+.+|+--.+..|.+++.-....+.+...+.+..+..|.+..|+... -+|.-... -+-+|
T Consensus 65 d~G~I~SIkFS-----lDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~-e~A~i~~~-G~e~y 137 (657)
T KOG2377|consen 65 DKGEIKSIKFS-----LDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSST-EIAFITDQ-GIEFY 137 (657)
T ss_pred CCCceeEEEec-----cCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCe-eEEEEecC-CeEEE
Confidence 35589999999 9999999999999999995422222212223334445568888888663 34433332 24455
Q ss_pred Ee
Q 021036 270 IF 271 (318)
Q Consensus 270 d~ 271 (318)
..
T Consensus 138 ~v 139 (657)
T KOG2377|consen 138 QV 139 (657)
T ss_pred EE
Confidence 44
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=81.29 E-value=13 Score=28.28 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=25.2
Q ss_pred ceeEEEEcCCC------CEEEEecCCCcEEEEEecC
Q 021036 244 VVTGLAWAFDG------CCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 244 ~v~~~~~~~~~------~~l~s~~~d~~v~iwd~~~ 273 (318)
.+.+++|||.| .+|++...++.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 67899999953 3889999999999998764
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >smart00564 PQQ beta-propeller repeat | Back alignment and domain information |
|---|
Probab=80.65 E-value=4.7 Score=20.53 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=20.3
Q ss_pred EEEEEeCCCcEEEEECCCcceeee
Q 021036 149 LLVTGSSDGSVRIWDGYIQELQKS 172 (318)
Q Consensus 149 ~l~s~~~d~~v~iwd~~~~~~~~~ 172 (318)
.++.++.++.+..+|..+|+....
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEE
Confidence 577888999999999999887654
|
Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases. |
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=80.50 E-value=6.9 Score=20.93 Aligned_cols=29 Identities=21% Similarity=0.279 Sum_probs=18.0
Q ss_pred ccCceeEEEEcCCCCEEEEec-CC--CcEEEE
Q 021036 241 HDQVVTGLAWAFDGCCLYSCS-QD--NFVRSW 269 (318)
Q Consensus 241 h~~~v~~~~~~~~~~~l~s~~-~d--~~v~iw 269 (318)
....-....|+|||+.|+-.+ .+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344567789999999776544 44 555554
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=80.21 E-value=7.4 Score=21.05 Aligned_cols=27 Identities=30% Similarity=0.159 Sum_probs=18.4
Q ss_pred CCCCEEEE-ecCCCcEEEEEecCCceee
Q 021036 252 FDGCCLYS-CSQDNFVRSWIFHGNSLSQ 278 (318)
Q Consensus 252 ~~~~~l~s-~~~d~~v~iwd~~~~~~~~ 278 (318)
|++++|++ ...+++|.++|..+.....
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~ 28 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIA 28 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEE
Confidence 56665554 4467899999997765543
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 318 | |||
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.98 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.98 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.98 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.98 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.97 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.97 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.97 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.97 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.97 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.97 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.97 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.97 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.97 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.97 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.97 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.97 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.97 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.97 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.97 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.97 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.97 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.97 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.97 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.97 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.97 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.97 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.97 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.97 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.97 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.97 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.97 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.97 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.97 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.97 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.97 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.96 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.96 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.96 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.96 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.96 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.96 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.96 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.96 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.96 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.96 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.96 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.96 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.96 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.96 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.96 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.96 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.96 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.96 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.96 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.95 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.95 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.95 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.95 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.95 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.95 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.95 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.95 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.95 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.95 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.95 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.95 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.95 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.95 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.95 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.95 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.95 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.95 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.94 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.94 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.94 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.94 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.94 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.94 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.93 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.93 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.93 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.93 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.93 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.92 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.92 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.92 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.91 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.9 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.89 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.88 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.85 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.85 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.85 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.84 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.84 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.83 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.82 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.82 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.81 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.81 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.8 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.79 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.79 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.79 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.79 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.78 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.77 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.76 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.76 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.75 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.75 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.75 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.74 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.74 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.73 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.72 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.71 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.71 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.68 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.67 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.66 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.66 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.65 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.62 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.61 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.6 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.6 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.6 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.59 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.58 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.55 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.55 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.53 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.53 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.52 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.51 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.48 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.47 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.47 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.47 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.45 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.43 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.43 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.42 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.41 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.39 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.39 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.39 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.37 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.35 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.33 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.33 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.32 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.32 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.3 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.28 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.27 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.26 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.25 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.23 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.2 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.2 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.18 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.18 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.13 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.13 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.1 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.08 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.07 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.07 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.06 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.03 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.03 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.03 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.99 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.99 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 98.98 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.96 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.93 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.87 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.82 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.81 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.75 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.74 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.71 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.67 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.65 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.63 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.63 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.61 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.6 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.59 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.59 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.59 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.52 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.52 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.5 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.48 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.42 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.37 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.37 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.36 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.35 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.35 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.33 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.32 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.29 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.24 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.23 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.21 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.2 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.2 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.14 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.09 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.06 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.05 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.02 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.01 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 97.95 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.94 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.93 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 97.93 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.9 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.9 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.89 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.88 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 97.86 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.83 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.82 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.74 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.68 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.68 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 97.67 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.67 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.65 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.55 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 97.55 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 97.52 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 97.5 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.49 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 97.49 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.46 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.45 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.44 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.44 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.43 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.26 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.18 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.18 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.13 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.12 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.1 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.03 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 96.97 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 96.96 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.96 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 96.91 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 96.91 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 96.91 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 96.89 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.87 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 96.8 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 96.77 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 96.77 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 96.69 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 96.62 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 96.53 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 96.52 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 96.48 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 96.46 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.42 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 96.36 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 96.34 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 96.33 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.32 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.31 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 96.21 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.18 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 96.09 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 96.02 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 95.84 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 95.74 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 95.53 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 95.47 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 95.45 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 95.41 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 95.38 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 95.21 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 94.66 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 93.77 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 93.7 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 93.68 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 93.66 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 93.61 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 93.12 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 93.08 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 91.51 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 90.76 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 90.62 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 89.83 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 89.58 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 89.5 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 89.19 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 88.47 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 88.44 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 85.07 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 84.72 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 81.31 | |
| 3zwu_A | 592 | Alkaline phosphatase PHOX; hydrolase, beta-propell | 80.65 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 80.51 |
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-37 Score=260.93 Aligned_cols=222 Identities=18% Similarity=0.180 Sum_probs=176.4
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEE
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVS 97 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~ 97 (318)
..+++|+.||+|++||+.+++.+........+|.+. +.+++|+|+ +++|++|+.||+|+
T Consensus 94 ~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~---V~~v~~spd------------------g~~l~sgs~d~~i~ 152 (344)
T 4gqb_B 94 RGILVASDSGAVELWELDENETLIVSKFCKYEHDDI---VSTVSVLSS------------------GTQAVSGSKDICIK 152 (344)
T ss_dssp TEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSC---EEEEEECTT------------------SSEEEEEETTSCEE
T ss_pred CeEEEEECCCEEEEEeccCCCceeEeeccccCCCCC---EEEEEECCC------------------CCEEEEEeCCCeEE
Confidence 568999999999999999988755544322233333 333555555 49999999999999
Q ss_pred EEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCC-cEEEEEeCCCcEEEEECCCcceeeeeccc
Q 021036 98 LWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQ-VLLVTGSSDGSVRIWDGYIQELQKSAEAH 176 (318)
Q Consensus 98 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 176 (318)
+||++++ +.+..+.+|.+.|++++| ++++ .+|++++.|++|++||+++++....+...
T Consensus 153 iwd~~~~--------------~~~~~~~~h~~~V~~~~~-------~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~ 211 (344)
T 4gqb_B 153 VWDLAQQ--------------VVLSSYRAHAAQVTCVAA-------SPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS 211 (344)
T ss_dssp EEETTTT--------------EEEEEECCCSSCEEEEEE-------CSSCTTEEEEEETTSCEEEEETTSSSCEEECC--
T ss_pred EEECCCC--------------cEEEEEcCcCCceEEEEe-------cCCCCCceeeeccccccccccccccceeeeeecc
Confidence 9999984 467889999999999999 6766 58899999999999999998877765432
Q ss_pred ccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCC-C
Q 021036 177 CVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDG-C 255 (318)
Q Consensus 177 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~ 255 (318)
. +...+.+++|+ |.++.+|++|+.||.|++| |.++++ ++.++.+|...|++++|+|++ +
T Consensus 212 ~------------~~~~~~~~~~~----p~~~~~l~sg~~dg~v~~w--d~~~~~--~~~~~~~h~~~v~~v~fsp~g~~ 271 (344)
T 4gqb_B 212 A------------PGYLPTSLAWH----PQQSEVFVFGDENGTVSLV--DTKSTS--CVLSSAVHSQCVTGLVFSPHSVP 271 (344)
T ss_dssp --------------CCCEEEEEEC----SSCTTEEEEEETTSEEEEE--ESCC----CCEEEECCSSCEEEEEECSSSSC
T ss_pred e------------eeccceeeeec----CCCCcceEEeccCCcEEEE--ECCCCc--EEEEEcCCCCCEEEEEEccCCCe
Confidence 2 33468899998 2356789999999999999 566665 677899999999999999997 5
Q ss_pred EEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCc-EEEEE
Q 021036 256 CLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNL-VVAMV 316 (318)
Q Consensus 256 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~l~~~ 316 (318)
+|++|+.|++|++||+.++++..+. +|.+.|++++|+|+++ +|+++
T Consensus 272 ~lasgs~D~~i~vwd~~~~~~~~~~---------------~H~~~V~~v~~sp~~~~llas~ 318 (344)
T 4gqb_B 272 FLASLSEDCSLAVLDSSLSELFRSQ---------------AHRDFVRDATWSPLNHSLLTTV 318 (344)
T ss_dssp CEEEEETTSCEEEECTTCCEEEEEC---------------CCSSCEEEEEECSSSTTEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEc---------------CCCCCEEEEEEeCCCCeEEEEE
Confidence 8999999999999999888765432 3667999999999886 56665
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-36 Score=255.22 Aligned_cols=239 Identities=21% Similarity=0.224 Sum_probs=189.4
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeeccccc------------------------CCCC
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLR------------------------LSSK 71 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~------------------------~~~~ 71 (318)
+...+++||.|+++++||+.+++....... .+|... +.+++|+|++. +..|
T Consensus 47 ~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l--~gh~~~---v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~ 121 (321)
T 3ow8_A 47 NSETVVTGSLDDLVKVWKWRDERLDLQWSL--EGHQLG---VVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAG 121 (321)
T ss_dssp --CEEEEEETTSCEEEEEEETTEEEEEEEE--CCCSSC---EEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred CCCEEEEEcCCCCEEEEECCCCCeeeeeee--ccCCCC---EEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCC
Confidence 345689999999999999977543222111 113322 22244443321 2345
Q ss_pred cccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEE
Q 021036 72 KYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLV 151 (318)
Q Consensus 72 ~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~ 151 (318)
...+.+++++|++++|++|+.||.|++|++++++ ....+..|...|.+++| ++++++|+
T Consensus 122 ~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~--------------~~~~~~~~~~~v~~~~~-------spdg~~la 180 (321)
T 3ow8_A 122 PVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK--------------KEYSLDTRGKFILSIAY-------SPDGKYLA 180 (321)
T ss_dssp TTCCCCEEECTTSSEEEEECTTSEEEEEETTTCS--------------EEEEEECSSSCEEEEEE-------CTTSSEEE
T ss_pred CccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCc--------------eeEEecCCCceEEEEEE-------CCCCCEEE
Confidence 6677888899999999999999999999988744 45567788899999999 89999999
Q ss_pred EEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCe
Q 021036 152 TGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNK 231 (318)
Q Consensus 152 s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~ 231 (318)
+|+.|+.|++||+++++.+..+..+. .+|.+++|+ |++.+|++|+.|+.|++| +.+..+
T Consensus 181 sg~~dg~i~iwd~~~~~~~~~~~~h~--------------~~v~~l~~s-----pd~~~l~s~s~dg~i~iw--d~~~~~ 239 (321)
T 3ow8_A 181 SGAIDGIINIFDIATGKLLHTLEGHA--------------MPIRSLTFS-----PDSQLLVTASDDGYIKIY--DVQHAN 239 (321)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCS--------------SCCCEEEEC-----TTSCEEEEECTTSCEEEE--ETTTCC
T ss_pred EEcCCCeEEEEECCCCcEEEEEcccC--------------CceeEEEEc-----CCCCEEEEEcCCCeEEEE--ECCCcc
Confidence 99999999999999998877776544 489999999 999999999999999999 555655
Q ss_pred eeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCc
Q 021036 232 FDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNL 311 (318)
Q Consensus 232 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 311 (318)
.+..+.+|...|.+++|+|++.+|++++.|++|++||+.++..... +.+|...|.+++|+|+++
T Consensus 240 --~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~--------------~~~h~~~v~~v~~s~~g~ 303 (321)
T 3ow8_A 240 --LAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHT--------------FFDHQDQVWGVKYNGNGS 303 (321)
T ss_dssp --EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE--------------ECCCSSCEEEEEECTTSS
T ss_pred --eeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEE--------------EcCCCCcEEEEEECCCCC
Confidence 5677889999999999999999999999999999999988765532 233566999999999999
Q ss_pred EEEEEe
Q 021036 312 VVAMVQ 317 (318)
Q Consensus 312 ~l~~~~ 317 (318)
+|+++.
T Consensus 304 ~l~s~~ 309 (321)
T 3ow8_A 304 KIVSVG 309 (321)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 999874
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-36 Score=262.60 Aligned_cols=236 Identities=15% Similarity=0.246 Sum_probs=197.4
Q ss_pred ccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeeccccc------------------------CCCCc
Q 021036 17 THPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLR------------------------LSSKK 72 (318)
Q Consensus 17 ~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~------------------------~~~~~ 72 (318)
...+++|+.|++|++||+.+++....+.. |.+. +.+++|+|++. +.+|.
T Consensus 120 ~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~----h~~~---V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~ 192 (410)
T 1vyh_C 120 FSVMVSASEDATIKVWDYETGDFERTLKG----HTDS---VQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHD 192 (410)
T ss_dssp SSEEEEEESSSCEEEEETTTCCCCEEECC----CSSC---EEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCS
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEEec----cCCc---EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCC
Confidence 34689999999999999999887665543 3333 33355555432 45788
Q ss_pred ccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEE
Q 021036 73 YPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVT 152 (318)
Q Consensus 73 ~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s 152 (318)
.+|.+++++|++++|++|+.|+.|++||+.++. .+..+.+|...|.++.| ++++.+|++
T Consensus 193 ~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~--------------~~~~~~~h~~~v~~~~~-------~~~g~~l~s 251 (410)
T 1vyh_C 193 HNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY--------------CVKTFTGHREWVRMVRP-------NQDGTLIAS 251 (410)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTCC--------------EEEEEECCSSCEEEEEE-------CTTSSEEEE
T ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc--------------EEEEEeCCCccEEEEEE-------CCCCCEEEE
Confidence 899999999999999999999999999999854 56778899999999999 899999999
Q ss_pred EeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCC--------------------ceEEE
Q 021036 153 GSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPR--------------------LMLLA 212 (318)
Q Consensus 153 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~--------------------~~~l~ 212 (318)
|+.|++|++||+.++++...+..|. ..|.+++|+ |+ +.+|+
T Consensus 252 ~s~D~~v~vwd~~~~~~~~~~~~h~--------------~~v~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~l~ 312 (410)
T 1vyh_C 252 CSNDQTVRVWVVATKECKAELREHR--------------HVVECISWA-----PESSYSSISEATGSETKKSGKPGPFLL 312 (410)
T ss_dssp EETTSCEEEEETTTCCEEEEECCCS--------------SCEEEEEEC-----CSCGGGGGGGCCSCC-------CCEEE
T ss_pred EcCCCeEEEEECCCCceeeEecCCC--------------ceEEEEEEc-----CcccccchhhhccccccccCCCCCEEE
Confidence 9999999999999988777665544 478999998 54 67999
Q ss_pred EEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccc
Q 021036 213 VGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCT 292 (318)
Q Consensus 213 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 292 (318)
+|+.|+.|++| |.+++. .+..+.+|...|.+++|+|+|++|++++.|++|++||+.++....
T Consensus 313 sgs~D~~i~iw--d~~~~~--~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~-------------- 374 (410)
T 1vyh_C 313 SGSRDKTIKMW--DVSTGM--CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK-------------- 374 (410)
T ss_dssp EEETTSEEEEE--ETTTTE--EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCE--------------
T ss_pred EEeCCCeEEEE--ECCCCc--eEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEE--------------
Confidence 99999999999 666766 677889999999999999999999999999999999998765432
Q ss_pred cCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 293 DLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 293 ~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
.+.+|...|++++|+|++.+|++|.
T Consensus 375 ~~~~h~~~v~~l~~~~~~~~l~sgs 399 (410)
T 1vyh_C 375 TLNAHEHFVTSLDFHKTAPYVVTGS 399 (410)
T ss_dssp EEECCSSCEEEEEECSSSSCEEEEE
T ss_pred EEcCCCCcEEEEEEcCCCCEEEEEe
Confidence 1223566899999999999999985
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-35 Score=252.69 Aligned_cols=239 Identities=16% Similarity=0.197 Sum_probs=191.4
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeeccccc----------------------------
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLR---------------------------- 67 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~---------------------------- 67 (318)
+...+++||.|+++++||..+++....+.. +... +.+++|+|++.
T Consensus 75 d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~----~~~~---v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~ 147 (354)
T 2pbi_B 75 DKRRIVSSSQDGKVIVWDSFTTNKEHAVTM----PCTW---VMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKK 147 (354)
T ss_dssp TSSEEEEEETTSEEEEEETTTCCEEEEEEC----SSSC---CCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGC
T ss_pred CCCEEEEEeCCCeEEEEECCCCCcceEEec----CCCC---EEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccc
Confidence 346789999999999999988776554443 2222 33466665432
Q ss_pred --CCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCC
Q 021036 68 --LSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSN 145 (318)
Q Consensus 68 --~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 145 (318)
+..|...|.++.+++++..|++++.||+|++||++++ +.+..+.+|...|.+++|.| ++
T Consensus 148 ~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~--------------~~~~~~~~h~~~v~~~~~~~-----~~ 208 (354)
T 2pbi_B 148 KSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESG--------------QLLQSFHGHGADVLCLDLAP-----SE 208 (354)
T ss_dssp EEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC--------------CEEEEEECCSSCEEEEEECC-----CS
T ss_pred eeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC--------------eEEEEEcCCCCCeEEEEEEe-----CC
Confidence 2347788999999999999999999999999999985 46678899999999999922 22
Q ss_pred CCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeee
Q 021036 146 PQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKC 225 (318)
Q Consensus 146 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~ 225 (318)
++++|++|+.||+|++||++++++...+..|. ..|++++|+ |++.+|++|+.|++|++|
T Consensus 209 ~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~--------------~~v~~v~~~-----p~~~~l~s~s~D~~v~lw-- 267 (354)
T 2pbi_B 209 TGNTFVSGGCDKKAMVWDMRSGQCVQAFETHE--------------SDVNSVRYY-----PSGDAFASGSDDATCRLY-- 267 (354)
T ss_dssp SCCEEEEEETTSCEEEEETTTCCEEEEECCCS--------------SCEEEEEEC-----TTSSEEEEEETTSCEEEE--
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEecCCC--------------CCeEEEEEe-----CCCCEEEEEeCCCeEEEE--
Confidence 56899999999999999999998877766544 489999999 999999999999999999
Q ss_pred ccCCCeeeEeeeee--cccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeE
Q 021036 226 DISCNKFDKVGSYN--AHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLG 303 (318)
Q Consensus 226 ~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 303 (318)
|++..+ .+..+. .+...+.+++|+|++.+|++++.|++|++||+.++.... .+.+|...|.+
T Consensus 268 d~~~~~--~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~--------------~l~~h~~~v~~ 331 (354)
T 2pbi_B 268 DLRADR--EVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVS--------------ILFGHENRVST 331 (354)
T ss_dssp ETTTTE--EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEE--------------EECCCSSCEEE
T ss_pred ECCCCc--EEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEE--------------EEECCCCcEEE
Confidence 555554 333333 234578999999999999999999999999998765442 22346679999
Q ss_pred EEEcCCCcEEEEEe
Q 021036 304 MAVSPGNLVVAMVQ 317 (318)
Q Consensus 304 v~~sp~~~~l~~~~ 317 (318)
++|+|||++|++|.
T Consensus 332 l~~spdg~~l~sgs 345 (354)
T 2pbi_B 332 LRVSPDGTAFCSGS 345 (354)
T ss_dssp EEECTTSSCEEEEE
T ss_pred EEECCCCCEEEEEc
Confidence 99999999999985
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-35 Score=246.62 Aligned_cols=248 Identities=11% Similarity=0.099 Sum_probs=189.9
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhc-------cccccc-----cceeeeecccc-----cCCCCccccccc
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYA-------SRSAML-----HSLAVAWSPVL-----RLSSKKYPVPQN 78 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~-------~~~~~~-----~~~~~~w~p~~-----~~~~~~~~v~~~ 78 (318)
+...+++++.|+++++||+++++.+..+...... ..+..+ ......|+... .+.+|...|.++
T Consensus 24 ~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~ 103 (304)
T 2ynn_A 24 TEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI 103 (304)
T ss_dssp SSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred CCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEE
Confidence 3456899999999999999988765554432111 111100 01123344322 145788999999
Q ss_pred CCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCC-CCcEEEEEeCCC
Q 021036 79 GSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSN-PQVLLVTGSSDG 157 (318)
Q Consensus 79 ~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~-~~~~l~s~~~d~ 157 (318)
+++|++++|++|+.||+|++||++++. .....+.+|...|.+++| +| ++.+|++|+.|+
T Consensus 104 ~~~~~~~~l~sgs~D~~v~lWd~~~~~-------------~~~~~~~~h~~~v~~v~~-------~p~~~~~l~sgs~D~ 163 (304)
T 2ynn_A 104 AVHPTKPYVLSGSDDLTVKLWNWENNW-------------ALEQTFEGHEHFVMCVAF-------NPKDPSTFASGCLDR 163 (304)
T ss_dssp EECSSSSEEEEEETTSCEEEEEGGGTT-------------EEEEEECCCCSCEEEEEE-------CTTCTTEEEEEETTS
T ss_pred EEcCCCCEEEEECCCCeEEEEECCCCc-------------chhhhhcccCCcEEEEEE-------CCCCCCEEEEEeCCC
Confidence 999999999999999999999998753 345678899999999999 66 678999999999
Q ss_pred cEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeee
Q 021036 158 SVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGS 237 (318)
Q Consensus 158 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 237 (318)
+|++||++++.....+.. .+...+..+.+++. +++.+|++|+.|+.|++| |.++++ .+..
T Consensus 164 ~v~iwd~~~~~~~~~~~~-------------~~~~~v~~~~~~~~---~~~~~l~s~s~D~~i~iW--d~~~~~--~~~~ 223 (304)
T 2ynn_A 164 TVKVWSLGQSTPNFTLTT-------------GQERGVNYVDYYPL---PDKPYMITASDDLTIKIW--DYQTKS--CVAT 223 (304)
T ss_dssp EEEEEETTCSSCSEEEEC-------------CCTTCEEEEEECCS---TTCCEEEEEETTSEEEEE--ETTTTE--EEEE
T ss_pred eEEEEECCCCCccceecc-------------CCcCcEEEEEEEEc---CCCCEEEEEcCCCeEEEE--eCCCCc--ccee
Confidence 999999987765444332 23347888888710 367899999999999999 566666 7788
Q ss_pred eecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCc--EEEE
Q 021036 238 YNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNL--VVAM 315 (318)
Q Consensus 238 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~--~l~~ 315 (318)
+.+|...|.+++|+|++.+|++|+.||+|++||+.+++..... ..|...+.+++|+|++. ++|+
T Consensus 224 ~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~as 289 (304)
T 2ynn_A 224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL--------------NVGLERSWCIATHPTGRKNYIAS 289 (304)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE--------------CCSSSSEEEEEECTTCGGGCEEE
T ss_pred eCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeec--------------cCCCccEEEEEECCCCCceEEEE
Confidence 9999999999999999999999999999999999887655322 22445889999999875 5787
Q ss_pred Ee
Q 021036 316 VQ 317 (318)
Q Consensus 316 ~~ 317 (318)
|.
T Consensus 290 g~ 291 (304)
T 2ynn_A 290 GF 291 (304)
T ss_dssp EE
T ss_pred ec
Confidence 64
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=251.82 Aligned_cols=236 Identities=17% Similarity=0.189 Sum_probs=188.5
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeeccccc----------------------------
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLR---------------------------- 67 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~---------------------------- 67 (318)
+...+++|+.|+++++||+.+++.+..+.. +... +.+++|+|++.
T Consensus 66 d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~----~~~~---v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~ 138 (340)
T 1got_B 66 DSRLLLSASQDGKLIIWDSYTTNKVHAIPL----RSSW---VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRE 138 (340)
T ss_dssp TSSEEEEEETTTEEEEEETTTCCEEEEEEC----SSSC---EEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEE
T ss_pred CCCEEEEEeCCCcEEEEECCCCCcceEeec----CCcc---EEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEE
Confidence 455689999999999999998876555443 2222 22345544431
Q ss_pred CCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCC
Q 021036 68 LSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQ 147 (318)
Q Consensus 68 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~ 147 (318)
+.+|...|.++.+++++. +++++.|+.|++||++++ +.+..+.+|...|.+++| ++++
T Consensus 139 ~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~--------------~~~~~~~~h~~~v~~~~~-------~~~~ 196 (340)
T 1got_B 139 LAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETG--------------QQTTTFTGHTGDVMSLSL-------APDT 196 (340)
T ss_dssp EECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTT--------------EEEEEECCCSSCEEEEEE-------CTTS
T ss_pred ecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCC--------------cEEEEEcCCCCceEEEEE-------CCCC
Confidence 345777888888887765 788899999999999874 466788899999999999 8999
Q ss_pred cEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeecc
Q 021036 148 VLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDI 227 (318)
Q Consensus 148 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 227 (318)
++|++|+.|++|++||+++++....+..|. ..|.+++|+ |++++|++|+.||.|++| |.
T Consensus 197 ~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~--------------~~v~~v~~~-----p~~~~l~s~s~d~~v~iw--d~ 255 (340)
T 1got_B 197 RLFVSGACDASAKLWDVREGMCRQTFTGHE--------------SDINAICFF-----PNGNAFATGSDDATCRLF--DL 255 (340)
T ss_dssp SEEEEEETTSCEEEEETTTCSEEEEECCCS--------------SCEEEEEEC-----TTSSEEEEEETTSCEEEE--ET
T ss_pred CEEEEEeCCCcEEEEECCCCeeEEEEcCCc--------------CCEEEEEEc-----CCCCEEEEEcCCCcEEEE--EC
Confidence 999999999999999999988877766544 489999999 999999999999999999 55
Q ss_pred CCCeeeEeeeee--cccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEE
Q 021036 228 SCNKFDKVGSYN--AHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMA 305 (318)
Q Consensus 228 ~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 305 (318)
+..+ .+..+. .+...|++++|+|+|++|++|+.|+.|++||+.++.... .+.+|...|.+++
T Consensus 256 ~~~~--~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~--------------~~~~h~~~v~~~~ 319 (340)
T 1got_B 256 RADQ--ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG--------------VLAGHDNRVSCLG 319 (340)
T ss_dssp TTTE--EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE--------------EEECCSSCEEEEE
T ss_pred CCCc--EEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEee--------------EeecCCCcEEEEE
Confidence 5555 333333 234579999999999999999999999999998765442 2234667999999
Q ss_pred EcCCCcEEEEEe
Q 021036 306 VSPGNLVVAMVQ 317 (318)
Q Consensus 306 ~sp~~~~l~~~~ 317 (318)
|+|+|++||+|.
T Consensus 320 ~s~dg~~l~s~s 331 (340)
T 1got_B 320 VTDDGMAVATGS 331 (340)
T ss_dssp ECTTSSCEEEEE
T ss_pred EcCCCCEEEEEc
Confidence 999999999984
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=246.85 Aligned_cols=198 Identities=18% Similarity=0.203 Sum_probs=156.8
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCc
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGK 95 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~ 95 (318)
+...+++|+.|++|++||+++++...... ...+|...|.+++|+|++++|++|+.|+.
T Consensus 27 ~g~~las~~~D~~i~iw~~~~~~~~~~~~----------------------~~~~h~~~v~~~~~sp~g~~l~s~s~D~~ 84 (345)
T 3fm0_A 27 AGTLLASCGGDRRIRIWGTEGDSWICKSV----------------------LSEGHQRTVRKVAWSPCGNYLASASFDAT 84 (345)
T ss_dssp TSSCEEEEETTSCEEEEEEETTEEEEEEE----------------------ECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CCCEEEEEcCCCeEEEEEcCCCcceeeee----------------------eccccCCcEEEEEECCCCCEEEEEECCCc
Confidence 45678999999999999998764321111 01234444445555555599999999999
Q ss_pred EEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecc
Q 021036 96 VSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEA 175 (318)
Q Consensus 96 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 175 (318)
|+||+...++ .+.+..+.+|...|.+++| ++++++|++|+.|++|++||++.+.....+
T Consensus 85 v~iw~~~~~~------------~~~~~~~~~h~~~v~~v~~-------sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~-- 143 (345)
T 3fm0_A 85 TCIWKKNQDD------------FECVTTLEGHENEVKSVAW-------APSGNLLATCSRDKSVWVWEVDEEDEYECV-- 143 (345)
T ss_dssp EEEEEECCC-------------EEEEEEECCCSSCEEEEEE-------CTTSSEEEEEETTSCEEEEEECTTSCEEEE--
T ss_pred EEEEEccCCC------------eEEEEEccCCCCCceEEEE-------eCCCCEEEEEECCCeEEEEECCCCCCeEEE--
Confidence 9999998754 3466788999999999999 899999999999999999999876432211
Q ss_pred cccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCC
Q 021036 176 HCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGC 255 (318)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 255 (318)
.....|...|.+++|+ |++.+|++|+.|+.|++|+ .+.........+.+|...|++++|+|+|+
T Consensus 144 ---------~~~~~h~~~v~~~~~~-----p~~~~l~s~s~d~~i~~w~--~~~~~~~~~~~~~~h~~~v~~l~~sp~g~ 207 (345)
T 3fm0_A 144 ---------SVLNSHTQDVKHVVWH-----PSQELLASASYDDTVKLYR--EEEDDWVCCATLEGHESTVWSLAFDPSGQ 207 (345)
T ss_dssp ---------EEECCCCSCEEEEEEC-----SSSSCEEEEETTSCEEEEE--EETTEEEEEEEECCCSSCEEEEEECTTSS
T ss_pred ---------EEecCcCCCeEEEEEC-----CCCCEEEEEeCCCcEEEEE--ecCCCEEEEEEecCCCCceEEEEECCCCC
Confidence 1123355689999999 9999999999999999995 44555556678899999999999999999
Q ss_pred EEEEecCCCcEEEEEec
Q 021036 256 CLYSCSQDNFVRSWIFH 272 (318)
Q Consensus 256 ~l~s~~~d~~v~iwd~~ 272 (318)
+|++++.|++|++||..
T Consensus 208 ~l~s~s~D~~v~iW~~~ 224 (345)
T 3fm0_A 208 RLASCSDDRTVRIWRQY 224 (345)
T ss_dssp EEEEEETTSCEEEEEEE
T ss_pred EEEEEeCCCeEEEeccc
Confidence 99999999999999974
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-35 Score=249.29 Aligned_cols=242 Identities=17% Similarity=0.182 Sum_probs=191.2
Q ss_pred CccceEEeeC------CCceeEeecCCCCCCCceecchhccccccccceeeeeccccc----------------------
Q 021036 16 NTHPTVAASK------SKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLR---------------------- 67 (318)
Q Consensus 16 ~~~~~~t~s~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~---------------------- 67 (318)
+...++++|. |+.+++|+..++.....+......|... +.+++|+|++.
T Consensus 53 DG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~---V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~ 129 (357)
T 4g56_B 53 DGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAG---VTDVAWVSEKGILVASDSGAVELWEILEKESLL 129 (357)
T ss_dssp SSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSC---EEEEEEETTTEEEEEETTSCEEEC--------C
T ss_pred CCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCC---EEEEEEcCCCCEEEEECCCEEEEeeccccceeE
Confidence 4566788887 6778889888776544443333334443 44577777543
Q ss_pred -----CCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCC
Q 021036 68 -----LSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSD 142 (318)
Q Consensus 68 -----~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 142 (318)
..+|..+|.++++++++++|++|+.||.|++||++++ +.+..+.+|...|++++|
T Consensus 130 ~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~--------------~~~~~~~~h~~~v~~v~~------ 189 (357)
T 4g56_B 130 VNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK--------------AVLKSYNAHSSEVNCVAA------ 189 (357)
T ss_dssp CCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTT--------------EEEEEECCCSSCEEEEEE------
T ss_pred EEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC--------------cEEEEEcCCCCCEEEEEE------
Confidence 1257889999999999999999999999999999984 466788999999999999
Q ss_pred CCCCC-cEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCC-ceEEEEEeCCCcE
Q 021036 143 SSNPQ-VLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPR-LMLLAVGKGSGSF 220 (318)
Q Consensus 143 ~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~-~~~l~~~~~dg~i 220 (318)
++++ .+|++++.|++|++||+++++....+.... +...+.+++|+ |+ +.+|++|+.|+.|
T Consensus 190 -s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~------------~~~~v~~v~~s-----p~~~~~la~g~~d~~i 251 (357)
T 4g56_B 190 -CPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCA------------SDTIPTSVTWH-----PEKDDTFACGDETGNV 251 (357)
T ss_dssp -CTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTT------------CCSCEEEEEEC-----TTSTTEEEEEESSSCE
T ss_pred -ccCCCceeeeeccCCceEEEECCCCceeeeeeecc------------ccccccchhhh-----hcccceEEEeecccce
Confidence 6665 478999999999999999887665544322 34478999999 66 5789999999999
Q ss_pred EEeeeccCCCeeeEeeeeecccCceeEEEEcCCC-CEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcce
Q 021036 221 DLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDG-CCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFV 299 (318)
Q Consensus 221 ~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 299 (318)
++| |.++.+ .+..+.+|...|++++|+|++ ++|++++.|++|+|||++++++.... +|.+
T Consensus 252 ~~w--d~~~~~--~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~---------------~H~~ 312 (357)
T 4g56_B 252 SLV--NIKNPD--SAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL---------------SHRD 312 (357)
T ss_dssp EEE--ESSCGG--GCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC---------------CCSS
T ss_pred eEE--ECCCCc--EeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC---------------CCCC
Confidence 999 566665 667788999999999999987 58999999999999999988766433 3667
Q ss_pred eeeEEEEcC-CCcEEEEEe
Q 021036 300 SCLGMAVSP-GNLVVAMVQ 317 (318)
Q Consensus 300 ~v~~v~~sp-~~~~l~~~~ 317 (318)
.|++|+|+| |+++|+++.
T Consensus 313 ~V~~vafsP~d~~~l~s~s 331 (357)
T 4g56_B 313 FVTGVAWSPLDHSKFTTVG 331 (357)
T ss_dssp CEEEEEECSSSTTEEEEEE
T ss_pred CEEEEEEeCCCCCEEEEEc
Confidence 999999999 899999874
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-34 Score=241.49 Aligned_cols=231 Identities=13% Similarity=0.165 Sum_probs=179.5
Q ss_pred CCCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEec
Q 021036 12 MKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGG 91 (318)
Q Consensus 12 ~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~ 91 (318)
+.+.+...+++||.|+++++||+......... |...+.+|..+|.++++++++++|++|+
T Consensus 25 ~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~--------------------~~~~~~~h~~~v~~~~~s~dg~~l~s~s 84 (319)
T 3frx_A 25 TSAGQPNLLLSASRDKTLISWKLTGDDQKFGV--------------------PVRSFKGHSHIVQDCTLTADGAYALSAS 84 (319)
T ss_dssp ECSSCTTEEEEEETTSEEEEEEEEEETTEEEE--------------------EEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred ccCCCccEEEEecCCccEEEecCCCCCccccc--------------------cceEEeCCcccEEEEEECCCCCEEEEEe
Confidence 44445567999999999999998653321100 1112445667777777777779999999
Q ss_pred CCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceee
Q 021036 92 RSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQK 171 (318)
Q Consensus 92 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~ 171 (318)
.|++|++||++++ +.+..+.+|...|.+++| ++++.+|++|+.|++|++||++. ++..
T Consensus 85 ~D~~v~~wd~~~~--------------~~~~~~~~h~~~v~~~~~-------~~~~~~l~s~s~D~~i~vwd~~~-~~~~ 142 (319)
T 3frx_A 85 WDKTLRLWDVATG--------------ETYQRFVGHKSDVMSVDI-------DKKASMIISGSRDKTIKVWTIKG-QCLA 142 (319)
T ss_dssp TTSEEEEEETTTT--------------EEEEEEECCSSCEEEEEE-------CTTSCEEEEEETTSCEEEEETTS-CEEE
T ss_pred CCCEEEEEECCCC--------------CeeEEEccCCCcEEEEEE-------cCCCCEEEEEeCCCeEEEEECCC-CeEE
Confidence 9999999999984 466788999999999999 89999999999999999999964 4444
Q ss_pred eecccccccccceeeeeecccceeEEEEeeccC-CCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEE
Q 021036 172 SAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQ-SPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAW 250 (318)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~ 250 (318)
.+.. |...|.++.+.+... .+++..+++++.|+.|++| +.+..+ ....+.+|...|.+++|
T Consensus 143 ~~~~--------------h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~w--d~~~~~--~~~~~~~h~~~v~~~~~ 204 (319)
T 3frx_A 143 TLLG--------------HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW--NLNQFQ--IEADFIGHNSNINTLTA 204 (319)
T ss_dssp EECC--------------CSSCEEEEEECCC------CCEEEEEETTSCEEEE--ETTTTE--EEEEECCCCSCEEEEEE
T ss_pred EEec--------------cCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEE--ECCcch--hheeecCCCCcEEEEEE
Confidence 4443 344788999981100 0145589999999999999 555655 56678899999999999
Q ss_pred cCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 251 AFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 251 ~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
+|+|++|++++.|++|++||+.+++........ ..|.+++|+|++.+|+++.
T Consensus 205 sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---------------~~v~~~~~sp~~~~la~~~ 256 (319)
T 3frx_A 205 SPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ---------------DEVFSLAFSPNRYWLAAAT 256 (319)
T ss_dssp CTTSSEEEEEETTCEEEEEETTTTEEEEEEECC---------------SCEEEEEECSSSSEEEEEE
T ss_pred cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC---------------CcEEEEEEcCCCCEEEEEc
Confidence 999999999999999999999887654432222 2789999999999998864
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-34 Score=246.28 Aligned_cols=242 Identities=17% Similarity=0.190 Sum_probs=187.2
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccc-----------------------------
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVL----------------------------- 66 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~----------------------------- 66 (318)
+...+++||.|+++++||+.+++....+.. |... +.+++|+|++
T Consensus 77 ~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~----h~~~---v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~ 149 (380)
T 3iz6_a 77 EKNWIVSASQDGRLIVWNALTSQKTHAIKL----HCPW---VMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPV 149 (380)
T ss_dssp TSSCEEEEETTSEEEEEETTTTEEEEEEEC----CCTT---CCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTT
T ss_pred CCCEEEEEeCCCeEEEEECCCCccceEEec----CCCC---EEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccc
Confidence 445689999999999999998876655543 3332 2235555543
Q ss_pred --cCCCCcccccccCCCCC-ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeee-----ccccccEEEEEeee
Q 021036 67 --RLSSKKYPVPQNGSSNW-FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLF-----QAHNSWITSISLAV 138 (318)
Q Consensus 67 --~~~~~~~~v~~~~~s~~-~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~~~~~~p 138 (318)
.+.+|...|.++.++++ +..|++|+.|++|++||+.+++. +..+ .+|...|.++.|
T Consensus 150 ~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~--------------~~~~~~~~~~~h~~~v~~~~~-- 213 (380)
T 3iz6_a 150 SRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQR--------------ISIFGSEFPSGHTADVLSLSI-- 213 (380)
T ss_dssp CCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCE--------------EEEECCCSSSSCCSCEEEEEE--
T ss_pred eeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcE--------------EEEeecccCCCCccCeEEEEe--
Confidence 14578888999999997 56799999999999999998653 2333 579999999999
Q ss_pred ecCCCCCCCcEEEEEeCCCcEEEEECCC-cceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCC
Q 021036 139 LSSDSSNPQVLLVTGSSDGSVRIWDGYI-QELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGS 217 (318)
Q Consensus 139 ~~~~~~~~~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~d 217 (318)
++.++.+|++|+.|++|++||++. ++....+.. |...|++++|+ |++.+|++|+.|
T Consensus 214 ----~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~--------------h~~~v~~v~~~-----p~~~~l~s~s~D 270 (380)
T 3iz6_a 214 ----NSLNANMFISGSCDTTVRLWDLRITSRAVRTYHG--------------HEGDINSVKFF-----PDGQRFGTGSDD 270 (380)
T ss_dssp ----CSSSCCEEEEEETTSCEEEEETTTTCCCCEEECC--------------CSSCCCEEEEC-----TTSSEEEEECSS
T ss_pred ----ecCCCCEEEEEECCCeEEEEECCCCCcceEEECC--------------cCCCeEEEEEe-----cCCCeEEEEcCC
Confidence 334788999999999999999984 455555544 44589999999 999999999999
Q ss_pred CcEEEeeeccCCCeeeEeeeeecc-------cCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccc
Q 021036 218 GSFDLWKCDISCNKFDKVGSYNAH-------DQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQS 290 (318)
Q Consensus 218 g~i~vw~~~~~~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~ 290 (318)
|+|++| |++++. .+..+..+ ...|++++|+|+|++|++|+.||.|++||+..+........
T Consensus 271 ~~i~lw--d~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~-------- 338 (380)
T 3iz6_a 271 GTCRLF--DMRTGH--QLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGT-------- 338 (380)
T ss_dssp SCEEEE--ETTTTE--EEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECC--------
T ss_pred CeEEEE--ECCCCc--EEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEec--------
Confidence 999999 566665 44444332 23489999999999999999999999999987655432111
Q ss_pred cccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 291 CTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 291 ~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
...+|.+.|.+++|+|||++|++|.
T Consensus 339 --~~~~h~~~v~~l~~s~dg~~l~sgs 363 (380)
T 3iz6_a 339 --LQNSHEGRISCLGLSSDGSALCTGS 363 (380)
T ss_dssp --SCSSCCCCCCEEEECSSSSEEEEEC
T ss_pred --ccCCCCCceEEEEECCCCCEEEEee
Confidence 1134778999999999999999984
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=229.51 Aligned_cols=233 Identities=17% Similarity=0.214 Sum_probs=172.3
Q ss_pred CCccceEEeeCCCceeEeecCCCC--CCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecC
Q 021036 15 SNTHPTVAASKSKGNSITKIPSNC--CLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGR 92 (318)
Q Consensus 15 ~~~~~~~t~s~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~ 92 (318)
.+...+++|+.|++|++||++... .+..+. +|... +.+++|+|.. ++++|++|+.
T Consensus 19 ~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~----gH~~~---V~~v~~s~~~----------------~g~~l~s~s~ 75 (297)
T 2pm7_B 19 YYGKRMATCSSDKTIKIFEVEGETHKLIDTLT----GHEGP---VWRVDWAHPK----------------FGTILASCSY 75 (297)
T ss_dssp TTSSEEEEEETTSCEEEEEBCSSCBCCCEEEC----CCSSC---EEEEEECCGG----------------GCSEEEEEET
T ss_pred CCCCEEEEEeCCCEEEEEecCCCCcEEEEEEc----cccCC---eEEEEecCCC----------------cCCEEEEEcC
Confidence 345678999999999999997542 221111 13333 3335554320 1589999999
Q ss_pred CCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCC--CcEEEEEeCCCcEEEEECCCccee
Q 021036 93 SGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNP--QVLLVTGSSDGSVRIWDGYIQELQ 170 (318)
Q Consensus 93 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~--~~~l~s~~~d~~v~iwd~~~~~~~ 170 (318)
||+|+|||+++++ ...+..+.+|...|.+++| +++ +.+|++++.|++|++||++.+...
T Consensus 76 D~~v~iWd~~~~~------------~~~~~~~~~h~~~v~~v~~-------~p~~~g~~l~s~s~d~~v~~wd~~~~~~~ 136 (297)
T 2pm7_B 76 DGKVMIWKEENGR------------WSQIAVHAVHSASVNSVQW-------APHEYGPMLLVASSDGKVSVVEFKENGTT 136 (297)
T ss_dssp TTEEEEEEBSSSC------------BCCCEEECCCSSCEEEEEE-------CCGGGCSEEEEEETTSEEEEEEBCSSSCB
T ss_pred CCEEEEEEcCCCc------------eEEEEEeecCCCceeEEEe-------CcCCCCcEEEEEECCCcEEEEEecCCCce
Confidence 9999999998764 2244567789999999999 665 789999999999999999875321
Q ss_pred eeecccccccccceeeeeecccceeEEEEeeccCCCC-------------ceEEEEEeCCCcEEEeeeccCCCeeeEeee
Q 021036 171 KSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPR-------------LMLLAVGKGSGSFDLWKCDISCNKFDKVGS 237 (318)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~-------------~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 237 (318)
.. .....|...|.+++|+ |+ +++|++|+.|+.|++||++...........
T Consensus 137 ~~------------~~~~~h~~~v~~~~~~-----p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~ 199 (297)
T 2pm7_B 137 SP------------IIIDAHAIGVNSASWA-----PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST 199 (297)
T ss_dssp CC------------EEEECCSSCEEEEEEC-----CCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEE
T ss_pred ee------------eeeecccCccceEeec-----CCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEE
Confidence 10 1123456689999998 65 579999999999999976544444445667
Q ss_pred eecccCceeEEEEcCCC---CEEEEecCCCcEEEEEecCCce--eeeecCCCCCCccccccCCCcceeeeEEEEcCCCcE
Q 021036 238 YNAHDQVVTGLAWAFDG---CCLYSCSQDNFVRSWIFHGNSL--SQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLV 312 (318)
Q Consensus 238 ~~~h~~~v~~~~~~~~~---~~l~s~~~d~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~ 312 (318)
+.+|...|.+++|+|++ .+|++++.|++|++||+..... ...... ...|...|.+++|+|+|++
T Consensus 200 l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~-----------~~~~~~~v~~~~~s~~g~~ 268 (297)
T 2pm7_B 200 LEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLK-----------EEKFPDVLWRASWSLSGNV 268 (297)
T ss_dssp ECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESS-----------SSCCSSCEEEEEECSSSCC
T ss_pred ecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeee-----------cccCCCcEEEEEECCCCCE
Confidence 88999999999999985 7999999999999999976431 111110 1235568999999999999
Q ss_pred EEEEe
Q 021036 313 VAMVQ 317 (318)
Q Consensus 313 l~~~~ 317 (318)
||++.
T Consensus 269 las~~ 273 (297)
T 2pm7_B 269 LALSG 273 (297)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 99874
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-33 Score=234.76 Aligned_cols=226 Identities=15% Similarity=0.145 Sum_probs=174.4
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCc
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGK 95 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~ 95 (318)
+...+++|+.|++|++||+.+.+....... +...+.+|..+|.++++++++.+|++|+.|++
T Consensus 38 d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~------------------~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~ 99 (343)
T 2xzm_R 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGI------------------PHKALTGHNHFVSDLALSQENCFAISSSWDKT 99 (343)
T ss_dssp CCCEEEEEETTSCEEEEEECSSCCSSBSEE------------------EEEEECCCSSCEEEEEECSSTTEEEEEETTSE
T ss_pred CCCEEEEEcCCCEEEEEECCcCCccccccc------------------ccchhccCCCceEEEEECCCCCEEEEEcCCCc
Confidence 566799999999999999976543211100 11134566677777777777799999999999
Q ss_pred EEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecc
Q 021036 96 VSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEA 175 (318)
Q Consensus 96 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 175 (318)
|++||+++++ .+..+.+|...|.+++| ++++++|++++.|++|++||+.... ......
T Consensus 100 v~lwd~~~~~--------------~~~~~~~h~~~v~~v~~-------sp~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~ 157 (343)
T 2xzm_R 100 LRLWDLRTGT--------------TYKRFVGHQSEVYSVAF-------SPDNRQILSAGAEREIKLWNILGEC-KFSSAE 157 (343)
T ss_dssp EEEEETTSSC--------------EEEEEECCCSCEEEEEE-------CSSTTEEEEEETTSCEEEEESSSCE-EEECCT
T ss_pred EEEEECCCCc--------------EEEEEcCCCCcEEEEEE-------CCCCCEEEEEcCCCEEEEEeccCCc-eeeeec
Confidence 9999999854 56778899999999999 8999999999999999999997432 222110
Q ss_pred cccccccceeeeeecccceeEEEEeeccCCCCc----------eEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCce
Q 021036 176 HCVPFSLLKEVVTVNTVPISVLSLILPVQSPRL----------MLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVV 245 (318)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~----------~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v 245 (318)
. ..|...|.+++|+ |++ .+|++++.||.|++|| . ... ....+.+|...|
T Consensus 158 ~-----------~~~~~~v~~~~~~-----~~~~~~~~~~~~~~~l~s~~~d~~i~iwd--~-~~~--~~~~~~~h~~~v 216 (343)
T 2xzm_R 158 K-----------ENHSDWVSCVRYS-----PIMKSANKVQPFAPYFASVGWDGRLKVWN--T-NFQ--IRYTFKAHESNV 216 (343)
T ss_dssp T-----------TSCSSCEEEEEEC-----CCCCSCSCCCSSCCEEEEEETTSEEEEEE--T-TTE--EEEEEECCSSCE
T ss_pred c-----------cCCCceeeeeeec-----cccccccccCCCCCEEEEEcCCCEEEEEc--C-CCc--eeEEEcCccccc
Confidence 0 1345589999998 665 7999999999999995 3 233 566788999999
Q ss_pred eEEEEcCCCCEEEEecCCCcEEEEEecCCc-eeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 246 TGLAWAFDGCCLYSCSQDNFVRSWIFHGNS-LSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 246 ~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
.+++|+|+|++|++|+.|+.|++||+.... ...... +...|.+++|+|++++++++.
T Consensus 217 ~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~---------------~~~~v~~v~~sp~~~~la~~~ 274 (343)
T 2xzm_R 217 NHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD---------------AGSTINQIAFNPKLQWVAVGT 274 (343)
T ss_dssp EEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE---------------CSSCEEEEEECSSSCEEEEEE
T ss_pred eEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec---------------CCCcEEEEEECCCCCEEEEEC
Confidence 999999999999999999999999995422 221111 123689999999999998763
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-33 Score=252.94 Aligned_cols=271 Identities=17% Similarity=0.140 Sum_probs=196.5
Q ss_pred CCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeeccccc------------------------C
Q 021036 13 KDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLR------------------------L 68 (318)
Q Consensus 13 ~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~------------------------~ 68 (318)
.+.....+++++.|+++++||.+++++...+.. |... +.+++|+|++. +
T Consensus 156 ~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~----H~~~---V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~ 228 (611)
T 1nr0_A 156 KPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE----HTKF---VHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVF 228 (611)
T ss_dssp CSSSSCEEEEEETTSCEEEEETTTBEEEEEECC----CSSC---EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEC
T ss_pred CCCCCeEEEEEeCCCeEEEEECCCCeEeeeecc----ccCc---eEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeee
Confidence 333344689999999999999887765444432 3333 33356665542 2
Q ss_pred -C------CCcccccccCCCCCccEEEEecCCCcEEEEEccCCcccccccc-----------------------------
Q 021036 69 -S------SKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDC----------------------------- 112 (318)
Q Consensus 69 -~------~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~----------------------------- 112 (318)
. +|...|.+++|+|++++|++++.|++|++||+.++++......
T Consensus 229 ~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~ 308 (611)
T 1nr0_A 229 EDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINF 308 (611)
T ss_dssp BCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEE
T ss_pred ccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEE
Confidence 1 6889999999999999999999999999999998765432110
Q ss_pred ccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeee-ccccccccc---------
Q 021036 113 KVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSA-EAHCVPFSL--------- 182 (318)
Q Consensus 113 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~-~~~~~~~~~--------- 182 (318)
......+....+.+|...|++++| ++++++|++++.|++|++||+.+++....+ ..|...+..
T Consensus 309 ~~~~~~~~~~~~~gh~~~v~~l~~-------spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l 381 (611)
T 1nr0_A 309 VNPELGSIDQVRYGHNKAITALSS-------SADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL 381 (611)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEE-------CTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE
T ss_pred EeCCCCCcceEEcCCCCCEEEEEE-------eCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcE
Confidence 001112345567799999999999 899999999999999999999887654332 111100000
Q ss_pred ----------------------------------------c------------------eeeeeecccceeEEEEeeccC
Q 021036 183 ----------------------------------------L------------------KEVVTVNTVPISVLSLILPVQ 204 (318)
Q Consensus 183 ----------------------------------------~------------------~~~~~~~~~~v~~l~~~~~~~ 204 (318)
. ......+...+.+++|+
T Consensus 382 ~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~s---- 457 (611)
T 1nr0_A 382 FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALS---- 457 (611)
T ss_dssp EEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEEC----
T ss_pred EEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEe----
Confidence 0 00001134567899999
Q ss_pred CCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecC-CceeeeecCC
Q 021036 205 SPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHG-NSLSQVSIPT 283 (318)
Q Consensus 205 ~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~ 283 (318)
|+|++|++|+.|+.|++|++ .+.....+.. .+|...|++++|+|+|++|++++.|++|++||+.+ +++....
T Consensus 458 -pdg~~lasgs~D~~v~lwd~--~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~--- 530 (611)
T 1nr0_A 458 -NDKQFVAVGGQDSKVHVYKL--SGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTN--- 530 (611)
T ss_dssp -TTSCEEEEEETTSEEEEEEE--ETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCC---
T ss_pred -CCCCEEEEeCCCCeEEEEEc--cCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeee---
Confidence 99999999999999999955 4444334444 67999999999999999999999999999999986 4332210
Q ss_pred CCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 284 NTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 284 ~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
....|...|++++|+|||++||+|.
T Consensus 531 ---------~~~~H~~~V~~v~fspdg~~lasgs 555 (611)
T 1nr0_A 531 ---------SWTFHTAKVACVSWSPDNVRLATGS 555 (611)
T ss_dssp ---------CCCCCSSCEEEEEECTTSSEEEEEE
T ss_pred ---------eeeecccceeEEEECCCCCEEEEEE
Confidence 1223778999999999999999974
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=251.13 Aligned_cols=247 Identities=12% Similarity=0.162 Sum_probs=192.2
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeeccccc--------------------------CC
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLR--------------------------LS 69 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~--------------------------~~ 69 (318)
+...+++|+.|++|++||+.+++........ .|... +.+++|+|++. +.
T Consensus 70 dg~~lasg~~d~~v~lWd~~~~~~~~~~~~~--~~~~~---v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~ 144 (611)
T 1nr0_A 70 SGYYCASGDVHGNVRIWDTTQTTHILKTTIP--VFSGP---VKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLT 144 (611)
T ss_dssp TSSEEEEEETTSEEEEEESSSTTCCEEEEEE--CSSSC---EEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCC
T ss_pred CCcEEEEEeCCCCEEEeECCCCcceeeEeec--ccCCc---eEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceec
Confidence 4566899999999999999765543222211 13333 44477777642 45
Q ss_pred CCcccccccCCCCCcc-EEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCc
Q 021036 70 SKKYPVPQNGSSNWFS-ILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQV 148 (318)
Q Consensus 70 ~~~~~v~~~~~s~~~~-~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~ 148 (318)
+|..+|.+++|+|++. .|++|+.|++|++||..+ .+....+.+|...|++++| +|+++
T Consensus 145 gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~--------------~~~~~~l~~H~~~V~~v~f-------spdg~ 203 (611)
T 1nr0_A 145 GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP--------------FKFKSTFGEHTKFVHSVRY-------NPDGS 203 (611)
T ss_dssp CCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT--------------BEEEEEECCCSSCEEEEEE-------CTTSS
T ss_pred CCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCC--------------CeEeeeeccccCceEEEEE-------CCCCC
Confidence 7888999999999986 699999999999999876 4566788999999999999 89999
Q ss_pred EEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccC
Q 021036 149 LLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDIS 228 (318)
Q Consensus 149 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~ 228 (318)
+|++++.|++|++||+.+++....+..... ....|...|.+++|+ |++++|++++.|++|++||+ +
T Consensus 204 ~las~s~D~~i~lwd~~~g~~~~~~~~~~~-------~~~~h~~~V~~v~~s-----pdg~~l~s~s~D~~v~lWd~--~ 269 (611)
T 1nr0_A 204 LFASTGGDGTIVLYNGVDGTKTGVFEDDSL-------KNVAHSGSVFGLTWS-----PDGTKIASASADKTIKIWNV--A 269 (611)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEECBCTTS-------SSCSSSSCEEEEEEC-----TTSSEEEEEETTSEEEEEET--T
T ss_pred EEEEEECCCcEEEEECCCCcEeeeeccccc-------cccccCCCEEEEEEC-----CCCCEEEEEeCCCeEEEEeC--C
Confidence 999999999999999998887766531100 012466799999999 99999999999999999954 4
Q ss_pred CCeee-----------------------------------------EeeeeecccCceeEEEEcCCCCEEEEecCCCcEE
Q 021036 229 CNKFD-----------------------------------------KVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVR 267 (318)
Q Consensus 229 ~~~~~-----------------------------------------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~ 267 (318)
+++.. ....+.+|...|++++|+|+|++|++++.|++|+
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~ 349 (611)
T 1nr0_A 270 TLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHIN 349 (611)
T ss_dssp TTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEE
Confidence 33311 2234568999999999999999999999999999
Q ss_pred EEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 268 SWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 268 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
+||+.++....... .+|...|.+++|++++.++..
T Consensus 350 ~Wd~~~~~~~~~~~-------------~~h~~~v~~~~~s~~~~l~s~ 384 (611)
T 1nr0_A 350 SWDISTGISNRVFP-------------DVHATMITGIKTTSKGDLFTV 384 (611)
T ss_dssp EEETTTCCEEECSS-------------CSCSSCEEEEEECTTSCEEEE
T ss_pred EEECCCCceeeecc-------------cCCcceEEEEEECCCCcEEEE
Confidence 99998876654221 236678999999988765543
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-33 Score=234.56 Aligned_cols=203 Identities=20% Similarity=0.250 Sum_probs=172.6
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeeccccc------------------------CCCCcc
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLR------------------------LSSKKY 73 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~------------------------~~~~~~ 73 (318)
..+++++.|++|++||+.+++++..+... ... +.+++|+|++. +..|..
T Consensus 93 ~~l~s~s~D~~i~lWd~~~~~~~~~~~~~----~~~---~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~ 165 (321)
T 3ow8_A 93 PIAASSSLDAHIRLWDLENGKQIKSIDAG----PVD---AWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGK 165 (321)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECC----TTC---CCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSS
T ss_pred CEEEEEeCCCcEEEEECCCCCEEEEEeCC----Ccc---EEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCc
Confidence 45789999999999999998776655432 222 23366666543 234566
Q ss_pred cccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEE
Q 021036 74 PVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTG 153 (318)
Q Consensus 74 ~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~ 153 (318)
.|.+++++|++++|++|+.||.|++||++++ +.+..+.+|..+|.+++| ++++++|++|
T Consensus 166 ~v~~~~~spdg~~lasg~~dg~i~iwd~~~~--------------~~~~~~~~h~~~v~~l~~-------spd~~~l~s~ 224 (321)
T 3ow8_A 166 FILSIAYSPDGKYLASGAIDGIINIFDIATG--------------KLLHTLEGHAMPIRSLTF-------SPDSQLLVTA 224 (321)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTT--------------EEEEEECCCSSCCCEEEE-------CTTSCEEEEE
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCCC--------------cEEEEEcccCCceeEEEE-------cCCCCEEEEE
Confidence 7899999999999999999999999999984 466788999999999999 8999999999
Q ss_pred eCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeee
Q 021036 154 SSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFD 233 (318)
Q Consensus 154 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 233 (318)
+.|++|++||+++++....+..|. ..|.+++|+ |++.+|++++.|+.|++| +.++++
T Consensus 225 s~dg~i~iwd~~~~~~~~~~~~h~--------------~~v~~~~~s-----p~~~~l~s~s~D~~v~iw--d~~~~~-- 281 (321)
T 3ow8_A 225 SDDGYIKIYDVQHANLAGTLSGHA--------------SWVLNVAFC-----PDDTHFVSSSSDKSVKVW--DVGTRT-- 281 (321)
T ss_dssp CTTSCEEEEETTTCCEEEEECCCS--------------SCEEEEEEC-----TTSSEEEEEETTSCEEEE--ETTTTE--
T ss_pred cCCCeEEEEECCCcceeEEEcCCC--------------CceEEEEEC-----CCCCEEEEEeCCCcEEEE--eCCCCE--
Confidence 999999999999888777665544 489999999 999999999999999999 566666
Q ss_pred EeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEe
Q 021036 234 KVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIF 271 (318)
Q Consensus 234 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~ 271 (318)
++.++.+|...|.+++|+|++.+|++++.|++|++||.
T Consensus 282 ~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 282 CVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred EEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 67788899999999999999999999999999999996
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-32 Score=229.94 Aligned_cols=235 Identities=20% Similarity=0.213 Sum_probs=163.9
Q ss_pred ceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEE
Q 021036 19 PTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSL 98 (318)
Q Consensus 19 ~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i 98 (318)
.+++|+.|++|++||+.++.......... . .|..+|.+++|+|++++|++|+.|+.|+|
T Consensus 26 ~las~~~D~~i~lw~~~~~~~~~~~~~~~-~--------------------~h~~~v~~v~~sp~~~~las~s~D~~v~i 84 (330)
T 2hes_X 26 ILATGSTDRKIKLVSVKYDDFTLIDVLDE-T--------------------AHKKAIRSVAWRPHTSLLAAGSFDSTVSI 84 (330)
T ss_dssp EEEEEESSSCEEEEECSSSCCEEEEEECT-T--------------------CCCSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EEEEEcCCCEEEEEEecCCCeEEEEEEec-C--------------------CccCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence 78999999999999998753211100000 1 13334444444444499999999999999
Q ss_pred EEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCc----ceeeeec
Q 021036 99 WRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQ----ELQKSAE 174 (318)
Q Consensus 99 w~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~----~~~~~~~ 174 (318)
|+++..... ....+.+..+.+|...|.+++| ++++++|++|+.|++|++||++.. +++..+.
T Consensus 85 w~~~~~~~~-------~~~~~~~~~~~~h~~~V~~v~~-------sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~ 150 (330)
T 2hes_X 85 WAKEESADR-------TFEMDLLAIIEGHENEVKGVAW-------SNDGYYLATCSRDKSVWIWETDESGEEYECISVLQ 150 (330)
T ss_dssp EEC--------------CCCEEEEEEC----CEEEEEE-------CTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEEC
T ss_pred EEcccCcCc-------cccceeEEEEcCCCCcEEEEEE-------CCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEec
Confidence 998642100 0013456778899999999999 899999999999999999999532 2233333
Q ss_pred ccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCC-
Q 021036 175 AHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFD- 253 (318)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~- 253 (318)
.|...|.+++|+ |++.+|++|+.|++|++|+ ......+++..+.+|...|.+++|+|+
T Consensus 151 --------------~h~~~v~~v~~~-----p~~~~l~s~s~D~~i~iW~--~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 209 (330)
T 2hes_X 151 --------------EHSQDVKHVIWH-----PSEALLASSSYDDTVRIWK--DYDDDWECVAVLNGHEGTVWSSDFDKTE 209 (330)
T ss_dssp --------------CCSSCEEEEEEC-----SSSSEEEEEETTSCEEEEE--EETTEEEEEEEECCCSSCEEEEEECCSS
T ss_pred --------------cCCCceEEEEEC-----CCCCEEEEEcCCCeEEEEE--CCCCCeeEEEEccCCCCcEEEEEecCCC
Confidence 355589999999 9999999999999999995 444544577889999999999999998
Q ss_pred -CCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCC-CcceeeeEEEEcCCCcEEEEE
Q 021036 254 -GCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLP-DAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 254 -~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~sp~~~~l~~~ 316 (318)
+.+|++++.|++|++||+..+...... .......+. .|...|++++|++++ +|+++
T Consensus 210 ~~~~l~s~s~D~~v~iw~~~~~~~~~~~------~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~ 267 (330)
T 2hes_X 210 GVFRLCSGSDDSTVRVWKYMGDDEDDQQ------EWVCEAILPDVHKRQVYNVAWGFNG-LIASV 267 (330)
T ss_dssp SSCEEEEEETTSCEEEEEEEEECTTSCE------EEEEEEECCSCCSSCEEEEEECTTS-CEEEE
T ss_pred CeeEEEEEeCCCeEEEEEecCCCccccc------eeEEeeecccccccceEEEEEcCCC-EEEEE
Confidence 678999999999999999754210000 000001122 266799999999876 56655
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-32 Score=228.67 Aligned_cols=237 Identities=21% Similarity=0.268 Sum_probs=189.4
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeeccccc------------------------CCCC
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLR------------------------LSSK 71 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~------------------------~~~~ 71 (318)
+...+++++.|+.+++|++.+++....+.. |... +.+++|+|++. +.+|
T Consensus 34 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~----h~~~---v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 106 (312)
T 4ery_A 34 NGEWLASSSADKLIKIWGAYDGKFEKTISG----HKLG---ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 106 (312)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCEEEEECC----CSSC---EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred CCCEEEEeeCCCeEEEEeCCCcccchhhcc----CCCc---eEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCC
Confidence 445689999999999999988876554432 3332 33466666542 3467
Q ss_pred cccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEE
Q 021036 72 KYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLV 151 (318)
Q Consensus 72 ~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~ 151 (318)
...|.++.+++++++|++|+.||.|++||+++++ .+..+..|..+|.+++| ++++++|+
T Consensus 107 ~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--------------~~~~~~~~~~~v~~~~~-------~~~~~~l~ 165 (312)
T 4ery_A 107 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK--------------CLKTLPAHSDPVSAVHF-------NRDGSLIV 165 (312)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC--------------EEEEECCCSSCEEEEEE-------CTTSSEEE
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE--------------EEEEecCCCCcEEEEEE-------cCCCCEEE
Confidence 8889999999999999999999999999998743 56778899999999999 89999999
Q ss_pred EEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCe
Q 021036 152 TGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNK 231 (318)
Q Consensus 152 s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~ 231 (318)
+++.|+.|++||+++++....+... +..++..++|+ |++++|++++.||.|++| |.++++
T Consensus 166 ~~~~d~~i~~wd~~~~~~~~~~~~~-------------~~~~~~~~~~~-----~~~~~l~~~~~d~~i~iw--d~~~~~ 225 (312)
T 4ery_A 166 SSSYDGLCRIWDTASGQCLKTLIDD-------------DNPPVSFVKFS-----PNGKYILAATLDNTLKLW--DYSKGK 225 (312)
T ss_dssp EEETTSCEEEEETTTCCEEEEECCS-------------SCCCEEEEEEC-----TTSSEEEEEETTTEEEEE--ETTTTE
T ss_pred EEeCCCcEEEEECCCCceeeEEecc-------------CCCceEEEEEC-----CCCCEEEEEcCCCeEEEE--ECCCCc
Confidence 9999999999999988776654322 23478899999 999999999999999999 566665
Q ss_pred eeEeeeeecccCceeE--EEEc-CCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcC
Q 021036 232 FDKVGSYNAHDQVVTG--LAWA-FDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSP 308 (318)
Q Consensus 232 ~~~~~~~~~h~~~v~~--~~~~-~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp 308 (318)
.+..+.+|...+.+ ..++ +++.+|++|+.||.|++||+.++.... .+.+|...|.+++|+|
T Consensus 226 --~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~--------------~~~~h~~~v~~~~~~p 289 (312)
T 4ery_A 226 --CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ--------------KLQGHTDVVISTACHP 289 (312)
T ss_dssp --EEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEE--------------EECCCSSCEEEEEECS
T ss_pred --EEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhh--------------hhhccCCcEEEEeecC
Confidence 56677777654433 2344 578899999999999999998876543 2334667999999999
Q ss_pred CCcEEEEE
Q 021036 309 GNLVVAMV 316 (318)
Q Consensus 309 ~~~~l~~~ 316 (318)
++.+|+++
T Consensus 290 ~~~~l~s~ 297 (312)
T 4ery_A 290 TENIIASA 297 (312)
T ss_dssp SSSEEEEE
T ss_pred cCCceEEE
Confidence 99999987
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=233.70 Aligned_cols=180 Identities=20% Similarity=0.236 Sum_probs=141.9
Q ss_pred EEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECC
Q 021036 86 ILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGY 165 (318)
Q Consensus 86 ~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~ 165 (318)
.|++|+.||+|+|||+++++.. ......+.+|.+.|++++| ++++++|++|+.|++|++||++
T Consensus 95 ~l~~~s~dg~v~lWd~~~~~~~----------~~~~~~~~~H~~~V~~v~~-------spdg~~l~sgs~d~~i~iwd~~ 157 (344)
T 4gqb_B 95 GILVASDSGAVELWELDENETL----------IVSKFCKYEHDDIVSTVSV-------LSSGTQAVSGSKDICIKVWDLA 157 (344)
T ss_dssp EEEEEETTSEEEEEEECTTSSC----------EEEEEEEECCSSCEEEEEE-------CTTSSEEEEEETTSCEEEEETT
T ss_pred eEEEEECCCEEEEEeccCCCce----------eEeeccccCCCCCEEEEEE-------CCCCCEEEEEeCCCeEEEEECC
Confidence 6789999999999999987643 2233445689999999999 8999999999999999999999
Q ss_pred CcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCc-eEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCc
Q 021036 166 IQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRL-MLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQV 244 (318)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~ 244 (318)
+++++..+..|. ..|++++|+ +++ .+|++|+.|++|++| |.++++.........|...
T Consensus 158 ~~~~~~~~~~h~--------------~~V~~~~~~-----~~~~~~l~s~s~D~~v~iw--d~~~~~~~~~~~~~~~~~~ 216 (344)
T 4gqb_B 158 QQVVLSSYRAHA--------------AQVTCVAAS-----PHKDSVFLSCSEDNRILLW--DTRCPKPASQIGCSAPGYL 216 (344)
T ss_dssp TTEEEEEECCCS--------------SCEEEEEEC-----SSCTTEEEEEETTSCEEEE--ETTSSSCEEECC----CCC
T ss_pred CCcEEEEEcCcC--------------CceEEEEec-----CCCCCceeeeccccccccc--cccccceeeeeecceeecc
Confidence 998888776554 489999999 776 588999999999999 5566552222223456678
Q ss_pred eeEEEEcCC-CCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCC-cEEEEEe
Q 021036 245 VTGLAWAFD-GCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGN-LVVAMVQ 317 (318)
Q Consensus 245 v~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~-~~l~~~~ 317 (318)
+.+++|+|+ +.+|++|+.|++|++||+++++... .+.+|...|++++|+|++ ++||+|.
T Consensus 217 ~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~--------------~~~~h~~~v~~v~fsp~g~~~lasgs 277 (344)
T 4gqb_B 217 PTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVL--------------SSAVHSQCVTGLVFSPHSVPFLASLS 277 (344)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEESCC--CCE--------------EEECCSSCEEEEEECSSSSCCEEEEE
T ss_pred ceeeeecCCCCcceEEeccCCcEEEEECCCCcEEE--------------EEcCCCCCEEEEEEccCCCeEEEEEe
Confidence 999999995 5689999999999999998765442 223466699999999998 5788874
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-32 Score=226.40 Aligned_cols=207 Identities=17% Similarity=0.188 Sum_probs=167.8
Q ss_pred CCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCC
Q 021036 68 LSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQ 147 (318)
Q Consensus 68 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~ 147 (318)
+.+|..+|.+++|+|++++|++|+.||.|++||++++ ..++.+..|..+|.+++| ++++
T Consensus 9 ~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~--------------~~~~~~~~~~~~v~~~~~-------~~~~ 67 (304)
T 2ynn_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQ--------------VEVRSIQVTETPVRAGKF-------IARK 67 (304)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT--------------EEEEEEECCSSCEEEEEE-------EGGG
T ss_pred ecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC--------------ceeEEeeccCCcEEEEEE-------eCCC
Confidence 4456677777777777899999999999999999984 466788899999999999 8899
Q ss_pred cEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeecc
Q 021036 148 VLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDI 227 (318)
Q Consensus 148 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 227 (318)
++|++|+.|++|++||+.+++.+..+..|. ..|.+++|+ |++.+|++|+.|++|++||+
T Consensus 68 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~--------------~~v~~~~~~-----~~~~~l~sgs~D~~v~lWd~-- 126 (304)
T 2ynn_A 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHP--------------DYIRSIAVH-----PTKPYVLSGSDDLTVKLWNW-- 126 (304)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEECCS--------------SCEEEEEEC-----SSSSEEEEEETTSCEEEEEG--
T ss_pred CEEEEECCCCEEEEEECCCCcEEEEEeCCC--------------CcEEEEEEc-----CCCCEEEEECCCCeEEEEEC--
Confidence 999999999999999999998877776554 489999999 99999999999999999954
Q ss_pred CCCeeeEeeeeecccCceeEEEEcC-CCCEEEEecCCCcEEEEEecCCcee------------eeecC--CCCCCcc-cc
Q 021036 228 SCNKFDKVGSYNAHDQVVTGLAWAF-DGCCLYSCSQDNFVRSWIFHGNSLS------------QVSIP--TNTPGLQ-SC 291 (318)
Q Consensus 228 ~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~------------~~~~~--~~~~~~~-~~ 291 (318)
+++. .....+.+|...|.+++|+| ++.+|++|+.|++|++||++..... .+... +....++ ++
T Consensus 127 ~~~~-~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s 205 (304)
T 2ynn_A 127 ENNW-ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS 205 (304)
T ss_dssp GGTT-EEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEE
T ss_pred CCCc-chhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEc
Confidence 4432 24567889999999999999 6789999999999999998653321 11111 2233343 22
Q ss_pred cc----------------CCCcceeeeEEEEcCCCcEEEEEe
Q 021036 292 TD----------------LPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 292 ~~----------------~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
.+ +.+|...|.+++|+|++++|++|.
T Consensus 206 ~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s 247 (304)
T 2ynn_A 206 DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS 247 (304)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEE
T ss_pred CCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEc
Confidence 22 348999999999999999999984
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-31 Score=222.78 Aligned_cols=230 Identities=16% Similarity=0.237 Sum_probs=172.1
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCc
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGK 95 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~ 95 (318)
+...+++++.|++|++||+.+++.+..+.. |... +.+++|+|++ ++|++|+.|+.
T Consensus 76 dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~----h~~~---v~~~~~~~~~------------------~~l~s~s~D~~ 130 (319)
T 3frx_A 76 DGAYALSASWDKTLRLWDVATGETYQRFVG----HKSD---VMSVDIDKKA------------------SMIISGSRDKT 130 (319)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEEC----CSSC---EEEEEECTTS------------------CEEEEEETTSC
T ss_pred CCCEEEEEeCCCEEEEEECCCCCeeEEEcc----CCCc---EEEEEEcCCC------------------CEEEEEeCCCe
Confidence 455689999999999999998876444332 3332 3335555555 99999999999
Q ss_pred EEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecc
Q 021036 96 VSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEA 175 (318)
Q Consensus 96 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 175 (318)
|++||++. +.+..+.+|...|.++.|.|.... ..++..|++++.|+.|++||+++++....+..
T Consensus 131 i~vwd~~~---------------~~~~~~~~h~~~v~~~~~~~~~~~-~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 194 (319)
T 3frx_A 131 IKVWTIKG---------------QCLATLLGHNDWVSQVRVVPNEKA-DDDSVTIISAGNDKMVKAWNLNQFQIEADFIG 194 (319)
T ss_dssp EEEEETTS---------------CEEEEECCCSSCEEEEEECCC-------CCEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EEEEECCC---------------CeEEEEeccCCcEEEEEEccCCCC-CCCccEEEEEeCCCEEEEEECCcchhheeecC
Confidence 99999974 355678899999999999443321 23556899999999999999998877666554
Q ss_pred cccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCC
Q 021036 176 HCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGC 255 (318)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 255 (318)
| ...|.+++|+ |++++|++|+.||.|++| |.++.+ .+..+.. ...|.+++|+|++.
T Consensus 195 h--------------~~~v~~~~~s-----p~g~~l~s~~~dg~i~iw--d~~~~~--~~~~~~~-~~~v~~~~~sp~~~ 250 (319)
T 3frx_A 195 H--------------NSNINTLTAS-----PDGTLIASAGKDGEIMLW--NLAAKK--AMYTLSA-QDEVFSLAFSPNRY 250 (319)
T ss_dssp C--------------CSCEEEEEEC-----TTSSEEEEEETTCEEEEE--ETTTTE--EEEEEEC-CSCEEEEEECSSSS
T ss_pred C--------------CCcEEEEEEc-----CCCCEEEEEeCCCeEEEE--ECCCCc--EEEEecC-CCcEEEEEEcCCCC
Confidence 4 4489999999 999999999999999999 566665 5556654 46899999999999
Q ss_pred EEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 256 CLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 256 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
+|++++.+ .+++|++..+........... .....|...+.+++|+|||++|++|.
T Consensus 251 ~la~~~~~-~i~v~~~~~~~~~~~~~~~~~------~~~~~~~~~v~~~~~spdg~~l~sg~ 305 (319)
T 3frx_A 251 WLAAATAT-GIKVFSLDPQYLVDDLRPEFA------GYSKAAEPHAVSLAWSADGQTLFAGY 305 (319)
T ss_dssp EEEEEETT-EEEEEEETTEEEEEEECCCCT------TCCGGGCCCEEEEEECTTSSEEEEEE
T ss_pred EEEEEcCC-CcEEEEeCcCeeeeccCcccc------ccccCcCcceeEEEECCCCCEEEEee
Confidence 99888754 599999987654432211110 01123456789999999999999984
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=231.31 Aligned_cols=235 Identities=20% Similarity=0.221 Sum_probs=168.9
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCc
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGK 95 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~ 95 (318)
+...+++|+.|++|++||+.+++....... .+|... +.+++|+|.. ++++|++|+.|++
T Consensus 24 ~g~~lasgs~D~~v~lwd~~~~~~~~~~~l--~gH~~~---V~~v~~~~~~----------------~~~~l~s~s~D~~ 82 (316)
T 3bg1_A 24 YGTRLATCSSDRSVKIFDVRNGGQILIADL--RGHEGP---VWQVAWAHPM----------------YGNILASCSYDRK 82 (316)
T ss_dssp GGCEEEEEETTTEEEEEEEETTEEEEEEEE--ECCSSC---EEEEEECCGG----------------GSSCEEEEETTSC
T ss_pred CCCEEEEEeCCCeEEEEEecCCCcEEEEEE--cCCCcc---EEEEEeCCCC----------------CCCEEEEEECCCE
Confidence 456689999999999999987642111111 113333 3335554320 2589999999999
Q ss_pred EEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCC--CcEEEEEeCCCcEEEEECCCcceeeee
Q 021036 96 VSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNP--QVLLVTGSSDGSVRIWDGYIQELQKSA 173 (318)
Q Consensus 96 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~--~~~l~s~~~d~~v~iwd~~~~~~~~~~ 173 (318)
|++||+++++ ......+.+|...|++++| +++ +.+|++|+.|++|++||++.+......
T Consensus 83 v~iWd~~~~~------------~~~~~~~~~h~~~V~~v~~-------~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~ 143 (316)
T 3bg1_A 83 VIIWREENGT------------WEKSHEHAGHDSSVNSVCW-------APHDYGLILACGSSDGAISLLTYTGEGQWEVK 143 (316)
T ss_dssp EEEECCSSSC------------CCEEEEECCCSSCCCEEEE-------CCTTTCSCEEEECSSSCEEEEEECSSSCEEEC
T ss_pred EEEEECCCCc------------ceEEEEccCCCCceEEEEE-------CCCCCCcEEEEEcCCCCEEEEecCCCCCccee
Confidence 9999998754 2345677899999999999 665 789999999999999999875322111
Q ss_pred cccccccccceeeeeecccceeEEEEeeccCCCC-----------------ceEEEEEeCCCcEEEeeeccCCCeeeEee
Q 021036 174 EAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPR-----------------LMLLAVGKGSGSFDLWKCDISCNKFDKVG 236 (318)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~-----------------~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 236 (318)
. ....|...+.+++|+ |+ +.+|++|+.|+.|++|+++. ...++++.
T Consensus 144 ~-----------~~~~h~~~v~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~-~~~~~~~~ 206 (316)
T 3bg1_A 144 K-----------INNAHTIGCNAVSWA-----PAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEE-DGQWKEEQ 206 (316)
T ss_dssp C-----------BTTSSSSCBCCCEEC-----CCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECT-TSCEEEEE
T ss_pred e-----------eeccccCCcceEEEc-----cccCCccccccccccCccccceEEEecCCCeEEEEEeCC-CCccceee
Confidence 0 012344578888888 54 47899999999999996532 22334677
Q ss_pred eeecccCceeEEEEcCCC----CEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcE
Q 021036 237 SYNAHDQVVTGLAWAFDG----CCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLV 312 (318)
Q Consensus 237 ~~~~h~~~v~~~~~~~~~----~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~ 312 (318)
.+.+|...|.+++|+|++ .+|++++.|++|++|++.+........ ..+..|...|.+++|+|++++
T Consensus 207 ~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~----------~~~~~~~~~v~~v~~sp~g~~ 276 (316)
T 3bg1_A 207 KLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSP----------KLLHKFNDVVWHVSWSITANI 276 (316)
T ss_dssp CCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBC----------CEEEECSSCEEEEEECTTTCC
T ss_pred ecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhh----------hhhhcCCCcEEEEEEcCCCCE
Confidence 888999999999999986 789999999999999987631100000 001124568999999999999
Q ss_pred EEEEe
Q 021036 313 VAMVQ 317 (318)
Q Consensus 313 l~~~~ 317 (318)
||++.
T Consensus 277 las~~ 281 (316)
T 3bg1_A 277 LAVSG 281 (316)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 99874
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=243.20 Aligned_cols=232 Identities=21% Similarity=0.302 Sum_probs=184.5
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccc-------------------c----CCCCc
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVL-------------------R----LSSKK 72 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~-------------------~----~~~~~ 72 (318)
+...+++++.|+++++||+..... ..+.. +... +.+++|+|++ . +..|.
T Consensus 314 ~~~~l~t~~~d~~i~~w~~~~~~~-~~~~~----~~~~---v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~ 385 (577)
T 2ymu_A 314 DGQTIASASDDKTVKLWNRNGQHL-QTLTG----HSSS---VWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS 385 (577)
T ss_dssp TSSEEEEEETTSCEEEEETTSCEE-EEECC----CSSC---EEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCS
T ss_pred CCCEEEEEeCCCeEEEEeCCCCee-EEEeC----CCCC---EEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCC
Confidence 445689999999999999865432 22211 1111 2223333332 1 44688
Q ss_pred ccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEE
Q 021036 73 YPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVT 152 (318)
Q Consensus 73 ~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s 152 (318)
.+|.++++++++++|++++.|+.|++|+.. .+.+..+.+|...|++++| ++++++|++
T Consensus 386 ~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~---------------~~~~~~~~~~~~~v~~~~~-------s~d~~~l~~ 443 (577)
T 2ymu_A 386 SSVRGVAFSPDGQTIASASDDKTVKLWNRN---------------GQLLQTLTGHSSSVWGVAF-------SPDDQTIAS 443 (577)
T ss_dssp SCEEEEEECTTSSCEEEEETTSEEEEECTT---------------CCEEEEEECCSSCEEEEEE-------CTTSSEEEE
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEeCC---------------CCEEEEecCCCCCeEEEEE-------CCCCCEEEE
Confidence 899999999999999999999999999964 3466778899999999999 899999999
Q ss_pred EeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCee
Q 021036 153 GSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKF 232 (318)
Q Consensus 153 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~ 232 (318)
++.|++|++||.. ++.+..+.. |...|.+++|+ |++++|++++.|+.|++|+ . +++
T Consensus 444 ~~~d~~v~~w~~~-~~~~~~~~~--------------~~~~v~~~~~s-----pd~~~las~~~d~~i~iw~--~-~~~- 499 (577)
T 2ymu_A 444 ASDDKTVKLWNRN-GQLLQTLTG--------------HSSSVRGVAFS-----PDGQTIASASDDKTVKLWN--R-NGQ- 499 (577)
T ss_dssp EETTSEEEEEETT-SCEEEEEEC--------------CSSCEEEEEEC-----TTSCEEEEEETTSEEEEEE--T-TSC-
T ss_pred EcCCCEEEEEECC-CCEEEEEcC--------------CCCCEEEEEEc-----CCCCEEEEEeCCCEEEEEc--C-CCC-
Confidence 9999999999964 455554443 44589999999 9999999999999999995 3 334
Q ss_pred eEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcE
Q 021036 233 DKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLV 312 (318)
Q Consensus 233 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~ 312 (318)
.+..+.+|...|++++|+|+|++|++++.|+.|++||.....+..+ .+|.+.|++++|+|||++
T Consensus 500 -~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~---------------~~h~~~v~~~~fs~dg~~ 563 (577)
T 2ymu_A 500 -LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL---------------TGHSSSVWGVAFSPDGQT 563 (577)
T ss_dssp -EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEE---------------ECCSSCEEEEEECTTSSC
T ss_pred -EEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEE---------------cCCCCCEEEEEEcCCCCE
Confidence 6678899999999999999999999999999999999754444333 346679999999999999
Q ss_pred EEEEe
Q 021036 313 VAMVQ 317 (318)
Q Consensus 313 l~~~~ 317 (318)
|+++.
T Consensus 564 l~s~~ 568 (577)
T 2ymu_A 564 IASAS 568 (577)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99874
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-31 Score=247.30 Aligned_cols=231 Identities=18% Similarity=0.174 Sum_probs=181.5
Q ss_pred cCCCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEe
Q 021036 11 KMKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVG 90 (318)
Q Consensus 11 ~~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g 90 (318)
.+.+.+...+++||.|++|++||+.+......... ..+.+|...|.++++++++++|++|
T Consensus 389 ~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~--------------------~~~~~h~~~v~~v~~s~~g~~l~sg 448 (694)
T 3dm0_A 389 ATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQ--------------------RRLTGHSHFVEDVVLSSDGQFALSG 448 (694)
T ss_dssp ECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEE--------------------EEEECCSSCEEEEEECTTSSEEEEE
T ss_pred EecCCCCCEEEEEeCCCcEEEEEccCCCccccccc--------------------ceecCCCCcEEEEEECCCCCEEEEE
Confidence 34445567799999999999999987543221111 1234566666677777777999999
Q ss_pred cCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCccee
Q 021036 91 GRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQ 170 (318)
Q Consensus 91 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 170 (318)
+.||.|+|||+.++ +..+.+.+|...|.+++| ++++++|++|+.|++|++||.......
T Consensus 449 s~Dg~v~vwd~~~~--------------~~~~~~~~h~~~v~~~~~-------s~~~~~l~s~s~D~~i~iwd~~~~~~~ 507 (694)
T 3dm0_A 449 SWDGELRLWDLAAG--------------VSTRRFVGHTKDVLSVAF-------SLDNRQIVSASRDRTIKLWNTLGECKY 507 (694)
T ss_dssp ETTSEEEEEETTTT--------------EEEEEEECCSSCEEEEEE-------CTTSSCEEEEETTSCEEEECTTSCEEE
T ss_pred eCCCcEEEEECCCC--------------cceeEEeCCCCCEEEEEE-------eCCCCEEEEEeCCCEEEEEECCCCcce
Confidence 99999999999884 456778899999999999 899999999999999999998654332
Q ss_pred eeecccccccccceeeeeecccceeEEEEeeccCCCCc--eEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEE
Q 021036 171 KSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRL--MLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGL 248 (318)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~--~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~ 248 (318)
...... ..|...|.+++|+ |++ ..+++|+.|+.|++| |++..+ ....+.+|...|+++
T Consensus 508 ~~~~~~-----------~~h~~~v~~~~~~-----~~~~~~~l~s~s~d~~v~vw--d~~~~~--~~~~~~~h~~~v~~v 567 (694)
T 3dm0_A 508 TISEGG-----------EGHRDWVSCVRFS-----PNTLQPTIVSASWDKTVKVW--NLSNCK--LRSTLAGHTGYVSTV 567 (694)
T ss_dssp EECSST-----------TSCSSCEEEEEEC-----SCSSSCEEEEEETTSCEEEE--ETTTCC--EEEEECCCSSCEEEE
T ss_pred eeccCC-----------CCCCCcEEEEEEe-----CCCCcceEEEEeCCCeEEEE--ECCCCc--EEEEEcCCCCCEEEE
Confidence 221111 2355689999999 775 689999999999999 555655 567788999999999
Q ss_pred EEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 249 AWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 249 ~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
+|+|++++|++++.|++|++||++++....... +...|.+++|+|++.+|+++.
T Consensus 568 ~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~---------------~~~~v~~~~~sp~~~~l~~~~ 621 (694)
T 3dm0_A 568 AVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE---------------ANSVIHALCFSPNRYWLCAAT 621 (694)
T ss_dssp EECTTSSEEEEEETTSBCEEEETTTTEEEECCB---------------CSSCEEEEEECSSSSEEEEEE
T ss_pred EEeCCCCEEEEEeCCCeEEEEECCCCceEEEec---------------CCCcEEEEEEcCCCcEEEEEc
Confidence 999999999999999999999998876543221 123789999999999998764
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-32 Score=233.71 Aligned_cols=230 Identities=11% Similarity=0.031 Sum_probs=167.1
Q ss_pred CccceEEeeCCCceeEeecCCC--CCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCC
Q 021036 16 NTHPTVAASKSKGNSITKIPSN--CCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRS 93 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~d 93 (318)
+...+++++.|+.+++||+.++ +.+..+.. |... +.+++|+|++ ++|++++.|
T Consensus 22 ~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~----h~~~---v~~~~~s~~~------------------~~l~s~s~d 76 (377)
T 3dwl_C 22 QRTEFVTTTATNQVELYEQDGNGWKHARTFSD----HDKI---VTCVDWAPKS------------------NRIVTCSQD 76 (377)
T ss_dssp SSSEEECCCSSSCBCEEEEETTEEEECCCBCC----CSSC---EEEEEECTTT------------------CCEEEEETT
T ss_pred CCCEEEEecCCCEEEEEEccCCceEEEEEEec----CCce---EEEEEEeCCC------------------CEEEEEeCC
Confidence 4556889999999999999876 33333221 2222 3335555555 999999999
Q ss_pred CcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcce---e
Q 021036 94 GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQEL---Q 170 (318)
Q Consensus 94 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~---~ 170 (318)
|.|++||+.+++. ......+.+|...|.+++| ++++++|++++.|+.|++||++.++. .
T Consensus 77 ~~v~vwd~~~~~~-----------~~~~~~~~~~~~~v~~~~~-------~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 138 (377)
T 3dwl_C 77 RNAYVYEKRPDGT-----------WKQTLVLLRLNRAATFVRW-------SPNEDKFAVGSGARVISVCYFEQENDWWVS 138 (377)
T ss_dssp SSEEEC------C-----------CCCEEECCCCSSCEEEEEC-------CTTSSCCEEEESSSCEEECCC-----CCCC
T ss_pred CeEEEEEcCCCCc-----------eeeeeEecccCCceEEEEE-------CCCCCEEEEEecCCeEEEEEECCcccceee
Confidence 9999999987541 1245567789999999999 88999999999999999999998763 3
Q ss_pred eeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCC--------------CeeeEee
Q 021036 171 KSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISC--------------NKFDKVG 236 (318)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~--------------~~~~~~~ 236 (318)
..+.. .|...|.+++|+ |++++|++++.|+.|++|+++... ...+.+.
T Consensus 139 ~~~~~-------------~h~~~v~~~~~~-----~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (377)
T 3dwl_C 139 KHLKR-------------PLRSTILSLDWH-----PNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCA 200 (377)
T ss_dssp EEECS-------------SCCSCEEEEEEC-----TTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEE
T ss_pred eEeec-------------ccCCCeEEEEEc-----CCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhh
Confidence 33332 245689999999 999999999999999999763211 1123555
Q ss_pred eeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 237 SYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 237 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
.+ +|...|.+++|+|++++|++++.|+.|++||+.++....... ..+.+|...|.+++|+|++++|+++
T Consensus 201 ~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----------~~~~~~~~~v~~~~~s~~~~~l~~~ 269 (377)
T 3dwl_C 201 EY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRAL----------ITVKLSQLPLRSLLWANESAIVAAG 269 (377)
T ss_dssp CC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEEC----------CCEECSSSCEEEEEEEETTEEEEEE
T ss_pred cc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceee----------EeecCCCCceEEEEEcCCCCEEEEE
Confidence 66 899999999999999999999999999999998876421000 1233466789999999999999987
Q ss_pred e
Q 021036 317 Q 317 (318)
Q Consensus 317 ~ 317 (318)
.
T Consensus 270 ~ 270 (377)
T 3dwl_C 270 Y 270 (377)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-31 Score=225.04 Aligned_cols=213 Identities=17% Similarity=0.188 Sum_probs=167.8
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhcccccccc---------------ceeeeecccc-----cCCCCcccc
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLH---------------SLAVAWSPVL-----RLSSKKYPV 75 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~w~p~~-----~~~~~~~~v 75 (318)
+...+++++.|+.+++||+.+.+........-.+|...+.. .....|+... .+.+|..+|
T Consensus 108 ~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v 187 (340)
T 1got_B 108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDV 187 (340)
T ss_dssp TSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred CCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCce
Confidence 34568999999999999998764322221111122222111 1123344321 255789999
Q ss_pred cccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeC
Q 021036 76 PQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSS 155 (318)
Q Consensus 76 ~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~ 155 (318)
.++++++++++|++|+.||.|++||+.++. ....+.+|...|++++| +|++++|++|+.
T Consensus 188 ~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~--------------~~~~~~~h~~~v~~v~~-------~p~~~~l~s~s~ 246 (340)
T 1got_B 188 MSLSLAPDTRLFVSGACDASAKLWDVREGM--------------CRQTFTGHESDINAICF-------FPNGNAFATGSD 246 (340)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCS--------------EEEEECCCSSCEEEEEE-------CTTSSEEEEEET
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEECCCCe--------------eEEEEcCCcCCEEEEEE-------cCCCCEEEEEcC
Confidence 999999999999999999999999998854 56778899999999999 899999999999
Q ss_pred CCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEe
Q 021036 156 DGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKV 235 (318)
Q Consensus 156 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 235 (318)
|++|++||+++++....+.... +...|.+++|+ |++.+|++|+.||.|++| +....+ .+
T Consensus 247 d~~v~iwd~~~~~~~~~~~~~~------------~~~~v~~~~~s-----~~g~~l~~g~~d~~i~vw--d~~~~~--~~ 305 (340)
T 1got_B 247 DATCRLFDLRADQELMTYSHDN------------IICGITSVSFS-----KSGRLLLAGYDDFNCNVW--DALKAD--RA 305 (340)
T ss_dssp TSCEEEEETTTTEEEEEECCTT------------CCSCEEEEEEC-----TTSSEEEEEETTSEEEEE--ETTTCC--EE
T ss_pred CCcEEEEECCCCcEEEEEccCC------------cccceEEEEEC-----CCCCEEEEECCCCeEEEE--EcccCc--Ee
Confidence 9999999999887665543211 12368999999 999999999999999999 555555 66
Q ss_pred eeeecccCceeEEEEcCCCCEEEEecCCCcEEEEE
Q 021036 236 GSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWI 270 (318)
Q Consensus 236 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd 270 (318)
..+.+|...|.+++|+|+|.+|++|+.|++|++||
T Consensus 306 ~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 306 GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred eEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 78899999999999999999999999999999996
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-31 Score=227.62 Aligned_cols=244 Identities=18% Similarity=0.201 Sum_probs=172.6
Q ss_pred ceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEE
Q 021036 19 PTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSL 98 (318)
Q Consensus 19 ~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i 98 (318)
.+++| .++++++|++.+++.+..+........... . +. ......+...|.+++|++++++|++|+.||.|++
T Consensus 78 ~la~g-~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~-~---~~---~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~i 149 (393)
T 1erj_A 78 YLATG-CNKTTQVYRVSDGSLVARLSDDSAANKDPE-N---LN---TSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRI 149 (393)
T ss_dssp EEEEE-CBSCEEEEETTTCCEEEEECC------------------------CCCCBEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EEEEE-cCCcEEEEEecCCCEEEEecCccccccccc-c---cc---ccccCCCceeEEEEEECCCCCEEEEEcCCCeEEE
Confidence 34554 578999999998876555433211000000 0 00 0001112234666666777799999999999999
Q ss_pred EEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeeccccc
Q 021036 99 WRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCV 178 (318)
Q Consensus 99 w~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~ 178 (318)
||++++ +.+..+.+|...|.+++| ++++++|++++.|++|++||+++++....+..
T Consensus 150 wd~~~~--------------~~~~~~~~h~~~v~~~~~-------~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~--- 205 (393)
T 1erj_A 150 WDIENR--------------KIVMILQGHEQDIYSLDY-------FPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI--- 205 (393)
T ss_dssp EETTTT--------------EEEEEECCCSSCEEEEEE-------CTTSSEEEEEETTSEEEEEETTTTEEEEEEEC---
T ss_pred EECCCC--------------cEEEEEccCCCCEEEEEE-------cCCCCEEEEecCCCcEEEEECCCCeeEEEEEc---
Confidence 999874 466778999999999999 89999999999999999999999877665542
Q ss_pred ccccceeeeeecccceeEEEEeeccCCC-CceEEEEEeCCCcEEEeeeccCCCeeeEeeee-------ecccCceeEEEE
Q 021036 179 PFSLLKEVVTVNTVPISVLSLILPVQSP-RLMLLAVGKGSGSFDLWKCDISCNKFDKVGSY-------NAHDQVVTGLAW 250 (318)
Q Consensus 179 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~-------~~h~~~v~~~~~ 250 (318)
...+.+++++ | ++.+|++|+.|+.|++| |.+++. .+..+ .+|...|++++|
T Consensus 206 ------------~~~v~~~~~~-----~~~~~~l~~~s~d~~v~iw--d~~~~~--~~~~~~~~~~~~~~h~~~v~~v~~ 264 (393)
T 1erj_A 206 ------------EDGVTTVAVS-----PGDGKYIAAGSLDRAVRVW--DSETGF--LVERLDSENESGTGHKDSVYSVVF 264 (393)
T ss_dssp ------------SSCEEEEEEC-----STTCCEEEEEETTSCEEEE--ETTTCC--EEEEEC------CCCSSCEEEEEE
T ss_pred ------------CCCcEEEEEE-----CCCCCEEEEEcCCCcEEEE--ECCCCc--EEEeecccccCCCCCCCCEEEEEE
Confidence 2368899998 6 89999999999999999 555554 33333 578999999999
Q ss_pred cCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 251 AFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 251 ~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
+|+|++|++++.|++|++||+++.........+... .....+.+|...|.+++|+|++++|++|.
T Consensus 265 ~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~sgs 329 (393)
T 1erj_A 265 TRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG--TCEVTYIGHKDFVLSVATTQNDEYILSGS 329 (393)
T ss_dssp CTTSSEEEEEETTSEEEEEEC-----------------CEEEEEECCSSCEEEEEECGGGCEEEEEE
T ss_pred CCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCC--cceEEEecccCcEEEEEECCCCCEEEEEe
Confidence 999999999999999999999764332111000000 01123446888999999999999999874
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-31 Score=224.86 Aligned_cols=200 Identities=18% Similarity=0.175 Sum_probs=158.4
Q ss_pred CCCCcc-cccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCC
Q 021036 68 LSSKKY-PVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNP 146 (318)
Q Consensus 68 ~~~~~~-~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~ 146 (318)
+.+|.. .|.+++|+|++++|++|+.|+.|+||+++++... .......+|...|.+++| +++
T Consensus 11 ~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~-----------~~~~~~~~h~~~v~~~~~-------sp~ 72 (345)
T 3fm0_A 11 VPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWI-----------CKSVLSEGHQRTVRKVAW-------SPC 72 (345)
T ss_dssp ECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEE-----------EEEEECSSCSSCEEEEEE-------CTT
T ss_pred ecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcce-----------eeeeeccccCCcEEEEEE-------CCC
Confidence 334544 5666666666699999999999999999875421 112234689999999999 899
Q ss_pred CcEEEEEeCCCcEEEEECCCcc--eeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEee
Q 021036 147 QVLLVTGSSDGSVRIWDGYIQE--LQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWK 224 (318)
Q Consensus 147 ~~~l~s~~~d~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~ 224 (318)
+++|++|+.|+++++||+..+. +...+. +|...|.+++|+ |++++|++|+.|+.|++|+
T Consensus 73 g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~--------------~h~~~v~~v~~s-----p~~~~l~s~s~D~~v~iwd 133 (345)
T 3fm0_A 73 GNYLASASFDATTCIWKKNQDDFECVTTLE--------------GHENEVKSVAWA-----PSGNLLATCSRDKSVWVWE 133 (345)
T ss_dssp SSEEEEEETTSCEEEEEECCC-EEEEEEEC--------------CCSSCEEEEEEC-----TTSSEEEEEETTSCEEEEE
T ss_pred CCEEEEEECCCcEEEEEccCCCeEEEEEcc--------------CCCCCceEEEEe-----CCCCEEEEEECCCeEEEEE
Confidence 9999999999999999988663 333343 345589999999 9999999999999999996
Q ss_pred eccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEE
Q 021036 225 CDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGM 304 (318)
Q Consensus 225 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v 304 (318)
++... ....+..+.+|...|.+++|+|++.+|++++.|++|++||+..+...... .+.+|...|+++
T Consensus 134 ~~~~~-~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~------------~~~~h~~~v~~l 200 (345)
T 3fm0_A 134 VDEED-EYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCA------------TLEGHESTVWSL 200 (345)
T ss_dssp ECTTS-CEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEE------------EECCCSSCEEEE
T ss_pred CCCCC-CeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEE------------EecCCCCceEEE
Confidence 54322 23356678889999999999999999999999999999999876533211 233467799999
Q ss_pred EEcCCCcEEEEEe
Q 021036 305 AVSPGNLVVAMVQ 317 (318)
Q Consensus 305 ~~sp~~~~l~~~~ 317 (318)
+|+|+|++|++|.
T Consensus 201 ~~sp~g~~l~s~s 213 (345)
T 3fm0_A 201 AFDPSGQRLASCS 213 (345)
T ss_dssp EECTTSSEEEEEE
T ss_pred EECCCCCEEEEEe
Confidence 9999999999974
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-31 Score=233.84 Aligned_cols=205 Identities=14% Similarity=0.126 Sum_probs=153.0
Q ss_pred ccCcCCCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEE
Q 021036 8 TSNKMKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSIL 87 (318)
Q Consensus 8 ~~~~~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l 87 (318)
++.++.+.+...+++|+.||+|++||+.+++....+.. .+|.+. +.+++|+|.. +++|
T Consensus 123 ~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~--~gH~~~---V~~l~f~p~~-----------------~~~l 180 (435)
T 4e54_B 123 TSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKG--IGAGGS---ITGLKFNPLN-----------------TNQF 180 (435)
T ss_dssp EEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECC--CSSSCC---CCEEEECSSC-----------------TTEE
T ss_pred EEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEc--cCCCCC---EEEEEEeCCC-----------------CCEE
Confidence 34455566677899999999999999988765333322 124443 3346666543 5899
Q ss_pred EEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCc
Q 021036 88 AVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQ 167 (318)
Q Consensus 88 ~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 167 (318)
++|+.||+|++||++++. .........+...+.+++| ++++.+|++|+.||.|++||++.
T Consensus 181 ~s~s~D~~v~iwd~~~~~------------~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~g~~dg~i~~wd~~~- 240 (435)
T 4e54_B 181 YASSMEGTTRLQDFKGNI------------LRVFASSDTINIWFCSLDV-------SASSRMVVTGDNVGNVILLNMDG- 240 (435)
T ss_dssp EEECSSSCEEEEETTSCE------------EEEEECCSSCSCCCCCEEE-------ETTTTEEEEECSSSBEEEEESSS-
T ss_pred EEEeCCCEEEEeeccCCc------------eeEEeccCCCCccEEEEEE-------CCCCCEEEEEeCCCcEeeeccCc-
Confidence 999999999999998643 1222222334556889999 89999999999999999999864
Q ss_pred ceeeeecccccccccceeeeeecccceeEEEEeeccCCCCce-EEEEEeCCCcEEEeeeccCCCee-eEeeeeecccCce
Q 021036 168 ELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLM-LLAVGKGSGSFDLWKCDISCNKF-DKVGSYNAHDQVV 245 (318)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~-~~~~~~~~h~~~v 245 (318)
+.+..+.. |...|.+++|+ |++. +|++|+.|+.|++||+ +..+. ..+....+|...|
T Consensus 241 ~~~~~~~~--------------h~~~v~~v~~~-----p~~~~~~~s~s~d~~v~iwd~--~~~~~~~~~~~~~~h~~~v 299 (435)
T 4e54_B 241 KELWNLRM--------------HKKKVTHVALN-----PCCDWFLATASVDQTVKIWDL--RQVRGKASFLYSLPHRHPV 299 (435)
T ss_dssp CBCCCSBC--------------CSSCEEEEEEC-----TTCSSEEEEEETTSBCCEEET--TTCCSSSCCSBCCBCSSCE
T ss_pred ceeEEEec--------------ccceEEeeeec-----CCCceEEEEecCcceeeEEec--ccccccceEEEeeeccccc
Confidence 34444443 45589999999 7765 8889999999999954 33321 1223346799999
Q ss_pred eEEEEcCCCCEEEEecCCCcEEEEEecCCc
Q 021036 246 TGLAWAFDGCCLYSCSQDNFVRSWIFHGNS 275 (318)
Q Consensus 246 ~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 275 (318)
++++|+|+|.+|++++.|++|++||+.++.
T Consensus 300 ~~~~~spdg~~l~s~~~D~~i~iwd~~~~~ 329 (435)
T 4e54_B 300 NAACFSPDGARLLTTDQKSEIRVYSASQWD 329 (435)
T ss_dssp EECCBCTTSSEEEEEESSSCEEEEESSSSS
T ss_pred cceeECCCCCeeEEEcCCCEEEEEECCCCc
Confidence 999999999999999999999999998644
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-31 Score=219.63 Aligned_cols=200 Identities=17% Similarity=0.182 Sum_probs=157.8
Q ss_pred CCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCC--
Q 021036 68 LSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSN-- 145 (318)
Q Consensus 68 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~-- 145 (318)
+.+|...|.+++|+++|++|++|+.|++|+||++..+. .+.+..+.+|.++|++++| ++
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~------------~~~~~~l~gH~~~V~~v~~-------s~~~ 65 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET------------HKLIDTLTGHEGPVWRVDW-------AHPK 65 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC------------BCCCEEECCCSSCEEEEEE-------CCGG
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC------------cEEEEEEccccCCeEEEEe-------cCCC
Confidence 45678888888888888999999999999999997533 3456788999999999999 54
Q ss_pred CCcEEEEEeCCCcEEEEECCCcc--eeeeecccccccccceeeeeecccceeEEEEeeccCCCC--ceEEEEEeCCCcEE
Q 021036 146 PQVLLVTGSSDGSVRIWDGYIQE--LQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPR--LMLLAVGKGSGSFD 221 (318)
Q Consensus 146 ~~~~l~s~~~d~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~--~~~l~~~~~dg~i~ 221 (318)
++++|++|+.|++|++||+++++ ....+. .|...|.+++|+ |+ +.+|++++.|+.|+
T Consensus 66 ~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~--------------~h~~~v~~v~~~-----p~~~g~~l~s~s~d~~v~ 126 (297)
T 2pm7_B 66 FGTILASCSYDGKVMIWKEENGRWSQIAVHA--------------VHSASVNSVQWA-----PHEYGPMLLVASSDGKVS 126 (297)
T ss_dssp GCSEEEEEETTTEEEEEEBSSSCBCCCEEEC--------------CCSSCEEEEEEC-----CGGGCSEEEEEETTSEEE
T ss_pred cCCEEEEEcCCCEEEEEEcCCCceEEEEEee--------------cCCCceeEEEeC-----cCCCCcEEEEEECCCcEE
Confidence 37899999999999999998764 222222 345589999999 76 78999999999999
Q ss_pred EeeeccCCCeeeEeeeeecccCceeEEEEcCC-------------CCEEEEecCCCcEEEEEecCCceeeeecCCCCCCc
Q 021036 222 LWKCDISCNKFDKVGSYNAHDQVVTGLAWAFD-------------GCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGL 288 (318)
Q Consensus 222 vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-------------~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~ 288 (318)
+|+++ .........+.+|...|.+++|+|+ +++|++|+.|++|++||++++......
T Consensus 127 ~wd~~--~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~-------- 196 (297)
T 2pm7_B 127 VVEFK--ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL-------- 196 (297)
T ss_dssp EEEBC--SSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEE--------
T ss_pred EEEec--CCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEE--------
Confidence 99654 3321123457789999999999997 569999999999999999875421100
Q ss_pred cccccCCCcceeeeEEEEcCCC---cEEEEEe
Q 021036 289 QSCTDLPDAFVSCLGMAVSPGN---LVVAMVQ 317 (318)
Q Consensus 289 ~~~~~~~~h~~~v~~v~~sp~~---~~l~~~~ 317 (318)
...+.+|...|.+++|+|++ .+||++.
T Consensus 197 --~~~l~~H~~~V~~v~~sp~~~~~~~las~s 226 (297)
T 2pm7_B 197 --ESTLEGHSDWVRDVAWSPTVLLRSYMASVS 226 (297)
T ss_dssp --EEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred --EEEecCCCCceEEEEECCCCCCceEEEEEE
Confidence 01334577899999999984 8899874
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-32 Score=239.98 Aligned_cols=245 Identities=13% Similarity=0.051 Sum_probs=177.1
Q ss_pred ccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcE
Q 021036 17 THPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKV 96 (318)
Q Consensus 17 ~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i 96 (318)
...+++++.|++|++||+.++++...... . .. .|...+.+|..+|++++|+++ ..|++|+.||+|
T Consensus 225 ~~~LAs~s~DgtvrlWd~~~~~~~~~~~~-~--~~-----------~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV 289 (524)
T 2j04_B 225 VGCLSFVSQEGTINFLEIIDNATDVHVFK-M--CE-----------KPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFV 289 (524)
T ss_dssp SCEEEEEETTSCEEEEECCCCSSSSSEEE-C--CC-----------SCSEEECCTTTCEEEEEESSS-SEEEEEETTSEE
T ss_pred CceEEEEecCCeEEEEEcCCCccccccce-e--ec-----------CceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEE
Confidence 35689999999999999987754311000 0 00 011123455566667776654 489999999999
Q ss_pred EEEEccCCccccccccccCCceeEEeeeccccccEEEE--EeeeecCCCCCCC-cEEEEEeCCCcEEEEECCCcceeeee
Q 021036 97 SLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSI--SLAVLSSDSSNPQ-VLLVTGSSDGSVRIWDGYIQELQKSA 173 (318)
Q Consensus 97 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~--~~~p~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~ 173 (318)
++||+++++. +...+.+|...|+++ .| ++++ .+|+||+.|++|+|||++++++...+
T Consensus 290 ~lWD~~~~~~-------------~~~~~~~H~~~V~sv~~~~-------s~~g~~~laS~S~D~tvklWD~~~~~~~~~~ 349 (524)
T 2j04_B 290 AEFDLTDPEV-------------PSFYDQVHDSYILSVSTAY-------SDFEDTVVSTVAVDGYFYIFNPKDIATTKTT 349 (524)
T ss_dssp EEEETTBCSS-------------CSEEEECSSSCEEEEEEEC-------CTTSCCEEEEEETTSEEEEECGGGHHHHCEE
T ss_pred EEEECCCCCC-------------ceEEeecccccEEEEEEEc-------CCCCCeEEEEeccCCeEEEEECCCCCccccc
Confidence 9999987532 334578999999999 56 7777 89999999999999999988766555
Q ss_pred cccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCC
Q 021036 174 EAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFD 253 (318)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 253 (318)
..+.. ...|.+++|+ |++..|++++.|++|++| +.+... .+..+.+|.+.|++++|+|+
T Consensus 350 ~~~~~------------~~~v~~v~fs-----p~~~~l~s~~~d~tv~lw--d~~~~~--~~~~l~gH~~~V~sva~Sp~ 408 (524)
T 2j04_B 350 VSRFR------------GSNLVPVVYC-----PQIYSYIYSDGASSLRAV--PSRAAF--AVHPLVSRETTITAIGVSRL 408 (524)
T ss_dssp EEECS------------CCSCCCEEEE-----TTTTEEEEECSSSEEEEE--ETTCTT--CCEEEEECSSCEEEEECCSS
T ss_pred ccccc------------cCcccceEeC-----CCcCeEEEeCCCCcEEEE--ECcccc--cceeeecCCCceEEEEeCCC
Confidence 43321 1247889999 999999999999999999 556655 45667889999999999999
Q ss_pred CCEEEEecCCCcEEEEEecCCcee---------------eeecCCCCCCcc---------------ccccCCCcceeeeE
Q 021036 254 GCCLYSCSQDNFVRSWIFHGNSLS---------------QVSIPTNTPGLQ---------------SCTDLPDAFVSCLG 303 (318)
Q Consensus 254 ~~~l~s~~~d~~v~iwd~~~~~~~---------------~~~~~~~~~~~~---------------~~~~~~~h~~~v~~ 303 (318)
|++|++|+.|++|++||+..+... .+.+.+.+..+. ....+.+|...|.+
T Consensus 409 g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~ 488 (524)
T 2j04_B 409 HPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITC 488 (524)
T ss_dssp CCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCC
T ss_pred CCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEE
Confidence 999999999999999997543211 222333322110 11235589999999
Q ss_pred EEEcCCCc---EEEEEe
Q 021036 304 MAVSPGNL---VVAMVQ 317 (318)
Q Consensus 304 v~~sp~~~---~l~~~~ 317 (318)
|+|+|++. ++|+|.
T Consensus 489 Vafsp~~~~~~~lAsg~ 505 (524)
T 2j04_B 489 TKWNETSAGGKCYAFSN 505 (524)
T ss_dssp EEECCSTTTTTEEEEEC
T ss_pred EECCCCCCccHHHHhhc
Confidence 99999954 899874
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-30 Score=216.52 Aligned_cols=236 Identities=19% Similarity=0.171 Sum_probs=186.7
Q ss_pred ccceEEeeCCCceeEeecCCCCCCCceecch-hccccccccceeeeeccccc--------------------------CC
Q 021036 17 THPTVAASKSKGNSITKIPSNCCLPLITADQ-YASRSAMLHSLAVAWSPVLR--------------------------LS 69 (318)
Q Consensus 17 ~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~w~p~~~--------------------------~~ 69 (318)
...+++++ |+.+++||+.+++....+.... ..+... +.+++|+|++. +.
T Consensus 63 ~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 138 (337)
T 1gxr_A 63 TRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNY---IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELT 138 (337)
T ss_dssp SSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSB---EEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEE
T ss_pred CcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCc---EEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecc
Confidence 34456666 9999999998876544433211 112222 33355555432 23
Q ss_pred CCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcE
Q 021036 70 SKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVL 149 (318)
Q Consensus 70 ~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~ 149 (318)
.|...|.++++++++++|++++.||.|++||++++ +.+..+..|...|.+++| ++++++
T Consensus 139 ~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~--------------~~~~~~~~~~~~i~~~~~-------~~~~~~ 197 (337)
T 1gxr_A 139 SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ--------------TLVRQFQGHTDGASCIDI-------SNDGTK 197 (337)
T ss_dssp CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--------------EEEEEECCCSSCEEEEEE-------CTTSSE
T ss_pred cCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC--------------ceeeeeecccCceEEEEE-------CCCCCE
Confidence 46677899999999999999999999999999874 466778889999999999 889999
Q ss_pred EEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCC
Q 021036 150 LVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISC 229 (318)
Q Consensus 150 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~ 229 (318)
|++++.|+.|++||+++++....+. +...+.+++|+ |+++++++++.++.|++| +.+.
T Consensus 198 l~~~~~dg~i~~~d~~~~~~~~~~~---------------~~~~v~~~~~s-----~~~~~l~~~~~~~~i~~~--~~~~ 255 (337)
T 1gxr_A 198 LWTGGLDNTVRSWDLREGRQLQQHD---------------FTSQIFSLGYC-----PTGEWLAVGMESSNVEVL--HVNK 255 (337)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEE---------------CSSCEEEEEEC-----TTSSEEEEEETTSCEEEE--ETTS
T ss_pred EEEEecCCcEEEEECCCCceEeeec---------------CCCceEEEEEC-----CCCCEEEEEcCCCcEEEE--ECCC
Confidence 9999999999999999887666543 23478999999 999999999999999999 4555
Q ss_pred CeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCC
Q 021036 230 NKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPG 309 (318)
Q Consensus 230 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 309 (318)
.+ ...+..|...|.+++|+|++++|++++.||.|++||+.++....... |...+.+++|+|+
T Consensus 256 ~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~---------------~~~~v~~~~~s~~ 317 (337)
T 1gxr_A 256 PD---KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK---------------ESSSVLSCDISVD 317 (337)
T ss_dssp SC---EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---------------CSSCEEEEEECTT
T ss_pred CC---eEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEec---------------CCCcEEEEEECCC
Confidence 44 23567899999999999999999999999999999998876653332 2348899999999
Q ss_pred CcEEEEEe
Q 021036 310 NLVVAMVQ 317 (318)
Q Consensus 310 ~~~l~~~~ 317 (318)
+++|+++.
T Consensus 318 ~~~l~~~~ 325 (337)
T 1gxr_A 318 DKYIVTGS 325 (337)
T ss_dssp SCEEEEEE
T ss_pred CCEEEEec
Confidence 99999874
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-30 Score=225.37 Aligned_cols=229 Identities=17% Similarity=0.156 Sum_probs=172.7
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCc
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGK 95 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~ 95 (318)
+...+++|+.|++|++||+.+++.+..+.. |... +.+++|+|++ ++|++|+.|+.
T Consensus 134 dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~----h~~~---v~~~~~~p~~------------------~~l~s~s~d~~ 188 (393)
T 1erj_A 134 DGKFLATGAEDRLIRIWDIENRKIVMILQG----HEQD---IYSLDYFPSG------------------DKLVSGSGDRT 188 (393)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEEEECC----CSSC---EEEEEECTTS------------------SEEEEEETTSE
T ss_pred CCCEEEEEcCCCeEEEEECCCCcEEEEEcc----CCCC---EEEEEEcCCC------------------CEEEEecCCCc
Confidence 445689999999999999988765333321 2222 3335555555 99999999999
Q ss_pred EEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCC-CCcEEEEEeCCCcEEEEECCCcceeeeec
Q 021036 96 VSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSN-PQVLLVTGSSDGSVRIWDGYIQELQKSAE 174 (318)
Q Consensus 96 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 174 (318)
|++||+++++ ....+. +...+.+++| ++ ++++|++|+.|+.|++||+++++....+.
T Consensus 189 v~iwd~~~~~--------------~~~~~~-~~~~v~~~~~-------~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~ 246 (393)
T 1erj_A 189 VRIWDLRTGQ--------------CSLTLS-IEDGVTTVAV-------SPGDGKYIAAGSLDRAVRVWDSETGFLVERLD 246 (393)
T ss_dssp EEEEETTTTE--------------EEEEEE-CSSCEEEEEE-------CSTTCCEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred EEEEECCCCe--------------eEEEEE-cCCCcEEEEE-------ECCCCCEEEEEcCCCcEEEEECCCCcEEEeec
Confidence 9999999854 333333 5678999999 66 88999999999999999999987766553
Q ss_pred ccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCC--------eeeEeeeeecccCcee
Q 021036 175 AHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCN--------KFDKVGSYNAHDQVVT 246 (318)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~--------~~~~~~~~~~h~~~v~ 246 (318)
... .....|...|.+++|+ |++.+|++|+.|+.|++||+..... .......+.+|...|.
T Consensus 247 ~~~-------~~~~~h~~~v~~v~~~-----~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 314 (393)
T 1erj_A 247 SEN-------ESGTGHKDSVYSVVFT-----RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVL 314 (393)
T ss_dssp -------------CCCSSCEEEEEEC-----TTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEE
T ss_pred ccc-------cCCCCCCCCEEEEEEC-----CCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEE
Confidence 221 1113567789999999 9999999999999999996532111 0123456788999999
Q ss_pred EEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcC------CCcEEEEEe
Q 021036 247 GLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSP------GNLVVAMVQ 317 (318)
Q Consensus 247 ~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp------~~~~l~~~~ 317 (318)
+++|+|++.+|++|+.|+.|++||+.++.... .+.+|...|.+++|++ ++.+||+|.
T Consensus 315 ~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~--------------~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs 377 (393)
T 1erj_A 315 SVATTQNDEYILSGSKDRGVLFWDKKSGNPLL--------------MLQGHRNSVISVAVANGSSLGPEYNVFATGS 377 (393)
T ss_dssp EEEECGGGCEEEEEETTSEEEEEETTTCCEEE--------------EEECCSSCEEEEEECSSCTTCTTCEEEEEEE
T ss_pred EEEECCCCCEEEEEeCCCeEEEEECCCCeEEE--------------EECCCCCCEEEEEecCCcCcCCCCCEEEEEC
Confidence 99999999999999999999999998876543 1234666899999986 688999874
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-30 Score=217.87 Aligned_cols=194 Identities=21% Similarity=0.259 Sum_probs=166.9
Q ss_pred cCCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCC
Q 021036 67 RLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNP 146 (318)
Q Consensus 67 ~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~ 146 (318)
.+.+|..+|.++++++++++|++|+.||.|++|+..+++ ....+.+|...|.+++| +++
T Consensus 18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~--------------~~~~~~~h~~~v~~~~~-------~~~ 76 (312)
T 4ery_A 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--------------FEKTISGHKLGISDVAW-------SSD 76 (312)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC--------------EEEEECCCSSCEEEEEE-------CTT
T ss_pred EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc--------------cchhhccCCCceEEEEE-------cCC
Confidence 456788888888888888999999999999999998743 55678899999999999 899
Q ss_pred CcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeec
Q 021036 147 QVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCD 226 (318)
Q Consensus 147 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~ 226 (318)
+++|++++.|+.|++||+++++.+..+..+. ..|.+++|+ |++++|++|+.|+.|++| |
T Consensus 77 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~--------------~~v~~~~~~-----~~~~~l~s~~~d~~i~iw--d 135 (312)
T 4ery_A 77 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHS--------------NYVFCCNFN-----PQSNLIVSGSFDESVRIW--D 135 (312)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEEEEECCS--------------SCEEEEEEC-----SSSSEEEEEETTSCEEEE--E
T ss_pred CCEEEEECCCCEEEEEECCCCcEEEEEcCCC--------------CCEEEEEEc-----CCCCEEEEEeCCCcEEEE--E
Confidence 9999999999999999999988777665544 489999999 999999999999999999 5
Q ss_pred cCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEE
Q 021036 227 ISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAV 306 (318)
Q Consensus 227 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 306 (318)
.++++ .+..+..|..+|.+++|+|++.+|++++.|+.|++||++++......... +...+..++|
T Consensus 136 ~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-------------~~~~~~~~~~ 200 (312)
T 4ery_A 136 VKTGK--CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------------DNPPVSFVKF 200 (312)
T ss_dssp TTTCC--EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCS-------------SCCCEEEEEE
T ss_pred CCCCE--EEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEecc-------------CCCceEEEEE
Confidence 56665 66778889999999999999999999999999999999887654432222 2347899999
Q ss_pred cCCCcEEEEEe
Q 021036 307 SPGNLVVAMVQ 317 (318)
Q Consensus 307 sp~~~~l~~~~ 317 (318)
+|++++|+++.
T Consensus 201 ~~~~~~l~~~~ 211 (312)
T 4ery_A 201 SPNGKYILAAT 211 (312)
T ss_dssp CTTSSEEEEEE
T ss_pred CCCCCEEEEEc
Confidence 99999999874
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-31 Score=230.35 Aligned_cols=184 Identities=20% Similarity=0.336 Sum_probs=162.7
Q ss_pred CCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCC
Q 021036 68 LSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQ 147 (318)
Q Consensus 68 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~ 147 (318)
+.+|..+|++++|+|++++|++|+.||+|++||+.+++ ....+.+|.+.|.+++| ++++
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~--------------~~~~l~~h~~~V~~v~~-------~~~~ 162 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD--------------FERTLKGHTDSVQDISF-------DHSG 162 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC--------------CCEEECCCSSCEEEEEE-------CTTS
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--------------EEEEEeccCCcEEEEEE-------cCCC
Confidence 56799999999999999999999999999999999854 45678999999999999 8999
Q ss_pred cEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeecc
Q 021036 148 VLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDI 227 (318)
Q Consensus 148 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 227 (318)
++|++|+.|++|++||+.+++++..+..|. ..|.+++|+ |++++|++|+.|+.|++| |.
T Consensus 163 ~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~--------------~~V~~v~~~-----p~~~~l~s~s~D~~i~~w--d~ 221 (410)
T 1vyh_C 163 KLLASCSADMTIKLWDFQGFECIRTMHGHD--------------HNVSSVSIM-----PNGDHIVSASRDKTIKMW--EV 221 (410)
T ss_dssp SEEEEEETTSCCCEEETTSSCEEECCCCCS--------------SCEEEEEEC-----SSSSEEEEEETTSEEEEE--ET
T ss_pred CEEEEEeCCCeEEEEeCCCCceeEEEcCCC--------------CCEEEEEEe-----CCCCEEEEEeCCCeEEEE--EC
Confidence 999999999999999999888877766554 489999999 999999999999999999 56
Q ss_pred CCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEc
Q 021036 228 SCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVS 307 (318)
Q Consensus 228 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s 307 (318)
+++. .+..+.+|...|.++.|+|++.+|++|+.|++|++||+.++.... .+.+|...|.+++|+
T Consensus 222 ~~~~--~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~--------------~~~~h~~~v~~~~~~ 285 (410)
T 1vyh_C 222 QTGY--CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKA--------------ELREHRHVVECISWA 285 (410)
T ss_dssp TTCC--EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE--------------EECCCSSCEEEEEEC
T ss_pred CCCc--EEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceee--------------EecCCCceEEEEEEc
Confidence 6665 677889999999999999999999999999999999998866543 223355689999999
Q ss_pred CC
Q 021036 308 PG 309 (318)
Q Consensus 308 p~ 309 (318)
|+
T Consensus 286 ~~ 287 (410)
T 1vyh_C 286 PE 287 (410)
T ss_dssp CS
T ss_pred Cc
Confidence 96
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.5e-31 Score=226.30 Aligned_cols=210 Identities=17% Similarity=0.141 Sum_probs=161.6
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeeccccc------------------------CCCCcc
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLR------------------------LSSKKY 73 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~------------------------~~~~~~ 73 (318)
..+++++.|++|++||+.+++...........|... +.+++|+|++. +..|..
T Consensus 106 ~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~---V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~ 182 (357)
T 4g56_B 106 KGILVASDSGAVELWEILEKESLLVNKFAKYEHDDI---VKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSS 182 (357)
T ss_dssp TEEEEEETTSCEEEC--------CCCCEEECCCSSC---EEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred CCEEEEECCCEEEEeeccccceeEEEeeccCCCCCC---EEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCC
Confidence 457899999999999999887655544333345554 44577777653 457888
Q ss_pred cccccCCCCCc-cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCC-CcEEE
Q 021036 74 PVPQNGSSNWF-SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNP-QVLLV 151 (318)
Q Consensus 74 ~v~~~~~s~~~-~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~-~~~l~ 151 (318)
.|.++++++++ .++++++.||.|++||+++++.. ....+..|...+.+++| +|+ +.+|+
T Consensus 183 ~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~------------~~~~~~~~~~~v~~v~~-------sp~~~~~la 243 (357)
T 4g56_B 183 EVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPA------------TRIDFCASDTIPTSVTW-------HPEKDDTFA 243 (357)
T ss_dssp CEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCB------------CBCCCTTCCSCEEEEEE-------CTTSTTEEE
T ss_pred CEEEEEEccCCCceeeeeccCCceEEEECCCCcee------------eeeeeccccccccchhh-------hhcccceEE
Confidence 99999999986 58899999999999999986532 22234567788999999 655 57899
Q ss_pred EEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCc-eEEEEEeCCCcEEEeeeccCCC
Q 021036 152 TGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRL-MLLAVGKGSGSFDLWKCDISCN 230 (318)
Q Consensus 152 s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~-~~l~~~~~dg~i~vw~~~~~~~ 230 (318)
+|+.|+.|++||+++++....+..+. ..|++++|+ |++ .+|++|+.|++|++| |.+++
T Consensus 244 ~g~~d~~i~~wd~~~~~~~~~~~~~~--------------~~v~~l~~s-----p~~~~~lasgs~D~~i~iw--d~~~~ 302 (357)
T 4g56_B 244 CGDETGNVSLVNIKNPDSAQTSAVHS--------------QNITGLAYS-----YHSSPFLASISEDCTVAVL--DADFS 302 (357)
T ss_dssp EEESSSCEEEEESSCGGGCEEECCCS--------------SCEEEEEEC-----SSSSCCEEEEETTSCEEEE--CTTSC
T ss_pred EeecccceeEEECCCCcEeEEEeccc--------------eeEEEEEEc-----CCCCCEEEEEeCCCEEEEE--ECCCC
Confidence 99999999999999988877766554 489999999 776 689999999999999 56666
Q ss_pred eeeEeeeeecccCceeEEEEcC-CCCEEEEecCCCcEEEEEecC
Q 021036 231 KFDKVGSYNAHDQVVTGLAWAF-DGCCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 231 ~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~ 273 (318)
+ .+ ...+|...|++++|+| ++.+|++++.|++|++|++..
T Consensus 303 ~--~~-~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 303 E--VF-RDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp E--EE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred c--Ee-EECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence 5 33 3457999999999999 789999999999999999965
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=4.5e-30 Score=220.39 Aligned_cols=235 Identities=17% Similarity=0.200 Sum_probs=176.8
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCc
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGK 95 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~ 95 (318)
+...+++++.|+.|++||+..+........ ..|... +.+++|+|.. ++++|++|+.||.
T Consensus 22 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~~h~~~---v~~~~~~~~~----------------~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 22 YGKRLATCSSDKTIKIFEVEGETHKLIDTL--TGHEGP---VWRVDWAHPK----------------FGTILASCSYDGK 80 (379)
T ss_dssp SSSEEEEEETTSCEEEEEEETTEEEEEEEE--CCCSSC---EEEEEECCGG----------------GCSEEEEEETTSC
T ss_pred CCCEEEEEECCCcEEEEecCCCcceeeeEe--cCCCCc---EEEEEeCCCC----------------CCCEEEEeccCCE
Confidence 355689999999999999974322111111 012222 3335555440 1599999999999
Q ss_pred EEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCC--CcEEEEEeCCCcEEEEECCCcceeeee
Q 021036 96 VSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNP--QVLLVTGSSDGSVRIWDGYIQELQKSA 173 (318)
Q Consensus 96 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~--~~~l~s~~~d~~v~iwd~~~~~~~~~~ 173 (318)
|++||+.+++ ...+..+..|...|.+++| +++ +.+|++++.|+.|++||++.+......
T Consensus 81 v~iwd~~~~~------------~~~~~~~~~~~~~v~~~~~-------~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~ 141 (379)
T 3jrp_A 81 VLIWKEENGR------------WSQIAVHAVHSASVNSVQW-------APHEYGPLLLVASSDGKVSVVEFKENGTTSPI 141 (379)
T ss_dssp EEEEEEETTE------------EEEEEEECCCSSCEEEEEE-------CCGGGCSEEEEEETTSEEEEEECCTTSCCCEE
T ss_pred EEEEEcCCCc------------eeEeeeecCCCcceEEEEe-------CCCCCCCEEEEecCCCcEEEEecCCCCceeeE
Confidence 9999999864 2356778889999999999 787 899999999999999999877433221
Q ss_pred cccccccccceeeeeecccceeEEEEeeccCCC-------------CceEEEEEeCCCcEEEeeeccCCCeeeEeeeeec
Q 021036 174 EAHCVPFSLLKEVVTVNTVPISVLSLILPVQSP-------------RLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNA 240 (318)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~-------------~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 240 (318)
. ...|...|.+++|+ | ++.+|++++.||.|++||+............+.+
T Consensus 142 ~------------~~~~~~~v~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 204 (379)
T 3jrp_A 142 I------------IDAHAIGVNSASWA-----PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG 204 (379)
T ss_dssp E------------EECCTTCEEEEEEC-----CCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECC
T ss_pred E------------ecCCCCceEEEEEc-----CccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEec
Confidence 1 13455689999999 7 6999999999999999976555444456677889
Q ss_pred ccCceeEEEEcCC---CCEEEEecCCCcEEEEEecCCcee-eeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 241 HDQVVTGLAWAFD---GCCLYSCSQDNFVRSWIFHGNSLS-QVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 241 h~~~v~~~~~~~~---~~~l~s~~~d~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
|...|.+++|+|+ +.+|++++.||.|++||++++... ..... ....|...|.+++|+|++++|+++
T Consensus 205 h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----------~~~~~~~~v~~~~~s~~g~~l~~~ 274 (379)
T 3jrp_A 205 HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLL----------KEEKFPDVLWRASWSLSGNVLALS 274 (379)
T ss_dssp CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEES----------SSSCCSSCEEEEEECSSSCCEEEE
T ss_pred ccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeee----------ccccCCCcEEEEEEcCCCCEEEEe
Confidence 9999999999999 899999999999999999875321 11110 112355689999999999999986
Q ss_pred e
Q 021036 317 Q 317 (318)
Q Consensus 317 ~ 317 (318)
.
T Consensus 275 ~ 275 (379)
T 3jrp_A 275 G 275 (379)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.98 E-value=1.2e-29 Score=214.70 Aligned_cols=255 Identities=15% Similarity=0.165 Sum_probs=171.8
Q ss_pred CcCCCCCccceEEeeCCCceeEeecCCCCCCCceecch-hccccccccceeeeeccccc---------------------
Q 021036 10 NKMKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQ-YASRSAMLHSLAVAWSPVLR--------------------- 67 (318)
Q Consensus 10 ~~~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~w~p~~~--------------------- 67 (318)
.++.+.+...++|||.|++|++||+.+.+......... .+|... +.+++|+|++.
T Consensus 44 v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~---V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~ 120 (340)
T 4aow_A 44 IATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHF---VSDVVISSDGQFALSGSWDGTLRLWDLTTGTT 120 (340)
T ss_dssp EEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSC---EEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred EEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCC---EEEEEECCCCCEEEEEcccccceEEeecccce
Confidence 34555556778999999999999998876543332211 112222 33455555542
Q ss_pred ---CCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCC
Q 021036 68 ---LSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSS 144 (318)
Q Consensus 68 ---~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 144 (318)
...+...+....+++++++|++|+.|+.+++||.... ........+|...|..++| +
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~-------------~~~~~~~~~~~~~v~~~~~-------~ 180 (340)
T 4aow_A 121 TRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGV-------------CKYTVQDESHSEWVSCVRF-------S 180 (340)
T ss_dssp EEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC-------------EEEEECSSSCSSCEEEEEE-------C
T ss_pred eeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCC-------------ceEEEEeccccCcccceEE-------c
Confidence 0012222333344444444555555555555544432 2334456788999999999 4
Q ss_pred CC--CcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEE
Q 021036 145 NP--QVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDL 222 (318)
Q Consensus 145 ~~--~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~v 222 (318)
++ ..++++++.|+.|++||+++++....+..|. .+|++++|+ |++++|++|+.||.|++
T Consensus 181 ~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~--------------~~v~~~~~s-----~~~~~l~s~s~Dg~i~i 241 (340)
T 4aow_A 181 PNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHT--------------GYLNTVTVS-----PDGSLCASGGKDGQAML 241 (340)
T ss_dssp SCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCS--------------SCEEEEEEC-----TTSSEEEEEETTCEEEE
T ss_pred cCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCC--------------CcEEEEEEC-----CCCCEEEEEeCCCeEEE
Confidence 43 4678999999999999999988877765544 489999999 99999999999999999
Q ss_pred eeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeee
Q 021036 223 WKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCL 302 (318)
Q Consensus 223 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 302 (318)
| |.++.+ ++..+. +...|.++.|+|++. +++++.|+.|++||++++.......... ......+|...|+
T Consensus 242 w--d~~~~~--~~~~~~-~~~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~~~~~h~~~v~ 310 (340)
T 4aow_A 242 W--DLNEGK--HLYTLD-GGDIINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEV-----ISTSSKAEPPQCT 310 (340)
T ss_dssp E--ETTTTE--EEEEEE-CSSCEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC------------CCCCCEE
T ss_pred E--EeccCc--eeeeec-CCceEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccc-----eeeeccCCCCCEE
Confidence 9 556665 555565 456899999999876 5566679999999998866543221111 0123446888999
Q ss_pred EEEEcCCCcEEEEEe
Q 021036 303 GMAVSPGNLVVAMVQ 317 (318)
Q Consensus 303 ~v~~sp~~~~l~~~~ 317 (318)
+++|+|||++|++|.
T Consensus 311 ~l~~s~dg~~l~sgs 325 (340)
T 4aow_A 311 SLAWSADGQTLFAGY 325 (340)
T ss_dssp EEEECTTSSEEEEEE
T ss_pred EEEECCCCCEEEEEe
Confidence 999999999999974
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.4e-30 Score=217.94 Aligned_cols=205 Identities=21% Similarity=0.202 Sum_probs=154.4
Q ss_pred CCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeee-cc-ccccEEEEEeeeecCCCCC
Q 021036 68 LSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLF-QA-HNSWITSISLAVLSSDSSN 145 (318)
Q Consensus 68 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~v~~~~~~p~~~~~~~ 145 (318)
+.+|..+|.+++++++ +|++|+.|+.|++|++..+. ......+ .+ |...|++++| ++
T Consensus 10 ~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~------------~~~~~~~~~~~h~~~v~~v~~-------sp 68 (330)
T 2hes_X 10 LKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDD------------FTLIDVLDETAHKKAIRSVAW-------RP 68 (330)
T ss_dssp EECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSC------------CEEEEEECTTCCCSCEEEEEE-------CT
T ss_pred eccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCC------------eEEEEEEecCCccCCEEEEEE-------CC
Confidence 5568888888888876 99999999999999998753 2344444 34 9999999999 89
Q ss_pred CCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeee
Q 021036 146 PQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKC 225 (318)
Q Consensus 146 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~ 225 (318)
++++|++|+.|++|++||+....... ... .......+|...|.+++|+ |++++|++|+.|++|++|++
T Consensus 69 ~~~~las~s~D~~v~iw~~~~~~~~~-~~~------~~~~~~~~h~~~V~~v~~s-----p~g~~las~s~D~~v~iwd~ 136 (330)
T 2hes_X 69 HTSLLAAGSFDSTVSIWAKEESADRT-FEM------DLLAIIEGHENEVKGVAWS-----NDGYYLATCSRDKSVWIWET 136 (330)
T ss_dssp TSSEEEEEETTSCEEEEEC--------CCC------EEEEEEC----CEEEEEEC-----TTSCEEEEEETTSCEEEEEC
T ss_pred CCCEEEEEeCCCcEEEEEcccCcCcc-ccc------eeEEEEcCCCCcEEEEEEC-----CCCCEEEEEeCCCEEEEEec
Confidence 99999999999999999986432100 000 0001224566699999999 99999999999999999965
Q ss_pred ccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEE
Q 021036 226 DISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMA 305 (318)
Q Consensus 226 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 305 (318)
+......+.+..+.+|...|.+++|+|++.+|++++.|++|++||...+....+ ..+.+|...|.+++
T Consensus 137 ~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~------------~~~~~h~~~v~~~~ 204 (330)
T 2hes_X 137 DESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECV------------AVLNGHEGTVWSSD 204 (330)
T ss_dssp CTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEE------------EEECCCSSCEEEEE
T ss_pred cCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEE------------EEccCCCCcEEEEE
Confidence 333333346778889999999999999999999999999999999876532211 12344677999999
Q ss_pred EcCC--CcEEEEEe
Q 021036 306 VSPG--NLVVAMVQ 317 (318)
Q Consensus 306 ~sp~--~~~l~~~~ 317 (318)
|+|+ +.+|++|.
T Consensus 205 ~~~~~~~~~l~s~s 218 (330)
T 2hes_X 205 FDKTEGVFRLCSGS 218 (330)
T ss_dssp ECCSSSSCEEEEEE
T ss_pred ecCCCCeeEEEEEe
Confidence 9998 77888874
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-31 Score=236.77 Aligned_cols=236 Identities=12% Similarity=0.014 Sum_probs=163.5
Q ss_pred ceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEE
Q 021036 19 PTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSL 98 (318)
Q Consensus 19 ~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i 98 (318)
.+++++.|++|+|||+.++++.......-..+.+. +..++|+|.+ ..++++.+||+++.||+|+|
T Consensus 175 ~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~---V~~v~wsp~~------------~~~~~~~~LAs~s~Dgtvrl 239 (524)
T 2j04_B 175 MFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGE---VWDLKWHEGC------------HAPHLVGCLSFVSQEGTINF 239 (524)
T ss_dssp -------CEEEEEEEEETTTCCEEEEEEEEECCCS---EEEEEECSSC------------CCSSSSCEEEEEETTSCEEE
T ss_pred hhccCCCCceEEEEEccCCCCCceEEEEEEecCCc---EEEEEECCCC------------CCCCCCceEEEEecCCeEEE
Confidence 45778899999999998876432111100012233 4458888863 11223579999999999999
Q ss_pred EEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcce-eeeecccc
Q 021036 99 WRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQEL-QKSAEAHC 177 (318)
Q Consensus 99 w~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~-~~~~~~~~ 177 (318)
||+.++...... ......+...+.+|...|++++| +++ ..|++|+.||+|++||++++.. ...+
T Consensus 240 Wd~~~~~~~~~~---~~~~~~p~~~l~~h~~~v~sv~~-------s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~---- 304 (524)
T 2j04_B 240 LEIIDNATDVHV---FKMCEKPSLTLSLADSLITTFDF-------LSP-TTVVCGFKNGFVAEFDLTDPEVPSFYD---- 304 (524)
T ss_dssp EECCCCSSSSSE---EECCCSCSEEECCTTTCEEEEEE-------SSS-SEEEEEETTSEEEEEETTBCSSCSEEE----
T ss_pred EEcCCCcccccc---ceeecCceEEEEcCCCCEEEEEe-------cCC-CeEEEEeCCCEEEEEECCCCCCceEEe----
Confidence 999876421000 00001223467889999999999 554 4899999999999999987632 2223
Q ss_pred cccccceeeeeecccceeEEE--EeeccCCCCc-eEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccC--ceeEEEEcC
Q 021036 178 VPFSLLKEVVTVNTVPISVLS--LILPVQSPRL-MLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQ--VVTGLAWAF 252 (318)
Q Consensus 178 ~~~~~~~~~~~~~~~~v~~l~--~~~~~~~~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~ 252 (318)
..|..+|.+++ ++ +++ .+|++|+.|++|++| |+++.+ .+..+.+|.. .|.+++|+|
T Consensus 305 ----------~~H~~~V~sv~~~~s-----~~g~~~laS~S~D~tvklW--D~~~~~--~~~~~~~~~~~~~v~~v~fsp 365 (524)
T 2j04_B 305 ----------QVHDSYILSVSTAYS-----DFEDTVVSTVAVDGYFYIF--NPKDIA--TTKTTVSRFRGSNLVPVVYCP 365 (524)
T ss_dssp ----------ECSSSCEEEEEEECC-----TTSCCEEEEEETTSEEEEE--CGGGHH--HHCEEEEECSCCSCCCEEEET
T ss_pred ----------ecccccEEEEEEEcC-----CCCCeEEEEeccCCeEEEE--ECCCCC--cccccccccccCcccceEeCC
Confidence 34556899994 55 777 899999999999999 555554 3445556653 588999999
Q ss_pred CCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 253 DGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 253 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
++..+++++.|++|++||++++.... .+.+|.+.|++|+|+|+|++|++|.
T Consensus 366 ~~~~l~s~~~d~tv~lwd~~~~~~~~--------------~l~gH~~~V~sva~Sp~g~~l~Sgs 416 (524)
T 2j04_B 366 QIYSYIYSDGASSLRAVPSRAAFAVH--------------PLVSRETTITAIGVSRLHPMVLAGS 416 (524)
T ss_dssp TTTEEEEECSSSEEEEEETTCTTCCE--------------EEEECSSCEEEEECCSSCCBCEEEE
T ss_pred CcCeEEEeCCCCcEEEEECcccccce--------------eeecCCCceEEEEeCCCCCeEEEEE
Confidence 99999999999999999998765422 1223566999999999999999874
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6.6e-30 Score=216.42 Aligned_cols=263 Identities=13% Similarity=0.075 Sum_probs=184.0
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCc
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGK 95 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~ 95 (318)
+...+++++.|+.|++||+.++.........-..|... +.+++|+|.. ++++|++|+.||.
T Consensus 22 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~----------------d~~~l~s~~~dg~ 82 (351)
T 3f3f_A 22 YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSS---IVAIDWASPE----------------YGRIIASASYDKT 82 (351)
T ss_dssp SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSC---EEEEEECCGG----------------GCSEEEEEETTSC
T ss_pred CCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCc---EEEEEEcCCC----------------CCCEEEEEcCCCe
Confidence 45568999999999999998765332221111112222 3345565530 2599999999999
Q ss_pred EEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCC--CcEEEEEeCCCcEEEEECCCcceeeee
Q 021036 96 VSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNP--QVLLVTGSSDGSVRIWDGYIQELQKSA 173 (318)
Q Consensus 96 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~--~~~l~s~~~d~~v~iwd~~~~~~~~~~ 173 (318)
|++||+++++... .....+.+..+..|...|.+++| +++ +++|++++.|+.|++||+++++....+
T Consensus 83 v~vwd~~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~-------~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 150 (351)
T 3f3f_A 83 VKLWEEDPDQEEC-----SGRRWNKLCTLNDSKGSLYSVKF-------APAHLGLKLACLGNDGILRLYDALEPSDLRSW 150 (351)
T ss_dssp EEEEEECTTSCTT-----SSCSEEEEEEECCCSSCEEEEEE-------CCGGGCSEEEEEETTCEEEEEECSSTTCTTCC
T ss_pred EEEEecCCCcccc-----cccCcceeeeecccCCceeEEEE-------cCCCCCcEEEEecCCCcEEEecCCChHHhccc
Confidence 9999998754210 00012557778899999999999 788 899999999999999999988766544
Q ss_pred cccccccccceeeeeecccceeEEEEeeccCCCC---ceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEE
Q 021036 174 EAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPR---LMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAW 250 (318)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~---~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~ 250 (318)
..... ..........+...+.+++|+ |+ +..+++++.++.+.+| +...++...+..+.+|...|++++|
T Consensus 151 ~~~~~-~~~~~~~~~~~~~~~~~~~~~-----p~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~h~~~i~~~~~ 222 (351)
T 3f3f_A 151 TLTSE-MKVLSIPPANHLQSDFCLSWC-----PSRFSPEKLAVSALEQAIIYQ--RGKDGKLHVAAKLPGHKSLIRSISW 222 (351)
T ss_dssp EEEEE-EESCSCCCSSCSCCCEEEEEC-----CCSSSCCEEEEEETTEEEEEE--ECTTSCEEEEEECCCCCSCEEEEEE
T ss_pred ccccc-ccccccccCCcccceeEEEec-----cCCCCCcEEEEecCCCcEEEE--ccCCCceeeeeecCCCCcceeEEEE
Confidence 32211 111111223466789999999 76 8999999999999777 4555555567788899999999999
Q ss_pred cCCC----CEEEEecCCCcEEEEEecCCceeeeecCCCC-----------CCc---------------------cccccC
Q 021036 251 AFDG----CCLYSCSQDNFVRSWIFHGNSLSQVSIPTNT-----------PGL---------------------QSCTDL 294 (318)
Q Consensus 251 ~~~~----~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~-----------~~~---------------------~~~~~~ 294 (318)
+|++ .+|++++.||.|++||++.+........... ... .....+
T Consensus 223 ~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (351)
T 3f3f_A 223 APSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH 302 (351)
T ss_dssp CCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEE
T ss_pred CCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEE
Confidence 9998 7999999999999999986432211100000 000 011224
Q ss_pred CCcceeeeEEEEcCCCcEEEEEe
Q 021036 295 PDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 295 ~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
.+|...|++++|+|++++|+++.
T Consensus 303 ~~h~~~v~~~~~s~~~~~l~s~~ 325 (351)
T 3f3f_A 303 DDHNGEVWSVSWNLTGTILSSAG 325 (351)
T ss_dssp CTTSSCEEEEEECSSSCCEEEEE
T ss_pred ecccccEEEEEEcCCCCEEEEec
Confidence 47889999999999999999874
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.4e-30 Score=230.77 Aligned_cols=232 Identities=21% Similarity=0.294 Sum_probs=183.1
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccc-----------------------cCCCCc
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVL-----------------------RLSSKK 72 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~-----------------------~~~~~~ 72 (318)
+...+++++.|+.+++||... +.+..+.. |... +.+++|+|++ .+.+|.
T Consensus 273 d~~~l~~~~~d~~i~~w~~~~-~~~~~~~~----h~~~---v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~ 344 (577)
T 2ymu_A 273 DGQTIASASDDKTVKLWNRNG-QLLQTLTG----HSSS---VWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHS 344 (577)
T ss_dssp TSSEEEEEETTSCEEEEETTS-CEEEEECC----CSSC---EEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCS
T ss_pred CCCEEEEEeCCCEEEEEeCCC-cEEEEEec----CCCC---eEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCC
Confidence 445689999999999999753 33222221 2222 1223333332 145678
Q ss_pred ccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEE
Q 021036 73 YPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVT 152 (318)
Q Consensus 73 ~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s 152 (318)
.+|.++++++++++|++|+.||.|++|+.. .+.+..+.+|...|.+++| ++++++|++
T Consensus 345 ~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~---------------~~~~~~~~~~~~~v~~~~~-------s~dg~~l~~ 402 (577)
T 2ymu_A 345 SSVWGVAFSPDGQTIASASDDKTVKLWNRN---------------GQLLQTLTGHSSSVRGVAF-------SPDGQTIAS 402 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETT---------------CCEEEEEECCSSCEEEEEE-------CTTSSCEEE
T ss_pred CCEEEEEECCCCCEEEEEeCCCEEEEEcCC---------------CCEEEEecCCCCCeEEEEE-------CCCCCEEEE
Confidence 889999999999999999999999999964 3456778899999999999 899999999
Q ss_pred EeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCee
Q 021036 153 GSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKF 232 (318)
Q Consensus 153 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~ 232 (318)
++.|+.|++||. +++....+.. |...|.+++|+ |++++|++++.|+.|++|+ ... +
T Consensus 403 ~~~d~~v~~~~~-~~~~~~~~~~--------------~~~~v~~~~~s-----~d~~~l~~~~~d~~v~~w~--~~~-~- 458 (577)
T 2ymu_A 403 ASDDKTVKLWNR-NGQLLQTLTG--------------HSSSVWGVAFS-----PDDQTIASASDDKTVKLWN--RNG-Q- 458 (577)
T ss_dssp EETTSEEEEECT-TCCEEEEEEC--------------CSSCEEEEEEC-----TTSSEEEEEETTSEEEEEE--TTS-C-
T ss_pred EeCCCEEEEEeC-CCCEEEEecC--------------CCCCeEEEEEC-----CCCCEEEEEcCCCEEEEEE--CCC-C-
Confidence 999999999996 4555555443 44589999999 9999999999999999995 333 3
Q ss_pred eEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcE
Q 021036 233 DKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLV 312 (318)
Q Consensus 233 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~ 312 (318)
.+..+.+|...|++++|+|++++|++++.|++|++||........+. +|...|++++|+|||++
T Consensus 459 -~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~---------------~h~~~v~~l~~s~dg~~ 522 (577)
T 2ymu_A 459 -LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT---------------GHSSSVRGVAFSPDGQT 522 (577)
T ss_dssp -EEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEE---------------CCSSCEEEEEECTTSSC
T ss_pred -EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEe---------------CCCCCEEEEEEcCCCCE
Confidence 56678899999999999999999999999999999997554444433 35568999999999999
Q ss_pred EEEEe
Q 021036 313 VAMVQ 317 (318)
Q Consensus 313 l~~~~ 317 (318)
||++.
T Consensus 523 l~s~~ 527 (577)
T 2ymu_A 523 IASAS 527 (577)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99874
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-30 Score=222.50 Aligned_cols=204 Identities=17% Similarity=0.236 Sum_probs=157.9
Q ss_pred CCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCC-CccEEEEecCC
Q 021036 15 SNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSN-WFSILAVGGRS 93 (318)
Q Consensus 15 ~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~-~~~~l~~g~~d 93 (318)
.....+++|+.|+++++||+.+++++..+.... ..+|..+|.++.+++ ++++|++|+.|
T Consensus 168 ~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~--------------------~~~h~~~v~~~~~~~~~~~~l~sgs~D 227 (380)
T 3iz6_a 168 DQETRLITGSGDQTCVLWDVTTGQRISIFGSEF--------------------PSGHTADVLSLSINSLNANMFISGSCD 227 (380)
T ss_dssp SSSSCEEEECTTSCEEEECTTTCCEEEEECCCS--------------------SSSCCSCEEEEEECSSSCCEEEEEETT
T ss_pred CCCCEEEEECCCCcEEEEEcCCCcEEEEeeccc--------------------CCCCccCeEEEEeecCCCCEEEEEECC
Confidence 334568999999999999999987654432110 112333334444333 36899999999
Q ss_pred CcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeee
Q 021036 94 GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSA 173 (318)
Q Consensus 94 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 173 (318)
|.|++||++.. .+.+..+.+|...|++++| +|++++|++|+.|++|++||+++++.+..+
T Consensus 228 ~~v~~wd~~~~-------------~~~~~~~~~h~~~v~~v~~-------~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~ 287 (380)
T 3iz6_a 228 TTVRLWDLRIT-------------SRAVRTYHGHEGDINSVKF-------FPDGQRFGTGSDDGTCRLFDMRTGHQLQVY 287 (380)
T ss_dssp SCEEEEETTTT-------------CCCCEEECCCSSCCCEEEE-------CTTSSEEEEECSSSCEEEEETTTTEEEEEE
T ss_pred CeEEEEECCCC-------------CcceEEECCcCCCeEEEEE-------ecCCCeEEEEcCCCeEEEEECCCCcEEEEe
Confidence 99999999743 2345678899999999999 899999999999999999999999887766
Q ss_pred cccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeee----ecccCceeEEE
Q 021036 174 EAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSY----NAHDQVVTGLA 249 (318)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~----~~h~~~v~~~~ 249 (318)
..+... ...+...|.+++|+ |+|.+|++|+.||.|++|| ...++ .+..+ .+|.+.|++++
T Consensus 288 ~~~~~~-------~~~~~~~v~~~~~s-----~~g~~l~~g~~dg~i~vwd--~~~~~--~~~~~~~~~~~h~~~v~~l~ 351 (380)
T 3iz6_a 288 NREPDR-------NDNELPIVTSVAFS-----ISGRLLFAGYSNGDCYVWD--TLLAE--MVLNLGTLQNSHEGRISCLG 351 (380)
T ss_dssp CCCCSS-------SCCSSCSCSEEEEC-----SSSSEEEEECTTSCEEEEE--TTTCC--EEEEECCSCSSCCCCCCEEE
T ss_pred cccccc-------cccccCceEEEEEC-----CCCCEEEEEECCCCEEEEE--CCCCc--eEEEEecccCCCCCceEEEE
Confidence 543210 01122358899999 9999999999999999994 44544 33333 57999999999
Q ss_pred EcCCCCEEEEecCCCcEEEEEecCC
Q 021036 250 WAFDGCCLYSCSQDNFVRSWIFHGN 274 (318)
Q Consensus 250 ~~~~~~~l~s~~~d~~v~iwd~~~~ 274 (318)
|+|+|.+|++|+.|++|++|++.+.
T Consensus 352 ~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 352 LSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp ECSSSSEEEEECTTSCEEEEECCSS
T ss_pred ECCCCCEEEEeeCCCCEEEEecCCC
Confidence 9999999999999999999998764
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.97 E-value=8.4e-30 Score=218.39 Aligned_cols=226 Identities=12% Similarity=0.068 Sum_probs=175.2
Q ss_pred CccceEEeeCCCceeEeecCCCC--CCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCC
Q 021036 16 NTHPTVAASKSKGNSITKIPSNC--CLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRS 93 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~d 93 (318)
+...+++++.|+.+++||+.+++ .+..+.. |... +.+++|+|++ ++|++++.|
T Consensus 19 ~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~----h~~~---v~~~~~~~~~------------------~~l~~~~~d 73 (372)
T 1k8k_C 19 DRTQIAICPNNHEVHIYEKSGNKWVQVHELKE----HNGQ---VTGVDWAPDS------------------NRIVTCGTD 73 (372)
T ss_dssp TSSEEEEECSSSEEEEEEEETTEEEEEEEEEC----CSSC---EEEEEEETTT------------------TEEEEEETT
T ss_pred CCCEEEEEeCCCEEEEEeCCCCcEEeeeeecC----CCCc---ccEEEEeCCC------------------CEEEEEcCC
Confidence 45568889999999999998875 3222221 3332 3446666655 999999999
Q ss_pred CcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeee
Q 021036 94 GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSA 173 (318)
Q Consensus 94 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 173 (318)
|.|++||+++++. .....+..|...|.+++| ++++++|++++.|+.|++||++.++.....
T Consensus 74 g~i~vwd~~~~~~------------~~~~~~~~~~~~v~~~~~-------~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~ 134 (372)
T 1k8k_C 74 RNAYVWTLKGRTW------------KPTLVILRINRAARCVRW-------APNEKKFAVGSGSRVISICYFEQENDWWVC 134 (372)
T ss_dssp SCEEEEEEETTEE------------EEEEECCCCSSCEEEEEE-------CTTSSEEEEEETTSSEEEEEEETTTTEEEE
T ss_pred CeEEEEECCCCee------------eeeEEeecCCCceeEEEE-------CCCCCEEEEEeCCCEEEEEEecCCCcceee
Confidence 9999999987642 233445678999999999 899999999999999999999877632211
Q ss_pred cccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeec----------------cCCCeeeEeee
Q 021036 174 EAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCD----------------ISCNKFDKVGS 237 (318)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~----------------~~~~~~~~~~~ 237 (318)
. .....|...|.+++|+ |++.+|++++.||.|++||+. ...++ .+..
T Consensus 135 ~----------~~~~~~~~~i~~~~~~-----~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 197 (372)
T 1k8k_C 135 K----------HIKKPIRSTVLSLDWH-----PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGE--LMFE 197 (372)
T ss_dssp E----------EECTTCCSCEEEEEEC-----TTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTC--EEEE
T ss_pred e----------eeecccCCCeeEEEEc-----CCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhh--heEe
Confidence 1 1112345689999999 999999999999999999643 22333 6677
Q ss_pred eecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 238 YNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 238 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
+.+|...|.+++|+|++.+|++++.|+.|++||++++...... ..|...|.+++|+|++++|++|
T Consensus 198 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--------------~~~~~~v~~~~~~~~~~~l~~~ 262 (372)
T 1k8k_C 198 SSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL--------------ASETLPLLAVTFITESSLVAAG 262 (372)
T ss_dssp CCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE--------------ECSSCCEEEEEEEETTEEEEEE
T ss_pred cCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEE--------------ccCCCCeEEEEEecCCCEEEEE
Confidence 7889999999999999999999999999999999876654322 1244589999999999999987
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-30 Score=226.12 Aligned_cols=264 Identities=17% Similarity=0.198 Sum_probs=193.6
Q ss_pred eccCcCCCCCccceEEe----------eCCCceeEeecCCCCCCCceecchhccccccccceeeeeccccc---------
Q 021036 7 FTSNKMKDSNTHPTVAA----------SKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLR--------- 67 (318)
Q Consensus 7 ~~~~~~~~~~~~~~~t~----------s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~--------- 67 (318)
..+..+.+.+...++++ +.|+.+++||+.+++..+.+.. +.+... +.+++|+|++.
T Consensus 15 v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~--~~~~~~---v~~~~~s~~~~~l~~~~~dg 89 (416)
T 2pm9_A 15 TATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS--LQVDSK---FNDLDWSHNNKIIAGALDNG 89 (416)
T ss_dssp SCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC--CCCSSC---EEEEEECSSSSCEEEEESSS
T ss_pred cceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE--EecCCc---eEEEEECCCCCeEEEEccCC
Confidence 34455666556678888 8999999999988653222111 112222 22344444332
Q ss_pred -------------------CCCCcccccccCCCCC-ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccc
Q 021036 68 -------------------LSSKKYPVPQNGSSNW-FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAH 127 (318)
Q Consensus 68 -------------------~~~~~~~v~~~~~s~~-~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h 127 (318)
+..|..+|.+++++++ +++|++++.||.|++||+.+++..... ........+..|
T Consensus 90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-----~~~~~~~~~~~~ 164 (416)
T 2pm9_A 90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSN-----YTPLTPGQSMSS 164 (416)
T ss_dssp CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTT-----CCCBCCCCSCCS
T ss_pred eEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccc-----ccccccccccCC
Confidence 4468889999999998 899999999999999999876410000 001122335678
Q ss_pred cccEEEEEeeeecCCCCCC-CcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCC
Q 021036 128 NSWITSISLAVLSSDSSNP-QVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSP 206 (318)
Q Consensus 128 ~~~v~~~~~~p~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~ 206 (318)
...|.+++| +++ +.+|++++.|+.|++||+++++....+..+... ..|...+.+++|+ |
T Consensus 165 ~~~v~~~~~-------~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~--------~~~~~~v~~~~~~-----~ 224 (416)
T 2pm9_A 165 VDEVISLAW-------NQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPN--------SGIKQQLSVVEWH-----P 224 (416)
T ss_dssp SCCCCEEEE-------CSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCS--------SCCCCCEEEEEEC-----S
T ss_pred CCCeeEEEe-------CCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccc--------cccCCceEEEEEC-----C
Confidence 999999999 777 789999999999999999998877776544210 1224589999999 8
Q ss_pred Cc-eEEEEEeCCC---cEEEeeeccCCCeeeEeeeee-cccCceeEEEEcC-CCCEEEEecCCCcEEEEEecCCceeeee
Q 021036 207 RL-MLLAVGKGSG---SFDLWKCDISCNKFDKVGSYN-AHDQVVTGLAWAF-DGCCLYSCSQDNFVRSWIFHGNSLSQVS 280 (318)
Q Consensus 207 ~~-~~l~~~~~dg---~i~vw~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 280 (318)
++ .++++++.|+ .|++|| .++.. .++..+. +|...|.+++|+| ++.+|++++.|+.|++||+++++....
T Consensus 225 ~~~~~l~~~~~d~~~~~i~~~d--~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~- 300 (416)
T 2pm9_A 225 KNSTRVATATGSDNDPSILIWD--LRNAN-TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQ- 300 (416)
T ss_dssp SCTTEEEEEECCSSSCCCCEEE--TTSTT-SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEE-
T ss_pred CCCCEEEEEECCCCCceEEEEe--CCCCC-CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCcccee-
Confidence 86 6999999998 999995 44432 1556677 8999999999999 899999999999999999988655432
Q ss_pred cCCCCCCccccccCCCcceeeeEEEEcCCC-cEEEEEe
Q 021036 281 IPTNTPGLQSCTDLPDAFVSCLGMAVSPGN-LVVAMVQ 317 (318)
Q Consensus 281 ~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~-~~l~~~~ 317 (318)
+.+|...|.+++|+|++ .+|+++.
T Consensus 301 -------------~~~~~~~v~~~~~s~~~~~~l~s~~ 325 (416)
T 2pm9_A 301 -------------FPARGNWCFKTKFAPEAPDLFACAS 325 (416)
T ss_dssp -------------EECSSSCCCCEEECTTCTTEEEECC
T ss_pred -------------ecCCCCceEEEEECCCCCCEEEEEe
Confidence 12345689999999998 7888863
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-30 Score=220.74 Aligned_cols=190 Identities=10% Similarity=-0.020 Sum_probs=144.3
Q ss_pred ccccCCCCCccEEE--EecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEE
Q 021036 75 VPQNGSSNWFSILA--VGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVT 152 (318)
Q Consensus 75 v~~~~~s~~~~~l~--~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s 152 (318)
+.+++|||+|++++ +++.|++|+|||+++++ .+..+ .|...|.+++| +|+|++|++
T Consensus 136 ~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~--------------~~~~~-~~~~~V~~v~f-------spdg~~l~s 193 (365)
T 4h5i_A 136 TKLVYISREGTVAAIASSKVPAIMRIIDPSDLT--------------EKFEI-ETRGEVKDLHF-------STDGKVVAY 193 (365)
T ss_dssp EEEEEECTTSSCEEEEESCSSCEEEEEETTTTE--------------EEEEE-ECSSCCCEEEE-------CTTSSEEEE
T ss_pred EEEEEEcCCCCEEEEEECCCCCEEEEeECCCCc--------------EEEEe-CCCCceEEEEE-------ccCCceEEe
Confidence 44555556668875 45579999999999854 44445 37788999999 999999999
Q ss_pred EeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCC----cEEEeeeccC
Q 021036 153 GSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSG----SFDLWKCDIS 228 (318)
Q Consensus 153 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg----~i~vw~~~~~ 228 (318)
++.| .+++|+..+++....... ..|...|.+++|+ |++..+++++.|+ .+++|+....
T Consensus 194 ~s~~-~~~~~~~~~~~~~~~~~~------------~~~~~~v~~v~fs-----pdg~~l~~~s~d~~~~~~i~~~~~~~~ 255 (365)
T 4h5i_A 194 ITGS-SLEVISTVTGSCIARKTD------------FDKNWSLSKINFI-----ADDTVLIAASLKKGKGIVLTKISIKSG 255 (365)
T ss_dssp ECSS-CEEEEETTTCCEEEEECC------------CCTTEEEEEEEEE-----ETTEEEEEEEESSSCCEEEEEEEEETT
T ss_pred ccce-eEEEEEeccCcceeeeec------------CCCCCCEEEEEEc-----CCCCEEEEEecCCcceeEEeecccccc
Confidence 9855 566777666655432211 2345589999999 9999999999777 4666644333
Q ss_pred CCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcC
Q 021036 229 CNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSP 308 (318)
Q Consensus 229 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp 308 (318)
.........+.+|...|++++|+|+|++||+|+.|++|+|||+++++..... +.+|...|++|+|+|
T Consensus 256 ~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~-------------~~gH~~~V~~v~fSp 322 (365)
T 4h5i_A 256 NTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIF-------------KQAHSFAITEVTISP 322 (365)
T ss_dssp EEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEE-------------TTSSSSCEEEEEECT
T ss_pred eecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEe-------------cCcccCCEEEEEECC
Confidence 2233345567789999999999999999999999999999999987765421 234777999999999
Q ss_pred CCcEEEEEe
Q 021036 309 GNLVVAMVQ 317 (318)
Q Consensus 309 ~~~~l~~~~ 317 (318)
||++||+|.
T Consensus 323 dg~~laS~S 331 (365)
T 4h5i_A 323 DSTYVASVS 331 (365)
T ss_dssp TSCEEEEEE
T ss_pred CCCEEEEEe
Confidence 999999984
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.4e-30 Score=222.25 Aligned_cols=273 Identities=14% Similarity=0.107 Sum_probs=194.2
Q ss_pred cCCCCCccceEEeeCCCceeEeec----CCCCC------CCceecchhc------cccccccceeeeeccccc-------
Q 021036 11 KMKDSNTHPTVAASKSKGNSITKI----PSNCC------LPLITADQYA------SRSAMLHSLAVAWSPVLR------- 67 (318)
Q Consensus 11 ~~~~~~~~~~~t~s~d~~i~iwd~----~~~~~------~~~~~~~~~~------~~~~~~~~~~~~w~p~~~------- 67 (318)
.+.+.....+++++.|+.+++||+ .+++. ...+...... |.. .+.+++|+|++.
T Consensus 52 ~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~ 128 (425)
T 1r5m_A 52 TWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTN---QVTCLAWSHDGNSIVTGVE 128 (425)
T ss_dssp EECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CB---CEEEEEECTTSSEEEEEET
T ss_pred EECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCC---ceEEEEEcCCCCEEEEEeC
Confidence 344433347899999999999999 77763 2222110000 122 244577776643
Q ss_pred ----------------CCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCcccccccccc-----------------
Q 021036 68 ----------------LSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKV----------------- 114 (318)
Q Consensus 68 ----------------~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~----------------- 114 (318)
+..|..+|.++++++++++|++++.||.|++||+.+++.........
T Consensus 129 dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (425)
T 1r5m_A 129 NGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSL 208 (425)
T ss_dssp TSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCC
T ss_pred CCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcce
Confidence 44688899999999999999999999999999998776433211000
Q ss_pred -------------------------CCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcce
Q 021036 115 -------------------------PTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQEL 169 (318)
Q Consensus 115 -------------------------~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 169 (318)
....+.+..+..|...|.+++| ++++++|++++.|+.|++||+++++.
T Consensus 209 ~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~-------~~~~~~l~~~~~d~~i~i~d~~~~~~ 281 (425)
T 1r5m_A 209 GVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEF-------NDTNKLLLSASDDGTLRIWHGGNGNS 281 (425)
T ss_dssp BSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEE-------ETTTTEEEEEETTSCEEEECSSSBSC
T ss_pred eeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEE-------CCCCCEEEEEcCCCEEEEEECCCCcc
Confidence 0112334456688999999999 88999999999999999999998877
Q ss_pred eeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEE
Q 021036 170 QKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLA 249 (318)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~ 249 (318)
...+..+ ...|.+++|+ |++ .+++++.|+.|++| +.++.+ .+..+..|...|.+++
T Consensus 282 ~~~~~~~--------------~~~i~~~~~~-----~~~-~l~~~~~d~~i~i~--d~~~~~--~~~~~~~~~~~i~~~~ 337 (425)
T 1r5m_A 282 QNCFYGH--------------SQSIVSASWV-----GDD-KVISCSMDGSVRLW--SLKQNT--LLALSIVDGVPIFAGR 337 (425)
T ss_dssp SEEECCC--------------SSCEEEEEEE-----TTT-EEEEEETTSEEEEE--ETTTTE--EEEEEECTTCCEEEEE
T ss_pred ceEecCC--------------CccEEEEEEC-----CCC-EEEEEeCCCcEEEE--ECCCCc--EeEecccCCccEEEEE
Confidence 7666544 3489999999 888 99999999999999 556665 6677888999999999
Q ss_pred EcCCCCEEEEecCCCcEEEEEecCCceeeeec--CCCCCC----ccccccCCCcce--eeeEEEEcCCCcEEEEEe
Q 021036 250 WAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSI--PTNTPG----LQSCTDLPDAFV--SCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 250 ~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~--~~~~~~----~~~~~~~~~h~~--~v~~v~~sp~~~~l~~~~ 317 (318)
|+|++++|++++.||.|++||+.++....... ...... ......+.+|.. .|.+++|+|++++|+++.
T Consensus 338 ~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 413 (425)
T 1r5m_A 338 ISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAY 413 (425)
T ss_dssp ECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEE
T ss_pred EcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEe
Confidence 99999999999999999999998755110000 000000 001123445655 899999999999998874
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=226.20 Aligned_cols=245 Identities=10% Similarity=0.030 Sum_probs=155.0
Q ss_pred ccceEEeeCCCceeEeecCCCCCCCceecc-hhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCc
Q 021036 17 THPTVAASKSKGNSITKIPSNCCLPLITAD-QYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGK 95 (318)
Q Consensus 17 ~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~ 95 (318)
...+++++.|+++++||+.++++....... ..+|.+. +..++|+|.. ......++++||+|+.|++
T Consensus 101 ~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~---v~~v~~~p~~----------~~~~~~d~~~las~s~D~t 167 (393)
T 4gq1_A 101 SLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNF---VNDIDIADVY----------SADNRLAEQVIASVGDDCT 167 (393)
T ss_dssp EEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSC---EEEEEEEEEE----------CTTCSEEEEEEEEEETTSE
T ss_pred CCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCc---eEEEEEcccc----------ccccCCCCCEEEEEECCCe
Confidence 345899999999999999887553221111 1124443 2335555521 0000115699999999999
Q ss_pred EEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCC-cEEEEEeCCCcEEEEECCCcceeeeec
Q 021036 96 VSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQ-VLLVTGSSDGSVRIWDGYIQELQKSAE 174 (318)
Q Consensus 96 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~ 174 (318)
|+|||+.++ ..+..+..|..+|.+++| +|++ .+|++++.|++|++||+++++......
T Consensus 168 v~~Wd~~~~--------------~~~~~~~~~~~~v~~v~~-------~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~ 226 (393)
T 4gq1_A 168 LIIWRLTDE--------------GPILAGYPLSSPGISVQF-------RPSNPNQLIVGERNGNIRIFDWTLNLSAEENS 226 (393)
T ss_dssp EEEEEEETT--------------EEEEEEEECSSCEEEEEE-------ETTEEEEEEEEETTSEEEEEETTCCC------
T ss_pred EEEEECCCC--------------ceeeeecCCCCCcEEEEE-------CCCCCceEEecCCCCEEEEEECCCCccccccc
Confidence 999999874 345566788999999999 6666 589999999999999999876654432
Q ss_pred ccccccc-----------cceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccC
Q 021036 175 AHCVPFS-----------LLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQ 243 (318)
Q Consensus 175 ~~~~~~~-----------~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~ 243 (318)
.+..... ........|...+.++.|. ++++..+++++.|+.+++||+ ..++ ....+..|..
T Consensus 227 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~----~~dg~~l~s~s~d~~i~vwd~--~~~~--~~~~l~~~~~ 298 (393)
T 4gq1_A 227 QTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWI----GSDGSGILAMCKSGAWLRWNL--FANN--DYNEISDSTM 298 (393)
T ss_dssp ----CSCCCSEEEESGGGC------CCSSSCSEEEEE----TTTTCEEEEECTTSEEEEEEC------------------
T ss_pred ccCCcccceEEecccccceeeeecccccccceeeeee----cCCCCEEEEEeCCCCEEEEEC--ccCC--CCceEeeecC
Confidence 2211000 0001224567788899987 489999999999999999954 3332 2222322322
Q ss_pred cee------------------EEEEcC--CCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeE
Q 021036 244 VVT------------------GLAWAF--DGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLG 303 (318)
Q Consensus 244 ~v~------------------~~~~~~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 303 (318)
.+. ...|+| ++.++++|+.||+|++||+.++....... +|..+|++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~--------------~~~~~V~s 364 (393)
T 4gq1_A 299 KLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPI--------------QLGMPIVD 364 (393)
T ss_dssp -----CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEE--------------ECSSCEEE
T ss_pred ccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEec--------------CCCCcEEE
Confidence 222 233444 34467888999999999998866543221 13458999
Q ss_pred EEEcCCCcEEEEEe
Q 021036 304 MAVSPGNLVVAMVQ 317 (318)
Q Consensus 304 v~~sp~~~~l~~~~ 317 (318)
|+|+|||++||++.
T Consensus 365 vafspdG~~LA~as 378 (393)
T 4gq1_A 365 FCWHQDGSHLAIAT 378 (393)
T ss_dssp EEECTTSSEEEEEE
T ss_pred EEEcCCCCEEEEEe
Confidence 99999999999874
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.97 E-value=8.4e-30 Score=216.63 Aligned_cols=201 Identities=15% Similarity=0.159 Sum_probs=160.7
Q ss_pred cCCCCcccccccCC-----CC-CccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeec
Q 021036 67 RLSSKKYPVPQNGS-----SN-WFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLS 140 (318)
Q Consensus 67 ~~~~~~~~v~~~~~-----s~-~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~ 140 (318)
.+.+|..+|+++++ ++ ++++|++|+.|++|++||+.+++.. .........+.+|...|.+++|
T Consensus 16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~-------~~~~~~~~~l~~h~~~V~~~~~---- 84 (343)
T 2xzm_R 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQN-------GYFGIPHKALTGHNHFVSDLAL---- 84 (343)
T ss_dssp EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCS-------SBSEEEEEEECCCSSCEEEEEE----
T ss_pred eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcc-------cccccccchhccCCCceEEEEE----
Confidence 46678888888877 55 7899999999999999999764311 0013456778999999999999
Q ss_pred CCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcE
Q 021036 141 SDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSF 220 (318)
Q Consensus 141 ~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i 220 (318)
++++.+|++|+.|++|++||+++++....+..|. ..|.+++|+ |++++|++++.|+.|
T Consensus 85 ---~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~--------------~~v~~v~~s-----p~~~~l~s~~~d~~i 142 (343)
T 2xzm_R 85 ---SQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQ--------------SEVYSVAFS-----PDNRQILSAGAEREI 142 (343)
T ss_dssp ---CSSTTEEEEEETTSEEEEEETTSSCEEEEEECCC--------------SCEEEEEEC-----SSTTEEEEEETTSCE
T ss_pred ---CCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCC--------------CcEEEEEEC-----CCCCEEEEEcCCCEE
Confidence 8999999999999999999999998777665544 489999999 999999999999999
Q ss_pred EEeeeccCCCeeeEeeeeecccCceeEEEEcCCC----------CEEEEecCCCcEEEEEecCCceeeeecCCCCCCccc
Q 021036 221 DLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDG----------CCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQS 290 (318)
Q Consensus 221 ~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----------~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~ 290 (318)
++||+ ............+|...|.+++|+|++ .+|++++.|+.|++||........+
T Consensus 143 ~~wd~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~----------- 209 (343)
T 2xzm_R 143 KLWNI--LGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTF----------- 209 (343)
T ss_dssp EEEES--SSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEE-----------
T ss_pred EEEec--cCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEE-----------
Confidence 99954 333211222233788999999999986 7899999999999999543333222
Q ss_pred cccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 291 CTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 291 ~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
.+|...|.+++|+|+|++|++|.
T Consensus 210 ----~~h~~~v~~~~~s~~g~~l~sgs 232 (343)
T 2xzm_R 210 ----KAHESNVNHLSISPNGKYIATGG 232 (343)
T ss_dssp ----ECCSSCEEEEEECTTSSEEEEEE
T ss_pred ----cCccccceEEEECCCCCEEEEEc
Confidence 23556899999999999999985
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.4e-30 Score=223.56 Aligned_cols=216 Identities=16% Similarity=0.188 Sum_probs=160.7
Q ss_pred CCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEe-------eeccccccEEEEEeeeecC
Q 021036 69 SSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIG-------LFQAHNSWITSISLAVLSS 141 (318)
Q Consensus 69 ~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~-------~~~~h~~~v~~~~~~p~~~ 141 (318)
.+|..+|.++++++++++|++| .||.|++||++++. +.+. .+.+|...|++++|
T Consensus 174 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~-------------~~~~~~~~~~~~~~~~~~~v~~~~~----- 234 (447)
T 3dw8_B 174 NAHTYHINSISINSDYETYLSA-DDLRINLWHLEITD-------------RSFNIVDIKPANMEELTEVITAAEF----- 234 (447)
T ss_dssp SCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEE-------------EEEEEEECCCSSGGGCCCCEEEEEE-----
T ss_pred cCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCC-------------ceeeeeecccccccccCcceEEEEE-----
Confidence 4688899999999999999999 79999999998422 2222 36689999999999
Q ss_pred CCCCCC-cEEEEEeCCCcEEEEECCCcce----eeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeC
Q 021036 142 DSSNPQ-VLLVTGSSDGSVRIWDGYIQEL----QKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKG 216 (318)
Q Consensus 142 ~~~~~~-~~l~s~~~d~~v~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~ 216 (318)
++++ ++|++|+.||.|++||+++++. ...+..+..+. .......|...|.+++|+ |++.+|++++.
T Consensus 235 --~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~s-----~~g~~l~~~~~ 305 (447)
T 3dw8_B 235 --HPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPS--NRSFFSEIISSISDVKFS-----HSGRYMMTRDY 305 (447)
T ss_dssp --CSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-------CCHHHHHTTCEEEEEEC-----TTSSEEEEEES
T ss_pred --CCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCcc--ccccccccCceEEEEEEC-----CCCCEEEEeeC
Confidence 8887 9999999999999999998875 45555443210 001112234589999999 99999999998
Q ss_pred CCcEEEeeeccCC-CeeeEeeeeecccCc---------------eeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeee
Q 021036 217 SGSFDLWKCDISC-NKFDKVGSYNAHDQV---------------VTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVS 280 (318)
Q Consensus 217 dg~i~vw~~~~~~-~~~~~~~~~~~h~~~---------------v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 280 (318)
+.|++|| .+. ++ ++..+.+|... +..++|+|++++|++++.||.|++||+.++....+.
T Consensus 306 -~~v~iwd--~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~ 380 (447)
T 3dw8_B 306 -LSVKVWD--LNMENR--PVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLE 380 (447)
T ss_dssp -SEEEEEE--TTCCSS--CSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEE
T ss_pred -CeEEEEe--CCCCcc--ccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeee
Confidence 9999995 443 33 56677777542 234899999999999999999999999988776554
Q ss_pred cCCCCCCc---------c-c--------cccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 281 IPTNTPGL---------Q-S--------CTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 281 ~~~~~~~~---------~-~--------~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
.+...... . + ......+...|..++|+|++.+||++.
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~ 435 (447)
T 3dw8_B 381 ASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVAT 435 (447)
T ss_dssp CCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEEC
T ss_pred ecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEe
Confidence 43221100 0 0 001124567899999999999999874
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7.5e-30 Score=222.48 Aligned_cols=218 Identities=12% Similarity=0.116 Sum_probs=174.0
Q ss_pred ccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcE
Q 021036 17 THPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKV 96 (318)
Q Consensus 17 ~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i 96 (318)
...+++++.|+.+++||+.+++....+... .. .....|+|++ ++|++|+.||.|
T Consensus 68 g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-----~~---~~~~~~~~~~------------------~~l~~~~~dg~i 121 (420)
T 3vl1_A 68 GSHLYKARLDGHDFLFNTIIRDGSKMLKRA-----DY---TAVDTAKLQM------------------RRFILGTTEGDI 121 (420)
T ss_dssp ETTEEEEEETTEEEEEECCSEETTTTSCSC-----CE---EEEEEECSSS------------------CEEEEEETTSCE
T ss_pred CCeEEEEEcCCcEEEEEecccceeeEEecC-----Cc---eEEEEEecCC------------------CEEEEEECCCCE
Confidence 345799999999999999887765554421 11 2234677777 999999999999
Q ss_pred EEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeeccc
Q 021036 97 SLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAH 176 (318)
Q Consensus 97 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 176 (318)
++||+.++ +....+.+|...|++++| ++++++|++++.|+.|++||+++++....+..|
T Consensus 122 ~iwd~~~~--------------~~~~~~~~h~~~v~~~~~-------~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h 180 (420)
T 3vl1_A 122 KVLDSNFN--------------LQREIDQAHVSEITKLKF-------FPSGEALISSSQDMQLKIWSVKDGSNPRTLIGH 180 (420)
T ss_dssp EEECTTSC--------------EEEEETTSSSSCEEEEEE-------CTTSSEEEEEETTSEEEEEETTTCCCCEEEECC
T ss_pred EEEeCCCc--------------ceeeecccccCccEEEEE-------CCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCC
Confidence 99999874 455677899999999999 899999999999999999999988877666544
Q ss_pred ccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeec---c------------
Q 021036 177 CVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNA---H------------ 241 (318)
Q Consensus 177 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~---h------------ 241 (318)
...|.+++|+ |++.+|++++.||.|++| |.++++ .+..+.. |
T Consensus 181 --------------~~~v~~~~~~-----~~~~~l~s~~~d~~v~iw--d~~~~~--~~~~~~~~~~~~~~v~~~~~~~~ 237 (420)
T 3vl1_A 181 --------------RATVTDIAII-----DRGRNVLSASLDGTIRLW--ECGTGT--TIHTFNRKENPHDGVNSIALFVG 237 (420)
T ss_dssp --------------SSCEEEEEEE-----TTTTEEEEEETTSCEEEE--ETTTTE--EEEEECBTTBTTCCEEEEEEEEC
T ss_pred --------------CCcEEEEEEc-----CCCCEEEEEcCCCcEEEe--ECCCCc--eeEEeecCCCCCCCccEEEEecC
Confidence 4589999999 999999999999999999 555665 4455543 2
Q ss_pred ---------cCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCc-
Q 021036 242 ---------DQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNL- 311 (318)
Q Consensus 242 ---------~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~- 311 (318)
...+.+++|+|++++|++++.||.|++||++++........ .|...|.+++|+|+++
T Consensus 238 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~ 304 (420)
T 3vl1_A 238 TDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPS-------------KFTCSCNSLTVDGNNAN 304 (420)
T ss_dssp CCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECC-------------TTSSCEEEEEECSSCTT
T ss_pred CcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEccc-------------ccCCCceeEEEeCCCCC
Confidence 34555666789999999999999999999988665433221 2556899999999998
Q ss_pred EEEEEe
Q 021036 312 VVAMVQ 317 (318)
Q Consensus 312 ~l~~~~ 317 (318)
+|++|.
T Consensus 305 ~l~~g~ 310 (420)
T 3vl1_A 305 YIYAGY 310 (420)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 888874
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-29 Score=216.30 Aligned_cols=203 Identities=15% Similarity=0.157 Sum_probs=155.2
Q ss_pred cCCCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEe
Q 021036 11 KMKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVG 90 (318)
Q Consensus 11 ~~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g 90 (318)
.+.+.+...+++|+.|+.|++||+.+++....+.. ..|... +.+++|+|.. +++|+++
T Consensus 80 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~h~~~---v~~~~~~~~~-----------------~~~l~s~ 137 (383)
T 3ei3_B 80 EWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQG--MGPGDA---ITGMKFNQFN-----------------TNQLFVS 137 (383)
T ss_dssp EECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECC--CSTTCB---EEEEEEETTE-----------------EEEEEEE
T ss_pred EECCCCCCEEEEEcCCCeEEEEeCCCcccceeeec--CCcCCc---eeEEEeCCCC-----------------CCEEEEE
Confidence 34444446899999999999999998776544432 124443 4457777732 4899999
Q ss_pred cCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCccee
Q 021036 91 GRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQ 170 (318)
Q Consensus 91 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 170 (318)
+.||.|++||+.+.. .........|...|.+++| ++++++|++++.|+.|++||++ ++..
T Consensus 138 ~~d~~i~iwd~~~~~------------~~~~~~~~~~~~~v~~~~~-------~~~~~~l~~~~~d~~i~i~d~~-~~~~ 197 (383)
T 3ei3_B 138 SIRGATTLRDFSGSV------------IQVFAKTDSWDYWYCCVDV-------SVSRQMLATGDSTGRLLLLGLD-GHEI 197 (383)
T ss_dssp ETTTEEEEEETTSCE------------EEEEECCCCSSCCEEEEEE-------ETTTTEEEEEETTSEEEEEETT-SCEE
T ss_pred eCCCEEEEEECCCCc------------eEEEeccCCCCCCeEEEEE-------CCCCCEEEEECCCCCEEEEECC-CCEE
Confidence 999999999998632 2223333445688999999 8899999999999999999994 5555
Q ss_pred eeecccccccccceeeeeecccceeEEEEeeccCCCCce-EEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEE
Q 021036 171 KSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLM-LLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLA 249 (318)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~ 249 (318)
..+.. |...|.+++|+ |++. +|++++.|+.|++||+.........+..+ +|...|.+++
T Consensus 198 ~~~~~--------------h~~~v~~~~~~-----~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~ 257 (383)
T 3ei3_B 198 FKEKL--------------HKAKVTHAEFN-----PRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAY 257 (383)
T ss_dssp EEEEC--------------SSSCEEEEEEC-----SSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEE
T ss_pred EEecc--------------CCCcEEEEEEC-----CCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEE
Confidence 55543 44589999999 8888 99999999999999654322111244444 6999999999
Q ss_pred EcC-CCCEEEEecCCCcEEEEEecCCc
Q 021036 250 WAF-DGCCLYSCSQDNFVRSWIFHGNS 275 (318)
Q Consensus 250 ~~~-~~~~l~s~~~d~~v~iwd~~~~~ 275 (318)
|+| ++.+|++++.|+.|++||++++.
T Consensus 258 ~s~~~~~~l~~~~~d~~i~iwd~~~~~ 284 (383)
T 3ei3_B 258 FNPTDSTKLLTTDQRNEIRVYSSYDWS 284 (383)
T ss_dssp ECTTTSCEEEEEESSSEEEEEETTBTT
T ss_pred EcCCCCCEEEEEcCCCcEEEEECCCCc
Confidence 999 99999999999999999998644
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-29 Score=216.99 Aligned_cols=189 Identities=19% Similarity=0.243 Sum_probs=155.3
Q ss_pred ccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcE
Q 021036 17 THPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKV 96 (318)
Q Consensus 17 ~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i 96 (318)
...+++++.|+++++||+++++.+..+.. |... +.++.|+|.. ++++|++|+.||.|
T Consensus 166 ~~~l~t~s~D~~v~lwd~~~~~~~~~~~~----h~~~---v~~~~~~~~~----------------~g~~l~sgs~Dg~v 222 (354)
T 2pbi_B 166 DMQILTASGDGTCALWDVESGQLLQSFHG----HGAD---VLCLDLAPSE----------------TGNTFVSGGCDKKA 222 (354)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEEEEEC----CSSC---EEEEEECCCS----------------SCCEEEEEETTSCE
T ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEEcC----CCCC---eEEEEEEeCC----------------CCCEEEEEeCCCeE
Confidence 44689999999999999999876555432 3322 3345555532 24899999999999
Q ss_pred EEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeeccc
Q 021036 97 SLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAH 176 (318)
Q Consensus 97 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 176 (318)
++||+++++ .+..+.+|...|++++| +|++.+|++|+.|++|++||++.++....+..+
T Consensus 223 ~~wd~~~~~--------------~~~~~~~h~~~v~~v~~-------~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~ 281 (354)
T 2pbi_B 223 MVWDMRSGQ--------------CVQAFETHESDVNSVRY-------YPSGDAFASGSDDATCRLYDLRADREVAIYSKE 281 (354)
T ss_dssp EEEETTTCC--------------EEEEECCCSSCEEEEEE-------CTTSSEEEEEETTSCEEEEETTTTEEEEEECCT
T ss_pred EEEECCCCc--------------EEEEecCCCCCeEEEEE-------eCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCC
Confidence 999999854 56778899999999999 899999999999999999999987665544322
Q ss_pred ccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCE
Q 021036 177 CVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCC 256 (318)
Q Consensus 177 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 256 (318)
. +...+.+++|+ |++.+|++|+.|+.|++| |..+++ .+..+.+|...|++++|+|+|++
T Consensus 282 ~------------~~~~~~~~~~s-----~~g~~l~~g~~d~~i~vw--d~~~~~--~~~~l~~h~~~v~~l~~spdg~~ 340 (354)
T 2pbi_B 282 S------------IIFGASSVDFS-----LSGRLLFAGYNDYTINVW--DVLKGS--RVSILFGHENRVSTLRVSPDGTA 340 (354)
T ss_dssp T------------CCSCEEEEEEC-----TTSSEEEEEETTSCEEEE--ETTTCS--EEEEECCCSSCEEEEEECTTSSC
T ss_pred C------------cccceeEEEEe-----CCCCEEEEEECCCcEEEE--ECCCCc--eEEEEECCCCcEEEEEECCCCCE
Confidence 2 12367899999 999999999999999999 555555 56778899999999999999999
Q ss_pred EEEecCCCcEEEEE
Q 021036 257 LYSCSQDNFVRSWI 270 (318)
Q Consensus 257 l~s~~~d~~v~iwd 270 (318)
|++|+.|++|++|+
T Consensus 341 l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 341 FCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEEETTSEEEEEC
T ss_pred EEEEcCCCCEEecC
Confidence 99999999999995
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-30 Score=218.03 Aligned_cols=198 Identities=16% Similarity=0.182 Sum_probs=153.4
Q ss_pred CCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCC--C
Q 021036 69 SSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSN--P 146 (318)
Q Consensus 69 ~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~--~ 146 (318)
.+|..+|.+++|++++++|++|+.|++|+|||+.+++ ...+..+.+|.+.|++++| ++ +
T Consensus 10 ~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~------------~~~~~~l~gH~~~V~~v~~-------~~~~~ 70 (316)
T 3bg1_A 10 TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGG------------QILIADLRGHEGPVWQVAW-------AHPMY 70 (316)
T ss_dssp ----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTE------------EEEEEEEECCSSCEEEEEE-------CCGGG
T ss_pred ccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCC------------cEEEEEEcCCCccEEEEEe-------CCCCC
Confidence 4577777777777777999999999999999998754 2356778999999999999 54 4
Q ss_pred CcEEEEEeCCCcEEEEECCCcc--eeeeecccccccccceeeeeecccceeEEEEeeccCCCC--ceEEEEEeCCCcEEE
Q 021036 147 QVLLVTGSSDGSVRIWDGYIQE--LQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPR--LMLLAVGKGSGSFDL 222 (318)
Q Consensus 147 ~~~l~s~~~d~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~--~~~l~~~~~dg~i~v 222 (318)
+++|++|+.|++|++||+++++ ....+. .|...|.+++|+ |+ +.+|++|+.|+.|++
T Consensus 71 ~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~--------------~h~~~V~~v~~~-----p~~~g~~lasgs~D~~i~l 131 (316)
T 3bg1_A 71 GNILASCSYDRKVIIWREENGTWEKSHEHA--------------GHDSSVNSVCWA-----PHDYGLILACGSSDGAISL 131 (316)
T ss_dssp SSCEEEEETTSCEEEECCSSSCCCEEEEEC--------------CCSSCCCEEEEC-----CTTTCSCEEEECSSSCEEE
T ss_pred CCEEEEEECCCEEEEEECCCCcceEEEEcc--------------CCCCceEEEEEC-----CCCCCcEEEEEcCCCCEEE
Confidence 7899999999999999998764 222332 355589999999 76 789999999999999
Q ss_pred eeeccCCCeeeEeeeeecccCceeEEEEcCC-----------------CCEEEEecCCCcEEEEEecCCce-eeeecCCC
Q 021036 223 WKCDISCNKFDKVGSYNAHDQVVTGLAWAFD-----------------GCCLYSCSQDNFVRSWIFHGNSL-SQVSIPTN 284 (318)
Q Consensus 223 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----------------~~~l~s~~~d~~v~iwd~~~~~~-~~~~~~~~ 284 (318)
|++.... .+.....+.+|...|.+++|+|+ +.+|++|+.|++|++||++.... ...
T Consensus 132 wd~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~----- 205 (316)
T 3bg1_A 132 LTYTGEG-QWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEE----- 205 (316)
T ss_dssp EEECSSS-CEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEE-----
T ss_pred EecCCCC-CcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCcccee-----
Confidence 9653221 23334556789999999999997 46899999999999999975421 111
Q ss_pred CCCccccccCCCcceeeeEEEEcCCC----cEEEEEe
Q 021036 285 TPGLQSCTDLPDAFVSCLGMAVSPGN----LVVAMVQ 317 (318)
Q Consensus 285 ~~~~~~~~~~~~h~~~v~~v~~sp~~----~~l~~~~ 317 (318)
..+.+|...|++++|+|++ .+||++.
T Consensus 206 -------~~l~~h~~~V~~v~~sp~~~~~~~~las~s 235 (316)
T 3bg1_A 206 -------QKLEAHSDWVRDVAWAPSIGLPTSTIASCS 235 (316)
T ss_dssp -------ECCBCCSSCEEEEECCCCSSCSCCEEEEEE
T ss_pred -------eecccCCCceEEEEecCCCCCCCceEEEEc
Confidence 1344577899999999986 7888874
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=221.25 Aligned_cols=233 Identities=10% Similarity=0.116 Sum_probs=173.3
Q ss_pred CCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCC
Q 021036 15 SNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSG 94 (318)
Q Consensus 15 ~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg 94 (318)
.+...+++++.|+.+++||+.+++....+. .|... +.+++|+|++ ++|++|+.||
T Consensus 107 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~h~~~---v~~~~~~~~~------------------~~l~s~s~d~ 161 (420)
T 3vl1_A 107 LQMRRFILGTTEGDIKVLDSNFNLQREIDQ----AHVSE---ITKLKFFPSG------------------EALISSSQDM 161 (420)
T ss_dssp SSSCEEEEEETTSCEEEECTTSCEEEEETT----SSSSC---EEEEEECTTS------------------SEEEEEETTS
T ss_pred cCCCEEEEEECCCCEEEEeCCCcceeeecc----cccCc---cEEEEECCCC------------------CEEEEEeCCC
Confidence 455678999999999999998765432221 13332 3346666655 9999999999
Q ss_pred cEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeec
Q 021036 95 KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAE 174 (318)
Q Consensus 95 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 174 (318)
.|++||+.+++ .+..+.+|...|.+++| ++++++|++++.|++|++||+++++....+.
T Consensus 162 ~i~iwd~~~~~--------------~~~~~~~h~~~v~~~~~-------~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 220 (420)
T 3vl1_A 162 QLKIWSVKDGS--------------NPRTLIGHRATVTDIAI-------IDRGRNVLSASLDGTIRLWECGTGTTIHTFN 220 (420)
T ss_dssp EEEEEETTTCC--------------CCEEEECCSSCEEEEEE-------ETTTTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred eEEEEeCCCCc--------------CceEEcCCCCcEEEEEE-------cCCCCEEEEEcCCCcEEEeECCCCceeEEee
Confidence 99999999854 45677899999999999 8899999999999999999999998888776
Q ss_pred ccccccccceee----------eeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeee-ecccC
Q 021036 175 AHCVPFSLLKEV----------VTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSY-NAHDQ 243 (318)
Q Consensus 175 ~~~~~~~~~~~~----------~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~-~~h~~ 243 (318)
.+..+...+... ...+...+.+++|+ |++++|++|+.||.|++| |.++.+ .+..+ ..|..
T Consensus 221 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~l~~~~~dg~i~i~--d~~~~~--~~~~~~~~~~~ 291 (420)
T 3vl1_A 221 RKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFG-----TYGKYVIAGHVSGVITVH--NVFSKE--QTIQLPSKFTC 291 (420)
T ss_dssp BTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSS-----CTTEEEEEEETTSCEEEE--ETTTCC--EEEEECCTTSS
T ss_pred cCCCCCCCccEEEEecCCcceeeecccCcccceEEc-----CCCCEEEEEcCCCeEEEE--ECCCCc--eeEEcccccCC
Confidence 543221111110 11123456666677 899999999999999999 555554 33333 45889
Q ss_pred ceeEEEEcCCCC-EEEEecCCCcEEEEEecCCce--eeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 244 VVTGLAWAFDGC-CLYSCSQDNFVRSWIFHGNSL--SQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 244 ~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
.|.+++|+|++. +|++++.||.|++||++++.. ..+..+ |...|.++.| +++++|+++.
T Consensus 292 ~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~--------------~~~~v~~~~~-~~~~~l~s~~ 353 (420)
T 3vl1_A 292 SCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLIN--------------EGTPINNVYF-AAGALFVSSG 353 (420)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEES--------------TTSCEEEEEE-ETTEEEEEET
T ss_pred CceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhcc--------------CCCCceEEEe-CCCCEEEEec
Confidence 999999999998 999999999999999987543 333322 2347788755 5778888873
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=216.33 Aligned_cols=239 Identities=13% Similarity=0.131 Sum_probs=177.5
Q ss_pred ccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcE
Q 021036 17 THPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKV 96 (318)
Q Consensus 17 ~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i 96 (318)
...+++|+.|+.|++||+.+++.+..+.. |... +.+++|+|. ++++|++|+.||.|
T Consensus 85 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~----~~~~---i~~~~~~~~-----------------~~~~l~s~~~dg~i 140 (366)
T 3k26_A 85 HPLLAVAGSRGIIRIINPITMQCIKHYVG----HGNA---INELKFHPR-----------------DPNLLLSVSKDHAL 140 (366)
T ss_dssp CEEEEEEETTCEEEEECTTTCCEEEEEES----CCSC---EEEEEECSS-----------------CTTEEEEEETTSCE
T ss_pred CCEEEEecCCCEEEEEEchhceEeeeecC----CCCc---EEEEEECCC-----------------CCCEEEEEeCCCeE
Confidence 35689999999999999998776444432 3333 444777772 24999999999999
Q ss_pred EEEEccCCccccccccccCCceeEEeee---ccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeee
Q 021036 97 SLWRICVPKCYSVEDCKVPTTAVLIGLF---QAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSA 173 (318)
Q Consensus 97 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 173 (318)
++||+.+++ .+..+ .+|...|.+++| ++++++|++++.||.|++||+++++....+
T Consensus 141 ~iwd~~~~~--------------~~~~~~~~~~~~~~v~~~~~-------~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 199 (366)
T 3k26_A 141 RLWNIQTDT--------------LVAIFGGVEGHRDEVLSADY-------DLLGEKIMSCGMDHSLKLWRINSKRMMNAI 199 (366)
T ss_dssp EEEETTTTE--------------EEEEECSTTSCSSCEEEEEE-------CTTSSEEEEEETTSCEEEEESCSHHHHHHH
T ss_pred EEEEeecCe--------------EEEEecccccccCceeEEEE-------CCCCCEEEEecCCCCEEEEECCCCcccccc
Confidence 999999854 44455 789999999999 899999999999999999999987655433
Q ss_pred cccc------c--cc------ccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCC---------
Q 021036 174 EAHC------V--PF------SLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCN--------- 230 (318)
Q Consensus 174 ~~~~------~--~~------~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~--------- 230 (318)
.... . .+ .........|...|.+++|+ ++++++++.||.|++|++.....
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-------~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 272 (366)
T 3k26_A 200 KESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL-------GDLILSKSCENAIVCWKPGKMEDDIDKIKPSE 272 (366)
T ss_dssp HHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE-------TTEEEEECSSSEEEEEEESSTTCCGGGCCTTC
T ss_pred ceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc-------CCEEEEEecCCEEEEEeCCCccccccccccCC
Confidence 3200 0 00 00011223377789999996 46999999999999996543221
Q ss_pred -eeeEeeeeecccCceeEEEEcCC--CCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCC--cceeeeEEE
Q 021036 231 -KFDKVGSYNAHDQVVTGLAWAFD--GCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPD--AFVSCLGMA 305 (318)
Q Consensus 231 -~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~v~ 305 (318)
....+..+.+|...|++++|+|+ +++|++++.||.|++||+.++....... ..+.+ |...|.+++
T Consensus 273 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~----------~~~~~~~~~~~v~~~~ 342 (366)
T 3k26_A 273 SNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKC----------TTLTHHKCGAAIRQTS 342 (366)
T ss_dssp CCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEE----------EEECCTTCCSCEEEEE
T ss_pred cchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccc----------eEEcccccCCceEEEE
Confidence 11357778889999999999999 9999999999999999998865331000 01111 256999999
Q ss_pred EcCCCcEEEEEe
Q 021036 306 VSPGNLVVAMVQ 317 (318)
Q Consensus 306 ~sp~~~~l~~~~ 317 (318)
|+|++++|+++.
T Consensus 343 ~s~~~~~l~s~~ 354 (366)
T 3k26_A 343 FSRDSSILIAVC 354 (366)
T ss_dssp ECTTSSEEEEEE
T ss_pred eCCCCCeEEEEe
Confidence 999999999874
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-29 Score=218.47 Aligned_cols=256 Identities=17% Similarity=0.093 Sum_probs=186.2
Q ss_pred cceEEeeCCCceeEeecCCCC------CCCceecchhccccccccceeeeeccc----c---c-----------------
Q 021036 18 HPTVAASKSKGNSITKIPSNC------CLPLITADQYASRSAMLHSLAVAWSPV----L---R----------------- 67 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~w~p~----~---~----------------- 67 (318)
..+++++.|+.|++||+.+++ ....+.. |... +.+++|+|+ + .
T Consensus 27 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~----h~~~---v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~ 99 (397)
T 1sq9_A 27 SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFV----HKSG---LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRIT 99 (397)
T ss_dssp SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEEC----CTTC---EEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEE
T ss_pred CeEEEEcCCCEEEEEECCCcccccCCCcceEEec----CCCc---EEEEEEecccccCCccccEEEEEcCCCCEEEEEcc
Confidence 678999999999999999877 2222221 2222 333555544 3 1
Q ss_pred ------------CCCC-----cccccccCCC----CCccE-EEEecCCCcEEEEEccC------CccccccccccCCcee
Q 021036 68 ------------LSSK-----KYPVPQNGSS----NWFSI-LAVGGRSGKVSLWRICV------PKCYSVEDCKVPTTAV 119 (318)
Q Consensus 68 ------------~~~~-----~~~v~~~~~s----~~~~~-l~~g~~dg~i~iw~~~~------~~~~~~~~~~~~~~~~ 119 (318)
+..| ..+|.+++++ +++++ |++++.||.|++||+.+ ++... ..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~ 170 (397)
T 1sq9_A 100 REDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN---------WS 170 (397)
T ss_dssp ECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC---------CC
T ss_pred CCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceee---------cc
Confidence 2345 5889999999 99999 99999999999999987 44321 11
Q ss_pred EEeee-------ccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeec--
Q 021036 120 LIGLF-------QAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVN-- 190 (318)
Q Consensus 120 ~~~~~-------~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 190 (318)
....+ ..|...|.+++| ++++ +|++++.|+.|++||+++++....+... ..|
T Consensus 171 ~~~~~~~~~~~~~~~~~~i~~~~~-------~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----------~~h~~ 231 (397)
T 1sq9_A 171 PTLELQGTVESPMTPSQFATSVDI-------SERG-LIATGFNNGTVQISELSTLRPLYNFESQ-----------HSMIN 231 (397)
T ss_dssp CEEEEEEEECCSSSSCCCCCEEEE-------CTTS-EEEEECTTSEEEEEETTTTEEEEEEECC-----------C---C
T ss_pred CcceeeeeeccccCCCCCceEEEE-------CCCc-eEEEEeCCCcEEEEECCCCceeEEEecc-----------ccccc
Confidence 11134 458899999999 8899 9999999999999999988877766540 012
Q ss_pred -ccceeEEEEeeccCCCCceEEEEEeCC---CcEEEeeeccCCCeeeEeeeeec-------------ccCceeEEEEcCC
Q 021036 191 -TVPISVLSLILPVQSPRLMLLAVGKGS---GSFDLWKCDISCNKFDKVGSYNA-------------HDQVVTGLAWAFD 253 (318)
Q Consensus 191 -~~~v~~l~~~~~~~~~~~~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~-------------h~~~v~~~~~~~~ 253 (318)
...|.+++|+ |++.+|++++.| |.|++| +.++.+ .+..+.+ |...|.+++|+|+
T Consensus 232 ~~~~i~~i~~~-----~~~~~l~~~~~d~~~g~i~i~--d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 302 (397)
T 1sq9_A 232 NSNSIRSVKFS-----PQGSLLAIAHDSNSFGCITLY--ETEFGE--RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS 302 (397)
T ss_dssp CCCCEEEEEEC-----SSTTEEEEEEEETTEEEEEEE--ETTTCC--EEEEECBC--------CCBSBSSCEEEEEECSS
T ss_pred cCCccceEEEC-----CCCCEEEEEecCCCCceEEEE--ECCCCc--ccceeccCcccccccccccccCCcEEEEEECCC
Confidence 4489999999 999999999999 999999 555655 6677777 9999999999999
Q ss_pred CCEEEEecCCCcEEEEEecCCceeeeecCC-CC-C----Cccc-cccCCCcceeeeEEEEcCCC----------cEEEEE
Q 021036 254 GCCLYSCSQDNFVRSWIFHGNSLSQVSIPT-NT-P----GLQS-CTDLPDAFVSCLGMAVSPGN----------LVVAMV 316 (318)
Q Consensus 254 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~-~~-~----~~~~-~~~~~~h~~~v~~v~~sp~~----------~~l~~~ 316 (318)
+++|++++.|+.|++||+++++........ .. . ...+ ......|...|++++|+|++ ++|+++
T Consensus 303 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~ 382 (397)
T 1sq9_A 303 GETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCV 382 (397)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEE
T ss_pred CCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEe
Confidence 999999999999999999887654322200 00 0 0000 00112247899999999998 688887
Q ss_pred e
Q 021036 317 Q 317 (318)
Q Consensus 317 ~ 317 (318)
.
T Consensus 383 ~ 383 (397)
T 1sq9_A 383 C 383 (397)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-29 Score=214.12 Aligned_cols=242 Identities=12% Similarity=0.098 Sum_probs=170.5
Q ss_pred ccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcE
Q 021036 17 THPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKV 96 (318)
Q Consensus 17 ~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i 96 (318)
...+++|+.|+.+++||+.+......... ..|... +.+++|+|++ ++|++++.||.|
T Consensus 54 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~~h~~~---v~~~~~~~~~------------------~~l~s~~~dg~v 110 (368)
T 3mmy_A 54 GNFLIAGSWANDVRCWEVQDSGQTIPKAQ--QMHTGP---VLDVCWSDDG------------------SKVFTASCDKTA 110 (368)
T ss_dssp SEEEEEEETTSEEEEEEECTTSCEEEEEE--EECSSC---EEEEEECTTS------------------SEEEEEETTSEE
T ss_pred ceEEEEECCCCcEEEEEcCCCCceeEEEe--ccccCC---EEEEEECcCC------------------CEEEEEcCCCcE
Confidence 57799999999999999987322111111 113332 3346666655 999999999999
Q ss_pred EEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeeccc
Q 021036 97 SLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAH 176 (318)
Q Consensus 97 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 176 (318)
++||+++++ .+ .+..|...|.+++|.| ++++.+|++++.|+.|++||+++++....+..+
T Consensus 111 ~iwd~~~~~--------------~~-~~~~~~~~v~~~~~~~-----~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 170 (368)
T 3mmy_A 111 KMWDLSSNQ--------------AI-QIAQHDAPVKTIHWIK-----APNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP 170 (368)
T ss_dssp EEEETTTTE--------------EE-EEEECSSCEEEEEEEE-----CSSCEEEEEEETTSEEEEECSSCSSCSEEEECS
T ss_pred EEEEcCCCC--------------ce-eeccccCceEEEEEEe-----CCCCCEEEEccCCCcEEEEECCCCcEEEEEecC
Confidence 999999754 22 3567999999999944 467889999999999999999988877666544
Q ss_pred ccccccc---------------------------eeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCC
Q 021036 177 CVPFSLL---------------------------KEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISC 229 (318)
Q Consensus 177 ~~~~~~~---------------------------~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~ 229 (318)
....... ..........+.++.+..... .....+++++.||.|++|+++...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dg~i~i~~~~~~~ 249 (368)
T 3mmy_A 171 ERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQ-NKPTGFALGSIEGRVAIHYINPPN 249 (368)
T ss_dssp SCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTT-SCEEEEEEEETTSEEEEEESSCSC
T ss_pred CCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCC-CCCCeEEEecCCCcEEEEecCCCC
Confidence 3211100 011111223445555552111 122449999999999999654432
Q ss_pred CeeeEeeeeecccC------------ceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCc
Q 021036 230 NKFDKVGSYNAHDQ------------VVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDA 297 (318)
Q Consensus 230 ~~~~~~~~~~~h~~------------~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h 297 (318)
.. ..+..+.+|.. .|++++|+|++++|++++.||.|++||+.++.... .+.+|
T Consensus 250 ~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~--------------~~~~~ 314 (368)
T 3mmy_A 250 PA-KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLK--------------TSEQL 314 (368)
T ss_dssp HH-HHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE--------------ECCCC
T ss_pred cc-ccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEE--------------EecCC
Confidence 20 24556666665 79999999999999999999999999999876543 22345
Q ss_pred ceeeeEEEEcCCCcEEEEEe
Q 021036 298 FVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 298 ~~~v~~v~~sp~~~~l~~~~ 317 (318)
...|.+++|+|+|++|+++.
T Consensus 315 ~~~v~~~~~s~~g~~l~~~s 334 (368)
T 3mmy_A 315 DQPISACCFNHNGNIFAYAS 334 (368)
T ss_dssp SSCEEEEEECTTSSCEEEEE
T ss_pred CCCceEEEECCCCCeEEEEe
Confidence 67999999999999999874
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-28 Score=212.17 Aligned_cols=256 Identities=14% Similarity=0.142 Sum_probs=183.9
Q ss_pred CCCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCC-CccEEEEe
Q 021036 12 MKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSN-WFSILAVG 90 (318)
Q Consensus 12 ~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~-~~~~l~~g 90 (318)
+.+.+...+++++.|+.|++||+.+++....+..... .-.+.....+|..+|.++++++ ++++|+++
T Consensus 51 ~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 118 (408)
T 4a11_B 51 IEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAV------------CSIGRDHPDVHRYSVETVQWYPHDTGMFTSS 118 (408)
T ss_dssp ECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEE------------EEECTTCTTCCSSCEEEEEECTTCTTCEEEE
T ss_pred EecCCCCEEEEEcCCCeEEEEECCCCcccceEecccc------------ccccccccccCCCcEEEEEEccCCCcEEEEE
Confidence 4443567789999999999999999877666543211 0011112334666666666666 56899999
Q ss_pred cCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCccee
Q 021036 91 GRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQ 170 (318)
Q Consensus 91 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 170 (318)
+.||.|++||+.+++ ....+. +...+.++.|.|. .+++.++++++.|+.|++||+++++..
T Consensus 119 ~~d~~i~iwd~~~~~--------------~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~v~~~d~~~~~~~ 179 (408)
T 4a11_B 119 SFDKTLKVWDTNTLQ--------------TADVFN-FEETVYSHHMSPV----STKHCLVAVGTRGPKVQLCDLKSGSCS 179 (408)
T ss_dssp ETTSEEEEEETTTTE--------------EEEEEE-CSSCEEEEEECSS----CSSCCEEEEEESSSSEEEEESSSSCCC
T ss_pred eCCCeEEEeeCCCCc--------------cceecc-CCCceeeeEeecC----CCCCcEEEEEcCCCeEEEEeCCCccee
Confidence 999999999999854 334443 6778999999443 235569999999999999999988877
Q ss_pred eeecccccccccceeeeeecccceeEEEEeeccCCCCce-EEEEEeCCCcEEEeeeccCCCeeeE------------eee
Q 021036 171 KSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLM-LLAVGKGSGSFDLWKCDISCNKFDK------------VGS 237 (318)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~------------~~~ 237 (318)
..+..+. ..|.+++|+ |++. +|++|+.||.|++||+......... ...
T Consensus 180 ~~~~~~~--------------~~v~~~~~~-----~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (408)
T 4a11_B 180 HILQGHR--------------QEILAVSWS-----PRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESA 240 (408)
T ss_dssp EEECCCC--------------SCEEEEEEC-----SSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTS
T ss_pred eeecCCC--------------CcEEEEEEC-----CCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccc
Confidence 7665443 489999999 8887 6999999999999964332211101 111
Q ss_pred eecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCC----------------CCCcc------------
Q 021036 238 YNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTN----------------TPGLQ------------ 289 (318)
Q Consensus 238 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~----------------~~~~~------------ 289 (318)
..+|...|.+++|+|++.+|++++.|+.|++||+.++.......... ...+.
T Consensus 241 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d 320 (408)
T 4a11_B 241 NTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYT 320 (408)
T ss_dssp SCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEE
T ss_pred cccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEE
Confidence 25688999999999999999999999999999998755432111000 00000
Q ss_pred -----ccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 290 -----SCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 290 -----~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
....+.+|...|.+++|+|++++|+++.
T Consensus 321 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 353 (408)
T 4a11_B 321 VYSGEQITMLKGHYKTVDCCVFQSNFQELYSGS 353 (408)
T ss_dssp TTTCCEEEEECCCSSCEEEEEEETTTTEEEEEE
T ss_pred CcCCcceeeeccCCCeEEEEEEcCCCCEEEEEC
Confidence 0112347899999999999999999884
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-29 Score=214.68 Aligned_cols=264 Identities=11% Similarity=0.066 Sum_probs=183.4
Q ss_pred CcCCCCCccceEEeeC---CCceeEeecCCCCCCCceecchhccccccccceeeeecccc---c----------------
Q 021036 10 NKMKDSNTHPTVAASK---SKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVL---R---------------- 67 (318)
Q Consensus 10 ~~~~~~~~~~~~t~s~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~---~---------------- 67 (318)
-.+.+.+...+++++. |+.+++||+.+++....... .|... +.+++|+|+. .
T Consensus 24 ~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~---~~~~~---v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 97 (357)
T 3i2n_A 24 CKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREI---EKAKP---IKCGTFGATSLQQRYLATGDFGGNLHIWNL 97 (357)
T ss_dssp EEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEE---EESSC---EEEEECTTCCTTTCCEEEEETTSCEEEECT
T ss_pred EEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeee---cccCc---EEEEEEcCCCCCCceEEEecCCCeEEEEeC
Confidence 3445545556667776 99999999998765433221 23332 3345555541 1
Q ss_pred ---------CCCCccccccc------CCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeecccc----
Q 021036 68 ---------LSSKKYPVPQN------GSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHN---- 128 (318)
Q Consensus 68 ---------~~~~~~~v~~~------~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---- 128 (318)
+..|..+|.++ ++++++++|++++.||.|++||+.+++. .+..+..|.
T Consensus 98 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~-------------~~~~~~~~~~~~~ 164 (357)
T 3i2n_A 98 EAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD-------------PVANMEPVQGENK 164 (357)
T ss_dssp TSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSS-------------CSEEECCCTTSCC
T ss_pred CCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCC-------------cceeccccCCCCC
Confidence 34577888888 6788999999999999999999998642 234444443
Q ss_pred ccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCC--
Q 021036 129 SWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSP-- 206 (318)
Q Consensus 129 ~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~-- 206 (318)
..|.++.|.+.. ++++++|++++.|+.|++||+++++.... ..+...|.+++|+ |
T Consensus 165 ~~v~~~~~~~~~---~~~~~~l~~~~~d~~i~i~d~~~~~~~~~---------------~~~~~~v~~~~~~-----~~~ 221 (357)
T 3i2n_A 165 RDCWTVAFGNAY---NQEERVVCAGYDNGDIKLFDLRNMALRWE---------------TNIKNGVCSLEFD-----RKD 221 (357)
T ss_dssp CCEEEEEEECCC---C-CCCEEEEEETTSEEEEEETTTTEEEEE---------------EECSSCEEEEEES-----CSS
T ss_pred CceEEEEEEecc---CCCCCEEEEEccCCeEEEEECccCceeee---------------cCCCCceEEEEcC-----CCC
Confidence 389999842211 68899999999999999999998775433 2244589999999 8
Q ss_pred -CceEEEEEeCCCcEEEeeeccCCCeee---EeeeeecccCceeEEEEcCCCC-EEEEecCCCcEEEEEecCCceeeeec
Q 021036 207 -RLMLLAVGKGSGSFDLWKCDISCNKFD---KVGSYNAHDQVVTGLAWAFDGC-CLYSCSQDNFVRSWIFHGNSLSQVSI 281 (318)
Q Consensus 207 -~~~~l~~~~~dg~i~vw~~~~~~~~~~---~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~ 281 (318)
++.+|++++.||.|++|++. +.+.. ....+.+|...|++++|+|++. +|++++.||.|++||++.+.......
T Consensus 222 ~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 299 (357)
T 3i2n_A 222 ISMNKLVATSLEGKFHVFDMR--TQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKD 299 (357)
T ss_dssp SSCCEEEEEESTTEEEEEEEE--EEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CC
T ss_pred CCCCEEEEECCCCeEEEEeCc--CCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccccccc
Confidence 89999999999999999654 33210 1123448999999999999998 89999999999999998754332111
Q ss_pred CCCC-CCcc----ccccCCCcceeeeEEEEcCCCcEEE-EEe
Q 021036 282 PTNT-PGLQ----SCTDLPDAFVSCLGMAVSPGNLVVA-MVQ 317 (318)
Q Consensus 282 ~~~~-~~~~----~~~~~~~h~~~v~~v~~sp~~~~l~-~~~ 317 (318)
.... .... ....+.+|...|.+++|+|++++|+ ++.
T Consensus 300 ~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~ 341 (357)
T 3i2n_A 300 SEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSS 341 (357)
T ss_dssp TTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEE
T ss_pred CCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEec
Confidence 1100 0000 1123456888999999999999887 553
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-29 Score=217.29 Aligned_cols=223 Identities=12% Similarity=0.084 Sum_probs=168.7
Q ss_pred EEeeCCCceeEeecCCCCCC-CceecchhccccccccceeeeecccccCCCCcccccccCCCC-CccEEEEecCCCcEEE
Q 021036 21 VAASKSKGNSITKIPSNCCL-PLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSN-WFSILAVGGRSGKVSL 98 (318)
Q Consensus 21 ~t~s~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~-~~~~l~~g~~dg~i~i 98 (318)
++++.||.|++|++...... ..+. .+.+|..+|.++++++ ++++|++|+.||.|++
T Consensus 51 ~~~~~~g~i~v~~~~~~~~~~~~~~----------------------~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~v 108 (402)
T 2aq5_A 51 CEASGGGAFLVLPLGKTGRVDKNVP----------------------LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMV 108 (402)
T ss_dssp BCCSSSCCEEEEETTCCEECCTTCC----------------------CBCCCSSCEEEEEECTTCTTEEEEEETTSEEEE
T ss_pred EEEcCCCEEEEEECccCCCCCCCCc----------------------eEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEE
Confidence 45789999999999664321 1111 1223444444444444 4599999999999999
Q ss_pred EEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCC-cEEEEEeCCCcEEEEECCCcceeeee--cc
Q 021036 99 WRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQ-VLLVTGSSDGSVRIWDGYIQELQKSA--EA 175 (318)
Q Consensus 99 w~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~--~~ 175 (318)
|++.++.... ...+.+..+.+|...|.+++| ++++ .+|++++.|+.|++||+++++....+ ..
T Consensus 109 w~~~~~~~~~-------~~~~~~~~~~~h~~~v~~~~~-------~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 174 (402)
T 2aq5_A 109 WEIPDGGLVL-------PLREPVITLEGHTKRVGIVAW-------HPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDV 174 (402)
T ss_dssp EECCTTCCSS-------CBCSCSEEEECCSSCEEEEEE-------CSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTT
T ss_pred EEccCCCCcc-------ccCCceEEecCCCCeEEEEEE-------CcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCC
Confidence 9998763210 001345678899999999999 8887 69999999999999999998877766 43
Q ss_pred cccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeee-ecccCc-eeEEEEcCC
Q 021036 176 HCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSY-NAHDQV-VTGLAWAFD 253 (318)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~-~~h~~~-v~~~~~~~~ 253 (318)
+ ...|.+++|+ |++.+|++++.||.|++| |.++++ .+..+ .+|.+. +.++.|+|+
T Consensus 175 ~--------------~~~v~~~~~~-----~~~~~l~~~~~d~~i~iw--d~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 231 (402)
T 2aq5_A 175 H--------------PDTIYSVDWS-----RDGALICTSCRDKRVRVI--EPRKGT--VVAEKDRPHEGTRPVHAVFVSE 231 (402)
T ss_dssp C--------------CSCEEEEEEC-----TTSSCEEEEETTSEEEEE--ETTTTE--EEEEEECSSCSSSCCEEEECST
T ss_pred C--------------CCceEEEEEC-----CCCCEEEEEecCCcEEEE--eCCCCc--eeeeeccCCCCCcceEEEEcCC
Confidence 3 3489999999 999999999999999999 566666 56666 677765 899999999
Q ss_pred CCEEEEe---cCCCcEEEEEecCCce-eeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 254 GCCLYSC---SQDNFVRSWIFHGNSL-SQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 254 ~~~l~s~---~~d~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
+.+|++| +.|+.|++||+++... ....... |...+.+++|+|++++|++
T Consensus 232 ~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~-------------~~~~v~~~~~s~~~~~l~~ 284 (402)
T 2aq5_A 232 GKILTTGFSRMSERQVALWDTKHLEEPLSLQELD-------------TSSGVLLPFFDPDTNIVYL 284 (402)
T ss_dssp TEEEEEEECTTCCEEEEEEETTBCSSCSEEEECC-------------CCSSCEEEEEETTTTEEEE
T ss_pred CcEEEEeccCCCCceEEEEcCccccCCceEEecc-------------CCCceeEEEEcCCCCEEEE
Confidence 9999999 8999999999987543 2111111 3347899999999998864
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-29 Score=217.06 Aligned_cols=231 Identities=16% Similarity=0.134 Sum_probs=171.6
Q ss_pred CCCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCc-cEEEEe
Q 021036 12 MKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWF-SILAVG 90 (318)
Q Consensus 12 ~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~-~~l~~g 90 (318)
+.+.+...+++|+.|++|++||+.++........ +...+.+|...|.++++++++ ++|++|
T Consensus 89 ~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~------------------~~~~~~~h~~~v~~~~~~p~~~~~l~s~ 150 (402)
T 2aq5_A 89 WCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLRE------------------PVITLEGHTKRVGIVAWHPTAQNVLLSA 150 (402)
T ss_dssp ECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCS------------------CSEEEECCSSCEEEEEECSSBTTEEEEE
T ss_pred eCCCCCCEEEEEeCCCeEEEEEccCCCCccccCC------------------ceEEecCCCCeEEEEEECcCCCCEEEEE
Confidence 3333667889999999999999998754322110 011122344444444555544 699999
Q ss_pred cCCCcEEEEEccCCccccccccccCCceeEEeee--ccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcc
Q 021036 91 GRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLF--QAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQE 168 (318)
Q Consensus 91 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 168 (318)
+.||.|++||+.+++ .+..+ .+|...|.+++| ++++++|++++.|+.|++||+++++
T Consensus 151 ~~dg~i~iwd~~~~~--------------~~~~~~~~~~~~~v~~~~~-------~~~~~~l~~~~~d~~i~iwd~~~~~ 209 (402)
T 2aq5_A 151 GCDNVILVWDVGTGA--------------AVLTLGPDVHPDTIYSVDW-------SRDGALICTSCRDKRVRVIEPRKGT 209 (402)
T ss_dssp ETTSCEEEEETTTTE--------------EEEEECTTTCCSCEEEEEE-------CTTSSCEEEEETTSEEEEEETTTTE
T ss_pred cCCCEEEEEECCCCC--------------ccEEEecCCCCCceEEEEE-------CCCCCEEEEEecCCcEEEEeCCCCc
Confidence 999999999999853 55667 789999999999 8899999999999999999999988
Q ss_pred eeeee-cccccccccceeeeeecccceeEEEEeeccCCCCceEEEEE---eCCCcEEEeeeccCCCeeeEeeee-ecccC
Q 021036 169 LQKSA-EAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVG---KGSGSFDLWKCDISCNKFDKVGSY-NAHDQ 243 (318)
Q Consensus 169 ~~~~~-~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~---~~dg~i~vw~~~~~~~~~~~~~~~-~~h~~ 243 (318)
....+ ..+.. ..+..+.|+ |++.+|++| +.|+.|++|| .+.... ++... ..|..
T Consensus 210 ~~~~~~~~~~~-------------~~~~~~~~~-----~~~~~l~~g~~~~~d~~i~iwd--~~~~~~-~~~~~~~~~~~ 268 (402)
T 2aq5_A 210 VVAEKDRPHEG-------------TRPVHAVFV-----SEGKILTTGFSRMSERQVALWD--TKHLEE-PLSLQELDTSS 268 (402)
T ss_dssp EEEEEECSSCS-------------SSCCEEEEC-----STTEEEEEEECTTCCEEEEEEE--TTBCSS-CSEEEECCCCS
T ss_pred eeeeeccCCCC-------------CcceEEEEc-----CCCcEEEEeccCCCCceEEEEc--CccccC-CceEEeccCCC
Confidence 77766 44432 147899999 999999999 7999999995 444331 12222 24677
Q ss_pred ceeEEEEcCCCCEEE-EecCCCcEEEEEecCCc--eeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 244 VVTGLAWAFDGCCLY-SCSQDNFVRSWIFHGNS--LSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 244 ~v~~~~~~~~~~~l~-s~~~d~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
.+.+++|+|++++|+ +++.|+.|++||+.++. ...+..+. |...|.+++|+|++.++++
T Consensus 269 ~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~-------------~~~~v~~~~~sp~~~~~~s 330 (402)
T 2aq5_A 269 GVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS-------------SKESQRGMGYMPKRGLEVN 330 (402)
T ss_dssp SCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC-------------CSSCCSEEEECCGGGSCGG
T ss_pred ceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc-------------cCCcccceEEeccccccee
Confidence 899999999999886 56689999999999876 33333222 2348899999999887654
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.97 E-value=9e-30 Score=217.50 Aligned_cols=244 Identities=16% Similarity=0.148 Sum_probs=178.9
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhc-cccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCC
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYA-SRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSG 94 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg 94 (318)
....+++++.++.+++||+.+++.+..+...... +.. .+.+++|+|+. ..++++|++|+.||
T Consensus 33 ~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~--------------~~~~~~l~~~~~dg 95 (366)
T 3k26_A 33 GDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADE---NFYTCAWTYDS--------------NTSHPLLAVAGSRG 95 (366)
T ss_dssp TSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTC---CEEEEEEEECT--------------TTCCEEEEEEETTC
T ss_pred CCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCC---cEEEEEeccCC--------------CCCCCEEEEecCCC
Confidence 3455777788889999999987765555432111 222 24557888773 01137999999999
Q ss_pred cEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCC-CCcEEEEEeCCCcEEEEECCCcceeeee
Q 021036 95 KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSN-PQVLLVTGSSDGSVRIWDGYIQELQKSA 173 (318)
Q Consensus 95 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 173 (318)
.|++||+.++ +.+..+.+|...|.+++| ++ ++++|++++.||.|++||+++++....+
T Consensus 96 ~i~v~d~~~~--------------~~~~~~~~~~~~i~~~~~-------~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 154 (366)
T 3k26_A 96 IIRIINPITM--------------QCIKHYVGHGNAINELKF-------HPRDPNLLLSVSKDHALRLWNIQTDTLVAIF 154 (366)
T ss_dssp EEEEECTTTC--------------CEEEEEESCCSCEEEEEE-------CSSCTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred EEEEEEchhc--------------eEeeeecCCCCcEEEEEE-------CCCCCCEEEEEeCCCeEEEEEeecCeEEEEe
Confidence 9999999984 456778899999999999 77 8899999999999999999988877665
Q ss_pred cccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeee--------------------
Q 021036 174 EAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFD-------------------- 233 (318)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~-------------------- 233 (318)
... ..|...|.+++|+ |++.+|++++.||.|++|| .++.+..
T Consensus 155 ~~~-----------~~~~~~v~~~~~~-----~~~~~l~~~~~dg~i~i~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (366)
T 3k26_A 155 GGV-----------EGHRDEVLSADYD-----LLGEKIMSCGMDHSLKLWR--INSKRMMNAIKESYDYNPNKTNRPFIS 216 (366)
T ss_dssp CST-----------TSCSSCEEEEEEC-----TTSSEEEEEETTSCEEEEE--SCSHHHHHHHHHHHTCCGGGCSSCCCC
T ss_pred ccc-----------ccccCceeEEEEC-----CCCCEEEEecCCCCEEEEE--CCCCccccccceeEEecCCCCcccccc
Confidence 211 1244589999999 9999999999999999995 4443210
Q ss_pred ------EeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEc
Q 021036 234 ------KVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVS 307 (318)
Q Consensus 234 ------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s 307 (318)
......+|...|.+++|+ +.+|++++.|+.|++||+.+....................+..|...|.+++|+
T Consensus 217 ~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 294 (366)
T 3k26_A 217 QKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFS 294 (366)
T ss_dssp EEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCE
T ss_pred eeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEc
Confidence 011223489999999999 779999999999999999875442211111111111122344677789999999
Q ss_pred CC--CcEEEEEe
Q 021036 308 PG--NLVVAMVQ 317 (318)
Q Consensus 308 p~--~~~l~~~~ 317 (318)
|+ +++|++|.
T Consensus 295 ~~~~~~~l~~~~ 306 (366)
T 3k26_A 295 MDFWQKMLALGN 306 (366)
T ss_dssp ECTTSSEEEEEC
T ss_pred CCCCCcEEEEEe
Confidence 99 99999874
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-28 Score=215.08 Aligned_cols=233 Identities=20% Similarity=0.270 Sum_probs=175.7
Q ss_pred eEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEEE
Q 021036 20 TVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLW 99 (318)
Q Consensus 20 ~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw 99 (318)
+++.+.|++|++||+.++++.+.+.... |... +.+++|+|++ ++|++|+.||.|+||
T Consensus 118 ~lAvgld~tV~lWd~~tg~~~~~~~~~~--~~~~---V~sv~fspdg------------------~~lasgs~Dg~v~iW 174 (420)
T 4gga_A 118 VLAVALDNSVYLWSASSGDILQLLQMEQ--PGEY---ISSVAWIKEG------------------NYLAVGTSSAEVQLW 174 (420)
T ss_dssp EEEEEETTEEEEEETTTCCEEEEEECCS--TTCC---EEEEEECTTS------------------SEEEEEETTSCEEEE
T ss_pred EEEEEeCCEEEEEECCCCCEEEEEEecC--CCCc---EEEEEECCCC------------------CEEEEEECCCeEEEE
Confidence 4555669999999999998766554322 3332 4457777766 999999999999999
Q ss_pred EccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcce-eeeeccccc
Q 021036 100 RICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQEL-QKSAEAHCV 178 (318)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~-~~~~~~~~~ 178 (318)
|++++ +.++.+.+|...+.++.| ++.+|++|+.|+.+++||...... ...+.
T Consensus 175 d~~~~--------------~~~~~~~~h~~~v~~~s~---------~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~---- 227 (420)
T 4gga_A 175 DVQQQ--------------KRLRNMTSHSARVGSLSW---------NSYILSSGSRSGHIHHHDVRVAEHHVATLS---- 227 (420)
T ss_dssp ETTTT--------------EEEEEECCCSSCEEEEEE---------ETTEEEEEETTSEEEEEETTSSSCEEEEEE----
T ss_pred EcCCC--------------cEEEEEeCCCCceEEEee---------CCCEEEEEeCCCceeEeeecccceeeEEec----
Confidence 99984 467788999999999988 357899999999999999886533 33333
Q ss_pred ccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCC-EE
Q 021036 179 PFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGC-CL 257 (318)
Q Consensus 179 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l 257 (318)
.|...+..+.++ |++.++++++.|+.+++|+..........+.....|...|.+++|+|.+. ++
T Consensus 228 ----------~h~~~~~~~~~~-----~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~l 292 (420)
T 4gga_A 228 ----------GHSQEVCGLRWA-----PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVL 292 (420)
T ss_dssp ----------CCSSCEEEEEEC-----TTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEE
T ss_pred ----------ccccceeeeeec-----CCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEE
Confidence 345588999998 99999999999999999965433333334566778999999999999755 55
Q ss_pred EE--ecCCCcEEEEEecCCceeee----------ecCCCCCCcc---cc----------------ccCCCcceeeeEEEE
Q 021036 258 YS--CSQDNFVRSWIFHGNSLSQV----------SIPTNTPGLQ---SC----------------TDLPDAFVSCLGMAV 306 (318)
Q Consensus 258 ~s--~~~d~~v~iwd~~~~~~~~~----------~~~~~~~~~~---~~----------------~~~~~h~~~v~~v~~ 306 (318)
++ |+.|++|++||+.++..... .+.+....++ +. ..+.+|.+.|++++|
T Consensus 293 a~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~ 372 (420)
T 4gga_A 293 ATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTM 372 (420)
T ss_dssp EEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred EEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEE
Confidence 54 56899999999987654321 1222222222 11 124589999999999
Q ss_pred cCCCcEEEEEe
Q 021036 307 SPGNLVVAMVQ 317 (318)
Q Consensus 307 sp~~~~l~~~~ 317 (318)
+|||++|++|.
T Consensus 373 spdg~~l~S~s 383 (420)
T 4gga_A 373 SPDGATVASAA 383 (420)
T ss_dssp CTTSSCEEEEE
T ss_pred cCCCCEEEEEe
Confidence 99999999984
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.9e-29 Score=216.37 Aligned_cols=246 Identities=12% Similarity=0.044 Sum_probs=175.3
Q ss_pred CCCCCccceEEeeCCCceeEeecCCCCCCCce-ecchhccccccccceeeeecccccCCCCcccccccCCCCC-ccEEEE
Q 021036 12 MKDSNTHPTVAASKSKGNSITKIPSNCCLPLI-TADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNW-FSILAV 89 (318)
Q Consensus 12 ~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~-~~~l~~ 89 (318)
+.+.+...+++++.|+.|++||+.+++..... ..... .....|..+|.+++++++ +.+|++
T Consensus 121 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~-----------------~~~~~~~~~v~~~~~~~~~~~~l~~ 183 (416)
T 2pm9_A 121 FNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTP-----------------GQSMSSVDEVISLAWNQSLAHVFAS 183 (416)
T ss_dssp ECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCC-----------------CCSCCSSCCCCEEEECSSCTTEEEE
T ss_pred EcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccc-----------------ccccCCCCCeeEEEeCCCCCcEEEE
Confidence 33334677899999999999999987621110 00000 011223333444444444 589999
Q ss_pred ecCCCcEEEEEccCCccccccccccCCceeEEeeeccc------cccEEEEEeeeecCCCCCCC-cEEEEEeCCC---cE
Q 021036 90 GGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAH------NSWITSISLAVLSSDSSNPQ-VLLVTGSSDG---SV 159 (318)
Q Consensus 90 g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h------~~~v~~~~~~p~~~~~~~~~-~~l~s~~~d~---~v 159 (318)
++.||.|++||+++++ .+..+..| ...|.+++| ++++ .+|++++.|+ .|
T Consensus 184 ~~~dg~v~iwd~~~~~--------------~~~~~~~~~~~~~~~~~v~~~~~-------~~~~~~~l~~~~~d~~~~~i 242 (416)
T 2pm9_A 184 AGSSNFASIWDLKAKK--------------EVIHLSYTSPNSGIKQQLSVVEW-------HPKNSTRVATATGSDNDPSI 242 (416)
T ss_dssp ESSSSCEEEEETTTTE--------------EEEEECCCCCSSCCCCCEEEEEE-------CSSCTTEEEEEECCSSSCCC
T ss_pred EcCCCCEEEEECCCCC--------------cceEEeccccccccCCceEEEEE-------CCCCCCEEEEEECCCCCceE
Confidence 9999999999999854 44455554 789999999 7776 6999999998 99
Q ss_pred EEEECCCc-ceeeeecccccccccceeeeeecccceeEEEEeeccCCC-CceEEEEEeCCCcEEEeeeccCCCeeeEeee
Q 021036 160 RIWDGYIQ-ELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSP-RLMLLAVGKGSGSFDLWKCDISCNKFDKVGS 237 (318)
Q Consensus 160 ~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 237 (318)
++||++++ +....+. ..|...|.+++|+ | ++.+|++++.||.|++| +.++++ ++..
T Consensus 243 ~~~d~~~~~~~~~~~~-------------~~~~~~v~~~~~s-----~~~~~~l~s~~~dg~v~~w--d~~~~~--~~~~ 300 (416)
T 2pm9_A 243 LIWDLRNANTPLQTLN-------------QGHQKGILSLDWC-----HQDEHLLLSSGRDNTVLLW--NPESAE--QLSQ 300 (416)
T ss_dssp CEEETTSTTSCSBCCC-------------SCCSSCEEEEEEC-----SSCSSCEEEEESSSEEEEE--CSSSCC--EEEE
T ss_pred EEEeCCCCCCCcEEee-------------cCccCceeEEEeC-----CCCCCeEEEEeCCCCEEEe--eCCCCc--ccee
Confidence 99999986 3444443 0344589999999 7 89999999999999999 566665 6778
Q ss_pred eecccCceeEEEEcCCC-CEEEEecCCCcEEEEEecCCceeeeecC-------------CCCCCcc--------ccccCC
Q 021036 238 YNAHDQVVTGLAWAFDG-CCLYSCSQDNFVRSWIFHGNSLSQVSIP-------------TNTPGLQ--------SCTDLP 295 (318)
Q Consensus 238 ~~~h~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~-------------~~~~~~~--------~~~~~~ 295 (318)
+.+|...|.+++|+|++ .+|++++.|+.|++||+.+......... .....++ ......
T Consensus 301 ~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (416)
T 2pm9_A 301 FPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPT 380 (416)
T ss_dssp EECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCS
T ss_pred ecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCc
Confidence 88999999999999998 7999999999999999987543221100 0000000 001112
Q ss_pred CcceeeeEEEEcCCCcEEEEEe
Q 021036 296 DAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 296 ~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
.|..++.+++|+|||++||++.
T Consensus 381 ~~~~~~~~~~~s~dg~~la~~~ 402 (416)
T 2pm9_A 381 WYGEPSPAAHWAFGGKLVQITP 402 (416)
T ss_dssp TTCCCSCCCEEETTTEEECBCT
T ss_pred cccCCccceEEeeCCeEEEEeC
Confidence 3677888999999999999864
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-28 Score=210.00 Aligned_cols=224 Identities=11% Similarity=0.057 Sum_probs=162.3
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCc
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGK 95 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~ 95 (318)
+.+.+++|+.|++|++||+.+++.+..+.. .+|.++.+++. +++++.|++
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~---------------------------~~v~~~~~~~~---~~s~s~D~~ 96 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKDSKTITTITT---------------------------PNPRTGGEHPA---IISRGPCNR 96 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESSSSCEEEEEE---------------------------ECCCTTCCCCS---EEEECSTTE
T ss_pred CCCEEEEECCCCcEEEEECCCCcEEEEEec---------------------------CCceeeeeCCc---eEEecCCCe
Confidence 456689999999999999998876544431 22334444444 899999999
Q ss_pred EEEEEccCCccccccccccCCceeEEeee-ccccccEEEEEeeeecCCCCC--CCcEEEEEeCCCcEEEEECCCcceeee
Q 021036 96 VSLWRICVPKCYSVEDCKVPTTAVLIGLF-QAHNSWITSISLAVLSSDSSN--PQVLLVTGSSDGSVRIWDGYIQELQKS 172 (318)
Q Consensus 96 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~~~--~~~~l~s~~~d~~v~iwd~~~~~~~~~ 172 (318)
|++|+....... ......+.++.+ .+|.++|.+++| ++ ++++|++++.||+|++||+++++....
T Consensus 97 i~~w~~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~ 164 (343)
T 3lrv_A 97 LLLLYPGNQITI-----LDSKTNKVLREIEVDSANEIIYMYG-------HNEVNTEYFIWADNRGTIGFQSYEDDSQYIV 164 (343)
T ss_dssp EEEEETTTEEEE-----EETTTCCEEEEEECCCSSCEEEEEC-------CC---CCEEEEEETTCCEEEEESSSSCEEEE
T ss_pred EEEEEccCceEE-----eecCCcceeEEeecCCCCCEEEEEc-------CCCCCCCEEEEEeCCCcEEEEECCCCcEEEE
Confidence 999987642100 000002223333 367789999999 78 899999999999999999998887554
Q ss_pred ecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEe-eeeec-ccCceeEEEE
Q 021036 173 AEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKV-GSYNA-HDQVVTGLAW 250 (318)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~-~~~~~-h~~~v~~~~~ 250 (318)
...+ +...+.+++|+ |++.+|++|+.||.|++| |.++++ .+ ..+.. |...|++++|
T Consensus 165 ~~~~-------------~~~~i~~~~~~-----pdg~~lasg~~dg~i~iw--d~~~~~--~~~~~~~~~h~~~v~~l~f 222 (343)
T 3lrv_A 165 HSAK-------------SDVEYSSGVLH-----KDSLLLALYSPDGILDVY--NLSSPD--QASSRFPVDEEAKIKEVKF 222 (343)
T ss_dssp ECCC-------------SSCCCCEEEEC-----TTSCEEEEECTTSCEEEE--ESSCTT--SCCEECCCCTTSCEEEEEE
T ss_pred EecC-------------CCCceEEEEEC-----CCCCEEEEEcCCCEEEEE--ECCCCC--CCccEEeccCCCCEEEEEE
Confidence 4322 23468999999 999999999999999999 555555 33 56677 9999999999
Q ss_pred cCCCCEEEEecCCCcEEEEEecCCceee-eecCCCCCCccccccCCCcceee--eEEEEcCCCcEEEEE
Q 021036 251 AFDGCCLYSCSQDNFVRSWIFHGNSLSQ-VSIPTNTPGLQSCTDLPDAFVSC--LGMAVSPGNLVVAMV 316 (318)
Q Consensus 251 ~~~~~~l~s~~~d~~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~v--~~v~~sp~~~~l~~~ 316 (318)
+|++.+|++++ |+.|++||+++..... +... ..|...+ .+++|+|+|++|+++
T Consensus 223 s~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~g~~l~~~ 278 (343)
T 3lrv_A 223 ADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTY------------TIPEFKTGTVTYDIDDSGKNMIAY 278 (343)
T ss_dssp CTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCC------------BC-----CCEEEEECTTSSEEEEE
T ss_pred eCCCCEEEEEe-CCeEEEEEcCCCCcceeeccc------------ccccccccceEEEECCCCCEEEEe
Confidence 99999999999 4599999998865432 1110 0122233 469999999999985
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-28 Score=210.86 Aligned_cols=214 Identities=17% Similarity=0.212 Sum_probs=170.9
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEE
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVS 97 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~ 97 (318)
..+++++.|+.+++||+.+++....+... +... +.+++|+|++ ++|++|+.||.|+
T Consensus 104 ~~l~~~~~d~~v~lw~~~~~~~~~~~~~~---~~~~---v~~v~~s~~~------------------~~l~~~~~dg~i~ 159 (401)
T 4aez_A 104 LNVVAVALERNVYVWNADSGSVSALAETD---ESTY---VASVKWSHDG------------------SFLSVGLGNGLVD 159 (401)
T ss_dssp TSEEEEEETTEEEEEETTTCCEEEEEECC---TTCC---EEEEEECTTS------------------SEEEEEETTSCEE
T ss_pred CCEEEEECCCeEEEeeCCCCcEeEeeecC---CCCC---EEEEEECCCC------------------CEEEEECCCCeEE
Confidence 45889999999999999988765444321 2332 4457777766 9999999999999
Q ss_pred EEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCC-cceeeeeccc
Q 021036 98 LWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYI-QELQKSAEAH 176 (318)
Q Consensus 98 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~ 176 (318)
+||+.++ +.+..+.+|...|.+++| . +++|++++.||.|++||++. +.....+.
T Consensus 160 iwd~~~~--------------~~~~~~~~~~~~v~~~~~-------~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-- 214 (401)
T 4aez_A 160 IYDVESQ--------------TKLRTMAGHQARVGCLSW-------N--RHVLSSGSRSGAIHHHDVRIANHQIGTLQ-- 214 (401)
T ss_dssp EEETTTC--------------CEEEEECCCSSCEEEEEE-------E--TTEEEEEETTSEEEEEETTSSSCEEEEEE--
T ss_pred EEECcCC--------------eEEEEecCCCCceEEEEE-------C--CCEEEEEcCCCCEEEEecccCcceeeEEc--
Confidence 9999884 456778899999999999 3 46899999999999999984 44444443
Q ss_pred ccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCC-
Q 021036 177 CVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGC- 255 (318)
Q Consensus 177 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~- 255 (318)
.|...|.+++|+ |++.+|++|+.||.|++| |.++.+ ++..+..|...|.+++|+|++.
T Consensus 215 ------------~~~~~v~~~~~~-----~~~~~l~s~~~d~~v~iw--d~~~~~--~~~~~~~~~~~v~~~~~~p~~~~ 273 (401)
T 4aez_A 215 ------------GHSSEVCGLAWR-----SDGLQLASGGNDNVVQIW--DARSSI--PKFTKTNHNAAVKAVAWCPWQSN 273 (401)
T ss_dssp ------------CCSSCEEEEEEC-----TTSSEEEEEETTSCEEEE--ETTCSS--EEEEECCCSSCCCEEEECTTSTT
T ss_pred ------------CCCCCeeEEEEc-----CCCCEEEEEeCCCeEEEc--cCCCCC--ccEEecCCcceEEEEEECCCCCC
Confidence 345589999999 999999999999999999 555555 6667788999999999999765
Q ss_pred EEEEec--CCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 256 CLYSCS--QDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 256 ~l~s~~--~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
++++++ .|+.|++||+.++.......+. ..|.+++|+|++++|+++
T Consensus 274 ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~---------------~~v~~~~~s~~~~~l~~~ 321 (401)
T 4aez_A 274 LLATGGGTMDKQIHFWNAATGARVNTVDAG---------------SQVTSLIWSPHSKEIMST 321 (401)
T ss_dssp EEEEECCTTTCEEEEEETTTCCEEEEEECS---------------SCEEEEEECSSSSEEEEE
T ss_pred EEEEecCCCCCEEEEEECCCCCEEEEEeCC---------------CcEEEEEECCCCCeEEEE
Confidence 666654 7999999999887655433222 378999999999999884
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-28 Score=230.29 Aligned_cols=234 Identities=18% Similarity=0.170 Sum_probs=179.0
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCC--ccEEEEecCC
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNW--FSILAVGGRS 93 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~--~~~l~~g~~d 93 (318)
+...+++|+.||+|++||+..+...... .+.+|..+|.+++++++ +++|++|+.|
T Consensus 20 dg~~latg~~dg~I~vwd~~~~~~~~~~-----------------------~l~~h~~~V~~l~~s~~~~~~~l~s~s~D 76 (753)
T 3jro_A 20 YGKRLATCSSDKTIKIFEVEGETHKLID-----------------------TLTGHEGPVWRVDWAHPKFGTILASCSYD 76 (753)
T ss_dssp SSCCEEEEETTTEEEEEEEETTEEEEEE-----------------------EECCCSSCEEEEEECCTTSCSEEEEEETT
T ss_pred CCCeEEEEECCCcEEEEecCCCCCccce-----------------------eccCCcCceEEEEecCCCCCCEEEEEeCC
Confidence 3457899999999999998743221111 12234444444444444 5999999999
Q ss_pred CcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCC--CcEEEEEeCCCcEEEEECCCcceee
Q 021036 94 GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNP--QVLLVTGSSDGSVRIWDGYIQELQK 171 (318)
Q Consensus 94 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~--~~~l~s~~~d~~v~iwd~~~~~~~~ 171 (318)
|.|++||+.+++ ...+..+.+|...|++++| +++ +++|++|+.||.|++||++++....
T Consensus 77 g~I~vwd~~~~~------------~~~~~~~~~h~~~V~~v~~-------sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~ 137 (753)
T 3jro_A 77 GKVLIWKEENGR------------WSQIAVHAVHSASVNSVQW-------APHEYGPLLLVASSDGKVSVVEFKENGTTS 137 (753)
T ss_dssp SCEEEEEEETTE------------EEEEEEECCCSSCEEEEEE-------CCGGGCSEEEEEETTSEEEEEECCSSSCCC
T ss_pred CeEEEEECCCCc------------ccccccccCCCCCeEEEEE-------CCCCCCCEEEEEeCCCcEEEEEeecCCCcc
Confidence 999999999864 2366778889999999999 787 8999999999999999998774332
Q ss_pred eecccccccccceeeeeecccceeEEEEeeccCCC-------------CceEEEEEeCCCcEEEeeeccCCCeeeEeeee
Q 021036 172 SAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSP-------------RLMLLAVGKGSGSFDLWKCDISCNKFDKVGSY 238 (318)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~-------------~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 238 (318)
... ...|...|.+++|+ | ++.++++|+.||.|++||+............+
T Consensus 138 ~~~------------~~~~~~~v~~l~~~-----p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~ 200 (753)
T 3jro_A 138 PII------------IDAHAIGVNSASWA-----PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL 200 (753)
T ss_dssp CEE------------EECCSSCEEEEEEC-----CCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEE
T ss_pred eeE------------eecCCCceEEEEec-----CcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeee
Confidence 211 13455689999999 6 58999999999999999766554444567788
Q ss_pred ecccCceeEEEEcCC---CCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 239 NAHDQVVTGLAWAFD---GCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 239 ~~h~~~v~~~~~~~~---~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
.+|...|++++|+|+ +.+|++++.||.|++||+.++....... ......|...|++++|+|+|++|++
T Consensus 201 ~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~---------~~~~~~~~~~v~~l~~spdg~~l~s 271 (753)
T 3jro_A 201 EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKT---------LLKEEKFPDVLWRASWSLSGNVLAL 271 (753)
T ss_dssp CCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCC---------BSSSSCCSSCCCCEEECTTTCCEEE
T ss_pred cCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeE---------EeccCCCCCceEEEEEcCCCCEEEE
Confidence 899999999999999 8999999999999999998753211100 0122346678999999999999998
Q ss_pred Ee
Q 021036 316 VQ 317 (318)
Q Consensus 316 ~~ 317 (318)
|.
T Consensus 272 ~s 273 (753)
T 3jro_A 272 SG 273 (753)
T ss_dssp EC
T ss_pred Ec
Confidence 74
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-28 Score=205.53 Aligned_cols=234 Identities=18% Similarity=0.222 Sum_probs=171.4
Q ss_pred eEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEEE
Q 021036 20 TVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLW 99 (318)
Q Consensus 20 ~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw 99 (318)
+++.+.|++|++||+.++++++.+.... |... +.+++|+|++ ++|++|+.||.|++|
T Consensus 38 ~lAvg~D~tV~iWd~~tg~~~~~~~~~~--~~~~---V~~v~~~~~~------------------~~l~sgs~Dg~v~iw 94 (318)
T 4ggc_A 38 VLAVALDNSVYLWSASSGDILQLLQMEQ--PGEY---ISSVAWIKEG------------------NYLAVGTSSAEVQLW 94 (318)
T ss_dssp EEEEEETTEEEEEETTTCCEEEEEECCS--TTCC---EEEEEECTTS------------------SEEEEEETTSEEEEE
T ss_pred EEEEEeCCEEEEEECCCCCEEEEEEecC--CCCe---EEEEEECCCC------------------CEEEEEECCCcEEEe
Confidence 5666679999999999998876664322 3332 4446777666 999999999999999
Q ss_pred EccCCcccccccc---------------------------ccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEE
Q 021036 100 RICVPKCYSVEDC---------------------------KVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVT 152 (318)
Q Consensus 100 ~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s 152 (318)
++++++++..... ........+..+.+|...+..+.+ .+++++|++
T Consensus 95 ~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~s 167 (318)
T 4ggc_A 95 DVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRW-------APDGRHLAS 167 (318)
T ss_dssp ETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEE-------CTTSSEEEE
T ss_pred ecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEE-------cCCCCEEEE
Confidence 9998875432110 011123445567789999999999 899999999
Q ss_pred EeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCc-eE--EEEEeCCCcEEEeeeccCC
Q 021036 153 GSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRL-ML--LAVGKGSGSFDLWKCDISC 229 (318)
Q Consensus 153 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~-~~--l~~~~~dg~i~vw~~~~~~ 229 (318)
++.|++|++||+++++....... ....+...|..+.+. |++ .. +++++.++.|++|+ .+.
T Consensus 168 ~~~d~~i~iwd~~~~~~~~~~~~----------~~~~~~~~v~~~~~~-----~~~~~~~~~~~~~~~~~i~lwd--~~~ 230 (318)
T 4ggc_A 168 GGNDNLVNVWPSAPGEGGWVPLQ----------TFTQHQGAVKAVAWC-----PWQSNVLATGGGTSDRHIRIWN--VCS 230 (318)
T ss_dssp EETTSCEEEEESSCBTTBSCCSE----------EECCCCSCEEEEEEC-----TTSTTEEEEEECTTTCEEEEEE--TTT
T ss_pred EecCcceeEEECCCCccccccee----------eecccCCceEEEEec-----CCCCcEEEEEecCCCCEEEEEe--ccc
Confidence 99999999999998764332211 112345578888888 554 33 35677899999994 445
Q ss_pred CeeeEeeeeecccCceeEEEEcCCCCEEEEe--cCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEc
Q 021036 230 NKFDKVGSYNAHDQVVTGLAWAFDGCCLYSC--SQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVS 307 (318)
Q Consensus 230 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s 307 (318)
.. .. ....+...+..+.|+|++..++++ +.|+.|++||+++++... .+.+|.+.|++++|+
T Consensus 231 ~~--~~-~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~--------------~l~gH~~~V~~l~~s 293 (318)
T 4ggc_A 231 GA--CL-SAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVA--------------ELKGHTSRVLSLTMS 293 (318)
T ss_dssp CC--EE-EEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEE--------------EECCCSSCEEEEEEC
T ss_pred cc--cc-ccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEE--------------EEcCCCCCEEEEEEc
Confidence 44 22 234577789999999998877654 489999999998876553 334577899999999
Q ss_pred CCCcEEEEEe
Q 021036 308 PGNLVVAMVQ 317 (318)
Q Consensus 308 p~~~~l~~~~ 317 (318)
|||++||+|.
T Consensus 294 pdg~~l~S~s 303 (318)
T 4ggc_A 294 PDGATVASAA 303 (318)
T ss_dssp TTSSCEEEEE
T ss_pred CCCCEEEEEe
Confidence 9999999974
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-29 Score=221.84 Aligned_cols=196 Identities=15% Similarity=0.098 Sum_probs=155.2
Q ss_pred CCcccccccCCCC-CccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCC-CC
Q 021036 70 SKKYPVPQNGSSN-WFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSN-PQ 147 (318)
Q Consensus 70 ~~~~~v~~~~~s~-~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~-~~ 147 (318)
.|...|++++|+| ++++||+|+.||.|+|||+.+++ ......+.+|.+.|++|+| +| ++
T Consensus 117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~------------~~~~~~~~gH~~~V~~l~f-------~p~~~ 177 (435)
T 4e54_B 117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD------------KPTFIKGIGAGGSITGLKF-------NPLNT 177 (435)
T ss_dssp ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCS------------CCEEECCCSSSCCCCEEEE-------CSSCT
T ss_pred CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCC------------ceeEEEccCCCCCEEEEEE-------eCCCC
Confidence 3556688888887 46899999999999999998765 2344566789999999999 65 68
Q ss_pred cEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeecc
Q 021036 148 VLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDI 227 (318)
Q Consensus 148 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 227 (318)
++|++|+.||+|++||++++........+. +...+.+++|+ |++.+|++|+.||.|++|| .
T Consensus 178 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~------------~~~~~~~~~~~-----~~~~~l~~g~~dg~i~~wd--~ 238 (435)
T 4e54_B 178 NQFYASSMEGTTRLQDFKGNILRVFASSDT------------INIWFCSLDVS-----ASSRMVVTGDNVGNVILLN--M 238 (435)
T ss_dssp TEEEEECSSSCEEEEETTSCEEEEEECCSS------------CSCCCCCEEEE-----TTTTEEEEECSSSBEEEEE--S
T ss_pred CEEEEEeCCCEEEEeeccCCceeEEeccCC------------CCccEEEEEEC-----CCCCEEEEEeCCCcEeeec--c
Confidence 899999999999999998654332222211 23367889999 9999999999999999995 4
Q ss_pred CCCeeeEeeeeecccCceeEEEEcCCCC-EEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEE
Q 021036 228 SCNKFDKVGSYNAHDQVVTGLAWAFDGC-CLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAV 306 (318)
Q Consensus 228 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 306 (318)
+.. .+..+.+|...|++++|+|++. +|++++.|++|++||++........ ....+|...|++++|
T Consensus 239 ~~~---~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~-----------~~~~~h~~~v~~~~~ 304 (435)
T 4e54_B 239 DGK---ELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASF-----------LYSLPHRHPVNAACF 304 (435)
T ss_dssp SSC---BCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCC-----------SBCCBCSSCEEECCB
T ss_pred Ccc---eeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceE-----------EEeeeccccccceeE
Confidence 433 4667889999999999999876 7889999999999999875432211 122347789999999
Q ss_pred cCCCcEEEEEe
Q 021036 307 SPGNLVVAMVQ 317 (318)
Q Consensus 307 sp~~~~l~~~~ 317 (318)
+|+|++|+++.
T Consensus 305 spdg~~l~s~~ 315 (435)
T 4e54_B 305 SPDGARLLTTD 315 (435)
T ss_dssp CTTSSEEEEEE
T ss_pred CCCCCeeEEEc
Confidence 99999999874
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-28 Score=205.25 Aligned_cols=229 Identities=15% Similarity=0.219 Sum_probs=174.8
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeeccccc---------------------------C
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLR---------------------------L 68 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~---------------------------~ 68 (318)
+...+++++.|+.+++||+.+++....+.. +... +.+++|+|++. +
T Consensus 28 ~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~----~~~~---v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~ 100 (313)
T 3odt_A 28 DDSKVASVSRDGTVRLWSKDDQWLGTVVYT----GQGF---LNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTL 100 (313)
T ss_dssp ETTEEEEEETTSEEEEEEESSSEEEEEEEE----CSSC---EEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEE
T ss_pred CCCEEEEEEcCCcEEEEECCCCEEEEEeec----CCcc---EEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccch
Confidence 345689999999999999988765444432 2222 33355555432 3
Q ss_pred CCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCC-CC
Q 021036 69 SSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSN-PQ 147 (318)
Q Consensus 69 ~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~-~~ 147 (318)
..|..+|.++.+ ++++|++++.||.|++|| . .+....+..|...|.++.| .+ ++
T Consensus 101 ~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~--------------~~~~~~~~~~~~~v~~~~~-------~~~~~ 155 (313)
T 3odt_A 101 IGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--E--------------GSLVYNLQAHNASVWDAKV-------VSFSE 155 (313)
T ss_dssp CCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--T--------------TEEEEEEECCSSCEEEEEE-------EETTT
T ss_pred hhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--C--------------CcEEEecccCCCceeEEEE-------ccCCC
Confidence 356677777777 567888888889999998 2 3466778889999999999 44 78
Q ss_pred cEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeecc
Q 021036 148 VLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDI 227 (318)
Q Consensus 148 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 227 (318)
++|++++.|+.|++||.. +....+.. .+...+.+++|+ |++. +++++.||.|++| +.
T Consensus 156 ~~l~~~~~d~~i~i~d~~--~~~~~~~~-------------~~~~~i~~~~~~-----~~~~-~~~~~~dg~i~i~--d~ 212 (313)
T 3odt_A 156 NKFLTASADKTIKLWQND--KVIKTFSG-------------IHNDVVRHLAVV-----DDGH-FISCSNDGLIKLV--DM 212 (313)
T ss_dssp TEEEEEETTSCEEEEETT--EEEEEECS-------------SCSSCEEEEEEE-----ETTE-EEEEETTSEEEEE--ET
T ss_pred CEEEEEECCCCEEEEecC--ceEEEEec-------------cCcccEEEEEEc-----CCCe-EEEccCCCeEEEE--EC
Confidence 899999999999999943 33333332 144589999999 8888 9999999999999 55
Q ss_pred CCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEc
Q 021036 228 SCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVS 307 (318)
Q Consensus 228 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s 307 (318)
++++ .+..+.+|...|++++|+|++ .|++++.||.|++||+.++....... .|...|.+++|+
T Consensus 213 ~~~~--~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~--------------~~~~~i~~~~~~ 275 (313)
T 3odt_A 213 HTGD--VLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVIT--------------LPAISIWSVDCM 275 (313)
T ss_dssp TTCC--EEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEE--------------CSSSCEEEEEEC
T ss_pred Cchh--hhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEe--------------ccCceEEEEEEc
Confidence 5665 677888999999999999999 58999999999999998876543221 233589999999
Q ss_pred CCCcEEEEE
Q 021036 308 PGNLVVAMV 316 (318)
Q Consensus 308 p~~~~l~~~ 316 (318)
|++++++.+
T Consensus 276 ~~~~~~~~~ 284 (313)
T 3odt_A 276 SNGDIIVGS 284 (313)
T ss_dssp TTSCEEEEE
T ss_pred cCCCEEEEe
Confidence 999976643
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-28 Score=229.79 Aligned_cols=238 Identities=12% Similarity=0.117 Sum_probs=191.1
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeeccccc------------------------CCCC
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLR------------------------LSSK 71 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~------------------------~~~~ 71 (318)
+...+++++.|+.|++||+.+++.+..+.. |... +.+++|+|++. +..|
T Consensus 24 ~~~~la~~~~~g~v~iwd~~~~~~~~~~~~----~~~~---v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 96 (814)
T 3mkq_A 24 TEPWVLTTLYSGRVEIWNYETQVEVRSIQV----TETP---VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH 96 (814)
T ss_dssp SSSEEEEEETTSEEEEEETTTTEEEEEEEC----CSSC---EEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred CCCEEEEEeCCCEEEEEECCCCceEEEEec----CCCc---EEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecC
Confidence 445688999999999999999876665543 3333 44466666553 3468
Q ss_pred cccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCC-CCcEE
Q 021036 72 KYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSN-PQVLL 150 (318)
Q Consensus 72 ~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~-~~~~l 150 (318)
...|.++++++++++|++++.||.|++|++.++. .....+.+|...|.+++| ++ ++..|
T Consensus 97 ~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~-------------~~~~~~~~~~~~v~~~~~-------~p~~~~~l 156 (814)
T 3mkq_A 97 PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW-------------ALEQTFEGHEHFVMCVAF-------NPKDPSTF 156 (814)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS-------------EEEEEEECCSSCEEEEEE-------ETTEEEEE
T ss_pred CCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc-------------eEEEEEcCCCCcEEEEEE-------EcCCCCEE
Confidence 8899999999999999999999999999998752 455678899999999999 77 78899
Q ss_pred EEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCC--CceEEEEEeCCCcEEEeeeccC
Q 021036 151 VTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSP--RLMLLAVGKGSGSFDLWKCDIS 228 (318)
Q Consensus 151 ~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~--~~~~l~~~~~dg~i~vw~~~~~ 228 (318)
++++.||.|++||+.+++....+..+ +...+..++|+ | ++.++++++.||.|++| +.+
T Consensus 157 ~~~~~dg~v~vwd~~~~~~~~~~~~~-------------~~~~v~~~~~~-----~~~~~~~l~~~~~dg~i~~~--d~~ 216 (814)
T 3mkq_A 157 ASGCLDRTVKVWSLGQSTPNFTLTTG-------------QERGVNYVDYY-----PLPDKPYMITASDDLTIKIW--DYQ 216 (814)
T ss_dssp EEEETTSEEEEEETTCSSCSEEEECC-------------CTTCCCEEEEC-----CSTTCCEEEEECTTSEEEEE--ETT
T ss_pred EEEeCCCeEEEEECCCCcceeEEecC-------------CCCCEEEEEEE-----ECCCCCEEEEEeCCCEEEEE--ECC
Confidence 99999999999999887665554432 23478999998 7 89999999999999999 556
Q ss_pred CCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcC
Q 021036 229 CNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSP 308 (318)
Q Consensus 229 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp 308 (318)
+++ .+..+.+|...|.+++|+|++.+|++++.||.|++||+.++...... ..|...+.+++|+|
T Consensus 217 ~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~--------------~~~~~~v~~~~~~~ 280 (814)
T 3mkq_A 217 TKS--CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL--------------NVGLERSWCIATHP 280 (814)
T ss_dssp TTE--EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEE--------------CCSSSSEEEEEECT
T ss_pred CCc--EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe--------------ecCCCcEEEEEEcc
Confidence 665 67778889999999999999999999999999999999886554322 11334778888888
Q ss_pred CCc--EEEEE
Q 021036 309 GNL--VVAMV 316 (318)
Q Consensus 309 ~~~--~l~~~ 316 (318)
+++ +++++
T Consensus 281 ~~~~~~~~~~ 290 (814)
T 3mkq_A 281 TGRKNYIASG 290 (814)
T ss_dssp TCGGGEEEEE
T ss_pred CCCceEEEEE
Confidence 876 45554
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-28 Score=212.41 Aligned_cols=254 Identities=16% Similarity=0.199 Sum_probs=174.2
Q ss_pred CCCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCcc-EEEEe
Q 021036 12 MKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFS-ILAVG 90 (318)
Q Consensus 12 ~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~-~l~~g 90 (318)
+.+.+...+++++.|+.|++||+.+........ -...+...+..|..+|.++++++++. +|++|
T Consensus 136 ~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~---------------~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 200 (430)
T 2xyi_A 136 YMPQNACVIATKTPSSDVLVFDYTKHPSKPEPS---------------GECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA 200 (430)
T ss_dssp EETTEEEEEEEECSSSCEEEEEGGGSCSSCCTT---------------CCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred ECCCCCcEEEEECCCCcEEEEECCCcccccCcc---------------ccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence 333345678999999999999997632111100 00001112223444445555555446 99999
Q ss_pred cCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCC-CCcEEEEEeCCCcEEEEECCCcc-
Q 021036 91 GRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSN-PQVLLVTGSSDGSVRIWDGYIQE- 168 (318)
Q Consensus 91 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~- 168 (318)
+.||.|++|++..+.... ........+.+|...|.+++| ++ ++.+|++++.|+.|++||++++.
T Consensus 201 ~~dg~i~vwd~~~~~~~~-------~~~~~~~~~~~h~~~v~~v~~-------~p~~~~~l~s~~~dg~i~i~d~~~~~~ 266 (430)
T 2xyi_A 201 SDDHTICLWDINATPKEH-------RVIDAKNIFTGHTAVVEDVAW-------HLLHESLFGSVADDQKLMIWDTRNNNT 266 (430)
T ss_dssp CTTSCEEEEETTSCCBGG-------GEEECSEEECCCSSCEEEEEE-------CSSCTTEEEEEETTSEEEEEETTCSCS
T ss_pred eCCCeEEEEeCCCCCCCC-------ceeccceeecCCCCCEeeeEE-------eCCCCCEEEEEeCCCeEEEEECCCCCC
Confidence 999999999998743210 001224567789999999999 66 67899999999999999999763
Q ss_pred --eeeeecccccccccceeeeeecccceeEEEEeeccCCCCce-EEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCce
Q 021036 169 --LQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLM-LLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVV 245 (318)
Q Consensus 169 --~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v 245 (318)
....+. .|...|++++|+ |++. +|++|+.||.|++|| .+... .++..+.+|...|
T Consensus 267 ~~~~~~~~--------------~~~~~v~~i~~~-----p~~~~~l~tg~~dg~v~vwd--~~~~~-~~~~~~~~h~~~v 324 (430)
T 2xyi_A 267 SKPSHTVD--------------AHTAEVNCLSFN-----PYSEFILATGSADKTVALWD--LRNLK-LKLHSFESHKDEI 324 (430)
T ss_dssp SSCSEEEE--------------CCSSCEEEEEEC-----SSCTTEEEEEETTSEEEEEE--TTCTT-SCSEEEECCSSCE
T ss_pred CcceeEee--------------cCCCCeEEEEeC-----CCCCCEEEEEeCCCeEEEEe--CCCCC-CCeEEeecCCCCE
Confidence 333332 355689999999 8776 799999999999995 44422 1567788899999
Q ss_pred eEEEEcCCCC-EEEEecCCCcEEEEEecCCceeeeecC-CCCCCccccccCCCcceeeeEEEEcCCCc-EEEEEe
Q 021036 246 TGLAWAFDGC-CLYSCSQDNFVRSWIFHGNSLSQVSIP-TNTPGLQSCTDLPDAFVSCLGMAVSPGNL-VVAMVQ 317 (318)
Q Consensus 246 ~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~l~~~~ 317 (318)
++++|+|+++ +|++++.|+.|++||+........... ...+ ......+.+|...|++++|+|+++ +|+++.
T Consensus 325 ~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s 398 (430)
T 2xyi_A 325 FQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP-PELLFIHGGHTAKISDFSWNPNEPWIICSVS 398 (430)
T ss_dssp EEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCC-TTEEEECCCCSSCEEEEEECSSSTTEEEEEE
T ss_pred EEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCC-cceEEEcCCCCCCceEEEECCCCCCEEEEEE
Confidence 9999999985 799999999999999986321100000 0000 000123345778999999999998 787764
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.4e-28 Score=213.16 Aligned_cols=245 Identities=12% Similarity=0.118 Sum_probs=188.2
Q ss_pred ccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeeccccc-----------------------CCCCcc
Q 021036 17 THPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLR-----------------------LSSKKY 73 (318)
Q Consensus 17 ~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~-----------------------~~~~~~ 73 (318)
...+++|+.|++|++||+.+++.+..+.. |... +.+++|+|++. +.+|..
T Consensus 132 ~~~l~sgs~dg~i~vwd~~~~~~~~~~~~----h~~~---V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~ 204 (464)
T 3v7d_B 132 DNYVITGADDKMIRVYDSINKKFLLQLSG----HDGG---VWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNS 204 (464)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEEEECC----CSSC---EEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEEEeC----CCcC---EEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECCCCC
Confidence 35689999999999999999876555542 3333 23344444321 456888
Q ss_pred cccccCCC--CCccEEEEecCCCcEEEEEccCCcccccccc---------ccCCceeEEeeeccccccEEEEEeeeecCC
Q 021036 74 PVPQNGSS--NWFSILAVGGRSGKVSLWRICVPKCYSVEDC---------KVPTTAVLIGLFQAHNSWITSISLAVLSSD 142 (318)
Q Consensus 74 ~v~~~~~s--~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~---------~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 142 (318)
+|.+++++ +++++|++|+.||.|++||+.++........ .+......+..+.+|...|.++..
T Consensus 205 ~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------ 278 (464)
T 3v7d_B 205 TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG------ 278 (464)
T ss_dssp CEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEE------
T ss_pred ccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcC------
Confidence 99999988 5789999999999999999987653321100 011111235677889999998855
Q ss_pred CCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEE
Q 021036 143 SSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDL 222 (318)
Q Consensus 143 ~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~v 222 (318)
++++|++++.|+.|++||+++++.+..+..+. ..|.+++|+ |+++.+++|+.||.|++
T Consensus 279 ---~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~--------------~~v~~~~~~-----~~~~~l~sg~~dg~i~v 336 (464)
T 3v7d_B 279 ---HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT--------------DRIYSTIYD-----HERKRCISASMDTTIRI 336 (464)
T ss_dssp ---ETTEEEEEETTSCEEEEETTTTEEEEEECCCS--------------SCEEEEEEE-----TTTTEEEEEETTSCEEE
T ss_pred ---CCCEEEEEeCCCeEEEEECCCCcEEEEecCCC--------------CCEEEEEEc-----CCCCEEEEEeCCCcEEE
Confidence 57799999999999999999988877766544 489999999 99999999999999999
Q ss_pred eeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeee
Q 021036 223 WKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCL 302 (318)
Q Consensus 223 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 302 (318)
| +.++++ .+..+.+|...|.+++|+ +.+|++++.||.|++||+.+........+. ..+.
T Consensus 337 w--d~~~~~--~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~---------------~~~~ 395 (464)
T 3v7d_B 337 W--DLENGE--LMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHT---------------NLSA 395 (464)
T ss_dssp E--ETTTTE--EEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECT---------------TCCC
T ss_pred E--ECCCCc--EEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCC---------------CCcc
Confidence 9 566666 777889999999999998 579999999999999999886544332222 2567
Q ss_pred EEEEcCCCcEEEEEe
Q 021036 303 GMAVSPGNLVVAMVQ 317 (318)
Q Consensus 303 ~v~~sp~~~~l~~~~ 317 (318)
.++|+|++++|++|.
T Consensus 396 ~~~~~~~~~~l~~~~ 410 (464)
T 3v7d_B 396 ITTFYVSDNILVSGS 410 (464)
T ss_dssp EEEEEECSSEEEEEE
T ss_pred EEEEEeCCCEEEEec
Confidence 889999999999874
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=210.65 Aligned_cols=200 Identities=18% Similarity=0.208 Sum_probs=160.7
Q ss_pred CCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCC-
Q 021036 68 LSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNP- 146 (318)
Q Consensus 68 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~- 146 (318)
+.+|..+|+++++++++++|++|+.||.|++|++..+. .+.+..+.+|...|++++| +++
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~------------~~~~~~~~~h~~~v~~~~~-------~~~~ 67 (379)
T 3jrp_A 7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET------------HKLIDTLTGHEGPVWRVDW-------AHPK 67 (379)
T ss_dssp EEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE------------EEEEEEECCCSSCEEEEEE-------CCGG
T ss_pred ecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc------------ceeeeEecCCCCcEEEEEe-------CCCC
Confidence 34577777777777777999999999999999998543 5677788999999999999 665
Q ss_pred -CcEEEEEeCCCcEEEEECCCcc--eeeeecccccccccceeeeeecccceeEEEEeeccCCCC--ceEEEEEeCCCcEE
Q 021036 147 -QVLLVTGSSDGSVRIWDGYIQE--LQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPR--LMLLAVGKGSGSFD 221 (318)
Q Consensus 147 -~~~l~s~~~d~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~--~~~l~~~~~dg~i~ 221 (318)
+++|++++.||.|++||+.+++ ....+.. |...|.+++|+ |+ +.+|++++.|+.|+
T Consensus 68 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~--------------~~~~v~~~~~~-----~~~~~~~l~~~~~d~~i~ 128 (379)
T 3jrp_A 68 FGTILASCSYDGKVLIWKEENGRWSQIAVHAV--------------HSASVNSVQWA-----PHEYGPLLLVASSDGKVS 128 (379)
T ss_dssp GCSEEEEEETTSCEEEEEEETTEEEEEEEECC--------------CSSCEEEEEEC-----CGGGCSEEEEEETTSEEE
T ss_pred CCCEEEEeccCCEEEEEEcCCCceeEeeeecC--------------CCcceEEEEeC-----CCCCCCEEEEecCCCcEE
Confidence 8999999999999999999876 3333332 44589999999 88 89999999999999
Q ss_pred EeeeccCCCeeeEeeeeecccCceeEEEEcC-------------CCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCc
Q 021036 222 LWKCDISCNKFDKVGSYNAHDQVVTGLAWAF-------------DGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGL 288 (318)
Q Consensus 222 vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-------------~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~ 288 (318)
+|++. .........+.+|...|.+++|+| ++.+|++++.|+.|++||++++.......
T Consensus 129 v~d~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------- 199 (379)
T 3jrp_A 129 VVEFK--ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE------- 199 (379)
T ss_dssp EEECC--TTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEE-------
T ss_pred EEecC--CCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeE-------
Confidence 99554 432224456778999999999999 68999999999999999998754321110
Q ss_pred cccccCCCcceeeeEEEEcCC---CcEEEEEe
Q 021036 289 QSCTDLPDAFVSCLGMAVSPG---NLVVAMVQ 317 (318)
Q Consensus 289 ~~~~~~~~h~~~v~~v~~sp~---~~~l~~~~ 317 (318)
..+.+|...|.+++|+|+ +.+|+++.
T Consensus 200 ---~~~~~h~~~v~~~~~sp~~~~~~~l~s~~ 228 (379)
T 3jrp_A 200 ---STLEGHSDWVRDVAWSPTVLLRSYLASVS 228 (379)
T ss_dssp ---EEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred ---EEEecccCcEeEEEECCCCCCCCeEEEEe
Confidence 123346679999999999 89999874
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.96 E-value=9.6e-28 Score=203.06 Aligned_cols=209 Identities=13% Similarity=0.167 Sum_probs=162.2
Q ss_pred CCCCcccccccCCCCC-ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCC
Q 021036 68 LSSKKYPVPQNGSSNW-FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNP 146 (318)
Q Consensus 68 ~~~~~~~v~~~~~s~~-~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~ 146 (318)
+++|..+|++++++|+ +++|++|+.||+|+|||+.+++... ..+.+.+.+|...|.+++| +++
T Consensus 34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~---------~~~~~~l~~h~~~V~~~~~-------s~d 97 (340)
T 4aow_A 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNY---------GIPQRALRGHSHFVSDVVI-------SSD 97 (340)
T ss_dssp ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCS---------EEEEEEECCCSSCEEEEEE-------CTT
T ss_pred ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccc---------ceeeEEEeCCCCCEEEEEE-------CCC
Confidence 5667777777777775 6899999999999999998755321 4466788999999999999 899
Q ss_pred CcEEEEEeCCCcEEEEECCCcceeeeeccccccccc-----------------------------ceeeeeecccceeEE
Q 021036 147 QVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSL-----------------------------LKEVVTVNTVPISVL 197 (318)
Q Consensus 147 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~v~~l 197 (318)
+++|++++.|+.|++|+............+...... .......|...+..+
T Consensus 98 g~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~ 177 (340)
T 4aow_A 98 GQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCV 177 (340)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEE
T ss_pred CCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccce
Confidence 999999999999999999876554433221110000 001223566778888
Q ss_pred EEeeccCCCC--ceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCc
Q 021036 198 SLILPVQSPR--LMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNS 275 (318)
Q Consensus 198 ~~~~~~~~~~--~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 275 (318)
+|+ ++ ..++++++.|+.|++| +.++.+ .+..+.+|...|++++|+|++++|++++.|+.|++||+++..
T Consensus 178 ~~~-----~~~~~~~~~s~~~d~~i~i~--d~~~~~--~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~ 248 (340)
T 4aow_A 178 RFS-----PNSSNPIIVSCGWDKLVKVW--NLANCK--LKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK 248 (340)
T ss_dssp EEC-----SCSSSCEEEEEETTSCEEEE--ETTTTE--EEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE
T ss_pred EEc-----cCCCCcEEEEEcCCCEEEEE--ECCCCc--eeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCc
Confidence 887 44 4678999999999999 566666 677788999999999999999999999999999999999876
Q ss_pred eeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 276 LSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
........ ..|.+++|+|++.+++++
T Consensus 249 ~~~~~~~~---------------~~v~~~~~~~~~~~~~~~ 274 (340)
T 4aow_A 249 HLYTLDGG---------------DIINALCFSPNRYWLCAA 274 (340)
T ss_dssp EEEEEECS---------------SCEEEEEECSSSSEEEEE
T ss_pred eeeeecCC---------------ceEEeeecCCCCceeecc
Confidence 55433222 378999999999888765
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-28 Score=224.74 Aligned_cols=234 Identities=16% Similarity=0.238 Sum_probs=168.1
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCc
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGK 95 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~ 95 (318)
+...+++|+.|++|++||+.++++...+.. |... +.+++|+|++ ++|++|+.|++
T Consensus 441 ~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~----h~~~---v~~~~~s~~~------------------~~l~s~s~D~~ 495 (694)
T 3dm0_A 441 DGQFALSGSWDGELRLWDLAAGVSTRRFVG----HTKD---VLSVAFSLDN------------------RQIVSASRDRT 495 (694)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEEC----CSSC---EEEEEECTTS------------------SCEEEEETTSC
T ss_pred CCCEEEEEeCCCcEEEEECCCCcceeEEeC----CCCC---EEEEEEeCCC------------------CEEEEEeCCCE
Confidence 455689999999999999988765433322 3332 3335555555 99999999999
Q ss_pred EEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCC--cEEEEEeCCCcEEEEECCCcceeeee
Q 021036 96 VSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQ--VLLVTGSSDGSVRIWDGYIQELQKSA 173 (318)
Q Consensus 96 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~--~~l~s~~~d~~v~iwd~~~~~~~~~~ 173 (318)
|++||...... ........+|...|.+++| ++++ ..|++++.|++|++||+++++....+
T Consensus 496 i~iwd~~~~~~-----------~~~~~~~~~h~~~v~~~~~-------~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~ 557 (694)
T 3dm0_A 496 IKLWNTLGECK-----------YTISEGGEGHRDWVSCVRF-------SPNTLQPTIVSASWDKTVKVWNLSNCKLRSTL 557 (694)
T ss_dssp EEEECTTSCEE-----------EEECSSTTSCSSCEEEEEE-------CSCSSSCEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred EEEEECCCCcc-----------eeeccCCCCCCCcEEEEEE-------eCCCCcceEEEEeCCCeEEEEECCCCcEEEEE
Confidence 99999865321 1111223578999999999 6665 58999999999999999988877666
Q ss_pred cccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCC
Q 021036 174 EAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFD 253 (318)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 253 (318)
..| ...|++++|+ |++++|++|+.||.|++| |.++++ .+..+. +...|.+++|+|+
T Consensus 558 ~~h--------------~~~v~~v~~s-----pdg~~l~sg~~Dg~i~iw--d~~~~~--~~~~~~-~~~~v~~~~~sp~ 613 (694)
T 3dm0_A 558 AGH--------------TGYVSTVAVS-----PDGSLCASGGKDGVVLLW--DLAEGK--KLYSLE-ANSVIHALCFSPN 613 (694)
T ss_dssp CCC--------------SSCEEEEEEC-----TTSSEEEEEETTSBCEEE--ETTTTE--EEECCB-CSSCEEEEEECSS
T ss_pred cCC--------------CCCEEEEEEe-----CCCCEEEEEeCCCeEEEE--ECCCCc--eEEEec-CCCcEEEEEEcCC
Confidence 554 4489999999 999999999999999999 566665 455554 4567999999999
Q ss_pred CCEEEEecCCCcEEEEEecCCceeeee-cCCCCCCcc----ccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 254 GCCLYSCSQDNFVRSWIFHGNSLSQVS-IPTNTPGLQ----SCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 254 ~~~l~s~~~d~~v~iwd~~~~~~~~~~-~~~~~~~~~----~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
+.++++++ |+.|++||++++...... .+....... +......+...+++++|+|||++|++|.
T Consensus 614 ~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs 681 (694)
T 3dm0_A 614 RYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGY 681 (694)
T ss_dssp SSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEE
T ss_pred CcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEc
Confidence 98777665 566999999987654322 111100000 0011112333578999999999999985
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.8e-28 Score=212.29 Aligned_cols=231 Identities=10% Similarity=0.042 Sum_probs=177.3
Q ss_pred CCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeeccccc--------------CC-CCcccccccC
Q 021036 15 SNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLR--------------LS-SKKYPVPQNG 79 (318)
Q Consensus 15 ~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~--------------~~-~~~~~v~~~~ 79 (318)
.+...++++|.|++|+ |...++++ . +|... +..++++|++. +. .|...|.+++
T Consensus 25 pDG~~iASas~D~TV~--d~~~~~~l---~----gh~~~---v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~va 92 (588)
T 2j04_A 25 RDGTLYLTTFPDISIG--QPKYAKDI---N----CNSKN---LFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCK 92 (588)
T ss_dssp TTSCEEEECSSSEEEE--EECCCSCC---S----SBGGG---TEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEE
T ss_pred CCCCEEEEEcCCceee--ccccccee---c----CCCcc---EEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEE
Confidence 4667789999999999 76555543 1 25554 44588888764 11 4566799999
Q ss_pred CCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccc-----cEEEEEeeeecCCCCCCCcEEEEEe
Q 021036 80 SSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNS-----WITSISLAVLSSDSSNPQVLLVTGS 154 (318)
Q Consensus 80 ~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~p~~~~~~~~~~~l~s~~ 154 (318)
|||+|++||+++.||.|++|+.+. .+..+. |.. .|.+++| +|+|++|++|+
T Consensus 93 wSPdG~~LAs~s~dg~V~iwd~~~----------------~l~~l~-~~~~~~~~sv~svaf-------SPDG~~LAsgs 148 (588)
T 2j04_A 93 PSPIDDWMAVLSNNGNVSVFKDNK----------------MLTNLD-SKGNLSSRTYHCFEW-------NPIESSIVVGN 148 (588)
T ss_dssp ECSSSSCEEEEETTSCEEEEETTE----------------EEEECC-CSSCSTTTCEEEEEE-------CSSSSCEEEEE
T ss_pred ECCCCCEEEEEeCCCcEEEEeCCc----------------eeeecc-CCCccccccEEEEEE-------cCCCCEEEEEc
Confidence 999999999999999999999653 445555 655 4999999 99999999999
Q ss_pred CCCcEEEEECCCcce-------eeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeecc
Q 021036 155 SDGSVRIWDGYIQEL-------QKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDI 227 (318)
Q Consensus 155 ~d~~v~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 227 (318)
.||+|++||+.++.. +.++..+. .+|...|.+++|+ |+| +++++.|+.|++|++
T Consensus 149 ~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~----------~gh~~~V~sVawS-----Pdg--Laass~D~tVrlWd~-- 209 (588)
T 2j04_A 149 EDGELQFFSIRKNSENTPEFYFESSIRLSD----------AGSKDWVTHIVWY-----EDV--LVAALSNNSVFSMTV-- 209 (588)
T ss_dssp TTSEEEEEECCCCTTTCCCCEEEEEEECSC----------TTCCCCEEEEEEE-----TTE--EEEEETTCCEEEECC--
T ss_pred CCCEEEEEECCCCccccccceeeeeeeccc----------ccccccEEEEEEc-----CCc--EEEEeCCCeEEEEEC--
Confidence 999999999998753 34442222 2355699999999 998 788888999999954
Q ss_pred CCCeee-Eeeeee-cccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEE
Q 021036 228 SCNKFD-KVGSYN-AHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMA 305 (318)
Q Consensus 228 ~~~~~~-~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 305 (318)
.++... ...+++ +|...|.+++|+ |..||+++ +++|++||+.++....... +|.+.|++++
T Consensus 210 ~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~--------------gh~~~V~~va 272 (588)
T 2j04_A 210 SASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKT--------------GSLENFHIIP 272 (588)
T ss_dssp CSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEEC--------------SCCSCCCEEE
T ss_pred CCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEc--------------CCCceEEEEE
Confidence 443321 234453 788899999999 68899887 6999999999877754331 2556899999
Q ss_pred E--cCCCcEEEEEe
Q 021036 306 V--SPGNLVVAMVQ 317 (318)
Q Consensus 306 ~--sp~~~~l~~~~ 317 (318)
| +||++.|+++.
T Consensus 273 ~~~s~d~~~La~a~ 286 (588)
T 2j04_A 273 LNHEKESTILLMSN 286 (588)
T ss_dssp ETTCSSCEEEEECS
T ss_pred eeeCCCCCEEEEEc
Confidence 9 99999998864
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-27 Score=203.52 Aligned_cols=228 Identities=10% Similarity=0.088 Sum_probs=176.4
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCc
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGK 95 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~ 95 (318)
+...+++++.|+.+++||+.+++.+..+.. |... +.+++|+|++ ++|++++.||.
T Consensus 43 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~----h~~~---v~~~~~~~~~------------------~~l~s~~~dg~ 97 (369)
T 3zwl_B 43 EGDLLFSCSKDSSASVWYSLNGERLGTLDG----HTGT---IWSIDVDCFT------------------KYCVTGSADYS 97 (369)
T ss_dssp TSCEEEEEESSSCEEEEETTTCCEEEEECC----CSSC---EEEEEECTTS------------------SEEEEEETTTE
T ss_pred CCCEEEEEeCCCEEEEEeCCCchhhhhhhh----cCCc---EEEEEEcCCC------------------CEEEEEeCCCe
Confidence 455789999999999999998876444432 3332 3346666655 99999999999
Q ss_pred EEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCC-----CcEEEEECCCccee
Q 021036 96 VSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSD-----GSVRIWDGYIQELQ 170 (318)
Q Consensus 96 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d-----~~v~iwd~~~~~~~ 170 (318)
|++||+.+++ .+..+. +...|.+++| ++++++|++++.+ +.|++||+..+...
T Consensus 98 i~iwd~~~~~--------------~~~~~~-~~~~v~~~~~-------~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~ 155 (369)
T 3zwl_B 98 IKLWDVSNGQ--------------CVATWK-SPVPVKRVEF-------SPCGNYFLAILDNVMKNPGSINIYEIERDSAT 155 (369)
T ss_dssp EEEEETTTCC--------------EEEEEE-CSSCEEEEEE-------CTTSSEEEEEECCBTTBCCEEEEEEEEECTTT
T ss_pred EEEEECCCCc--------------EEEEee-cCCCeEEEEE-------ccCCCEEEEecCCccCCCCEEEEEEecCCccc
Confidence 9999999854 444555 7889999999 8999999999999 99999999876543
Q ss_pred eeecccccccccceeeeeeccc--ceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCC-CeeeEeeeeecccCceeE
Q 021036 171 KSAEAHCVPFSLLKEVVTVNTV--PISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISC-NKFDKVGSYNAHDQVVTG 247 (318)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~--~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~-~~~~~~~~~~~h~~~v~~ 247 (318)
..+..... . .......+.. .+.+++|+ |++++|++++.||.|++| +.++ .+ .+..+..|...|.+
T Consensus 156 ~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~dg~i~i~--d~~~~~~--~~~~~~~~~~~v~~ 223 (369)
T 3zwl_B 156 HELTKVSE--E-PIHKIITHEGLDAATVAGWS-----TKGKYIIAGHKDGKISKY--DVSNNYE--YVDSIDLHEKSISD 223 (369)
T ss_dssp CCEEEECS--S-CSEEEECCTTCCCEEEEEEC-----GGGCEEEEEETTSEEEEE--ETTTTTE--EEEEEECCSSCEEE
T ss_pred eeeccccc--c-eeeeccCCcCccceeEEEEc-----CCCCEEEEEcCCCEEEEE--ECCCCcE--eEEEEecCCCceeE
Confidence 33221110 0 0011223333 89999999 999999999999999999 4555 33 66778889999999
Q ss_pred EEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 248 LAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 248 ~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
++|+|++.+|++++.|+.|++||++++......... ..+..++|+|++++++++.
T Consensus 224 ~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~l~~~~ 278 (369)
T 3zwl_B 224 MQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETD---------------CPLNTAVITPLKEFIILGG 278 (369)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS---------------SCEEEEEECSSSSEEEEEE
T ss_pred EEECCCCCEEEEecCCceEEEEECCCCceeeeecCC---------------CCceeEEecCCCceEEEee
Confidence 999999999999999999999999987665433322 3789999999999998864
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-27 Score=201.16 Aligned_cols=190 Identities=14% Similarity=0.168 Sum_probs=162.0
Q ss_pred CCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcE
Q 021036 70 SKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVL 149 (318)
Q Consensus 70 ~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~ 149 (318)
.|..+|.++.+++++++|++++.||.|++|++.+++ ......+..|...|.+++| ++++++
T Consensus 95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~------------~~~~~~~~~~~~~i~~~~~-------~~~~~~ 155 (337)
T 1gxr_A 95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT------------PRIKAELTSSAPACYALAI-------SPDSKV 155 (337)
T ss_dssp CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--------------EEEEEEECSSSCEEEEEE-------CTTSSE
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCC------------cceeeecccCCCceEEEEE-------CCCCCE
Confidence 577889999999999999999999999999998765 2355677889999999999 889999
Q ss_pred EEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCC
Q 021036 150 LVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISC 229 (318)
Q Consensus 150 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~ 229 (318)
|++++.|+.|++||+++++....+..+. ..+.+++|+ |++++|++++.||.|++| +.++
T Consensus 156 l~~~~~dg~v~~~d~~~~~~~~~~~~~~--------------~~i~~~~~~-----~~~~~l~~~~~dg~i~~~--d~~~ 214 (337)
T 1gxr_A 156 CFSCCSDGNIAVWDLHNQTLVRQFQGHT--------------DGASCIDIS-----NDGTKLWTGGLDNTVRSW--DLRE 214 (337)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCS--------------SCEEEEEEC-----TTSSEEEEEETTSEEEEE--ETTT
T ss_pred EEEEeCCCcEEEEeCCCCceeeeeeccc--------------CceEEEEEC-----CCCCEEEEEecCCcEEEE--ECCC
Confidence 9999999999999999988777665443 489999999 999999999999999999 5566
Q ss_pred CeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCC
Q 021036 230 NKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPG 309 (318)
Q Consensus 230 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 309 (318)
++ .+..+ .+...+.+++|+|++++|++++.|+.|++||+.++....+.. |...|.+++|+|+
T Consensus 215 ~~--~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~---------------~~~~v~~~~~~~~ 276 (337)
T 1gxr_A 215 GR--QLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHL---------------HESCVLSLKFAYC 276 (337)
T ss_dssp TE--EEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECC---------------CSSCEEEEEECTT
T ss_pred Cc--eEeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcC---------------CccceeEEEECCC
Confidence 65 34444 477889999999999999999999999999998876554332 4458999999999
Q ss_pred CcEEEEEe
Q 021036 310 NLVVAMVQ 317 (318)
Q Consensus 310 ~~~l~~~~ 317 (318)
+++|+++.
T Consensus 277 ~~~l~~~~ 284 (337)
T 1gxr_A 277 GKWFVSTG 284 (337)
T ss_dssp SSEEEEEE
T ss_pred CCEEEEec
Confidence 99999874
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=207.31 Aligned_cols=219 Identities=20% Similarity=0.337 Sum_probs=173.4
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCc
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGK 95 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~ 95 (318)
+...+++|+.|+.+++||+.+++.+..+.. |... +.++.|+ + ++|++|+.||.
T Consensus 145 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~---v~~~~~~--~------------------~~l~~~~~dg~ 197 (401)
T 4aez_A 145 DGSFLSVGLGNGLVDIYDVESQTKLRTMAG----HQAR---VGCLSWN--R------------------HVLSSGSRSGA 197 (401)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCEEEEECC----CSSC---EEEEEEE--T------------------TEEEEEETTSE
T ss_pred CCCEEEEECCCCeEEEEECcCCeEEEEecC----CCCc---eEEEEEC--C------------------CEEEEEcCCCC
Confidence 456789999999999999998876554432 3333 3446673 3 79999999999
Q ss_pred EEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecc
Q 021036 96 VSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEA 175 (318)
Q Consensus 96 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 175 (318)
|++||+.... ..+..+.+|...|.+++| ++++.+|++|+.|+.|++||+++++....+..
T Consensus 198 i~i~d~~~~~-------------~~~~~~~~~~~~v~~~~~-------~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 257 (401)
T 4aez_A 198 IHHHDVRIAN-------------HQIGTLQGHSSEVCGLAW-------RSDGLQLASGGNDNVVQIWDARSSIPKFTKTN 257 (401)
T ss_dssp EEEEETTSSS-------------CEEEEEECCSSCEEEEEE-------CTTSSEEEEEETTSCEEEEETTCSSEEEEECC
T ss_pred EEEEecccCc-------------ceeeEEcCCCCCeeEEEE-------cCCCCEEEEEeCCCeEEEccCCCCCccEEecC
Confidence 9999998532 356778899999999999 88999999999999999999998877766654
Q ss_pred cccccccceeeeeecccceeEEEEeeccCCCCc-eEEEEEe--CCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcC
Q 021036 176 HCVPFSLLKEVVTVNTVPISVLSLILPVQSPRL-MLLAVGK--GSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAF 252 (318)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~-~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 252 (318)
+ ...|.+++|+ |++ .++++++ .|+.|++| +.++++ .+..+. +...|.+++|+|
T Consensus 258 ~--------------~~~v~~~~~~-----p~~~~ll~~~~gs~d~~i~i~--d~~~~~--~~~~~~-~~~~v~~~~~s~ 313 (401)
T 4aez_A 258 H--------------NAAVKAVAWC-----PWQSNLLATGGGTMDKQIHFW--NAATGA--RVNTVD-AGSQVTSLIWSP 313 (401)
T ss_dssp C--------------SSCCCEEEEC-----TTSTTEEEEECCTTTCEEEEE--ETTTCC--EEEEEE-CSSCEEEEEECS
T ss_pred C--------------cceEEEEEEC-----CCCCCEEEEecCCCCCEEEEE--ECCCCC--EEEEEe-CCCcEEEEEECC
Confidence 4 3489999999 765 5677765 79999999 555655 455554 667899999999
Q ss_pred CCCEEEE--ecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 253 DGCCLYS--CSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 253 ~~~~l~s--~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
+++++++ |+.||.|++||+.++...... .+.+|...|.+++|+|++++|+++.
T Consensus 314 ~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~------------~~~~h~~~v~~~~~s~dg~~l~s~~ 368 (401)
T 4aez_A 314 HSKEIMSTHGFPDNNLSIWSYSSSGLTKQV------------DIPAHDTRVLYSALSPDGRILSTAA 368 (401)
T ss_dssp SSSEEEEEECTTTCEEEEEEEETTEEEEEE------------EEECCSSCCCEEEECTTSSEEEEEC
T ss_pred CCCeEEEEeecCCCcEEEEecCCccceeEE------------EecCCCCCEEEEEECCCCCEEEEEe
Confidence 9999998 558999999999886554322 1223556899999999999999874
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-27 Score=203.93 Aligned_cols=238 Identities=16% Similarity=0.130 Sum_probs=173.1
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCc
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGK 95 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~ 95 (318)
+...+++++.|+.+++||+++++........ .+... +.+++|+|++ ++|++++.||.
T Consensus 63 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~~~~~---v~~~~~~~~~------------------~~l~~~~~d~~ 119 (372)
T 1k8k_C 63 DSNRIVTCGTDRNAYVWTLKGRTWKPTLVIL--RINRA---ARCVRWAPNE------------------KKFAVGSGSRV 119 (372)
T ss_dssp TTTEEEEEETTSCEEEEEEETTEEEEEEECC--CCSSC---EEEEEECTTS------------------SEEEEEETTSS
T ss_pred CCCEEEEEcCCCeEEEEECCCCeeeeeEEee--cCCCc---eeEEEECCCC------------------CEEEEEeCCCE
Confidence 4566899999999999999877643333211 12222 3345666655 99999999999
Q ss_pred EEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCC---------
Q 021036 96 VSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYI--------- 166 (318)
Q Consensus 96 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~--------- 166 (318)
|++|+++.++.. .........|...|.+++| ++++++|++++.|+.|++||++.
T Consensus 120 v~i~d~~~~~~~----------~~~~~~~~~~~~~i~~~~~-------~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 182 (372)
T 1k8k_C 120 ISICYFEQENDW----------WVCKHIKKPIRSTVLSLDW-------HPNSVLLAAGSCDFKCRIFSAYIKEVEERPAP 182 (372)
T ss_dssp EEEEEEETTTTE----------EEEEEECTTCCSCEEEEEE-------CTTSSEEEEEETTSCEEEEECCCTTTSCCCCC
T ss_pred EEEEEecCCCcc----------eeeeeeecccCCCeeEEEE-------cCCCCEEEEEcCCCCEEEEEcccccccccccc
Confidence 999999876521 1122334678999999999 88999999999999999999753
Q ss_pred ---------cceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeee
Q 021036 167 ---------QELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGS 237 (318)
Q Consensus 167 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 237 (318)
++....+. .|...|.+++|+ |++.+|++++.||.|++| +.++++ .+..
T Consensus 183 ~~~~~~~~~~~~~~~~~--------------~~~~~v~~~~~~-----~~~~~l~~~~~d~~i~i~--d~~~~~--~~~~ 239 (372)
T 1k8k_C 183 TPWGSKMPFGELMFESS--------------SSCGWVHGVCFS-----ANGSRVAWVSHDSTVCLA--DADKKM--AVAT 239 (372)
T ss_dssp BTTBSCCCTTCEEEECC--------------CCSSCEEEEEEC-----SSSSEEEEEETTTEEEEE--EGGGTT--EEEE
T ss_pred cccccccchhhheEecC--------------CCCCeEEEEEEC-----CCCCEEEEEeCCCEEEEE--ECCCCc--eeEE
Confidence 33333332 455689999999 999999999999999999 455555 6777
Q ss_pred eecccCceeEEEEcCCCCEEEEecCCCcEEEEEecC--CceeeeecCCC---------------------CCCc--c-cc
Q 021036 238 YNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHG--NSLSQVSIPTN---------------------TPGL--Q-SC 291 (318)
Q Consensus 238 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~--~~~~~~~~~~~---------------------~~~~--~-~~ 291 (318)
+..|...|.+++|+|++.+++++ .|+.|++|++.. +.......... .... + ..
T Consensus 240 ~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (372)
T 1k8k_C 240 LASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAG 318 (372)
T ss_dssp EECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------
T ss_pred EccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccc
Confidence 88899999999999999988887 899999999988 53221110000 0000 0 00
Q ss_pred ccC-CCcceeeeEEEEc-CCC---cEEEEEe
Q 021036 292 TDL-PDAFVSCLGMAVS-PGN---LVVAMVQ 317 (318)
Q Consensus 292 ~~~-~~h~~~v~~v~~s-p~~---~~l~~~~ 317 (318)
..+ .+|...|++++|. ++| .+|++|.
T Consensus 319 ~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~ 349 (372)
T 1k8k_C 319 AGLDSLHKNSVSQISVLSGGKAKCSQFCTTG 349 (372)
T ss_dssp CCCSSSSSSCEEEEEEEESTTTSCSEEEEEE
T ss_pred ccccccccCCcceeEEecCCCcceeeEEEec
Confidence 122 4899999999977 577 8999875
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.4e-29 Score=213.22 Aligned_cols=205 Identities=12% Similarity=0.065 Sum_probs=152.4
Q ss_pred cccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEE
Q 021036 72 KYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLV 151 (318)
Q Consensus 72 ~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~ 151 (318)
..+|.++++++++++|++|+.||.|++|++.++. .+.+..+.+|...|.+++| ++++++|+
T Consensus 11 ~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~------------~~~~~~~~~h~~~v~~~~~-------s~~~~~l~ 71 (377)
T 3dwl_C 11 PKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG------------WKHARTFSDHDKIVTCVDW-------APKSNRIV 71 (377)
T ss_dssp SSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE------------EEECCCBCCCSSCEEEEEE-------CTTTCCEE
T ss_pred CCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc------------eEEEEEEecCCceEEEEEE-------eCCCCEEE
Confidence 3466777777777999999999999999999752 2466788899999999999 89999999
Q ss_pred EEeCCCcEEEEECCCcc---eeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccC
Q 021036 152 TGSSDGSVRIWDGYIQE---LQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDIS 228 (318)
Q Consensus 152 s~~~d~~v~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~ 228 (318)
+++.|++|++||+.+++ ....+. .|...|.+++|+ |++++|++++.|+.|++|++ +
T Consensus 72 s~s~d~~v~vwd~~~~~~~~~~~~~~--------------~~~~~v~~~~~~-----~~~~~l~~~~~d~~i~iwd~--~ 130 (377)
T 3dwl_C 72 TCSQDRNAYVYEKRPDGTWKQTLVLL--------------RLNRAATFVRWS-----PNEDKFAVGSGARVISVCYF--E 130 (377)
T ss_dssp EEETTSSEEEC------CCCCEEECC--------------CCSSCEEEEECC-----TTSSCCEEEESSSCEEECCC---
T ss_pred EEeCCCeEEEEEcCCCCceeeeeEec--------------ccCCceEEEEEC-----CCCCEEEEEecCCeEEEEEE--C
Confidence 99999999999999876 233232 345589999999 99999999999999999954 3
Q ss_pred CCe-eeEeeeeec-ccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecC-CCCCCcc---ccccCCCcceeee
Q 021036 229 CNK-FDKVGSYNA-HDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIP-TNTPGLQ---SCTDLPDAFVSCL 302 (318)
Q Consensus 229 ~~~-~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~-~~~~~~~---~~~~~~~h~~~v~ 302 (318)
..+ +.....+.+ |...|++++|+|++++|++++.|+.|++||+........... .....+. ....+ +|...|.
T Consensus 131 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~ 209 (377)
T 3dwl_C 131 QENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVH 209 (377)
T ss_dssp ----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEE
T ss_pred CcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEE
Confidence 432 123456666 999999999999999999999999999999975432211100 0000000 11233 7888999
Q ss_pred EEEEcCCCcEEEEEe
Q 021036 303 GMAVSPGNLVVAMVQ 317 (318)
Q Consensus 303 ~v~~sp~~~~l~~~~ 317 (318)
+++|+|++++|+++.
T Consensus 210 ~~~~sp~~~~l~~~~ 224 (377)
T 3dwl_C 210 AVGFSPSGNALAYAG 224 (377)
T ss_dssp EEEECTTSSCEEEEE
T ss_pred EEEECCCCCEEEEEe
Confidence 999999999999874
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.1e-28 Score=210.89 Aligned_cols=249 Identities=12% Similarity=0.128 Sum_probs=177.8
Q ss_pred CccceEEeeCCCceeEeecC---CCCCCCceecchhccccccccceeeeecccccCCCCcccccccC--CCCCccEEEEe
Q 021036 16 NTHPTVAASKSKGNSITKIP---SNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNG--SSNWFSILAVG 90 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~--~s~~~~~l~~g 90 (318)
+...+++++.|+++++||++ +++........ .+..+.|+|.. +...+.++. +++++++|++|
T Consensus 122 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~---------~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~ 188 (437)
T 3gre_A 122 NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE---------CIRKINLKNFG----KNEYAVRMRAFVNEEKSLLVAL 188 (437)
T ss_dssp TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE---------EEEEEEGGGGS----SCCCEEEEEEEECSSCEEEEEE
T ss_pred CCCEEEEEeCCCEEEEEEeccccCCceeeccccc---------eeEEEEccCcc----cccCceEEEEEEcCCCCEEEEE
Confidence 45678999999999999995 44443322211 12335565532 234455555 55677999999
Q ss_pred cCCCcEEEEEccCCccccccccccCCceeEEeeecc--ccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcc
Q 021036 91 GRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQA--HNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQE 168 (318)
Q Consensus 91 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 168 (318)
+.||.|++||+++++ .+..+.+ |...|++++| ++++++|++|+.||.|++||+++++
T Consensus 189 ~~d~~i~iwd~~~~~--------------~~~~~~~~~h~~~v~~~~~-------s~~~~~l~s~~~dg~i~iwd~~~~~ 247 (437)
T 3gre_A 189 TNLSRVIIFDIRTLE--------------RLQIIENSPRHGAVSSICI-------DEECCVLILGTTRGIIDIWDIRFNV 247 (437)
T ss_dssp ETTSEEEEEETTTCC--------------EEEEEECCGGGCCEEEEEE-------CTTSCEEEEEETTSCEEEEETTTTE
T ss_pred eCCCeEEEEeCCCCe--------------eeEEEccCCCCCceEEEEE-------CCCCCEEEEEcCCCeEEEEEcCCcc
Confidence 999999999999854 5566776 8999999999 8999999999999999999999988
Q ss_pred eeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeec--------
Q 021036 169 LQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNA-------- 240 (318)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~-------- 240 (318)
.+..+.. .+..+|.++++++.+. +++.+|++|+.||.|++| |.++++ .+..+.+
T Consensus 248 ~~~~~~~-------------~~~~~v~~~~~~~~~s-~~~~~l~s~~~dg~i~iw--d~~~~~--~~~~~~~~~~~~~~~ 309 (437)
T 3gre_A 248 LIRSWSF-------------GDHAPITHVEVCQFYG-KNSVIVVGGSSKTFLTIW--NFVKGH--CQYAFINSDEQPSME 309 (437)
T ss_dssp EEEEEBC-------------TTCEEEEEEEECTTTC-TTEEEEEEESTTEEEEEE--ETTTTE--EEEEEESSSSCCCGG
T ss_pred EEEEEec-------------CCCCceEEEEeccccC-CCccEEEEEcCCCcEEEE--EcCCCc--EEEEEEcCCCCCccc
Confidence 7776541 1233789997763333 678999999999999999 555555 3333332
Q ss_pred ------------------ccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceee-eecCCCCCC-cc-----------
Q 021036 241 ------------------HDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQ-VSIPTNTPG-LQ----------- 289 (318)
Q Consensus 241 ------------------h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~-~~~~~~~~~-~~----------- 289 (318)
|...|++++|+ ++++|++++.|+.|++||+.+++... +..+..... +.
T Consensus 310 ~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (437)
T 3gre_A 310 HFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTML 388 (437)
T ss_dssp GGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEE
T ss_pred eecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEE
Confidence 56678889999 77899999999999999998866443 222110000 00
Q ss_pred ----------ccccCCCcceeeeEEEEcCC--CcEEEEEe
Q 021036 290 ----------SCTDLPDAFVSCLGMAVSPG--NLVVAMVQ 317 (318)
Q Consensus 290 ----------~~~~~~~h~~~v~~v~~sp~--~~~l~~~~ 317 (318)
.......|...|++++|+++ +.+|++|.
T Consensus 389 ~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~ 428 (437)
T 3gre_A 389 LRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACD 428 (437)
T ss_dssp EEECC-------------CCCEEEEEEEESSSSEEEEEEE
T ss_pred EEecccccccccCcccccccceeeEeeeccCCceEEEEEc
Confidence 00122358999999999998 88999985
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.96 E-value=7e-28 Score=206.46 Aligned_cols=189 Identities=13% Similarity=0.027 Sum_probs=144.3
Q ss_pred EEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEEEE
Q 021036 21 VAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWR 100 (318)
Q Consensus 21 ~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~ 100 (318)
++++.|++|++||+++++++..+. +... +.+++|+|++ ++|++++.+ .+++|+
T Consensus 151 as~~~d~~i~iwd~~~~~~~~~~~-----~~~~---V~~v~fspdg------------------~~l~s~s~~-~~~~~~ 203 (365)
T 4h5i_A 151 ASSKVPAIMRIIDPSDLTEKFEIE-----TRGE---VKDLHFSTDG------------------KVVAYITGS-SLEVIS 203 (365)
T ss_dssp EESCSSCEEEEEETTTTEEEEEEE-----CSSC---CCEEEECTTS------------------SEEEEECSS-CEEEEE
T ss_pred EECCCCCEEEEeECCCCcEEEEeC-----CCCc---eEEEEEccCC------------------ceEEeccce-eEEEEE
Confidence 355679999999999887654432 2232 3346777766 999999855 566677
Q ss_pred ccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCC----cEEEEECCCcceeeeeccc
Q 021036 101 ICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDG----SVRIWDGYIQELQKSAEAH 176 (318)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~----~v~iwd~~~~~~~~~~~~~ 176 (318)
..+++. ........|...|.+++| ++++.++++++.|+ .+++|++..........
T Consensus 204 ~~~~~~------------~~~~~~~~~~~~v~~v~f-------spdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~-- 262 (365)
T 4h5i_A 204 TVTGSC------------IARKTDFDKNWSLSKINF-------IADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRS-- 262 (365)
T ss_dssp TTTCCE------------EEEECCCCTTEEEEEEEE-------EETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEE--
T ss_pred eccCcc------------eeeeecCCCCCCEEEEEE-------cCCCCEEEEEecCCcceeEEeecccccceecceee--
Confidence 666542 233445678899999999 89999999999887 68888887654321110
Q ss_pred ccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeee-ecccCceeEEEEcCCCC
Q 021036 177 CVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSY-NAHDQVVTGLAWAFDGC 255 (318)
Q Consensus 177 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~ 255 (318)
.....|..+|++++|+ |+|++||+|+.|++|+|| |.++++ ++.++ .+|...|++++|+|||+
T Consensus 263 --------~~~~~~~~~V~~~~~S-----pdg~~lasgs~D~~V~iw--d~~~~~--~~~~~~~gH~~~V~~v~fSpdg~ 325 (365)
T 4h5i_A 263 --------KQVTNRFKGITSMDVD-----MKGELAVLASNDNSIALV--KLKDLS--MSKIFKQAHSFAITEVTISPDST 325 (365)
T ss_dssp --------EEEESSCSCEEEEEEC-----TTSCEEEEEETTSCEEEE--ETTTTE--EEEEETTSSSSCEEEEEECTTSC
T ss_pred --------eeecCCCCCeEeEEEC-----CCCCceEEEcCCCEEEEE--ECCCCc--EEEEecCcccCCEEEEEECCCCC
Confidence 1123455689999999 999999999999999999 666766 56664 68999999999999999
Q ss_pred EEEEecCCCcEEEEEecCC
Q 021036 256 CLYSCSQDNFVRSWIFHGN 274 (318)
Q Consensus 256 ~l~s~~~d~~v~iwd~~~~ 274 (318)
+|++|+.|++|+|||+..+
T Consensus 326 ~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 326 YVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEEEETTSEEEEEECCTT
T ss_pred EEEEEeCCCeEEEEEcCCC
Confidence 9999999999999999653
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.7e-28 Score=210.66 Aligned_cols=246 Identities=15% Similarity=0.201 Sum_probs=171.3
Q ss_pred CccceEEeeCCCceeEeecCC---CCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecC
Q 021036 16 NTHPTVAASKSKGNSITKIPS---NCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGR 92 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~ 92 (318)
+...+++|+.|++|++||+.+ +....... .+.|... +.+++|+|++ ++|++|+.
T Consensus 75 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~--~~~h~~~---v~~~~~~~~~------------------~~l~s~s~ 131 (437)
T 3gre_A 75 ETPYLITGSDQGVIKIWNLKEIIVGEVYSSSL--TYDCSST---VTQITMIPNF------------------DAFAVSSK 131 (437)
T ss_dssp SSCEEEEEETTSEEEEEEHHHHHTTCCCSCSE--EEECSSC---EEEEEECTTS------------------SEEEEEET
T ss_pred CCCEEEEecCCceEEEeECcccccCcccceee--eccCCCC---EEEEEEeCCC------------------CEEEEEeC
Confidence 566789999999999999876 33211111 1123333 3346666655 99999999
Q ss_pred CCcEEEEEcc---CCccccccccccCCceeEEeeec--c--ccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECC
Q 021036 93 SGKVSLWRIC---VPKCYSVEDCKVPTTAVLIGLFQ--A--HNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGY 165 (318)
Q Consensus 93 dg~i~iw~~~---~~~~~~~~~~~~~~~~~~~~~~~--~--h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~ 165 (318)
||.|++||++ +++...... ...+..+. . +...+.++.+.+ ++++.+|++++.|+.|++||++
T Consensus 132 dg~i~vwd~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~d~~i~iwd~~ 200 (437)
T 3gre_A 132 DGQIIVLKVNHYQQESEVKFLN------CECIRKINLKNFGKNEYAVRMRAFV-----NEEKSLLVALTNLSRVIIFDIR 200 (437)
T ss_dssp TSEEEEEEEEEEEETTEEEEEE------EEEEEEEEGGGGSSCCCEEEEEEEE-----CSSCEEEEEEETTSEEEEEETT
T ss_pred CCEEEEEEeccccCCceeeccc------cceeEEEEccCcccccCceEEEEEE-----cCCCCEEEEEeCCCeEEEEeCC
Confidence 9999999995 433211000 01112221 1 455677776311 5788999999999999999999
Q ss_pred CcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeee-cccCc
Q 021036 166 IQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYN-AHDQV 244 (318)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-~h~~~ 244 (318)
+++.+..+..+. |...|++++|+ |++.+|++|+.||.|++| |++.++ ++..+. .|...
T Consensus 201 ~~~~~~~~~~~~------------h~~~v~~~~~s-----~~~~~l~s~~~dg~i~iw--d~~~~~--~~~~~~~~~~~~ 259 (437)
T 3gre_A 201 TLERLQIIENSP------------RHGAVSSICID-----EECCVLILGTTRGIIDIW--DIRFNV--LIRSWSFGDHAP 259 (437)
T ss_dssp TCCEEEEEECCG------------GGCCEEEEEEC-----TTSCEEEEEETTSCEEEE--ETTTTE--EEEEEBCTTCEE
T ss_pred CCeeeEEEccCC------------CCCceEEEEEC-----CCCCEEEEEcCCCeEEEE--EcCCcc--EEEEEecCCCCc
Confidence 998887776421 34489999999 999999999999999999 566665 566665 67889
Q ss_pred eeEEEEcC----CCCEEEEecCCCcEEEEEecCCceee-eecCCCCCCcc---------ccccCCC--cceeeeEEEEcC
Q 021036 245 VTGLAWAF----DGCCLYSCSQDNFVRSWIFHGNSLSQ-VSIPTNTPGLQ---------SCTDLPD--AFVSCLGMAVSP 308 (318)
Q Consensus 245 v~~~~~~~----~~~~l~s~~~d~~v~iwd~~~~~~~~-~~~~~~~~~~~---------~~~~~~~--h~~~v~~v~~sp 308 (318)
|.+++|+| ++.+|++++.|+.|++||++++.... +..+....... ....+.+ |...|++++|+
T Consensus 260 v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~- 338 (437)
T 3gre_A 260 ITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS- 338 (437)
T ss_dssp EEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-
T ss_pred eEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-
Confidence 99996664 57799999999999999998766443 33222111111 0012334 88999999999
Q ss_pred CCcEEEEEe
Q 021036 309 GNLVVAMVQ 317 (318)
Q Consensus 309 ~~~~l~~~~ 317 (318)
++++|++|.
T Consensus 339 ~~~~l~s~~ 347 (437)
T 3gre_A 339 NDKILLTDE 347 (437)
T ss_dssp TTEEEEEEG
T ss_pred CceEEEecC
Confidence 788888874
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.5e-27 Score=202.60 Aligned_cols=195 Identities=15% Similarity=0.084 Sum_probs=159.5
Q ss_pred cCCCCcccccccCCCCCc-cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCC
Q 021036 67 RLSSKKYPVPQNGSSNWF-SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSN 145 (318)
Q Consensus 67 ~~~~~~~~v~~~~~s~~~-~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 145 (318)
.+.+|...|.++++++++ ++|++|+.||.|+|||+.+++. .......+|...|.+++| ++
T Consensus 68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------------~~~~~~~~h~~~v~~~~~-------~~ 128 (383)
T 3ei3_B 68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNK------------TSFIQGMGPGDAITGMKF-------NQ 128 (383)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTC------------EEEECCCSTTCBEEEEEE-------ET
T ss_pred eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccc------------ceeeecCCcCCceeEEEe-------CC
Confidence 456788999999999998 9999999999999999997652 222333579999999999 77
Q ss_pred -CCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEee
Q 021036 146 -PQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWK 224 (318)
Q Consensus 146 -~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~ 224 (318)
++++|++++.|+.|++||+.+ .....+..+. .+...|.+++|+ |++.+|++|+.|+.|++||
T Consensus 129 ~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~-----------~~~~~v~~~~~~-----~~~~~l~~~~~d~~i~i~d 191 (383)
T 3ei3_B 129 FNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTD-----------SWDYWYCCVDVS-----VSRQMLATGDSTGRLLLLG 191 (383)
T ss_dssp TEEEEEEEEETTTEEEEEETTS-CEEEEEECCC-----------CSSCCEEEEEEE-----TTTTEEEEEETTSEEEEEE
T ss_pred CCCCEEEEEeCCCEEEEEECCC-CceEEEeccC-----------CCCCCeEEEEEC-----CCCCEEEEECCCCCEEEEE
Confidence 779999999999999999985 3343333222 234579999999 9999999999999999995
Q ss_pred eccCCCeeeEeeeeecccCceeEEEEcCCCC-EEEEecCCCcEEEEEecC----CceeeeecCCCCCCccccccCCCcce
Q 021036 225 CDISCNKFDKVGSYNAHDQVVTGLAWAFDGC-CLYSCSQDNFVRSWIFHG----NSLSQVSIPTNTPGLQSCTDLPDAFV 299 (318)
Q Consensus 225 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~----~~~~~~~~~~~~~~~~~~~~~~~h~~ 299 (318)
+ + ++ ++..+.+|...|.+++|+|+++ +|++++.|+.|++||+++ +...... +|..
T Consensus 192 ~--~-~~--~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---------------~~~~ 251 (383)
T 3ei3_B 192 L--D-GH--EIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM---------------PHEK 251 (383)
T ss_dssp T--T-SC--EEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE---------------ECSS
T ss_pred C--C-CC--EEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe---------------cCCC
Confidence 4 3 33 6677889999999999999999 999999999999999987 3333222 2445
Q ss_pred eeeEEEEcC-CCcEEEEEe
Q 021036 300 SCLGMAVSP-GNLVVAMVQ 317 (318)
Q Consensus 300 ~v~~v~~sp-~~~~l~~~~ 317 (318)
.|.+++|+| ++++|+++.
T Consensus 252 ~v~~~~~s~~~~~~l~~~~ 270 (383)
T 3ei3_B 252 PVNAAYFNPTDSTKLLTTD 270 (383)
T ss_dssp CEEEEEECTTTSCEEEEEE
T ss_pred ceEEEEEcCCCCCEEEEEc
Confidence 899999999 999999874
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-27 Score=195.70 Aligned_cols=240 Identities=11% Similarity=-0.017 Sum_probs=158.3
Q ss_pred cceEEeeCCCceeEeecCCC---CCCCceecchhccccccccceeeeeccccc-------CCCCcccccccCCCCC----
Q 021036 18 HPTVAASKSKGNSITKIPSN---CCLPLITADQYASRSAMLHSLAVAWSPVLR-------LSSKKYPVPQNGSSNW---- 83 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~-------~~~~~~~v~~~~~s~~---- 83 (318)
.+.+......+|++|+..++ +++..... +... +..+.+.|+.. -.-+..+|..+.++|+
T Consensus 54 ~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~----~~~~---v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~ 126 (356)
T 2w18_A 54 EPCIITACEDVVSLWKALDAWQWEKLYTWHF----AEVP---VLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESE 126 (356)
T ss_dssp EEEEEEEESSEEEEEEESSSSBEEEEEEEEC----CSSC---EEEECCCTTCCSCEEEEECSSSEEEEEEECC------C
T ss_pred ccEEEEeccceEEEcccCCCccceeeEEEec----cCce---eEEEEEcCcccceeeeeeccccccceEEEEECCCcccc
Confidence 34555555678999999987 34333333 2222 33366666321 1124567778888888
Q ss_pred ccEEEEecC--------------------CCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCC
Q 021036 84 FSILAVGGR--------------------SGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDS 143 (318)
Q Consensus 84 ~~~l~~g~~--------------------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~ 143 (318)
++++++++. |+.|++|++.. +++.+..+.+|...++.++|+|.
T Consensus 127 ~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~-------------dG~~~~s~~~~~~~v~~l~fs~~---- 189 (356)
T 2w18_A 127 KQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAE-------------DGGGKENQFLMPPEETILTFAEV---- 189 (356)
T ss_dssp CEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECT-------------TSCEEEEEEECCCSSCEEEEEEE----
T ss_pred ccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECC-------------CCceeeeeccCCCceeeEEeecc----
Confidence 777777653 55555555532 24566677788888999999221
Q ss_pred CCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEE------------
Q 021036 144 SNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLL------------ 211 (318)
Q Consensus 144 ~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l------------ 211 (318)
..++++|++++.|++|+|||+.++++++++..+.. +...+.+++|+ |+|.++
T Consensus 190 ~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~-----------~v~~v~~vafS-----pdG~~lvs~s~~~~~w~l 253 (356)
T 2w18_A 190 QGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDS-----------YQASVCHKAYS-----EMGLLFIVLSHPCAKESE 253 (356)
T ss_dssp ETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC--------------CCCEEEEEE-----ETTEEEEEEC--------
T ss_pred CCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCc-----------ceeeeEEEEEC-----CCCCEEEEeccCCCccee
Confidence 12678999999999999999999999998865432 12267778898 888876
Q ss_pred EEEeCCCcEEEeeeccCCCeeeEeeee-----ecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCC
Q 021036 212 AVGKGSGSFDLWKCDISCNKFDKVGSY-----NAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTP 286 (318)
Q Consensus 212 ~~~~~dg~i~vw~~~~~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~ 286 (318)
++|+.|++|++| +..+++ .+..+ .+|...+.+..++ +.++++++.|++|+|||+.++++...
T Consensus 254 aSGs~D~tIklW--d~~tgk--~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~t------- 320 (356)
T 2w18_A 254 SLRSPVFQLIVI--NPKTTL--SVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTAL------- 320 (356)
T ss_dssp ----CCEEEEEE--ETTTTE--EEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEE-------
T ss_pred eccCCCcEEEEE--ECCCCE--EEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEE-------
Confidence 668889999999 566766 33332 3566555444444 78999999999999999999876542
Q ss_pred CccccccCCCcceeee-EEEEcCCCcEEEEEe
Q 021036 287 GLQSCTDLPDAFVSCL-GMAVSPGNLVVAMVQ 317 (318)
Q Consensus 287 ~~~~~~~~~~h~~~v~-~v~~sp~~~~l~~~~ 317 (318)
+.+|...+. .++|+|||++|++|.
T Consensus 321 -------L~gH~~~vvs~vafSPDG~~LaSGS 345 (356)
T 2w18_A 321 -------LPPVSDQHWSFVKWSGTDSHLLAGQ 345 (356)
T ss_dssp -------ECCC--CCCCEEEECSSSSEEEEEC
T ss_pred -------ecCCCCCeEEEEEECCCCCEEEEEE
Confidence 223444444 689999999999984
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-27 Score=200.71 Aligned_cols=234 Identities=13% Similarity=0.076 Sum_probs=173.5
Q ss_pred ccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCcc-EEEEecCCCc
Q 021036 17 THPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFS-ILAVGGRSGK 95 (318)
Q Consensus 17 ~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~-~l~~g~~dg~ 95 (318)
...+++++.|+.+++||+.+++....... ...+... +.+++|+|++ + +|++|+.||.
T Consensus 23 ~~~l~~~~~d~~v~iw~~~~~~~~~~~~~-~~~~~~~---v~~~~~~~~~------------------~~~l~~~~~dg~ 80 (342)
T 1yfq_A 23 KSLLLITSWDGSLTVYKFDIQAKNVDLLQ-SLRYKHP---LLCCNFIDNT------------------DLQIYVGTVQGE 80 (342)
T ss_dssp GTEEEEEETTSEEEEEEEETTTTEEEEEE-EEECSSC---EEEEEEEESS------------------SEEEEEEETTSC
T ss_pred CCEEEEEcCCCeEEEEEeCCCCcccccee-eeecCCc---eEEEEECCCC------------------CcEEEEEcCCCe
Confidence 45689999999999999987652111111 1123333 4457777766 9 9999999999
Q ss_pred EEEEEc-cCCccccccccccCCceeEEeeecc--ccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCC------
Q 021036 96 VSLWRI-CVPKCYSVEDCKVPTTAVLIGLFQA--HNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYI------ 166 (318)
Q Consensus 96 i~iw~~-~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~------ 166 (318)
|++|++ .+++ ...+.+ |...|.+++| ++ +.+|++++.|+.|++||+++
T Consensus 81 i~~wd~~~~~~---------------~~~~~~~~~~~~v~~l~~-------~~-~~~l~s~~~d~~i~iwd~~~~~~~~~ 137 (342)
T 1yfq_A 81 ILKVDLIGSPS---------------FQALTNNEANLGICRICK-------YG-DDKLIAASWDGLIEVIDPRNYGDGVI 137 (342)
T ss_dssp EEEECSSSSSS---------------EEECBSCCCCSCEEEEEE-------ET-TTEEEEEETTSEEEEECHHHHTTBCE
T ss_pred EEEEEeccCCc---------------eEeccccCCCCceEEEEe-------CC-CCEEEEEcCCCeEEEEcccccccccc
Confidence 999999 7643 256677 9999999999 77 88999999999999999887
Q ss_pred ---cceeeeeccccccc-----------------------------ccceeeeeecccceeEEEEeeccCCC-CceEEEE
Q 021036 167 ---QELQKSAEAHCVPF-----------------------------SLLKEVVTVNTVPISVLSLILPVQSP-RLMLLAV 213 (318)
Q Consensus 167 ---~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~v~~l~~~~~~~~~-~~~~l~~ 213 (318)
++....+. +.... .........+...+.+++|+ | +++++++
T Consensus 138 ~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~-----~~~~~~l~~ 211 (342)
T 1yfq_A 138 AVKNLNSNNTK-VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALL-----PKEQEGYAC 211 (342)
T ss_dssp EEEESCSSSSS-SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEEC-----SGGGCEEEE
T ss_pred cccCCeeeEEe-eCCceEEEEecCCcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEEC-----CCCCCEEEE
Confidence 55443332 11100 00111233456789999999 9 9999999
Q ss_pred EeCCCcEEEeeeccC--CCeeeEeeeeecccC---------ceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecC
Q 021036 214 GKGSGSFDLWKCDIS--CNKFDKVGSYNAHDQ---------VVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIP 282 (318)
Q Consensus 214 ~~~dg~i~vw~~~~~--~~~~~~~~~~~~h~~---------~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 282 (318)
++.||.|++|+++.. .........+..|.. .|.+++|+|++++|++++.||.|++||+.+++...
T Consensus 212 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~---- 287 (342)
T 1yfq_A 212 SSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIK---- 287 (342)
T ss_dssp EETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE----
T ss_pred EecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhh----
Confidence 999999999977654 100124556666754 99999999999999999999999999998876543
Q ss_pred CCCCCccccccCCCc-ceeeeEEEEcCCCcEEEEEe
Q 021036 283 TNTPGLQSCTDLPDA-FVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 283 ~~~~~~~~~~~~~~h-~~~v~~v~~sp~~~~l~~~~ 317 (318)
.+.+| ...|.+++ |++++|+++.
T Consensus 288 ----------~~~~~h~~~v~~~~--~~~~~l~s~s 311 (342)
T 1yfq_A 288 ----------NFAKFNEDSVVKIA--CSDNILCLAT 311 (342)
T ss_dssp ----------ECCCCSSSEEEEEE--ECSSEEEEEE
T ss_pred ----------hhhcccCCCceEec--CCCCeEEEEe
Confidence 22334 67999999 9999999874
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6e-27 Score=230.00 Aligned_cols=221 Identities=19% Similarity=0.239 Sum_probs=173.2
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCc
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGK 95 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~ 95 (318)
+...+++|+.|++|++||+.+++.+..+.. |... +.+++|+|++ ++|++|+.||.
T Consensus 626 ~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~----h~~~---v~~~~~s~~~------------------~~l~s~~~d~~ 680 (1249)
T 3sfz_A 626 DGQRIASCGADKTLQVFKAETGEKLLDIKA----HEDE---VLCCAFSSDD------------------SYIATCSADKK 680 (1249)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCEEEEECC----CSSC---EEEEEECTTS------------------SEEEEEETTSE
T ss_pred CCCEEEEEeCCCeEEEEECCCCCEEEEecc----CCCC---EEEEEEecCC------------------CEEEEEeCCCe
Confidence 445679999999999999998876444432 3332 3345666655 99999999999
Q ss_pred EEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCC--CCcEEEEEeCCCcEEEEECCCcceeeee
Q 021036 96 VSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSN--PQVLLVTGSSDGSVRIWDGYIQELQKSA 173 (318)
Q Consensus 96 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 173 (318)
|++||+.++ +.+..+.+|...|.+++| ++ ++.++++|+.|+.|++||+.+++....+
T Consensus 681 v~vwd~~~~--------------~~~~~~~~~~~~v~~~~~-------~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~ 739 (1249)
T 3sfz_A 681 VKIWDSATG--------------KLVHTYDEHSEQVNCCHF-------TNKSNHLLLATGSNDFFLKLWDLNQKECRNTM 739 (1249)
T ss_dssp EEEEETTTC--------------CEEEEEECCSSCEEEEEE-------CSSSSCCEEEEEETTSCEEEEETTSSSEEEEE
T ss_pred EEEEECCCC--------------ceEEEEcCCCCcEEEEEE-------ecCCCceEEEEEeCCCeEEEEECCCcchhhee
Confidence 999999985 466788899999999999 66 5568999999999999999999887776
Q ss_pred cccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeE-------------------
Q 021036 174 EAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDK------------------- 234 (318)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~------------------- 234 (318)
..|. ..|.+++|+ |++.++++++.||.|++||+. ++....
T Consensus 740 ~~h~--------------~~v~~~~~s-----p~~~~l~s~s~dg~v~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1249)
T 3sfz_A 740 FGHT--------------NSVNHCRFS-----PDDELLASCSADGTLRLWDVR--SANERKSINVKRFFLSSEDPPEDVE 798 (1249)
T ss_dssp CCCS--------------SCEEEEEEC-----SSTTEEEEEESSSEEEEEEGG--GTEEEEEEECCCCC--------CCC
T ss_pred cCCC--------------CCEEEEEEe-----cCCCEEEEEECCCeEEEEeCC--CCcccceecccccccccCCcccccc
Confidence 6544 489999999 999999999999999999643 322100
Q ss_pred ---------------------------------eeee-ecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeee
Q 021036 235 ---------------------------------VGSY-NAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVS 280 (318)
Q Consensus 235 ---------------------------------~~~~-~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 280 (318)
+..+ .+|...|.+++|+|++.++++++.|+.|++||+.++....
T Consensus 799 ~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~-- 876 (1249)
T 3sfz_A 799 VIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVA-- 876 (1249)
T ss_dssp CCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEE--
T ss_pred ceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceee--
Confidence 0111 2567788888888888888888888888888887765442
Q ss_pred cCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 281 IPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 281 ~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
.+.+|...|.+++|+|+|++|+++.
T Consensus 877 ------------~~~~h~~~v~~v~~spdg~~l~s~s 901 (1249)
T 3sfz_A 877 ------------DCRGHLSWVHGVMFSPDGSSFLTAS 901 (1249)
T ss_dssp ------------EECCCSSCEEEEEECTTSSEEEEEE
T ss_pred ------------ecCCCccceEEEEECCCCCEEEEEe
Confidence 2334667999999999999999874
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-26 Score=204.37 Aligned_cols=154 Identities=20% Similarity=0.308 Sum_probs=110.6
Q ss_pred eEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEE
Q 021036 119 VLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLS 198 (318)
Q Consensus 119 ~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 198 (318)
+.+..+.+|...|.++.| ++.++++++.|+.|++||+++++....+..+ ...+.++.
T Consensus 270 ~~~~~~~~~~~~v~~~~~---------~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--------------~~~v~~~~ 326 (445)
T 2ovr_B 270 TCLHTLQGHTNRVYSLQF---------DGIHVVSGSLDTSIRVWDVETGNCIHTLTGH--------------QSLTSGME 326 (445)
T ss_dssp EEEEEECCCSSCEEEEEE---------CSSEEEEEETTSCEEEEETTTCCEEEEECCC--------------CSCEEEEE
T ss_pred cEeEEecCCCCceEEEEE---------CCCEEEEEeCCCeEEEEECCCCCEEEEEcCC--------------cccEEEEE
Confidence 344555666666666666 3456677777777777777666665555433 33666666
Q ss_pred EeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeec---ccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCc
Q 021036 199 LILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNA---HDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNS 275 (318)
Q Consensus 199 ~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 275 (318)
++ ++++++|+.||.|++| +.++++ .+..+.+ |...|++++|+ +.+|++++.||.|++||+.+++
T Consensus 327 ~~-------~~~l~~~~~dg~i~vw--d~~~~~--~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~ 393 (445)
T 2ovr_B 327 LK-------DNILVSGNADSTVKIW--DIKTGQ--CLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGE 393 (445)
T ss_dssp EE-------TTEEEEEETTSCEEEE--ETTTCC--EEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC
T ss_pred Ee-------CCEEEEEeCCCeEEEE--ECCCCc--EEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCc
Confidence 64 5699999999999999 555655 5566665 88899999996 5799999999999999999876
Q ss_pred eeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 276 LSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
........ ...+|.+.|.+++|+|++.++|+|.
T Consensus 394 ~~~~~~~~---------~~~~~~~~v~~~~~s~~~~~la~~~ 426 (445)
T 2ovr_B 394 FIRNLVTL---------ESGGSGGVVWRIRASNTKLVCAVGS 426 (445)
T ss_dssp EEEEEEEC---------TTGGGTCEEEEEEECSSEEEEEEEC
T ss_pred eeeeeecc---------ccCCCCceEEEEEecCCEEEEEEcc
Confidence 55432110 0123567999999999999999874
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-27 Score=205.71 Aligned_cols=211 Identities=19% Similarity=0.265 Sum_probs=166.4
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeeccc-----------------------ccCCCCc
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPV-----------------------LRLSSKK 72 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~-----------------------~~~~~~~ 72 (318)
+...+++|+.|++|++||+++++++..+.. |... +.++.|++. ..+.+|.
T Consensus 158 dg~~lasgs~Dg~v~iWd~~~~~~~~~~~~----h~~~---v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~ 230 (420)
T 4gga_A 158 EGNYLAVGTSSAEVQLWDVQQQKRLRNMTS----HSAR---VGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHS 230 (420)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEEEECC----CSSC---EEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCS
T ss_pred CCCEEEEEECCCeEEEEEcCCCcEEEEEeC----CCCc---eEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccc
Confidence 456689999999999999999887665543 2222 112333321 1145788
Q ss_pred ccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCC-CCcEEE
Q 021036 73 YPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSN-PQVLLV 151 (318)
Q Consensus 73 ~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~-~~~~l~ 151 (318)
..+..+.++++++++++++.||.|++|+..+++.. ...+.....|...|.+++| ++ ++.+++
T Consensus 231 ~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~----------~~~~~~~~~~~~~V~~~~~-------~p~~~~~la 293 (420)
T 4gga_A 231 QEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG----------WVPLQTFTQHQGAVKAVAW-------CPWQSNVLA 293 (420)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSC----------SCCSEEECCCSSCEEEEEE-------CTTCTTEEE
T ss_pred cceeeeeecCCCCeeeeeeccccceEEeecccccc----------ceeeeeecccCCceeeeee-------CCCcccEEE
Confidence 89999999999999999999999999999876532 2344567789999999999 44 345665
Q ss_pred EE--eCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe--CCCcEEEeeecc
Q 021036 152 TG--SSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK--GSGSFDLWKCDI 227 (318)
Q Consensus 152 s~--~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~--~dg~i~vw~~~~ 227 (318)
++ +.|++|++||+.++++...+..+. .+.++.|+ ++++.+++++ .|+.|++| +.
T Consensus 294 ~~~gs~D~~I~iwd~~t~~~~~~~~~~~---------------~v~~~~~~-----~~~~~lv~~sg~~d~~I~iw--d~ 351 (420)
T 4gga_A 294 TGGGTSDRHIRIWNVCSGACLSAVDAHS---------------QVCSILWS-----PHYKELISGHGFAQNQLVIW--KY 351 (420)
T ss_dssp EEECTTTCEEEEEETTTTEEEEEEECSS---------------CEEEEEEE-----TTTTEEEEEECTTTCCEEEE--ET
T ss_pred EEeecCCCEEEEEeCCccccceeecccc---------------ceeeeeec-----CCCCeEEEEEecCCCEEEEE--EC
Confidence 54 579999999999998877765443 68889998 8888777765 79999999 55
Q ss_pred CCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCC
Q 021036 228 SCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGN 274 (318)
Q Consensus 228 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 274 (318)
.+++ ++.++.+|.+.|++++|+|+|++|+||+.|++|++||+...
T Consensus 352 ~~~~--~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 352 PTMA--KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 396 (420)
T ss_dssp TTCC--EEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred CCCc--EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 6665 78889999999999999999999999999999999998753
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.4e-27 Score=205.03 Aligned_cols=209 Identities=11% Similarity=0.037 Sum_probs=155.7
Q ss_pred CCCCcccccccCCCCCccEE-EEecCCCcEEEEEcc--CCccccccccccCCceeEEeeec--cccccEEEEEeeeecCC
Q 021036 68 LSSKKYPVPQNGSSNWFSIL-AVGGRSGKVSLWRIC--VPKCYSVEDCKVPTTAVLIGLFQ--AHNSWITSISLAVLSSD 142 (318)
Q Consensus 68 ~~~~~~~v~~~~~s~~~~~l-~~g~~dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~p~~~~ 142 (318)
...|...|.++++++++++| ++|+.||.|++|++. +++ .+..+. .|...|.+++|
T Consensus 98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~--------------~~~~~~~~~~~~~v~~~~~------ 157 (450)
T 2vdu_B 98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKN--------------VLKLRKRFCFSKRPNAISI------ 157 (450)
T ss_dssp --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSS--------------CEEEEEEEECSSCEEEEEE------
T ss_pred CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCc--------------eeeeeecccCCCCceEEEE------
Confidence 34566789999999999996 899999999999998 654 334443 56789999999
Q ss_pred CCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCC---ceEEEEEeCCCc
Q 021036 143 SSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPR---LMLLAVGKGSGS 219 (318)
Q Consensus 143 ~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~---~~~l~~~~~dg~ 219 (318)
++++++|++++.||.|++|++.+++..... ......|...|++++|+ |+ +.+|++|+.|+.
T Consensus 158 -sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~----------~~~~~~h~~~v~~~~~s-----p~~~~~~~l~s~~~d~~ 221 (450)
T 2vdu_B 158 -AEDDTTVIIADKFGDVYSIDINSIPEEKFT----------QEPILGHVSMLTDVHLI-----KDSDGHQFIITSDRDEH 221 (450)
T ss_dssp -CTTSSEEEEEETTSEEEEEETTSCCCSSCC----------CCCSEECSSCEEEEEEE-----ECTTSCEEEEEEETTSC
T ss_pred -cCCCCEEEEEeCCCcEEEEecCCccccccc----------ceeeecccCceEEEEEc-----CCCCCCcEEEEEcCCCc
Confidence 899999999999999999999877644300 01123456689999999 88 999999999999
Q ss_pred EEEeeeccCCCeeeEeee-eecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeee-cCCCCCCcc--------
Q 021036 220 FDLWKCDISCNKFDKVGS-YNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVS-IPTNTPGLQ-------- 289 (318)
Q Consensus 220 i~vw~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~-~~~~~~~~~-------- 289 (318)
|++|++ ++++ .+.. +.+|...|.+++|+ ++.+|++++.|++|++||+.++...... .......+.
T Consensus 222 i~vwd~--~~~~--~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (450)
T 2vdu_B 222 IKISHY--PQCF--IVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPP 296 (450)
T ss_dssp EEEEEE--SCTT--CEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC--
T ss_pred EEEEEC--CCCc--eeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccc
Confidence 999954 4544 3444 55899999999999 9999999999999999999987654322 110000000
Q ss_pred --ccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 290 --SCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 290 --~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
...........|.+++|+|++++|+++.
T Consensus 297 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 326 (450)
T 2vdu_B 297 RFQNENNDIIEFAVSKIIKSKNLPFVAFFV 326 (450)
T ss_dssp --------CBCCCEEEEEECSSSSEEEEEE
T ss_pred cccccccccceEEEEEEEEeCCCCEEEEEE
Confidence 0000112345789999999999998863
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-26 Score=197.17 Aligned_cols=228 Identities=16% Similarity=0.089 Sum_probs=176.2
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCC--
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRS-- 93 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~d-- 93 (318)
+...+++++.|+.+++||+.+++.+..+. +... +.+++|+|++ ++|++++.+
T Consensus 85 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~---v~~~~~~~~~------------------~~l~~~~~~~~ 138 (369)
T 3zwl_B 85 FTKYCVTGSADYSIKLWDVSNGQCVATWK-----SPVP---VKRVEFSPCG------------------NYFLAILDNVM 138 (369)
T ss_dssp TSSEEEEEETTTEEEEEETTTCCEEEEEE-----CSSC---EEEEEECTTS------------------SEEEEEECCBT
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEee-----cCCC---eEEEEEccCC------------------CEEEEecCCcc
Confidence 45678999999999999999887655543 2222 4457777777 999999998
Q ss_pred ---CcEEEEEccCCccccccccccCCceeEEeeeccccc--cEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCC-c
Q 021036 94 ---GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNS--WITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYI-Q 167 (318)
Q Consensus 94 ---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~-~ 167 (318)
|.|++|++..+......... .......+..|.. .+.+++| ++++++|++++.||.|++||+++ +
T Consensus 139 ~~~g~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~dg~i~i~d~~~~~ 208 (369)
T 3zwl_B 139 KNPGSINIYEIERDSATHELTKV---SEEPIHKIITHEGLDAATVAGW-------STKGKYIIAGHKDGKISKYDVSNNY 208 (369)
T ss_dssp TBCCEEEEEEEEECTTTCCEEEE---CSSCSEEEECCTTCCCEEEEEE-------CGGGCEEEEEETTSEEEEEETTTTT
T ss_pred CCCCEEEEEEecCCccceeeccc---ccceeeeccCCcCccceeEEEE-------cCCCCEEEEEcCCCEEEEEECCCCc
Confidence 99999999876532110000 0112334555665 9999999 89999999999999999999998 5
Q ss_pred ceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeE
Q 021036 168 ELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTG 247 (318)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~ 247 (318)
+....+..+ ...|.+++|+ |++.+|++++.||.|++| |.++.+ .+..+. +...+..
T Consensus 209 ~~~~~~~~~--------------~~~v~~~~~~-----~~~~~l~~~~~d~~i~v~--d~~~~~--~~~~~~-~~~~~~~ 264 (369)
T 3zwl_B 209 EYVDSIDLH--------------EKSISDMQFS-----PDLTYFITSSRDTNSFLV--DVSTLQ--VLKKYE-TDCPLNT 264 (369)
T ss_dssp EEEEEEECC--------------SSCEEEEEEC-----TTSSEEEEEETTSEEEEE--ETTTCC--EEEEEE-CSSCEEE
T ss_pred EeEEEEecC--------------CCceeEEEEC-----CCCCEEEEecCCceEEEE--ECCCCc--eeeeec-CCCCcee
Confidence 555555443 4489999999 999999999999999999 555655 444554 7788999
Q ss_pred EEEcCCCCEEEEecCCC--------------cEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEE
Q 021036 248 LAWAFDGCCLYSCSQDN--------------FVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVV 313 (318)
Q Consensus 248 ~~~~~~~~~l~s~~~d~--------------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l 313 (318)
++|+|+++++++++.++ .+++||+.++..... +.+|...|.+++|+|++++|
T Consensus 265 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~--------------~~~~~~~v~~~~~s~~~~~l 330 (369)
T 3zwl_B 265 AVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGR--------------VQGHFGPLNTVAISPQGTSY 330 (369)
T ss_dssp EEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEE--------------EECCSSCEEEEEECTTSSEE
T ss_pred EEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhh--------------eecccCcEEEEEECCCCCEE
Confidence 99999999999999888 899999887665432 22355689999999999999
Q ss_pred EEEe
Q 021036 314 AMVQ 317 (318)
Q Consensus 314 ~~~~ 317 (318)
+++.
T Consensus 331 ~s~~ 334 (369)
T 3zwl_B 331 ASGG 334 (369)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 9874
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.95 E-value=6.4e-27 Score=202.35 Aligned_cols=207 Identities=18% Similarity=0.176 Sum_probs=161.5
Q ss_pred Cccc-eEEeeCCCceeEeecCC------CCCCCceecchhccccccccceeeeecccccC-------CCCcccccccCCC
Q 021036 16 NTHP-TVAASKSKGNSITKIPS------NCCLPLITADQYASRSAMLHSLAVAWSPVLRL-------SSKKYPVPQNGSS 81 (318)
Q Consensus 16 ~~~~-~~t~s~d~~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~-------~~~~~~v~~~~~s 81 (318)
+... +++++.|+.+++||+.+ ++.+. |.|...+ ..|...|.+++++
T Consensus 136 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~i~~~~~~ 195 (397)
T 1sq9_A 136 LLSHRLVATDVKGTTYIWKFHPFADESNSLTLN--------------------WSPTLELQGTVESPMTPSQFATSVDIS 195 (397)
T ss_dssp --CEEEEEEETTSCEEEEEEESSSSHHHHTTTC--------------------CCCEEEEEEEECCSSSSCCCCCEEEEC
T ss_pred CCceEEEEEeCCCcEEEEeCCccccccccceee--------------------ccCcceeeeeeccccCCCCCceEEEEC
Confidence 3445 89999999999999987 43322 2222222 3467788888899
Q ss_pred CCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeecc---c---cccEEEEEeeeecCCCCCCCcEEEEEeC
Q 021036 82 NWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQA---H---NSWITSISLAVLSSDSSNPQVLLVTGSS 155 (318)
Q Consensus 82 ~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~---h---~~~v~~~~~~p~~~~~~~~~~~l~s~~~ 155 (318)
+++ +|++++.||.|++||+.++ +.+..+.. | ...|.+++| ++++++|++++.
T Consensus 196 ~~~-~l~~~~~dg~i~i~d~~~~--------------~~~~~~~~~~~h~~~~~~i~~i~~-------~~~~~~l~~~~~ 253 (397)
T 1sq9_A 196 ERG-LIATGFNNGTVQISELSTL--------------RPLYNFESQHSMINNSNSIRSVKF-------SPQGSLLAIAHD 253 (397)
T ss_dssp TTS-EEEEECTTSEEEEEETTTT--------------EEEEEEECCC---CCCCCEEEEEE-------CSSTTEEEEEEE
T ss_pred CCc-eEEEEeCCCcEEEEECCCC--------------ceeEEEeccccccccCCccceEEE-------CCCCCEEEEEec
Confidence 889 9999999999999999874 45667777 8 999999999 889999999999
Q ss_pred C---CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCee
Q 021036 156 D---GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKF 232 (318)
Q Consensus 156 d---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~ 232 (318)
| +.|++||+++++.+..+.....+.... .....|...|.+++|+ |++++|++++.||.|++| +.++.+
T Consensus 254 d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~-----~~~~~l~~~~~dg~i~iw--d~~~~~- 324 (397)
T 1sq9_A 254 SNSFGCITLYETEFGERIGSLSVPTHSSQAS-LGEFAHSSWVMSLSFN-----DSGETLCSAGWDGKLRFW--DVKTKE- 324 (397)
T ss_dssp ETTEEEEEEEETTTCCEEEEECBC---------CCBSBSSCEEEEEEC-----SSSSEEEEEETTSEEEEE--ETTTTE-
T ss_pred CCCCceEEEEECCCCcccceeccCccccccc-ccccccCCcEEEEEEC-----CCCCEEEEEeCCCeEEEE--EcCCCc-
Confidence 9 999999999988777765411000000 0001145689999999 999999999999999999 566665
Q ss_pred eEeeeee------cc---------------cCceeEEEEcCCC----------CEEEEecCCCcEEEEEecCC
Q 021036 233 DKVGSYN------AH---------------DQVVTGLAWAFDG----------CCLYSCSQDNFVRSWIFHGN 274 (318)
Q Consensus 233 ~~~~~~~------~h---------------~~~v~~~~~~~~~----------~~l~s~~~d~~v~iwd~~~~ 274 (318)
.+..+. +| ...|++++|+|++ ++|++++.||.|++|++.++
T Consensus 325 -~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 325 -RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp -EEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred -eeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 666777 77 8999999999998 79999999999999999875
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=8e-27 Score=221.06 Aligned_cols=226 Identities=13% Similarity=0.061 Sum_probs=158.7
Q ss_pred ceEEeeCCCceeEeecCCCCCCCc-eecc--hhccccccccceeeeeccc----------------ccCCCCcccccccC
Q 021036 19 PTVAASKSKGNSITKIPSNCCLPL-ITAD--QYASRSAMLHSLAVAWSPV----------------LRLSSKKYPVPQNG 79 (318)
Q Consensus 19 ~~~t~s~d~~i~iwd~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~w~p~----------------~~~~~~~~~v~~~~ 79 (318)
.+++++.|+++++||+.++..... .... -..+... +.++++++. ..+.+|...+..++
T Consensus 366 ~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~---v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~ 442 (902)
T 2oaj_A 366 LILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPL---ATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKL 442 (902)
T ss_dssp EEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTB---EEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCC
T ss_pred eEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCC---eeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCccc
Confidence 578889999999999987642211 1000 0012121 333444321 12567888899999
Q ss_pred CCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeec-----cccccEEEEEeeeecCCCCCCCcEEEEEe
Q 021036 80 SSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQ-----AHNSWITSISLAVLSSDSSNPQVLLVTGS 154 (318)
Q Consensus 80 ~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~~p~~~~~~~~~~~l~s~~ 154 (318)
+++++++|++|+.||+|++||+.++.... .......+. +|...|++++| ++++++|++|+
T Consensus 443 ~spdg~~laSgs~DgtVrlWd~~~g~~~~--------~~~~~~~l~~~~~~~h~~~V~svaf-------spdg~~LAsgs 507 (902)
T 2oaj_A 443 PAEYGTAFITGHSNGSVRIYDASHGDIQD--------NASFEVNLSRTLNKAKELAVDKISF-------AAETLELAVSI 507 (902)
T ss_dssp CCSEEEEEEEEETTSEEEEEESSCCTTTT--------TBCEEEEHHHHTTCSSSCCEEEEEE-------ETTTTEEEEEE
T ss_pred ccccCcEEEEecCCCcEEEEECCCccccC--------CceEEeechhhcCCCCCCceeEEEe-------cCCCCeEEEEe
Confidence 99999999999999999999999864210 000111122 78999999999 99999999999
Q ss_pred CCCcEEEEECCCcceeee----------ecc-----------------ccc-----ccccceeeeeecccceeEEEEeec
Q 021036 155 SDGSVRIWDGYIQELQKS----------AEA-----------------HCV-----PFSLLKEVVTVNTVPISVLSLILP 202 (318)
Q Consensus 155 ~d~~v~iwd~~~~~~~~~----------~~~-----------------~~~-----~~~~~~~~~~~~~~~v~~l~~~~~ 202 (318)
.||+|+|||+.+++.... +.. ... .+.+ ......|...|++++|+
T Consensus 508 ~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~l~~h~~~V~svafS-- 584 (902)
T 2oaj_A 508 ETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMP-STAVHANKGKTSAINNS-- 584 (902)
T ss_dssp TTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEE-EEEECCCSCSEEEEEEC--
T ss_pred cCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccce-eEEEEcCCCcEEEEEec--
Confidence 999999999987632100 000 000 0000 12345688899999999
Q ss_pred cCCCCceEEEEEeCCCcEEEeeeccCCCeeeE---eeeee-cccCceeEEEEc-----CCC---CEEEEecCCCcEEEEE
Q 021036 203 VQSPRLMLLAVGKGSGSFDLWKCDISCNKFDK---VGSYN-AHDQVVTGLAWA-----FDG---CCLYSCSQDNFVRSWI 270 (318)
Q Consensus 203 ~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~---~~~~~-~h~~~v~~~~~~-----~~~---~~l~s~~~d~~v~iwd 270 (318)
|+| +||+|+.|++|++|| .++..... +..+. +|...|++++|+ ||| .+|++|+.|++|++||
T Consensus 585 ---pdG-~lAsgs~D~tv~lwd--~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd 658 (902)
T 2oaj_A 585 ---NIG-FVGIAYAAGSLMLID--RRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYK 658 (902)
T ss_dssp ---BTS-EEEEEETTSEEEEEE--TTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEE
T ss_pred ---CCc-EEEEEeCCCcEEEEE--CCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEE
Confidence 999 999999999999994 55554211 12343 899999999999 885 7999999999999999
Q ss_pred e
Q 021036 271 F 271 (318)
Q Consensus 271 ~ 271 (318)
+
T Consensus 659 ~ 659 (902)
T 2oaj_A 659 I 659 (902)
T ss_dssp E
T ss_pred E
Confidence 9
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-26 Score=201.65 Aligned_cols=227 Identities=19% Similarity=0.237 Sum_probs=172.3
Q ss_pred ceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeec---------------------ccc-----------
Q 021036 19 PTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWS---------------------PVL----------- 66 (318)
Q Consensus 19 ~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~---------------------p~~----------- 66 (318)
.+++|+.|+++++||+++++++..+.. |... +.+++|+ ...
T Consensus 175 ~l~s~s~dg~i~vwd~~~~~~~~~~~~----h~~~---v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~ 247 (464)
T 3v7d_B 175 ILVSGSTDRTVRVWDIKKGCCTHVFEG----HNST---VRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEH 247 (464)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECC----CSSC---EEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------C
T ss_pred EEEEEeCCCCEEEEECCCCcEEEEECC----CCCc---cEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccC
Confidence 789999999999999998876555432 2222 2223333 211
Q ss_pred -----------------cCCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccc
Q 021036 67 -----------------RLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNS 129 (318)
Q Consensus 67 -----------------~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 129 (318)
.+.+|...|.++ +++++++++|+.||.|++||+.++ +.+..+.+|..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~--------------~~~~~~~~~~~ 311 (464)
T 3v7d_B 248 DYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQM--------------KCLYILSGHTD 311 (464)
T ss_dssp CSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTT--------------EEEEEECCCSS
T ss_pred CcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCC--------------cEEEEecCCCC
Confidence 123455555555 567899999999999999999874 46678889999
Q ss_pred cEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCce
Q 021036 130 WITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLM 209 (318)
Q Consensus 130 ~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~ 209 (318)
.|.+++| ++++++|++|+.||.|++||+++++.+..+..|. ..|.++.++ +.
T Consensus 312 ~v~~~~~-------~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~--------------~~v~~~~~~-------~~ 363 (464)
T 3v7d_B 312 RIYSTIY-------DHERKRCISASMDTTIRIWDLENGELMYTLQGHT--------------ALVGLLRLS-------DK 363 (464)
T ss_dssp CEEEEEE-------ETTTTEEEEEETTSCEEEEETTTTEEEEEECCCS--------------SCEEEEEEC-------SS
T ss_pred CEEEEEE-------cCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC--------------CcEEEEEEc-------CC
Confidence 9999999 8899999999999999999999998887776554 378888886 47
Q ss_pred EEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCcc
Q 021036 210 LLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQ 289 (318)
Q Consensus 210 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~ 289 (318)
+|++++.||.|++|| .++.. ..... .+...+..++|+|++.++++++ |+.|++||+.+++......
T Consensus 364 ~l~s~s~dg~v~vwd--~~~~~--~~~~~-~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~-------- 429 (464)
T 3v7d_B 364 FLVSAAADGSIRGWD--ANDYS--RKFSY-HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANI-------- 429 (464)
T ss_dssp EEEEEETTSEEEEEE--TTTCC--EEEEE-ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCT--------
T ss_pred EEEEEeCCCcEEEEE--CCCCc--eeeee-cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhh--------
Confidence 999999999999994 55544 22232 3666788899999999999998 8999999999987764322
Q ss_pred ccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 290 SCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 290 ~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
..|...|.+++|+ +..+++++
T Consensus 430 -----~~~~~~v~~v~~~-~~~l~~~~ 450 (464)
T 3v7d_B 430 -----LKDADQIWSVNFK-GKTLVAAV 450 (464)
T ss_dssp -----TTTCSEEEEEEEE-TTEEEEEE
T ss_pred -----ccCCCcEEEEEec-CCEEEEEE
Confidence 2245699999998 33444443
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.7e-26 Score=208.39 Aligned_cols=239 Identities=13% Similarity=0.096 Sum_probs=178.8
Q ss_pred CCCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEec
Q 021036 12 MKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGG 91 (318)
Q Consensus 12 ~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~ 91 (318)
+.+.+...+++++.|+.+++||+.+++.+..+.. |......+.+++|+|+. +++|++++
T Consensus 168 ~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~-----------------~~~l~~~~ 226 (615)
T 1pgu_A 168 LKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT----HHKQGSFVRDVEFSPDS-----------------GEFVITVG 226 (615)
T ss_dssp ECSSSSCEEEEEETTTEEEEEETTTBEEEEEECS----SSCTTCCEEEEEECSTT-----------------CCEEEEEE
T ss_pred ECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecc----cCCCCceEEEEEECCCC-----------------CCEEEEEe
Confidence 3333444789999999999999887765444332 22200023446666661 49999999
Q ss_pred CCCcEEEEEccCCccccccccccCCceeEEeee-c---cccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCc
Q 021036 92 RSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLF-Q---AHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQ 167 (318)
Q Consensus 92 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~-~---~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 167 (318)
.||.|++||+.+++ .+..+ . .|...|.+++| + ++++|++++.|+.|++||++++
T Consensus 227 ~dg~i~vwd~~~~~--------------~~~~~~~~~~~~~~~v~~~~~-------~-~~~~l~~~~~d~~i~~wd~~~~ 284 (615)
T 1pgu_A 227 SDRKISCFDGKSGE--------------FLKYIEDDQEPVQGGIFALSW-------L-DSQKFATVGADATIRVWDVTTS 284 (615)
T ss_dssp TTCCEEEEETTTCC--------------EEEECCBTTBCCCSCEEEEEE-------S-SSSEEEEEETTSEEEEEETTTT
T ss_pred CCCeEEEEECCCCC--------------EeEEecccccccCCceEEEEE-------c-CCCEEEEEcCCCcEEEEECCCC
Confidence 99999999998854 55566 5 89999999999 7 8999999999999999999876
Q ss_pred ceeeeecccc---------------------------------------------ccc----------------------
Q 021036 168 ELQKSAEAHC---------------------------------------------VPF---------------------- 180 (318)
Q Consensus 168 ~~~~~~~~~~---------------------------------------------~~~---------------------- 180 (318)
+....+..+. .++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~ 364 (615)
T 1pgu_A 285 KCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSS 364 (615)
T ss_dssp EEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTT
T ss_pred cEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEc
Confidence 5544332220 000
Q ss_pred ----------------------------------cc--------------------------------------------
Q 021036 181 ----------------------------------SL-------------------------------------------- 182 (318)
Q Consensus 181 ----------------------------------~~-------------------------------------------- 182 (318)
..
T Consensus 365 ~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (615)
T 1pgu_A 365 SSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR 444 (615)
T ss_dssp TEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred hhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc
Confidence 00
Q ss_pred ---------------------ce--------------eeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeecc
Q 021036 183 ---------------------LK--------------EVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDI 227 (318)
Q Consensus 183 ---------------------~~--------------~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 227 (318)
.. .....|...|.+++|+ |++++|++++.||.|++| +.
T Consensus 445 ~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~g~~l~~~~~dg~i~iw--~~ 517 (615)
T 1pgu_A 445 LNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISIS-----PSETYIAAGDVMGKILLY--DL 517 (615)
T ss_dssp CSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEEC-----TTSSEEEEEETTSCEEEE--ET
T ss_pred cCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEEC-----CCCCEEEEcCCCCeEEEe--eC
Confidence 00 1112356678899998 999999999999999999 56
Q ss_pred CCCeeeEeeeeec-ccCceeEEEEcC----------CCCEEEEecCCCcEEEEEecCC-ceeeeecCCCCCCccccccCC
Q 021036 228 SCNKFDKVGSYNA-HDQVVTGLAWAF----------DGCCLYSCSQDNFVRSWIFHGN-SLSQVSIPTNTPGLQSCTDLP 295 (318)
Q Consensus 228 ~~~~~~~~~~~~~-h~~~v~~~~~~~----------~~~~l~s~~~d~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~ 295 (318)
.+++ .+..+.+ |...|++++|+| ++++|++++.|+.|++||+.++ .... .+.
T Consensus 518 ~~~~--~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~--------------~~~ 581 (615)
T 1pgu_A 518 QSRE--VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIK--------------ALN 581 (615)
T ss_dssp TTTE--EEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEE--------------ETT
T ss_pred CCCc--ceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceech--------------hhh
Confidence 6666 5667777 999999999999 9999999999999999999875 3322 234
Q ss_pred CcceeeeEEEEcCCCcEEEEEe
Q 021036 296 DAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 296 ~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
+|...|++++|+|+++ |+++.
T Consensus 582 ~h~~~v~~l~~s~~~~-l~s~~ 602 (615)
T 1pgu_A 582 AHKDGVNNLLWETPST-LVSSG 602 (615)
T ss_dssp SSTTCEEEEEEEETTE-EEEEE
T ss_pred cCccceEEEEEcCCCC-eEEec
Confidence 4667999999999999 88774
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.1e-27 Score=218.15 Aligned_cols=200 Identities=18% Similarity=0.213 Sum_probs=161.6
Q ss_pred CCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCC-
Q 021036 68 LSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNP- 146 (318)
Q Consensus 68 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~- 146 (318)
+.+|..+|+++++++++++|++|+.||.|++|++..+. .+....+.+|.++|++++| +++
T Consensus 5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~------------~~~~~~l~~h~~~V~~l~~-------s~~~ 65 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET------------HKLIDTLTGHEGPVWRVDW-------AHPK 65 (753)
T ss_dssp ---CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE------------EEEEEEECCCSSCEEEEEE-------CCTT
T ss_pred cccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC------------CccceeccCCcCceEEEEe-------cCCC
Confidence 45788899999999999999999999999999998543 5677888999999999999 666
Q ss_pred -CcEEEEEeCCCcEEEEECCCcc--eeeeecccccccccceeeeeecccceeEEEEeeccCCCC--ceEEEEEeCCCcEE
Q 021036 147 -QVLLVTGSSDGSVRIWDGYIQE--LQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPR--LMLLAVGKGSGSFD 221 (318)
Q Consensus 147 -~~~l~s~~~d~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~--~~~l~~~~~dg~i~ 221 (318)
+++|++|+.||.|++||+.+++ ....+. .|..+|.+++|+ |+ +..+++|+.||.|+
T Consensus 66 ~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~--------------~h~~~V~~v~~s-----p~~~~~~l~sgs~dg~I~ 126 (753)
T 3jro_A 66 FGTILASCSYDGKVLIWKEENGRWSQIAVHA--------------VHSASVNSVQWA-----PHEYGPLLLVASSDGKVS 126 (753)
T ss_dssp SCSEEEEEETTSCEEEEEEETTEEEEEEEEC--------------CCSSCEEEEEEC-----CGGGCSEEEEEETTSEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCccccccccc--------------CCCCCeEEEEEC-----CCCCCCEEEEEeCCCcEE
Confidence 8999999999999999998875 333333 345589999999 88 99999999999999
Q ss_pred EeeeccCCCeeeEeeeeecccCceeEEEEcC-------------CCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCc
Q 021036 222 LWKCDISCNKFDKVGSYNAHDQVVTGLAWAF-------------DGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGL 288 (318)
Q Consensus 222 vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-------------~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~ 288 (318)
+|++ +.........+.+|...|.+++|+| ++.++++|+.||.|++||++++.......
T Consensus 127 vwdl--~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~------- 197 (753)
T 3jro_A 127 VVEF--KENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE------- 197 (753)
T ss_dssp EEEC--CSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEE-------
T ss_pred EEEe--ecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceee-------
Confidence 9954 4442224456778999999999999 58899999999999999998753221110
Q ss_pred cccccCCCcceeeeEEEEcCC---CcEEEEEe
Q 021036 289 QSCTDLPDAFVSCLGMAVSPG---NLVVAMVQ 317 (318)
Q Consensus 289 ~~~~~~~~h~~~v~~v~~sp~---~~~l~~~~ 317 (318)
..+.+|...|++++|+|+ +.+|++|.
T Consensus 198 ---~~~~~h~~~V~~l~~sp~~~~~~~l~s~s 226 (753)
T 3jro_A 198 ---STLEGHSDWVRDVAWSPTVLLRSYLASVS 226 (753)
T ss_dssp ---EEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred ---eeecCCCCcEEEEEeccCCCCCCEEEEEe
Confidence 123346779999999999 89999874
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-26 Score=224.61 Aligned_cols=204 Identities=20% Similarity=0.280 Sum_probs=163.1
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCc
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGK 95 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~ 95 (318)
+...+++++.|++|++||+.+++.+..+.. |... +.+++|+|.+ ++.++++|+.||.
T Consensus 668 ~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~----~~~~---v~~~~~~~~~----------------~~~~l~sg~~d~~ 724 (1249)
T 3sfz_A 668 DDSYIATCSADKKVKIWDSATGKLVHTYDE----HSEQ---VNCCHFTNKS----------------NHLLLATGSNDFF 724 (1249)
T ss_dssp TSSEEEEEETTSEEEEEETTTCCEEEEEEC----CSSC---EEEEEECSSS----------------SCCEEEEEETTSC
T ss_pred CCCEEEEEeCCCeEEEEECCCCceEEEEcC----CCCc---EEEEEEecCC----------------CceEEEEEeCCCe
Confidence 345689999999999999999876555442 3333 4457777743 2368999999999
Q ss_pred EEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecc
Q 021036 96 VSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEA 175 (318)
Q Consensus 96 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 175 (318)
|++||+.+++ .+..+.+|...|++++| ++++++|++++.||+|++||+.+++....+..
T Consensus 725 v~vwd~~~~~--------------~~~~~~~h~~~v~~~~~-------sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 783 (1249)
T 3sfz_A 725 LKLWDLNQKE--------------CRNTMFGHTNSVNHCRF-------SPDDELLASCSADGTLRLWDVRSANERKSINV 783 (1249)
T ss_dssp EEEEETTSSS--------------EEEEECCCSSCEEEEEE-------CSSTTEEEEEESSSEEEEEEGGGTEEEEEEEC
T ss_pred EEEEECCCcc--------------hhheecCCCCCEEEEEE-------ecCCCEEEEEECCCeEEEEeCCCCcccceecc
Confidence 9999999854 55678899999999999 89999999999999999999998766554432
Q ss_pred ccc------------------cc-----------------------ccceeeeeecccceeEEEEeeccCCCCceEEEEE
Q 021036 176 HCV------------------PF-----------------------SLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVG 214 (318)
Q Consensus 176 ~~~------------------~~-----------------------~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~ 214 (318)
... .+ .........|...+.+++|+ |++.+++++
T Consensus 784 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~s-----p~~~~l~~~ 858 (1249)
T 3sfz_A 784 KRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFS-----PYDHLAVIA 858 (1249)
T ss_dssp CCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEEC-----SSTTEEEEE
T ss_pred cccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEc-----CCCCEEEEE
Confidence 110 00 00112233677889999999 999999999
Q ss_pred eCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEec
Q 021036 215 KGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFH 272 (318)
Q Consensus 215 ~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 272 (318)
+.||.|++| +..++. .+..+.+|...|.+++|+|+|.+|++++.|+.|++||+.
T Consensus 859 ~~dg~v~vw--d~~~~~--~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~ 912 (1249)
T 3sfz_A 859 LSQYCVELW--NIDSRL--KVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK 912 (1249)
T ss_dssp CSSSCEEEE--ETTTTE--EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHH
T ss_pred eCCCeEEEE--EcCCCc--eeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEcc
Confidence 999999999 555665 677888999999999999999999999999999999975
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-26 Score=216.66 Aligned_cols=237 Identities=14% Similarity=0.084 Sum_probs=167.1
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCc
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGK 95 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~ 95 (318)
+...+++|+.|++|++|+..+.+..... .+... +.+++|+| + ++|++++.|++
T Consensus 28 dg~~lAsgs~Dg~I~lw~~~~~~~~~~~-----~~~~~---V~~l~fsp-g------------------~~L~S~s~D~~ 80 (902)
T 2oaj_A 28 TQNLLAIATVTGEVHIYGQQQVEVVIKL-----EDRSA---IKEMRFVK-G------------------IYLVVINAKDT 80 (902)
T ss_dssp TTTEEEEEETTSEEEEECSTTCEEEEEC-----SSCCC---EEEEEEET-T------------------TEEEEEETTCE
T ss_pred CCCEEEEEeCCCEEEEEeCCCcEEEEEc-----CCCCC---EEEEEEcC-C------------------CEEEEEECcCe
Confidence 3456899999999999998765432111 12222 44577777 6 79999999999
Q ss_pred EEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecc
Q 021036 96 VSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEA 175 (318)
Q Consensus 96 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 175 (318)
|++||+++++ .+..+. |...|++++| ++++++|++|+.||+|++||+++++.. .+..
T Consensus 81 v~lWd~~~~~--------------~~~~~~-~~~~V~~v~~-------sp~g~~l~sgs~dg~V~lwd~~~~~~~-~~~i 137 (902)
T 2oaj_A 81 VYVLSLYSQK--------------VLTTVF-VPGKITSIDT-------DASLDWMLIGLQNGSMIVYDIDRDQLS-SFKL 137 (902)
T ss_dssp EEEEETTTCS--------------EEEEEE-CSSCEEEEEC-------CTTCSEEEEEETTSCEEEEETTTTEEE-EEEE
T ss_pred EEEEECCCCc--------------EEEEEc-CCCCEEEEEE-------CCCCCEEEEEcCCCcEEEEECCCCccc-ccee
Confidence 9999999855 344454 6689999999 899999999999999999999987653 1111
Q ss_pred cccccccceeeeeecccceeEEEEeeccCCCC-ceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecc-------------
Q 021036 176 HCVPFSLLKEVVTVNTVPISVLSLILPVQSPR-LMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAH------------- 241 (318)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h------------- 241 (318)
.... ........|..+|.+++|+ |+ +..+++|+.||.| +| |.++++ .+..+..|
T Consensus 138 ~~~~--~~~~~~~~h~~~V~sl~~s-----p~~~~~l~~g~~dg~v-lW--d~~~~~--~~~~~~~~~~~g~~~~~~~~~ 205 (902)
T 2oaj_A 138 DNLQ--KSSFFPAARLSPIVSIQWN-----PRDIGTVLISYEYVTL-TY--SLVENE--IKQSFIYELPPFAPGGDFSEK 205 (902)
T ss_dssp CCHH--HHHTCSSSCCCCCCEEEEE-----TTEEEEEEEECSSCEE-EE--ETTTTE--EEEEECCCBCTTCCCSTTCCC
T ss_pred cccc--ccccccccCCCCeEEEEEc-----cCCCCEEEEEeCCCcE-EE--ECCCCc--eEEEEecccCCcCCCcccccc
Confidence 0000 0001124567799999999 75 5799999999999 99 556665 44455444
Q ss_pred -----cCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeee-c-----CCCCCCccccccCCCcceeeeEEEEc---
Q 021036 242 -----DQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVS-I-----PTNTPGLQSCTDLPDAFVSCLGMAVS--- 307 (318)
Q Consensus 242 -----~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~-~-----~~~~~~~~~~~~~~~h~~~v~~v~~s--- 307 (318)
...|++++|+|+|.+|++++.|++|++||+++++..... . +....... .....|...|++++|+
T Consensus 206 ~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~--~~~~~~~~~V~~v~w~~~~ 283 (902)
T 2oaj_A 206 TNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYI--RDSSTNAAKISKVYWMCEN 283 (902)
T ss_dssp TTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCC--CCCSSCCCEEEEEEEEECS
T ss_pred cccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCC--CCCccccCCeeEEEEEecC
Confidence 577999999999999999999999999999887654321 1 11000000 0000255689999995
Q ss_pred -CCC-cEEEEE
Q 021036 308 -PGN-LVVAMV 316 (318)
Q Consensus 308 -p~~-~~l~~~ 316 (318)
|++ .+|++|
T Consensus 284 ~pd~~~ll~sg 294 (902)
T 2oaj_A 284 NPEYTSLLISH 294 (902)
T ss_dssp STTEEEEEEEE
T ss_pred CCCCCEEEEeC
Confidence 543 567766
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-26 Score=193.58 Aligned_cols=207 Identities=14% Similarity=0.109 Sum_probs=157.2
Q ss_pred CCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCC--
Q 021036 68 LSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSN-- 145 (318)
Q Consensus 68 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~-- 145 (318)
+.+|..+|+++++++++++|++|+.||.|++|++.++... .+....+.+|...|.+++| ++
T Consensus 7 ~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~----------~~~~~~~~~~~~~v~~~~~-------~~~~ 69 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSN----------WELSDSWRAHDSSIVAIDW-------ASPE 69 (351)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCC----------EEEEEEEECCSSCEEEEEE-------CCGG
T ss_pred CcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCc----------ceecceeccCCCcEEEEEE-------cCCC
Confidence 4567788888888888899999999999999999875421 3466778899999999999 66
Q ss_pred CCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCC--ceEEEEEeCCCcEEEe
Q 021036 146 PQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPR--LMLLAVGKGSGSFDLW 223 (318)
Q Consensus 146 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~--~~~l~~~~~dg~i~vw 223 (318)
++++|++++.||.|++||++.++........ . .......|...|.+++|+ |+ +.+|++++.||.|++|
T Consensus 70 d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~----~-~~~~~~~~~~~v~~~~~~-----~~~~~~~l~~~~~dg~v~iw 139 (351)
T 3f3f_A 70 YGRIIASASYDKTVKLWEEDPDQEECSGRRW----N-KLCTLNDSKGSLYSVKFA-----PAHLGLKLACLGNDGILRLY 139 (351)
T ss_dssp GCSEEEEEETTSCEEEEEECTTSCTTSSCSE----E-EEEEECCCSSCEEEEEEC-----CGGGCSEEEEEETTCEEEEE
T ss_pred CCCEEEEEcCCCeEEEEecCCCcccccccCc----c-eeeeecccCCceeEEEEc-----CCCCCcEEEEecCCCcEEEe
Confidence 5899999999999999999876421100000 0 001123456689999999 88 9999999999999999
Q ss_pred eeccCCCeeeEeeee-------------ecccCceeEEEEcCC---CCEEEEecCCCcEEEEEecCCceeeeecCCCCCC
Q 021036 224 KCDISCNKFDKVGSY-------------NAHDQVVTGLAWAFD---GCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPG 287 (318)
Q Consensus 224 ~~~~~~~~~~~~~~~-------------~~h~~~v~~~~~~~~---~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~ 287 (318)
|+ ++.+ .+..+ ..|...+.+++|+|+ +.++++++.|+.+.+|+...+....+.
T Consensus 140 d~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------- 208 (351)
T 3f3f_A 140 DA--LEPS--DLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAA------- 208 (351)
T ss_dssp EC--SSTT--CTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEE-------
T ss_pred cC--CChH--HhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeee-------
Confidence 54 3332 11111 257788999999997 889999999999988887766543222
Q ss_pred ccccccCCCcceeeeEEEEcCCC----cEEEEEe
Q 021036 288 LQSCTDLPDAFVSCLGMAVSPGN----LVVAMVQ 317 (318)
Q Consensus 288 ~~~~~~~~~h~~~v~~v~~sp~~----~~l~~~~ 317 (318)
.+.+|...|.+++|+|++ ++|++|.
T Consensus 209 -----~~~~h~~~i~~~~~~p~~~~~~~~l~s~~ 237 (351)
T 3f3f_A 209 -----KLPGHKSLIRSISWAPSIGRWYQLIATGC 237 (351)
T ss_dssp -----ECCCCCSCEEEEEECCCSSCSSEEEEEEE
T ss_pred -----ecCCCCcceeEEEECCCCCCcceEEEEEc
Confidence 233466799999999998 8898874
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-26 Score=200.97 Aligned_cols=246 Identities=14% Similarity=0.268 Sum_probs=183.3
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhcc-----ccccc-----cceeeeecccc-----cCCCCcccccccCC
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYAS-----RSAML-----HSLAVAWSPVL-----RLSSKKYPVPQNGS 80 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~-----~~~~~~w~p~~-----~~~~~~~~v~~~~~ 80 (318)
+...+++|+.|++|++||+.+++....+..+.... .+..+ ......|+... .+..|..+|.++.+
T Consensus 142 d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~ 221 (435)
T 1p22_A 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF 221 (435)
T ss_dssp CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEEC
T ss_pred CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEE
Confidence 57789999999999999999887766655432111 11111 11234565432 25578889999999
Q ss_pred CCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEE
Q 021036 81 SNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVR 160 (318)
Q Consensus 81 s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~ 160 (318)
++ +++++|+.||.|++||+.+++. ......+.+|...|.+++| ++++|++|+.||.|+
T Consensus 222 ~~--~~l~s~s~dg~i~vwd~~~~~~-----------~~~~~~~~~~~~~v~~~~~---------~~~~l~s~~~dg~i~ 279 (435)
T 1p22_A 222 NN--GMMVTCSKDRSIAVWDMASPTD-----------ITLRRVLVGHRAAVNVVDF---------DDKYIVSASGDRTIK 279 (435)
T ss_dssp CT--TEEEEEETTSCEEEEECSSSSC-----------CEEEEEECCCSSCEEEEEE---------ETTEEEEEETTSEEE
T ss_pred cC--CEEEEeeCCCcEEEEeCCCCCC-----------ceeeeEecCCCCcEEEEEe---------CCCEEEEEeCCCeEE
Confidence 74 6999999999999999988653 2234667899999999998 467899999999999
Q ss_pred EEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeec
Q 021036 161 IWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNA 240 (318)
Q Consensus 161 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 240 (318)
+||+++++.+..+..+. ..|.++.++ +.++++|+.||.|++| |.++++ .+..+.+
T Consensus 280 vwd~~~~~~~~~~~~~~--------------~~v~~~~~~-------~~~l~~g~~dg~i~iw--d~~~~~--~~~~~~~ 334 (435)
T 1p22_A 280 VWNTSTCEFVRTLNGHK--------------RGIACLQYR-------DRLVVSGSSDNTIRLW--DIECGA--CLRVLEG 334 (435)
T ss_dssp EEETTTCCEEEEEECCS--------------SCEEEEEEE-------TTEEEEEETTSCEEEE--ETTTCC--EEEEECC
T ss_pred EEECCcCcEEEEEcCCC--------------CcEEEEEeC-------CCEEEEEeCCCeEEEE--ECCCCC--EEEEEeC
Confidence 99999998887766544 378888775 5799999999999999 566665 6778889
Q ss_pred ccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 241 HDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 241 h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
|...|.+++| ++.+|++|+.||.|++||+.++........ ......+.+|.+.|.+++| ++.+|++|.
T Consensus 335 h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-----~~~~~~~~~h~~~v~~l~~--~~~~l~s~s 402 (435)
T 1p22_A 335 HEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAG-----TLCLRTLVEHSGRVFRLQF--DEFQIVSSS 402 (435)
T ss_dssp CSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTT-----TTEEEEECCCSSCCCCEEE--CSSCEEECC
T ss_pred CcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCcccccc-----chheeeccCCCCCeEEEEe--CCCEEEEEe
Confidence 9999999998 688999999999999999976431100000 0011233457779999999 677787763
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-26 Score=192.84 Aligned_cols=217 Identities=18% Similarity=0.195 Sum_probs=160.3
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhcc-----cccccc-----ceeeeeccc------ccCCCCcccccccC
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYAS-----RSAMLH-----SLAVAWSPV------LRLSSKKYPVPQNG 79 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~~-----~~~~~w~p~------~~~~~~~~~v~~~~ 79 (318)
+...+++|+.|++|++||+++++++..+..+.... .+..+. .....|... ..+.+|...+..+.
T Consensus 78 ~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (318)
T 4ggc_A 78 EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLR 157 (318)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEE
T ss_pred CCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEE
Confidence 34568999999999999999988766654322110 000000 001112111 12456888899999
Q ss_pred CCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCC-cE--EEEEeCC
Q 021036 80 SSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQ-VL--LVTGSSD 156 (318)
Q Consensus 80 ~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~-~~--l~s~~~d 156 (318)
+++++++|++++.||.|++||+.+++.. .........|...|.++.+ .+.+ .. +++++.+
T Consensus 158 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~----------~~~~~~~~~~~~~v~~~~~-------~~~~~~~~~~~~~~~~ 220 (318)
T 4ggc_A 158 WAPDGRHLASGGNDNLVNVWPSAPGEGG----------WVPLQTFTQHQGAVKAVAW-------CPWQSNVLATGGGTSD 220 (318)
T ss_dssp ECTTSSEEEEEETTSCEEEEESSCBTTB----------SCCSEEECCCCSCEEEEEE-------CTTSTTEEEEEECTTT
T ss_pred EcCCCCEEEEEecCcceeEEECCCCccc----------ccceeeecccCCceEEEEe-------cCCCCcEEEEEecCCC
Confidence 9999999999999999999999876532 2234455678889999999 4443 33 3466788
Q ss_pred CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe--CCCcEEEeeeccCCCeeeE
Q 021036 157 GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK--GSGSFDLWKCDISCNKFDK 234 (318)
Q Consensus 157 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~--~dg~i~vw~~~~~~~~~~~ 234 (318)
++|++||........... +...+..+.++ +++..+++++ .|+.|++| |.++++ +
T Consensus 221 ~~i~lwd~~~~~~~~~~~---------------~~~~v~~~~~~-----~~~~~~~~~sg~~d~~i~iw--d~~~~~--~ 276 (318)
T 4ggc_A 221 RHIRIWNVCSGACLSAVD---------------AHSQVCSILWS-----PHYKELISGHGFAQNQLVIW--KYPTMA--K 276 (318)
T ss_dssp CEEEEEETTTCCEEEEEE---------------CSSCEEEEEEE-----TTTTEEEEEECTTTCCEEEE--ETTTCC--E
T ss_pred CEEEEEeccccccccccc---------------ceeeeeeeeec-----ccccceEEEEEcCCCEEEEE--ECCCCc--E
Confidence 999999998876655433 23378889998 7777766654 79999999 566666 7
Q ss_pred eeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecC
Q 021036 235 VGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 235 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 273 (318)
+.++.+|.+.|++++|+|+|++|++|+.||+|+|||+..
T Consensus 277 ~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 277 VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp EEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred EEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 888999999999999999999999999999999999864
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=7.9e-26 Score=198.25 Aligned_cols=185 Identities=16% Similarity=0.215 Sum_probs=150.5
Q ss_pred CCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCC
Q 021036 68 LSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQ 147 (318)
Q Consensus 68 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~ 147 (318)
+.+|..+|.++.+ ++++|++|+.||.|++||+.+++ .+..+.+|...|.+++| + +
T Consensus 169 ~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~--------------~~~~~~~h~~~v~~l~~-------~--~ 223 (435)
T 1p22_A 169 LTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE--------------MLNTLIHHCEAVLHLRF-------N--N 223 (435)
T ss_dssp ECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC--------------EEEEECCCCSCEEEEEC-------C--T
T ss_pred EcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCc--------------EEEEEcCCCCcEEEEEE-------c--C
Confidence 5678899999998 67899999999999999999854 56778899999999999 4 3
Q ss_pred cEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeecc
Q 021036 148 VLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDI 227 (318)
Q Consensus 148 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 227 (318)
.+|++|+.||.|++||+.+++..... .....|...|.++++. ++++++|+.||.|++| |.
T Consensus 224 ~~l~s~s~dg~i~vwd~~~~~~~~~~-----------~~~~~~~~~v~~~~~~-------~~~l~s~~~dg~i~vw--d~ 283 (435)
T 1p22_A 224 GMMVTCSKDRSIAVWDMASPTDITLR-----------RVLVGHRAAVNVVDFD-------DKYIVSASGDRTIKVW--NT 283 (435)
T ss_dssp TEEEEEETTSCEEEEECSSSSCCEEE-----------EEECCCSSCEEEEEEE-------TTEEEEEETTSEEEEE--ET
T ss_pred CEEEEeeCCCcEEEEeCCCCCCceee-----------eEecCCCCcEEEEEeC-------CCEEEEEeCCCeEEEE--EC
Confidence 58999999999999999987654211 1123455588888875 6799999999999999 56
Q ss_pred CCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEc
Q 021036 228 SCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVS 307 (318)
Q Consensus 228 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s 307 (318)
++++ .+..+.+|...|.++.|+ +.++++|+.||.|++||++++.... .+.+|...|.+++|
T Consensus 284 ~~~~--~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~--------------~~~~h~~~v~~~~~- 344 (435)
T 1p22_A 284 STCE--FVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLR--------------VLEGHEELVRCIRF- 344 (435)
T ss_dssp TTCC--EEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEE--------------EECCCSSCEEEEEC-
T ss_pred CcCc--EEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEE--------------EEeCCcCcEEEEEe-
Confidence 6665 677888999999999984 6799999999999999999876543 22335568999999
Q ss_pred CCCcEEEEEe
Q 021036 308 PGNLVVAMVQ 317 (318)
Q Consensus 308 p~~~~l~~~~ 317 (318)
++.+|++|.
T Consensus 345 -~~~~l~sg~ 353 (435)
T 1p22_A 345 -DNKRIVSGA 353 (435)
T ss_dssp -CSSEEEEEE
T ss_pred -cCCEEEEEe
Confidence 788888874
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.3e-26 Score=196.31 Aligned_cols=201 Identities=19% Similarity=0.261 Sum_probs=164.7
Q ss_pred CcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEE
Q 021036 71 KKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLL 150 (318)
Q Consensus 71 ~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l 150 (318)
|..+|.++++++++++|++|+.||.|++|+. + .+.+..+..|...|.+++| ++++++|
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~-~--------------~~~~~~~~~~~~~v~~~~~-------~~~~~~l 164 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNK-T--------------GALLNVLNFHRAPIVSVKW-------NKDGTHI 164 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEET-T--------------SCEEEEECCCCSCEEEEEE-------CTTSSEE
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEeC-C--------------CCeeeeccCCCccEEEEEE-------CCCCCEE
Confidence 5779999999999999999999999999994 3 3466778899999999999 8999999
Q ss_pred EEEeCCCcEEEEECCCcceeeeecccccc---------------cccc---------------------------eeeee
Q 021036 151 VTGSSDGSVRIWDGYIQELQKSAEAHCVP---------------FSLL---------------------------KEVVT 188 (318)
Q Consensus 151 ~s~~~d~~v~iwd~~~~~~~~~~~~~~~~---------------~~~~---------------------------~~~~~ 188 (318)
++++.|+.|++||+.+++....+..+... ...+ .....
T Consensus 165 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~ 244 (425)
T 1r5m_A 165 ISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLI 244 (425)
T ss_dssp EEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEEC
T ss_pred EEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeec
Confidence 99999999999999988877766544332 1000 01234
Q ss_pred ecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEE
Q 021036 189 VNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRS 268 (318)
Q Consensus 189 ~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~i 268 (318)
.|...|.+++|+ |++++|++++.||.|++| +.+..+ .+..+.+|...|.+++|+|++ ++++++.|+.|++
T Consensus 245 ~~~~~i~~~~~~-----~~~~~l~~~~~d~~i~i~--d~~~~~--~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i 314 (425)
T 1r5m_A 245 GHHGPISVLEFN-----DTNKLLLSASDDGTLRIW--HGGNGN--SQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRL 314 (425)
T ss_dssp CCSSCEEEEEEE-----TTTTEEEEEETTSCEEEE--CSSSBS--CSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEE
T ss_pred cCCCceEEEEEC-----CCCCEEEEEcCCCEEEEE--ECCCCc--cceEecCCCccEEEEEECCCC-EEEEEeCCCcEEE
Confidence 677899999999 999999999999999999 555554 566777899999999999999 9999999999999
Q ss_pred EEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 269 WIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 269 wd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
||++++....... .|...|.+++|+|++++|+++.
T Consensus 315 ~d~~~~~~~~~~~--------------~~~~~i~~~~~s~~~~~l~~~~ 349 (425)
T 1r5m_A 315 WSLKQNTLLALSI--------------VDGVPIFAGRISQDGQKYAVAF 349 (425)
T ss_dssp EETTTTEEEEEEE--------------CTTCCEEEEEECTTSSEEEEEE
T ss_pred EECCCCcEeEecc--------------cCCccEEEEEEcCCCCEEEEEE
Confidence 9998876543221 2345899999999999999874
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-26 Score=202.09 Aligned_cols=222 Identities=12% Similarity=0.143 Sum_probs=150.5
Q ss_pred cccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeecccc------------ccEEEEEeeeecC
Q 021036 74 PVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHN------------SWITSISLAVLSS 141 (318)
Q Consensus 74 ~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~v~~~~~~p~~~ 141 (318)
+|.+++|++++++||+|+.||.|+||++.+++.... ......+....+.+|. ..|++++|
T Consensus 30 ~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~---~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~----- 101 (447)
T 3dw8_B 30 IISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQS---HSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRW----- 101 (447)
T ss_dssp SEEEEEECSSSSEEEEEETTSEEEEEEECC-----C---CCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEE-----
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCc---ccccceeEecccccccccccccccccccCceEEEEE-----
Confidence 333444444449999999999999999987542100 0001123567788998 88999999
Q ss_pred CCCCCC--cEEEEEeCCCcEEEEECCCcceeeee---ccccc-----------c------------cccceeeeeecccc
Q 021036 142 DSSNPQ--VLLVTGSSDGSVRIWDGYIQELQKSA---EAHCV-----------P------------FSLLKEVVTVNTVP 193 (318)
Q Consensus 142 ~~~~~~--~~l~s~~~d~~v~iwd~~~~~~~~~~---~~~~~-----------~------------~~~~~~~~~~~~~~ 193 (318)
++++ .+|++++.|++|++||+..++..... ..+.. . ..........|...
T Consensus 102 --~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 179 (447)
T 3dw8_B 102 --LPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYH 179 (447)
T ss_dssp --CCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSC
T ss_pred --cCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcc
Confidence 7777 79999999999999999875432110 00000 0 00011223568889
Q ss_pred eeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEee-------eeecccCceeEEEEcCCC-CEEEEecCCCc
Q 021036 194 ISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVG-------SYNAHDQVVTGLAWAFDG-CCLYSCSQDNF 265 (318)
Q Consensus 194 v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-------~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~ 265 (318)
|.+++|+ |++++|++| .|+.|++||+ +... ..+. .+.+|...|++++|+|++ .+|++++.||.
T Consensus 180 v~~~~~~-----~~~~~l~s~-~d~~i~iwd~--~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~ 250 (447)
T 3dw8_B 180 INSISIN-----SDYETYLSA-DDLRINLWHL--EITD-RSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGT 250 (447)
T ss_dssp CCEEEEC-----TTSSEEEEE-CSSEEEEEET--TEEE-EEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSC
T ss_pred eEEEEEc-----CCCCEEEEe-CCCeEEEEEC--CCCC-ceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCe
Confidence 9999999 999999999 7999999954 4222 1222 356899999999999998 89999999999
Q ss_pred EEEEEecCCce-----eeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 266 VRSWIFHGNSL-----SQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 266 v~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
|++||++++.. ..+..+.... ....+.+|...|.+++|+|+|++|+++.
T Consensus 251 i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 304 (447)
T 3dw8_B 251 IRLCDMRASALCDRHSKLFEEPEDPS---NRSFFSEIISSISDVKFSHSGRYMMTRD 304 (447)
T ss_dssp EEEEETTTCSSSCTTCEEECCC--------CCHHHHHTTCEEEEEECTTSSEEEEEE
T ss_pred EEEEECcCCccccceeeEeccCCCcc---ccccccccCceEEEEEECCCCCEEEEee
Confidence 99999988664 2222221100 0001123445899999999999999874
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.2e-26 Score=192.35 Aligned_cols=208 Identities=16% Similarity=0.197 Sum_probs=154.1
Q ss_pred CCccceEEeeCCCceeEeecCCCC-CCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCC
Q 021036 15 SNTHPTVAASKSKGNSITKIPSNC-CLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRS 93 (318)
Q Consensus 15 ~~~~~~~t~s~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~d 93 (318)
.+...+++++.|+.+++||+.+++ ....+.......... +.++.|.+ ++++++++|++++.|
T Consensus 127 ~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~---v~~~~~~~--------------~~~~~~~~l~~~~~d 189 (357)
T 3i2n_A 127 EGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRD---CWTVAFGN--------------AYNQEERVVCAGYDN 189 (357)
T ss_dssp -CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCC---EEEEEEEC--------------CCC-CCCEEEEEETT
T ss_pred CCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCc---eEEEEEEe--------------ccCCCCCEEEEEccC
Confidence 345578999999999999999876 333333211111111 22344211 133444999999999
Q ss_pred CcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCC---CCcEEEEEeCCCcEEEEECCCccee
Q 021036 94 GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSN---PQVLLVTGSSDGSVRIWDGYIQELQ 170 (318)
Q Consensus 94 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~---~~~~l~s~~~d~~v~iwd~~~~~~~ 170 (318)
|.|++||+++++ . .....|...|.+++| ++ ++.+|++++.||.|++||+++++..
T Consensus 190 ~~i~i~d~~~~~--------------~-~~~~~~~~~v~~~~~-------~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 247 (357)
T 3i2n_A 190 GDIKLFDLRNMA--------------L-RWETNIKNGVCSLEF-------DRKDISMNKLVATSLEGKFHVFDMRTQHPT 247 (357)
T ss_dssp SEEEEEETTTTE--------------E-EEEEECSSCEEEEEE-------SCSSSSCCEEEEEESTTEEEEEEEEEEETT
T ss_pred CeEEEEECccCc--------------e-eeecCCCCceEEEEc-------CCCCCCCCEEEEECCCCeEEEEeCcCCCcc
Confidence 999999999854 2 234678899999999 77 8899999999999999999877655
Q ss_pred eeecccccccccceeeeeecccceeEEEEeeccCCCCce-EEEEEeCCCcEEEeeeccCCC---------------eeeE
Q 021036 171 KSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLM-LLAVGKGSGSFDLWKCDISCN---------------KFDK 234 (318)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~---------------~~~~ 234 (318)
..+... ....|...|++++|+ |++. +|++++.||.|++|+++.... ..+.
T Consensus 248 ~~~~~~---------~~~~~~~~v~~~~~~-----~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~ 313 (357)
T 3i2n_A 248 KGFASV---------SEKAHKSTVWQVRHL-----PQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSL 313 (357)
T ss_dssp TEEEEE---------EEECCSSCEEEEEEE-----TTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEE
T ss_pred cceeee---------ccCCCcCCEEEEEEC-----CCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccce
Confidence 443311 113566799999999 8988 899999999999997653221 2246
Q ss_pred eeeeecccCceeEEEEcCCCCEEE-EecCCCcEEEEEecCCc
Q 021036 235 VGSYNAHDQVVTGLAWAFDGCCLY-SCSQDNFVRSWIFHGNS 275 (318)
Q Consensus 235 ~~~~~~h~~~v~~~~~~~~~~~l~-s~~~d~~v~iwd~~~~~ 275 (318)
+..+.+|...|++++|+|++++|+ +++.|+.|++||+.+..
T Consensus 314 ~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 314 LQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp EEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred eeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 778889999999999999999888 89999999999997643
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-25 Score=194.75 Aligned_cols=218 Identities=14% Similarity=0.138 Sum_probs=153.8
Q ss_pred CcccccccCCCC-CccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCC-CCc
Q 021036 71 KKYPVPQNGSSN-WFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSN-PQV 148 (318)
Q Consensus 71 ~~~~v~~~~~s~-~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~-~~~ 148 (318)
|..+|.++++++ ++++|++|+.||.|++|++.+++.......... .........+|...|.+++| ++ ++.
T Consensus 42 h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~-------~~~~~~ 113 (408)
T 4a11_B 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAV-CSIGRDHPDVHRYSVETVQW-------YPHDTG 113 (408)
T ss_dssp CSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEE-EEECTTCTTCCSSCEEEEEE-------CTTCTT
T ss_pred cCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecccc-ccccccccccCCCcEEEEEE-------ccCCCc
Confidence 334444444444 459999999999999999998654311000000 00000011359999999999 66 778
Q ss_pred EEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccC
Q 021036 149 LLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDIS 228 (318)
Q Consensus 149 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~ 228 (318)
+|++++.|+.|++||+.+++....+.. ...+.++.+.. ..+++.++++++.+|.|++| +.+
T Consensus 114 ~l~s~~~d~~i~iwd~~~~~~~~~~~~---------------~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~--d~~ 174 (408)
T 4a11_B 114 MFTSSSFDKTLKVWDTNTLQTADVFNF---------------EETVYSHHMSP--VSTKHCLVAVGTRGPKVQLC--DLK 174 (408)
T ss_dssp CEEEEETTSEEEEEETTTTEEEEEEEC---------------SSCEEEEEECS--SCSSCCEEEEEESSSSEEEE--ESS
T ss_pred EEEEEeCCCeEEEeeCCCCccceeccC---------------CCceeeeEeec--CCCCCcEEEEEcCCCeEEEE--eCC
Confidence 999999999999999999877766542 23677888871 01245699999999999999 455
Q ss_pred CCeeeEeeeeecccCceeEEEEcCCCC-EEEEecCCCcEEEEEecCCcee--eeecCCCCCCccccccCCCcceeeeEEE
Q 021036 229 CNKFDKVGSYNAHDQVVTGLAWAFDGC-CLYSCSQDNFVRSWIFHGNSLS--QVSIPTNTPGLQSCTDLPDAFVSCLGMA 305 (318)
Q Consensus 229 ~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 305 (318)
+++ .+..+.+|...|.+++|+|++. +|++++.||.|++||++.+... .+..+..............|...|.+++
T Consensus 175 ~~~--~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 252 (408)
T 4a11_B 175 SGS--CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLC 252 (408)
T ss_dssp SSC--CCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEE
T ss_pred Ccc--eeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEE
Confidence 555 5667888999999999999998 5899999999999999875422 2211111111112223457889999999
Q ss_pred EcCCCcEEEEEe
Q 021036 306 VSPGNLVVAMVQ 317 (318)
Q Consensus 306 ~sp~~~~l~~~~ 317 (318)
|+|++++|+++.
T Consensus 253 ~~~~~~~l~~~~ 264 (408)
T 4a11_B 253 FTSDGLHLLTVG 264 (408)
T ss_dssp ECTTSSEEEEEE
T ss_pred EcCCCCEEEEec
Confidence 999999999874
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-25 Score=204.50 Aligned_cols=224 Identities=15% Similarity=0.075 Sum_probs=169.0
Q ss_pred ceEEeeCCCceeEeecCCC----CCCCceecchhccccccccceeeeecccccCCCCccc-ccccCCCC--CccEEEEec
Q 021036 19 PTVAASKSKGNSITKIPSN----CCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYP-VPQNGSSN--WFSILAVGG 91 (318)
Q Consensus 19 ~~~t~s~d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~-v~~~~~s~--~~~~l~~g~ 91 (318)
.+++++ ++.+++||+.++ +....+ .+|..+ |.+++++| ++++|++|+
T Consensus 32 ~l~~~~-~~~v~v~~~~~~~~~~~~~~~~-------------------------~~h~~~~v~~~~~sp~~~~~~l~s~~ 85 (615)
T 1pgu_A 32 AIAYPC-GKSAFVRCLDDGDSKVPPVVQF-------------------------TGHGSSVVTTVKFSPIKGSQYLCSGD 85 (615)
T ss_dssp EEEEEE-TTEEEEEECCSSCCSSCSEEEE-------------------------CTTTTSCEEEEEECSSTTCCEEEEEE
T ss_pred EEEEec-CCeEEEEECCCCCCccccceEE-------------------------ecCCCceEEEEEECcCCCCCEEEEec
Confidence 355555 889999999876 332222 223333 44444444 459999999
Q ss_pred CCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCC----CcEEEEECCCc
Q 021036 92 RSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSD----GSVRIWDGYIQ 167 (318)
Q Consensus 92 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d----~~v~iwd~~~~ 167 (318)
.||.|++|++.++.... ....+....+..|...|.+++| ++++++|++++.+ +.|++|| .+
T Consensus 86 ~dg~v~vw~~~~~~~~~------~~~~~~~~~~~~~~~~v~~~~~-------s~~~~~l~~~~~~~~~~~~v~~~d--~~ 150 (615)
T 1pgu_A 86 ESGKVIVWGWTFDKESN------SVEVNVKSEFQVLAGPISDISW-------DFEGRRLCVVGEGRDNFGVFISWD--SG 150 (615)
T ss_dssp TTSEEEEEEEEEEGGGT------EEEEEEEEEEECCSSCEEEEEE-------CTTSSEEEEEECCSSCSEEEEETT--TC
T ss_pred CCCEEEEEeCCCCcccc------cccccccchhhcccccEEEEEE-------eCCCCEEEEeccCCCCccEEEEEE--CC
Confidence 99999999997541000 0003566778889999999999 8999999999988 6888888 45
Q ss_pred ceeeeecccccccccceeeeeecccceeEEEEeeccCCCCce-EEEEEeCCCcEEEeeeccCCCeeeEeeeeecccC---
Q 021036 168 ELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLM-LLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQ--- 243 (318)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~--- 243 (318)
+....+.. |...|.+++|+ |++. ++++++.|+.|++| +....+ .+..+.+|..
T Consensus 151 ~~~~~~~~--------------~~~~v~~~~~~-----~~~~~~l~~~~~d~~v~vw--d~~~~~--~~~~~~~~~~~~~ 207 (615)
T 1pgu_A 151 NSLGEVSG--------------HSQRINACHLK-----QSRPMRSMTVGDDGSVVFY--QGPPFK--FSASDRTHHKQGS 207 (615)
T ss_dssp CEEEECCS--------------CSSCEEEEEEC-----SSSSCEEEEEETTTEEEEE--ETTTBE--EEEEECSSSCTTC
T ss_pred Ccceeeec--------------CCccEEEEEEC-----CCCCcEEEEEeCCCcEEEE--eCCCcc--eeeeecccCCCCc
Confidence 55555544 34489999999 8887 89999999999999 555655 6777888998
Q ss_pred ceeEEEEcCC-CCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 244 VVTGLAWAFD-GCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 244 ~v~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
.|.+++|+|+ +++|++++.|+.|++||+.+++........ ...|...|.+++|+ ++++|+++.
T Consensus 208 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----------~~~~~~~v~~~~~~-~~~~l~~~~ 271 (615)
T 1pgu_A 208 FVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDD----------QEPVQGGIFALSWL-DSQKFATVG 271 (615)
T ss_dssp CEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBT----------TBCCCSCEEEEEES-SSSEEEEEE
T ss_pred eEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEeccc----------ccccCCceEEEEEc-CCCEEEEEc
Confidence 9999999999 999999999999999999887655432110 00355699999999 999999874
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=6e-26 Score=192.82 Aligned_cols=198 Identities=8% Similarity=-0.020 Sum_probs=138.9
Q ss_pred eEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCC--CccEEEEecCCCcEE
Q 021036 20 TVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSN--WFSILAVGGRSGKVS 97 (318)
Q Consensus 20 ~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~--~~~~l~~g~~dg~i~ 97 (318)
+++++.|+++++|+.........+.. ... +. .....|..+|.++++++ ++++|++|+.||.|+
T Consensus 88 ~~s~s~D~~i~~w~~~~~~~~~~~~~------~~~-----~~----~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~ 152 (343)
T 3lrv_A 88 IISRGPCNRLLLLYPGNQITILDSKT------NKV-----LR----EIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIG 152 (343)
T ss_dssp EEEECSTTEEEEEETTTEEEEEETTT------CCE-----EE----EEECCCSSCEEEEECCC---CCEEEEEETTCCEE
T ss_pred eEEecCCCeEEEEEccCceEEeecCC------cce-----eE----EeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEE
Confidence 89999999999998764211000000 000 00 00112334556666666 669999999999999
Q ss_pred EEEccCCccccccccccCCceeEEeee-ccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCccee-eeecc
Q 021036 98 LWRICVPKCYSVEDCKVPTTAVLIGLF-QAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQ-KSAEA 175 (318)
Q Consensus 98 iw~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~-~~~~~ 175 (318)
+||+++++ ..... ..|...|.+++| ++++.+|++|+.||.|++||+++++.. ..+..
T Consensus 153 ~wd~~~~~--------------~~~~~~~~~~~~i~~~~~-------~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~ 211 (343)
T 3lrv_A 153 FQSYEDDS--------------QYIVHSAKSDVEYSSGVL-------HKDSLLLALYSPDGILDVYNLSSPDQASSRFPV 211 (343)
T ss_dssp EEESSSSC--------------EEEEECCCSSCCCCEEEE-------CTTSCEEEEECTTSCEEEEESSCTTSCCEECCC
T ss_pred EEECCCCc--------------EEEEEecCCCCceEEEEE-------CCCCCEEEEEcCCCEEEEEECCCCCCCccEEec
Confidence 99999865 23333 345668999999 899999999999999999999998766 55543
Q ss_pred cccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCee-eEeeeeecccCcee--EEEEcC
Q 021036 176 HCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKF-DKVGSYNAHDQVVT--GLAWAF 252 (318)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~-~~~~~~~~h~~~v~--~~~~~~ 252 (318)
.|..+|++++|+ |++.+|++++ ++.|++|| ++..+. ..+..+..|...+. +++|+|
T Consensus 212 -------------~h~~~v~~l~fs-----~~g~~l~s~~-~~~v~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (343)
T 3lrv_A 212 -------------DEEAKIKEVKFA-----DNGYWMVVEC-DQTVVCFD--LRKDVGTLAYPTYTIPEFKTGTVTYDIDD 270 (343)
T ss_dssp -------------CTTSCEEEEEEC-----TTSSEEEEEE-SSBEEEEE--TTSSTTCBSSCCCBC-----CCEEEEECT
T ss_pred -------------cCCCCEEEEEEe-----CCCCEEEEEe-CCeEEEEE--cCCCCcceeecccccccccccceEEEECC
Confidence 144589999999 9999999999 55999995 444431 11222223444444 699999
Q ss_pred CCCEEEEecC-CCcEEEEEecCC
Q 021036 253 DGCCLYSCSQ-DNFVRSWIFHGN 274 (318)
Q Consensus 253 ~~~~l~s~~~-d~~v~iwd~~~~ 274 (318)
+|++|++++. |+.|++|++...
T Consensus 271 ~g~~l~~~s~~d~~i~v~~~~~~ 293 (343)
T 3lrv_A 271 SGKNMIAYSNESNSLTIYKFDKK 293 (343)
T ss_dssp TSSEEEEEETTTTEEEEEEECTT
T ss_pred CCCEEEEecCCCCcEEEEEEccc
Confidence 9999999988 999999999653
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-25 Score=198.21 Aligned_cols=230 Identities=11% Similarity=0.057 Sum_probs=167.6
Q ss_pred CcCCCCCccceEEeeCCCceeEeecC--CCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEE
Q 021036 10 NKMKDSNTHPTVAASKSKGNSITKIP--SNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSIL 87 (318)
Q Consensus 10 ~~~~~~~~~~~~t~s~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l 87 (318)
..+.+.+...+++++.|+.+++||+. +++++..+.... +... +.+++|+|++ ++|
T Consensus 108 ~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~--~~~~---v~~~~~sp~~------------------~~l 164 (450)
T 2vdu_B 108 LRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFC--FSKR---PNAISIAEDD------------------TTV 164 (450)
T ss_dssp EEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEE--CSSC---EEEEEECTTS------------------SEE
T ss_pred EEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeeccc--CCCC---ceEEEEcCCC------------------CEE
Confidence 34444444445899999999999998 777655554211 2222 4457777777 999
Q ss_pred EEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCC---CcEEEEEeCCCcEEEEEC
Q 021036 88 AVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNP---QVLLVTGSSDGSVRIWDG 164 (318)
Q Consensus 88 ~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~---~~~l~s~~~d~~v~iwd~ 164 (318)
++|+.||.|++|++.+++.. ......+.+|...|++++| +++ +++|++|+.|++|++||+
T Consensus 165 ~~~~~~g~v~~~~~~~~~~~----------~~~~~~~~~h~~~v~~~~~-------sp~~~~~~~l~s~~~d~~i~vwd~ 227 (450)
T 2vdu_B 165 IIADKFGDVYSIDINSIPEE----------KFTQEPILGHVSMLTDVHL-------IKDSDGHQFIITSDRDEHIKISHY 227 (450)
T ss_dssp EEEETTSEEEEEETTSCCCS----------SCCCCCSEECSSCEEEEEE-------EECTTSCEEEEEEETTSCEEEEEE
T ss_pred EEEeCCCcEEEEecCCcccc----------cccceeeecccCceEEEEE-------cCCCCCCcEEEEEcCCCcEEEEEC
Confidence 99999999999999876531 0033467789999999999 777 889999999999999999
Q ss_pred CCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeec----
Q 021036 165 YIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNA---- 240 (318)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~---- 240 (318)
.+++....+. ..|...|.+++|+ ++.+|++++.|+.|++| |.++++ .+..+..
T Consensus 228 ~~~~~~~~~~-------------~~h~~~v~~~~~s------d~~~l~s~~~d~~v~vw--d~~~~~--~~~~~~~~~~~ 284 (450)
T 2vdu_B 228 PQCFIVDKWL-------------FGHKHFVSSICCG------KDYLLLSAGGDDKIFAW--DWKTGK--NLSTFDYNSLI 284 (450)
T ss_dssp SCTTCEEEEC-------------CCCSSCEEEEEEC------STTEEEEEESSSEEEEE--ETTTCC--EEEEEECHHHH
T ss_pred CCCceeeeee-------------cCCCCceEEEEEC------CCCEEEEEeCCCeEEEE--ECCCCc--Eeeeecchhhh
Confidence 9887665522 2345589999994 78899999999999999 555655 3444432
Q ss_pred ---------------------ccCceeEEEEcCCCCEEEEec-CCCcEEEEEe--cCC-ceeeeecCCCCCCccccccCC
Q 021036 241 ---------------------HDQVVTGLAWAFDGCCLYSCS-QDNFVRSWIF--HGN-SLSQVSIPTNTPGLQSCTDLP 295 (318)
Q Consensus 241 ---------------------h~~~v~~~~~~~~~~~l~s~~-~d~~v~iwd~--~~~-~~~~~~~~~~~~~~~~~~~~~ 295 (318)
....|.+++|+|++++|++++ .|+.|++|++ ..+ .+..+. .+.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~------------~~~ 352 (450)
T 2vdu_B 285 KPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQ------------IIT 352 (450)
T ss_dssp GGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEE------------EEE
T ss_pred hhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeecc------------Eec
Confidence 235689999999999999988 8999999999 443 111111 111
Q ss_pred CcceeeeEEEEcCCCcEEEE
Q 021036 296 DAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 296 ~h~~~v~~v~~sp~~~~l~~ 315 (318)
.| ..|.+++|+|++.++++
T Consensus 353 ~~-~~v~~~~~~~~~~~v~~ 371 (450)
T 2vdu_B 353 FP-YNVISLSAHNDEFQVTL 371 (450)
T ss_dssp CS-SCEEEEEEETTEEEEEE
T ss_pred cC-CceEEEEecCCcEEEEE
Confidence 12 37899999996544443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.94 E-value=8.1e-26 Score=212.87 Aligned_cols=194 Identities=16% Similarity=0.160 Sum_probs=160.0
Q ss_pred CCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCC
Q 021036 68 LSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQ 147 (318)
Q Consensus 68 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~ 147 (318)
+.+|...|.+++++|++++|++|+.||.|+|||+.++ +.+..+.+|..+|.+++| ++++
T Consensus 9 ~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~--------------~~~~~~~~~~~~v~~~~~-------s~~~ 67 (814)
T 3mkq_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ--------------VEVRSIQVTETPVRAGKF-------IARK 67 (814)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT--------------EEEEEEECCSSCEEEEEE-------EGGG
T ss_pred eecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCC--------------ceEEEEecCCCcEEEEEE-------eCCC
Confidence 3445566666666666699999999999999999884 466788899999999999 8999
Q ss_pred cEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeecc
Q 021036 148 VLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDI 227 (318)
Q Consensus 148 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 227 (318)
++|++++.||.|++||+.+++....+..|. ..|.+++|+ |++.+|++++.||.|++|+++
T Consensus 68 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~--------------~~v~~~~~s-----~~~~~l~~~~~dg~i~vw~~~- 127 (814)
T 3mkq_A 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHP--------------DYIRSIAVH-----PTKPYVLSGSDDLTVKLWNWE- 127 (814)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEECCS--------------SCEEEEEEC-----SSSSEEEEEETTSEEEEEEGG-
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEEecCC--------------CCEEEEEEe-----CCCCEEEEEcCCCEEEEEECC-
Confidence 999999999999999999998777765444 489999999 999999999999999999654
Q ss_pred CCCeeeEeeeeecccCceeEEEEcC-CCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEE
Q 021036 228 SCNKFDKVGSYNAHDQVVTGLAWAF-DGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAV 306 (318)
Q Consensus 228 ~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 306 (318)
++. .....+.+|...|.+++|+| ++..|++++.||.|++||+.++......... +...+..++|
T Consensus 128 -~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~-------------~~~~v~~~~~ 192 (814)
T 3mkq_A 128 -NNW-ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG-------------QERGVNYVDY 192 (814)
T ss_dssp -GTS-EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECC-------------CTTCCCEEEE
T ss_pred -CCc-eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecC-------------CCCCEEEEEE
Confidence 431 25667788999999999999 7889999999999999999775543322221 2247899999
Q ss_pred cC--CCcEEEEEe
Q 021036 307 SP--GNLVVAMVQ 317 (318)
Q Consensus 307 sp--~~~~l~~~~ 317 (318)
+| ++.+|+++.
T Consensus 193 ~~~~~~~~l~~~~ 205 (814)
T 3mkq_A 193 YPLPDKPYMITAS 205 (814)
T ss_dssp CCSTTCCEEEEEC
T ss_pred EECCCCCEEEEEe
Confidence 99 999999874
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-25 Score=195.22 Aligned_cols=209 Identities=16% Similarity=0.162 Sum_probs=153.9
Q ss_pred CCCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCC-CccEEEEe
Q 021036 12 MKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSN-WFSILAVG 90 (318)
Q Consensus 12 ~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~-~~~~l~~g 90 (318)
+.+.+...+++|+.|+.|++||+.++........ +...+..|...|.++++++ ++.+|+++
T Consensus 189 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~------------------~~~~~~~h~~~v~~v~~~p~~~~~l~s~ 250 (430)
T 2xyi_A 189 WNPNLNGYLLSASDDHTICLWDINATPKEHRVID------------------AKNIFTGHTAVVEDVAWHLLHESLFGSV 250 (430)
T ss_dssp ECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEE------------------CSEEECCCSSCEEEEEECSSCTTEEEEE
T ss_pred eCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceec------------------cceeecCCCCCEeeeEEeCCCCCEEEEE
Confidence 3444445789999999999999987543211100 0011222333444444444 35899999
Q ss_pred cCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCc-EEEEEeCCCcEEEEECCCc-c
Q 021036 91 GRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQV-LLVTGSSDGSVRIWDGYIQ-E 168 (318)
Q Consensus 91 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~-~ 168 (318)
+.||.|++||++++.. .+.+..+..|...|++++| ++++. +|++|+.||.|++||+++. +
T Consensus 251 ~~dg~i~i~d~~~~~~-----------~~~~~~~~~~~~~v~~i~~-------~p~~~~~l~tg~~dg~v~vwd~~~~~~ 312 (430)
T 2xyi_A 251 ADDQKLMIWDTRNNNT-----------SKPSHTVDAHTAEVNCLSF-------NPYSEFILATGSADKTVALWDLRNLKL 312 (430)
T ss_dssp ETTSEEEEEETTCSCS-----------SSCSEEEECCSSCEEEEEE-------CSSCTTEEEEEETTSEEEEEETTCTTS
T ss_pred eCCCeEEEEECCCCCC-----------CcceeEeecCCCCeEEEEe-------CCCCCCEEEEEeCCCeEEEEeCCCCCC
Confidence 9999999999987531 1344566789999999999 77776 7999999999999999974 4
Q ss_pred eeeeecccccccccceeeeeecccceeEEEEeeccCCCCc-eEEEEEeCCCcEEEeeeccCCC----------eeeEeee
Q 021036 169 LQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRL-MLLAVGKGSGSFDLWKCDISCN----------KFDKVGS 237 (318)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~-~~l~~~~~dg~i~vw~~~~~~~----------~~~~~~~ 237 (318)
.+..+.. |...|.+++|+ |++ .+|++++.||.|++|++..... ....+..
T Consensus 313 ~~~~~~~--------------h~~~v~~i~~s-----p~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 373 (430)
T 2xyi_A 313 KLHSFES--------------HKDEIFQVQWS-----PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFI 373 (430)
T ss_dssp CSEEEEC--------------CSSCEEEEEEC-----SSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEE
T ss_pred CeEEeec--------------CCCCEEEEEEC-----CCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEE
Confidence 4444443 45589999999 887 5799999999999997654221 0135667
Q ss_pred eecccCceeEEEEcCCCC-EEEEecCCCcEEEEEecCCc
Q 021036 238 YNAHDQVVTGLAWAFDGC-CLYSCSQDNFVRSWIFHGNS 275 (318)
Q Consensus 238 ~~~h~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~ 275 (318)
+.+|...|++++|+|++. +|++++.||.|++|++....
T Consensus 374 ~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~ 412 (430)
T 2xyi_A 374 HGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV 412 (430)
T ss_dssp CCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred cCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccccc
Confidence 778999999999999999 89999999999999997543
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-24 Score=185.89 Aligned_cols=241 Identities=15% Similarity=0.110 Sum_probs=145.5
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEE-EEecCCCcE
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSIL-AVGGRSGKV 96 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l-~~g~~dg~i 96 (318)
..+++|+ +..+++||+.+++....... . .+..+.|.+.. +++ ++|+.|+.|
T Consensus 32 ~~la~g~-~~~~~iw~~~~~~~~~~~~~-----~----~~~~~~~~~~~------------------~~~~~~~~~d~~v 83 (355)
T 3vu4_A 32 SCLILST-LKSFEIYNVHPVAHIMSQEM-----R----HLSKVRMLHRT------------------NYVAFVTGVKEVV 83 (355)
T ss_dssp SEEEEEC-SSEEEEEEETTEEEEEEEEC-----S----CCCEEEECTTS------------------SEEEEECSSTTEE
T ss_pred CEEEEEc-CCEEEEEecCCcceeeeeec-----C----CeEEEEEcCCC------------------CEEEEEECCccEE
Confidence 3445555 45689999886554322211 1 12336666665 555 678888999
Q ss_pred EEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCC-----------------------------
Q 021036 97 SLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQ----------------------------- 147 (318)
Q Consensus 97 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~----------------------------- 147 (318)
++||..+++ .+..+. +...|.++.+ +++.
T Consensus 84 ~iWd~~~~~--------------~~~~~~-~~~~v~~v~~-------~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~ 141 (355)
T 3vu4_A 84 HIWDDVKKQ--------------DVSRIK-VDAPVKDLFL-------SREFIVVSYGDVISVFKFGNPWKRITDDIRFGG 141 (355)
T ss_dssp EEEETTTTE--------------EEEEEE-CSSCEEEEEE-------CSSEEEEEETTEEEEEESSTTCCBSSCCEEEEE
T ss_pred EEEECCCCc--------------EEEEEE-CCCceEEEEE-------cCCEEEEEEcCEEEEEECCCCceeeEEeccCCc
Confidence 999998864 334443 4557777777 3332
Q ss_pred ------cEEEE--EeCCCcEEEEECCCcceeeeecccc--cccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCC
Q 021036 148 ------VLLVT--GSSDGSVRIWDGYIQELQKSAEAHC--VPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGS 217 (318)
Q Consensus 148 ------~~l~s--~~~d~~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~d 217 (318)
.+++. |+.||.|++||+.+++......... ....+.......|..+|++++|+ |++.+|++|+.|
T Consensus 142 ~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s-----~~g~~l~s~s~d 216 (355)
T 3vu4_A 142 VCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLN-----RKSDMVATCSQD 216 (355)
T ss_dssp EEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEEC-----TTSSEEEEEETT
T ss_pred eEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEEC-----CCCCEEEEEeCC
Confidence 12222 2344455555544332110000000 00000013345678899999999 999999999999
Q ss_pred Cc-EEEeeeccCCCeeeEeeeee-c-ccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCC---CCCcc--
Q 021036 218 GS-FDLWKCDISCNKFDKVGSYN-A-HDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTN---TPGLQ-- 289 (318)
Q Consensus 218 g~-i~vw~~~~~~~~~~~~~~~~-~-h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~---~~~~~-- 289 (318)
++ |++| |.++++ .+..+. + |...|++++|+|+|++|++++.|++|++||+............. ...+.
T Consensus 217 ~~~v~iw--d~~~~~--~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (355)
T 3vu4_A 217 GTIIRVF--KTEDGV--LVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSE 292 (355)
T ss_dssp CSEEEEE--ETTTCC--EEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCS
T ss_pred CCEEEEE--ECCCCc--EEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccc
Confidence 98 9999 566666 667777 5 99999999999999999999999999999997643221110000 00000
Q ss_pred ---ccccC-CCcceeeeEEEEcCCCcEEEEEe
Q 021036 290 ---SCTDL-PDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 290 ---~~~~~-~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
....+ ..+......++|+||+++|+++.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~ 324 (355)
T 3vu4_A 293 WSLCNFKLSVDKHVRGCKIAWISESSLVVVWP 324 (355)
T ss_dssp SCSEEEECCCCTTCCCCEEEESSSSEEEEEET
T ss_pred cceeEEEeccCCCCCceEEEEeCCCCEEEEEe
Confidence 00001 11223346799999999998873
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=6e-25 Score=193.15 Aligned_cols=208 Identities=16% Similarity=0.232 Sum_probs=162.7
Q ss_pred ccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcE
Q 021036 17 THPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKV 96 (318)
Q Consensus 17 ~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i 96 (318)
...+++|+.|++|++||+.+++.+..+.. |... +.++.|+ + ++|++|+.||.|
T Consensus 129 g~~l~sg~~dg~i~vwd~~~~~~~~~~~~----h~~~---v~~~~~~--~------------------~~l~s~~~dg~i 181 (445)
T 2ovr_B 129 GNRIVSGSDDNTLKVWSAVTGKCLRTLVG----HTGG---VWSSQMR--D------------------NIIISGSTDRTL 181 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTCCEEEECCC----CSSC---EEEEEEE--T------------------TEEEEEETTSCE
T ss_pred CCEEEEEECCCcEEEEECCCCcEEEEEcC----CCCC---EEEEEec--C------------------CEEEEEeCCCeE
Confidence 45689999999999999998876444332 3332 3335554 2 799999999999
Q ss_pred EEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeeccc
Q 021036 97 SLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAH 176 (318)
Q Consensus 97 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 176 (318)
++||+.++ +.+..+.+|...|.++.| + ++.|++|+.||+|++||+.+++....+..+
T Consensus 182 ~vwd~~~~--------------~~~~~~~~h~~~v~~~~~-------~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~ 238 (445)
T 2ovr_B 182 KVWNAETG--------------ECIHTLYGHTSTVRCMHL-------H--EKRVVSGSRDATLRVWDIETGQCLHVLMGH 238 (445)
T ss_dssp EEEETTTT--------------EEEEEECCCSSCEEEEEE-------E--TTEEEEEETTSEEEEEESSSCCEEEEEECC
T ss_pred EEEECCcC--------------cEEEEECCCCCcEEEEEe-------c--CCEEEEEeCCCEEEEEECCCCcEEEEEcCC
Confidence 99999984 466788899999999999 3 467999999999999999998877766544
Q ss_pred ccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCE
Q 021036 177 CVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCC 256 (318)
Q Consensus 177 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 256 (318)
. ..+.++++. +..+++|+.||.|++| +.++++ .+..+.+|...|.+++| ++.+
T Consensus 239 ~--------------~~v~~~~~~-------~~~l~~~~~dg~i~iw--d~~~~~--~~~~~~~~~~~v~~~~~--~~~~ 291 (445)
T 2ovr_B 239 V--------------AAVRCVQYD-------GRRVVSGAYDFMVKVW--DPETET--CLHTLQGHTNRVYSLQF--DGIH 291 (445)
T ss_dssp S--------------SCEEEEEEC-------SSCEEEEETTSCEEEE--EGGGTE--EEEEECCCSSCEEEEEE--CSSE
T ss_pred c--------------ccEEEEEEC-------CCEEEEEcCCCEEEEE--ECCCCc--EeEEecCCCCceEEEEE--CCCE
Confidence 4 478887773 6789999999999999 555655 67788899999999999 7889
Q ss_pred EEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 257 LYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 257 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
+++++.|+.|++||++++...... .+|...+.+++++ +.++++|.
T Consensus 292 l~~~~~d~~i~i~d~~~~~~~~~~--------------~~~~~~v~~~~~~--~~~l~~~~ 336 (445)
T 2ovr_B 292 VVSGSLDTSIRVWDVETGNCIHTL--------------TGHQSLTSGMELK--DNILVSGN 336 (445)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEE--------------CCCCSCEEEEEEE--TTEEEEEE
T ss_pred EEEEeCCCeEEEEECCCCCEEEEE--------------cCCcccEEEEEEe--CCEEEEEe
Confidence 999999999999999887654321 2244467777664 55777763
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-25 Score=183.55 Aligned_cols=205 Identities=8% Similarity=-0.030 Sum_probs=139.7
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccC----CCCcccccccCCCC---CccEEEEe
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRL----SSKKYPVPQNGSSN---WFSILAVG 90 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~----~~~~~~v~~~~~s~---~~~~l~~g 90 (318)
..+++++ .++++|++++++.+... ..+|... +..++++|+++. ..|...+..++|++ ++.+|++|
T Consensus 128 ~~l~s~g--~~~~v~~l~~g~lv~ss---~~g~d~~---V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSg 199 (356)
T 2w18_A 128 QVLLKSG--NIKAVLGLTKRRLVSSS---GTLSDQQ---VEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGT 199 (356)
T ss_dssp EEEEEEE--EEEEEEEETTTEEEEEE---SSSTTCE---EEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEE
T ss_pred cEEEeCC--CeEEEEecCCCcEEEec---ccCCCCc---EEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEe
Confidence 3344444 33777887655432221 1113333 333677776642 35677777778877 67999999
Q ss_pred cCCCcEEEEEccCCccccccccccCCceeEEeeecccc---ccEEEEEeeeecCCCCCCCcEE------------EEEeC
Q 021036 91 GRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHN---SWITSISLAVLSSDSSNPQVLL------------VTGSS 155 (318)
Q Consensus 91 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~p~~~~~~~~~~~l------------~s~~~ 155 (318)
+.|++|+|||+++++ .++++.+|. ..+.+++| +|+|.++ ++|+.
T Consensus 200 S~D~TIkIWDl~TGk--------------~l~tL~g~~~~v~~v~~vaf-------SpdG~~lvs~s~~~~~w~laSGs~ 258 (356)
T 2w18_A 200 TIMNNIVIWNLKTGQ--------------LLKKMHIDDSYQASVCHKAY-------SEMGLLFIVLSHPCAKESESLRSP 258 (356)
T ss_dssp ETTSEEEEEETTTCC--------------EEEEEECCC---CCCEEEEE-------EETTEEEEEEC------------C
T ss_pred cCCCcEEEEECCCCc--------------EEEEEcCCCcceeeeEEEEE-------CCCCCEEEEeccCCCcceeeccCC
Confidence 999999999999965 556666543 46777889 6777765 66889
Q ss_pred CCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEe
Q 021036 156 DGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKV 235 (318)
Q Consensus 156 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 235 (318)
|++|++||..+++.+..+...- ..+|...+ +..+ .++.++++|+.|++|+|| |..+++ .+
T Consensus 259 D~tIklWd~~tgk~l~v~~~~~---------p~Gh~~~~--lsg~-----~sg~~lASgS~DgTIkIW--Dl~tGk--~l 318 (356)
T 2w18_A 259 VFQLIVINPKTTLSVGVMLYCL---------PPGQAGRF--LEGD-----VKDHCAAAILTSGTIAIW--DLLLGQ--CT 318 (356)
T ss_dssp CEEEEEEETTTTEEEEEEEECC---------CTTCCCCE--EEEE-----EETTEEEEEETTSCEEEE--ETTTCS--EE
T ss_pred CcEEEEEECCCCEEEEEEEeec---------cCCCccee--Eccc-----cCCCEEEEEcCCCcEEEE--ECCCCc--EE
Confidence 9999999999988765442100 01122222 2333 346789999999999999 667776 67
Q ss_pred eeeecccCcee-EEEEcCCCCEEEEecCCCcEEEEEe
Q 021036 236 GSYNAHDQVVT-GLAWAFDGCCLYSCSQDNFVRSWIF 271 (318)
Q Consensus 236 ~~~~~h~~~v~-~~~~~~~~~~l~s~~~d~~v~iwd~ 271 (318)
.++.+|...+. .++|+|+|++|++|+.|++|+|||+
T Consensus 319 ~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 319 ALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 78888887655 5899999999999999999999996
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=4e-25 Score=193.90 Aligned_cols=230 Identities=13% Similarity=0.139 Sum_probs=161.2
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccc--cccceeeeecccccCCCCcccccccCCCCCccEEEEecCC
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSA--MLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRS 93 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~d 93 (318)
+...+++++.||++++||.+. ++..+. +... ...+.+++|+|++ ++||+|+.|
T Consensus 96 dG~~LAs~s~dg~V~iwd~~~--~l~~l~-----~~~~~~~~sv~svafSPDG------------------~~LAsgs~D 150 (588)
T 2j04_A 96 IDDWMAVLSNNGNVSVFKDNK--MLTNLD-----SKGNLSSRTYHCFEWNPIE------------------SSIVVGNED 150 (588)
T ss_dssp SSSCEEEEETTSCEEEEETTE--EEEECC-----CSSCSTTTCEEEEEECSSS------------------SCEEEEETT
T ss_pred CCCEEEEEeCCCcEEEEeCCc--eeeecc-----CCCccccccEEEEEEcCCC------------------CEEEEEcCC
Confidence 445589999999999999544 211111 1110 0123357777776 999999999
Q ss_pred CcEEEEEccCCccccccccccCCceeEEeee----ccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcce
Q 021036 94 GKVSLWRICVPKCYSVEDCKVPTTAVLIGLF----QAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQEL 169 (318)
Q Consensus 94 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~----~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 169 (318)
|+|+||++.++.... ...-.+..+ .+|.+.|.+++| +|+| +++++.|++|++||+.+++.
T Consensus 151 GtVkIWd~~~~~l~~-------~~~i~l~ti~~~~~gh~~~V~sVaw-------SPdg--Laass~D~tVrlWd~~~~~~ 214 (588)
T 2j04_A 151 GELQFFSIRKNSENT-------PEFYFESSIRLSDAGSKDWVTHIVW-------YEDV--LVAALSNNSVFSMTVSASSH 214 (588)
T ss_dssp SEEEEEECCCCTTTC-------CCCEEEEEEECSCTTCCCCEEEEEE-------ETTE--EEEEETTCCEEEECCCSSSS
T ss_pred CEEEEEECCCCcccc-------ccceeeeeeecccccccccEEEEEE-------cCCc--EEEEeCCCeEEEEECCCCcc
Confidence 999999999864200 000134554 678899999999 8888 88899999999999987763
Q ss_pred e---eeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCcee
Q 021036 170 Q---KSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVT 246 (318)
Q Consensus 170 ~---~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~ 246 (318)
. .++. ..|...|.+++|+ +..+|+++ ++.|++| +..+++ ......+|.+.|+
T Consensus 215 ~~~~~tL~-------------~~h~~~V~svaFs-------g~~LASa~-~~tIkLW--d~~~~~--~~~~~~gh~~~V~ 269 (588)
T 2j04_A 215 QPVSRMIQ-------------NASRRKITDLKIV-------DYKVVLTC-PGYVHKI--DLKNYS--ISSLKTGSLENFH 269 (588)
T ss_dssp CCCEEEEE-------------CCCSSCCCCEEEE-------TTEEEEEC-SSEEEEE--ETTTTE--EEEEECSCCSCCC
T ss_pred ccceeeec-------------ccccCcEEEEEEE-------CCEEEEEe-CCeEEEE--ECCCCe--EEEEEcCCCceEE
Confidence 2 2231 1244589999996 47888887 6999999 555665 2122227999999
Q ss_pred EEEE--cCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCcccc-------------ccCCCcceeeeEEEEcCCCc
Q 021036 247 GLAW--AFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSC-------------TDLPDAFVSCLGMAVSPGNL 311 (318)
Q Consensus 247 ~~~~--~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~-------------~~~~~h~~~v~~v~~sp~~~ 311 (318)
.++| +|++..++++++||+ ++|.... +...++...+++. .....+...|++++|+|||+
T Consensus 270 ~va~~~s~d~~~La~a~edG~-klw~~d~-----~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~ 343 (588)
T 2j04_A 270 IIPLNHEKESTILLMSNKTSY-KVLLEDE-----LHVTADNIIAPYLEKKFKKWSTIWNEFNNYETTLVIHGISLSPDGY 343 (588)
T ss_dssp EEEETTCSSCEEEEECSSCEE-EEEESSS-----EEEECCCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSS
T ss_pred EEEeeeCCCCCEEEEEcCCCC-EEEeecc-----EEECCCceEEEEcCCEEEEEECCCCceeeeccceEEEEEEECCCCC
Confidence 9999 999999999999999 9999762 2233333322210 01113366799999999999
Q ss_pred EEEEEe
Q 021036 312 VVAMVQ 317 (318)
Q Consensus 312 ~l~~~~ 317 (318)
.+|++.
T Consensus 344 ~lA~~~ 349 (588)
T 2j04_A 344 SIAIVY 349 (588)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999874
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=9.1e-25 Score=186.44 Aligned_cols=204 Identities=15% Similarity=0.147 Sum_probs=145.3
Q ss_pred CCCCcccccccCCCCC---ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCC
Q 021036 68 LSSKKYPVPQNGSSNW---FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSS 144 (318)
Q Consensus 68 ~~~~~~~v~~~~~s~~---~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 144 (318)
+.+|..+|++++++++ |++|++|+.||.|++|++.+.. ......+.+|...|.+++| +
T Consensus 35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~------------~~~~~~~~~h~~~v~~~~~-------~ 95 (368)
T 3mmy_A 35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG------------QTIPKAQQMHTGPVLDVCW-------S 95 (368)
T ss_dssp SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS------------CEEEEEEEECSSCEEEEEE-------C
T ss_pred ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC------------ceeEEEeccccCCEEEEEE-------C
Confidence 4567777777777777 5999999999999999998732 2344678899999999999 8
Q ss_pred CCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEE--eeccCCCCceEEEEEeCCCcEEE
Q 021036 145 NPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSL--ILPVQSPRLMLLAVGKGSGSFDL 222 (318)
Q Consensus 145 ~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~~~~~~~~l~~~~~dg~i~v 222 (318)
+++++|++++.||.|++||+.+++.... ..|...|.+++| + +++.+|++++.||.|++
T Consensus 96 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~---------------~~~~~~v~~~~~~~~-----~~~~~l~~~~~dg~i~v 155 (368)
T 3mmy_A 96 DDGSKVFTASCDKTAKMWDLSSNQAIQI---------------AQHDAPVKTIHWIKA-----PNYSCVMTGSWDKTLKF 155 (368)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEEE---------------EECSSCEEEEEEEEC-----SSCEEEEEEETTSEEEE
T ss_pred cCCCEEEEEcCCCcEEEEEcCCCCceee---------------ccccCceEEEEEEeC-----CCCCEEEEccCCCcEEE
Confidence 9999999999999999999998875542 235568999999 7 89999999999999999
Q ss_pred eeeccCCCeeeEeeeeeccc-----------------------------------------CceeEEEEcCCCCE----E
Q 021036 223 WKCDISCNKFDKVGSYNAHD-----------------------------------------QVVTGLAWAFDGCC----L 257 (318)
Q Consensus 223 w~~~~~~~~~~~~~~~~~h~-----------------------------------------~~v~~~~~~~~~~~----l 257 (318)
|| .++++ .+..+..+. ..+.++.+.++... +
T Consensus 156 wd--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (368)
T 3mmy_A 156 WD--TRSSN--PMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGF 231 (368)
T ss_dssp EC--SSCSS--CSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEE
T ss_pred EE--CCCCc--EEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeE
Confidence 95 44443 222332221 23344444444333 8
Q ss_pred EEecCCCcEEEEEecCCce----eeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 258 YSCSQDNFVRSWIFHGNSL----SQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 258 ~s~~~d~~v~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
++++.|+.|++||++.... ..+..+.... ......+|...|.+++|+|++++|+++.
T Consensus 232 ~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~sp~~~~l~s~~ 292 (368)
T 3mmy_A 232 ALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNG---TNTSAPQDIYAVNGIAFHPVHGTLATVG 292 (368)
T ss_dssp EEEETTSEEEEEESSCSCHHHHSEEEECSEEC-------CCCEEECCEEEEEECTTTCCEEEEE
T ss_pred EEecCCCcEEEEecCCCCccccceeeeeeeccc---ccccccccccceEEEEEecCCCEEEEEc
Confidence 8888888888888876422 1222111100 0011233445799999999999999884
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-24 Score=180.36 Aligned_cols=212 Identities=12% Similarity=0.140 Sum_probs=161.5
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhcccccccc--------------ceeeeecccc---cCCCCccccccc
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLH--------------SLAVAWSPVL---RLSSKKYPVPQN 78 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~w~p~~---~~~~~~~~v~~~ 78 (318)
+...+++++.|+.+++|++........+.. -..|...+.. .....|+... .+..|..++.++
T Consensus 70 ~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~ 148 (313)
T 3odt_A 70 EKELLLFGGKDTMINGVPLFATSGEDPLYT-LIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDA 148 (313)
T ss_dssp TTTEEEEEETTSCEEEEETTCCTTSCC-CE-ECCCSSCEEEEEEETTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEE
T ss_pred CCCEEEEecCCCeEEEEEeeecCCCCcccc-hhhcccCEEEEEecCCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEE
Confidence 456789999999999999876532221111 0112222111 1122333111 144688899999
Q ss_pred CCCC-CccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeecc-ccccEEEEEeeeecCCCCCCCcEEEEEeCC
Q 021036 79 GSSN-WFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQA-HNSWITSISLAVLSSDSSNPQVLLVTGSSD 156 (318)
Q Consensus 79 ~~s~-~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d 156 (318)
.+.+ +++++++++.||.|++||.. +....+.. |...|.+++| ++++. |++++.|
T Consensus 149 ~~~~~~~~~l~~~~~d~~i~i~d~~----------------~~~~~~~~~~~~~i~~~~~-------~~~~~-~~~~~~d 204 (313)
T 3odt_A 149 KVVSFSENKFLTASADKTIKLWQND----------------KVIKTFSGIHNDVVRHLAV-------VDDGH-FISCSND 204 (313)
T ss_dssp EEEETTTTEEEEEETTSCEEEEETT----------------EEEEEECSSCSSCEEEEEE-------EETTE-EEEEETT
T ss_pred EEccCCCCEEEEEECCCCEEEEecC----------------ceEEEEeccCcccEEEEEE-------cCCCe-EEEccCC
Confidence 9888 89999999999999999943 34556666 8999999999 77887 9999999
Q ss_pred CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEee
Q 021036 157 GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVG 236 (318)
Q Consensus 157 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 236 (318)
+.|++||+++++....+..+. .+|.+++|+ |++ .|++++.||.|++| +.++++ .+.
T Consensus 205 g~i~i~d~~~~~~~~~~~~~~--------------~~i~~~~~~-----~~~-~l~~~~~dg~v~iw--d~~~~~--~~~ 260 (313)
T 3odt_A 205 GLIKLVDMHTGDVLRTYEGHE--------------SFVYCIKLL-----PNG-DIVSCGEDRTVRIW--SKENGS--LKQ 260 (313)
T ss_dssp SEEEEEETTTCCEEEEEECCS--------------SCEEEEEEC-----TTS-CEEEEETTSEEEEE--CTTTCC--EEE
T ss_pred CeEEEEECCchhhhhhhhcCC--------------ceEEEEEEe-----cCC-CEEEEecCCEEEEE--ECCCCc--eeE
Confidence 999999999988777765444 489999999 888 58899999999999 666665 667
Q ss_pred eeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCcee
Q 021036 237 SYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLS 277 (318)
Q Consensus 237 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 277 (318)
.+..|...|.+++|+|+++ +++++.||.|++||+.++...
T Consensus 261 ~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 261 VITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWA 300 (313)
T ss_dssp EEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCC
T ss_pred EEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCcee
Confidence 7888999999999999998 667999999999999876554
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.93 E-value=5.3e-25 Score=190.44 Aligned_cols=226 Identities=14% Similarity=0.135 Sum_probs=149.9
Q ss_pred cceEEeeCCCceeEeecCCCCCCCc--eec---chhccccccccceeeeeccccc--CCCCcccccccCCCCCccEEEEe
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPL--ITA---DQYASRSAMLHSLAVAWSPVLR--LSSKKYPVPQNGSSNWFSILAVG 90 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~w~p~~~--~~~~~~~v~~~~~s~~~~~l~~g 90 (318)
..+++++.|+.|++|+......... ... ....+.. .+..+.|++... ...|...+....+++++.+|+++
T Consensus 31 ~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~ 107 (393)
T 4gq1_A 31 SNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGL---PTLHLSFSSSCSYSENLHDGDGNVNSSPVYSLFLACV 107 (393)
T ss_dssp TTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSS---CEEEEEECTTCEEECC----------CCEEEEEEEEE
T ss_pred CCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCC---CeeeEeecCCccccccccCCCcceeecCCCCCEEEEE
Confidence 3467777899999997643222111 110 0111111 233477776543 22355556666677778999999
Q ss_pred cCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCC-CCCCCcEEEEEeCCCcEEEEECCCcce
Q 021036 91 GRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSD-SSNPQVLLVTGSSDGSVRIWDGYIQEL 169 (318)
Q Consensus 91 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~~~~~~~l~s~~~d~~v~iwd~~~~~~ 169 (318)
+.|++|+|||.++++... ...+..+.+|.+.|++++|.|.... ...++++|++|+.|++|+|||++++..
T Consensus 108 ~~d~~v~lw~~~~~~~~~---------~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~ 178 (393)
T 4gq1_A 108 CQDNTVRLIITKNETIIT---------QHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGP 178 (393)
T ss_dssp ETTSCEEEEEEETTEEEE---------EEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEE
T ss_pred eCCCcEEEEECCCCccce---------eeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCce
Confidence 999999999999875421 2345567899999999999776532 234789999999999999999987766
Q ss_pred eeeecccccccccceeeeeecccceeEEEEeeccCCCCc-eEEEEEeCCCcEEEeeeccCCCeeeE--------------
Q 021036 170 QKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRL-MLLAVGKGSGSFDLWKCDISCNKFDK-------------- 234 (318)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~-------------- 234 (318)
...+.. |..++.+++|+ |++ .+|++|+.|++|++||+ ++++...
T Consensus 179 ~~~~~~--------------~~~~v~~v~~~-----p~~~~~l~~~~~d~~v~~wd~--~t~~~~~~~~~~~~~~~~~~~ 237 (393)
T 4gq1_A 179 ILAGYP--------------LSSPGISVQFR-----PSNPNQLIVGERNGNIRIFDW--TLNLSAEENSQTELVKNPWLL 237 (393)
T ss_dssp EEEEEE--------------CSSCEEEEEEE-----TTEEEEEEEEETTSEEEEEET--TCCC----------CSCCCSE
T ss_pred eeeecC--------------CCCCcEEEEEC-----CCCCceEEecCCCCEEEEEEC--CCCcccccccccCCcccceEE
Confidence 555443 33488999999 776 58999999999999954 3332100
Q ss_pred ---------eeeeecccCceeEEEEc-CCCCEEEEecCCCcEEEEEecCCce
Q 021036 235 ---------VGSYNAHDQVVTGLAWA-FDGCCLYSCSQDNFVRSWIFHGNSL 276 (318)
Q Consensus 235 ---------~~~~~~h~~~v~~~~~~-~~~~~l~s~~~d~~v~iwd~~~~~~ 276 (318)
.....+|...+.++.|+ |+++.|++++.|+++++||+..+..
T Consensus 238 s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~ 289 (393)
T 4gq1_A 238 TLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANND 289 (393)
T ss_dssp EEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-----
T ss_pred ecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCC
Confidence 01124577888999987 7999999999999999999987543
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-23 Score=180.78 Aligned_cols=212 Identities=15% Similarity=0.127 Sum_probs=162.1
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEE-EEecCCCcE
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSIL-AVGGRSGKV 96 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l-~~g~~dg~i 96 (318)
..+++++.|+.|++||+.+++.+..+... .. +.+++|+|++ ++| ++++.|+.|
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~-----~~---~~~~~~s~dg------------------~~l~~~~~~d~~i 56 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVG-----SN---PMGAVISPDG------------------TKVYVANAHSNDV 56 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECS-----SS---EEEEEECTTS------------------SEEEEEEGGGTEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecC-----CC---cceEEECCCC------------------CEEEEECCCCCeE
Confidence 45788999999999999988766555431 11 3458888887 665 778899999
Q ss_pred EEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEE-EeCCCcEEEEECCCcceeeeecc
Q 021036 97 SLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVT-GSSDGSVRIWDGYIQELQKSAEA 175 (318)
Q Consensus 97 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s-~~~d~~v~iwd~~~~~~~~~~~~ 175 (318)
++||..+++ .+..+..+. .+.+++| ++++++|+. ++.|+.|++||+.+++....+..
T Consensus 57 ~v~d~~~~~--------------~~~~~~~~~-~v~~~~~-------spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~ 114 (391)
T 1l0q_A 57 SIIDTATNN--------------VIATVPAGS-SPQGVAV-------SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT 114 (391)
T ss_dssp EEEETTTTE--------------EEEEEECSS-SEEEEEE-------CTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred EEEECCCCe--------------EEEEEECCC-CccceEE-------CCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC
Confidence 999998854 445555444 8999999 889987754 55679999999999887766543
Q ss_pred cccccccceeeeeecccceeEEEEeeccCCCCceEE-EEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCC
Q 021036 176 HCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLL-AVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDG 254 (318)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 254 (318)
+. .+.+++|+ |+++.+ ++++.++.|++| +..+++ .+..+..+ ..+.+++|+|++
T Consensus 115 ~~---------------~~~~~~~s-----~dg~~l~~~~~~~~~v~~~--d~~~~~--~~~~~~~~-~~~~~~~~~~dg 169 (391)
T 1l0q_A 115 GK---------------SPLGLALS-----PDGKKLYVTNNGDKTVSVI--NTVTKA--VINTVSVG-RSPKGIAVTPDG 169 (391)
T ss_dssp SS---------------SEEEEEEC-----TTSSEEEEEETTTTEEEEE--ETTTTE--EEEEEECC-SSEEEEEECTTS
T ss_pred CC---------------CcceEEEC-----CCCCEEEEEeCCCCEEEEE--ECCCCc--EEEEEecC-CCcceEEECCCC
Confidence 32 57899999 899876 688889999999 566665 44555544 456999999999
Q ss_pred CEE-EEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 255 CCL-YSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 255 ~~l-~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
+++ ++++.|+.|++||++++......... ..+.+++|+|++++|+++.
T Consensus 170 ~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~---------------~~~~~~~~~~~g~~l~~~~ 218 (391)
T 1l0q_A 170 TKVYVANFDSMSISVIDTVTNSVIDTVKVE---------------AAPSGIAVNPEGTKAYVTN 218 (391)
T ss_dssp SEEEEEETTTTEEEEEETTTTEEEEEEECS---------------SEEEEEEECTTSSEEEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCeEEEEEecC---------------CCccceEECCCCCEEEEEe
Confidence 877 67788999999999887665433222 3778999999999887763
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-24 Score=183.70 Aligned_cols=193 Identities=9% Similarity=-0.025 Sum_probs=147.1
Q ss_pred CCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCc-
Q 021036 70 SKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQV- 148 (318)
Q Consensus 70 ~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~- 148 (318)
.|...|.++++++++++|++++.||.|++|++.+++. ......+.+|...|.+++| +++++
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~-----------~~~~~~~~~~~~~v~~~~~-------~~~~~~ 70 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK-----------NVDLLQSLRYKHPLLCCNF-------IDNTDL 70 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT-----------EEEEEEEEECSSCEEEEEE-------EESSSE
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCc-----------cccceeeeecCCceEEEEE-------CCCCCc
Confidence 3455555555555569999999999999999987542 1234455689999999999 78899
Q ss_pred EEEEEeCCCcEEEEEC-CCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeecc
Q 021036 149 LLVTGSSDGSVRIWDG-YIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDI 227 (318)
Q Consensus 149 ~l~s~~~d~~v~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 227 (318)
+|++++.||.|++||+ .+++. ..+.. ..|...|.+++|+ | +.+|++++.|+.|++|++..
T Consensus 71 ~l~~~~~dg~i~~wd~~~~~~~-~~~~~------------~~~~~~v~~l~~~-----~-~~~l~s~~~d~~i~iwd~~~ 131 (342)
T 1yfq_A 71 QIYVGTVQGEILKVDLIGSPSF-QALTN------------NEANLGICRICKY-----G-DDKLIAASWDGLIEVIDPRN 131 (342)
T ss_dssp EEEEEETTSCEEEECSSSSSSE-EECBS------------CCCCSCEEEEEEE-----T-TTEEEEEETTSEEEEECHHH
T ss_pred EEEEEcCCCeEEEEEeccCCce-Eeccc------------cCCCCceEEEEeC-----C-CCEEEEEcCCCeEEEEcccc
Confidence 9999999999999999 77654 33332 0145589999999 8 99999999999999995442
Q ss_pred CC-------CeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecC-Ccee-eeecCCCCCCccccccCCCcc
Q 021036 228 SC-------NKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHG-NSLS-QVSIPTNTPGLQSCTDLPDAF 298 (318)
Q Consensus 228 ~~-------~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~-~~~~-~~~~~~~~~~~~~~~~~~~h~ 298 (318)
.. .+ ++..+. |...|.+++|+|++ +++++.|+.|++||+++ .... ..... .|.
T Consensus 132 ~~~~~~~~~~~--~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~-------------~~~ 193 (342)
T 1yfq_A 132 YGDGVIAVKNL--NSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEES-------------GLK 193 (342)
T ss_dssp HTTBCEEEEES--CSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEEC-------------SCS
T ss_pred cccccccccCC--eeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeec-------------CCC
Confidence 00 22 444555 88999999999987 99999999999999987 4432 11111 234
Q ss_pred eeeeEEEEcC-CCcEEEEEe
Q 021036 299 VSCLGMAVSP-GNLVVAMVQ 317 (318)
Q Consensus 299 ~~v~~v~~sp-~~~~l~~~~ 317 (318)
..+.+++|+| ++++++++.
T Consensus 194 ~~i~~i~~~~~~~~~l~~~~ 213 (342)
T 1yfq_A 194 YQIRDVALLPKEQEGYACSS 213 (342)
T ss_dssp SCEEEEEECSGGGCEEEEEE
T ss_pred CceeEEEECCCCCCEEEEEe
Confidence 5899999999 999999874
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.5e-23 Score=179.79 Aligned_cols=220 Identities=10% Similarity=0.049 Sum_probs=165.8
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchh-ccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCC
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQY-ASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSG 94 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg 94 (318)
+...+++++.|+.+++||+.+++....+..... .|... +.+++|+|++ +++++++.|+
T Consensus 133 ~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~---v~~~~~~~~~------------------~~~~s~~~d~ 191 (433)
T 3bws_A 133 NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGF---VETISIPEHN------------------ELWVSQMQAN 191 (433)
T ss_dssp SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCE---EEEEEEGGGT------------------EEEEEEGGGT
T ss_pred CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCc---eeEEEEcCCC------------------EEEEEECCCC
Confidence 556677888899999999998876543332111 12222 3446676665 9999999999
Q ss_pred cEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEE-EEeCCCcEEEEECCCcceeeee
Q 021036 95 KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLV-TGSSDGSVRIWDGYIQELQKSA 173 (318)
Q Consensus 95 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~-s~~~d~~v~iwd~~~~~~~~~~ 173 (318)
.|++||+++++ .+..+..|...+.+++| ++++++++ +++.|+.|++||+++++....+
T Consensus 192 ~v~~~d~~~~~--------------~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~ 250 (433)
T 3bws_A 192 AVHVFDLKTLA--------------YKATVDLTGKWSKILLY-------DPIRDLVYCSNWISEDISVIDRKTKLEIRKT 250 (433)
T ss_dssp EEEEEETTTCC--------------EEEEEECSSSSEEEEEE-------ETTTTEEEEEETTTTEEEEEETTTTEEEEEC
T ss_pred EEEEEECCCce--------------EEEEEcCCCCCeeEEEE-------cCCCCEEEEEecCCCcEEEEECCCCcEEEEe
Confidence 99999998744 55667788899999999 88888775 5557999999999988776665
Q ss_pred cccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe--------CCCcEEEeeeccCCCeeeEeeeeecccCce
Q 021036 174 EAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK--------GSGSFDLWKCDISCNKFDKVGSYNAHDQVV 245 (318)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~--------~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v 245 (318)
..+. .+.+++|+ |+++.+++++ .||.|++| +.++++ .+..+ .|...+
T Consensus 251 ~~~~---------------~~~~~~~~-----~~g~~l~~~~~~~~~~~~~dg~i~~~--d~~~~~--~~~~~-~~~~~~ 305 (433)
T 3bws_A 251 DKIG---------------LPRGLLLS-----KDGKELYIAQFSASNQESGGGRLGIY--SMDKEK--LIDTI-GPPGNK 305 (433)
T ss_dssp CCCS---------------EEEEEEEC-----TTSSEEEEEEEESCTTCSCCEEEEEE--ETTTTE--EEEEE-EEEECE
T ss_pred cCCC---------------CceEEEEc-----CCCCEEEEEECCCCccccCCCeEEEE--ECCCCc--EEeec-cCCCCc
Confidence 5332 57899999 9999998888 48899999 555665 33333 456688
Q ss_pred eEEEEcCCCCE-EEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 246 TGLAWAFDGCC-LYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 246 ~~~~~~~~~~~-l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
.+++|+|+++. +++++.|+.|++||+.+++........ ..+.+++|+|+|++|+++.
T Consensus 306 ~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~---------------~~~~~~~~s~dg~~l~~~~ 363 (433)
T 3bws_A 306 RHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVF---------------DKPNTIALSPDGKYLYVSC 363 (433)
T ss_dssp EEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECS---------------SSEEEEEECTTSSEEEEEE
T ss_pred ceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCC---------------CCCCeEEEcCCCCEEEEEe
Confidence 99999999974 567799999999999887655433222 3678999999999887763
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-23 Score=179.63 Aligned_cols=222 Identities=12% Similarity=0.055 Sum_probs=146.9
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccC-------------------CCCccccc
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRL-------------------SSKKYPVP 76 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~-------------------~~~~~~v~ 76 (318)
.....++++.|+++++||+.+++.+..+.. ... +.++.|+++... .....+..
T Consensus 70 ~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~-----~~~---v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~ 141 (355)
T 3vu4_A 70 TNYVAFVTGVKEVVHIWDDVKKQDVSRIKV-----DAP---VKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGG 141 (355)
T ss_dssp SSEEEEECSSTTEEEEEETTTTEEEEEEEC-----SSC---EEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEE
T ss_pred CCEEEEEECCccEEEEEECCCCcEEEEEEC-----CCc---eEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCc
Confidence 334457788999999999999877665542 122 233444443210 00000122
Q ss_pred ccCCCCCccEEEE--ecCCCcEEEEEccCCcccccccccc-CCceeE-EeeeccccccEEEEEeeeecCCCCCCCcEEEE
Q 021036 77 QNGSSNWFSILAV--GGRSGKVSLWRICVPKCYSVEDCKV-PTTAVL-IGLFQAHNSWITSISLAVLSSDSSNPQVLLVT 152 (318)
Q Consensus 77 ~~~~s~~~~~l~~--g~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~-~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s 152 (318)
.+++++ .+++. |+.||.|++||+.+++......... .....+ +..+.+|...|++++| ++++++|++
T Consensus 142 ~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~-------s~~g~~l~s 212 (355)
T 3vu4_A 142 VCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRL-------NRKSDMVAT 212 (355)
T ss_dssp EEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEE-------CTTSSEEEE
T ss_pred eEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEE-------CCCCCEEEE
Confidence 223333 45555 6899999999998754110000000 000112 5678899999999999 899999999
Q ss_pred EeCCCc-EEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCe
Q 021036 153 GSSDGS-VRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNK 231 (318)
Q Consensus 153 ~~~d~~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~ 231 (318)
|+.|++ |++||+++++++..+... .|...|.+++|+ |++++|++++.|++|++|+++.....
T Consensus 213 ~s~d~~~v~iwd~~~~~~~~~~~~g------------~h~~~v~~~~~s-----~~~~~l~s~s~d~~v~iw~~~~~~~~ 275 (355)
T 3vu4_A 213 CSQDGTIIRVFKTEDGVLVREFRRG------------LDRADVVDMKWS-----TDGSKLAVVSDKWTLHVFEIFNDQDN 275 (355)
T ss_dssp EETTCSEEEEEETTTCCEEEEEECT------------TCCSCEEEEEEC-----TTSCEEEEEETTCEEEEEESSCCSCC
T ss_pred EeCCCCEEEEEECCCCcEEEEEEcC------------CCCCcEEEEEEC-----CCCCEEEEEECCCEEEEEEccCCCCc
Confidence 999998 999999999888776510 034489999999 99999999999999999965432211
Q ss_pred eeEeeee---------------------ecccCceeEEEEcCCCCEEEEecCCCcEEEEEecC
Q 021036 232 FDKVGSY---------------------NAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 232 ~~~~~~~---------------------~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 273 (318)
....+ ..+......++|+++++++++++.||.+++|++..
T Consensus 276 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 276 --KRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp --CSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred --ccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence 11111 01122346789999999999999999999999875
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.92 E-value=2.5e-22 Score=173.31 Aligned_cols=215 Identities=19% Similarity=0.145 Sum_probs=160.2
Q ss_pred CCCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEE-EEe
Q 021036 12 MKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSIL-AVG 90 (318)
Q Consensus 12 ~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l-~~g 90 (318)
+.+.....+++++.|+++++||+.+++.+..+... . .+.+++|+|++ ++| +++
T Consensus 39 ~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~-----~---~v~~~~~spdg------------------~~l~~~~ 92 (391)
T 1l0q_A 39 ISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG-----S---SPQGVAVSPDG------------------KQVYVTN 92 (391)
T ss_dssp ECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS-----S---SEEEEEECTTS------------------SEEEEEE
T ss_pred ECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECC-----C---CccceEECCCC------------------CEEEEEE
Confidence 34444444578889999999999988775555431 1 24458888877 665 566
Q ss_pred cCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEE-EEEeCCCcEEEEECCCcce
Q 021036 91 GRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLL-VTGSSDGSVRIWDGYIQEL 169 (318)
Q Consensus 91 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l-~s~~~d~~v~iwd~~~~~~ 169 (318)
+.++.|++||+.+++ .+..+.. ...+.+++| ++++++| ++++.|+.|++||+.+++.
T Consensus 93 ~~~~~v~v~d~~~~~--------------~~~~~~~-~~~~~~~~~-------s~dg~~l~~~~~~~~~v~~~d~~~~~~ 150 (391)
T 1l0q_A 93 MASSTLSVIDTTSNT--------------VAGTVKT-GKSPLGLAL-------SPDGKKLYVTNNGDKTVSVINTVTKAV 150 (391)
T ss_dssp TTTTEEEEEETTTTE--------------EEEEEEC-SSSEEEEEE-------CTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred CCCCEEEEEECCCCe--------------EEEEEeC-CCCcceEEE-------CCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence 678999999999854 3444444 456899999 8898877 6888899999999998887
Q ss_pred eeeecccccccccceeeeeecccceeEEEEeeccCCCCceEE-EEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEE
Q 021036 170 QKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLL-AVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGL 248 (318)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~ 248 (318)
...+..+. .+..++|+ |+++.+ ++++.++.|++| |.++++ .+..+. +...+.++
T Consensus 151 ~~~~~~~~---------------~~~~~~~~-----~dg~~l~~~~~~~~~v~~~--d~~~~~--~~~~~~-~~~~~~~~ 205 (391)
T 1l0q_A 151 INTVSVGR---------------SPKGIAVT-----PDGTKVYVANFDSMSISVI--DTVTNS--VIDTVK-VEAAPSGI 205 (391)
T ss_dssp EEEEECCS---------------SEEEEEEC-----TTSSEEEEEETTTTEEEEE--ETTTTE--EEEEEE-CSSEEEEE
T ss_pred EEEEecCC---------------CcceEEEC-----CCCCEEEEEeCCCCEEEEE--ECCCCe--EEEEEe-cCCCccce
Confidence 76655433 56889999 898776 677889999999 566665 344443 56678999
Q ss_pred EEcCCCCEEEEec---CCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEE
Q 021036 249 AWAFDGCCLYSCS---QDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVA 314 (318)
Q Consensus 249 ~~~~~~~~l~s~~---~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~ 314 (318)
+|+|++++|++++ .++.|++||+.+++......... .+.+++|+|++++|+
T Consensus 206 ~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---------------~~~~~~~s~dg~~l~ 259 (391)
T 1l0q_A 206 AVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---------------DPAGIAVTPDGKKVY 259 (391)
T ss_dssp EECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---------------SEEEEEECTTSSEEE
T ss_pred EECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC---------------CccEEEEccCCCEEE
Confidence 9999999888887 68999999998876543322221 468999999998774
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-21 Score=171.69 Aligned_cols=214 Identities=12% Similarity=0.048 Sum_probs=160.5
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEE-EEecCCC
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSIL-AVGGRSG 94 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l-~~g~~dg 94 (318)
+...+++++.|+.+++||+.+++.+..+.. +... +.+++|+|++ +++ ++++.|+
T Consensus 180 ~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~----~~~~---~~~~~~~~~~------------------~~l~~~~~~~~ 234 (433)
T 3bws_A 180 HNELWVSQMQANAVHVFDLKTLAYKATVDL----TGKW---SKILLYDPIR------------------DLVYCSNWISE 234 (433)
T ss_dssp GTEEEEEEGGGTEEEEEETTTCCEEEEEEC----SSSS---EEEEEEETTT------------------TEEEEEETTTT
T ss_pred CCEEEEEECCCCEEEEEECCCceEEEEEcC----CCCC---eeEEEEcCCC------------------CEEEEEecCCC
Confidence 345678899999999999998776554432 2222 3457888877 666 5666899
Q ss_pred cEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEe--------CCCcEEEEECCC
Q 021036 95 KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS--------SDGSVRIWDGYI 166 (318)
Q Consensus 95 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~--------~d~~v~iwd~~~ 166 (318)
.|++||+.+++ .+..+..+ ..+.+++| ++++++|++++ .|+.|++||+.+
T Consensus 235 ~i~~~d~~~~~--------------~~~~~~~~-~~~~~~~~-------~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~ 292 (433)
T 3bws_A 235 DISVIDRKTKL--------------EIRKTDKI-GLPRGLLL-------SKDGKELYIAQFSASNQESGGGRLGIYSMDK 292 (433)
T ss_dssp EEEEEETTTTE--------------EEEECCCC-SEEEEEEE-------CTTSSEEEEEEEESCTTCSCCEEEEEEETTT
T ss_pred cEEEEECCCCc--------------EEEEecCC-CCceEEEE-------cCCCCEEEEEECCCCccccCCCeEEEEECCC
Confidence 99999998754 44455543 45899999 89999999888 488999999998
Q ss_pred cceeeeecccccccccceeeeeecccceeEEEEeeccCCCCce-EEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCce
Q 021036 167 QELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLM-LLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVV 245 (318)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v 245 (318)
++....+. +...+..++|+ |+++ ++++++.++.|++| +..+++ .+..+. +...+
T Consensus 293 ~~~~~~~~---------------~~~~~~~~~~~-----~~g~~l~~~~~~~~~v~v~--d~~~~~--~~~~~~-~~~~~ 347 (433)
T 3bws_A 293 EKLIDTIG---------------PPGNKRHIVSG-----NTENKIYVSDMCCSKIEVY--DLKEKK--VQKSIP-VFDKP 347 (433)
T ss_dssp TEEEEEEE---------------EEECEEEEEEC-----SSTTEEEEEETTTTEEEEE--ETTTTE--EEEEEE-CSSSE
T ss_pred CcEEeecc---------------CCCCcceEEEC-----CCCCEEEEEecCCCEEEEE--ECCCCc--EEEEec-CCCCC
Confidence 87655442 22367789998 8885 56777899999999 555655 444444 67789
Q ss_pred eEEEEcCCCCEEEEecC---------------CCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCC
Q 021036 246 TGLAWAFDGCCLYSCSQ---------------DNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGN 310 (318)
Q Consensus 246 ~~~~~~~~~~~l~s~~~---------------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~ 310 (318)
.+++|+|+|+++++++. ||.|++||+.+++........ ..+.+++|+|+|
T Consensus 348 ~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~---------------~~~~~~~~s~dg 412 (433)
T 3bws_A 348 NTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG---------------NQPTGLDVSPDN 412 (433)
T ss_dssp EEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS---------------SSEEEEEECTTS
T ss_pred CeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC---------------CCCceEEEcCCC
Confidence 99999999998888776 579999999887665433222 267999999999
Q ss_pred cEEEEE
Q 021036 311 LVVAMV 316 (318)
Q Consensus 311 ~~l~~~ 316 (318)
++|+++
T Consensus 413 ~~l~~~ 418 (433)
T 3bws_A 413 RYLVIS 418 (433)
T ss_dssp CEEEEE
T ss_pred CEEEEE
Confidence 998865
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-21 Score=168.56 Aligned_cols=212 Identities=12% Similarity=0.053 Sum_probs=153.1
Q ss_pred ceEEeeCC------CceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecC
Q 021036 19 PTVAASKS------KGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGR 92 (318)
Q Consensus 19 ~~~t~s~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~ 92 (318)
.++.++.+ +++++||+..+ ....+.. +... +.+++|+|++ ++|++++.
T Consensus 145 ~l~~~s~~~~~~~~~~i~i~d~~g~-~~~~l~~----~~~~---v~~~~~Spdg------------------~~la~~s~ 198 (415)
T 2hqs_A 145 RIAYVVQTNGGQFPYELRVSDYDGY-NQFVVHR----SPQP---LMSPAWSPDG------------------SKLAYVTF 198 (415)
T ss_dssp EEEEEEECSSSSCCEEEEEEETTSC-SCEEEEE----ESSC---EEEEEECTTS------------------SEEEEEEC
T ss_pred EEEEEEecCCCCccceEEEEcCCCC-CCEEEeC----CCCc---ceeeEEcCCC------------------CEEEEEEe
Confidence 45555544 79999999743 3333322 3333 4457888877 89999988
Q ss_pred CC---cEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEE-EEeCCCc--EEEEECCC
Q 021036 93 SG---KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLV-TGSSDGS--VRIWDGYI 166 (318)
Q Consensus 93 dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~-s~~~d~~--v~iwd~~~ 166 (318)
++ .|++||+.+++. ..+..|...+.+++| +|+|++|+ +++.|+. |++||+.+
T Consensus 199 ~~~~~~i~~~d~~tg~~---------------~~l~~~~~~~~~~~~-------spdg~~la~~~~~~g~~~i~~~d~~~ 256 (415)
T 2hqs_A 199 ESGRSALVIQTLANGAV---------------RQVASFPRHNGAPAF-------SPDGSKLAFALSKTGSLNLYVMDLAS 256 (415)
T ss_dssp TTSSCEEEEEETTTCCE---------------EEEECCSSCEEEEEE-------CTTSSEEEEEECTTSSCEEEEEETTT
T ss_pred cCCCcEEEEEECCCCcE---------------EEeecCCCcccCEEE-------cCCCCEEEEEEecCCCceEEEEECCC
Confidence 75 999999998652 245667789999999 89999877 6666654 99999988
Q ss_pred cceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeC-CCcEEEeeeccCCCeeeEeeeeecccCce
Q 021036 167 QELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKG-SGSFDLWKCDISCNKFDKVGSYNAHDQVV 245 (318)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~h~~~v 245 (318)
++.. .+.. +...+.+++|+ |+|+.|++++. ++...+|.++..+++. ..+..+...+
T Consensus 257 ~~~~-~l~~--------------~~~~~~~~~~s-----pdg~~l~~~s~~~g~~~i~~~d~~~~~~---~~l~~~~~~~ 313 (415)
T 2hqs_A 257 GQIR-QVTD--------------GRSNNTEPTWF-----PDSQNLAFTSDQAGRPQVYKVNINGGAP---QRITWEGSQN 313 (415)
T ss_dssp CCEE-ECCC--------------CSSCEEEEEEC-----TTSSEEEEEECTTSSCEEEEEETTSSCC---EECCCSSSEE
T ss_pred CCEE-eCcC--------------CCCcccceEEC-----CCCCEEEEEECCCCCcEEEEEECCCCCE---EEEecCCCcc
Confidence 7653 3322 23478899999 99998888775 5655555556666652 2344567788
Q ss_pred eEEEEcCCCCEEEEecCC---CcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 246 TGLAWAFDGCCLYSCSQD---NFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 246 ~~~~~~~~~~~l~s~~~d---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
.+++|+|+|++|++++.+ ..|++||+.++....+..+. .+.+++|+|||++|+++.
T Consensus 314 ~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~----------------~~~~~~~spdg~~l~~~s 372 (415)
T 2hqs_A 314 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF----------------LDETPSLAPNGTMVIYSS 372 (415)
T ss_dssp EEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSS----------------SCEEEEECTTSSEEEEEE
T ss_pred cCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCC----------------CcCCeEEcCCCCEEEEEE
Confidence 999999999999888764 58999999987765433221 678999999999888763
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-21 Score=168.53 Aligned_cols=231 Identities=10% Similarity=-0.002 Sum_probs=153.5
Q ss_pred CccceEEee----CCC----ceeEeec--CCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCcc
Q 021036 16 NTHPTVAAS----KSK----GNSITKI--PSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFS 85 (318)
Q Consensus 16 ~~~~~~t~s----~d~----~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~ 85 (318)
+...+++|+ .|| ++++||+ .+++++....... +...+. .+++++...+.. .... .....+.
T Consensus 74 g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~d~~~~---~~~g-~~~~~~~ 144 (415)
T 2hqs_A 74 GIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKV--NKQWLR---YAGHTASDEVFE---KLTG-IKGAFRT 144 (415)
T ss_dssp TCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEE--CGGGHH---HHHHHHHHHHHH---HHHS-SCCCTTC
T ss_pred CCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEc--ChhHHH---HHHHHHHHHHHH---HHcC-CCCcCCC
Confidence 344466776 567 8999999 8887653322211 222211 133333110000 0000 0001124
Q ss_pred EEEEecCC------CcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCC--
Q 021036 86 ILAVGGRS------GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDG-- 157 (318)
Q Consensus 86 ~l~~g~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~-- 157 (318)
.++.++.+ +.|++||++.+. .+.+.+|...|.+++| +|+|++|++++.++
T Consensus 145 ~l~~~s~~~~~~~~~~i~i~d~~g~~---------------~~~l~~~~~~v~~~~~-------Spdg~~la~~s~~~~~ 202 (415)
T 2hqs_A 145 RIAYVVQTNGGQFPYELRVSDYDGYN---------------QFVVHRSPQPLMSPAW-------SPDGSKLAYVTFESGR 202 (415)
T ss_dssp EEEEEEECSSSSCCEEEEEEETTSCS---------------CEEEEEESSCEEEEEE-------CTTSSEEEEEECTTSS
T ss_pred EEEEEEecCCCCccceEEEEcCCCCC---------------CEEEeCCCCcceeeEE-------cCCCCEEEEEEecCCC
Confidence 55555443 799999997532 3556778999999999 99999999999885
Q ss_pred -cEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEE-EEeCCCc--EEEeeeccCCCeee
Q 021036 158 -SVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLA-VGKGSGS--FDLWKCDISCNKFD 233 (318)
Q Consensus 158 -~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~-~~~~dg~--i~vw~~~~~~~~~~ 233 (318)
.|++||+.+++... +.. +...+.+++|+ |+|+.|+ +++.++. |++| +..+++
T Consensus 203 ~~i~~~d~~tg~~~~-l~~--------------~~~~~~~~~~s-----pdg~~la~~~~~~g~~~i~~~--d~~~~~-- 258 (415)
T 2hqs_A 203 SALVIQTLANGAVRQ-VAS--------------FPRHNGAPAFS-----PDGSKLAFALSKTGSLNLYVM--DLASGQ-- 258 (415)
T ss_dssp CEEEEEETTTCCEEE-EEC--------------CSSCEEEEEEC-----TTSSEEEEEECTTSSCEEEEE--ETTTCC--
T ss_pred cEEEEEECCCCcEEE-eec--------------CCCcccCEEEc-----CCCCEEEEEEecCCCceEEEE--ECCCCC--
Confidence 99999999887543 222 23378899999 9999777 6666666 6666 666665
Q ss_pred EeeeeecccCceeEEEEcCCCCEEEEecC-CC--cEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCC
Q 021036 234 KVGSYNAHDQVVTGLAWAFDGCCLYSCSQ-DN--FVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGN 310 (318)
Q Consensus 234 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~ 310 (318)
...+..|...+.+++|+|+|++|++++. ++ .|++||+.++....+..+ ...+.+++|+|||
T Consensus 259 -~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~---------------~~~~~~~~~spdG 322 (415)
T 2hqs_A 259 -IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWE---------------GSQNQDADVSSDG 322 (415)
T ss_dssp -EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCS---------------SSEEEEEEECTTS
T ss_pred -EEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecC---------------CCcccCeEECCCC
Confidence 2456678889999999999998888776 44 677778887765543322 2377899999999
Q ss_pred cEEEEEe
Q 021036 311 LVVAMVQ 317 (318)
Q Consensus 311 ~~l~~~~ 317 (318)
++|+++.
T Consensus 323 ~~l~~~~ 329 (415)
T 2hqs_A 323 KFMVMVS 329 (415)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 9998763
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-21 Score=170.46 Aligned_cols=195 Identities=15% Similarity=0.112 Sum_probs=134.3
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCce-eEEeeeccccccEEEEEeeeecCCCCCCCcEEE----EEeCCCcE
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTA-VLIGLFQAHNSWITSISLAVLSSDSSNPQVLLV----TGSSDGSV 159 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~----s~~~d~~v 159 (318)
.++++++.|+ +++|+...-.............. ........+...|.+++| ++++++|+ +++.|+.|
T Consensus 49 ~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-------spdg~~lav~~~sgs~d~~v 120 (434)
T 2oit_A 49 GLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLAL-------SCDNLTLSACMMSSEYGSII 120 (434)
T ss_dssp TEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEE-------CTTSCEEEEEEEETTTEEEE
T ss_pred CEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEE-------cCCCCEEEEEEeccCCCceE
Confidence 8999999888 99988653110000000000000 000011235678999999 89999999 78899999
Q ss_pred EEEECCCcc--------eeeeecccccccccceeeeeecccceeEEEEeeccCCCC-ceEEEEEeCCCcEEEeeeccCCC
Q 021036 160 RIWDGYIQE--------LQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPR-LMLLAVGKGSGSFDLWKCDISCN 230 (318)
Q Consensus 160 ~iwd~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~-~~~l~~~~~dg~i~vw~~~~~~~ 230 (318)
++||+.++. .+..+ .....|...|.+++|+ |+ +.+|++++.||+|++|| .+++
T Consensus 121 ~iwd~~~~~~~~~~~~~~~~~~-----------~~~~~h~~~V~~v~~~-----p~~~~~las~s~Dg~v~iwD--~~~~ 182 (434)
T 2oit_A 121 AFFDVRTFSNEAKQQKRPFAYH-----------KLLKDAGGMVIDMKWN-----PTVPSMVAVCLADGSIAVLQ--VTET 182 (434)
T ss_dssp EEEEHHHHHCTTCSSCCCSEEE-----------ECCCSGGGSEEEEEEC-----SSCTTEEEEEETTSCEEEEE--ESSS
T ss_pred EEEEccccccCCcCCcceeeee-----------eccCCCCCceEEEEEC-----CCCCCEEEEEECCCeEEEEE--cCCC
Confidence 999987651 11111 1123466799999999 76 89999999999999995 5555
Q ss_pred eeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCC
Q 021036 231 KFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGN 310 (318)
Q Consensus 231 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~ 310 (318)
. .+....+|...|++++|+|+|++|++|+.||+|++||++......+..+.. ....|...|.+++|++++
T Consensus 183 ~--~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~--------~~~~~~~~v~~v~w~~~~ 252 (434)
T 2oit_A 183 V--KVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPF--------YESDHPVRVLDVLWIGTY 252 (434)
T ss_dssp E--EEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTT--------CCTTSCEEEEEEEEEETT
T ss_pred c--ceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccccCCcc--------cCCCCceeEEEEEEecCc
Confidence 4 444556788999999999999999999999999999998333333322221 112355689999999999
Q ss_pred cEEEE
Q 021036 311 LVVAM 315 (318)
Q Consensus 311 ~~l~~ 315 (318)
.++++
T Consensus 253 ~~l~~ 257 (434)
T 2oit_A 253 VFAIV 257 (434)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 88854
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.3e-19 Score=148.43 Aligned_cols=220 Identities=11% Similarity=0.004 Sum_probs=151.4
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEE-ecCCC
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAV-GGRSG 94 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~-g~~dg 94 (318)
....+++.+.++.|++||..+++....+... ... . .++|+|++ +++++ +..++
T Consensus 9 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~----~~~---~-~~~~s~dg------------------~~l~~~~~~~~ 62 (331)
T 3u4y_A 9 SNFGIVVEQHLRRISFFSTDTLEILNQITLG----YDF---V-DTAITSDC------------------SNVVVTSDFCQ 62 (331)
T ss_dssp CCEEEEEEGGGTEEEEEETTTCCEEEEEECC----CCE---E-EEEECSSS------------------CEEEEEESTTC
T ss_pred CCEEEEEecCCCeEEEEeCcccceeeeEEcc----CCc---c-eEEEcCCC------------------CEEEEEeCCCC
Confidence 3455788899999999999998875555431 111 1 37788877 75554 45589
Q ss_pred cEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCC---cEEEEECCCcceee
Q 021036 95 KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDG---SVRIWDGYIQELQK 171 (318)
Q Consensus 95 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~---~v~iwd~~~~~~~~ 171 (318)
.|.+||..+++. ....+..+..+..+++| ++++++|+++..++ .|.+||+.+++...
T Consensus 63 ~i~~~d~~~~~~-------------~~~~~~~~~~~~~~~~~-------s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~ 122 (331)
T 3u4y_A 63 TLVQIETQLEPP-------------KVVAIQEGQSSMADVDI-------TPDDQFAVTVTGLNHPFNMQSYSFLKNKFIS 122 (331)
T ss_dssp EEEEEECSSSSC-------------EEEEEEECSSCCCCEEE-------CTTSSEEEECCCSSSSCEEEEEETTTTEEEE
T ss_pred eEEEEECCCCce-------------eEEecccCCCCccceEE-------CCCCCEEEEecCCCCcccEEEEECCCCCeEE
Confidence 999999988642 14455566666666999 89999999655553 89999999888766
Q ss_pred eecccccccccceeeeeecccceeEEEEeeccCCCCceEEEE-EeCCCc-EEEeeeccCCCeeeEeeeeecccCceeEEE
Q 021036 172 SAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAV-GKGSGS-FDLWKCDISCNKFDKVGSYNAHDQVVTGLA 249 (318)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~-~~~dg~-i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~ 249 (318)
.+.... ....++|+ |+|+.+++ +..++. |.+|+++..................+..++
T Consensus 123 ~~~~~~---------------~~~~~~~s-----pdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 182 (331)
T 3u4y_A 123 TIPIPY---------------DAVGIAIS-----PNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNIT 182 (331)
T ss_dssp EEECCT---------------TEEEEEEC-----TTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEE
T ss_pred EEECCC---------------CccceEEC-----CCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceE
Confidence 554322 45789999 99975554 456688 999977633221111112223345678999
Q ss_pred EcCCCCEE-EEecCCCcEEEEEecCCce---eeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 250 WAFDGCCL-YSCSQDNFVRSWIFHGNSL---SQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 250 ~~~~~~~l-~s~~~d~~v~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
|+|+|+++ +++..++.|.+||+.++.. ....... ..+..++|+|||++|+++
T Consensus 183 ~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~---------------~~~~~~~~spdg~~l~v~ 238 (331)
T 3u4y_A 183 FTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN---------------NLPGTIVVSRDGSTVYVL 238 (331)
T ss_dssp ECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS---------------SCCCCEEECTTSSEEEEE
T ss_pred ECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC---------------CCCceEEECCCCCEEEEE
Confidence 99999955 5555789999999987665 3222111 255789999999977654
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.85 E-value=9.4e-20 Score=159.26 Aligned_cols=168 Identities=13% Similarity=0.097 Sum_probs=119.7
Q ss_pred ccccccCCCCCccEEE----EecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCC-C
Q 021036 73 YPVPQNGSSNWFSILA----VGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNP-Q 147 (318)
Q Consensus 73 ~~v~~~~~s~~~~~l~----~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~-~ 147 (318)
.+|.+++|++++++|+ +|+.|+.|+|||+.++.... .........+..+.+|...|.+++| +++ +
T Consensus 93 ~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~---~~~~~~~~~~~~~~~h~~~V~~v~~-------~p~~~ 162 (434)
T 2oit_A 93 FPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEA---KQQKRPFAYHKLLKDAGGMVIDMKW-------NPTVP 162 (434)
T ss_dssp SCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTT---CSSCCCSEEEECCCSGGGSEEEEEE-------CSSCT
T ss_pred CcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCC---cCCcceeeeeeccCCCCCceEEEEE-------CCCCC
Confidence 4556666666669999 89999999999997631000 0000001234567789999999999 666 7
Q ss_pred cEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeecc
Q 021036 148 VLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDI 227 (318)
Q Consensus 148 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 227 (318)
.+|++++.||+|++||++++........ |...|++++|+ |+|++|++|+.||.|++| +.
T Consensus 163 ~~las~s~Dg~v~iwD~~~~~~~~~~~~--------------~~~~v~~v~ws-----pdg~~lasgs~dg~v~iw--d~ 221 (434)
T 2oit_A 163 SMVAVCLADGSIAVLQVTETVKVCATLP--------------STVAVTSVCWS-----PKGKQLAVGKQNGTVVQY--LP 221 (434)
T ss_dssp TEEEEEETTSCEEEEEESSSEEEEEEEC--------------GGGCEEEEEEC-----TTSSCEEEEETTSCEEEE--CT
T ss_pred CEEEEEECCCeEEEEEcCCCcceeeccC--------------CCCceeEEEEc-----CCCCEEEEEcCCCcEEEE--cc
Confidence 8999999999999999998754433322 44589999999 999999999999999999 44
Q ss_pred CCCeeeEeeeeec-------ccCceeEEEEcCCCCEEEE-ecCCC------cEEEEEecCC
Q 021036 228 SCNKFDKVGSYNA-------HDQVVTGLAWAFDGCCLYS-CSQDN------FVRSWIFHGN 274 (318)
Q Consensus 228 ~~~~~~~~~~~~~-------h~~~v~~~~~~~~~~~l~s-~~~d~------~v~iwd~~~~ 274 (318)
+. + ....+.. |...|.+++|++++.++++ .+.|| .+++|+++..
T Consensus 222 ~~-~--~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 222 TL-Q--EKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp TC-C--EEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred CC-c--ccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 42 2 2222322 2347999999998877654 33443 3899999764
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.2e-19 Score=148.16 Aligned_cols=210 Identities=16% Similarity=0.117 Sum_probs=147.7
Q ss_pred EEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEEEE
Q 021036 21 VAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWR 100 (318)
Q Consensus 21 ~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~ 100 (318)
..++.|+++++||+.+++...... +... +.+++|+|++ ++|++++ ++.|++||
T Consensus 16 ~~~~~~~~i~~~d~~~~~~~~~~~-----~~~~---v~~~~~spdg------------------~~l~~~~-~~~i~~~d 68 (297)
T 2ojh_A 16 PGGSMRSSIEIFNIRTRKMRVVWQ-----TPEL---FEAPNWSPDG------------------KYLLLNS-EGLLYRLS 68 (297)
T ss_dssp --CCCCEEEEEEETTTTEEEEEEE-----ESSC---CEEEEECTTS------------------SEEEEEE-TTEEEEEE
T ss_pred CCCCcceeEEEEeCCCCceeeecc-----CCcc---eEeeEECCCC------------------CEEEEEc-CCeEEEEe
Confidence 346789999999998876532221 2222 4457888877 8888876 78999999
Q ss_pred ccC-CccccccccccCCceeEEeeeccc-cccEEEEEeeeecCCCCCCCcEEEEEe--CCCcEEEEEC--CCcceeeeec
Q 021036 101 ICV-PKCYSVEDCKVPTTAVLIGLFQAH-NSWITSISLAVLSSDSSNPQVLLVTGS--SDGSVRIWDG--YIQELQKSAE 174 (318)
Q Consensus 101 ~~~-~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~p~~~~~~~~~~~l~s~~--~d~~v~iwd~--~~~~~~~~~~ 174 (318)
+.+ ++. ......+ ...+.+++| ++++++|++++ .++...||.+ .+++ ...+.
T Consensus 69 ~~~~~~~--------------~~~~~~~~~~~~~~~~~-------spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~ 126 (297)
T 2ojh_A 69 LAGDPSP--------------EKVDTGFATICNNDHGI-------SPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMT 126 (297)
T ss_dssp SSSCCSC--------------EECCCTTCCCBCSCCEE-------CTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECC
T ss_pred CCCCCCc--------------eEeccccccccccceEE-------CCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEee
Confidence 987 652 2233344 467899999 89999999998 3345555554 4443 22222
Q ss_pred ccccccccceeeeeecccceeEEEEeeccCCCCceEEE-EEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCC
Q 021036 175 AHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLA-VGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFD 253 (318)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~-~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 253 (318)
. ...+..++|+ |+++.|+ +++.++.+++|+++..++. ...+..+...+.+++|+|+
T Consensus 127 ~---------------~~~~~~~~~s-----pdg~~l~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~s~d 183 (297)
T 2ojh_A 127 K---------------NLPSYWHGWS-----PDGKSFTYCGIRDQVFDIYSMDIDSGV---ETRLTHGEGRNDGPDYSPD 183 (297)
T ss_dssp S---------------SSSEEEEEEC-----TTSSEEEEEEEETTEEEEEEEETTTCC---EEECCCSSSCEEEEEECTT
T ss_pred c---------------CCCccceEEC-----CCCCEEEEEECCCCceEEEEEECCCCc---ceEcccCCCccccceECCC
Confidence 1 1147788998 9998777 7788999999988776654 2345567788999999999
Q ss_pred CCEEEEec-CCCcEEEEEecC--CceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 254 GCCLYSCS-QDNFVRSWIFHG--NSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 254 ~~~l~s~~-~d~~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
|++|+.++ .++.+++|++.. +....+ ..|...+..++|+|+|++|+++.
T Consensus 184 g~~l~~~~~~~~~~~i~~~~~~~~~~~~~---------------~~~~~~~~~~~~s~dg~~l~~~~ 235 (297)
T 2ojh_A 184 GRWIYFNSSRTGQMQIWRVRVDGSSVERI---------------TDSAYGDWFPHPSPSGDKVVFVS 235 (297)
T ss_dssp SSEEEEEECTTSSCEEEEEETTSSCEEEC---------------CCCSEEEEEEEECTTSSEEEEEE
T ss_pred CCEEEEEecCCCCccEEEECCCCCCcEEE---------------ecCCcccCCeEECCCCCEEEEEE
Confidence 99877665 589999999863 233222 22345789999999999988753
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-18 Score=147.24 Aligned_cols=227 Identities=14% Similarity=0.082 Sum_probs=142.5
Q ss_pred eEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCC-CcEEE
Q 021036 20 TVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRS-GKVSL 98 (318)
Q Consensus 20 ~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~d-g~i~i 98 (318)
+++++.|+.+++||+........+. ...+... +..++|+|++ ++|++++.+ +.|++
T Consensus 8 ~~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~spdg------------------~~l~~~~~~~~~v~~ 64 (343)
T 1ri6_A 8 YIASPESQQIHVWNLNHEGALTLTQ--VVDVPGQ---VQPMVVSPDK------------------RYLYVGVRPEFRVLA 64 (343)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEE--EEECSSC---CCCEEECTTS------------------SEEEEEETTTTEEEE
T ss_pred EEeCCCCCeEEEEEECCCCcEEEee--eEecCCC---CceEEECCCC------------------CEEEEeecCCCeEEE
Confidence 4555789999999996422111111 1112222 3336777766 877777766 99999
Q ss_pred EEcc--CCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeC-CCcEEEEECCCc---ceeee
Q 021036 99 WRIC--VPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSS-DGSVRIWDGYIQ---ELQKS 172 (318)
Q Consensus 99 w~~~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~-d~~v~iwd~~~~---~~~~~ 172 (318)
|++. +++ .+.+..+..+. .+..++| ++++++|++++. ++.|.+||+..+ +....
T Consensus 65 ~~~~~~~~~------------~~~~~~~~~~~-~~~~~~~-------s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~ 124 (343)
T 1ri6_A 65 YRIAPDDGA------------LTFAAESALPG-SLTHIST-------DHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDV 124 (343)
T ss_dssp EEECTTTCC------------EEEEEEEECSS-CCSEEEE-------CTTSSEEEEEETTTTEEEEEEEETTEEEEEEEE
T ss_pred EEecCCCCc------------eeeccccccCC-CCcEEEE-------cCCCCEEEEEecCCCeEEEEECCCCcccccccc
Confidence 9997 443 23444454444 7889999 899998876665 889999999532 22222
Q ss_pred ecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe-CCCcEEEeeeccCCCeeeEee--eeec-ccCceeEE
Q 021036 173 AEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK-GSGSFDLWKCDISCNKFDKVG--SYNA-HDQVVTGL 248 (318)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~--~~~~-h~~~v~~~ 248 (318)
+.. ...+.+++|+ |+++.+++++ .++.|++|+++.. ++...+. .+.. ....+..+
T Consensus 125 ~~~---------------~~~~~~~~~s-----~dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~ 183 (343)
T 1ri6_A 125 VEG---------------LDGCHSANIS-----PDNRTLWVPALKQDRICLFTVSDD-GHLVAQDPAEVTTVEGAGPRHM 183 (343)
T ss_dssp ECC---------------CTTBCCCEEC-----TTSSEEEEEEGGGTEEEEEEECTT-SCEEEEEEEEEECSTTCCEEEE
T ss_pred ccC---------------CCCceEEEEC-----CCCCEEEEecCCCCEEEEEEecCC-CceeeecccccccCCCCCcceE
Confidence 221 1257788999 9998888777 8999999965421 4332322 2332 33478889
Q ss_pred EEcCCCCEEE-EecCCCcEEEEEecC--CceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 249 AWAFDGCCLY-SCSQDNFVRSWIFHG--NSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 249 ~~~~~~~~l~-s~~~d~~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
+|+|++++++ ++..++.|.+|++.. +...........+ ........+..++|+|+|++|+++
T Consensus 184 ~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~------~~~~~~~~~~~i~~s~dg~~l~v~ 248 (343)
T 1ri6_A 184 VFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMP------ENFSDTRWAADIHITPDGRHLYAC 248 (343)
T ss_dssp EECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSC------TTCCSCCCEEEEEECTTSSEEEEE
T ss_pred EECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccC------ccccccCCccceEECCCCCEEEEE
Confidence 9999999665 445889999999953 3332111100000 000112356789999999887643
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.7e-19 Score=147.65 Aligned_cols=219 Identities=11% Similarity=-0.027 Sum_probs=146.9
Q ss_pred ceEEeeCCCceeEeecCC-CCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEec--CCCc
Q 021036 19 PTVAASKSKGNSITKIPS-NCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGG--RSGK 95 (318)
Q Consensus 19 ~~~t~s~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~--~dg~ 95 (318)
.++++ .++.+.+||+.+ ++........ .... +.+++|+|++ ++|++++ .++.
T Consensus 55 ~l~~~-~~~~i~~~d~~~~~~~~~~~~~~---~~~~---~~~~~~spdg------------------~~l~~~~~~~~~~ 109 (297)
T 2ojh_A 55 YLLLN-SEGLLYRLSLAGDPSPEKVDTGF---ATIC---NNDHGISPDG------------------ALYAISDKVEFGK 109 (297)
T ss_dssp EEEEE-ETTEEEEEESSSCCSCEECCCTT---CCCB---CSCCEECTTS------------------SEEEEEECTTTSS
T ss_pred EEEEE-cCCeEEEEeCCCCCCceEecccc---cccc---ccceEECCCC------------------CEEEEEEeCCCCc
Confidence 34444 488999999988 6553322110 1111 3346777776 8998888 4456
Q ss_pred EEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEE-EEeCCCcEEEEECCC-cceeeee
Q 021036 96 VSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLV-TGSSDGSVRIWDGYI-QELQKSA 173 (318)
Q Consensus 96 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~-s~~~d~~v~iwd~~~-~~~~~~~ 173 (318)
.+||.++... . ....+..+ ..+..++| ++++++|+ +++.|+.+++|+++. +.....+
T Consensus 110 ~~l~~~~~~~------------~-~~~~~~~~-~~~~~~~~-------spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~ 168 (297)
T 2ojh_A 110 SAIYLLPSTG------------G-TPRLMTKN-LPSYWHGW-------SPDGKSFTYCGIRDQVFDIYSMDIDSGVETRL 168 (297)
T ss_dssp CEEEEEETTC------------C-CCEECCSS-SSEEEEEE-------CTTSSEEEEEEEETTEEEEEEEETTTCCEEEC
T ss_pred ceEEEEECCC------------C-ceEEeecC-CCccceEE-------CCCCCEEEEEECCCCceEEEEEECCCCcceEc
Confidence 6666664321 1 12233333 34889999 89998777 788899999998642 2222222
Q ss_pred cccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe-CCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcC
Q 021036 174 EAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK-GSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAF 252 (318)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 252 (318)
.. +...+.+++|+ |+++.|+.++ .++.+++|+++..... +..+..|...+..++|+|
T Consensus 169 ~~--------------~~~~~~~~~~s-----~dg~~l~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~s~ 226 (297)
T 2ojh_A 169 TH--------------GEGRNDGPDYS-----PDGRWIYFNSSRTGQMQIWRVRVDGSS---VERITDSAYGDWFPHPSP 226 (297)
T ss_dssp CC--------------SSSCEEEEEEC-----TTSSEEEEEECTTSSCEEEEEETTSSC---EEECCCCSEEEEEEEECT
T ss_pred cc--------------CCCccccceEC-----CCCCEEEEEecCCCCccEEEECCCCCC---cEEEecCCcccCCeEECC
Confidence 21 23478899999 9999877666 5999999987765544 345666777899999999
Q ss_pred CCCEEEEecCC-----------CcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 253 DGCCLYSCSQD-----------NFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 253 ~~~~l~s~~~d-----------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
+|++|++++.+ +.|++||+.+++...+.... +|...+..++|+||+++|+++.
T Consensus 227 dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~------------~~~~~~~~~~~spdg~~l~~~~ 290 (297)
T 2ojh_A 227 SGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLF------------GGQGTMNSPNWSPDGDEFAYVR 290 (297)
T ss_dssp TSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEE------------ESTTTSCSCCBCTTSSEEEEEE
T ss_pred CCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccC------------CCCcccccceECCCCCEEEEEE
Confidence 99999888766 56999999887654332110 1223678899999999988763
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=4.1e-18 Score=143.86 Aligned_cols=228 Identities=13% Similarity=0.085 Sum_probs=143.8
Q ss_pred cceEEeeCC-CceeEeecC--CCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEe-cCC
Q 021036 18 HPTVAASKS-KGNSITKIP--SNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVG-GRS 93 (318)
Q Consensus 18 ~~~~t~s~d-~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g-~~d 93 (318)
..+++++.+ +.+++|++. +++....... .... ....++|+|++ ++|+++ ..+
T Consensus 50 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~s~dg------------------~~l~~~~~~~ 105 (343)
T 1ri6_A 50 RYLYVGVRPEFRVLAYRIAPDDGALTFAAES---ALPG---SLTHISTDHQG------------------QFVFVGSYNA 105 (343)
T ss_dssp SEEEEEETTTTEEEEEEECTTTCCEEEEEEE---ECSS---CCSEEEECTTS------------------SEEEEEETTT
T ss_pred CEEEEeecCCCeEEEEEecCCCCceeecccc---ccCC---CCcEEEEcCCC------------------CEEEEEecCC
Confidence 335666655 999999987 4442211111 1111 23347777777 766555 458
Q ss_pred CcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEe-CCCcEEEEECCC-cceee
Q 021036 94 GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS-SDGSVRIWDGYI-QELQK 171 (318)
Q Consensus 94 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~-~d~~v~iwd~~~-~~~~~ 171 (318)
+.|.+|++.++.. .+....+..+ ..+.+++| ++++++|++++ .++.|.+||+.+ ++...
T Consensus 106 ~~i~~~d~~~~~~-----------~~~~~~~~~~-~~~~~~~~-------s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~ 166 (343)
T 1ri6_A 106 GNVSVTRLEDGLP-----------VGVVDVVEGL-DGCHSANI-------SPDNRTLWVPALKQDRICLFTVSDDGHLVA 166 (343)
T ss_dssp TEEEEEEEETTEE-----------EEEEEEECCC-TTBCCCEE-------CTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred CeEEEEECCCCcc-----------ccccccccCC-CCceEEEE-------CCCCCEEEEecCCCCEEEEEEecCCCceee
Confidence 8999999953221 2344444443 45889999 89998888877 899999999987 54332
Q ss_pred ee--cccccccccceeeeeecccceeEEEEeeccCCCCceEEEEE-eCCCcEEEeeeccCCCeeeEeeeeec----c--c
Q 021036 172 SA--EAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVG-KGSGSFDLWKCDISCNKFDKVGSYNA----H--D 242 (318)
Q Consensus 172 ~~--~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~----h--~ 242 (318)
.. ... ......+..++|+ |+++.++++ ..++.|.+|+++..+++......... + .
T Consensus 167 ~~~~~~~-----------~~~~~~~~~~~~~-----pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 230 (343)
T 1ri6_A 167 QDPAEVT-----------TVEGAGPRHMVFH-----PNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDT 230 (343)
T ss_dssp EEEEEEE-----------CSTTCCEEEEEEC-----TTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSC
T ss_pred ecccccc-----------cCCCCCcceEEEC-----CCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCcccccc
Confidence 11 000 0112356789999 999866555 48899999976554554333333321 1 2
Q ss_pred CceeEEEEcCCCCEEE-EecCCCcEEEEEec--CCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 243 QVVTGLAWAFDGCCLY-SCSQDNFVRSWIFH--GNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 243 ~~v~~~~~~~~~~~l~-s~~~d~~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
..+..++|+|+|++|+ ++..++.|.+||+. ++....+...+. + ..+.+++|+|+|++|+++.
T Consensus 231 ~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~------------~-~~~~~~~~s~dg~~l~~~~ 295 (343)
T 1ri6_A 231 RWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT------------E-TQPRGFNVDHSGKYLIAAG 295 (343)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC------------S-SSCCCEEECTTSSEEEEEC
T ss_pred CCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecC------------C-CccceEEECCCCCEEEEec
Confidence 3566899999998776 55689999999998 333332221111 1 1367899999999877653
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=6.3e-18 Score=143.39 Aligned_cols=225 Identities=10% Similarity=-0.021 Sum_probs=155.3
Q ss_pred ccceEEeeCCCceeEeecCCCCCCCceecchhccc--cccccceeeeecccccCCCCcccccccCCCCCccEEEEec--C
Q 021036 17 THPTVAASKSKGNSITKIPSNCCLPLITADQYASR--SAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGG--R 92 (318)
Q Consensus 17 ~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~--~ 92 (318)
....++...++.+.+||..+++.+..+........ ........++|+|++ +++++++ .
T Consensus 101 ~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg------------------~~l~~~~~~~ 162 (353)
T 3vgz_A 101 QTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDAT------------------NTVYISGIGK 162 (353)
T ss_dssp TEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTT------------------TEEEEEEESS
T ss_pred CEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCC------------------CEEEEEecCC
Confidence 33456667789999999998877655543211000 000112346777776 7666654 5
Q ss_pred CCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeee
Q 021036 93 SGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKS 172 (318)
Q Consensus 93 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~ 172 (318)
++.|.+||.++++ .+..+..+...+.++.| ++++++|++++.++.|.+||..+++....
T Consensus 163 ~~~i~~~d~~~~~--------------~~~~~~~~~~~~~~~~~-------s~dg~~l~~~~~~~~i~~~d~~~~~~~~~ 221 (353)
T 3vgz_A 163 ESVIWVVDGGNIK--------------LKTAIQNTGKMSTGLAL-------DSEGKRLYTTNADGELITIDTADNKILSR 221 (353)
T ss_dssp SCEEEEEETTTTE--------------EEEEECCCCTTCCCCEE-------ETTTTEEEEECTTSEEEEEETTTTEEEEE
T ss_pred CceEEEEcCCCCc--------------eEEEecCCCCccceEEE-------CCCCCEEEEEcCCCeEEEEECCCCeEEEE
Confidence 8899999998753 44555545566888999 89999999999999999999999887766
Q ss_pred ecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeC-CCcEEEeeeccCCCeeeEeeeeecccCceeEEEEc
Q 021036 173 AEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKG-SGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWA 251 (318)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 251 (318)
+..... .+...+..++|+ |+++.+++++. ++.|.+| |..+++ .+..+.... ...++|+
T Consensus 222 ~~~~~~----------~~~~~~~~~~~s-----~dg~~l~~~~~~~~~v~~~--d~~~~~--~~~~~~~~~--~~~~~~s 280 (353)
T 3vgz_A 222 KKLLDD----------GKEHFFINISLD-----TARQRAFITDSKAAEVLVV--DTRNGN--ILAKVAAPE--SLAVLFN 280 (353)
T ss_dssp EECCCS----------SSCCCEEEEEEE-----TTTTEEEEEESSSSEEEEE--ETTTCC--EEEEEECSS--CCCEEEE
T ss_pred EEcCCC----------CCCcccceEEEC-----CCCCEEEEEeCCCCEEEEE--ECCCCc--EEEEEEcCC--CceEEEC
Confidence 543211 123356789999 89987766654 5899999 555655 344444322 2579999
Q ss_pred CCCCEEE-EecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 252 FDGCCLY-SCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 252 ~~~~~l~-s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
|+|++++ +...++.|.+||+.+++........ ..+.+++|+|||++|+++
T Consensus 281 ~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~---------------~~~~~~~~s~dg~~l~v~ 331 (353)
T 3vgz_A 281 PARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP---------------THPNSLALSADGKTLYVS 331 (353)
T ss_dssp TTTTEEEEEETTTTEEEEEETTTTEEEEEEECC---------------SEEEEEEECTTSCEEEEE
T ss_pred CCCCEEEEEECCCCeEEEEECCCCeEEEEEecC---------------CCCCeEEEcCCCCEEEEE
Confidence 9999554 4557899999999887765433222 256899999999966654
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-17 Score=141.39 Aligned_cols=229 Identities=16% Similarity=0.131 Sum_probs=144.3
Q ss_pred eEEeeC---CCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEec-CCCc
Q 021036 20 TVAASK---SKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGG-RSGK 95 (318)
Q Consensus 20 ~~t~s~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~ 95 (318)
+++++. ++.+.+||+.+++....... ..+... ...++|+|++ ++|++++ .++.
T Consensus 53 l~~~~~~~~~~~v~~~~~~~g~~~~~~~~--~~~~~~---p~~~a~spdg------------------~~l~~~~~~~~~ 109 (347)
T 3hfq_A 53 LYSVDKEDDEGGIAAWQIDGQTAHKLNTV--VAPGTP---PAYVAVDEAR------------------QLVYSANYHKGT 109 (347)
T ss_dssp EEEEEEETTEEEEEEEEEETTEEEEEEEE--EEESCC---CSEEEEETTT------------------TEEEEEETTTTE
T ss_pred EEEEEecCCCceEEEEEecCCcEEEeeee--ecCCCC---CEEEEECCCC------------------CEEEEEeCCCCE
Confidence 555554 68999999976543111110 011111 2336777776 8777776 7899
Q ss_pred EEEEEccCCccccccccccCCceeEEeeecc---------ccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECC-
Q 021036 96 VSLWRICVPKCYSVEDCKVPTTAVLIGLFQA---------HNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGY- 165 (318)
Q Consensus 96 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~---------h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~- 165 (318)
|.+|++..... ...+..+.. +...+.+++| +++|+++++...++.|.+|++.
T Consensus 110 v~v~~~~~~g~-----------~~~~~~~~~~~~~p~~~~~~~~~~~~~~-------spdg~l~v~~~~~~~v~~~~~~~ 171 (347)
T 3hfq_A 110 AEVMKIAADGA-----------LTLTDTVQHSGHGPRPEQDGSHIHYTDL-------TPDNRLAVIDLGSDKVYVYNVSD 171 (347)
T ss_dssp EEEEEECTTSC-----------EEEEEEEECCCCCSSTTCSSCCEEEEEE-------CTTSCEEEEETTTTEEEEEEECT
T ss_pred EEEEEeCCCCC-----------eeecceeecCCCCCCccccCCCceEEEE-------CCCCcEEEEeCCCCEEEEEEECC
Confidence 99999963211 222222221 2235889999 8999966666778999999998
Q ss_pred CcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEE-EeCCCcEEEeeeccCCCeeeEeeeeeccc--
Q 021036 166 IQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAV-GKGSGSFDLWKCDISCNKFDKVGSYNAHD-- 242 (318)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~-~~~dg~i~vw~~~~~~~~~~~~~~~~~h~-- 242 (318)
+++........ ......+..++|+ |+|+++++ +..++.|.+|+++..+++...+..+....
T Consensus 172 ~g~~~~~~~~~-----------~~~g~~p~~~~~s-----pdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~ 235 (347)
T 3hfq_A 172 AGQLSEQSVLT-----------MEAGFGPRHLVFS-----PDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPAD 235 (347)
T ss_dssp TSCEEEEEEEE-----------CCTTCCEEEEEEC-----TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTT
T ss_pred CCcEEEeeeEE-----------cCCCCCCceEEEC-----CCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCC
Confidence 44332211100 0112246679999 99985555 56788999998776566654554444332
Q ss_pred ----CceeEEEEcCCCCEE-EEecCCCcEEEEEecC-CceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 243 ----QVVTGLAWAFDGCCL-YSCSQDNFVRSWIFHG-NSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 243 ----~~v~~~~~~~~~~~l-~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
..+..++|+|+|++| ++...++.|.+|++.. +....+...+ .+...+.+++|+|||++|+++
T Consensus 236 ~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~------------~~~~~~~~~~~spdg~~l~v~ 303 (347)
T 3hfq_A 236 YTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIS------------TEGDFPRDFDLDPTEAFVVVV 303 (347)
T ss_dssp CCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEE------------CSSSCCCEEEECTTSSEEEEE
T ss_pred CCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEe------------cCCCCcCeEEECCCCCEEEEE
Confidence 347889999999977 5556789999999963 2222221111 112256899999999988776
Q ss_pred e
Q 021036 317 Q 317 (318)
Q Consensus 317 ~ 317 (318)
.
T Consensus 304 ~ 304 (347)
T 3hfq_A 304 N 304 (347)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.81 E-value=4.1e-19 Score=165.22 Aligned_cols=227 Identities=8% Similarity=-0.066 Sum_probs=149.8
Q ss_pred eEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCC------
Q 021036 20 TVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRS------ 93 (318)
Q Consensus 20 ~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~d------ 93 (318)
++..+.|+++++||+.+++....+.... .....+..++|+|++ ++|++++.+
T Consensus 30 ~~~~~~dg~i~~~d~~~g~~~~~~~~~~----~~~~~v~~~~~SpDg------------------~~l~~~~~~~~~~~~ 87 (723)
T 1xfd_A 30 FIYREQKGTVRLWNVETNTSTVLIEGKK----IESLRAIRYEISPDR------------------EYALFSYNVEPIYQH 87 (723)
T ss_dssp BCCCCSSSCEEEBCGGGCCCEEEECTTT----TTTTTCSEEEECTTS------------------SEEEEEESCCCCSSS
T ss_pred EEEEeCCCCEEEEECCCCcEEEEecccc----ccccccceEEECCCC------------------CEEEEEecCccceee
Confidence 4455789999999999987654443211 110123447777776 888888764
Q ss_pred ---CcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCccee
Q 021036 94 ---GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQ 170 (318)
Q Consensus 94 ---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 170 (318)
+.+.+||+.+++. +.+.....|...+..++| +|+|++|+.++. +.|++||+.+++..
T Consensus 88 ~~~~~i~~~d~~~~~~------------~~l~~~~~~~~~~~~~~~-------SPdG~~la~~~~-~~i~~~~~~~g~~~ 147 (723)
T 1xfd_A 88 SYTGYYVLSKIPHGDP------------QSLDPPEVSNAKLQYAGW-------GPKGQQLIFIFE-NNIYYCAHVGKQAI 147 (723)
T ss_dssp CCCSEEEEEESSSCCC------------EECCCTTCCSCCCSBCCB-------CSSTTCEEEEET-TEEEEESSSSSCCE
T ss_pred cceeeEEEEECCCCce------------EeccCCccccccccccEE-------CCCCCEEEEEEC-CeEEEEECCCCceE
Confidence 7888999998652 223333455566889999 999999999886 79999999988765
Q ss_pred eeecccccccccceeeeeec---------ccceeEEEEeeccCCCCceEEEEEeCCC-----------------------
Q 021036 171 KSAEAHCVPFSLLKEVVTVN---------TVPISVLSLILPVQSPRLMLLAVGKGSG----------------------- 218 (318)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~---------~~~v~~l~~~~~~~~~~~~~l~~~~~dg----------------------- 218 (318)
.....+.... +..+. ...+..++|+ |||+.|++++.++
T Consensus 148 ~~~~~~~~~~-----~~~g~~~~v~~ee~~~~~~~~~~S-----pDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (723)
T 1xfd_A 148 RVVSTGKEGV-----IYNGLSDWLYEEEILKTHIAHWWS-----PDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYH 217 (723)
T ss_dssp EEECCCBTTT-----EEEEECCHHHHHTTSSSSEEEEEC-----TTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEE
T ss_pred EEecCCCCCc-----eECcccceeEEEEeccCcceEEEC-----CCCCEEEEEEECCCccceEEeeccCCcCCCcceecc
Confidence 5443322100 00000 1133789999 9999999887543
Q ss_pred -----------cEEEeeeccCCCeeeEeeeeec------ccCceeEEEEcCCCCEEEEecC----CCcEEEEEecCCcee
Q 021036 219 -----------SFDLWKCDISCNKFDKVGSYNA------HDQVVTGLAWAFDGCCLYSCSQ----DNFVRSWIFHGNSLS 277 (318)
Q Consensus 219 -----------~i~vw~~~~~~~~~~~~~~~~~------h~~~v~~~~~~~~~~~l~s~~~----d~~v~iwd~~~~~~~ 277 (318)
.|++| +..+++ ....+.. +...+..++|+|||+++++.+. +..|++||+.+++..
T Consensus 218 ~~~~G~~~~~~~l~~~--d~~~~~--~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~ 293 (723)
T 1xfd_A 218 YPKAGSENPSISLHVI--GLNGPT--HDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT 293 (723)
T ss_dssp CCBTTSCCCEEEEEEE--ESSSSC--CCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE
T ss_pred CCCCCCCCCeeEEEEE--ECCCCc--eeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcce
Confidence 67788 454544 1223333 3567899999999998876643 367999999887765
Q ss_pred eeecCCCCCCccccccCCCcceee----eEEEEcCCCcEEEE
Q 021036 278 QVSIPTNTPGLQSCTDLPDAFVSC----LGMAVSPGNLVVAM 315 (318)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~h~~~v----~~v~~sp~~~~l~~ 315 (318)
.+...... ..+ ..++|+|||+.|+.
T Consensus 294 ~~~~~~~~-------------~~~~~~~~~~~~spdg~~l~~ 322 (723)
T 1xfd_A 294 KKHEDESE-------------AWLHRQNEEPVFSKDGRKFFF 322 (723)
T ss_dssp EEEEEECS-------------SCCCCCCCCCEECTTSCSEEE
T ss_pred EEEEeccC-------------CEEeccCCCceEcCCCCeEEE
Confidence 43211100 122 37899999997764
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.81 E-value=7e-18 Score=142.04 Aligned_cols=213 Identities=13% Similarity=0.038 Sum_probs=144.7
Q ss_pred ceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccE-EEEecCCCcEE
Q 021036 19 PTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSI-LAVGGRSGKVS 97 (318)
Q Consensus 19 ~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~-l~~g~~dg~i~ 97 (318)
.+++++.++.+++||+.+++.+..+.... ... ....++|+|++ +. ++++..++.|.
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~--~~~~~~~s~dg------------------~~l~v~~~~~~~v~ 59 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKVITIAD---AGP--TPMVPMVAPGG------------------RIAYATVNKSESLV 59 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEECTT---CTT--CCCCEEECTTS------------------SEEEEEETTTTEEE
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEEEcCC---CCC--CccceEEcCCC------------------CEEEEEeCCCCeEE
Confidence 47889999999999999887655544211 000 02237777776 55 56667789999
Q ss_pred EEEccCCccccccccccCCceeEEeeecc-----ccccEEEEEeeeecCCCCCCCcEEEEEe------------CCCcEE
Q 021036 98 LWRICVPKCYSVEDCKVPTTAVLIGLFQA-----HNSWITSISLAVLSSDSSNPQVLLVTGS------------SDGSVR 160 (318)
Q Consensus 98 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~~~~~p~~~~~~~~~~~l~s~~------------~d~~v~ 160 (318)
+||+.+++. +..+.. |...+.+++| +++|++|+++. .++.|.
T Consensus 60 ~~d~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~-------s~dg~~l~~~~~~~~~~~~~~~~~~~~i~ 118 (337)
T 1pby_B 60 KIDLVTGET--------------LGRIDLSTPEERVKSLFGAAL-------SPDGKTLAIYESPVRLELTHFEVQPTRVA 118 (337)
T ss_dssp EEETTTCCE--------------EEEEECCBTTEEEECTTCEEE-------CTTSSEEEEEEEEEEECSSCEEECCCEEE
T ss_pred EEECCCCCe--------------EeeEEcCCcccccccccceEE-------CCCCCEEEEEecccccccccccccCceEE
Confidence 999988652 233321 1235678999 89998888886 579999
Q ss_pred EEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEe-----
Q 021036 161 IWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKV----- 235 (318)
Q Consensus 161 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~----- 235 (318)
+||+.+++....+.... .+..++|+ |+++.++++ ++.|++|| ..+++....
T Consensus 119 v~d~~~~~~~~~~~~~~---------------~~~~~~~s-----~dg~~l~~~--~~~i~~~d--~~~~~~~~~~~~~~ 174 (337)
T 1pby_B 119 LYDAETLSRRKAFEAPR---------------QITMLAWA-----RDGSKLYGL--GRDLHVMD--PEAGTLVEDKPIQS 174 (337)
T ss_dssp EEETTTTEEEEEEECCS---------------SCCCEEEC-----TTSSCEEEE--SSSEEEEE--TTTTEEEEEECSTT
T ss_pred EEECCCCcEEEEEeCCC---------------CcceeEEC-----CCCCEEEEe--CCeEEEEE--CCCCcEeeeeeccc
Confidence 99999887665554321 45677888 888877777 57888884 333331100
Q ss_pred -----------------------------------------------------------eeeecccCceeEEEEcCCCCE
Q 021036 236 -----------------------------------------------------------GSYNAHDQVVTGLAWAFDGCC 256 (318)
Q Consensus 236 -----------------------------------------------------------~~~~~h~~~v~~~~~~~~~~~ 256 (318)
..+..+...+.+++|+|+|++
T Consensus 175 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 254 (337)
T 1pby_B 175 WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTR 254 (337)
T ss_dssp TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred cCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCE
Confidence 001122234567899999998
Q ss_pred EEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 257 LYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 257 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
++++ ++.|.+||+.+++......... .+.+++|+|||++|+++
T Consensus 255 l~~~--~~~v~~~d~~~~~~~~~~~~~~---------------~~~~~~~s~dg~~l~~~ 297 (337)
T 1pby_B 255 AFGA--YNVLESFDLEKNASIKRVPLPH---------------SYYSVNVSTDGSTVWLG 297 (337)
T ss_dssp EEEE--ESEEEEEETTTTEEEEEEECSS---------------CCCEEEECTTSCEEEEE
T ss_pred EEEe--CCeEEEEECCCCcCcceecCCC---------------ceeeEEECCCCCEEEEE
Confidence 8887 7899999998876544322221 45799999999988765
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.7e-17 Score=148.93 Aligned_cols=204 Identities=13% Similarity=0.056 Sum_probs=145.8
Q ss_pred ccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcE
Q 021036 17 THPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKV 96 (318)
Q Consensus 17 ~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i 96 (318)
...+++++.|++|.+||..+++++..+.... . +..++++|++ ++|++++.|+.|
T Consensus 149 ~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~---~-----~~~v~~spdg------------------~~l~v~~~d~~V 202 (543)
T 1nir_A 149 NLFSVTLRDAGQIALVDGDSKKIVKVIDTGY---A-----VHISRMSASG------------------RYLLVIGRDARI 202 (543)
T ss_dssp GEEEEEEGGGTEEEEEETTTCCEEEEEECST---T-----EEEEEECTTS------------------CEEEEEETTSEE
T ss_pred CEEEEEEcCCCeEEEEECCCceEEEEEecCc---c-----cceEEECCCC------------------CEEEEECCCCeE
Confidence 3457888999999999999998766654311 1 2236677776 999999999999
Q ss_pred EEEEc--cCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCC----CCcEEEEEeC-CCcEEEEECCCcce
Q 021036 97 SLWRI--CVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSN----PQVLLVTGSS-DGSVRIWDGYIQEL 169 (318)
Q Consensus 97 ~iw~~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~----~~~~l~s~~~-d~~v~iwd~~~~~~ 169 (318)
++||+ .++ +.+..+.. ...+..++| ++ +|++|++++. +++|.+||..++++
T Consensus 203 ~v~D~~~~t~--------------~~~~~i~~-g~~p~~va~-------sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~ 260 (543)
T 1nir_A 203 DMIDLWAKEP--------------TKVAEIKI-GIEARSVES-------SKFKGYEDRYTIAGAYWPPQFAIMDGETLEP 260 (543)
T ss_dssp EEEETTSSSC--------------EEEEEEEC-CSEEEEEEE-------CCSTTCTTTEEEEEEEESSEEEEEETTTCCE
T ss_pred EEEECcCCCC--------------cEEEEEec-CCCcceEEe-------CCCcCCCCCEEEEEEccCCeEEEEecccccc
Confidence 99999 663 34555653 456799999 88 9999998885 89999999999988
Q ss_pred eeeecccccccccceeeeeecccceeEEEEeeccCCCCc-eEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEE
Q 021036 170 QKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRL-MLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGL 248 (318)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~ 248 (318)
+..+......... ........+..+.++ |++ .++++...++.|.+||+ .+.+...+..+ .+...+..+
T Consensus 261 ~~~i~~~g~~~~~---~~~~~~~~v~~i~~s-----~~~~~~~vs~~~~g~i~vvd~--~~~~~l~~~~i-~~~~~~~~~ 329 (543)
T 1nir_A 261 KQIVSTRGMTVDT---QTYHPEPRVAAIIAS-----HEHPEFIVNVKETGKVLLVNY--KDIDNLTVTSI-GAAPFLHDG 329 (543)
T ss_dssp EEEEECCEECSSS---CCEESCCCEEEEEEC-----SSSSEEEEEETTTTEEEEEEC--TTSSSCEEEEE-ECCSSCCCE
T ss_pred ceeecccCcccCc---cccccCCceEEEEEC-----CCCCEEEEEECCCCeEEEEEe--cCCCcceeEEe-ccCcCccCc
Confidence 8877643211000 000112267888998 754 56677778999999954 34332122233 356678899
Q ss_pred EEcCCCCEEEE-ecCCCcEEEEEecCCceeee
Q 021036 249 AWAFDGCCLYS-CSQDNFVRSWIFHGNSLSQV 279 (318)
Q Consensus 249 ~~~~~~~~l~s-~~~d~~v~iwd~~~~~~~~~ 279 (318)
.|+|+|+++++ +..+++|.+||+.++++...
T Consensus 330 ~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~ 361 (543)
T 1nir_A 330 GWDSSHRYFMTAANNSNKVAVIDSKDRRLSAL 361 (543)
T ss_dssp EECTTSCEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred eECCCCCEEEEEecCCCeEEEEECCCCeEEEe
Confidence 99999997665 45689999999999876543
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=4.9e-17 Score=137.88 Aligned_cols=205 Identities=8% Similarity=-0.011 Sum_probs=145.4
Q ss_pred CCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCcc-EEEEecCCCcEEEEEccCC
Q 021036 26 SKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFS-ILAVGGRSGKVSLWRICVP 104 (318)
Q Consensus 26 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~-~l~~g~~dg~i~iw~~~~~ 104 (318)
++.+.+||..+++.+..+.... . ...++|+|++ + ++++...++.|.+||.+++
T Consensus 68 ~~~v~~~d~~~~~~~~~~~~~~-----~---~~~~~~s~dg------------------~~l~v~~~~~~~v~~~d~~~~ 121 (353)
T 3vgz_A 68 GGVVYRLDPVTLEVTQAIHNDL-----K---PFGATINNTT------------------QTLWFGNTVNSAVTAIDAKTG 121 (353)
T ss_dssp SEEEEEECTTTCCEEEEEEESS-----C---CCSEEEETTT------------------TEEEEEETTTTEEEEEETTTC
T ss_pred CccEEEEcCCCCeEEEEEecCC-----C---cceEEECCCC------------------CEEEEEecCCCEEEEEeCCCC
Confidence 6789999999887655554311 1 2237788877 6 5566677899999999986
Q ss_pred ccccccccccCCceeEEeeeccccc---------cEEEEEeeeecCCCCCCCcEEEEEe--CCCcEEEEECCCcceeeee
Q 021036 105 KCYSVEDCKVPTTAVLIGLFQAHNS---------WITSISLAVLSSDSSNPQVLLVTGS--SDGSVRIWDGYIQELQKSA 173 (318)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~h~~---------~v~~~~~~p~~~~~~~~~~~l~s~~--~d~~v~iwd~~~~~~~~~~ 173 (318)
+ .+..+..+.. .+.++.| +++++++++++ .++.|.+||..+++....+
T Consensus 122 ~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~-------s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~ 180 (353)
T 3vgz_A 122 E--------------VKGRLVLDDRKRTEEVRPLQPRELVA-------DDATNTVYISGIGKESVIWVVDGGNIKLKTAI 180 (353)
T ss_dssp C--------------EEEEEESCCCCCCSSCCCCEEEEEEE-------ETTTTEEEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred e--------------eEEEEecCCCccccccCCCCCceEEE-------CCCCCEEEEEecCCCceEEEEcCCCCceEEEe
Confidence 5 3334433321 2788999 88888777766 4789999999988877665
Q ss_pred cccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeec----ccCceeEEE
Q 021036 174 EAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNA----HDQVVTGLA 249 (318)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~----h~~~v~~~~ 249 (318)
.... ..+..++|+ |+++.+++++.++.|.+| |..+++ .+..+.. +...+..++
T Consensus 181 ~~~~--------------~~~~~~~~s-----~dg~~l~~~~~~~~i~~~--d~~~~~--~~~~~~~~~~~~~~~~~~~~ 237 (353)
T 3vgz_A 181 QNTG--------------KMSTGLALD-----SEGKRLYTTNADGELITI--DTADNK--ILSRKKLLDDGKEHFFINIS 237 (353)
T ss_dssp CCCC--------------TTCCCCEEE-----TTTTEEEEECTTSEEEEE--ETTTTE--EEEEEECCCSSSCCCEEEEE
T ss_pred cCCC--------------CccceEEEC-----CCCCEEEEEcCCCeEEEE--ECCCCe--EEEEEEcCCCCCCcccceEE
Confidence 5222 146778999 999999999999999999 566665 3333332 455678899
Q ss_pred EcCCCCEEEEec-CCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 250 WAFDGCCLYSCS-QDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 250 ~~~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
|+|+|++++.++ .++.|.+||+.+++.......+. ...++|+|+|++++++
T Consensus 238 ~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~----------------~~~~~~s~dg~~l~v~ 289 (353)
T 3vgz_A 238 LDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE----------------SLAVLFNPARNEAYVT 289 (353)
T ss_dssp EETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS----------------CCCEEEETTTTEEEEE
T ss_pred ECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC----------------CceEEECCCCCEEEEE
Confidence 999999766655 45999999998876554332221 1578999999865543
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.4e-18 Score=158.74 Aligned_cols=255 Identities=9% Similarity=-0.056 Sum_probs=156.2
Q ss_pred CccceEEeeC-CC-----ceeEeecCCCCCCCceecchhccccccccceeeeecccccCC---C---CcccccccCCCCC
Q 021036 16 NTHPTVAASK-SK-----GNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLS---S---KKYPVPQNGSSNW 83 (318)
Q Consensus 16 ~~~~~~t~s~-d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~---~---~~~~v~~~~~s~~ 83 (318)
+...+++++. |+ ++++||+.+++..+.+........+..+ +...... . ....+.++++||+
T Consensus 47 dG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~SpD 119 (741)
T 2ecf_A 47 DGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETL-------SDEEKARRERQRIAAMTGIVDYQWSPD 119 (741)
T ss_dssp TSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC---------------------------CCEESCCCEECTT
T ss_pred CCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccc-------cchhhhhhhhhhhccccCcceeEECCC
Confidence 3455777777 88 8999999998765544432211000000 0000000 0 0123555666666
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEE
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWD 163 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd 163 (318)
|++|++++. +.|++||+.++.. .....+..|...+..++| +|+|++|+.++ ++.|++||
T Consensus 120 g~~l~~~~~-~~i~~~d~~~~~~------------~~~~~l~~~~~~~~~~~~-------SPDG~~la~~~-~~~i~~~d 178 (741)
T 2ecf_A 120 AQRLLFPLG-GELYLYDLKQEGK------------AAVRQLTHGEGFATDAKL-------SPKGGFVSFIR-GRNLWVID 178 (741)
T ss_dssp SSEEEEEET-TEEEEEESSSCST------------TSCCBCCCSSSCEEEEEE-------CTTSSEEEEEE-TTEEEEEE
T ss_pred CCEEEEEeC-CcEEEEECCCCCc------------ceEEEcccCCcccccccC-------CCCCCEEEEEe-CCcEEEEe
Confidence 699998876 9999999987510 012345667788999999 99999999887 46999999
Q ss_pred CCCcceeeeeccccccccc-c-eeeeeecccceeEEEEeeccCCCCceEEEEEeCCC-----------------------
Q 021036 164 GYIQELQKSAEAHCVPFSL-L-KEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSG----------------------- 218 (318)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg----------------------- 218 (318)
+.+++.......+...+.. . ..+.......+..+.|+ |||+.|++++.|+
T Consensus 179 ~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~S-----pDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~ 253 (741)
T 2ecf_A 179 LASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWA-----PDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRY 253 (741)
T ss_dssp TTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEEC-----TTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEEC
T ss_pred cCCCCEEEeccCCccceeccccceeeeeccccccceEEC-----CCCCEEEEEEEcCCCCceEecCCCCCCcccceEeec
Confidence 9987655433322110000 0 00000001124778999 9999999987665
Q ss_pred ----------cEEEeeeccCC-CeeeEeeeeecccCceeEEEEcCCCCEEEEecC-----CCcEEEEEecCCceeeeecC
Q 021036 219 ----------SFDLWKCDISC-NKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQ-----DNFVRSWIFHGNSLSQVSIP 282 (318)
Q Consensus 219 ----------~i~vw~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-----d~~v~iwd~~~~~~~~~~~~ 282 (318)
.|++| +..+ ++...+.....|...+..++| |||++|++++. +..|++||+.++....+...
T Consensus 254 ~~~g~~~~~~~l~~~--d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~ 330 (741)
T 2ecf_A 254 PAAGDANVQVKLGVI--SPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHE 330 (741)
T ss_dssp CBTTSCCCEEEEEEE--CSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEE
T ss_pred CCCCCCCCeeEEEEE--ECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEc
Confidence 56666 6656 553232221247778999999 99998887653 57899999988776544322
Q ss_pred CCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 283 TNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 283 ~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
.... ....+..++|+|||++++++
T Consensus 331 ~~~~----------~~~~~~~~~~spdg~~~~~~ 354 (741)
T 2ecf_A 331 TSPT----------WVPLHNSLRFLDDGSILWSS 354 (741)
T ss_dssp ECSS----------CCCCCSCCEECTTSCEEEEE
T ss_pred CCCC----------cCCcCCceEECCCCeEEEEe
Confidence 1110 00134688999999987765
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.8e-17 Score=152.55 Aligned_cols=173 Identities=14% Similarity=0.185 Sum_probs=119.4
Q ss_pred CCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCC-----cEEEEECCC
Q 021036 92 RSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDG-----SVRIWDGYI 166 (318)
Q Consensus 92 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~-----~v~iwd~~~ 166 (318)
.+..|++||+.+++. ..+.....|...+.+++| +++|++|++++.++ .|++||+.+
T Consensus 233 ~~~~l~~~d~~~~~~------------~~~~~~~~~~~~~~~~~~-------spdg~~l~~~~~~~~~~~~~v~~~d~~~ 293 (706)
T 2z3z_A 233 HHVTVGIYHLATGKT------------VYLQTGEPKEKFLTNLSW-------SPDENILYVAEVNRAQNECKVNAYDAET 293 (706)
T ss_dssp CEEEEEEEETTTTEE------------EECCCCSCTTCEEEEEEE-------CTTSSEEEEEEECTTSCEEEEEEEETTT
T ss_pred CeeEEEEEECCCCce------------EeeccCCCCceeEeeEEE-------ECCCCEEEEEEeCCCCCeeEEEEEECCC
Confidence 446799999987542 112112356778999999 99999999988776 999999998
Q ss_pred cceeeeecccccccccceeeeeecccceeEEEEeeccCCC--CceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCc
Q 021036 167 QELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSP--RLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQV 244 (318)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~ 244 (318)
++....+..... ......+..++|+ | +|+++++++.++.+++|.++.... .+..+..|...
T Consensus 294 g~~~~~~~~~~~---------~~~~~~~~~~~~s-----p~~dg~~l~~~~~~g~~~l~~~~~~~~---~~~~l~~~~~~ 356 (706)
T 2z3z_A 294 GRFVRTLFVETD---------KHYVEPLHPLTFL-----PGSNNQFIWQSRRDGWNHLYLYDTTGR---LIRQVTKGEWE 356 (706)
T ss_dssp CCEEEEEEEEEC---------SSCCCCCSCCEEC-----TTCSSEEEEEECTTSSCEEEEEETTSC---EEEECCCSSSC
T ss_pred CceeeEEEEccC---------CCeECccCCceee-----cCCCCEEEEEEccCCccEEEEEECCCC---EEEecCCCCeE
Confidence 843333221110 0000124567898 9 999999999999999998775444 34556667777
Q ss_pred eeE-EEEcCCCCEEEEec-CCC----cEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 245 VTG-LAWAFDGCCLYSCS-QDN----FVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 245 v~~-~~~~~~~~~l~s~~-~d~----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
+.. ++|+|+|+.|+.++ .++ .|..||+.++....+. |...+.+++|+|||++|+..
T Consensus 357 v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~----------------~~~~~~~~~~spdg~~l~~~ 418 (706)
T 2z3z_A 357 VTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKDLT----------------PESGMHRTQLSPDGSAIIDI 418 (706)
T ss_dssp EEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEESC----------------CSSSEEEEEECTTSSEEEEE
T ss_pred EEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCceecc----------------CCCceEEEEECCCCCEEEEE
Confidence 876 79999998776554 444 5666676665544332 12367899999999988764
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.9e-17 Score=160.01 Aligned_cols=181 Identities=9% Similarity=-0.007 Sum_probs=142.8
Q ss_pred ccccccCCC-CCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccc-cEEEEEeeeecCCCCCCCcEE
Q 021036 73 YPVPQNGSS-NWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNS-WITSISLAVLSSDSSNPQVLL 150 (318)
Q Consensus 73 ~~v~~~~~s-~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~~~~~~~l 150 (318)
..+.++.++ |+|++|++++ ++.|.+|+..+++ ...+..|.. .+..++| + +|+.|
T Consensus 296 ~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~---------------~~~~~~~~~~~~~~~~~-------s-dg~~l 351 (1045)
T 1k32_A 296 PSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY---------------VLKVPEPLRIRYVRRGG-------D-TKVAF 351 (1045)
T ss_dssp GGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSB---------------EEECSCCSCEEEEEECS-------S-SEEEE
T ss_pred cccceeeecCCCCCEEEEEE-cCEEEEEcCCCCc---------------eEEccCCCcceEEeeeE-------c-CCCeE
Confidence 368899999 9999998887 7899999998643 223556777 8999999 8 99999
Q ss_pred EEEeCCCcEE-EEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCC
Q 021036 151 VTGSSDGSVR-IWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISC 229 (318)
Q Consensus 151 ~s~~~d~~v~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~ 229 (318)
++++.++.+. +||+.+++..... . +...+..++|+ |+|+.|++++.++.|++| +..+
T Consensus 352 ~~~s~~~~l~~~~d~~~~~~~~l~-~--------------~~~~~~~~~~S-----pDG~~la~~~~~~~v~~~--d~~t 409 (1045)
T 1k32_A 352 IHGTREGDFLGIYDYRTGKAEKFE-E--------------NLGNVFAMGVD-----RNGKFAVVANDRFEIMTV--DLET 409 (1045)
T ss_dssp EEEETTEEEEEEEETTTCCEEECC-C--------------CCCSEEEEEEC-----TTSSEEEEEETTSEEEEE--ETTT
T ss_pred EEEECCCceEEEEECCCCCceEec-C--------------CccceeeeEEC-----CCCCEEEEECCCCeEEEE--ECCC
Confidence 9999888888 9998876543222 2 23478899999 999999999999999999 5566
Q ss_pred CeeeEeeeeecccCceeEEEEcCCCCEEEEecCCC----------cEEEEEecCCceeeeecCCCCCCccccccCCCcce
Q 021036 230 NKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDN----------FVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFV 299 (318)
Q Consensus 230 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~----------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 299 (318)
++ ......+|...+..++|+|||++|++++.++ .|++||+.++....+.. |..
T Consensus 410 g~--~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~---------------~~~ 472 (1045)
T 1k32_A 410 GK--PTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATT---------------ENS 472 (1045)
T ss_dssp CC--EEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSC---------------SSS
T ss_pred Cc--eEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeC---------------CCc
Confidence 65 3334457888999999999999998887654 89999998876443332 334
Q ss_pred eeeEEEEcCCCcEEEEE
Q 021036 300 SCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 300 ~v~~v~~sp~~~~l~~~ 316 (318)
.+..++|+|||++|+.+
T Consensus 473 ~~~~~~~spdG~~l~~~ 489 (1045)
T 1k32_A 473 HDYAPAFDADSKNLYYL 489 (1045)
T ss_dssp BEEEEEECTTSCEEEEE
T ss_pred ccCCceEcCCCCEEEEE
Confidence 67889999999988765
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.78 E-value=7.2e-17 Score=136.58 Aligned_cols=216 Identities=7% Similarity=-0.019 Sum_probs=144.6
Q ss_pred CCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccE-EEEecCC
Q 021036 15 SNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSI-LAVGGRS 93 (318)
Q Consensus 15 ~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~-l~~g~~d 93 (318)
.+...+++++.+++|.+||+.+++.+..+.... ... ...++|+|++ ++ ++++..+
T Consensus 9 ~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~---~~~~~~s~dg------------------~~~~v~~~~~ 64 (349)
T 1jmx_B 9 AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPD---KFG---PGTAMMAPDN------------------RTAYVLNNHY 64 (349)
T ss_dssp TTCEEEEEEETTTEEEEEETTTTEEEEEEECSS---CCS---SCEEEECTTS------------------SEEEEEETTT
T ss_pred CCCEEEEEeCCCCeEEEEECCCCcEEEEEecCC---CCC---CceeEECCCC------------------CEEEEEeCCC
Confidence 455668899999999999999887655554321 001 2237777776 64 4566778
Q ss_pred CcEEEEEccCCccccccccccCCceeEEeeecc-c-----cccEEEEEeeeecCCCCCCCcEEEEEeCC-----------
Q 021036 94 GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQA-H-----NSWITSISLAVLSSDSSNPQVLLVTGSSD----------- 156 (318)
Q Consensus 94 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-h-----~~~v~~~~~~p~~~~~~~~~~~l~s~~~d----------- 156 (318)
+.|.+||..+++ .+..+.. + ...+..++| +++|++|++++.+
T Consensus 65 ~~i~~~d~~t~~--------------~~~~~~~~~~~~~~~~~~~~~~~-------spdg~~l~~~~~~~~~~~~~~~~~ 123 (349)
T 1jmx_B 65 GDIYGIDLDTCK--------------NTFHANLSSVPGEVGRSMYSFAI-------SPDGKEVYATVNPTQRLNDHYVVK 123 (349)
T ss_dssp TEEEEEETTTTE--------------EEEEEESCCSTTEEEECSSCEEE-------CTTSSEEEEEEEEEEECSSCEEEC
T ss_pred CcEEEEeCCCCc--------------EEEEEEcccccccccccccceEE-------CCCCCEEEEEcccccccccccccC
Confidence 999999998854 3333332 1 233778999 8999999998865
Q ss_pred -CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEe
Q 021036 157 -GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKV 235 (318)
Q Consensus 157 -~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 235 (318)
+.|.+||+.+++....+.... +...+.+++|+ |+++ +++++. .|++| |..+++. +
T Consensus 124 ~~~i~~~d~~~~~~~~~~~~~~------------~~~~~~~~~~s-----~dg~-l~~~~~--~i~~~--d~~~~~~--~ 179 (349)
T 1jmx_B 124 PPRLEVFSTADGLEAKPVRTFP------------MPRQVYLMRAA-----DDGS-LYVAGP--DIYKM--DVKTGKY--T 179 (349)
T ss_dssp CCEEEEEEGGGGGGBCCSEEEE------------CCSSCCCEEEC-----TTSC-EEEESS--SEEEE--CTTTCCE--E
T ss_pred CCeEEEEECCCccccceeeecc------------CCCcccceeEC-----CCCc-EEEccC--cEEEE--eCCCCce--e
Confidence 899999998865433221111 12257788898 9999 555543 48998 5545442 2
Q ss_pred eeeecc--------------------------------------------------------------------cCceeE
Q 021036 236 GSYNAH--------------------------------------------------------------------DQVVTG 247 (318)
Q Consensus 236 ~~~~~h--------------------------------------------------------------------~~~v~~ 247 (318)
..+..+ ...+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (349)
T 1jmx_B 180 VALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFT 259 (349)
T ss_dssp EEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEE
T ss_pred ccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCccee
Confidence 222111 124557
Q ss_pred EEEcC-CCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 248 LAWAF-DGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 248 ~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
++|+| ++++++++ ++.|.+||+.+++......... .+.+++|+|||++|+++
T Consensus 260 ~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~---------------~~~~~~~s~dg~~l~~~ 312 (349)
T 1jmx_B 260 GLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDH---------------TYYCVAFDKKGDKLYLG 312 (349)
T ss_dssp EEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSS---------------CCCEEEECSSSSCEEEE
T ss_pred eEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCC---------------CccceEECCCCCEEEEe
Confidence 78889 99988888 8899999998877654332221 35789999999877764
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-16 Score=134.76 Aligned_cols=229 Identities=12% Similarity=0.103 Sum_probs=140.2
Q ss_pred eCCCceeEeecCC--CCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEec--CCCcEEEE
Q 021036 24 SKSKGNSITKIPS--NCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGG--RSGKVSLW 99 (318)
Q Consensus 24 s~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~--~dg~i~iw 99 (318)
+.++.+.+|++.. ++... +.. ..+... ...++|+|++ ++++++. .++.|.+|
T Consensus 13 ~~~~~i~v~~~d~~tg~~~~-~~~--~~~~~~---p~~~a~spdg------------------~l~~~~~~~~~~~v~~~ 68 (347)
T 3hfq_A 13 KTSQGIYQGTLDTTAKTLTN-DGL--LAATQN---PTYLALSAKD------------------CLYSVDKEDDEGGIAAW 68 (347)
T ss_dssp SSCCEEEEEEEETTTTEEEE-EEE--EEECSC---CCCEEECTTC------------------EEEEEEEETTEEEEEEE
T ss_pred CCCCCEEEEEEcCCCCeEEE-eee--eeccCC---cceEEEccCC------------------eEEEEEecCCCceEEEE
Confidence 4567788887654 33221 111 111111 2337777776 7444443 26899999
Q ss_pred EccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEe-CCCcEEEEECCC-cce--eeeecc
Q 021036 100 RICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS-SDGSVRIWDGYI-QEL--QKSAEA 175 (318)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~-~d~~v~iwd~~~-~~~--~~~~~~ 175 (318)
++.+++ .+.+..+..+...+..++| +++|++|++++ .++.|.+|++.. +.. +..+..
T Consensus 69 ~~~~g~------------~~~~~~~~~~~~~p~~~a~-------spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~ 129 (347)
T 3hfq_A 69 QIDGQT------------AHKLNTVVAPGTPPAYVAV-------DEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQH 129 (347)
T ss_dssp EEETTE------------EEEEEEEEEESCCCSEEEE-------ETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEEC
T ss_pred EecCCc------------EEEeeeeecCCCCCEEEEE-------CCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeec
Confidence 997654 3345555567778899999 89999888887 679999999963 222 111111
Q ss_pred cccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecc-cCceeEEEEcCCC
Q 021036 176 HCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAH-DQVVTGLAWAFDG 254 (318)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~ 254 (318)
..... ........+.+++|+ |+|+++++...++.|++|+++. +++...+..+..+ ...+..++|+|+|
T Consensus 130 ~~~~p-----~~~~~~~~~~~~~~s-----pdg~l~v~~~~~~~v~~~~~~~-~g~~~~~~~~~~~~g~~p~~~~~spdg 198 (347)
T 3hfq_A 130 SGHGP-----RPEQDGSHIHYTDLT-----PDNRLAVIDLGSDKVYVYNVSD-AGQLSEQSVLTMEAGFGPRHLVFSPDG 198 (347)
T ss_dssp CCCCS-----STTCSSCCEEEEEEC-----TTSCEEEEETTTTEEEEEEECT-TSCEEEEEEEECCTTCCEEEEEECTTS
T ss_pred CCCCC-----CccccCCCceEEEEC-----CCCcEEEEeCCCCEEEEEEECC-CCcEEEeeeEEcCCCCCCceEEECCCC
Confidence 00000 000112247789999 9999777777788999997652 3443343333332 2367889999999
Q ss_pred CEEEE-ecCCCcEEEEEecC--Cceeee---ecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 255 CCLYS-CSQDNFVRSWIFHG--NSLSQV---SIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 255 ~~l~s-~~~d~~v~iwd~~~--~~~~~~---~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
+++++ +..++.|.+|++.. +..... ...+.. ......+..++|+|||++|++
T Consensus 199 ~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~---------~~~~~~~~~i~~spdG~~l~v 256 (347)
T 3hfq_A 199 QYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPAD---------YTAHNGAAAIRLSHDGHFLYV 256 (347)
T ss_dssp SEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTT---------CCSCCEEEEEEECTTSCEEEE
T ss_pred CEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCC---------CCCCCcceeEEECCCCCEEEE
Confidence 96555 56788999999874 443221 111110 001136789999999998754
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-16 Score=143.72 Aligned_cols=179 Identities=8% Similarity=-0.055 Sum_probs=134.6
Q ss_pred CCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCc
Q 021036 79 GSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGS 158 (318)
Q Consensus 79 ~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~ 158 (318)
.+++++.++++++.|++|.+||..+++ .+..+..+.. +..++| +++|++|++++.|++
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~--------------~~~~i~~g~~-~~~v~~-------spdg~~l~v~~~d~~ 201 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKK--------------IVKVIDTGYA-VHISRM-------SASGRYLLVIGRDAR 201 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCC--------------EEEEEECSTT-EEEEEE-------CTTSCEEEEEETTSE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCce--------------EEEEEecCcc-cceEEE-------CCCCCEEEEECCCCe
Confidence 366777999999999999999999854 4556663333 899999 999999999999999
Q ss_pred EEEEEC--CCcceeeeecccccccccceeeeeecccceeEEEEeeccCCC----CceEEEEEe-CCCcEEEeeeccCCCe
Q 021036 159 VRIWDG--YIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSP----RLMLLAVGK-GSGSFDLWKCDISCNK 231 (318)
Q Consensus 159 v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~----~~~~l~~~~-~dg~i~vw~~~~~~~~ 231 (318)
|.+||+ .+++.+..+.... .+..++|+ | +|+++++++ .+++|.+| |..+.+
T Consensus 202 V~v~D~~~~t~~~~~~i~~g~---------------~p~~va~s-----p~~~~dg~~l~v~~~~~~~v~v~--D~~t~~ 259 (543)
T 1nir_A 202 IDMIDLWAKEPTKVAEIKIGI---------------EARSVESS-----KFKGYEDRYTIAGAYWPPQFAIM--DGETLE 259 (543)
T ss_dssp EEEEETTSSSCEEEEEEECCS---------------EEEEEEEC-----CSTTCTTTEEEEEEEESSEEEEE--ETTTCC
T ss_pred EEEEECcCCCCcEEEEEecCC---------------CcceEEeC-----CCcCCCCCEEEEEEccCCeEEEE--eccccc
Confidence 999999 7777666654322 56889999 9 999999988 58999999 555655
Q ss_pred eeEeeeeec----------ccC-ceeEEEEcCCCC-EEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcce
Q 021036 232 FDKVGSYNA----------HDQ-VVTGLAWAFDGC-CLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFV 299 (318)
Q Consensus 232 ~~~~~~~~~----------h~~-~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 299 (318)
++..+.. |.. .+.++.++|++. ++++...++.|.+||+.+.........+ +..
T Consensus 260 --~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-------------~~~ 324 (543)
T 1nir_A 260 --PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-------------AAP 324 (543)
T ss_dssp --EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-------------CCS
T ss_pred --cceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-------------cCc
Confidence 4444432 323 688999999766 6677888999999999875432211101 112
Q ss_pred eeeEEEEcCCCcEEEEE
Q 021036 300 SCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 300 ~v~~v~~sp~~~~l~~~ 316 (318)
.+.+++|+|||++++++
T Consensus 325 ~~~~~~~spdg~~l~va 341 (543)
T 1nir_A 325 FLHDGGWDSSHRYFMTA 341 (543)
T ss_dssp SCCCEEECTTSCEEEEE
T ss_pred CccCceECCCCCEEEEE
Confidence 56789999999987654
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.9e-16 Score=130.69 Aligned_cols=229 Identities=11% Similarity=0.024 Sum_probs=141.0
Q ss_pred cceEEeeCCCceeEeecCCCCC-CCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCC--
Q 021036 18 HPTVAASKSKGNSITKIPSNCC-LPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSG-- 94 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg-- 94 (318)
...+++..++.+.+||..+++. ...+.. .... ..+++|+|++ ++|+++..++
T Consensus 53 ~l~~~~~~~~~i~~~d~~~~~~~~~~~~~----~~~~---~~~~~~s~dg------------------~~l~~~~~~~~~ 107 (331)
T 3u4y_A 53 NVVVTSDFCQTLVQIETQLEPPKVVAIQE----GQSS---MADVDITPDD------------------QFAVTVTGLNHP 107 (331)
T ss_dssp EEEEEESTTCEEEEEECSSSSCEEEEEEE----CSSC---CCCEEECTTS------------------SEEEECCCSSSS
T ss_pred EEEEEeCCCCeEEEEECCCCceeEEeccc----CCCC---ccceEECCCC------------------CEEEEecCCCCc
Confidence 3445555588999999988765 222221 1111 1125666666 8888665553
Q ss_pred -cEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEE-EeCCCc-EEEEECCCcceee
Q 021036 95 -KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVT-GSSDGS-VRIWDGYIQELQK 171 (318)
Q Consensus 95 -~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s-~~~d~~-v~iwd~~~~~~~~ 171 (318)
.|.+||+++++ .+..+.. .....+++| +++|++|++ ...++. |.+|++.....+.
T Consensus 108 ~~i~v~d~~~~~--------------~~~~~~~-~~~~~~~~~-------spdg~~l~~~~~~~~~~i~~~~~~~~g~~~ 165 (331)
T 3u4y_A 108 FNMQSYSFLKNK--------------FISTIPI-PYDAVGIAI-------SPNGNGLILIDRSSANTVRRFKIDADGVLF 165 (331)
T ss_dssp CEEEEEETTTTE--------------EEEEEEC-CTTEEEEEE-------CTTSSCEEEEEETTTTEEEEEEECTTCCEE
T ss_pred ccEEEEECCCCC--------------eEEEEEC-CCCccceEE-------CCCCCEEEEEecCCCceEEEEEECCCCcEe
Confidence 89999998854 3344443 345689999 899975554 455688 9999998644332
Q ss_pred eecccccccccceeeeeecccceeEEEEeeccCCCCceEEEE-EeCCCcEEEeeeccCCCee-eEeeeeecccCceeEEE
Q 021036 172 SAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAV-GKGSGSFDLWKCDISCNKF-DKVGSYNAHDQVVTGLA 249 (318)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~-~~~dg~i~vw~~~~~~~~~-~~~~~~~~h~~~v~~~~ 249 (318)
... .. . .........++|+ |+|+.+++ +..++.|++|+ ..+++. ..+..+.. ...+..++
T Consensus 166 ~~~-~~--------~-~~~~~~~~~~~~s-----pdg~~l~v~~~~~~~v~v~d--~~~~~~~~~~~~~~~-~~~~~~~~ 227 (331)
T 3u4y_A 166 DTG-QE--------F-ISGGTRPFNITFT-----PDGNFAFVANLIGNSIGILE--TQNPENITLLNAVGT-NNLPGTIV 227 (331)
T ss_dssp EEE-EE--------E-ECSSSSEEEEEEC-----TTSSEEEEEETTTTEEEEEE--CSSTTSCEEEEEEEC-SSCCCCEE
T ss_pred ecC-Cc--------c-ccCCCCccceEEC-----CCCCEEEEEeCCCCeEEEEE--CCCCcccceeeeccC-CCCCceEE
Confidence 211 00 0 0122356889999 99985554 55789999995 444442 12445543 45678999
Q ss_pred EcCCCCEEEEe-cCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 250 WAFDGCCLYSC-SQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 250 ~~~~~~~l~s~-~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
|+|+|++++.+ ..++.|.+||+.+++...+........+. .........++|+|||++|+++
T Consensus 228 ~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~spdg~~l~v~ 290 (331)
T 3u4y_A 228 VSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLID-----PRPLFGANQMALNKTETKLFIS 290 (331)
T ss_dssp ECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCC-----CGGGTTCCCEEECTTSSEEEEE
T ss_pred ECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccC-----CCCcccccceEECCCCCEEEEe
Confidence 99999976554 45788999999887763322111100000 0001122568999999987654
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.9e-17 Score=150.85 Aligned_cols=244 Identities=10% Similarity=0.037 Sum_probs=145.1
Q ss_pred cceEEeeCCCceeEeecCCCCC--CCceecchhccccccccceeeeecccccC-CCCcccccccCCCCCccEEEEecCCC
Q 021036 18 HPTVAASKSKGNSITKIPSNCC--LPLITADQYASRSAMLHSLAVAWSPVLRL-SSKKYPVPQNGSSNWFSILAVGGRSG 94 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~w~p~~~~-~~~~~~v~~~~~s~~~~~l~~g~~dg 94 (318)
..+++++.|+ | +||+.+++. ...+....... ..++...+ ..+...|.++++|+++.++++ .++
T Consensus 36 ~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~----------~l~~~~~~~~~~~~~v~~~~~spd~~~~~~--~~~ 101 (706)
T 2z3z_A 36 DNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNA----------LMPEGCKFQTTDAFPSFRTLDAGRGLVVLF--TQG 101 (706)
T ss_dssp TEEEEEETTE-E-EEEC-------CEEEEHHHHHT----------TC-----------CCCEEEEETTTTEEEEE--ETT
T ss_pred CeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhh----------hccchhccccccccCceeEEECCCCeEEEE--ECC
Confidence 3467777777 8 999999887 33332211100 00000000 011234555566666244444 359
Q ss_pred cEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCC-----cce
Q 021036 95 KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYI-----QEL 169 (318)
Q Consensus 95 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~-----~~~ 169 (318)
.|++||+.+++ . ..+..+...+.+++| +|+|++|+++ .|+.|++||+.+ ++.
T Consensus 102 ~i~~~d~~~~~--------------~-~~l~~~~~~~~~~~~-------SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~ 158 (706)
T 2z3z_A 102 GLVGFDMLARK--------------V-TYLFDTNEETASLDF-------SPVGDRVAYV-RNHNLYIARGGKLGEGMSRA 158 (706)
T ss_dssp EEEEEETTTTE--------------E-EEEECCTTCCTTCEE-------CTTSSEEEEE-ETTEEEEEECBCTTSCCCCC
T ss_pred EEEEEECCCCc--------------e-EEccCCcccccCCcC-------CCCCCEEEEE-ECCeEEEEecCcccccCCCc
Confidence 99999998754 2 233445677889999 9999999985 689999999988 765
Q ss_pred eeeeccccccc-ccceeeeeecccceeEEEEeeccCCCCceEEEEEe---------------------------------
Q 021036 170 QKSAEAHCVPF-SLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK--------------------------------- 215 (318)
Q Consensus 170 ~~~~~~~~~~~-~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~--------------------------------- 215 (318)
..........+ .-.. +...+...+.++.|+ |||+.|++++
T Consensus 159 ~~~~~~~~~~~~~g~~-~~~ee~~~~~~~~~S-----pDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~ 232 (706)
T 2z3z_A 159 IAVTIDGTETLVYGQA-VHQREFGIEKGTFWS-----PKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPS 232 (706)
T ss_dssp EESCSCCBTTEEESSC-CGGGCTTCCCSEEEC-----TTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCC
T ss_pred EEeccCCCCCeEcccc-hhhhhcCCCceEEEC-----CCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCC
Confidence 54332221100 0000 000011235788999 9999999987
Q ss_pred CCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCC-----cEEEEEecCC-ceeeeecCCCCCCcc
Q 021036 216 GSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDN-----FVRSWIFHGN-SLSQVSIPTNTPGLQ 289 (318)
Q Consensus 216 ~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~-----~v~iwd~~~~-~~~~~~~~~~~~~~~ 289 (318)
.+..|++| +..+++...+.....|...+..++|+|||++|++++.++ .|++||+.++ ....+.......
T Consensus 233 ~~~~l~~~--d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~--- 307 (706)
T 2z3z_A 233 HHVTVGIY--HLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKH--- 307 (706)
T ss_dssp CEEEEEEE--ETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSS---
T ss_pred CeeEEEEE--ECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCC---
Confidence 34567777 666666433332235677899999999999999887775 8999999887 444332111100
Q ss_pred ccccCCCcceeeeEEEEcC--CCcEEEEE
Q 021036 290 SCTDLPDAFVSCLGMAVSP--GNLVVAMV 316 (318)
Q Consensus 290 ~~~~~~~h~~~v~~v~~sp--~~~~l~~~ 316 (318)
....+.+++|+| ||++++++
T Consensus 308 -------~~~~~~~~~~sp~~dg~~l~~~ 329 (706)
T 2z3z_A 308 -------YVEPLHPLTFLPGSNNQFIWQS 329 (706)
T ss_dssp -------CCCCCSCCEECTTCSSEEEEEE
T ss_pred -------eECccCCceeecCCCCEEEEEE
Confidence 011346789999 99988876
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.2e-17 Score=150.97 Aligned_cols=180 Identities=9% Similarity=-0.007 Sum_probs=127.4
Q ss_pred cCCCCCccEEEEecC-CC-----cEEEEEccCCccccccccccCCceeEEeeecccc-----------------------
Q 021036 78 NGSSNWFSILAVGGR-SG-----KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHN----------------------- 128 (318)
Q Consensus 78 ~~~s~~~~~l~~g~~-dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~----------------------- 128 (318)
+++|++|++|++++. |+ .|++||+.+++.. ..+..+.
T Consensus 42 ~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (741)
T 2ecf_A 42 PKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTR--------------LLVDSKVVLPGTETLSDEEKARRERQRIAA 107 (741)
T ss_dssp EEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEE--------------EEECGGGTC--------------------C
T ss_pred ceEecCCCEEEEEeccCCCCcccEEEEEECCCCcee--------------Eccchhhcccccccccchhhhhhhhhhhcc
Confidence 333333499999888 88 8999999986532 2222221
Q ss_pred -ccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcc--eeeeecccccccccceeeeeecccceeEEEEeeccCC
Q 021036 129 -SWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQE--LQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQS 205 (318)
Q Consensus 129 -~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 205 (318)
..|.+++| +++|++|++++. +.|++||+.++. ....+.. +...+..++|+
T Consensus 108 ~~~v~~~~~-------SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~--------------~~~~~~~~~~S----- 160 (741)
T 2ecf_A 108 MTGIVDYQW-------SPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTH--------------GEGFATDAKLS----- 160 (741)
T ss_dssp CEESCCCEE-------CTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCC--------------SSSCEEEEEEC-----
T ss_pred ccCcceeEE-------CCCCCEEEEEeC-CcEEEEECCCCCcceEEEccc--------------CCcccccccCC-----
Confidence 34789999 999999999987 999999998872 2222222 23468899999
Q ss_pred CCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCc----------------eeEEEEcCCCCEEEEecCCC-----
Q 021036 206 PRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQV----------------VTGLAWAFDGCCLYSCSQDN----- 264 (318)
Q Consensus 206 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~----------------v~~~~~~~~~~~l~s~~~d~----- 264 (318)
|||+.|+.++ ++.|++| +..+++...+ ...+... +..++|+|||++|++++.|+
T Consensus 161 PDG~~la~~~-~~~i~~~--d~~~g~~~~~--~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~ 235 (741)
T 2ecf_A 161 PKGGFVSFIR-GRNLWVI--DLASGRQMQL--TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPV 235 (741)
T ss_dssp TTSSEEEEEE-TTEEEEE--ETTTTEEEEC--CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCE
T ss_pred CCCCEEEEEe-CCcEEEE--ecCCCCEEEe--ccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCce
Confidence 9999999988 5689999 5556553222 2222221 47899999999999987765
Q ss_pred ----------------------------cEEEEEecC-CceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 265 ----------------------------FVRSWIFHG-NSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 265 ----------------------------~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
.|++||+.+ +....+... ..|...+..++| |||++|++
T Consensus 236 ~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~------------~~~~~~~~~~~~-pDg~~l~~ 302 (741)
T 2ecf_A 236 QKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLG------------KEQDIYLARVNW-RDPQHLSF 302 (741)
T ss_dssp EEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCC------------SCSSEEEEEEEE-EETTEEEE
T ss_pred EecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCC------------CCcceEEEEEEe-CCCCEEEE
Confidence 788888877 665543321 125568999999 99999886
Q ss_pred E
Q 021036 316 V 316 (318)
Q Consensus 316 ~ 316 (318)
+
T Consensus 303 ~ 303 (741)
T 2ecf_A 303 Q 303 (741)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.4e-17 Score=153.35 Aligned_cols=187 Identities=11% Similarity=0.006 Sum_probs=127.6
Q ss_pred ccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccc---cEEEEEeeeecCCCCCCCcEEEEE
Q 021036 77 QNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNS---WITSISLAVLSSDSSNPQVLLVTG 153 (318)
Q Consensus 77 ~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~p~~~~~~~~~~~l~s~ 153 (318)
++.|+++|+++++ +.||.|++||..+++ ....+..|.. .|.+++| +|+|++|+++
T Consensus 21 ~~~~spdg~~~~~-~~dg~i~~~d~~~g~--------------~~~~~~~~~~~~~~v~~~~~-------SpDg~~l~~~ 78 (723)
T 1xfd_A 21 EAKWISDTEFIYR-EQKGTVRLWNVETNT--------------STVLIEGKKIESLRAIRYEI-------SPDREYALFS 78 (723)
T ss_dssp CCCBSSSSCBCCC-CSSSCEEEBCGGGCC--------------CEEEECTTTTTTTTCSEEEE-------CTTSSEEEEE
T ss_pred ccEEcCCCcEEEE-eCCCCEEEEECCCCc--------------EEEEeccccccccccceEEE-------CCCCCEEEEE
Confidence 3344444487766 789999999999865 2344555554 4899999 9999999999
Q ss_pred eCC---------CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEee
Q 021036 154 SSD---------GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWK 224 (318)
Q Consensus 154 ~~d---------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~ 224 (318)
+.+ +.+.+||+.+++. ..+.... .+...+..++|+ |||+.|+.++. +.|++|
T Consensus 79 ~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~-----------~~~~~~~~~~~S-----PdG~~la~~~~-~~i~~~- 139 (723)
T 1xfd_A 79 YNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPE-----------VSNAKLQYAGWG-----PKGQQLIFIFE-NNIYYC- 139 (723)
T ss_dssp ESCCCCSSSCCCSEEEEEESSSCCC-EECCCTT-----------CCSCCCSBCCBC-----SSTTCEEEEET-TEEEEE-
T ss_pred ecCccceeecceeeEEEEECCCCce-EeccCCc-----------cccccccccEEC-----CCCCEEEEEEC-CeEEEE-
Confidence 875 7888999998875 2222111 122247788899 99999999885 789999
Q ss_pred eccCCCeeeEeeeeecccCc------------------eeEEEEcCCCCEEEEecCCC----------------------
Q 021036 225 CDISCNKFDKVGSYNAHDQV------------------VTGLAWAFDGCCLYSCSQDN---------------------- 264 (318)
Q Consensus 225 ~~~~~~~~~~~~~~~~h~~~------------------v~~~~~~~~~~~l~s~~~d~---------------------- 264 (318)
+..+++...+ ...+... +.+++|+|||++|++++.|+
T Consensus 140 -~~~~g~~~~~--~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (723)
T 1xfd_A 140 -AHVGKQAIRV--VSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPY 216 (723)
T ss_dssp -SSSSSCCEEE--ECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEE
T ss_pred -ECCCCceEEE--ecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceec
Confidence 5555553222 2222222 37899999999999887553
Q ss_pred ------------cEEEEEecCCce-eeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 265 ------------FVRSWIFHGNSL-SQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 265 ------------~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
.|++||+.++.. ..+.... ....+...+..++|+|||++|++.
T Consensus 217 ~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~---------~~~~~~~~~~~~~~SpDg~~l~~~ 272 (723)
T 1xfd_A 217 HYPKAGSENPSISLHVIGLNGPTHDLEMMPPD---------DPRMREYYITMVKWATSTKVAVTW 272 (723)
T ss_dssp ECCBTTSCCCEEEEEEEESSSSCCCEECCCCC---------CGGGSSEEEEEEEESSSSEEEEEE
T ss_pred cCCCCCCCCCeeEEEEEECCCCceeEEeeCCc---------cCCCccceeEEEEEeCCCeEEEEE
Confidence 678888877653 3222111 111234688999999999988654
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-15 Score=130.46 Aligned_cols=178 Identities=12% Similarity=0.122 Sum_probs=115.9
Q ss_pred CCCcEEEEEccC-CccccccccccCCceeEEeeec-cccccEEEEEeeeecCCCCCCCcEEEEEeC-CCcEEEEECC-Cc
Q 021036 92 RSGKVSLWRICV-PKCYSVEDCKVPTTAVLIGLFQ-AHNSWITSISLAVLSSDSSNPQVLLVTGSS-DGSVRIWDGY-IQ 167 (318)
Q Consensus 92 ~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~-d~~v~iwd~~-~~ 167 (318)
.+|.+.+|++.. ++. ...+..+. .+...+.+++| +++|++|+++.. ++.|++||+. ++
T Consensus 117 ~~g~v~v~~~~~~g~~-----------~~~~~~~~~~~~~~~~~~~~-------spdG~~l~~~~~~~~~v~~~~~~~~g 178 (365)
T 1jof_A 117 FAGYGNVFSVSETGKL-----------EKNVQNYEYQENTGIHGMVF-------DPTETYLYSADLTANKLWTHRKLASG 178 (365)
T ss_dssp SCCEEEEEEECTTCCE-----------EEEEEEEECCTTCCEEEEEE-------CTTSSEEEEEETTTTEEEEEEECTTS
T ss_pred CCceEEEEccCCCCcC-----------cceEeeEEeCCCCcceEEEE-------CCCCCEEEEEcCCCCEEEEEEECCCC
Confidence 689999999974 331 11122211 24567899999 999998887764 6899999998 66
Q ss_pred ceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeC-CCcEEEeeeccCCCeeeE----eeeee---
Q 021036 168 ELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKG-SGSFDLWKCDISCNKFDK----VGSYN--- 239 (318)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~----~~~~~--- 239 (318)
+......... ..+...+..++|+ |+|+++++++. ++.|.+|+++..+++... +..+.
T Consensus 179 ~~~~~~~~~~----------~~~g~~p~~~~~s-----pdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~ 243 (365)
T 1jof_A 179 EVELVGSVDA----------PDPGDHPRWVAMH-----PTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGI 243 (365)
T ss_dssp CEEEEEEEEC----------SSTTCCEEEEEEC-----TTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTC
T ss_pred CEEEeeeEec----------CCCCCCCCEeEEC-----CCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCc
Confidence 5432111000 0013357889999 99998887764 789999987765555321 22221
Q ss_pred -cccC------ceeEEE-EcCCCCEEEEecCCC------cEEEEEec-CCceeee----ecCCCCCCccccccCCCccee
Q 021036 240 -AHDQ------VVTGLA-WAFDGCCLYSCSQDN------FVRSWIFH-GNSLSQV----SIPTNTPGLQSCTDLPDAFVS 300 (318)
Q Consensus 240 -~h~~------~v~~~~-~~~~~~~l~s~~~d~------~v~iwd~~-~~~~~~~----~~~~~~~~~~~~~~~~~h~~~ 300 (318)
+|.. .+..++ |+|+|++|++++.+. .|.+|++. ++.+..+ .... ..
T Consensus 244 ~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~---------------~~ 308 (365)
T 1jof_A 244 PDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPT---------------SG 308 (365)
T ss_dssp CCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSS---------------CC
T ss_pred CCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCC---------------CC
Confidence 2222 578999 999999887765432 89999996 4554431 1111 13
Q ss_pred eeEEEEcC---CCcEEEEEe
Q 021036 301 CLGMAVSP---GNLVVAMVQ 317 (318)
Q Consensus 301 v~~v~~sp---~~~~l~~~~ 317 (318)
+..++|+| ||++|+++.
T Consensus 309 ~~~~a~sp~~~dg~~l~v~~ 328 (365)
T 1jof_A 309 GHSNAVSPCPWSDEWMAITD 328 (365)
T ss_dssp TTCCCEEECTTCTTEEEEEC
T ss_pred cccceecCCCcCCCEEEEEE
Confidence 46788999 899888763
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2.7e-15 Score=127.91 Aligned_cols=174 Identities=13% Similarity=0.017 Sum_probs=114.0
Q ss_pred cccCCCCCccEEE-EecCCCcEEEEEccCCcc------ccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCc
Q 021036 76 PQNGSSNWFSILA-VGGRSGKVSLWRICVPKC------YSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQV 148 (318)
Q Consensus 76 ~~~~~s~~~~~l~-~g~~dg~i~iw~~~~~~~------~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~ 148 (318)
.+++++|+|++|+ ++..++.|++|++..... +.. ..........+......++| +++|+
T Consensus 158 ~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~~~~~-------spdg~ 223 (361)
T 3scy_A 158 HCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLT-------KGTPEAFKVAPGSGPRHLIF-------NSDGK 223 (361)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEE-------EEEEEEEECCTTCCEEEEEE-------CTTSS
T ss_pred eEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceee-------cccccceecCCCCCCeEEEE-------cCCCC
Confidence 4445555557554 455688999999875431 100 00001112233456789999 89999
Q ss_pred EEEEEe-CCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCC--CcEEEeee
Q 021036 149 LLVTGS-SDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGS--GSFDLWKC 225 (318)
Q Consensus 149 ~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~d--g~i~vw~~ 225 (318)
++++++ .++.|.+||+.+++.......... ..+......++|+ |+|++|++++.+ +.|.+|++
T Consensus 224 ~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~---------~~~~~~~~~i~~s-----pdg~~l~v~~~~~~~~i~v~~~ 289 (361)
T 3scy_A 224 FAYLINEIGGTVIAFRYADGMLDEIQTVAAD---------TVNAQGSGDIHLS-----PDGKYLYASNRLKADGVAIFKV 289 (361)
T ss_dssp EEEEEETTTCEEEEEEEETTEEEEEEEEESC---------SSCCCCEEEEEEC-----TTSSEEEEEECSSSCEEEEEEE
T ss_pred EEEEEcCCCCeEEEEEecCCceEEeEEEecC---------CCCCCCcccEEEC-----CCCCEEEEECCCCCCEEEEEEE
Confidence 887777 689999999986643221111100 1112245789999 999988776654 89999987
Q ss_pred ccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEec-CCCcEEEEEec--CCceee
Q 021036 226 DISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCS-QDNFVRSWIFH--GNSLSQ 278 (318)
Q Consensus 226 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~v~iwd~~--~~~~~~ 278 (318)
+..+++...+..+.. ...+..++|+|+|++|++++ .++.|.+|++. ++++..
T Consensus 290 ~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~ 344 (361)
T 3scy_A 290 DETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTD 344 (361)
T ss_dssp CTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred cCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEee
Confidence 766666556666554 56788999999999888776 67899997664 555544
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.73 E-value=4.1e-15 Score=126.74 Aligned_cols=199 Identities=8% Similarity=0.043 Sum_probs=118.7
Q ss_pred cEEEEe-cCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEe-CCCcEEEE
Q 021036 85 SILAVG-GRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS-SDGSVRIW 162 (318)
Q Consensus 85 ~~l~~g-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~-~d~~v~iw 162 (318)
++|+++ ..++.|.+|++.....+..........+.-......+...+.+++| +++|++|++++ .++.|.+|
T Consensus 110 ~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-------spdg~~l~~~~~~~~~v~v~ 182 (361)
T 3scy_A 110 KNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRI-------TPDGKYLLADDLGTDQIHKF 182 (361)
T ss_dssp SEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEE-------CTTSSEEEEEETTTTEEEEE
T ss_pred CEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEE-------CCCCCEEEEEeCCCCEEEEE
Confidence 555555 4688999999975432210000000000000001112345688999 89998666655 58899999
Q ss_pred ECCCcce------eeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe-CCCcEEEeeeccCCCeeeEe
Q 021036 163 DGYIQEL------QKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK-GSGSFDLWKCDISCNKFDKV 235 (318)
Q Consensus 163 d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~ 235 (318)
++..... +... ... ..........+..++|+ |+|+++++++ .++.|.+|+++ +++...+
T Consensus 183 ~~~~~~~~~~~~~l~~~-~~~------~~~~~~~~~~~~~~~~s-----pdg~~l~v~~~~~~~v~v~~~~--~g~~~~~ 248 (361)
T 3scy_A 183 NINPNANADNKEKFLTK-GTP------EAFKVAPGSGPRHLIFN-----SDGKFAYLINEIGGTVIAFRYA--DGMLDEI 248 (361)
T ss_dssp EECTTCCTTTCCCCEEE-EEE------EEEECCTTCCEEEEEEC-----TTSSEEEEEETTTCEEEEEEEE--TTEEEEE
T ss_pred EEcCCCCcccccceeec-ccc------cceecCCCCCCeEEEEc-----CCCCEEEEEcCCCCeEEEEEec--CCceEEe
Confidence 9875432 1100 000 00001123356789999 9999887776 68999999655 5554444
Q ss_pred eeee---cccCceeEEEEcCCCCEEEEecC--CCcEEEEEec--CCceeeeecCCCCCCccccccCCCcceeeeEEEEcC
Q 021036 236 GSYN---AHDQVVTGLAWAFDGCCLYSCSQ--DNFVRSWIFH--GNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSP 308 (318)
Q Consensus 236 ~~~~---~h~~~v~~~~~~~~~~~l~s~~~--d~~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp 308 (318)
..+. .+...+..++|+|+|++|+++.. ++.|.+|++. ++....+...+.. ..+.+++|+|
T Consensus 249 ~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g-------------~~~~~~~~sp 315 (361)
T 3scy_A 249 QTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTG-------------IHPRNFIITP 315 (361)
T ss_dssp EEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECS-------------SCCCEEEECT
T ss_pred EEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCC-------------CCCceEEECC
Confidence 4433 23345689999999998866655 4899999996 3443322211111 2567999999
Q ss_pred CCcEEEEEe
Q 021036 309 GNLVVAMVQ 317 (318)
Q Consensus 309 ~~~~l~~~~ 317 (318)
||++|+++.
T Consensus 316 dg~~l~~~~ 324 (361)
T 3scy_A 316 NGKYLLVAC 324 (361)
T ss_dssp TSCEEEEEE
T ss_pred CCCEEEEEE
Confidence 999888764
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.3e-17 Score=151.58 Aligned_cols=230 Identities=8% Similarity=-0.033 Sum_probs=145.1
Q ss_pred ceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecC------
Q 021036 19 PTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGR------ 92 (318)
Q Consensus 19 ~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~------ 92 (318)
.++..+.|+++++||+.+++....+..... ....+..++|+|++ ++|+.++.
T Consensus 28 ~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~SpDg------------------~~la~~~~~~~~~~ 85 (719)
T 1z68_A 28 EYLHQSADNNIVLYNIETGQSYTILSNRTM----KSVNASNYGLSPDR------------------QFVYLESDYSKLWR 85 (719)
T ss_dssp EEEEECTTSCEEEEESSSCCEEEEECHHHH----HTTTCSEEEECTTS------------------SEEEEEEEEEECSS
T ss_pred eEEEEcCCCCEEEEEcCCCcEEEEEccccc----cccceeeEEECCCC------------------CeEEEEecCceeEE
Confidence 466667899999999999886554443211 00123457888877 88888876
Q ss_pred ---CCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcce
Q 021036 93 ---SGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQEL 169 (318)
Q Consensus 93 ---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 169 (318)
++.|++||+++++... ...+ ...+..++| +|+|+.|+.+. |+.|++||+.+++.
T Consensus 86 ~s~~~~i~~~d~~~g~~~~------------~~~l---~~~~~~~~~-------SPDG~~la~~~-~~~i~~~~~~~g~~ 142 (719)
T 1z68_A 86 YSYTATYYIYDLSNGEFVR------------GNEL---PRPIQYLCW-------SPVGSKLAYVY-QNNIYLKQRPGDPP 142 (719)
T ss_dssp SCEEEEEEEEETTTTEECC------------SSCC---CSSBCCEEE-------CSSTTCEEEEE-TTEEEEESSTTSCC
T ss_pred eecceEEEEEECCCCcccc------------ceec---CcccccceE-------CCCCCEEEEEE-CCeEEEEeCCCCCc
Confidence 7899999999865210 0112 246888999 99999999886 78999999988766
Q ss_pred eeeecccccccccceeeeeecc---------cceeEEEEeeccCCCCceEEEEEeCCC----------------------
Q 021036 170 QKSAEAHCVPFSLLKEVVTVNT---------VPISVLSLILPVQSPRLMLLAVGKGSG---------------------- 218 (318)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~---------~~v~~l~~~~~~~~~~~~~l~~~~~dg---------------------- 218 (318)
.......... .+..++. .....++|+ |||+.|++++.|.
T Consensus 143 ~~l~~~~~~~-----~v~~g~~~~v~~ee~~~~~~~~~wS-----PDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 212 (719)
T 1z68_A 143 FQITFNGREN-----KIFNGIPDWVYEEEMLATKYALWWS-----PNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINI 212 (719)
T ss_dssp EECCCCCBTT-----TEEESSCCHHHHHHTTCSSCCEEEC-----TTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEE
T ss_pred EEEecCCCcC-----CeEcccccceeeeecccCcccEEEC-----CCCCEEEEEEECCCCCceEEeeccCCCCCccceee
Confidence 5432111100 0011111 122578999 9999999987552
Q ss_pred ------------cEEEeeeccCCCeee---Ee---eeeecccCceeEEEEcCCCCEEEEecCC----CcEEEEE----ec
Q 021036 219 ------------SFDLWKCDISCNKFD---KV---GSYNAHDQVVTGLAWAFDGCCLYSCSQD----NFVRSWI----FH 272 (318)
Q Consensus 219 ------------~i~vw~~~~~~~~~~---~~---~~~~~h~~~v~~~~~~~~~~~l~s~~~d----~~v~iwd----~~ 272 (318)
.|++| +..+++.. .+ ..+.+|...+..++|+||++++++.... ..|.+|| +.
T Consensus 213 ~yp~~g~~~~~~~l~~~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~ 290 (719)
T 1z68_A 213 PYPKAGAKNPVVRIFII--DTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQ 290 (719)
T ss_dssp ECCBTTSCCCEEEEEEE--ESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSS
T ss_pred cCCCCCCCCCeeEEEEE--ECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCC
Confidence 66777 55554321 11 1234577889999999998777764322 2488889 66
Q ss_pred CCceeeeecCCCCCCccccccCCCcceeee-----EEEEcCCCcEEEE
Q 021036 273 GNSLSQVSIPTNTPGLQSCTDLPDAFVSCL-----GMAVSPGNLVVAM 315 (318)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-----~v~~sp~~~~l~~ 315 (318)
++....+.... ..+|...+. .++|+|||+.|+.
T Consensus 291 ~g~~~~~~~~~----------~~~~~~~~~~~~~~~~~~spdg~~l~~ 328 (719)
T 1z68_A 291 TWDCPKTQEHI----------EESRTGWAGGFFVSTPVFSYDAISYYK 328 (719)
T ss_dssp SEECCGGGEEE----------EECSSSCSSSSSCCCCEECTTSSCEEE
T ss_pred CCceEEEEecc----------cccCCceEccccCCccEECCCCCeEEE
Confidence 65544332100 001222344 7899999986543
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=3.2e-15 Score=144.51 Aligned_cols=198 Identities=11% Similarity=0.040 Sum_probs=146.5
Q ss_pred Ccc-cccccCCCCCccEEEEecCCCcEE-EEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCc
Q 021036 71 KKY-PVPQNGSSNWFSILAVGGRSGKVS-LWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQV 148 (318)
Q Consensus 71 ~~~-~v~~~~~s~~~~~l~~g~~dg~i~-iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~ 148 (318)
|.. .+..+.|+ +++.|+.++.++.+. +|+..+++ . ..+.+|...+..++| +++|+
T Consensus 335 ~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~--------------~-~~l~~~~~~~~~~~~-------SpDG~ 391 (1045)
T 1k32_A 335 PLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK--------------A-EKFEENLGNVFAMGV-------DRNGK 391 (1045)
T ss_dssp CSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC--------------E-EECCCCCCSEEEEEE-------CTTSS
T ss_pred CCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC--------------c-eEecCCccceeeeEE-------CCCCC
Confidence 444 67888999 999999988888888 88988643 2 233477789999999 99999
Q ss_pred EEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCC----------
Q 021036 149 LLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSG---------- 218 (318)
Q Consensus 149 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg---------- 218 (318)
+|++++.++.|++||+.+++....... +...+..++|+ |+|++|++++.++
T Consensus 392 ~la~~~~~~~v~~~d~~tg~~~~~~~~--------------~~~~v~~~~~S-----pDG~~la~~~~~~~~~~~~~~~~ 452 (1045)
T 1k32_A 392 FAVVANDRFEIMTVDLETGKPTVIERS--------------REAMITDFTIS-----DNSRFIAYGFPLKHGETDGYVMQ 452 (1045)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEEC--------------SSSCCCCEEEC-----TTSCEEEEEEEECSSTTCSCCEE
T ss_pred EEEEECCCCeEEEEECCCCceEEeccC--------------CCCCccceEEC-----CCCCeEEEEecCccccccCCCCC
Confidence 999999999999999998876655433 33477889999 9999998887654
Q ss_pred cEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCce--------eeeecCCCCCC---
Q 021036 219 SFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSL--------SQVSIPTNTPG--- 287 (318)
Q Consensus 219 ~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~--------~~~~~~~~~~~--- 287 (318)
.|++| +..+++ +..+..|...+..++|+|+|++|++++.++...+|+...... ..+...+....
T Consensus 453 ~i~l~--d~~~g~---~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (1045)
T 1k32_A 453 AIHVY--DMEGRK---IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTK 527 (1045)
T ss_dssp EEEEE--ETTTTE---EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGG
T ss_pred eEEEE--ECCCCc---EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccc
Confidence 89999 555554 445667888889999999999999999988888887653222 11111111110
Q ss_pred --------------cc----ccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 288 --------------LQ----SCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 288 --------------~~----~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
+. ....+..|.+.+..++++|||+++++
T Consensus 528 ~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~ 573 (1045)
T 1k32_A 528 LVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYS 573 (1045)
T ss_dssp CCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEE
T ss_pred cCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEE
Confidence 11 11234457788999999999987774
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.71 E-value=4.8e-15 Score=124.61 Aligned_cols=205 Identities=12% Similarity=0.022 Sum_probs=139.0
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhc-cccccccceeeeecccccCCCCcccccccCCCCCccEEEEec---
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYA-SRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGG--- 91 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~--- 91 (318)
.....++++.++.+.+||+.+++.+..+...... +... ...++|+|++ ++|+++.
T Consensus 45 g~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~s~dg------------------~~l~~~~~~~ 103 (337)
T 1pby_B 45 GRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKS---LFGAALSPDG------------------KTLAIYESPV 103 (337)
T ss_dssp SSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEEC---TTCEEECTTS------------------SEEEEEEEEE
T ss_pred CCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccccc---ccceEECCCC------------------CEEEEEeccc
Confidence 3344567777899999999988765544431100 0111 2236666666 8888875
Q ss_pred ---------CCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEE
Q 021036 92 ---------RSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIW 162 (318)
Q Consensus 92 ---------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iw 162 (318)
.++.|.+||..+++ .+..+.. ...+.++.| ++++++|+++ ++.|.+|
T Consensus 104 ~~~~~~~~~~~~~i~v~d~~~~~--------------~~~~~~~-~~~~~~~~~-------s~dg~~l~~~--~~~i~~~ 159 (337)
T 1pby_B 104 RLELTHFEVQPTRVALYDAETLS--------------RRKAFEA-PRQITMLAW-------ARDGSKLYGL--GRDLHVM 159 (337)
T ss_dssp EECSSCEEECCCEEEEEETTTTE--------------EEEEEEC-CSSCCCEEE-------CTTSSCEEEE--SSSEEEE
T ss_pred ccccccccccCceEEEEECCCCc--------------EEEEEeC-CCCcceeEE-------CCCCCEEEEe--CCeEEEE
Confidence 57999999998754 3344433 345788899 8999988887 6899999
Q ss_pred ECCCcceeeeecccc--ccc--ccc-------------------------------------e-----------eeeeec
Q 021036 163 DGYIQELQKSAEAHC--VPF--SLL-------------------------------------K-----------EVVTVN 190 (318)
Q Consensus 163 d~~~~~~~~~~~~~~--~~~--~~~-------------------------------------~-----------~~~~~~ 190 (318)
|+.+++....+.... .+. ... . .....+
T Consensus 160 d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~ 239 (337)
T 1pby_B 160 DPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIM 239 (337)
T ss_dssp ETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEEC
T ss_pred ECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCC
Confidence 999887765554332 110 000 0 001122
Q ss_pred ccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEE
Q 021036 191 TVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWI 270 (318)
Q Consensus 191 ~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd 270 (318)
...+..++|+ |++++++++ ++.|++| +..+++ .+..+.. ...+.+++|+|+|++|++++.++.|.+||
T Consensus 240 ~~~~~~~~~s-----~dg~~l~~~--~~~v~~~--d~~~~~--~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~i~v~d 307 (337)
T 1pby_B 240 DVFYFSTAVN-----PAKTRAFGA--YNVLESF--DLEKNA--SIKRVPL-PHSYYSVNVSTDGSTVWLGGALGDLAAYD 307 (337)
T ss_dssp SSCEEEEEEC-----TTSSEEEEE--ESEEEEE--ETTTTE--EEEEEEC-SSCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred CCceeeEEEC-----CCCCEEEEe--CCeEEEE--ECCCCc--CcceecC-CCceeeEEECCCCCEEEEEcCCCcEEEEE
Confidence 2345678898 999999888 7899999 555665 3444442 34678999999999999889999999999
Q ss_pred ecCCcee
Q 021036 271 FHGNSLS 277 (318)
Q Consensus 271 ~~~~~~~ 277 (318)
+.+++..
T Consensus 308 ~~~~~~~ 314 (337)
T 1pby_B 308 AETLEKK 314 (337)
T ss_dssp TTTCCEE
T ss_pred CcCCcEE
Confidence 9887654
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.4e-16 Score=146.55 Aligned_cols=177 Identities=14% Similarity=0.081 Sum_probs=122.6
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccc---cEEEEEeeeecCCCCCCCcEEEEEeC-----
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNS---WITSISLAVLSSDSSNPQVLLVTGSS----- 155 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~p~~~~~~~~~~~l~s~~~----- 155 (318)
+++++++ .|+.|++||+.+++ ....+..|.. .+.+++| +|+|++|++++.
T Consensus 27 g~~~~~~-~d~~i~~~~~~~g~--------------~~~~~~~~~~~~~~~~~~~~-------SpDg~~la~~~~~~~~~ 84 (719)
T 1z68_A 27 QEYLHQS-ADNNIVLYNIETGQ--------------SYTILSNRTMKSVNASNYGL-------SPDRQFVYLESDYSKLW 84 (719)
T ss_dssp SEEEEEC-TTSCEEEEESSSCC--------------EEEEECHHHHHTTTCSEEEE-------CTTSSEEEEEEEEEECS
T ss_pred CeEEEEc-CCCCEEEEEcCCCc--------------EEEEEccccccccceeeEEE-------CCCCCeEEEEecCceeE
Confidence 3766665 59999999999865 3334444433 4899999 999999998876
Q ss_pred ----CCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCe
Q 021036 156 ----DGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNK 231 (318)
Q Consensus 156 ----d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~ 231 (318)
++.|++||+.+++....... ...+..++|+ |||+.|+.+. ++.|++| +..+++
T Consensus 85 ~~s~~~~i~~~d~~~g~~~~~~~l---------------~~~~~~~~~S-----PDG~~la~~~-~~~i~~~--~~~~g~ 141 (719)
T 1z68_A 85 RYSYTATYYIYDLSNGEFVRGNEL---------------PRPIQYLCWS-----PVGSKLAYVY-QNNIYLK--QRPGDP 141 (719)
T ss_dssp SSCEEEEEEEEETTTTEECCSSCC---------------CSSBCCEEEC-----SSTTCEEEEE-TTEEEEE--SSTTSC
T ss_pred EeecceEEEEEECCCCccccceec---------------CcccccceEC-----CCCCEEEEEE-CCeEEEE--eCCCCC
Confidence 78999999998875211111 1257789999 9999999986 7899999 555554
Q ss_pred eeEeeeeecccCce-----------------eEEEEcCCCCEEEEecCCC------------------------------
Q 021036 232 FDKVGSYNAHDQVV-----------------TGLAWAFDGCCLYSCSQDN------------------------------ 264 (318)
Q Consensus 232 ~~~~~~~~~h~~~v-----------------~~~~~~~~~~~l~s~~~d~------------------------------ 264 (318)
...+. ..++...| .+++|+|||++|++++.|.
T Consensus 142 ~~~l~-~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~ 220 (719)
T 1z68_A 142 PFQIT-FNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAK 220 (719)
T ss_dssp CEECC-CCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSC
T ss_pred cEEEe-cCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCC
Confidence 22221 12222222 4899999999999887652
Q ss_pred ----cEEEEEecCCcee---eeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 265 ----FVRSWIFHGNSLS---QVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 265 ----~v~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
.|++||+.++... .+.. + ..+.+|...+.+++|+||++++++
T Consensus 221 ~~~~~l~~~d~~~~~~~~~~~~~~-~--------~~~~~~~~~~~~~~~SpD~~~~~~ 269 (719)
T 1z68_A 221 NPVVRIFIIDTTYPAYVGPQEVPV-P--------AMIASSDYYFSWLTWVTDERVCLQ 269 (719)
T ss_dssp CCEEEEEEEESSCHHHHCCEECCC-C--------HHHHTSCEEEEEEEESSSSEEEEE
T ss_pred CCeeEEEEEECCCCCccceeEccC-C--------ccCCCCcceEEEeEEeCCCeEEEE
Confidence 6788888776542 1110 0 112346678999999999987776
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=4.2e-14 Score=120.77 Aligned_cols=187 Identities=11% Similarity=0.032 Sum_probs=119.6
Q ss_pred cEEEEecCCCcEEEEEcc-CCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcE--EEEEe-------
Q 021036 85 SILAVGGRSGKVSLWRIC-VPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVL--LVTGS------- 154 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~--l~s~~------- 154 (318)
++|++++.+ .|.+|++. +++. ..+.....+ +....++| +++|++ ++++.
T Consensus 52 ~~l~~~~~~-~v~~~~~~~~g~~------------~~~~~~~~~-g~~~~~~~-------spdg~~l~~~~~~~~~~~~~ 110 (365)
T 1jof_A 52 KNIYGAAMK-KWSSFAVKSPTEI------------VHEASHPIG-GHPRANDA-------DTNTRAIFLLAAKQPPYAVY 110 (365)
T ss_dssp SEEEEEEBT-EEEEEEEEETTEE------------EEEEEEECC-SSGGGGCT-------TSCCEEEEEEECSSTTCCEE
T ss_pred CEEEEEccc-eEEEEEECCCCCE------------EEeeEeecC-CCCccEEE-------CCCCCEEEEEEecCCcceec
Confidence 888888877 99999997 5432 111111111 22445788 899984 45553
Q ss_pred ------CCCcEEEEECC-CcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe-CCCcEEEeeec
Q 021036 155 ------SDGSVRIWDGY-IQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK-GSGSFDLWKCD 226 (318)
Q Consensus 155 ------~d~~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~-~dg~i~vw~~~ 226 (318)
.++++.+|++. .++....+.... ..+...+..++|+ |+|+++++++ .++.|++|+++
T Consensus 111 ~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~----------~~~~~~~~~~~~s-----pdG~~l~~~~~~~~~v~~~~~~ 175 (365)
T 1jof_A 111 ANPFYKFAGYGNVFSVSETGKLEKNVQNYE----------YQENTGIHGMVFD-----PTETYLYSADLTANKLWTHRKL 175 (365)
T ss_dssp EEEESSSCCEEEEEEECTTCCEEEEEEEEE----------CCTTCCEEEEEEC-----TTSSEEEEEETTTTEEEEEEEC
T ss_pred cceeecCCceEEEEccCCCCcCcceEeeEE----------eCCCCcceEEEEC-----CCCCEEEEEcCCCCEEEEEEEC
Confidence 68999999997 455433322100 0123367899999 9999888776 46799999654
Q ss_pred cCCCeeeEeeeee--cccCceeEEEEcCCCCEEEEecC-CCcEEEEEec--CCcee----eeecCCCCCCccccccCCCc
Q 021036 227 ISCNKFDKVGSYN--AHDQVVTGLAWAFDGCCLYSCSQ-DNFVRSWIFH--GNSLS----QVSIPTNTPGLQSCTDLPDA 297 (318)
Q Consensus 227 ~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~-d~~v~iwd~~--~~~~~----~~~~~~~~~~~~~~~~~~~h 297 (318)
. +++...+..+. .|...+..++|+|+|+++++++. ++.|.+|++. ++.+. .+...+. ...+|
T Consensus 176 ~-~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~--------~~~g~ 246 (365)
T 1jof_A 176 A-SGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPP--------GIPDR 246 (365)
T ss_dssp T-TSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCT--------TCCCB
T ss_pred C-CCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCC--------CcCCc
Confidence 2 45543444443 24567899999999998877764 6899999876 34432 1221111 11122
Q ss_pred ce------eeeEEE-EcCCCcEEEEE
Q 021036 298 FV------SCLGMA-VSPGNLVVAMV 316 (318)
Q Consensus 298 ~~------~v~~v~-~sp~~~~l~~~ 316 (318)
.. .+..++ |+|||++|+++
T Consensus 247 ~~~~~~~~~~~~i~~~spdG~~l~v~ 272 (365)
T 1jof_A 247 DPETGKGLYRADVCALTFSGKYMFAS 272 (365)
T ss_dssp CTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred ccccccccccccEEEECCCCCEEEEE
Confidence 22 578999 99999988764
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.66 E-value=2.7e-15 Score=136.11 Aligned_cols=176 Identities=11% Similarity=0.000 Sum_probs=115.9
Q ss_pred ccccCCCCCccEEEEecC-CCcEEEEEccCCccccccccccCCceeEEeeecccc-ccEEEEEeeeecCCCCCCCcEEEE
Q 021036 75 VPQNGSSNWFSILAVGGR-SGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHN-SWITSISLAVLSSDSSNPQVLLVT 152 (318)
Q Consensus 75 v~~~~~s~~~~~l~~g~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~p~~~~~~~~~~~l~s 152 (318)
|.++.+++||+.||.++. ||+++||++++++ . +.+..|. ..+..+.| +++ +++++
T Consensus 24 ~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~--------------~-~~lt~~~~~~~~~~~~-------spd-~~l~~ 80 (582)
T 3o4h_A 24 KYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGE--------------T-VKLNREPINSVLDPHY-------GVG-RVILV 80 (582)
T ss_dssp EEEEEEEETTTEEEEEEEETTEEEEEEEETTE--------------E-EECCSSCCSEECEECT-------TCS-EEEEE
T ss_pred hheeecCCCCCeEEEEEccCCceeEEEEcCCC--------------c-EeeecccccccccccC-------CCC-eEEEE
Confidence 444444444599998876 9999999986643 2 3344444 68999999 788 78887
Q ss_pred EeC---CCcEEEEECCC--cceeeeecccccccccceeeeeecccceeEEEEeeccCCCCce--EEEEEeCCCcEEEeee
Q 021036 153 GSS---DGSVRIWDGYI--QELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLM--LLAVGKGSGSFDLWKC 225 (318)
Q Consensus 153 ~~~---d~~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~--~l~~~~~dg~i~vw~~ 225 (318)
++. +....+|.+.. ......+.... .+...+|+ |+|+ .+++++ ++.+.+|+
T Consensus 81 ~~~~~g~~~~~l~~~~~~~~g~~~~l~~~~---------------~~~~~~~s-----~dg~~~~~~s~~-~~~~~l~d- 138 (582)
T 3o4h_A 81 RDVSKGAEQHALFKVNTSRPGEEQRLEAVK---------------PMRILSGV-----DTGEAVVFTGAT-EDRVALYA- 138 (582)
T ss_dssp EECSTTSCCEEEEEEETTSTTCCEECTTSC---------------SBEEEEEE-----ECSSCEEEEEEC-SSCEEEEE-
T ss_pred eccCCCCcceEEEEEeccCCCccccccCCC---------------CceeeeeC-----CCCCeEEEEecC-CCCceEEE-
Confidence 775 45566665433 21111222111 23355777 6664 444444 45556994
Q ss_pred ccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCC----CcEEEEEecCCceeeeecCCCCCCccccccCCCcceee
Q 021036 226 DISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQD----NFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSC 301 (318)
Q Consensus 226 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 301 (318)
+.+++.+.+ ..+.. .+++|+|||++|++++.| +.|++||+.++....+..+ ...+
T Consensus 139 -~~~g~~~~l---~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~---------------~~~~ 197 (582)
T 3o4h_A 139 -LDGGGLREL---ARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSG---------------EGSF 197 (582)
T ss_dssp -EETTEEEEE---EEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCS---------------SCEE
T ss_pred -ccCCcEEEe---ecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecC---------------CCcc
Confidence 456653332 22333 789999999999988777 7899999988877655333 3478
Q ss_pred eEEEEcCCCcEEEEE
Q 021036 302 LGMAVSPGNLVVAMV 316 (318)
Q Consensus 302 ~~v~~sp~~~~l~~~ 316 (318)
..++|+|||++|+++
T Consensus 198 ~~~~~SpDG~~l~~~ 212 (582)
T 3o4h_A 198 SSASISPGMKVTAGL 212 (582)
T ss_dssp EEEEECTTSCEEEEE
T ss_pred ccceECCCCCEEEEc
Confidence 999999999999865
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.66 E-value=4.1e-15 Score=138.73 Aligned_cols=192 Identities=8% Similarity=-0.053 Sum_probs=124.9
Q ss_pred CCceeEeecCCCCCCCceecchhccccccccc--eeeeecccccCCCCcccccccCCCCCccEEEEecCC---------C
Q 021036 26 SKGNSITKIPSNCCLPLITADQYASRSAMLHS--LAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRS---------G 94 (318)
Q Consensus 26 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~d---------g 94 (318)
|++|++||+.++++...+...... ...+ ..+.|+|++ ++|+.++.+ +
T Consensus 35 ~~~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Spdg------------------~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 35 ENNILVFNAEYGNSSVFLENSTFD----EFGHSINDYSISPDG------------------QFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp TTEEEEEETTTCCEEEEECTTTTT----TCCSCCCEEEECTTS------------------SEEEEEEEEEECSSSCEEE
T ss_pred CCcEEEEECCCCceEEEEechhhh----hhcccccceEECCCC------------------CEEEEEECCeeeEEEccce
Confidence 999999999999875554432211 1111 125666666 888888776 5
Q ss_pred cEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeec
Q 021036 95 KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAE 174 (318)
Q Consensus 95 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 174 (318)
.+.+||+++++. ..+..|...+..++| +|+|+.|+.+. |+.|++|++.+++......
T Consensus 93 ~~~~~d~~~~~~---------------~~l~~~~~~~~~~~~-------SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~ 149 (740)
T 4a5s_A 93 SYDIYDLNKRQL---------------ITEERIPNNTQWVTW-------SPVGHKLAYVW-NNDIYVKIEPNLPSYRITW 149 (740)
T ss_dssp EEEEEETTTTEE---------------CCSSCCCTTEEEEEE-------CSSTTCEEEEE-TTEEEEESSTTSCCEECCS
T ss_pred EEEEEECCCCcE---------------EEcccCCCcceeeEE-------CCCCCEEEEEE-CCeEEEEECCCCceEEEcC
Confidence 667999998642 345667788999999 99999998884 6899999998876543221
Q ss_pred -ccccccccceeeeeecc---------cceeEEEEeeccCCCCceEEEEEeCCC--------------------------
Q 021036 175 -AHCVPFSLLKEVVTVNT---------VPISVLSLILPVQSPRLMLLAVGKGSG-------------------------- 218 (318)
Q Consensus 175 -~~~~~~~~~~~~~~~~~---------~~v~~l~~~~~~~~~~~~~l~~~~~dg-------------------------- 218 (318)
++.. ....++. .....+.|+ |||+.||.++.|.
T Consensus 150 ~g~~~------~~~~g~~~~v~~ee~~~~~~~~~wS-----pDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~y 218 (740)
T 4a5s_A 150 TGKED------IIYNGITDWVYEEEVFSAYSALWWS-----PNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPY 218 (740)
T ss_dssp CCBTT------TEEESBCCHHHHHHTSSSSBCEEEC-----TTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEEC
T ss_pred CCCcc------ceecCcccccccchhcCCCcceEEC-----CCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecC
Confidence 1110 0001111 122457898 9999998875332
Q ss_pred ----------cEEEeeeccCC---C---eeeEeee---eecccCceeEEEEcCCCCEEEEec----CCCcEEEEEecCCc
Q 021036 219 ----------SFDLWKCDISC---N---KFDKVGS---YNAHDQVVTGLAWAFDGCCLYSCS----QDNFVRSWIFHGNS 275 (318)
Q Consensus 219 ----------~i~vw~~~~~~---~---~~~~~~~---~~~h~~~v~~~~~~~~~~~l~s~~----~d~~v~iwd~~~~~ 275 (318)
.|++| ++.+ + +...+.. +.+|...+..++|+|||+.++... .+..|++||+.++.
T Consensus 219 p~~G~~~~~~~l~v~--d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 219 PKAGAVNPTVKFFVV--NTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp CBTTSCCCEEEEEEE--ETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred CCCcCcCCeeEEEEE--ECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence 35556 4444 4 2111111 013677789999999999665542 34479999998876
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-14 Score=131.20 Aligned_cols=162 Identities=9% Similarity=-0.043 Sum_probs=118.0
Q ss_pred EEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCC----CcEEE
Q 021036 86 ILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSD----GSVRI 161 (318)
Q Consensus 86 ~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d----~~v~i 161 (318)
.+++.+.++.+.+||+++++. .+ +..+.. .++.| +|+|++|++++.| +.|++
T Consensus 124 ~~~~s~~~~~~~l~d~~~g~~--------------~~-l~~~~~--~~~~~-------spDG~~la~~~~~~~~~~~i~~ 179 (582)
T 3o4h_A 124 VVFTGATEDRVALYALDGGGL--------------RE-LARLPG--FGFVS-------DIRGDLIAGLGFFGGGRVSLFT 179 (582)
T ss_dssp EEEEEECSSCEEEEEEETTEE--------------EE-EEEESS--CEEEE-------EEETTEEEEEEEEETTEEEEEE
T ss_pred EEEEecCCCCceEEEccCCcE--------------EE-eecCCC--ceEEE-------CCCCCEEEEEEEcCCCCeEEEE
Confidence 344444445556999988642 22 222222 78899 8999999988877 78999
Q ss_pred EECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCC--cEEEeeeccCCCeeeEeeeee
Q 021036 162 WDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSG--SFDLWKCDISCNKFDKVGSYN 239 (318)
Q Consensus 162 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg--~i~vw~~~~~~~~~~~~~~~~ 239 (318)
||+.+++.. .+.. +...+..++|+ |||+.|+++..++ .|++| +..+++. . .+.
T Consensus 180 ~d~~~g~~~-~l~~--------------~~~~~~~~~~S-----pDG~~l~~~~~~~~~~i~~~--d~~~~~~--~-~~~ 234 (582)
T 3o4h_A 180 SNLSSGGLR-VFDS--------------GEGSFSSASIS-----PGMKVTAGLETAREARLVTV--DPRDGSV--E-DLE 234 (582)
T ss_dssp EETTTCCCE-EECC--------------SSCEEEEEEEC-----TTSCEEEEEECSSCEEEEEE--CTTTCCE--E-ECC
T ss_pred EcCCCCCce-Eeec--------------CCCccccceEC-----CCCCEEEEccCCCeeEEEEE--cCCCCcE--E-Ecc
Confidence 999887654 2322 23367889999 9999999888888 67777 6667663 2 556
Q ss_pred cccCceeEEE--------EcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCc
Q 021036 240 AHDQVVTGLA--------WAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNL 311 (318)
Q Consensus 240 ~h~~~v~~~~--------~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 311 (318)
+|...+..++ |+|||.++++++.|+++++|++ ++... .. .+.+.+++|+ +++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~--------------~~~v~~~~~s-dg~ 294 (582)
T 3o4h_A 235 LPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---AP--------------QGNHGRVVLW-RGK 294 (582)
T ss_dssp CSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CC--------------SSEEEEEEEE-TTE
T ss_pred CCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cC--------------CCceEEEEec-CCE
Confidence 6777777777 9999998999999999999999 44332 11 1367899999 999
Q ss_pred EEEEE
Q 021036 312 VVAMV 316 (318)
Q Consensus 312 ~l~~~ 316 (318)
+++++
T Consensus 295 ~l~~~ 299 (582)
T 3o4h_A 295 LVTSH 299 (582)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88765
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.62 E-value=5.2e-14 Score=118.90 Aligned_cols=162 Identities=9% Similarity=-0.010 Sum_probs=111.3
Q ss_pred ccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeecccc-ccEEEEEeeeecCCCCCCCcEE-EEEe
Q 021036 77 QNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHN-SWITSISLAVLSSDSSNPQVLL-VTGS 154 (318)
Q Consensus 77 ~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~p~~~~~~~~~~~l-~s~~ 154 (318)
.+++++++.++++++.++.|++||..+++ .+..+..+. ..+..++| +++++++ +++.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~--------------~~~~~~~~~~~~~~~~~~-------s~dg~~~~v~~~ 62 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDT--------------VYKSCVMPDKFGPGTAMM-------APDNRTAYVLNN 62 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTE--------------EEEEEECSSCCSSCEEEE-------CTTSSEEEEEET
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCc--------------EEEEEecCCCCCCceeEE-------CCCCCEEEEEeC
Confidence 34556667899999999999999998854 344444332 25678999 8888765 4555
Q ss_pred CCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCC------------CcEEE
Q 021036 155 SDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGS------------GSFDL 222 (318)
Q Consensus 155 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~d------------g~i~v 222 (318)
.++.|.+||+.+++....+.....+ ......+..++|+ |+|+++++++.+ +.|.+
T Consensus 63 ~~~~i~~~d~~t~~~~~~~~~~~~~--------~~~~~~~~~~~~s-----pdg~~l~~~~~~~~~~~~~~~~~~~~i~~ 129 (349)
T 1jmx_B 63 HYGDIYGIDLDTCKNTFHANLSSVP--------GEVGRSMYSFAIS-----PDGKEVYATVNPTQRLNDHYVVKPPRLEV 129 (349)
T ss_dssp TTTEEEEEETTTTEEEEEEESCCST--------TEEEECSSCEEEC-----TTSSEEEEEEEEEEECSSCEEECCCEEEE
T ss_pred CCCcEEEEeCCCCcEEEEEEccccc--------ccccccccceEEC-----CCCCEEEEEcccccccccccccCCCeEEE
Confidence 7899999999988776655422100 0001246788999 999999998865 89999
Q ss_pred eeeccCCCee-eEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceee
Q 021036 223 WKCDISCNKF-DKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQ 278 (318)
Q Consensus 223 w~~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~ 278 (318)
||+ .+++. +.+..+. +...+.+++|+|+|+ +++++. .|.+||+.+++...
T Consensus 130 ~d~--~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~ 180 (349)
T 1jmx_B 130 FST--ADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTV 180 (349)
T ss_dssp EEG--GGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEE
T ss_pred EEC--CCccccceeeecc-CCCcccceeECCCCc-EEEccC--cEEEEeCCCCceec
Confidence 954 44321 1223333 344688999999999 555543 49999998766543
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=4e-13 Score=113.03 Aligned_cols=199 Identities=11% Similarity=0.017 Sum_probs=130.7
Q ss_pred ccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeee---------ccccccEEEEEeeeecCCC
Q 021036 73 YPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLF---------QAHNSWITSISLAVLSSDS 143 (318)
Q Consensus 73 ~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~---------~~h~~~v~~~~~~p~~~~~ 143 (318)
.....++++++|+++++...++.|++|+.+.... .+..+ .++......+++
T Consensus 91 ~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~-------------~~~~~~~~~~~g~~~~~~~~P~~ia~------- 150 (329)
T 3fvz_A 91 YLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEG-------------PLLILGRSMQPGSDQNHFCQPTDVAV------- 150 (329)
T ss_dssp SSEEEEEECTTSCEEEEETTTTEEEEECTTCSSC-------------CSEEESBTTBCCCSTTCCSSEEEEEE-------
T ss_pred CCceEEEECCCCCEEEEECCCCEEEEEeCCCCeE-------------EEEEecccCCCCCCccccCCCcEEEE-------
Confidence 3455666777779999999999999999864310 11222 234456899999
Q ss_pred CC-CCcEEEEEe-CCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCC-ceEEEEEeCCCcE
Q 021036 144 SN-PQVLLVTGS-SDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPR-LMLLAVGKGSGSF 220 (318)
Q Consensus 144 ~~-~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~-~~~l~~~~~dg~i 220 (318)
++ ++.++++.+ .++.|++|| ..++....+........ ....+......++++ |+ +.++++...++.|
T Consensus 151 ~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~----~~~~~~~~p~gia~d-----~~~g~l~v~d~~~~~I 220 (329)
T 3fvz_A 151 EPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSS----PRPGQFSVPHSLALV-----PHLDQLCVADRENGRI 220 (329)
T ss_dssp CTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSS----CCTTEESCEEEEEEE-----TTTTEEEEEETTTTEE
T ss_pred eCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCC----CCCcccCCCcEEEEE-----CCCCEEEEEECCCCEE
Confidence 77 788888886 689999999 45665555432211000 000111246889999 87 8888888889999
Q ss_pred EEeeeccCCCeeeEeeee--ecccCceeEEEEcC------CCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccc
Q 021036 221 DLWKCDISCNKFDKVGSY--NAHDQVVTGLAWAF------DGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCT 292 (318)
Q Consensus 221 ~vw~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~------~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 292 (318)
++| +..+++ .+..+ ..+...+..++|+| +|..+++...+..|++||+.++.........
T Consensus 221 ~~~--~~~~G~--~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~--------- 287 (329)
T 3fvz_A 221 QCF--KTDTKE--FVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPV--------- 287 (329)
T ss_dssp EEE--ETTTCC--EEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCS---------
T ss_pred EEE--ECCCCc--EEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCC---------
Confidence 999 454555 34444 34566788999999 3333333344568999999887766543211
Q ss_pred cCCCcceeeeEEEEcCCCcEEEEE
Q 021036 293 DLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 293 ~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
.++...+.+|+++|+|.++++.
T Consensus 288 --~~~~~~p~~ia~~~dG~lyvad 309 (329)
T 3fvz_A 288 --RKHFDMPHDIVASEDGTVYIGD 309 (329)
T ss_dssp --SSCCSSEEEEEECTTSEEEEEE
T ss_pred --CCccCCeeEEEECCCCCEEEEE
Confidence 1233467899999999766654
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.60 E-value=9.7e-14 Score=119.23 Aligned_cols=160 Identities=12% Similarity=0.053 Sum_probs=96.1
Q ss_pred cccccEEEEEeeeecCCCCC-CCcEEEEEeCC------CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEE
Q 021036 126 AHNSWITSISLAVLSSDSSN-PQVLLVTGSSD------GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLS 198 (318)
Q Consensus 126 ~h~~~v~~~~~~p~~~~~~~-~~~~l~s~~~d------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 198 (318)
.+...+..+.| +| +|+.|+.+..+ ..|.++|...++...... +. ....+....
T Consensus 185 ~~~~~~~~~~~-------sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~------------~~~~~~~~~ 244 (388)
T 3pe7_A 185 QENQWLGHPIY-------RPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKT-HA------------EGESCTHEF 244 (388)
T ss_dssp EESSCEEEEEE-------ETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCC-CC------------TTEEEEEEE
T ss_pred cCCccccccEE-------CCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeee-CC------------CCcccccce
Confidence 45566888999 88 89888877753 378888876554322211 11 012466778
Q ss_pred EeeccCCCCceEEEEEeC-CC----cEEEeeeccCCCeeeEeeeeecccCc---eeEEEEcCCCCEEEEe---------c
Q 021036 199 LILPVQSPRLMLLAVGKG-SG----SFDLWKCDISCNKFDKVGSYNAHDQV---VTGLAWAFDGCCLYSC---------S 261 (318)
Q Consensus 199 ~~~~~~~~~~~~l~~~~~-dg----~i~vw~~~~~~~~~~~~~~~~~h~~~---v~~~~~~~~~~~l~s~---------~ 261 (318)
|+ |+|+.|+..+. ++ .|++| +..+++.+.+..+.++... ...+.|+|+|+.|+.. .
T Consensus 245 ~s-----pdg~~l~~~~~~~~~~~~~l~~~--d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 317 (388)
T 3pe7_A 245 WV-----PDGSALVYVSYLKGSPDRFIYSA--DPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIE 317 (388)
T ss_dssp EC-----TTSSCEEEEEEETTCCCEEEEEE--CTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------C
T ss_pred EC-----CCCCEEEEEecCCCCCcceEEEE--ecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccC
Confidence 98 99987755442 22 27887 6667665455554432111 2234799999977753 4
Q ss_pred CCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 262 QDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 262 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
.+..|++||+.++....+..+....... ..+....+..++|+|||+.|+..
T Consensus 318 ~~~~i~~~d~~~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~spDg~~l~~~ 368 (388)
T 3pe7_A 318 NDPFLYVFNMKNGTQHRVARHDTSWKVF----EGDRQVTHPHPSFTPDDKQILFT 368 (388)
T ss_dssp CCCEEEEEETTTTEEEEEEECCCCCCCB----TTBSSTTCCCCEECTTSSEEEEE
T ss_pred CCCEEEEEeccCCceEEeccccCccccc----ccccccCCCCccCCCCCCEEEEE
Confidence 5678999999988776665444210000 00000135788999999988754
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=9.6e-13 Score=108.27 Aligned_cols=221 Identities=10% Similarity=0.073 Sum_probs=141.2
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCC-CCCccEEEEecC-CCc
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGS-SNWFSILAVGGR-SGK 95 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~-s~~~~~l~~g~~-dg~ 95 (318)
...++.+.++.|.+||.. ++.+..+.... ....+...+.++++ .++++++++... ++.
T Consensus 42 ~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~-------------------~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~ 101 (286)
T 1q7f_A 42 DIIVADTNNHRIQIFDKE-GRFKFQFGECG-------------------KRDSQLLYPNRVAVVRNSGDIIVTERSPTHQ 101 (286)
T ss_dssp CEEEEEGGGTEEEEECTT-SCEEEEECCBS-------------------SSTTCBSSEEEEEEETTTTEEEEEECGGGCE
T ss_pred CEEEEECCCCEEEEECCC-CcEEEEecccC-------------------CCcccccCceEEEEEcCCCeEEEEcCCCCCE
Confidence 445566778888888865 33322221100 00112222333344 233467666643 889
Q ss_pred EEEEEccCCccccccccccCCceeEEeeec-cccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeec
Q 021036 96 VSLWRICVPKCYSVEDCKVPTTAVLIGLFQ-AHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAE 174 (318)
Q Consensus 96 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 174 (318)
|++|+. +++ .+..+. .+...+.++++ .++++++++...++.|.+||.. ++....+.
T Consensus 102 i~~~d~-~g~--------------~~~~~~~~~~~~~~~i~~-------~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~ 158 (286)
T 1q7f_A 102 IQIYNQ-YGQ--------------FVRKFGATILQHPRGVTV-------DNKGRIIVVECKVMRVIIFDQN-GNVLHKFG 158 (286)
T ss_dssp EEEECT-TSC--------------EEEEECTTTCSCEEEEEE-------CTTSCEEEEETTTTEEEEECTT-SCEEEEEE
T ss_pred EEEECC-CCc--------------EEEEecCccCCCceEEEE-------eCCCCEEEEECCCCEEEEEcCC-CCEEEEeC
Confidence 999994 432 333342 34457899999 8889888888888999999964 44444332
Q ss_pred ccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecc--cCceeEEEEcC
Q 021036 175 AHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAH--DQVVTGLAWAF 252 (318)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~ 252 (318)
.. .+...+..++++ ++++++++...++.|++|+ .... .+..+..+ ...+..+++++
T Consensus 159 ~~------------~~~~~p~~i~~~-----~~g~l~v~~~~~~~i~~~~--~~g~---~~~~~~~~g~~~~p~~i~~d~ 216 (286)
T 1q7f_A 159 CS------------KHLEFPNGVVVN-----DKQEIFISDNRAHCVKVFN--YEGQ---YLRQIGGEGITNYPIGVGINS 216 (286)
T ss_dssp CT------------TTCSSEEEEEEC-----SSSEEEEEEGGGTEEEEEE--TTCC---EEEEESCTTTSCSEEEEEECT
T ss_pred CC------------CccCCcEEEEEC-----CCCCEEEEECCCCEEEEEc--CCCC---EEEEEccCCccCCCcEEEECC
Confidence 11 112257889999 8999888888899999994 4332 33344332 35788999999
Q ss_pred CCCEEEEecCCC-cEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 253 DGCCLYSCSQDN-FVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 253 ~~~~l~s~~~d~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
+|.++++...++ .|.+||........+...... ..+.+++++|+|+++++.
T Consensus 217 ~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~-------------~~~~~i~~~~~g~l~vs~ 268 (286)
T 1q7f_A 217 NGEILIADNHNNFNLTIFTQDGQLISALESKVKH-------------AQCFDVALMDDGSVVLAS 268 (286)
T ss_dssp TCCEEEEECSSSCEEEEECTTSCEEEEEEESSCC-------------SCEEEEEEETTTEEEEEE
T ss_pred CCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCC-------------CcceeEEECCCCcEEEEC
Confidence 999888887776 999999765555444433221 146799999999887763
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-13 Score=118.89 Aligned_cols=180 Identities=13% Similarity=-0.031 Sum_probs=119.8
Q ss_pred cCCCCCccEEEEecC-CCc--EEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEe
Q 021036 78 NGSSNWFSILAVGGR-SGK--VSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS 154 (318)
Q Consensus 78 ~~~s~~~~~l~~g~~-dg~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~ 154 (318)
..++|+|++|+.++. +|. |.+||+.+++ ..+...++...+..+.| +++|+.|+.++
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~--------------~~~lt~~~~~~~~~~~~-------spdg~~l~~~~ 99 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQV--------------ATQLTEGRGDNTFGGFL-------SPDDDALFYVK 99 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCE--------------EEECCCSSCBCSSSCEE-------CTTSSEEEEEE
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCc--------------eEEeeeCCCCCccceEE-------cCCCCEEEEEe
Confidence 344444588888776 674 7778887754 33444555555556789 99999999999
Q ss_pred CCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEE--EeeccCCCCceEEEEE------------------
Q 021036 155 SDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLS--LILPVQSPRLMLLAVG------------------ 214 (318)
Q Consensus 155 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~--~~~~~~~~~~~~l~~~------------------ 214 (318)
.++.|++||+.+++.......+. ..+.... ++ +++.+++..
T Consensus 100 ~~~~l~~~d~~~g~~~~~~~~~~--------------~~~~~~~~~~~-----~dg~~l~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T 3pe7_A 100 DGRNLMRVDLATLEENVVYQVPA--------------EWVGYGTWVAN-----SDCTKLVGIEIRREDWVPLTDWKKFHE 160 (388)
T ss_dssp TTTEEEEEETTTCCEEEEEECCT--------------TEEEEEEEEEC-----TTSSEEEEEEEEGGGCCCCCSHHHHHH
T ss_pred CCCeEEEEECCCCcceeeeechh--------------hcccccceeEC-----CCCCeeccccccCcccccccccchhhh
Confidence 99999999999887655443222 1222222 35 788887642
Q ss_pred ----eCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcC-CCCEEEEecCC------CcEEEEEecCCceeeeecCC
Q 021036 215 ----KGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAF-DGCCLYSCSQD------NFVRSWIFHGNSLSQVSIPT 283 (318)
Q Consensus 215 ----~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d------~~v~iwd~~~~~~~~~~~~~ 283 (318)
..+..|++| ++.+++.. .+..+...+..++|+| +|+.|+..+.+ ..|.++|+.++....+....
T Consensus 161 ~~~~~~~~~l~~~--d~~~g~~~---~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~ 235 (388)
T 3pe7_A 161 FYFTKPCCRLMRV--DLKTGEST---VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHA 235 (388)
T ss_dssp HGGGCCCEEEEEE--ETTTCCEE---EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCC
T ss_pred hhccCCcceEEEE--ECCCCceE---EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCC
Confidence 233556666 66666532 3445667789999999 99988776653 37788887766555443222
Q ss_pred CCCCccccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 284 NTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 284 ~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
. ...+..++|+|||+.|+.
T Consensus 236 ~-------------~~~~~~~~~spdg~~l~~ 254 (388)
T 3pe7_A 236 E-------------GESCTHEFWVPDGSALVY 254 (388)
T ss_dssp T-------------TEEEEEEEECTTSSCEEE
T ss_pred C-------------CcccccceECCCCCEEEE
Confidence 1 125778999999997765
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.59 E-value=4.6e-13 Score=114.11 Aligned_cols=227 Identities=11% Similarity=0.028 Sum_probs=143.4
Q ss_pred CcCCCCCccceEEee------CCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCC
Q 021036 10 NKMKDSNTHPTVAAS------KSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNW 83 (318)
Q Consensus 10 ~~~~~~~~~~~~t~s------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~ 83 (318)
.++.+.+.+.++... .|+++.+||..+++.+..+.... . . .++++|++
T Consensus 8 ~~~~~~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~----~----p-~i~~spdg----------------- 61 (361)
T 2oiz_A 8 HSVSAPQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAF----N----G-HVQVSNDG----------------- 61 (361)
T ss_dssp CCCSSCGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCE----E----E-EEEECTTS-----------------
T ss_pred cCcCCCCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCC----C----C-ceEECCCC-----------------
Confidence 344444455555433 47899999998887654443211 0 1 26777776
Q ss_pred ccEEEEec----------CCCcEEEEEccCCccccccccccCCceeEEeeecc------ccccEEEEEeeeecCCCCCCC
Q 021036 84 FSILAVGG----------RSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQA------HNSWITSISLAVLSSDSSNPQ 147 (318)
Q Consensus 84 ~~~l~~g~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~------h~~~v~~~~~~p~~~~~~~~~ 147 (318)
++++++. .++.|.+||..+.+ .+..+.. +......+++ +++|
T Consensus 62 -~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~--------------~~~~i~~~~~~~~~g~~p~~i~~-------spdg 119 (361)
T 2oiz_A 62 -KKIYTMTTYHERITRGKRSDVVEVWDADKLT--------------FEKEISLPPKRVQGLNYDGLFRQ-------TTDG 119 (361)
T ss_dssp -SEEEEEEEEETTSSSSCEEEEEEEEETTTCC--------------EEEEEEECTTBCCBCCCGGGEEE-------CTTS
T ss_pred -CEEEEEEecccccccCCCCCEEEEEECcCCc--------------EEEEEEcCccccccCCCcceEEE-------CCCC
Confidence 8888875 36789999998754 3333322 1234567888 8999
Q ss_pred cEEEEEeC--CCcEEEEECCCcceeee-eccccc------c-----------------ccc--ceeee------------
Q 021036 148 VLLVTGSS--DGSVRIWDGYIQELQKS-AEAHCV------P-----------------FSL--LKEVV------------ 187 (318)
Q Consensus 148 ~~l~s~~~--d~~v~iwd~~~~~~~~~-~~~~~~------~-----------------~~~--~~~~~------------ 187 (318)
++|+++.. +++|.+||+.+++.+.. +..... + +.. .....
T Consensus 120 ~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~ 199 (361)
T 2oiz_A 120 KFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVK 199 (361)
T ss_dssp SEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTT
T ss_pred CEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCC
Confidence 99988864 57899999988776655 322110 0 000 00000
Q ss_pred -----------------eecc---------------------------------cceeEEEEeeccCCCCceEEEEEeC-
Q 021036 188 -----------------TVNT---------------------------------VPISVLSLILPVQSPRLMLLAVGKG- 216 (318)
Q Consensus 188 -----------------~~~~---------------------------------~~v~~l~~~~~~~~~~~~~l~~~~~- 216 (318)
.... .....++++ |+++.++++..
T Consensus 200 ~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~-----~dg~~lyv~~~~ 274 (361)
T 2oiz_A 200 DDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLH-----RASGRMYVFMHP 274 (361)
T ss_dssp TSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEE-----TTTTEEEEEEES
T ss_pred CCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEe-----cCCCeEEEEEcc
Confidence 0000 001115666 77666666543
Q ss_pred ----------CCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCC--ceeeee-cCC
Q 021036 217 ----------SGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGN--SLSQVS-IPT 283 (318)
Q Consensus 217 ----------dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~--~~~~~~-~~~ 283 (318)
.+.|.+| |..+.+ .+.++..+. +.+++|+|+|++|++++. ++|.+||+.++ +..... ...
T Consensus 275 ~~~~~~~~~~~~~v~vi--D~~t~~--~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G 347 (361)
T 2oiz_A 275 DGKEGTHKFPAAEIWVM--DTKTKQ--RVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAA 347 (361)
T ss_dssp SCCTTCTTCCCSEEEEE--ETTTTE--EEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSC
T ss_pred CCCcccccCCCceEEEE--ECCCCc--EEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCC
Confidence 3467777 677776 677777666 899999999999988887 99999999998 554332 222
Q ss_pred CCCCccccccCCCcceeeeEEEEcCCCc
Q 021036 284 NTPGLQSCTDLPDAFVSCLGMAVSPGNL 311 (318)
Q Consensus 284 ~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 311 (318)
.....++++|+|.
T Consensus 348 ---------------~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 348 ---------------EASLQVQFHPVGG 360 (361)
T ss_dssp ---------------SSEEEEEECCCSC
T ss_pred ---------------CCcEEEEecCCCC
Confidence 2558899999985
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.58 E-value=6.3e-14 Score=130.69 Aligned_cols=140 Identities=12% Similarity=0.081 Sum_probs=96.6
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccc-----cEEEEEeeeecCCCCCCCcEEEEEeCC---
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNS-----WITSISLAVLSSDSSNPQVLLVTGSSD--- 156 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~p~~~~~~~~~~~l~s~~~d--- 156 (318)
++++++ ||.|++||+.++++ ...+.+|.. ....+.| +|+|++|+.++.+
T Consensus 29 ~~~~~~--~~~i~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~-------Spdg~~l~~~~~~~~~ 85 (740)
T 4a5s_A 29 EYLYKQ--ENNILVFNAEYGNS--------------SVFLENSTFDEFGHSINDYSI-------SPDGQFILLEYNYVKQ 85 (740)
T ss_dssp EEEEEE--TTEEEEEETTTCCE--------------EEEECTTTTTTCCSCCCEEEE-------CTTSSEEEEEEEEEEC
T ss_pred cEEEEc--CCcEEEEECCCCce--------------EEEEechhhhhhcccccceEE-------CCCCCEEEEEECCeee
Confidence 888886 89999999998653 234555542 2345789 9999999999876
Q ss_pred ------CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCC
Q 021036 157 ------GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCN 230 (318)
Q Consensus 157 ------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~ 230 (318)
+.+.+||+.+++... +.. +...+...+|+ |||+.||.+. ++.|++| +..++
T Consensus 86 ~r~~~~~~~~~~d~~~~~~~~-l~~--------------~~~~~~~~~~S-----PdG~~la~~~-~~~i~~~--~~~~~ 142 (740)
T 4a5s_A 86 WRHSYTASYDIYDLNKRQLIT-EER--------------IPNNTQWVTWS-----PVGHKLAYVW-NNDIYVK--IEPNL 142 (740)
T ss_dssp SSSCEEEEEEEEETTTTEECC-SSC--------------CCTTEEEEEEC-----SSTTCEEEEE-TTEEEEE--SSTTS
T ss_pred EEEccceEEEEEECCCCcEEE-ccc--------------CCCcceeeEEC-----CCCCEEEEEE-CCeEEEE--ECCCC
Confidence 566799999887543 222 22367889999 9999999885 7899999 55555
Q ss_pred eeeEeeeeecccCce-----------------eEEEEcCCCCEEEEecCCCc-EEEEEe
Q 021036 231 KFDKVGSYNAHDQVV-----------------TGLAWAFDGCCLYSCSQDNF-VRSWIF 271 (318)
Q Consensus 231 ~~~~~~~~~~h~~~v-----------------~~~~~~~~~~~l~s~~~d~~-v~iwd~ 271 (318)
....+ +..++...+ ..+.|||||++||.++.|.+ +.+|++
T Consensus 143 ~~~~l-t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~ 200 (740)
T 4a5s_A 143 PSYRI-TWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEY 200 (740)
T ss_dssp CCEEC-CSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred ceEEE-cCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEE
Confidence 42222 122232222 35899999999998765433 555544
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-13 Score=118.74 Aligned_cols=169 Identities=10% Similarity=-0.016 Sum_probs=107.5
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEE-------------------EEeeeecCCCCC
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITS-------------------ISLAVLSSDSSN 145 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-------------------~~~~p~~~~~~~ 145 (318)
+.|+..+.++.|++|++.+++.. .....+...... +.| ++
T Consensus 93 ~~l~~~~~~~~l~~~d~~~~~~~--------------~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~-------sp 151 (396)
T 3c5m_A 93 RAFFYVKNELNLMKVDLETLEEQ--------------VIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDW-------QP 151 (396)
T ss_dssp SEEEEEETTTEEEEEETTTCCEE--------------EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGC-------CC
T ss_pred CEEEEEEcCCcEEEEECCCCCcE--------------EEEecccccCCCCCEEEeccCCcccccccccccc-------CC
Confidence 89988888889999999886521 112212221111 344 56
Q ss_pred CCcEEEEE-----eCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCC-CceEEEEEeCCC-
Q 021036 146 PQVLLVTG-----SSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSP-RLMLLAVGKGSG- 218 (318)
Q Consensus 146 ~~~~l~s~-----~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~-~~~~l~~~~~dg- 218 (318)
+++.++.+ ..+..|.+||+.+++...... +...+..+.|+ | ++..|+..+.++
T Consensus 152 dg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~---------------~~~~~~~~~~s-----p~dg~~l~~~~~~~~ 211 (396)
T 3c5m_A 152 LTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQ---------------DTAWLGHPIYR-----PFDDSTVGFCHEGPH 211 (396)
T ss_dssp CCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEE---------------ESSCEEEEEEE-----TTEEEEEEEEECSCS
T ss_pred CCcceeeeeeccCCCcceEEEEECCCCcEEeecc---------------CCcccccceEC-----CCCCCEEEEEecCCC
Confidence 67666554 356789999998876543321 22367888999 8 788776665443
Q ss_pred -----cEEEeeeccCCCeeeEeeeeecc--cCceeEEEEcCCCCEEEEecCC-----CcEEEEEecCCceeeeecCCCCC
Q 021036 219 -----SFDLWKCDISCNKFDKVGSYNAH--DQVVTGLAWAFDGCCLYSCSQD-----NFVRSWIFHGNSLSQVSIPTNTP 286 (318)
Q Consensus 219 -----~i~vw~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~s~~~d-----~~v~iwd~~~~~~~~~~~~~~~~ 286 (318)
.|.+| +...+....+ ..+ ...+..+.|+|+|++|+.++.+ +.|++||+.++....+...+
T Consensus 212 ~~~~~~l~~~--d~~~~~~~~l---~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~--- 283 (396)
T 3c5m_A 212 DLVDARMWLV--NEDGSNVRKI---KEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP--- 283 (396)
T ss_dssp SSCSCCCEEE--ETTSCCCEES---SCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC---
T ss_pred CCCCceEEEE--ECCCCceeEe---eccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC---
Confidence 45666 5555442222 222 2357889999999987776544 44999999887665443222
Q ss_pred CccccccCCCcceeeeEEEEcC-CCcEEEEE
Q 021036 287 GLQSCTDLPDAFVSCLGMAVSP-GNLVVAMV 316 (318)
Q Consensus 287 ~~~~~~~~~~h~~~v~~v~~sp-~~~~l~~~ 316 (318)
... ++|+| ||++++.+
T Consensus 284 -------------~~~-~~~s~~dg~~l~~~ 300 (396)
T 3c5m_A 284 -------------PCS-HLMSNFDGSLMVGD 300 (396)
T ss_dssp -------------SEE-EEEECSSSSEEEEE
T ss_pred -------------CCC-CCccCCCCceEEEe
Confidence 112 89999 99988763
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.55 E-value=6.1e-13 Score=122.47 Aligned_cols=152 Identities=9% Similarity=-0.035 Sum_probs=106.0
Q ss_pred cEEEEecCC----------CcEEEEEccC------CccccccccccCCceeEEeeec-cccccEEEEEeeeecCCCCCCC
Q 021036 85 SILAVGGRS----------GKVSLWRICV------PKCYSVEDCKVPTTAVLIGLFQ-AHNSWITSISLAVLSSDSSNPQ 147 (318)
Q Consensus 85 ~~l~~g~~d----------g~i~iw~~~~------~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~~~~~ 147 (318)
+.|+.++.+ ..|++|++.+ ++ .+.+. .+...+..++| +++|
T Consensus 142 ~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---------------~~~l~~~~~~~~~~~~~-------SpDG 199 (662)
T 3azo_A 142 GEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA---------------VRELSDDAHRFVTGPRL-------SPDG 199 (662)
T ss_dssp TEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG---------------SEESSCSCSSEECCCEE-------CTTS
T ss_pred CEEEEEEecccCCCCCCceeEEEEEECCCCccccCCc---------------eeEEEecCCCcccCceE-------CCCC
Confidence 888888776 5799999987 33 12334 45567888999 9999
Q ss_pred cEEEEEeCC--------CcEEEEECC-Ccc--eeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeC
Q 021036 148 VLLVTGSSD--------GSVRIWDGY-IQE--LQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKG 216 (318)
Q Consensus 148 ~~l~s~~~d--------~~v~iwd~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~ 216 (318)
++|+.++.+ ..|++||+. +++ ....+. ..+...+..+.|+ |+|+++++++.
T Consensus 200 ~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~-------------~~~~~~~~~~~~s-----pdg~l~~~~~~ 261 (662)
T 3azo_A 200 RQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL-------------GGPEEAIAQAEWA-----PDGSLIVATDR 261 (662)
T ss_dssp SEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE-------------EETTBCEEEEEEC-----TTSCEEEEECT
T ss_pred CEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC-------------CCCCceEcceEEC-----CCCeEEEEECC
Confidence 999988755 379999998 452 222221 2223478889999 99998888888
Q ss_pred CCcEEEeeeccCCCeeeEeeeeecccCc--------eeEEEEcCCCCEEEEecCCCcEEEE--EecCCceeee
Q 021036 217 SGSFDLWKCDISCNKFDKVGSYNAHDQV--------VTGLAWAFDGCCLYSCSQDNFVRSW--IFHGNSLSQV 279 (318)
Q Consensus 217 dg~i~vw~~~~~~~~~~~~~~~~~h~~~--------v~~~~~~~~~~~l~s~~~d~~v~iw--d~~~~~~~~~ 279 (318)
++..+||.++..+++.+.+. ..+... +..++|+|+++++++++. +.++|| |+.++....+
T Consensus 262 ~~~~~l~~~~~~~~~~~~l~--~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~l 331 (662)
T 3azo_A 262 TGWWNLHRVDPATGAATQLC--RREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGELVDA 331 (662)
T ss_dssp TSSCEEEEECTTTCCEEESS--CCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEEEEC
T ss_pred CCCeEEEEEECCCCceeecc--cccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcEEEe
Confidence 89777776677666533322 222211 467899999999999998 999999 4445555443
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=6.2e-12 Score=103.38 Aligned_cols=191 Identities=10% Similarity=0.097 Sum_probs=131.1
Q ss_pred CCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeec------cccccEEEEEeeeecC
Q 021036 68 LSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQ------AHNSWITSISLAVLSS 141 (318)
Q Consensus 68 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~------~h~~~v~~~~~~p~~~ 141 (318)
..++.....+++++++++++++...++.|.+|+.+. + .+..+. ++...+.++++
T Consensus 25 ~~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-~--------------~~~~~~~~~~~~~~~~~p~~i~~----- 84 (286)
T 1q7f_A 25 MEGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-R--------------FKFQFGECGKRDSQLLYPNRVAV----- 84 (286)
T ss_dssp STTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS-C--------------EEEEECCBSSSTTCBSSEEEEEE-----
T ss_pred CCCccCCCceEEECCCCCEEEEECCCCEEEEECCCC-c--------------EEEEecccCCCcccccCceEEEE-----
Confidence 344555666777777779989888899999999873 2 222222 34456888888
Q ss_pred CCCCCCcEEEEEeC-CCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcE
Q 021036 142 DSSNPQVLLVTGSS-DGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSF 220 (318)
Q Consensus 142 ~~~~~~~~l~s~~~-d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i 220 (318)
..++++++++... ++.|.+|| .+++....+... +...+..++++ ++|+++++...++.|
T Consensus 85 -~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~-------------~~~~~~~i~~~-----~~g~l~v~~~~~~~i 144 (286)
T 1q7f_A 85 -VRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGAT-------------ILQHPRGVTVD-----NKGRIIVVECKVMRV 144 (286)
T ss_dssp -ETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTT-------------TCSCEEEEEEC-----TTSCEEEEETTTTEE
T ss_pred -EcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCc-------------cCCCceEEEEe-----CCCCEEEEECCCCEE
Confidence 2356666666643 88999999 456555544321 12256789998 899988888888999
Q ss_pred EEeeeccCCCeeeEeeeee--cccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcc
Q 021036 221 DLWKCDISCNKFDKVGSYN--AHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAF 298 (318)
Q Consensus 221 ~vw~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 298 (318)
.+| +.... .+..+. .+...+..++++++|+++++...++.|++||........+.... +.
T Consensus 145 ~~~--~~~g~---~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g-------------~~ 206 (286)
T 1q7f_A 145 IIF--DQNGN---VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEG-------------IT 206 (286)
T ss_dssp EEE--CTTSC---EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTT-------------TS
T ss_pred EEE--cCCCC---EEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEEEccCC-------------cc
Confidence 999 44332 233332 34456899999999998888888999999998655444432221 12
Q ss_pred eeeeEEEEcCCCcEEEEE
Q 021036 299 VSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 299 ~~v~~v~~sp~~~~l~~~ 316 (318)
..+.+++++|+|+++++.
T Consensus 207 ~~p~~i~~d~~G~l~v~~ 224 (286)
T 1q7f_A 207 NYPIGVGINSNGEILIAD 224 (286)
T ss_dssp CSEEEEEECTTCCEEEEE
T ss_pred CCCcEEEECCCCCEEEEe
Confidence 356899999999877765
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.53 E-value=9.8e-13 Score=121.09 Aligned_cols=157 Identities=8% Similarity=-0.042 Sum_probs=102.0
Q ss_pred ccccEEEEEeeeecCCCCCCCcEEEEEeCC----------CcEEEEECCC------cceeeeecccccccccceeeeeec
Q 021036 127 HNSWITSISLAVLSSDSSNPQVLLVTGSSD----------GSVRIWDGYI------QELQKSAEAHCVPFSLLKEVVTVN 190 (318)
Q Consensus 127 h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d----------~~v~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 190 (318)
|...+..++| +++|+.|++++.| ..|++||+.+ ++.......+
T Consensus 128 ~~~~~~~~~~-------spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~-------------- 186 (662)
T 3azo_A 128 GGLRWADPVL-------LPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDA-------------- 186 (662)
T ss_dssp TCEEEEEEEE-------ETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSC--------------
T ss_pred CCccccCcEE-------CCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecC--------------
Confidence 6678899999 9999999998877 5899999987 5433222011
Q ss_pred ccceeEEEEeeccCCCCceEEEEEeCCC--------cEEEeeeccC-CCeeeEeeee-ecccCceeEEEEcCCCCEEEEe
Q 021036 191 TVPISVLSLILPVQSPRLMLLAVGKGSG--------SFDLWKCDIS-CNKFDKVGSY-NAHDQVVTGLAWAFDGCCLYSC 260 (318)
Q Consensus 191 ~~~v~~l~~~~~~~~~~~~~l~~~~~dg--------~i~vw~~~~~-~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~ 260 (318)
...+..++|+ |||+.|+.++.++ .|++|+ .. ++.......+ .+|...+..+.|+|||++++++
T Consensus 187 ~~~~~~~~~S-----pDG~~la~~~~~~~~~~~~~~~i~~~d--~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~ 259 (662)
T 3azo_A 187 HRFVTGPRLS-----PDGRQAVWLAWDHPRMPWEGTELKTAR--VTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVAT 259 (662)
T ss_dssp SSEECCCEEC-----TTSSEEEEEEECTTCCTTTCEEEEEEE--ECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEE
T ss_pred CCcccCceEC-----CCCCEEEEEECCCCCCCCCCcEEEEEE--ECCCCcccccEEeCCCCCceEcceEECCCCeEEEEE
Confidence 1256677898 9999998877553 688884 44 3411122223 3456789999999999988888
Q ss_pred cCCC--cEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 261 SQDN--FVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 261 ~~d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
+.++ .|.+||+.++....+....... ....-.-.+..++|+|++++++++.
T Consensus 260 ~~~~~~~l~~~~~~~~~~~~l~~~~~~~------~~p~w~~~~~~~~~~~~~~~~~~~~ 312 (662)
T 3azo_A 260 DRTGWWNLHRVDPATGAATQLCRREEEF------AGPLWTPGMRWFAPLANGLIAVVHG 312 (662)
T ss_dssp CTTSSCEEEEECTTTCCEEESSCCSSBS------SCCCCSTTCCSEEECTTSCEEEEEB
T ss_pred CCCCCeEEEEEECCCCceeecccccccc------cCccccccCceEeEeCCCEEEEEEE
Confidence 8888 5556665566554433221100 0000001146789999999888763
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.52 E-value=3.6e-13 Score=114.45 Aligned_cols=188 Identities=13% Similarity=0.102 Sum_probs=121.6
Q ss_pred ccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEe
Q 021036 75 VPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS 154 (318)
Q Consensus 75 v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~ 154 (318)
+..+++++.+.++++|+.++ +++|+.+..+...... ....+... ...+.. |+.++| ++.+|+++
T Consensus 40 ~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~---~~~~~~~~-~~~lp~-V~~l~f---------d~~~L~v~- 103 (388)
T 1xip_A 40 LQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSD---STPLTFKW-EKEIPD-VIFVCF---------HGDQVLVS- 103 (388)
T ss_dssp CBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSS---SCCCCCSE-EEECTT-EEEEEE---------ETTEEEEE-
T ss_pred ccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccc---cccccceE-EeeCCC-eeEEEE---------CCCEEEEE-
Confidence 44444444458999999885 6669986532100000 00011111 223556 999998 56788888
Q ss_pred CCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeE
Q 021036 155 SDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDK 234 (318)
Q Consensus 155 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 234 (318)
.++.|++||+++.........+ ..++..+.+. +. .+++++.||.+.+| ++..+....
T Consensus 104 ~~~~l~v~dv~sl~~~~~~~~~--------------~~~v~~i~~~-----~p--~~av~~~dG~L~v~--dl~~~~~~~ 160 (388)
T 1xip_A 104 TRNALYSLDLEELSEFRTVTSF--------------EKPVFQLKNV-----NN--TLVILNSVNDLSAL--DLRTKSTKQ 160 (388)
T ss_dssp ESSEEEEEESSSTTCEEEEEEC--------------SSCEEEEEEC-----SS--EEEEEETTSEEEEE--ETTTCCEEE
T ss_pred cCCcEEEEEchhhhccCcccee--------------ecceeeEEec-----CC--CEEEEECCCCEEEE--EccCCcccc
Confidence 8899999999876544433322 2356666665 22 28888999999999 455544211
Q ss_pred eeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCce--e-eeecCCCCCCccccccCCCcceeeeEEEEcCCCc
Q 021036 235 VGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSL--S-QVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNL 311 (318)
Q Consensus 235 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~--~-~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 311 (318)
+...|++++|+|+| ++.|..||++++|+..+... . .+...+. ..+..+|...|.+|.|.++++
T Consensus 161 ------~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~------~~~~~~~~~~V~sI~wl~~~~ 226 (388)
T 1xip_A 161 ------LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSE------LEELPVEEYSPLSVTILSPQD 226 (388)
T ss_dssp ------EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHH------HHTSCTTTSEEEEEEESSSSE
T ss_pred ------ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcc------cccccCCCeeEEEEEEecCCe
Confidence 44589999999999 67899999999999888774 2 3321110 011123557999999999999
Q ss_pred EEEE
Q 021036 312 VVAM 315 (318)
Q Consensus 312 ~l~~ 315 (318)
++++
T Consensus 227 flv~ 230 (388)
T 1xip_A 227 FLAV 230 (388)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9886
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.51 E-value=2e-11 Score=102.61 Aligned_cols=223 Identities=9% Similarity=-0.045 Sum_probs=131.0
Q ss_pred ceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCC----C
Q 021036 19 PTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRS----G 94 (318)
Q Consensus 19 ~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~d----g 94 (318)
..+++..++.|.+||..+++....... ... .+..++|+|++ +++++...+ +
T Consensus 58 l~~~~~~~~~i~~~d~~~~~~~~~~~~----~~~---~~~~i~~~~dg------------------~l~v~~~~~~~~~~ 112 (333)
T 2dg1_A 58 LFLLDVFEGNIFKINPETKEIKRPFVS----HKA---NPAAIKIHKDG------------------RLFVCYLGDFKSTG 112 (333)
T ss_dssp EEEEETTTCEEEEECTTTCCEEEEEEC----SSS---SEEEEEECTTS------------------CEEEEECTTSSSCC
T ss_pred EEEEECCCCEEEEEeCCCCcEEEEeeC----CCC---CcceEEECCCC------------------cEEEEeCCCCCCCc
Confidence 334566677777777766553221110 111 12335555555 888877666 6
Q ss_pred cEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeC------CCcEEEEECCCcc
Q 021036 95 KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSS------DGSVRIWDGYIQE 168 (318)
Q Consensus 95 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~------d~~v~iwd~~~~~ 168 (318)
.|.+||.+++.. ..+.....+...+.++.+ .++|+++++... .+.|..+|..+++
T Consensus 113 ~i~~~d~~~~~~------------~~~~~~~~~~~~~~~i~~-------d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~ 173 (333)
T 2dg1_A 113 GIFAATENGDNL------------QDIIEDLSTAYCIDDMVF-------DSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT 173 (333)
T ss_dssp EEEEECTTSCSC------------EEEECSSSSCCCEEEEEE-------CTTSCEEEEECCCBTTBCCEEEEEECTTSCC
T ss_pred eEEEEeCCCCEE------------EEEEccCccCCcccceEE-------CCCCCEEEEeccccccCCCceEEEEeCCCCE
Confidence 899999887542 111111123457899999 888988877654 2456666655443
Q ss_pred eeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEE-EEEeCCCcEEEeeeccCCCeeeEe-----eeeeccc
Q 021036 169 LQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLL-AVGKGSGSFDLWKCDISCNKFDKV-----GSYNAHD 242 (318)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l-~~~~~dg~i~vw~~~~~~~~~~~~-----~~~~~h~ 242 (318)
...... ....+..++|+ |+++.+ ++.+.++.|.+|+.+......... ..+.++
T Consensus 174 ~~~~~~---------------~~~~~~~i~~~-----~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~- 232 (333)
T 2dg1_A 174 VTPIIQ---------------NISVANGIALS-----TDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH- 232 (333)
T ss_dssp EEEEEE---------------EESSEEEEEEC-----TTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-
T ss_pred EEEeec---------------CCCcccceEEC-----CCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-
Confidence 322111 11246788998 898755 455567899999654222221111 111222
Q ss_pred CceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 243 QVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 243 ~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
..+..++++++|.++++...++.|.+||..+.....+..... ..+|...+.+++|+||++.|..
T Consensus 233 ~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~---------~~g~~~~~~~~~~~~dg~~L~v 296 (333)
T 2dg1_A 233 EGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQILIPGR---------DEGHMLRSTHPQFIPGTNQLII 296 (333)
T ss_dssp SEEEEEEEBTTCCEEEEEETTTEEEEECTTSCEEEEEECTTG---------GGTCSCBCCEEEECTTSCEEEE
T ss_pred CCCCceEECCCCCEEEEEcCCCEEEEECCCCCEEEEEEcCCC---------ccccccCcceEEECCCCCEEEE
Confidence 367889999999988887778999999985444443332211 0112235689999999865543
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-12 Score=112.47 Aligned_cols=237 Identities=9% Similarity=-0.008 Sum_probs=138.3
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCC---C----cccccccCCCCCccEEE
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSS---K----KYPVPQNGSSNWFSILA 88 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~---~----~~~v~~~~~s~~~~~l~ 88 (318)
+...++.++.++.+.+||+.+++......... .|.|++.... . ......+.++|+++.++
T Consensus 91 dg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~-------------~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~ 157 (396)
T 3c5m_A 91 DERAFFYVKNELNLMKVDLETLEEQVIYTVDE-------------EWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEK 157 (396)
T ss_dssp TSSEEEEEETTTEEEEEETTTCCEEEEEECCT-------------TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHH
T ss_pred CCCEEEEEEcCCcEEEEECCCCCcEEEEeccc-------------ccCCCCCEEEeccCCccccccccccccCCCCccee
Confidence 44557788888899999998876533332111 0222210000 0 00011245566667766
Q ss_pred Ee-----cCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCC-CCcEEEEEeCC------
Q 021036 89 VG-----GRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSN-PQVLLVTGSSD------ 156 (318)
Q Consensus 89 ~g-----~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~-~~~~l~s~~~d------ 156 (318)
.. ..+..|.+||+.+++. ..+..+...+..+.| ++ +++.|+..+.+
T Consensus 158 ~~~~~~~~~~~~l~~~d~~~g~~---------------~~~~~~~~~~~~~~~-------sp~dg~~l~~~~~~~~~~~~ 215 (396)
T 3c5m_A 158 FAEFYHTNPTCRLIKVDIETGEL---------------EVIHQDTAWLGHPIY-------RPFDDSTVGFCHEGPHDLVD 215 (396)
T ss_dssp HHHHHHTCCCEEEEEEETTTCCE---------------EEEEEESSCEEEEEE-------ETTEEEEEEEEECSCSSSCS
T ss_pred eeeeccCCCcceEEEEECCCCcE---------------EeeccCCcccccceE-------CCCCCCEEEEEecCCCCCCC
Confidence 54 4567899999987542 122245677899999 77 77777766543
Q ss_pred CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCC-----CcEEEeeeccCCCe
Q 021036 157 GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGS-----GSFDLWKCDISCNK 231 (318)
Q Consensus 157 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~d-----g~i~vw~~~~~~~~ 231 (318)
..|.+||+..++...... +. ....+..+.|+ |+|+.|+.++.+ +.|++| +..+++
T Consensus 216 ~~l~~~d~~~~~~~~l~~-~~------------~~~~~~~~~~s-----pdg~~l~~~~~~~~~~~~~l~~~--d~~~g~ 275 (396)
T 3c5m_A 216 ARMWLVNEDGSNVRKIKE-HA------------EGESCTHEFWI-----PDGSAMAYVSYFKGQTDRVIYKA--NPETLE 275 (396)
T ss_dssp CCCEEEETTSCCCEESSC-CC------------TTEEEEEEEEC-----TTSSCEEEEEEETTTCCEEEEEE--CTTTCC
T ss_pred ceEEEEECCCCceeEeec-cC------------CCccccceEEC-----CCCCEEEEEecCCCCccceEEEE--ECCCCC
Confidence 368888887654322221 10 01246778998 999977766543 348888 566665
Q ss_pred eeEeeeeecccCceeEEEEcC-CCCEEEEec----------------CCCcEEEEEecCCceeeeecCCCCCCccccccC
Q 021036 232 FDKVGSYNAHDQVVTGLAWAF-DGCCLYSCS----------------QDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDL 294 (318)
Q Consensus 232 ~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~----------------~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 294 (318)
...+..+.+ .. +.|+| +|+++++++ .+..|++||+.++....+..+....... .
T Consensus 276 ~~~l~~~~~----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~----~ 346 (396)
T 3c5m_A 276 NEEVMVMPP----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVL----D 346 (396)
T ss_dssp EEEEEECCS----EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCB----T
T ss_pred eEEeeeCCC----CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccc----c
Confidence 434433322 23 88999 999887754 3478999999887765554333200000 0
Q ss_pred CCcceeeeEEEEcCCCcEEEEE
Q 021036 295 PDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 295 ~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
......+..++|+|||+.|+.+
T Consensus 347 ~~~~~~~~~~~~s~dg~~l~~~ 368 (396)
T 3c5m_A 347 GDRQITHPHPSFTPNDDGVLFT 368 (396)
T ss_dssp TBSSTTCCCCEECTTSSEEEEE
T ss_pred ccccCCCCCceEccCCCeEEEE
Confidence 0000014567899999888765
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.8e-11 Score=100.06 Aligned_cols=213 Identities=12% Similarity=0.055 Sum_probs=130.6
Q ss_pred ceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEE
Q 021036 19 PTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSL 98 (318)
Q Consensus 19 ~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i 98 (318)
.++++..++.+.+||..++ ...+.. ... .+..++++|++ +++++...++.|.+
T Consensus 42 l~~~~~~~~~i~~~~~~~~--~~~~~~----~~~---~~~~l~~~~dg------------------~l~v~~~~~~~i~~ 94 (296)
T 3e5z_A 42 VIFSDVRQNRTWAWSDDGQ--LSPEMH----PSH---HQNGHCLNKQG------------------HLIACSHGLRRLER 94 (296)
T ss_dssp EEEEEGGGTEEEEEETTSC--EEEEES----SCS---SEEEEEECTTC------------------CEEEEETTTTEEEE
T ss_pred EEEEeCCCCEEEEEECCCC--eEEEEC----CCC---CcceeeECCCC------------------cEEEEecCCCeEEE
Confidence 4566677778888887665 222211 111 12235565555 88888777889999
Q ss_pred EEccCCccccccccccCCceeEEeeecc-ccccEEEEEeeeecCCCCCCCcEEEEEeC-----------------CCcEE
Q 021036 99 WRICVPKCYSVEDCKVPTTAVLIGLFQA-HNSWITSISLAVLSSDSSNPQVLLVTGSS-----------------DGSVR 160 (318)
Q Consensus 99 w~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~~~~~~~~~~l~s~~~-----------------d~~v~ 160 (318)
|+..+++.. ........ ....++.+++ .++|+++++.+. .+.|.
T Consensus 95 ~d~~~g~~~-----------~~~~~~~~~~~~~~~~i~~-------d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~ 156 (296)
T 3e5z_A 95 QREPGGEWE-----------SIADSFEGKKLNSPNDVCL-------APDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVF 156 (296)
T ss_dssp ECSTTCCEE-----------EEECEETTEECCCCCCEEE-------CTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEE
T ss_pred EcCCCCcEE-----------EEeeccCCCCCCCCCCEEE-------CCCCCEEEECCccccccccccccccccCCCcEEE
Confidence 999776521 11111111 1235678999 889998887321 23555
Q ss_pred EEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCee-eEeeeee
Q 021036 161 IWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKF-DKVGSYN 239 (318)
Q Consensus 161 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~-~~~~~~~ 239 (318)
.++.. ++.. .+.. +......++|+ |+++.+++.+.++.|++|+++. .++. .....+.
T Consensus 157 ~~~~~-g~~~-~~~~--------------~~~~~~gi~~s-----~dg~~lv~~~~~~~i~~~~~~~-~g~~~~~~~~~~ 214 (296)
T 3e5z_A 157 RLAPD-GTLS-APIR--------------DRVKPNGLAFL-----PSGNLLVSDTGDNATHRYCLNA-RGETEYQGVHFT 214 (296)
T ss_dssp EECTT-SCEE-EEEC--------------CCSSEEEEEEC-----TTSCEEEEETTTTEEEEEEECS-SSCEEEEEEEEC
T ss_pred EECCC-CCEE-Eeec--------------CCCCCccEEEC-----CCCCEEEEeCCCCeEEEEEECC-CCcCcCCCeEee
Confidence 55544 3322 2111 12245789999 9999887777889999996642 3332 1122233
Q ss_pred cccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEE-cCCCcEEEEE
Q 021036 240 AHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAV-SPGNLVVAMV 316 (318)
Q Consensus 240 ~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~-sp~~~~l~~~ 316 (318)
.+...+.+++++++|+++++. ++.|.+||..+.....+.... . +.+++| +|+++.|.++
T Consensus 215 ~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~g~~~~~~~~~~---------------~-~~~~~f~~~d~~~L~v~ 274 (296)
T 3e5z_A 215 VEPGKTDGLRVDAGGLIWASA--GDGVHVLTPDGDELGRVLTPQ---------------T-TSNLCFGGPEGRTLYMT 274 (296)
T ss_dssp CSSSCCCSEEEBTTSCEEEEE--TTEEEEECTTSCEEEEEECSS---------------C-CCEEEEESTTSCEEEEE
T ss_pred CCCCCCCeEEECCCCCEEEEc--CCeEEEECCCCCEEEEEECCC---------------C-ceeEEEECCCCCEEEEE
Confidence 345567889999999866666 789999998754444433222 2 588999 5888766654
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-11 Score=102.04 Aligned_cols=183 Identities=13% Similarity=0.040 Sum_probs=123.8
Q ss_pred eeeecccccCCCCcccccccCCCCCcc-EEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEee
Q 021036 59 AVAWSPVLRLSSKKYPVPQNGSSNWFS-ILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLA 137 (318)
Q Consensus 59 ~~~w~p~~~~~~~~~~v~~~~~s~~~~-~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 137 (318)
.++|+|++ + +++++..++.|..|+..++ ...+..+...+.++++
T Consensus 32 g~~~d~~g------------------~~l~~~~~~~~~i~~~~~~~~----------------~~~~~~~~~~~~~l~~- 76 (296)
T 3e5z_A 32 GPVYVPAR------------------SAVIFSDVRQNRTWAWSDDGQ----------------LSPEMHPSHHQNGHCL- 76 (296)
T ss_dssp EEEEEGGG------------------TEEEEEEGGGTEEEEEETTSC----------------EEEEESSCSSEEEEEE-
T ss_pred CCeEeCCC------------------CEEEEEeCCCCEEEEEECCCC----------------eEEEECCCCCcceeeE-
Confidence 47888887 6 8888999999999999863 3445556778999999
Q ss_pred eecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCC
Q 021036 138 VLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGS 217 (318)
Q Consensus 138 p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~d 217 (318)
+++|+++++...++.|.+||..+++.......... .....++.++++ |+|+++++.+..
T Consensus 77 ------~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~----------~~~~~~~~i~~d-----~~G~l~vtd~~~ 135 (296)
T 3e5z_A 77 ------NKQGHLIACSHGLRRLERQREPGGEWESIADSFEG----------KKLNSPNDVCLA-----PDGSLWFSDPTY 135 (296)
T ss_dssp ------CTTCCEEEEETTTTEEEEECSTTCCEEEEECEETT----------EECCCCCCEEEC-----TTSCEEEEECSH
T ss_pred ------CCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCC----------CCCCCCCCEEEC-----CCCCEEEECCcc
Confidence 88999888777789999999977765433221110 112246778998 899988873211
Q ss_pred ---------------CcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEec-CCce---ee
Q 021036 218 ---------------GSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFH-GNSL---SQ 278 (318)
Q Consensus 218 ---------------g~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~-~~~~---~~ 278 (318)
+.-.||.++.. ++. ..+..+......++|+|+|+.+++.+.++.|.+|++. .+.+ ..
T Consensus 136 g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~---~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~ 211 (296)
T 3e5z_A 136 GIDKPEEGYGGEMELPGRWVFRLAPD-GTL---SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGV 211 (296)
T ss_dssp HHHCGGGSSCCCCCSSSCEEEEECTT-SCE---EEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEE
T ss_pred ccccccccccccccCCCcEEEEECCC-CCE---EEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCe
Confidence 11244444554 332 2334455667899999999988888888999999997 4444 11
Q ss_pred eecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 279 VSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
.. .. +...+.+++++++|++.++
T Consensus 212 ~~-~~-------------~~~~p~~i~~d~~G~l~v~ 234 (296)
T 3e5z_A 212 HF-TV-------------EPGKTDGLRVDAGGLIWAS 234 (296)
T ss_dssp EE-CC-------------SSSCCCSEEEBTTSCEEEE
T ss_pred Ee-eC-------------CCCCCCeEEECCCCCEEEE
Confidence 11 11 1124467888888876554
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.5e-11 Score=98.46 Aligned_cols=193 Identities=11% Similarity=-0.018 Sum_probs=134.9
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCc
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGK 95 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~ 95 (318)
+.+.+++++.|+.+.+||.++++.+-.+..... .. ...+...|++ ++|++ .++.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~---~~---~~~~~~~pdG------------------~ilvs--~~~~ 57 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKG---WE---CNSVAATKAG------------------EILFS--YSKG 57 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTT---CC---CCEEEECTTS------------------CEEEE--CBSE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCcc---CC---CcCeEECCCC------------------CEEEe--CCCC
Confidence 456789999999999999989987655543210 01 1224455555 88883 4678
Q ss_pred EEEEEccCCccccccccccCCceeEEeeeccc-cccEEEEEeeeecCCCCCCCcEEEEEeC-CCcEEEEECCCcceeeee
Q 021036 96 VSLWRICVPKCYSVEDCKVPTTAVLIGLFQAH-NSWITSISLAVLSSDSSNPQVLLVTGSS-DGSVRIWDGYIQELQKSA 173 (318)
Q Consensus 96 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~p~~~~~~~~~~~l~s~~~-d~~v~iwd~~~~~~~~~~ 173 (318)
|..||. +++ .+..+..+ ...+.++.+ .++|+++++.+. ++.|..+|. .++.+..+
T Consensus 58 V~~~d~-~G~--------------~~W~~~~~~~~~~~~~~~-------~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~ 114 (276)
T 3no2_A 58 AKMITR-DGR--------------ELWNIAAPAGCEMQTARI-------LPDGNALVAWCGHPSTILEVNM-KGEVLSKT 114 (276)
T ss_dssp EEEECT-TSC--------------EEEEEECCTTCEEEEEEE-------CTTSCEEEEEESTTEEEEEECT-TSCEEEEE
T ss_pred EEEECC-CCC--------------EEEEEcCCCCccccccEE-------CCCCCEEEEecCCCCEEEEEeC-CCCEEEEE
Confidence 999998 543 45555543 346888888 899999999887 778888876 67766665
Q ss_pred cccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCC
Q 021036 174 EAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFD 253 (318)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 253 (318)
...... ..+......+++. ++|+++++...++.|..| |.. ++ .+.++... ..+.++...++
T Consensus 115 ~~~~~~--------~~~~~~~~~v~~~-----~~G~~lv~~~~~~~v~~~--d~~-G~--~~w~~~~~-~~~~~~~~~~~ 175 (276)
T 3no2_A 115 EFETGI--------ERPHAQFRQINKN-----KKGNYLVPLFATSEVREI--APN-GQ--LLNSVKLS-GTPFSSAFLDN 175 (276)
T ss_dssp EECCSC--------SSGGGSCSCCEEC-----TTSCEEEEETTTTEEEEE--CTT-SC--EEEEEECS-SCCCEEEECTT
T ss_pred eccCCC--------CcccccccCceEC-----CCCCEEEEecCCCEEEEE--CCC-CC--EEEEEECC-CCccceeEcCC
Confidence 432110 0011133445666 899999999999999999 555 55 55566543 45667888999
Q ss_pred CCEEEEecCCCcEEEEEecCCce
Q 021036 254 GCCLYSCSQDNFVRSWIFHGNSL 276 (318)
Q Consensus 254 ~~~l~s~~~d~~v~iwd~~~~~~ 276 (318)
|..++++..++.|..+|..+++.
T Consensus 176 g~~~v~~~~~~~v~~~d~~tG~~ 198 (276)
T 3no2_A 176 GDCLVACGDAHCFVQLNLESNRI 198 (276)
T ss_dssp SCEEEECBTTSEEEEECTTTCCE
T ss_pred CCEEEEeCCCCeEEEEeCcCCcE
Confidence 99999998888999999986554
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=4.9e-11 Score=100.24 Aligned_cols=189 Identities=8% Similarity=-0.055 Sum_probs=124.7
Q ss_pred cccccccCCCCCccEEEEecCC------------------------CcEEEEEccCCccccccccccCCceeEEeeec-c
Q 021036 72 KYPVPQNGSSNWFSILAVGGRS------------------------GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQ-A 126 (318)
Q Consensus 72 ~~~v~~~~~s~~~~~l~~g~~d------------------------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 126 (318)
...+.+++++++|+++++...+ +.|.+||..+++ .+..+. +
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~--------------~~~~~~~~ 88 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAE--------------ILQSSGKN 88 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCC--------------EEEEECTT
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCe--------------EEeccCCC
Confidence 3456667777777999888777 479999988754 233332 4
Q ss_pred ccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcc-eeeeecccccccccceeeeeecccceeEEEEeeccCC
Q 021036 127 HNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQE-LQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQS 205 (318)
Q Consensus 127 h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 205 (318)
+......+++ .++|+++++...++.|++||..... .+..+.....+- ....+......++++
T Consensus 89 ~~~~p~gia~-------d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g-----~~~~~~~~P~~ia~~----- 151 (329)
T 3fvz_A 89 LFYLPHGLSI-------DTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPG-----SDQNHFCQPTDVAVE----- 151 (329)
T ss_dssp TCSSEEEEEE-------CTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCC-----CSTTCCSSEEEEEEC-----
T ss_pred ccCCceEEEE-------CCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCC-----CCccccCCCcEEEEe-----
Confidence 4457899999 8899988888889999999986442 333332110000 000122357889999
Q ss_pred C-CceEEEEEe-CCCcEEEeeeccCCCeeeEeeeeec----------ccCceeEEEEcCC-CCEEEEecCCCcEEEEEec
Q 021036 206 P-RLMLLAVGK-GSGSFDLWKCDISCNKFDKVGSYNA----------HDQVVTGLAWAFD-GCCLYSCSQDNFVRSWIFH 272 (318)
Q Consensus 206 ~-~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~----------h~~~v~~~~~~~~-~~~l~s~~~d~~v~iwd~~ 272 (318)
| ++.++++.+ .++.|++| +. .++ .+..+.. +-.....++++|+ +.++++...++.|++||..
T Consensus 152 ~~~g~lyv~d~~~~~~I~~~--~~-~g~--~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~ 226 (329)
T 3fvz_A 152 PSTGAVFVSDGYCNSRIVQF--SP-SGK--FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD 226 (329)
T ss_dssp TTTCCEEEEECSSCCEEEEE--CT-TSC--EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCCeEEEEeCCCCCeEEEE--cC-CCC--EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC
Confidence 8 788888886 69999999 43 333 2333321 2234789999998 7778888889999999998
Q ss_pred CCceeeeecCCCCCCccccccCCCcceeeeEEEEcC
Q 021036 273 GNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSP 308 (318)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp 308 (318)
+++.......+ .+...+.+++|+|
T Consensus 227 ~G~~~~~~~~~------------~~~~~~~~~~~~p 250 (329)
T 3fvz_A 227 TKEFVREIKHA------------SFGRNVFAISYIP 250 (329)
T ss_dssp TCCEEEEECCT------------TTTTCEEEEEEET
T ss_pred CCcEEEEEecc------------ccCCCcceeeecC
Confidence 65544322111 1223566777777
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=4.3e-11 Score=111.09 Aligned_cols=207 Identities=10% Similarity=-0.001 Sum_probs=129.0
Q ss_pred ceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCc------------
Q 021036 28 GNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGK------------ 95 (318)
Q Consensus 28 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~------------ 95 (318)
+|++||+.+++..+.... ... ...++|+|++ +.|+.++.++.
T Consensus 152 ~i~v~d~~tg~~~~~~~~-----~~~---~~~~~wspDg------------------~~l~~~~~~~~~~~~~~~~~~~~ 205 (710)
T 2xdw_A 152 TIKFMKVDGAKELPDVLE-----RVK---FSCMAWTHDG------------------KGMFYNAYPQQDGKSDGTETSTN 205 (710)
T ss_dssp EEEEEETTTTEEEEEEEE-----EEC---SCCEEECTTS------------------SEEEEEECCCCSSCCSSSCCCCC
T ss_pred EEEEEECCCCCCCccccc-----Ccc---cceEEEEeCC------------------CEEEEEEECCccccccccccccC
Confidence 899999998876442111 111 2238899888 88888777765
Q ss_pred ----EEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeC-----CCcEEEEECCC
Q 021036 96 ----VSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSS-----DGSVRIWDGYI 166 (318)
Q Consensus 96 ----i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~-----d~~v~iwd~~~ 166 (318)
|++|++.+++.. ...+.....|...+..+.| +++|++|+.++. +..|.+||+.+
T Consensus 206 ~~~~v~~~~l~t~~~~----------~~~v~~~~~~~~~~~~~~~-------SpDg~~l~~~~~~~~~~~~~l~~~d~~~ 268 (710)
T 2xdw_A 206 LHQKLYYHVLGTDQSE----------DILCAEFPDEPKWMGGAEL-------SDDGRYVLLSIREGCDPVNRLWYCDLQQ 268 (710)
T ss_dssp CCCEEEEEETTSCGGG----------CEEEECCTTCTTCEEEEEE-------CTTSCEEEEEEECSSSSCCEEEEEEGGG
T ss_pred CCCEEEEEECCCCccc----------ceEEeccCCCCeEEEEEEE-------cCCCCEEEEEEEccCCCccEEEEEECcc
Confidence 999999876421 1122233345666889999 999999888765 56899999976
Q ss_pred ------cc-eeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCC----CcEEEeeeccCCCeeeEe
Q 021036 167 ------QE-LQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGS----GSFDLWKCDISCNKFDKV 235 (318)
Q Consensus 167 ------~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~d----g~i~vw~~~~~~~~~~~~ 235 (318)
+. ....+..+. ..+.. .|+ ++|+.|+..+.. +.|.+| +..+......
T Consensus 269 ~~~~~~~~~~~~~l~~~~--------------~~~~~-~~s-----~dg~~l~~~s~~~~~~~~l~~~--d~~~~~~~~~ 326 (710)
T 2xdw_A 269 ESNGITGILKWVKLIDNF--------------EGEYD-YVT-----NEGTVFTFKTNRHSPNYRLINI--DFTDPEESKW 326 (710)
T ss_dssp SSSSSCSSCCCEEEECSS--------------SSCEE-EEE-----EETTEEEEEECTTCTTCEEEEE--ETTSCCGGGC
T ss_pred cccccCCccceEEeeCCC--------------CcEEE-EEe-----ccCCEEEEEECCCCCCCEEEEE--eCCCCCcccc
Confidence 42 233332222 12322 466 677766665543 347777 5544321112
Q ss_pred eeeecccC--ceeEEEEcCCCCEEEEecCCCc--EEEEEecCCc-eeeeecCCCCCCccccccCCCcceeeeEEEEcCCC
Q 021036 236 GSYNAHDQ--VVTGLAWAFDGCCLYSCSQDNF--VRSWIFHGNS-LSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGN 310 (318)
Q Consensus 236 ~~~~~h~~--~v~~~~~~~~~~~l~s~~~d~~--v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~ 310 (318)
..+..|.. .+..++|++++.++++...|+. |.+|++.++. ...+... .+.+.+++++|++
T Consensus 327 ~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~---------------~~~v~~~~~s~d~ 391 (710)
T 2xdw_A 327 KVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLE---------------VGSVVGYSGQKKD 391 (710)
T ss_dssp EEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCC---------------SSEEEEEECCTTC
T ss_pred eeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCC---------------CceEEEEecCCCC
Confidence 23444443 6788999988888888888885 5556664554 3333332 2367888899988
Q ss_pred cEEE
Q 021036 311 LVVA 314 (318)
Q Consensus 311 ~~l~ 314 (318)
..++
T Consensus 392 ~~l~ 395 (710)
T 2xdw_A 392 TEIF 395 (710)
T ss_dssp SEEE
T ss_pred CEEE
Confidence 6555
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.5e-11 Score=99.88 Aligned_cols=213 Identities=8% Similarity=-0.037 Sum_probs=136.8
Q ss_pred ccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcE
Q 021036 17 THPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKV 96 (318)
Q Consensus 17 ~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i 96 (318)
....++...++.+.+||..+++.+..+... . ....+++++++ +++++...++.|
T Consensus 54 ~~lyv~~~~~~~v~viD~~t~~~~~~i~~~-----~---~p~~i~~~~~g------------------~lyv~~~~~~~v 107 (328)
T 3dsm_A 54 GIGWIVVNNSHVIFAIDINTFKEVGRITGF-----T---SPRYIHFLSDE------------------KAYVTQIWDYRI 107 (328)
T ss_dssp TEEEEEEGGGTEEEEEETTTCCEEEEEECC-----S---SEEEEEEEETT------------------EEEEEEBSCSEE
T ss_pred CEEEEEEcCCCEEEEEECcccEEEEEcCCC-----C---CCcEEEEeCCC------------------eEEEEECCCCeE
Confidence 344566667899999999998876655311 1 12236666665 666665578999
Q ss_pred EEEEccCCccccccccccCCceeEEeeecccc-----ccEEEEEeeeecCCCCCCCcEEEEEe-CCCcEEEEECCCccee
Q 021036 97 SLWRICVPKCYSVEDCKVPTTAVLIGLFQAHN-----SWITSISLAVLSSDSSNPQVLLVTGS-SDGSVRIWDGYIQELQ 170 (318)
Q Consensus 97 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-----~~v~~~~~~p~~~~~~~~~~~l~s~~-~d~~v~iwd~~~~~~~ 170 (318)
.+||.++++ ....+.... .....+++ . +++++++.. .++.|.++|..+++..
T Consensus 108 ~~iD~~t~~--------------~~~~i~~g~~~~~~~~p~~i~~-------~-~~~lyv~~~~~~~~v~viD~~t~~~~ 165 (328)
T 3dsm_A 108 FIINPKTYE--------------ITGYIECPDMDMESGSTEQMVQ-------Y-GKYVYVNCWSYQNRILKIDTETDKVV 165 (328)
T ss_dssp EEEETTTTE--------------EEEEEECTTCCTTTCBCCCEEE-------E-TTEEEEEECTTCCEEEEEETTTTEEE
T ss_pred EEEECCCCe--------------EEEEEEcCCccccCCCcceEEE-------E-CCEEEEEcCCCCCEEEEEECCCCeEE
Confidence 999998854 333333211 13455666 2 344455544 4899999999998877
Q ss_pred eeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCC----------CcEEEeeeccCCCeeeEeeeeec
Q 021036 171 KSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGS----------GSFDLWKCDISCNKFDKVGSYNA 240 (318)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~d----------g~i~vw~~~~~~~~~~~~~~~~~ 240 (318)
..+.... ....+.++ |+|++++++..+ +.|.++ |..+.+ ....+..
T Consensus 166 ~~i~~g~---------------~p~~i~~~-----~dG~l~v~~~~~~~~~~~~~~~~~v~~i--d~~t~~--v~~~~~~ 221 (328)
T 3dsm_A 166 DELTIGI---------------QPTSLVMD-----KYNKMWTITDGGYEGSPYGYEAPSLYRI--DAETFT--VEKQFKF 221 (328)
T ss_dssp EEEECSS---------------CBCCCEEC-----TTSEEEEEBCCBCTTCSSCBCCCEEEEE--ETTTTE--EEEEEEC
T ss_pred EEEEcCC---------------CccceEEc-----CCCCEEEEECCCccCCccccCCceEEEE--ECCCCe--EEEEEec
Confidence 6654322 34567888 899977777654 678888 666665 3333332
Q ss_pred c-cCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcC-CCcEEEE
Q 021036 241 H-DQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSP-GNLVVAM 315 (318)
Q Consensus 241 h-~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~~ 315 (318)
. ......++|+|++++|+++.. .|.+||..+++......-+. ......+++++| ++.+.++
T Consensus 222 ~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~------------~~~~p~gi~vdp~~g~lyva 284 (328)
T 3dsm_A 222 KLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEF------------RDTKYYGLTVNPNNGEVYVA 284 (328)
T ss_dssp CTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCC------------CSSCEEEEEECTTTCCEEEE
T ss_pred CCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecC------------CCCceEEEEEcCCCCeEEEE
Confidence 1 236789999999998877655 89999998776542221111 013568899998 4555444
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1e-10 Score=95.08 Aligned_cols=179 Identities=8% Similarity=-0.037 Sum_probs=118.0
Q ss_pred cCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeec-cccccEEEEEeeeecCCCCCCCcEEEEEeCC
Q 021036 78 NGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQ-AHNSWITSISLAVLSSDSSNPQVLLVTGSSD 156 (318)
Q Consensus 78 ~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d 156 (318)
++++++++++++.. ++.|.+|+...... ..+. .....+.++++ .++|+++++...+
T Consensus 72 i~~~~~g~l~v~~~-~~~i~~~d~~~~~~---------------~~~~~~~~~~p~~i~~-------~~~g~l~v~~~~~ 128 (270)
T 1rwi_B 72 LAVDGAGTVYVTDF-NNRVVTLAAGSNNQ---------------TVLPFDGLNYPEGLAV-------DTQGAVYVADRGN 128 (270)
T ss_dssp EEECTTCCEEEEET-TTEEEEECTTCSCC---------------EECCCCSCSSEEEEEE-------CTTCCEEEEEGGG
T ss_pred eEECCCCCEEEEcC-CCEEEEEeCCCceE---------------eeeecCCcCCCcceEE-------CCCCCEEEEECCC
Confidence 33344448766666 88999999875331 1121 22356889999 7888888887778
Q ss_pred CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEee
Q 021036 157 GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVG 236 (318)
Q Consensus 157 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 236 (318)
+.|.+|+..+......... ....+..++++ ++|+++++...++.|.+| +...... ..
T Consensus 129 ~~i~~~~~~~~~~~~~~~~--------------~~~~p~~i~~~-----~~g~l~v~~~~~~~i~~~--~~~~~~~--~~ 185 (270)
T 1rwi_B 129 NRVVKLAAGSKTQTVLPFT--------------GLNDPDGVAVD-----NSGNVYVTDTDNNRVVKL--EAESNNQ--VV 185 (270)
T ss_dssp TEEEEECTTCCSCEECCCC--------------SCCSCCCEEEC-----TTCCEEEEEGGGTEEEEE--CTTTCCE--EE
T ss_pred CEEEEEECCCceeEeeccc--------------cCCCceeEEEe-----CCCCEEEEECCCCEEEEE--ecCCCce--Ee
Confidence 8999997654432221110 11246788998 889877777778899999 4444431 11
Q ss_pred eeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 237 SYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 237 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
....+...+.+++++++|.++++...++.|.+|+..+......... +...+.+++++|+|+++++.
T Consensus 186 ~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~--------------~~~~p~~i~~~~~g~l~v~~ 251 (270)
T 1rwi_B 186 LPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFT--------------GLNTPLAVAVDSDRTVYVAD 251 (270)
T ss_dssp CCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCC--------------SCSCEEEEEECTTCCEEEEE
T ss_pred ecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccC--------------CCCCceeEEECCCCCEEEEE
Confidence 1222335678999999998888877889999999876544322111 11367899999999866653
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.6e-11 Score=98.34 Aligned_cols=150 Identities=11% Similarity=0.052 Sum_probs=110.5
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeecccc-ccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEE
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHN-SWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIW 162 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iw 162 (318)
+++|++++.|+.|.+||.++++ .+..+..+. ..++++.+ .++|++|+ +.++.|..|
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~--------------~~w~~~~~~~~~~~~~~~-------~pdG~ilv--s~~~~V~~~ 61 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKE--------------IVWEYPLEKGWECNSVAA-------TKAGEILF--SYSKGAKMI 61 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTE--------------EEEEEECCTTCCCCEEEE-------CTTSCEEE--ECBSEEEEE
T ss_pred CcEEEeeCCCCEEEEEECCCCe--------------EEEEeCCCccCCCcCeEE-------CCCCCEEE--eCCCCEEEE
Confidence 5899999999999999998854 556666655 46788999 89999888 457889999
Q ss_pred ECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeC-CCcEEEeeeccCCCeeeEeeeee--
Q 021036 163 DGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKG-SGSFDLWKCDISCNKFDKVGSYN-- 239 (318)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~-- 239 (318)
|. +++.+..+.... ...+.++.+. ++|+++++.+. ++.|..+ +. +++ .+.++.
T Consensus 62 d~-~G~~~W~~~~~~-------------~~~~~~~~~~-----~dG~~lv~~~~~~~~v~~v--d~-~Gk--~l~~~~~~ 117 (276)
T 3no2_A 62 TR-DGRELWNIAAPA-------------GCEMQTARIL-----PDGNALVAWCGHPSTILEV--NM-KGE--VLSKTEFE 117 (276)
T ss_dssp CT-TSCEEEEEECCT-------------TCEEEEEEEC-----TTSCEEEEEESTTEEEEEE--CT-TSC--EEEEEEEC
T ss_pred CC-CCCEEEEEcCCC-------------CccccccEEC-----CCCCEEEEecCCCCEEEEE--eC-CCC--EEEEEecc
Confidence 99 788888776431 1246677887 99999999886 6666665 54 343 233332
Q ss_pred ----cccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeee
Q 021036 240 ----AHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVS 280 (318)
Q Consensus 240 ----~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 280 (318)
.+......+.+.++|.++++...++.|..||.....+.++.
T Consensus 118 ~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G~~~w~~~ 162 (276)
T 3no2_A 118 TGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQLLNSVK 162 (276)
T ss_dssp CSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTTSCEEEEEE
T ss_pred CCCCcccccccCceECCCCCEEEEecCCCEEEEECCCCCEEEEEE
Confidence 22234556788999999999999999999999844444443
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.39 E-value=9.2e-11 Score=99.02 Aligned_cols=190 Identities=12% Similarity=0.022 Sum_probs=116.2
Q ss_pred CCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCC---Cc--EEEEE
Q 021036 26 SKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRS---GK--VSLWR 100 (318)
Q Consensus 26 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~d---g~--i~iw~ 100 (318)
+..+.+||+.+++..+ + . .+..+.|+|++ +.|+..+.+ +. |.+|+
T Consensus 42 ~~~l~~~d~~~~~~~~-l--------~---~~~~~~~SpDg------------------~~la~~~~~~~~~~~~l~~~~ 91 (347)
T 2gop_A 42 ENTIVIENLKNNARRF-I--------E---NATMPRISPDG------------------KKIAFMRANEEKKVSEIWVAD 91 (347)
T ss_dssp EEEEEEEETTTCCEEE-E--------E---SCEEEEECTTS------------------SEEEEEEEETTTTEEEEEEEE
T ss_pred cceEEEEeCCCCceEE-c--------c---cCCCeEECCCC------------------CEEEEEEeccCCCcceEEEEE
Confidence 5567777877665311 1 1 13347888887 887776543 33 77777
Q ss_pred ccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCC------------------------
Q 021036 101 ICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSD------------------------ 156 (318)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d------------------------ 156 (318)
+.+++ ...... +.. +..+.| +++|+.|+.++.+
T Consensus 92 ~~~g~--------------~~~l~~-~~~-~~~~~w-------spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 148 (347)
T 2gop_A 92 LETLS--------------SKKILE-AKN-IRSLEW-------NEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFD 148 (347)
T ss_dssp TTTTE--------------EEEEEE-ESE-EEEEEE-------CTTSSEEEEEEECCCC---------CCCC--------
T ss_pred CCCCc--------------eEEEEc-CCC-ccceeE-------CCCCCEEEEEEccCCCcCCcEEEcccceeecCccccc
Confidence 77644 222222 233 899999 8999988887642
Q ss_pred ---CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCC-------cEEEeeec
Q 021036 157 ---GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSG-------SFDLWKCD 226 (318)
Q Consensus 157 ---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg-------~i~vw~~~ 226 (318)
..|.+||+.+++....+.. . .+..+.|+ |+| +++++..++ ...+|.++
T Consensus 149 ~~~~~l~~~d~~~~~~~~~l~~---------------~-~~~~~~~s-----pdg-~~~~~~~~~~~~~~~~~~~l~~~d 206 (347)
T 2gop_A 149 GEKTTFWIFDTESEEVIEEFEK---------------P-RFSSGIWH-----RDK-IVVNVPHREIIPQYFKFWDIYIWE 206 (347)
T ss_dssp -CEEEEEEEETTTTEEEEEEEE---------------E-TTCEEEEE-----TTE-EEEEEECCCSSCCSSCCEEEEEEE
T ss_pred CccceEEEEECCCCeEEeeecC---------------C-CcccccCC-----CCe-EEEEEecccccccccccccEEEeC
Confidence 5788899987765333221 1 56788999 999 777776542 56777667
Q ss_pred cCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCC--------CcEEEEEecCCceeeeecCCCCCCccccccCCCcc
Q 021036 227 ISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQD--------NFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAF 298 (318)
Q Consensus 227 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d--------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 298 (318)
+++... +..+ ..+..+ +|+|++|+.++.+ ..|.+|| ++....+... +.
T Consensus 207 --~~~~~~---l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~--------------~~ 262 (347)
T 2gop_A 207 --DGKEEK---MFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDE--------------VD 262 (347)
T ss_dssp --TTEEEE---EEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTT--------------CC
T ss_pred --CCceEE---eccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEecccc--------------CC
Confidence 444322 3333 444444 9999988777644 3677777 4443322211 22
Q ss_pred eeeeE-EEEcCCCcEEEEE
Q 021036 299 VSCLG-MAVSPGNLVVAMV 316 (318)
Q Consensus 299 ~~v~~-v~~sp~~~~l~~~ 316 (318)
..+.. +.|+ |+ +++++
T Consensus 263 ~~~~~~~~~s-dg-~~~~~ 279 (347)
T 2gop_A 263 RGVGQAKIKD-GK-VYFTL 279 (347)
T ss_dssp SEEEEEEEET-TE-EEEEE
T ss_pred cccCCccEEc-Cc-EEEEE
Confidence 35565 7787 77 55554
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.39 E-value=2.3e-11 Score=102.26 Aligned_cols=181 Identities=8% Similarity=-0.007 Sum_probs=119.6
Q ss_pred ccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEe
Q 021036 75 VPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS 154 (318)
Q Consensus 75 v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~ 154 (318)
|.++.+++++..++..+.++.++.|. ......+..+...+.+++| ++++++++++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~-------~~~g~l~~~~~ 63 (333)
T 2dg1_A 8 LPTLFYSGKSNSAVPIISESELQTIT-----------------AEPWLEISKKGLQLEGLNF-------DRQGQLFLLDV 63 (333)
T ss_dssp CCBCCSCGGGGCSSCCCCGGGSCEEE-----------------CEEEEEEESSCCCEEEEEE-------CTTSCEEEEET
T ss_pred cceeeecCCccceeEEeecccCcccc-----------------cceeEEEeccCccccCcEE-------CCCCCEEEEEC
Confidence 34444444446677667788899892 2244556666677899999 88999888888
Q ss_pred CCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCC----CcEEEeeeccCCC
Q 021036 155 SDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGS----GSFDLWKCDISCN 230 (318)
Q Consensus 155 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~d----g~i~vw~~~~~~~ 230 (318)
.++.|.+||..+++....... +...+.+++++ ++++++++...+ +.|.+| +..++
T Consensus 64 ~~~~i~~~d~~~~~~~~~~~~--------------~~~~~~~i~~~-----~dg~l~v~~~~~~~~~~~i~~~--d~~~~ 122 (333)
T 2dg1_A 64 FEGNIFKINPETKEIKRPFVS--------------HKANPAAIKIH-----KDGRLFVCYLGDFKSTGGIFAA--TENGD 122 (333)
T ss_dssp TTCEEEEECTTTCCEEEEEEC--------------SSSSEEEEEEC-----TTSCEEEEECTTSSSCCEEEEE--CTTSC
T ss_pred CCCEEEEEeCCCCcEEEEeeC--------------CCCCcceEEEC-----CCCcEEEEeCCCCCCCceEEEE--eCCCC
Confidence 899999999987765433211 12368899998 899988877666 678888 55555
Q ss_pred eeeEeeeeecccCceeEEEEcCCCCEEEEecC------CCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEE
Q 021036 231 KFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQ------DNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGM 304 (318)
Q Consensus 231 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v 304 (318)
....+.....+...+..++++|+|+++++... .+.|..+|..++....+.... ..+.++
T Consensus 123 ~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---------------~~~~~i 187 (333)
T 2dg1_A 123 NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNI---------------SVANGI 187 (333)
T ss_dssp SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEE---------------SSEEEE
T ss_pred EEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCC---------------Ccccce
Confidence 43222111124457899999999987776653 245555655544444332111 145789
Q ss_pred EEcCCCcEEEE
Q 021036 305 AVSPGNLVVAM 315 (318)
Q Consensus 305 ~~sp~~~~l~~ 315 (318)
+|+|||+.|..
T Consensus 188 ~~~~dg~~l~v 198 (333)
T 2dg1_A 188 ALSTDEKVLWV 198 (333)
T ss_dssp EECTTSSEEEE
T ss_pred EECCCCCEEEE
Confidence 99999875543
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.7e-10 Score=96.82 Aligned_cols=218 Identities=8% Similarity=-0.171 Sum_probs=136.5
Q ss_pred eCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEEEEccC
Q 021036 24 SKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICV 103 (318)
Q Consensus 24 s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~ 103 (318)
+.++++.++|..+++....+...... ...-.....+.+. + ++++++...++.|.+||.++
T Consensus 14 ~~~~~l~~~d~~t~~~~~~i~~~~n~-~~lg~~~~~i~~~--~-----------------~~lyv~~~~~~~v~viD~~t 73 (328)
T 3dsm_A 14 YSNATLSYYDPATCEVENEVFYRANG-FKLGDVAQSMVIR--D-----------------GIGWIVVNNSHVIFAIDINT 73 (328)
T ss_dssp SCCBEEEEEETTTTEEECSHHHHHHS-SCCBSCEEEEEEE--T-----------------TEEEEEEGGGTEEEEEETTT
T ss_pred CCCceEEEEECCCCEEhhhhHhhhcC-cccCccceEEEEE--C-----------------CEEEEEEcCCCEEEEEECcc
Confidence 45899999999998765554221100 0000001113332 1 25666677789999999998
Q ss_pred CccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccc
Q 021036 104 PKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLL 183 (318)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~ 183 (318)
++ .+..+. .......+++ +++++++++...++.|.+||..+++....+.....
T Consensus 74 ~~--------------~~~~i~-~~~~p~~i~~-------~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~----- 126 (328)
T 3dsm_A 74 FK--------------EVGRIT-GFTSPRYIHF-------LSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDM----- 126 (328)
T ss_dssp CC--------------EEEEEE-CCSSEEEEEE-------EETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTC-----
T ss_pred cE--------------EEEEcC-CCCCCcEEEE-------eCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCc-----
Confidence 54 444453 2456788999 77786555555899999999998887765543220
Q ss_pred eeeeeecccceeEEEEeeccCCCCceEEEEEe-CCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecC
Q 021036 184 KEVVTVNTVPISVLSLILPVQSPRLMLLAVGK-GSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQ 262 (318)
Q Consensus 184 ~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 262 (318)
.........+++. ++.++++.. .++.|.++ |..+++ .+.++.. ......+.++|+|++++++..
T Consensus 127 ----~~~~~~p~~i~~~------~~~lyv~~~~~~~~v~vi--D~~t~~--~~~~i~~-g~~p~~i~~~~dG~l~v~~~~ 191 (328)
T 3dsm_A 127 ----DMESGSTEQMVQY------GKYVYVNCWSYQNRILKI--DTETDK--VVDELTI-GIQPTSLVMDKYNKMWTITDG 191 (328)
T ss_dssp ----CTTTCBCCCEEEE------TTEEEEEECTTCCEEEEE--ETTTTE--EEEEEEC-SSCBCCCEECTTSEEEEEBCC
T ss_pred ----cccCCCcceEEEE------CCEEEEEcCCCCCEEEEE--ECCCCe--EEEEEEc-CCCccceEEcCCCCEEEEECC
Confidence 0000123345554 455555544 48899999 666665 3444433 234578899999997777765
Q ss_pred C----------CcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 263 D----------NFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 263 d----------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
+ +.|.++|..++++......+.. .....++|+||++.|.++
T Consensus 192 ~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g-------------~~p~~la~~~d~~~lyv~ 242 (328)
T 3dsm_A 192 GYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLG-------------DWPSEVQLNGTRDTLYWI 242 (328)
T ss_dssp BCTTCSSCBCCCEEEEEETTTTEEEEEEECCTT-------------CCCEEEEECTTSCEEEEE
T ss_pred CccCCccccCCceEEEEECCCCeEEEEEecCCC-------------CCceeEEEecCCCEEEEE
Confidence 4 7899999988776533222211 145899999998887654
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-10 Score=107.83 Aligned_cols=212 Identities=7% Similarity=-0.058 Sum_probs=127.1
Q ss_pred eeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCc-------
Q 021036 23 ASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGK------- 95 (318)
Q Consensus 23 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~------- 95 (318)
|+.+.+|++||+.+++.+....... .+ ...++|+|++ +.|+.++.|..
T Consensus 143 G~~~~~i~v~dl~tg~~~~~~~~~~--~~-----~~~~~wspDg------------------~~l~~~~~d~~~~~~~~~ 197 (695)
T 2bkl_A 143 AADEAVLHVIDVDSGEWSKVDVIEG--GK-----YATPKWTPDS------------------KGFYYEWLPTDPSIKVDE 197 (695)
T ss_dssp TCSCCEEEEEETTTCCBCSSCCBSC--CT-----TCCCEECTTS------------------SEEEEEECCCCTTSCGGG
T ss_pred CCceEEEEEEECCCCCCcCCcccCc--cc-----ccceEEecCC------------------CEEEEEEecCCCCCcccc
Confidence 4445789999999987641111111 00 0238888888 88888887766
Q ss_pred ------EEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCC----cEEEEECC
Q 021036 96 ------VSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDG----SVRIWDGY 165 (318)
Q Consensus 96 ------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~----~v~iwd~~ 165 (318)
|++|++.++... ..++.....|...+..+.| +++|++|+.++.++ .|.+|+..
T Consensus 198 ~~~~~~v~~~~l~t~~~~----------~~lv~~~~~~~~~~~~~~~-------SpDG~~l~~~~~~~~~~~~l~~~~~~ 260 (695)
T 2bkl_A 198 RPGYTTIRYHTLGTEPSK----------DTVVHERTGDPTTFLQSDL-------SRDGKYLFVYILRGWSENDVYWKRPG 260 (695)
T ss_dssp GGGGCEEEEEETTSCGGG----------CEEEECCCCCTTCEEEEEE-------CTTSCCEEEEEEETTTEEEEEEECTT
T ss_pred CCCCCEEEEEECCCCchh----------ceEEEecCCCCEEEEEEEE-------CCCCCEEEEEEeCCCCceEEEEEcCC
Confidence 999999876421 1233344456678899999 99999988887666 67777654
Q ss_pred CcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe---CCCcEEEeeeccCCCeeeEeeeeecc-
Q 021036 166 IQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK---GSGSFDLWKCDISCNKFDKVGSYNAH- 241 (318)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~---~dg~i~vw~~~~~~~~~~~~~~~~~h- 241 (318)
+++.. .+..+ ...+....+. +|.+++.+. .++.|.+| +..++.......+..+
T Consensus 261 ~~~~~-~l~~~--------------~~~~~~~~~~------~g~l~~~s~~~~~~~~l~~~--d~~~~~~~~~~~l~~~~ 317 (695)
T 2bkl_A 261 EKDFR-LLVKG--------------VGAKYEVHAW------KDRFYVLTDEGAPRQRVFEV--DPAKPARASWKEIVPED 317 (695)
T ss_dssp CSSCE-EEEEC--------------SSCCEEEEEE------TTEEEEEECTTCTTCEEEEE--BTTBCSGGGCEEEECCC
T ss_pred CCceE-EeecC--------------CCceEEEEec------CCcEEEEECCCCCCCEEEEE--eCCCCCccCCeEEecCC
Confidence 44322 22211 1133333443 455555544 25678888 4444331011223323
Q ss_pred -cCceeEEEEcCCCCEEEEecCCCcEEEEEec--CCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEE
Q 021036 242 -DQVVTGLAWAFDGCCLYSCSQDNFVRSWIFH--GNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVA 314 (318)
Q Consensus 242 -~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~ 314 (318)
...+..++|+ ++.++++...|+..+||.+. ++....+.... .+.+..++++|+++.++
T Consensus 318 ~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~--------------~~~v~~~~~s~d~~~l~ 378 (695)
T 2bkl_A 318 SSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPG--------------VGAASNLMGLEDLDDAY 378 (695)
T ss_dssp SSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSS--------------SSEECCCBSCTTCSEEE
T ss_pred CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCC--------------CeEEEEeecCCCCCEEE
Confidence 4467888888 66788899999998888765 23233332221 13566777777776555
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.35 E-value=1.3e-09 Score=90.04 Aligned_cols=218 Identities=10% Similarity=0.001 Sum_probs=131.9
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCc
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGK 95 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~ 95 (318)
....+++....+.|..||..+++. ..+. ... .+.+++++|++ +++++. ++.
T Consensus 24 ~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-----~~~---~~~~i~~~~dG------------------~l~v~~--~~~ 74 (297)
T 3g4e_A 24 SNSLLFVDIPAKKVCRWDSFTKQV-QRVT-----MDA---PVSSVALRQSG------------------GYVATI--GTK 74 (297)
T ss_dssp TTEEEEEETTTTEEEEEETTTCCE-EEEE-----CSS---CEEEEEEBTTS------------------SEEEEE--TTE
T ss_pred CCEEEEEECCCCEEEEEECCCCcE-EEEe-----CCC---ceEEEEECCCC------------------CEEEEE--CCe
Confidence 334456666678888888876543 1111 111 13346666666 765543 567
Q ss_pred EEEEEccCCccccccccccCCceeEEeeecc--ccccEEEEEeeeecCCCCCCCcEEEEEeCC---------CcEEEEEC
Q 021036 96 VSLWRICVPKCYSVEDCKVPTTAVLIGLFQA--HNSWITSISLAVLSSDSSNPQVLLVTGSSD---------GSVRIWDG 164 (318)
Q Consensus 96 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d---------~~v~iwd~ 164 (318)
|.+||.++++. +.+..... ....++.+++ .++|+++++...+ ..-.+|.+
T Consensus 75 l~~~d~~~g~~------------~~~~~~~~~~~~~~~~di~~-------d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~ 135 (297)
T 3g4e_A 75 FCALNWKEQSA------------VVLATVDNDKKNNRFNDGKV-------DPAGRYFAGTMAEETAPAVLERHQGALYSL 135 (297)
T ss_dssp EEEEETTTTEE------------EEEEECCTTCSSEEEEEEEE-------CTTSCEEEEEEECCSBTTBCCTTCEEEEEE
T ss_pred EEEEECCCCcE------------EEEEecCCCCCCCCCCCEEE-------CCCCCEEEecCCcccccccccCCCcEEEEE
Confidence 99999987542 22222111 1245789999 8899877765322 23455554
Q ss_pred CC-cceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEE-EEeCCCcEEEeeeccCCCeee---Eeeeee
Q 021036 165 YI-QELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLA-VGKGSGSFDLWKCDISCNKFD---KVGSYN 239 (318)
Q Consensus 165 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~-~~~~dg~i~vw~~~~~~~~~~---~~~~~~ 239 (318)
.. ++...... .....+.++|+ |+++.++ +.+.++.|.+|+++..++... ....+.
T Consensus 136 d~~g~~~~~~~---------------~~~~pngi~~s-----pdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~ 195 (297)
T 3g4e_A 136 FPDHHVKKYFD---------------QVDISNGLDWS-----LDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLE 195 (297)
T ss_dssp CTTSCEEEEEE---------------EESBEEEEEEC-----TTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECC
T ss_pred ECCCCEEEEee---------------ccccccceEEc-----CCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECC
Confidence 42 22221111 11245789999 8997664 555678899997765555432 223333
Q ss_pred cccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEc-CCCcEEEE
Q 021036 240 AHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVS-PGNLVVAM 315 (318)
Q Consensus 240 ~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-p~~~~l~~ 315 (318)
.+...+..++++++|.+.++...++.|..||..+++.......+. ..+++++|. ||++.|..
T Consensus 196 ~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~--------------~~~t~~~f~g~d~~~L~v 258 (297)
T 3g4e_A 196 KEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPV--------------DKTTSCCFGGKNYSEMYV 258 (297)
T ss_dssp GGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSS--------------SBEEEEEEESGGGCEEEE
T ss_pred CCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCC--------------CCceEEEEeCCCCCEEEE
Confidence 344667899999999888877778889999998666543332221 267999998 88765543
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.2e-09 Score=98.05 Aligned_cols=202 Identities=12% Similarity=0.031 Sum_probs=134.2
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEE
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVS 97 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~ 97 (318)
...++.+.++++.++|..+++.+..+...... ..+.++|++ +++++++.|+.|.
T Consensus 168 ~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p--------~~v~~SpDG------------------r~lyv~~~dg~V~ 221 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTYEIKTVLDTGYAV--------HISRLSASG------------------RYLFVIGRDGKVN 221 (567)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEECSSCE--------EEEEECTTS------------------CEEEEEETTSEEE
T ss_pred eEEEEeCCCCeEEEEECCCCeEEEEEeCCCCc--------cceEECCCC------------------CEEEEEcCCCeEE
Confidence 34577788999999999998876665432211 126667766 9999999999999
Q ss_pred EEEcc--CCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCC----CCCcEEEEEeC-CCcEEEEECCCccee
Q 021036 98 LWRIC--VPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSS----NPQVLLVTGSS-DGSVRIWDGYIQELQ 170 (318)
Q Consensus 98 iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~----~~~~~l~s~~~-d~~v~iwd~~~~~~~ 170 (318)
+||+. +. +.+..+.... ....++| + ++|++++++.. +++|.++|..+.+.+
T Consensus 222 viD~~~~t~--------------~~v~~i~~G~-~P~~ia~-------s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~ 279 (567)
T 1qks_A 222 MIDLWMKEP--------------TTVAEIKIGS-EARSIET-------SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPK 279 (567)
T ss_dssp EEETTSSSC--------------CEEEEEECCS-EEEEEEE-------CCSTTCTTTEEEEEEEETTEEEEEETTTCCEE
T ss_pred EEECCCCCC--------------cEeEEEecCC-CCceeEE-------ccccCCCCCEEEEEEccCCeEEEEECCCCcEE
Confidence 99995 43 3445554433 3578999 6 68988887775 599999999998888
Q ss_pred eeecccccccccceeeeeec-ccceeEEEEeeccCCCCc-eEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEE
Q 021036 171 KSAEAHCVPFSLLKEVVTVN-TVPISVLSLILPVQSPRL-MLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGL 248 (318)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~ 248 (318)
..+......+.. ...| ...+..+..+ +++ .+++....+|.|.++| ....+...+..+. .......+
T Consensus 280 ~~i~~~~~~~~~----~~~~p~~rva~i~~s-----~~~~~~vv~~~~~g~v~~vd--~~~~~~~~v~~i~-~~~~~~d~ 347 (567)
T 1qks_A 280 KIQSTRGMTYDE----QEYHPEPRVAAILAS-----HYRPEFIVNVKETGKILLVD--YTDLNNLKTTEIS-AERFLHDG 347 (567)
T ss_dssp EEEECCEECTTT----CCEESCCCEEEEEEC-----SSSSEEEEEETTTTEEEEEE--TTCSSEEEEEEEE-CCSSEEEE
T ss_pred EEEecccccccc----ccccCCCceEEEEEc-----CCCCEEEEEecCCCeEEEEe--cCCCccceeeeee-ccccccCc
Confidence 776543211100 0001 1145667777 554 4555556678888884 4443221333332 33456788
Q ss_pred EEcCCCCEEEEe-cCCCcEEEEEecCCceeee
Q 021036 249 AWAFDGCCLYSC-SQDNFVRSWIFHGNSLSQV 279 (318)
Q Consensus 249 ~~~~~~~~l~s~-~~d~~v~iwd~~~~~~~~~ 279 (318)
.|+|+|++++++ ..++.|.++|+.++++...
T Consensus 348 ~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~ 379 (567)
T 1qks_A 348 GLDGSHRYFITAANARNKLVVIDTKEGKLVAI 379 (567)
T ss_dssp EECTTSCEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred eECCCCCEEEEEeCCCCeEEEEECCCCcEEEE
Confidence 999999987655 4678999999998876543
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.2e-10 Score=96.66 Aligned_cols=150 Identities=10% Similarity=0.048 Sum_probs=92.7
Q ss_pred CcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCC-------cEEEEECCC
Q 021036 94 GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDG-------SVRIWDGYI 166 (318)
Q Consensus 94 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~-------~v~iwd~~~ 166 (318)
..|.+|++.+++ .++.+.. . .+..+.| +++| +++++..++ ...||.+.+
T Consensus 152 ~~l~~~d~~~~~--------------~~~~l~~-~-~~~~~~~-------spdg-~~~~~~~~~~~~~~~~~~~l~~~d~ 207 (347)
T 2gop_A 152 TTFWIFDTESEE--------------VIEEFEK-P-RFSSGIW-------HRDK-IVVNVPHREIIPQYFKFWDIYIWED 207 (347)
T ss_dssp EEEEEEETTTTE--------------EEEEEEE-E-TTCEEEE-------ETTE-EEEEEECCCSSCCSSCCEEEEEEET
T ss_pred ceEEEEECCCCe--------------EEeeecC-C-CcccccC-------CCCe-EEEEEecccccccccccccEEEeCC
Confidence 568889988754 2122333 3 6788999 8899 777776542 344554443
Q ss_pred cceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCC--------cEEEeeeccCCCeeeEeeee
Q 021036 167 QELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSG--------SFDLWKCDISCNKFDKVGSY 238 (318)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg--------~i~vw~~~~~~~~~~~~~~~ 238 (318)
++. ..+.. + ..+..+ + |+|+.|+.++.++ .|.+| + +++ .....
T Consensus 208 ~~~-~~l~~--------------~-~~~~~~--s-----pdg~~l~~~~~~~~~~~~~~~~l~~~--d--~~~--~~~l~ 258 (347)
T 2gop_A 208 GKE-EKMFE--------------K-VSFYAV--D-----SDGERILLYGKPEKKYMSEHNKLYIY--D--GKE--VMGIL 258 (347)
T ss_dssp TEE-EEEEE--------------E-ESEEEE--E-----ECSSCEEEEECCSSSCCCSSCEEEEE--C--SSC--EEESS
T ss_pred Cce-EEecc--------------C-cceeeE--C-----CCCCEEEEEEccccCCccccceEEEE--C--CCc--eEecc
Confidence 332 22211 1 233333 6 8999887776443 46666 5 443 22223
Q ss_pred ecccCceeE-EEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 239 NAHDQVVTG-LAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 239 ~~h~~~v~~-~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
..+...+.. +.|+ ++ ++++++.++.++|| +.++....+... ...|.+++|+| .+++++
T Consensus 259 ~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~---------------~~~v~~~~~s~--~~~~~~ 317 (347)
T 2gop_A 259 DEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAKG---------------RHWIMGFDVDE--IVVYLK 317 (347)
T ss_dssp TTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEECS---------------SSEEEEEEESS--SEEEEE
T ss_pred ccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEecC---------------CCeEEeeeeeC--cEEEEE
Confidence 455677886 8999 88 88999999999999 875544333222 13788999999 455443
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.32 E-value=9.9e-10 Score=93.39 Aligned_cols=126 Identities=10% Similarity=-0.001 Sum_probs=93.7
Q ss_pred CccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEE
Q 021036 83 WFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIW 162 (318)
Q Consensus 83 ~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iw 162 (318)
++++|+++ .++.|++||+.+-. .......|..++.++.+ .+.. +++++.||.|.+|
T Consensus 96 d~~~L~v~-~~~~l~v~dv~sl~--------------~~~~~~~~~~~v~~i~~-------~~p~--~av~~~dG~L~v~ 151 (388)
T 1xip_A 96 HGDQVLVS-TRNALYSLDLEELS--------------EFRTVTSFEKPVFQLKN-------VNNT--LVILNSVNDLSAL 151 (388)
T ss_dssp ETTEEEEE-ESSEEEEEESSSTT--------------CEEEEEECSSCEEEEEE-------CSSE--EEEEETTSEEEEE
T ss_pred CCCEEEEE-cCCcEEEEEchhhh--------------ccCccceeecceeeEEe-------cCCC--EEEEECCCCEEEE
Confidence 45899998 88999999998743 22334566777888887 3332 8889999999999
Q ss_pred ECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeee----
Q 021036 163 DGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSY---- 238 (318)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~---- 238 (318)
|+.+++.... ...|++++|+ |+| ++.|..||++++|+.+ ........++
T Consensus 152 dl~~~~~~~~------------------~~~Vs~v~WS-----pkG--~~vg~~dg~i~~~~~~--~~~~~~k~~I~~Pp 204 (388)
T 1xip_A 152 DLRTKSTKQL------------------AQNVTSFDVT-----NSQ--LAVLLKDRSFQSFAWR--NGEMEKQFEFSLPS 204 (388)
T ss_dssp ETTTCCEEEE------------------EESEEEEEEC-----SSE--EEEEETTSCEEEEEEE--TTEEEEEEEECCCH
T ss_pred EccCCccccc------------------cCCceEEEEc-----CCc--eEEEEcCCcEEEEcCC--CccccccceecCCc
Confidence 9997765431 1279999999 888 6789999999999543 4432112233
Q ss_pred --e---cccCceeEEEEcCCCCEEEE
Q 021036 239 --N---AHDQVVTGLAWAFDGCCLYS 259 (318)
Q Consensus 239 --~---~h~~~v~~~~~~~~~~~l~s 259 (318)
. +|...|.++.|.+++.++++
T Consensus 205 ~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 205 ELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp HHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred ccccccCCCeeEEEEEEecCCeEEEE
Confidence 2 37788999999999988876
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=2.5e-10 Score=105.99 Aligned_cols=188 Identities=7% Similarity=-0.118 Sum_probs=116.0
Q ss_pred ccccCCCCCccEEEEecCCC-----cEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcE
Q 021036 75 VPQNGSSNWFSILAVGGRSG-----KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVL 149 (318)
Q Consensus 75 v~~~~~s~~~~~l~~g~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~ 149 (318)
+....+||+|++||.+..++ .|++||+.+++. ...... ...+..++| +++|+.
T Consensus 127 ~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~--------------~~~~~~-~~~~~~~~w-------spDg~~ 184 (710)
T 2xdw_A 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKE--------------LPDVLE-RVKFSCMAW-------THDGKG 184 (710)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEE--------------EEEEEE-EECSCCEEE-------CTTSSE
T ss_pred EEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCC--------------Cccccc-CcccceEEE-------EeCCCE
Confidence 34444444458888765433 899999998653 221111 123677999 999999
Q ss_pred EEEEeCCCc----------------EEEEECCCccee--eeecccccccccceeeeeecccceeEEEEeeccCCCCceEE
Q 021036 150 LVTGSSDGS----------------VRIWDGYIQELQ--KSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLL 211 (318)
Q Consensus 150 l~s~~~d~~----------------v~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l 211 (318)
|+.++.++. |++|++.+++.. ..+.... +...+..+.|+ |+|++|
T Consensus 185 l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~------------~~~~~~~~~~S-----pDg~~l 247 (710)
T 2xdw_A 185 MFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPD------------EPKWMGGAELS-----DDGRYV 247 (710)
T ss_dssp EEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTT------------CTTCEEEEEEC-----TTSCEE
T ss_pred EEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCC------------CCeEEEEEEEc-----CCCCEE
Confidence 999988766 999999876532 1111111 12245678898 999988
Q ss_pred EEEeC-----CCcEEEeeeccCC----CeeeEeeeeecccCceeEEEEcCCCCEEEEecCC----CcEEEEEecCCc---
Q 021036 212 AVGKG-----SGSFDLWKCDISC----NKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQD----NFVRSWIFHGNS--- 275 (318)
Q Consensus 212 ~~~~~-----dg~i~vw~~~~~~----~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d----~~v~iwd~~~~~--- 275 (318)
+.++. +..|++|+++... +.. ....+..+...+.. .|+|+|..|+..+.+ +.|.+||+.++.
T Consensus 248 ~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~ 325 (710)
T 2xdw_A 248 LLSIREGCDPVNRLWYCDLQQESNGITGIL-KWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESK 325 (710)
T ss_dssp EEEEECSSSSCCEEEEEEGGGSSSSSCSSC-CCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGG
T ss_pred EEEEEccCCCccEEEEEECcccccccCCcc-ceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCccc
Confidence 88764 5678888543200 210 22344555555554 488998877655543 369999987753
Q ss_pred eeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 276 LSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
...+..+... ..+.+++|++++.++++.
T Consensus 326 ~~~l~~~~~~-------------~~~~~~~~~~~~~lv~~~ 353 (710)
T 2xdw_A 326 WKVLVPEHEK-------------DVLEWVACVRSNFLVLCY 353 (710)
T ss_dssp CEEEECCCSS-------------CEEEEEEEETTTEEEEEE
T ss_pred ceeccCCCCC-------------CeEEEEEEEcCCEEEEEE
Confidence 2333222211 257788888777777665
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=7.5e-09 Score=85.06 Aligned_cols=181 Identities=8% Similarity=-0.059 Sum_probs=120.3
Q ss_pred ccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCC
Q 021036 77 QNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSD 156 (318)
Q Consensus 77 ~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d 156 (318)
++.+++++.++++...++.|..|+.+ ++ .... .+......+.++.+ .+++.++++...+
T Consensus 61 ~i~~~~~g~l~v~~~~~~~i~~~~~~-g~------------~~~~-~~~~~~~~~~~i~~-------~~~g~l~v~~~~~ 119 (299)
T 2z2n_A 61 CLTISSDGEVWFTENAANKIGRITKK-GI------------IKEY-TLPNPDSAPYGITE-------GPNGDIWFTEMNG 119 (299)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTT-SC------------EEEE-ECSSTTCCEEEEEE-------CTTSCEEEEETTT
T ss_pred eEEECCCCCEEEeCCCCCeEEEECCC-Cc------------EEEE-eCCCcCCCceeeEE-------CCCCCEEEEecCC
Confidence 33444445888887778889999876 22 1111 12224457899999 7888888887778
Q ss_pred CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEee
Q 021036 157 GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVG 236 (318)
Q Consensus 157 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 236 (318)
+.|..||. +++...... . .....+..++++ +++.++++...++.|..| +. +++....
T Consensus 120 ~~i~~~d~-~g~~~~~~~-~------------~~~~~~~~i~~~-----~~g~l~v~~~~~~~i~~~--~~-~g~~~~~- 176 (299)
T 2z2n_A 120 NRIGRITD-DGKIREYEL-P------------NKGSYPSFITLG-----SDNALWFTENQNNAIGRI--TE-SGDITEF- 176 (299)
T ss_dssp TEEEEECT-TCCEEEEEC-S------------STTCCEEEEEEC-----TTSCEEEEETTTTEEEEE--CT-TCCEEEE-
T ss_pred ceEEEECC-CCCEEEecC-C------------CCCCCCceEEEc-----CCCCEEEEeCCCCEEEEE--cC-CCcEEEe-
Confidence 89999998 444332111 0 012357888998 899888877777889988 55 4443221
Q ss_pred eeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 237 SYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 237 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
........+.+++++++|.++++...++.|.+||. ++....+.... +...+.+++++++|++.++
T Consensus 177 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~-------------~~~~~~~i~~~~~g~l~v~ 241 (299)
T 2z2n_A 177 KIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPT-------------PNARPHAITAGAGIDLWFT 241 (299)
T ss_dssp ECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSS-------------TTCCEEEEEECSTTCEEEE
T ss_pred eCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCC-------------CCCCceeEEECCCCCEEEe
Confidence 12234456789999999997777777889999998 65554432221 1236789999999886655
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.8e-10 Score=106.67 Aligned_cols=187 Identities=7% Similarity=-0.110 Sum_probs=112.7
Q ss_pred cccccCCCCCccEEE-----EecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCc
Q 021036 74 PVPQNGSSNWFSILA-----VGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQV 148 (318)
Q Consensus 74 ~v~~~~~s~~~~~l~-----~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~ 148 (318)
.+....+||+|++|| .|+.+..|++||+.+++... ...+.. .....++| +++|+
T Consensus 122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~------------~~~~~~--~~~~~~~w-------spDg~ 180 (695)
T 2bkl_A 122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK------------VDVIEG--GKYATPKW-------TPDSK 180 (695)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS------------SCCBSC--CTTCCCEE-------CTTSS
T ss_pred EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC------------CcccCc--ccccceEE-------ecCCC
Confidence 334444444448888 45556789999999875310 001111 11267899 99999
Q ss_pred EEEEEeCCCc-------------EEEEECCCccee--eeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEE
Q 021036 149 LLVTGSSDGS-------------VRIWDGYIQELQ--KSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAV 213 (318)
Q Consensus 149 ~l~s~~~d~~-------------v~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~ 213 (318)
.|+.++.|.. |++|++.+++.. ..+... .+...+..+.|+ |+|++|+.
T Consensus 181 ~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~------------~~~~~~~~~~~S-----pDG~~l~~ 243 (695)
T 2bkl_A 181 GFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERT------------GDPTTFLQSDLS-----RDGKYLFV 243 (695)
T ss_dssp EEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCC------------CCTTCEEEEEEC-----TTSCCEEE
T ss_pred EEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecC------------CCCEEEEEEEEC-----CCCCEEEE
Confidence 9999998776 999999877532 111111 122356788898 99998888
Q ss_pred EeCCC--cEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEec---CCCcEEEEEecCCce---eeeecCCCC
Q 021036 214 GKGSG--SFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCS---QDNFVRSWIFHGNSL---SQVSIPTNT 285 (318)
Q Consensus 214 ~~~dg--~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~---~d~~v~iwd~~~~~~---~~~~~~~~~ 285 (318)
++.++ ...+|-++..++.. ..+..+...+....| ++|.+++... .++.|.+||+.++.. ..+..+..
T Consensus 244 ~~~~~~~~~~l~~~~~~~~~~---~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~- 318 (695)
T 2bkl_A 244 YILRGWSENDVYWKRPGEKDF---RLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDS- 318 (695)
T ss_dssp EEEETTTEEEEEEECTTCSSC---EEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCS-
T ss_pred EEeCCCCceEEEEEcCCCCce---EEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCC-
Confidence 77655 34444335544443 234445555666666 5665444444 357899999877542 33322211
Q ss_pred CCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 286 PGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 286 ~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
...+.+++|+ ++.++++.
T Consensus 319 ------------~~~l~~~~~~-~~~lv~~~ 336 (695)
T 2bkl_A 319 ------------SASLLSVSIV-GGHLSLEY 336 (695)
T ss_dssp ------------SCEEEEEEEE-TTEEEEEE
T ss_pred ------------CCeEEEEEEE-CCEEEEEE
Confidence 1256777887 56666654
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.27 E-value=6e-09 Score=90.10 Aligned_cols=195 Identities=13% Similarity=0.014 Sum_probs=116.3
Q ss_pred ccEEEEecCCC--cEEEEEccCCccccccccccCCceeEEeeecc-ccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEE
Q 021036 84 FSILAVGGRSG--KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQA-HNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVR 160 (318)
Q Consensus 84 ~~~l~~g~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~ 160 (318)
++.|+++..++ .|.+++...+... ..+..+.. ....+.++++ ++++..|+.+..++.|+
T Consensus 182 g~~l~~~d~~~~~~I~~~d~~~~~~~-----------~~~g~~~~~~~~~p~~iav-------~p~~g~lyv~d~~~~I~ 243 (409)
T 3hrp_A 182 KQRVYSIGWEGTHTVYVYMKASGWAP-----------TRIGQLGSTFSGKIGAVAL-------DETEEWLYFVDSNKNFG 243 (409)
T ss_dssp SSEEEEEBSSTTCEEEEEEGGGTTCE-----------EEEEECCTTSCSCCCBCEE-------CTTSSEEEEECTTCEEE
T ss_pred CCcEEEEecCCCceEEEEEcCCCcee-----------EEeeeccchhcCCcEEEEE-------eCCCCeEEEEECCCcEE
Confidence 38888887766 6888887654311 11111112 4456788999 77333444477788999
Q ss_pred EEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCC-CceEEEEEeCCCcEEEeeeccCCCeeeEeeeee
Q 021036 161 IWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSP-RLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYN 239 (318)
Q Consensus 161 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 239 (318)
.||..++.... +...... . .....|.+.++++ | ++.++++...++.|+.|+.+ ... ..+.
T Consensus 244 ~~d~~~~~~~~-~~~~~~~-----g--~~~~~P~~~ia~~-----p~~g~lyv~d~~~~~I~~~~~~--g~~----~~~~ 304 (409)
T 3hrp_A 244 RFNVKTQEVTL-IKQLELS-----G--SLGTNPGPYLIYY-----FVDSNFYMSDQNLSSVYKITPD--GEC----EWFC 304 (409)
T ss_dssp EEETTTCCEEE-EEECCCC-----S--CCCCSSCCEEEEE-----TTTTEEEEEETTTTEEEEECTT--CCE----EEEE
T ss_pred EEECCCCCEEE-Eeccccc-----C--CCCCCccccEEEe-----CCCCEEEEEeCCCCEEEEEecC--CCE----EEEE
Confidence 99998765322 1100000 0 0000112389999 7 57777777788889998533 321 1222
Q ss_pred cc---------------cCceeEEEEcCCCCEEEEec-CCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeE
Q 021036 240 AH---------------DQVVTGLAWAFDGCCLYSCS-QDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLG 303 (318)
Q Consensus 240 ~h---------------~~~v~~~~~~~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 303 (318)
++ -.....++++|+|.++++-. .++.|+.|++.++.+..+...+...................+
T Consensus 305 g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~g 384 (409)
T 3hrp_A 305 GSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYD 384 (409)
T ss_dssp ECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEE
T ss_pred eCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceE
Confidence 22 13478999999999888877 889999999877777666554221100000011122346789
Q ss_pred EEEcCCCcEEEE
Q 021036 304 MAVSPGNLVVAM 315 (318)
Q Consensus 304 v~~sp~~~~l~~ 315 (318)
++++|+|.++++
T Consensus 385 iavd~~g~lyVa 396 (409)
T 3hrp_A 385 ICYDGEGGYWIA 396 (409)
T ss_dssp EEECSSSEEEEE
T ss_pred EEEcCCCCEEEE
Confidence 999999876665
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.26 E-value=6.4e-10 Score=90.32 Aligned_cols=180 Identities=11% Similarity=-0.024 Sum_probs=114.7
Q ss_pred cCCCCCccEEE-EecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCC
Q 021036 78 NGSSNWFSILA-VGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSD 156 (318)
Q Consensus 78 ~~~s~~~~~l~-~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d 156 (318)
+.+++++++++ +...++.|.+|+..+... ......+...+.++++ .++++++++.. +
T Consensus 29 i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~--------------~~~~~~~~~~p~~i~~-------~~~g~l~v~~~-~ 86 (270)
T 1rwi_B 29 VAVDSAGNVYVTSEGMYGRVVKLATGSTGT--------------TVLPFNGLYQPQGLAV-------DGAGTVYVTDF-N 86 (270)
T ss_dssp EEECTTCCEEEEECSSSCEEEEECC-------------------EECCCCSCCSCCCEEE-------CTTCCEEEEET-T
T ss_pred eEECCCCCEEEEccCCCCcEEEecCCCccc--------------ceEeeCCcCCcceeEE-------CCCCCEEEEcC-C
Confidence 34444448777 557789999998765321 1111223346788999 78888666665 8
Q ss_pred CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEee
Q 021036 157 GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVG 236 (318)
Q Consensus 157 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 236 (318)
+.|.+||....... .+... ....+..++++ ++|+++++...++.|.+| +..+.. ...
T Consensus 87 ~~i~~~d~~~~~~~-~~~~~-------------~~~~p~~i~~~-----~~g~l~v~~~~~~~i~~~--~~~~~~--~~~ 143 (270)
T 1rwi_B 87 NRVVTLAAGSNNQT-VLPFD-------------GLNYPEGLAVD-----TQGAVYVADRGNNRVVKL--AAGSKT--QTV 143 (270)
T ss_dssp TEEEEECTTCSCCE-ECCCC-------------SCSSEEEEEEC-----TTCCEEEEEGGGTEEEEE--CTTCCS--CEE
T ss_pred CEEEEEeCCCceEe-eeecC-------------CcCCCcceEEC-----CCCCEEEEECCCCEEEEE--ECCCce--eEe
Confidence 89999998765432 22111 11256789998 899988887778899998 433332 111
Q ss_pred eeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 237 SYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 237 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
........+.+++++++|+++++...++.|.+||..+.......... ...+.+++++++|.+.++.
T Consensus 144 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~--------------~~~p~~i~~d~~g~l~v~~ 209 (270)
T 1rwi_B 144 LPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTD--------------ITAPWGIAVDEAGTVYVTE 209 (270)
T ss_dssp CCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSS--------------CCSEEEEEECTTCCEEEEE
T ss_pred eccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccC--------------CCCceEEEECCCCCEEEEE
Confidence 11223345788999999998777777889999998775544322111 1256889999998766553
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=7.9e-09 Score=84.93 Aligned_cols=185 Identities=8% Similarity=-0.014 Sum_probs=123.1
Q ss_pred cccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEE
Q 021036 74 PVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTG 153 (318)
Q Consensus 74 ~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~ 153 (318)
.+.++.++++|+++++...++.|.+|+.. ++. .. .....+...+.++++ .+++.++++.
T Consensus 16 ~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~------------~~-~~~~~~~~~~~~i~~-------~~~g~l~v~~ 74 (299)
T 2z2n_A 16 GPYGITVSDKGKVWITQHKANMISCINLD-GKI------------TE-YPLPTPDAKVMCLTI-------SSDGEVWFTE 74 (299)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-CCE------------EE-EECSSTTCCEEEEEE-------CTTSCEEEEE
T ss_pred CccceEECCCCCEEEEecCCCcEEEEcCC-CCe------------EE-ecCCcccCceeeEEE-------CCCCCEEEeC
Confidence 34445555555888877778899999987 431 11 112234567899999 8888888887
Q ss_pred eCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeee
Q 021036 154 SSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFD 233 (318)
Q Consensus 154 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 233 (318)
..++.|..||.. ++. ..+... .....+..++++ +++.++++...++.|..| +. +++..
T Consensus 75 ~~~~~i~~~~~~-g~~-~~~~~~------------~~~~~~~~i~~~-----~~g~l~v~~~~~~~i~~~--d~-~g~~~ 132 (299)
T 2z2n_A 75 NAANKIGRITKK-GII-KEYTLP------------NPDSAPYGITEG-----PNGDIWFTEMNGNRIGRI--TD-DGKIR 132 (299)
T ss_dssp TTTTEEEEECTT-SCE-EEEECS------------STTCCEEEEEEC-----TTSCEEEEETTTTEEEEE--CT-TCCEE
T ss_pred CCCCeEEEECCC-CcE-EEEeCC------------CcCCCceeeEEC-----CCCCEEEEecCCceEEEE--CC-CCCEE
Confidence 778899999976 332 222111 012357788998 889888887778889998 44 33322
Q ss_pred EeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEE
Q 021036 234 KVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVV 313 (318)
Q Consensus 234 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l 313 (318)
.. ........+..++++++|.++++...++.|..||. ++....+..... ...+.+++++++|.+.
T Consensus 133 ~~-~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~-------------~~~~~~i~~~~~g~l~ 197 (299)
T 2z2n_A 133 EY-ELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTP-------------ASGPVGITKGNDDALW 197 (299)
T ss_dssp EE-ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSST-------------TCCEEEEEECTTSSEE
T ss_pred Ee-cCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCC-------------CCcceeEEECCCCCEE
Confidence 21 22234456889999999988887777889999998 655544322211 1256789999988766
Q ss_pred EEE
Q 021036 314 AMV 316 (318)
Q Consensus 314 ~~~ 316 (318)
++.
T Consensus 198 v~~ 200 (299)
T 2z2n_A 198 FVE 200 (299)
T ss_dssp EEE
T ss_pred EEc
Confidence 553
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=1e-08 Score=85.93 Aligned_cols=173 Identities=10% Similarity=0.006 Sum_probs=103.7
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeecc--ccccEEEEEeeeecCCCCCCCcEEEEEeC------C
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQA--HNSWITSISLAVLSSDSSNPQVLLVTGSS------D 156 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~p~~~~~~~~~~~l~s~~~------d 156 (318)
+++++. .+ .|.+||.++++. ..+..... ....++++.+ +++|+++++... .
T Consensus 102 ~l~v~~-~~-gl~~~d~~~g~~------------~~~~~~~~~~~~~~~~~i~~-------d~~G~l~v~~~~~~~~~~~ 160 (326)
T 2ghs_A 102 KQLIAS-DD-GLFLRDTATGVL------------TLHAELESDLPGNRSNDGRM-------HPSGALWIGTMGRKAETGA 160 (326)
T ss_dssp EEEEEE-TT-EEEEEETTTCCE------------EEEECSSTTCTTEEEEEEEE-------CTTSCEEEEEEETTCCTTC
T ss_pred eEEEEE-CC-CEEEEECCCCcE------------EEEeeCCCCCCCCCCCCEEE-------CCCCCEEEEeCCCcCCCCc
Confidence 776654 44 489999887652 12211111 1246889999 888987776542 2
Q ss_pred CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEE-eCCCcEEEeeeccCCC-ee--
Q 021036 157 GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVG-KGSGSFDLWKCDISCN-KF-- 232 (318)
Q Consensus 157 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~-~~dg~i~vw~~~~~~~-~~-- 232 (318)
+.|..++ +++... +.. .....+.++|+ |+++.++.+ +.++.|.+|+++..++ ..
T Consensus 161 ~~l~~~~--~g~~~~-~~~--------------~~~~~~~i~~s-----~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~ 218 (326)
T 2ghs_A 161 GSIYHVA--KGKVTK-LFA--------------DISIPNSICFS-----PDGTTGYFVDTKVNRLMRVPLDARTGLPTGK 218 (326)
T ss_dssp EEEEEEE--TTEEEE-EEE--------------EESSEEEEEEC-----TTSCEEEEEETTTCEEEEEEBCTTTCCBSSC
T ss_pred eEEEEEe--CCcEEE-eeC--------------CCcccCCeEEc-----CCCCEEEEEECCCCEEEEEEcccccCCcccC
Confidence 3455555 343221 110 11245688998 899766554 5578899996542233 21
Q ss_pred -eEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEc-CCC
Q 021036 233 -DKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVS-PGN 310 (318)
Q Consensus 233 -~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-p~~ 310 (318)
+....+......+..++++++|.++++...++.|.+||..+.....+.... ..+.+++|+ |++
T Consensus 219 ~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g~~~~~i~~~~---------------~~~~~~af~g~d~ 283 (326)
T 2ghs_A 219 AEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEVPG---------------KQTTCPAFIGPDA 283 (326)
T ss_dssp CEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEEECSC---------------SBEEEEEEESTTS
T ss_pred ceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCCCEEEEEECCC---------------CCcEEEEEecCCC
Confidence 122223233455678999999987777666788999998544333333222 267899998 887
Q ss_pred cEEEE
Q 021036 311 LVVAM 315 (318)
Q Consensus 311 ~~l~~ 315 (318)
..|..
T Consensus 284 ~~L~v 288 (326)
T 2ghs_A 284 SRLLV 288 (326)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 76543
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=7e-09 Score=93.12 Aligned_cols=177 Identities=7% Similarity=-0.062 Sum_probs=122.2
Q ss_pred CCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEE
Q 021036 82 NWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRI 161 (318)
Q Consensus 82 ~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~i 161 (318)
+.+.++++...++.|.++|..+++ .+..+.. ...+..+.+ +++|+++++++.|+.|.+
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~--------------v~~~i~~-g~~p~~v~~-------SpDGr~lyv~~~dg~V~v 222 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYE--------------IKTVLDT-GYAVHISRL-------SASGRYLFVIGRDGKVNM 222 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCC--------------EEEEEEC-SSCEEEEEE-------CTTSCEEEEEETTSEEEE
T ss_pred CCceEEEEeCCCCeEEEEECCCCe--------------EEEEEeC-CCCccceEE-------CCCCCEEEEEcCCCeEEE
Confidence 344677778889999999999854 4445543 335678999 999999999999999999
Q ss_pred EECC--CcceeeeecccccccccceeeeeecccceeEEEEeeccCC---CCceEEEEEe-CCCcEEEeeeccCCCeeeEe
Q 021036 162 WDGY--IQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQS---PRLMLLAVGK-GSGSFDLWKCDISCNKFDKV 235 (318)
Q Consensus 162 wd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~---~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~ 235 (318)
||+. +++.+..+.... ....++++ + |+|+++++++ .++.|.++ |..+.+ .+
T Consensus 223 iD~~~~t~~~v~~i~~G~---------------~P~~ia~s----~~~~pDGk~l~v~n~~~~~v~Vi--D~~t~~--~~ 279 (567)
T 1qks_A 223 IDLWMKEPTTVAEIKIGS---------------EARSIETS----KMEGWEDKYAIAGAYWPPQYVIM--DGETLE--PK 279 (567)
T ss_dssp EETTSSSCCEEEEEECCS---------------EEEEEEEC----CSTTCTTTEEEEEEEETTEEEEE--ETTTCC--EE
T ss_pred EECCCCCCcEeEEEecCC---------------CCceeEEc----cccCCCCCEEEEEEccCCeEEEE--ECCCCc--EE
Confidence 9996 666665554322 34678887 3 4898887776 56899999 555555 44
Q ss_pred eeeec----------ccC-ceeEEEEcCCCC-EEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeE
Q 021036 236 GSYNA----------HDQ-VVTGLAWAFDGC-CLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLG 303 (318)
Q Consensus 236 ~~~~~----------h~~-~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 303 (318)
..+.. |.. .+..+..++++. +++....+|.|.++|........+..-+.. ....+
T Consensus 280 ~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~-------------~~~~d 346 (567)
T 1qks_A 280 KIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAE-------------RFLHD 346 (567)
T ss_dssp EEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECC-------------SSEEE
T ss_pred EEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeecc-------------ccccC
Confidence 33321 222 577888888765 556667789999999876433222111111 14467
Q ss_pred EEEcCCCcEEEEE
Q 021036 304 MAVSPGNLVVAMV 316 (318)
Q Consensus 304 v~~sp~~~~l~~~ 316 (318)
+.|+|||++++++
T Consensus 347 ~~~~pdgr~~~va 359 (567)
T 1qks_A 347 GGLDGSHRYFITA 359 (567)
T ss_dssp EEECTTSCEEEEE
T ss_pred ceECCCCCEEEEE
Confidence 8999999988765
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.20 E-value=1.8e-08 Score=83.58 Aligned_cols=219 Identities=7% Similarity=-0.027 Sum_probs=125.0
Q ss_pred eeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEEEEcc
Q 021036 23 ASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRIC 102 (318)
Q Consensus 23 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~ 102 (318)
...++.+.+||..+++...........+.. .+..++++++. ++++++.. .+.|.+|+.+
T Consensus 42 ~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~---~~~~i~~~~~~-----------------g~l~v~~~-~~~l~~~d~~ 100 (314)
T 1pjx_A 42 GKPAGEILRIDLKTGKKTVICKPEVNGYGG---IPAGCQCDRDA-----------------NQLFVADM-RLGLLVVQTD 100 (314)
T ss_dssp TEECCEEEEECTTTCCEEEEECCEETTEEC---CEEEEEECSSS-----------------SEEEEEET-TTEEEEEETT
T ss_pred CCCCCEEEEEeCCCCcEEEEEecccCCCCC---CCceEEEecCC-----------------CcEEEEEC-CCCEEEEeCC
Confidence 467888999988776542111100000111 12335555551 36565554 3468889987
Q ss_pred CCccccccccccCCceeEE-eee-c-cccccEEEEEeeeecCCCCCCCcEEEEEeCC---------------CcEEEEEC
Q 021036 103 VPKCYSVEDCKVPTTAVLI-GLF-Q-AHNSWITSISLAVLSSDSSNPQVLLVTGSSD---------------GSVRIWDG 164 (318)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~-~~~-~-~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d---------------~~v~iwd~ 164 (318)
++.. .+ ... . .....+.++.+ .++|+++++...+ +.|..+|.
T Consensus 101 -g~~~------------~~~~~~~~~~~~~~~~~i~~-------d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (314)
T 1pjx_A 101 -GTFE------------EIAKKDSEGRRMQGCNDCAF-------DYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT 160 (314)
T ss_dssp -SCEE------------ECCSBCTTSCBCBCCCEEEE-------CTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT
T ss_pred -CCEE------------EEEeccCCCccccCCcCEEE-------CCCCCEEEEecCcccccccccccccCCCCeEEEECC
Confidence 5421 11 110 1 11245789999 8889888877655 56777765
Q ss_pred CCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEE-eCCCcEEEeeeccCCCeee---Eeeeeec
Q 021036 165 YIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVG-KGSGSFDLWKCDISCNKFD---KVGSYNA 240 (318)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~-~~dg~i~vw~~~~~~~~~~---~~~~~~~ 240 (318)
. ++...... .......++++.... ++++.++.+ ..++.|.+|+.+. .++.. ....+..
T Consensus 161 ~-g~~~~~~~---------------~~~~~~~i~~~~~~d-~dg~~l~v~~~~~~~i~~~~~~~-~g~~~~~~~~~~~~~ 222 (314)
T 1pjx_A 161 D-GQMIQVDT---------------AFQFPNGIAVRHMND-GRPYQLIVAETPTKKLWSYDIKG-PAKIENKKVWGHIPG 222 (314)
T ss_dssp T-SCEEEEEE---------------EESSEEEEEEEECTT-SCEEEEEEEETTTTEEEEEEEEE-TTEEEEEEEEEECCC
T ss_pred C-CCEEEecc---------------CCCCcceEEEecccC-CCCCEEEEEECCCCeEEEEECCC-CCccccceEEEECCC
Confidence 5 43322111 111345566641111 567555444 5678999996542 23221 2222333
Q ss_pred cc-CceeEEEEcCCCCEEEEecCCCcEEEEEecCCcee-eeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 241 HD-QVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLS-QVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 241 h~-~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
+. ..+..++++++|.++++...++.|.+||..++... .+.... ..+.+++|+|+++.|..
T Consensus 223 ~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~---------------~~~~~i~~~~dg~~l~v 284 (314)
T 1pjx_A 223 THEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPF---------------EKPSNLHFKPQTKTIFV 284 (314)
T ss_dssp CSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSS---------------SCEEEEEECTTSSEEEE
T ss_pred CCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCC---------------CCceeEEECCCCCEEEE
Confidence 33 56788999999998888778889999998754433 222221 26789999999985443
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.18 E-value=6.5e-08 Score=79.43 Aligned_cols=182 Identities=10% Similarity=-0.036 Sum_probs=118.5
Q ss_pred ccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCC
Q 021036 77 QNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSD 156 (318)
Q Consensus 77 ~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d 156 (318)
++.++++++++++...++.|..+|.. ++. . ...+......+.++++ .++++++++...+
T Consensus 66 ~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~------------~-~~~~~~~~~~~~~i~~-------~~~g~l~v~~~~~ 124 (300)
T 2qc5_A 66 CLIVSSLGDIWFTENGANKIGKLSKK-GGF------------T-EYPLPQPDSGPYGITE-------GLNGDIWFTQLNG 124 (300)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTT-SCE------------E-EEECSSTTCCEEEEEE-------CSTTCEEEEETTT
T ss_pred eEEECCCCCEEEEecCCCeEEEECCC-CCe------------E-EecCCCCCCCCccceE-------CCCCCEEEEccCC
Confidence 34444445888877778889999987 431 1 1122223467899999 7888888887778
Q ss_pred CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEee
Q 021036 157 GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVG 236 (318)
Q Consensus 157 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 236 (318)
+.|..+|.. ++.... ... .....+..++++ ++++++++...++.|..| +. +++... .
T Consensus 125 ~~i~~~~~~-g~~~~~-~~~------------~~~~~~~~i~~d-----~~g~l~v~~~~~~~i~~~--~~-~g~~~~-~ 181 (300)
T 2qc5_A 125 DRIGKLTAD-GTIYEY-DLP------------NKGSYPAFITLG-----SDNALWFTENQNNSIGRI--TN-TGKLEE-Y 181 (300)
T ss_dssp TEEEEECTT-SCEEEE-ECS------------STTCCEEEEEEC-----TTSSEEEEETTTTEEEEE--CT-TCCEEE-E
T ss_pred CeEEEECCC-CCEEEc-cCC------------CCCCCceeEEEC-----CCCCEEEEecCCCeEEEE--CC-CCcEEE-e
Confidence 899999987 543321 111 012256788898 889877776667888888 44 344222 1
Q ss_pred eeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 237 SYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 237 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
....+...+..++++++|.++++....+.|.+||. ++......... +...+.+++++++|++.++.
T Consensus 182 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~-------------~~~~~~~i~~d~~g~l~v~~ 247 (300)
T 2qc5_A 182 PLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPT-------------PNARPHAITAGKNSEIWFTE 247 (300)
T ss_dssp ECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSS-------------TTCCEEEEEECSTTCEEEEE
T ss_pred eCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCC-------------CCCCceEEEECCCCCEEEec
Confidence 22234456889999999987777777788999998 44444332221 12356889999988765553
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.18 E-value=2.5e-09 Score=90.98 Aligned_cols=97 Identities=11% Similarity=0.134 Sum_probs=67.9
Q ss_pred CCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEe----------CCCcEEE
Q 021036 92 RSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS----------SDGSVRI 161 (318)
Q Consensus 92 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~----------~d~~v~i 161 (318)
.|+.|.+||..+++ .+..+..+..+ .+++ ++++++++++. .++.|.+
T Consensus 29 ~d~~v~v~D~~t~~--------------~~~~i~~g~~p--~i~~-------spdg~~lyv~~~~~~~~~~g~~~~~v~v 85 (361)
T 2oiz_A 29 TESRVHVYDYTNGK--------------FLGMVPTAFNG--HVQV-------SNDGKKIYTMTTYHERITRGKRSDVVEV 85 (361)
T ss_dssp GGCEEEEEETTTCC--------------EEEEEECCEEE--EEEE-------CTTSSEEEEEEEEETTSSSSCEEEEEEE
T ss_pred ccCeEEEEECCCCe--------------EEEEecCCCCC--ceEE-------CCCCCEEEEEEecccccccCCCCCEEEE
Confidence 47899999998754 44556555555 8999 99999999886 3678999
Q ss_pred EECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeC--CCcEEEee
Q 021036 162 WDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKG--SGSFDLWK 224 (318)
Q Consensus 162 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~--dg~i~vw~ 224 (318)
||..+++....+...... ..+......++++ |+|++|++++. ++.|.+||
T Consensus 86 ~d~~t~~~~~~i~~~~~~--------~~~g~~p~~i~~s-----pdg~~l~v~n~~~~~~v~v~d 137 (361)
T 2oiz_A 86 WDADKLTFEKEISLPPKR--------VQGLNYDGLFRQT-----TDGKFIVLQNASPATSIGIVD 137 (361)
T ss_dssp EETTTCCEEEEEEECTTB--------CCBCCCGGGEEEC-----TTSSEEEEEEESSSEEEEEEE
T ss_pred EECcCCcEEEEEEcCccc--------cccCCCcceEEEC-----CCCCEEEEECCCCCCeEEEEE
Confidence 999988877766532110 0011234567787 88888888763 56788884
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.13 E-value=2.6e-08 Score=92.90 Aligned_cols=164 Identities=18% Similarity=0.097 Sum_probs=97.6
Q ss_pred cEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCC-----cEEEEECCCc--
Q 021036 95 KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDG-----SVRIWDGYIQ-- 167 (318)
Q Consensus 95 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~-----~v~iwd~~~~-- 167 (318)
.|++|++.++... ...+.....+...+..+.| +++|++|+..+.++ .|++||+.++
T Consensus 244 ~v~~~~lgt~~~~----------~~lv~~~~~~~~~~~~~~~-------SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~ 306 (741)
T 1yr2_A 244 TVWLHRLGTPQSA----------DQPVFATPELPKRGHGASV-------SSDGRWVVITSSEGTDPVNTVHVARVTNGKI 306 (741)
T ss_dssp EEEEEETTSCGGG----------CEEEECCTTCTTCEEEEEE-------CTTSCEEEEEEECTTCSCCEEEEEEEETTEE
T ss_pred EEEEEECCCCchh----------CEEEeccCCCCeEEEEEEE-------CCCCCEEEEEEEccCCCcceEEEEECCCCCC
Confidence 3888998765421 1223233334446889999 99999888877544 8999998876
Q ss_pred ceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCC----CcEEEeeeccCC--CeeeEeeeeecc
Q 021036 168 ELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGS----GSFDLWKCDISC--NKFDKVGSYNAH 241 (318)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~d----g~i~vw~~~~~~--~~~~~~~~~~~h 241 (318)
+....+..+. ..+... ++ |+|+.|+..+.+ +.|.+| +..+ ..++.+ +..+
T Consensus 307 ~~~~~l~~~~--------------~~~~~~-~~-----~dg~~l~~~s~~~~~~~~l~~~--d~~~~~~~~~~l--~~~~ 362 (741)
T 1yr2_A 307 GPVTALIPDL--------------KAQWDF-VD-----GVGDQLWFVSGDGAPLKKIVRV--DLSGSTPRFDTV--VPES 362 (741)
T ss_dssp CCCEEEECSS--------------SSCEEE-EE-----EETTEEEEEECTTCTTCEEEEE--ECSSSSCEEEEE--ECCC
T ss_pred cccEEecCCC--------------CceEEE-Ee-----ccCCEEEEEECCCCCCCEEEEE--eCCCCccccEEE--ecCC
Confidence 3123332221 122222 34 677777766643 347777 4444 232222 2344
Q ss_pred cCceeEEEEcCCCCEEEEecCCCcEEEEEec--CCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEE
Q 021036 242 DQVVTGLAWAFDGCCLYSCSQDNFVRSWIFH--GNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVA 314 (318)
Q Consensus 242 ~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~ 314 (318)
...+..++|+ ++.++++...|+..+||.+. ++....+.... .+.+..++++|+++.|+
T Consensus 363 ~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~--------------~~~v~~~~~s~d~~~l~ 422 (741)
T 1yr2_A 363 KDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPG--------------IGSASGLSGRPGDRHAY 422 (741)
T ss_dssp SSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSS--------------SCEEEEEECCBTCSCEE
T ss_pred CCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCC--------------CeEEEEeecCCCCCEEE
Confidence 4556677777 55678888899988887665 33333332211 23678889999887555
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.7e-07 Score=79.96 Aligned_cols=233 Identities=9% Similarity=-0.100 Sum_probs=128.2
Q ss_pred CCCCCccceEEeeC--CC---ceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccE
Q 021036 12 MKDSNTHPTVAASK--SK---GNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSI 86 (318)
Q Consensus 12 ~~~~~~~~~~t~s~--d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~ 86 (318)
+.+.+.+.++.... .. ++.++|..+++.+..+.... . . .++++|++ ++
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~-~-------p-~i~~spDg------------------~~ 79 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF-L-------P-NPVAAHSG------------------SE 79 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCC-C-------C-CeEECCCC------------------CE
Confidence 33444555555443 22 77889998877644433211 0 1 26666666 88
Q ss_pred EEEec----------CCCcEEEEEccCCccccccccccCCceeEEeeeccc-------cccEEEEEeeeecCCCCCCCcE
Q 021036 87 LAVGG----------RSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAH-------NSWITSISLAVLSSDSSNPQVL 149 (318)
Q Consensus 87 l~~g~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h-------~~~v~~~~~~p~~~~~~~~~~~ 149 (318)
++++. .++.|.+||..+.+ .+..+... ...-..+.| +++|++
T Consensus 80 lyv~n~~~~~~~rg~~~~~v~viD~~t~~--------------~~~~i~~~~~~~~~~g~~p~~~~~-------spDG~~ 138 (373)
T 2mad_H 80 FALASTSFSRIAKGKRTDYVEVFDPVTFL--------------PIADIELPDAPRFDVGPYSWMNAN-------TPNNAD 138 (373)
T ss_pred EEEEeccccccccCCCCCeEEEEECCCCc--------------EEEEEECCCccccccCCCccceEE-------CCCCCE
Confidence 87775 36789999998754 22222111 123357889 999999
Q ss_pred EEEEeC--CCcEEEEECCCcceeee-ecccccc----cc--------ccee--eeeecccce-----------------e
Q 021036 150 LVTGSS--DGSVRIWDGYIQELQKS-AEAHCVP----FS--------LLKE--VVTVNTVPI-----------------S 195 (318)
Q Consensus 150 l~s~~~--d~~v~iwd~~~~~~~~~-~~~~~~~----~~--------~~~~--~~~~~~~~v-----------------~ 195 (318)
|+++.. ++.|.++| .+++.... +...... .. .... .... ...+ .
T Consensus 139 l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~ 216 (373)
T 2mad_H 139 LLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLT 216 (373)
T ss_pred EEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceee
Confidence 998874 47899999 98887776 5432210 00 0000 0000 0000 0
Q ss_pred EEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeec----------ccCceeEEEEcCCCCEEEEecC---
Q 021036 196 VLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNA----------HDQVVTGLAWAFDGCCLYSCSQ--- 262 (318)
Q Consensus 196 ~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~----------h~~~v~~~~~~~~~~~l~s~~~--- 262 (318)
...+. +++..++..+..+.+.+. |........+..+.- .......+.++|+++.++.+..
T Consensus 217 ~~~~~-----~~~~~~~~~~~~~~v~vi--d~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~ 289 (373)
T 2mad_H 217 QPAQA-----NKSGRIVWPVYSGKILQA--DISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQS 289 (373)
T ss_pred cceeE-----ecCCEEEEEcCCceEEEE--eccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCC
Confidence 11122 333333333356667776 443332112222211 1122344788999887766543
Q ss_pred -------CCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCc-EEEEE
Q 021036 263 -------DNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNL-VVAMV 316 (318)
Q Consensus 263 -------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~l~~~ 316 (318)
.+.|.++|+.+++......... ...+++|+|||+ .++++
T Consensus 290 ~~~~~~~~~~V~VID~~t~~vv~~i~~g~---------------~p~~i~~s~Dg~~~l~v~ 336 (373)
T 2mad_H 290 AWKLHAAAKEVTSVTGLVGQTSSQISLGH---------------DVDAISVAQDGGPDLYAL 336 (373)
T ss_pred cccccCCCCeEEEEECCCCEEEEEEECCC---------------CcCeEEECCCCCeEEEEE
Confidence 3579999999877643322222 358999999998 66654
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.6e-07 Score=77.02 Aligned_cols=184 Identities=9% Similarity=-0.039 Sum_probs=120.3
Q ss_pred ccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEe
Q 021036 75 VPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS 154 (318)
Q Consensus 75 v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~ 154 (318)
+.++.++++++++++...++.|..++.+ ++. . ...+......+.++.+ .++++++++..
T Consensus 106 ~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~------------~-~~~~~~~~~~~~~i~~-------d~~g~l~v~~~ 164 (300)
T 2qc5_A 106 PYGITEGLNGDIWFTQLNGDRIGKLTAD-GTI------------Y-EYDLPNKGSYPAFITL-------GSDNALWFTEN 164 (300)
T ss_dssp EEEEEECSTTCEEEEETTTTEEEEECTT-SCE------------E-EEECSSTTCCEEEEEE-------CTTSSEEEEET
T ss_pred CccceECCCCCEEEEccCCCeEEEECCC-CCE------------E-EccCCCCCCCceeEEE-------CCCCCEEEEec
Confidence 4455555556888887778889999887 431 1 1112333457889999 78888777776
Q ss_pred CCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeE
Q 021036 155 SDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDK 234 (318)
Q Consensus 155 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 234 (318)
.++.|..+|. +++... +... .....+..++++ +++.++++....+.|.+| +. +++...
T Consensus 165 ~~~~i~~~~~-~g~~~~-~~~~------------~~~~~~~~i~~d-----~~g~l~v~~~~~~~i~~~--~~-~g~~~~ 222 (300)
T 2qc5_A 165 QNNSIGRITN-TGKLEE-YPLP------------TNAAAPVGITSG-----NDGALWFVEIMGNKIGRI--TT-TGEISE 222 (300)
T ss_dssp TTTEEEEECT-TCCEEE-EECS------------STTCCEEEEEEC-----TTSSEEEEETTTTEEEEE--CT-TCCEEE
T ss_pred CCCeEEEECC-CCcEEE-eeCC------------CCCCCcceEEEC-----CCCCEEEEccCCCEEEEE--cC-CCcEEE
Confidence 6789999998 444332 2110 112356788898 888877777777789998 44 333222
Q ss_pred eeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEE
Q 021036 235 VGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVA 314 (318)
Q Consensus 235 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~ 314 (318)
. .+..+...+.+++++++|+++++...++.|..||. ++....+..... ...+.+++++++|.+.+
T Consensus 223 ~-~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~-------------~~~~~~i~~~~~g~l~v 287 (300)
T 2qc5_A 223 Y-DIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTE-------------NAEPHGITFGKDGSVWF 287 (300)
T ss_dssp E-ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCST-------------TCCCCCEEECTTSCEEE
T ss_pred E-ECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCcc-------------CCccceeEeCCCCCEEE
Confidence 1 22234566889999999997777767789999998 444443322211 12568899999988765
Q ss_pred EE
Q 021036 315 MV 316 (318)
Q Consensus 315 ~~ 316 (318)
+.
T Consensus 288 ~~ 289 (300)
T 2qc5_A 288 AL 289 (300)
T ss_dssp EC
T ss_pred Ec
Confidence 53
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.08 E-value=9.4e-09 Score=86.78 Aligned_cols=207 Identities=6% Similarity=-0.017 Sum_probs=126.6
Q ss_pred CCcccccccCCCCCccEEEEecC-----CCcEEEEEccCCccccccccccCCceeEEeeec------cccccEEEEEeee
Q 021036 70 SKKYPVPQNGSSNWFSILAVGGR-----SGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQ------AHNSWITSISLAV 138 (318)
Q Consensus 70 ~~~~~v~~~~~s~~~~~l~~g~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~------~h~~~v~~~~~~p 138 (318)
.|...+.+++++++++++++-.. ++.|.+||..+++ .++.+. .+...+..+++
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~--------------~~~~~~~~~~~~~~~~~~~~v~v-- 127 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQ--------------LSRVIYLPPPITLSNSFVNDLAV-- 127 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTE--------------EEEEEECCTTTSCTTCCCCEEEE--
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCe--------------EEEEEECChhhcccccccceEEE--
Confidence 34556677777777787776543 5789999998764 222222 12345688999
Q ss_pred ecCCCCC-CCcEEEEEe---CCCcEEEEECCCcceeeeeccccc------ccccceeeee---e------cccceeEEEE
Q 021036 139 LSSDSSN-PQVLLVTGS---SDGSVRIWDGYIQELQKSAEAHCV------PFSLLKEVVT---V------NTVPISVLSL 199 (318)
Q Consensus 139 ~~~~~~~-~~~~l~s~~---~d~~v~iwd~~~~~~~~~~~~~~~------~~~~~~~~~~---~------~~~~v~~l~~ 199 (318)
.+ ++..+++.. .++.|.+||+.+++....+..+.. .+........ . -...+..|++
T Consensus 128 -----d~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~ 202 (343)
T 2qe8_A 128 -----DLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVL 202 (343)
T ss_dssp -----ETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEE
T ss_pred -----ecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEe
Confidence 55 455556655 678999999988876655543211 0000000000 0 0124678999
Q ss_pred eeccCCCCceEEEEEeCCCcEEEeeeccC---CCee---eEee--eeecccCceeEEEEcCCCCEEEEecCCCcEEEEEe
Q 021036 200 ILPVQSPRLMLLAVGKGSGSFDLWKCDIS---CNKF---DKVG--SYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIF 271 (318)
Q Consensus 200 ~~~~~~~~~~~l~~~~~dg~i~vw~~~~~---~~~~---~~~~--~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~ 271 (318)
+ |+++.|+.+..++. ++|.++.. .... +... ...++......++++++|.++++...++.|.+||.
T Consensus 203 s-----~dg~~ly~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~ 276 (343)
T 2qe8_A 203 D-----AENEWLYLSPMHST-SMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITS 276 (343)
T ss_dssp C-----TTSCEEEEEESSCS-EEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEET
T ss_pred c-----cCCCEEEEEeCCCC-eEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEEC
Confidence 9 99998888876664 55544421 1100 0000 11234445678999999999999999999999998
Q ss_pred cCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 272 HGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
.+++...+...+ +...+.+++|.++++++++.
T Consensus 277 ~~G~~~~~~~~~-------------~~~~p~~va~~~~g~l~v~~ 308 (343)
T 2qe8_A 277 ADRAYKLLVTDE-------------KLSWTDSFNFGSDGYLYFDC 308 (343)
T ss_dssp TTTEEEEEEECG-------------GGSCEEEEEECTTSCEEEEE
T ss_pred CCCCEEEEEECC-------------ceecCCeeEECCCCcEEEEe
Confidence 555544333222 12357899999998876664
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.6e-08 Score=84.36 Aligned_cols=241 Identities=14% Similarity=0.043 Sum_probs=137.4
Q ss_pred ccceEEeeCCCceeEeecCCCCCCCceec----chhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecC
Q 021036 17 THPTVAASKSKGNSITKIPSNCCLPLITA----DQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGR 92 (318)
Q Consensus 17 ~~~~~t~s~d~~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~ 92 (318)
....+++..+..|.++|+.+....+.+.. .....+.. .++ |. .+.++++| +++++..
T Consensus 96 ~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g------~s~-Ph-----------~~~~~pdG-i~Vs~~g 156 (462)
T 2ece_A 96 RFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSG------YSR-LH-----------TVHCGPDA-IYISALG 156 (462)
T ss_dssp CEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHC------EEE-EE-----------EEEECSSC-EEEEEEE
T ss_pred CEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccC------CCc-cc-----------ceeECCCe-EEEEcCC
Confidence 44567788899999999976533232221 11100000 111 11 12333445 5555444
Q ss_pred C------CcEEEEEccCCccccccccccCCceeEEeeecc--cc-ccEEEEEeeeecCCCCCCCcEEEEEe---------
Q 021036 93 S------GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQA--HN-SWITSISLAVLSSDSSNPQVLLVTGS--------- 154 (318)
Q Consensus 93 d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~-~~v~~~~~~p~~~~~~~~~~~l~s~~--------- 154 (318)
+ |.|.+.|.++.+ .+..+.. .. ..-+.+.| +++++.++++.
T Consensus 157 ~~~g~~~g~v~vlD~~T~~--------------v~~~~~~~~~~~~~~Yd~~~-------~p~~~~mvsS~wg~p~~~~~ 215 (462)
T 2ece_A 157 NEEGEGPGGILMLDHYSFE--------------PLGKWEIDRGDQYLAYDFWW-------NLPNEVLVSSEWAVPNTIED 215 (462)
T ss_dssp ETTSCSCCEEEEECTTTCC--------------EEEECCSBCTTCCCCCCEEE-------ETTTTEEEECBCCCHHHHTT
T ss_pred CcCCCCCCeEEEEECCCCe--------------EEEEEccCCCCccccceEEE-------CCCCCEEEEccCcCcccccc
Confidence 4 789999999854 4444432 11 22346788 78888888884
Q ss_pred ----------CCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEE--eeccCCCCceEEEEEe------C
Q 021036 155 ----------SDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSL--ILPVQSPRLMLLAVGK------G 216 (318)
Q Consensus 155 ----------~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~~~~~~~~l~~~~------~ 216 (318)
.+.+|.+||+.+++...++..... ......+.| + |+++++++++ .
T Consensus 216 g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~------------g~~P~~i~f~~~-----Pdg~~aYV~~e~~~~~L 278 (462)
T 2ece_A 216 GLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEE------------NRMALELRPLHD-----PTKLMGFINMVVSLKDL 278 (462)
T ss_dssp CCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTT------------EEEEEEEEECSS-----TTCCEEEEEEEEETTTC
T ss_pred ccchhhhhhccCCEEEEEECCCCcEeeEEecCCC------------CCccceeEeeEC-----CCCCEEEEEEeeeccCC
Confidence 468999999998877776654310 112345555 6 8998888777 4
Q ss_pred CCcEEEeeeccCCCeeeEeeee--ecc----------------cCceeEEEEcCCCCEEEEec-CCCcEEEEEecCC-ce
Q 021036 217 SGSFDLWKCDISCNKFDKVGSY--NAH----------------DQVVTGLAWAFDGCCLYSCS-QDNFVRSWIFHGN-SL 276 (318)
Q Consensus 217 dg~i~vw~~~~~~~~~~~~~~~--~~h----------------~~~v~~~~~~~~~~~l~s~~-~d~~v~iwd~~~~-~~ 276 (318)
+++|.+|..+. ++++....+ ... ......+.++|||++|.++. ..+.|.+||+... ..
T Consensus 279 ss~V~v~~~d~--g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~ 356 (462)
T 2ece_A 279 SSSIWLWFYED--GKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKP 356 (462)
T ss_dssp CEEEEEEEEET--TEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSC
T ss_pred CceEEEEEecC--CceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCc
Confidence 66888876553 554443332 110 23468899999999876654 4689999998632 21
Q ss_pred --e-eeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 277 --S-QVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 277 --~-~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
. .+..........-. ....-.+.-..++++|||++|.++.
T Consensus 357 ~lv~~I~tGG~~~~~~~~-~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 357 VLTGKVKLGGIFHRADHP-AGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EEEEEEECBTTTTCBCCT-TSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEEEEEeCCeecccccc-ccccCCCCCCEEEEcCCCCEEEEEc
Confidence 1 12111000000000 0000011247899999999988764
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.9e-08 Score=86.63 Aligned_cols=239 Identities=10% Similarity=-0.061 Sum_probs=140.6
Q ss_pred cCcCCCCCccceEEeeC-C----CceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCC
Q 021036 9 SNKMKDSNTHPTVAASK-S----KGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNW 83 (318)
Q Consensus 9 ~~~~~~~~~~~~~t~s~-d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~ 83 (318)
-.++.+.+.+.++.... + +.|.+.|..+++.+..+.....+ .++++|++
T Consensus 76 ~~~~p~~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P---------gia~SpDg----------------- 129 (426)
T 3c75_H 76 ILEAPAPDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP---------HPVAAEDG----------------- 129 (426)
T ss_dssp BCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC---------EEEECTTS-----------------
T ss_pred ccccCCCCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC---------ceEECCCC-----------------
Confidence 34566666666655544 3 68999999999887776643211 27777777
Q ss_pred ccEEEEec----------CCCcEEEEEccCCccccccccccCCceeEEeeeccc-------cccEEEEEeeeecCCCCCC
Q 021036 84 FSILAVGG----------RSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAH-------NSWITSISLAVLSSDSSNP 146 (318)
Q Consensus 84 ~~~l~~g~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h-------~~~v~~~~~~p~~~~~~~~ 146 (318)
++|+++. .++.|.++|..+.+ .+..+.-- ...-..+.+ +++
T Consensus 130 -k~lyVan~~~~~~~~G~~~~~VsviD~~t~~--------------vv~~I~v~g~~r~~~g~~P~~~~~-------spD 187 (426)
T 3c75_H 130 -SFFAQASTVFERIARGKRTDYVEVFDPVTFL--------------PIADIELPDAPRFLVGTYQWMNAL-------TPD 187 (426)
T ss_dssp -SCEEEEEEEEEETTEEEEEEEEEEECTTTCC--------------EEEEEEETTCCCCCBSCCGGGSEE-------CTT
T ss_pred -CEEEEEeccccccccCCCCCEEEEEECCCCc--------------EEEEEECCCccccccCCCcceEEE-------cCC
Confidence 7766664 46789999999855 33333210 122356788 899
Q ss_pred CcEEEEEeC--CCcEEEEECCCcceeeeeccccc----ccc--------ccee--eeeeccccee---------------
Q 021036 147 QVLLVTGSS--DGSVRIWDGYIQELQKSAEAHCV----PFS--------LLKE--VVTVNTVPIS--------------- 195 (318)
Q Consensus 147 ~~~l~s~~~--d~~v~iwd~~~~~~~~~~~~~~~----~~~--------~~~~--~~~~~~~~v~--------------- 195 (318)
|++|+++.. ++.|.+.|+.+++.+..+..... +.. .... +.......+.
T Consensus 188 Gk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~ 267 (426)
T 3c75_H 188 NKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLI 267 (426)
T ss_dssp SSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBC
T ss_pred CCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCcee
Confidence 999998874 57899999999988877654221 000 0000 0000001111
Q ss_pred -EEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeec----------ccCceeEEEEcCCCCEEEEecC--
Q 021036 196 -VLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNA----------HDQVVTGLAWAFDGCCLYSCSQ-- 262 (318)
Q Consensus 196 -~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~----------h~~~v~~~~~~~~~~~l~s~~~-- 262 (318)
.+.+. +++..++..+..+.+.+.| ........+..+.- .......++++|+++.++....
T Consensus 268 ~~~~~~-----~dg~~~~~~s~~g~V~ViD--~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~ 340 (426)
T 3c75_H 268 NHPAFS-----LRSGRLVWPTYTGKIFQAD--LTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQR 340 (426)
T ss_dssp SCCEEC-----TTTCEEEEEBTTSEEEEEE--ECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEEC
T ss_pred eEeeec-----CCCCEEEEEeCCCcEEEEe--ccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccc
Confidence 11223 5555555556677777774 33332112111110 1112234789999886665532
Q ss_pred --------CCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCc-EEEEEe
Q 021036 263 --------DNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNL-VVAMVQ 317 (318)
Q Consensus 263 --------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~l~~~~ 317 (318)
++.|.++|+.+.+......-+ ....+++|+|||+ .+++..
T Consensus 341 ~~gthk~~s~~VsVID~~T~kvv~~I~vg---------------~~P~gia~spDg~~~lyv~n 389 (426)
T 3c75_H 341 DEWKHKAASRFVVVLNAETGERINKIELG---------------HEIDSINVSQDAEPLLYALS 389 (426)
T ss_dssp CTTCTTSCEEEEEEEETTTCCEEEEEEEE---------------EEECEEEECCSSSCEEEEEE
T ss_pred ccccccCCCCEEEEEECCCCeEEEEEECC---------------CCcCeEEEccCCCEEEEEEc
Confidence 357999999987765432211 1468999999998 777654
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.06 E-value=1.2e-07 Score=78.14 Aligned_cols=187 Identities=16% Similarity=0.099 Sum_probs=114.2
Q ss_pred eeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeee
Q 021036 59 AVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAV 138 (318)
Q Consensus 59 ~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p 138 (318)
...|+|.. +.++++...++.|..|+..+++. ..+ .....+.++.+
T Consensus 17 gp~w~~~~-----------------~~l~~~d~~~~~i~~~d~~~~~~---------------~~~-~~~~~~~~i~~-- 61 (297)
T 3g4e_A 17 SPVWEEVS-----------------NSLLFVDIPAKKVCRWDSFTKQV---------------QRV-TMDAPVSSVAL-- 61 (297)
T ss_dssp EEEEETTT-----------------TEEEEEETTTTEEEEEETTTCCE---------------EEE-ECSSCEEEEEE--
T ss_pred CCeEECCC-----------------CEEEEEECCCCEEEEEECCCCcE---------------EEE-eCCCceEEEEE--
Confidence 47888865 47788888899999999987541 122 23467899999
Q ss_pred ecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCC-
Q 021036 139 LSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGS- 217 (318)
Q Consensus 139 ~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~d- 217 (318)
.++|+++++ . +..|.+||..+++.......... .....++.++++ |+|+++++....
T Consensus 62 -----~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~----------~~~~~~~di~~d-----~dG~l~~~~~~~~ 119 (297)
T 3g4e_A 62 -----RQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDND----------KKNNRFNDGKVD-----PAGRYFAGTMAEE 119 (297)
T ss_dssp -----BTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTT----------CSSEEEEEEEEC-----TTSCEEEEEEECC
T ss_pred -----CCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCC----------CCCCCCCCEEEC-----CCCCEEEecCCcc
Confidence 888885554 3 56899999987654332211110 012246789998 899976655322
Q ss_pred --------CcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEE-EEecCCCcEEEEEec--CCceeeeecCCCCC
Q 021036 218 --------GSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCL-YSCSQDNFVRSWIFH--GNSLSQVSIPTNTP 286 (318)
Q Consensus 218 --------g~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~d~~v~iwd~~--~~~~~~~~~~~~~~ 286 (318)
....+|.++... +... +..+......++|+|+++.| ++.+.++.|.+|++. ++.+......
T Consensus 120 ~~~~~~~~~~~~l~~~d~~g-~~~~---~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~---- 191 (297)
T 3g4e_A 120 TAPAVLERHQGALYSLFPDH-HVKK---YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSV---- 191 (297)
T ss_dssp SBTTBCCTTCEEEEEECTTS-CEEE---EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEE----
T ss_pred cccccccCCCcEEEEEECCC-CEEE---EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEE----
Confidence 334666556543 2212 22333456789999999865 555667899999983 4433210000
Q ss_pred CccccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 287 GLQSCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 287 ~~~~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
.++..+.....+++++++|.+.++
T Consensus 192 -----~~~~~~~~~p~g~~~d~~G~lwva 215 (297)
T 3g4e_A 192 -----YKLEKEEQIPDGMCIDAEGKLWVA 215 (297)
T ss_dssp -----EECCGGGCEEEEEEEBTTSCEEEE
T ss_pred -----EECCCCCCCCCeeEECCCCCEEEE
Confidence 001111235567778877765554
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=4.3e-08 Score=90.68 Aligned_cols=189 Identities=11% Similarity=0.031 Sum_probs=110.2
Q ss_pred eCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCC---------
Q 021036 24 SKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSG--------- 94 (318)
Q Consensus 24 s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg--------- 94 (318)
+...+|++||+.+++.+.. .... .. ...++|+ ++ +.|+.++.+.
T Consensus 152 ~~~~~i~v~dl~tg~~~~~-~~~~----~k---~~~~~Ws-Dg------------------~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 152 SDWREIHLMDVESKQPLET-PLKD----VK---FSGISWL-GN------------------EGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp CCEEEEEEEETTTCSEEEE-EEEE----EE---SCCCEEE-TT------------------TEEEEEESSCCC-------
T ss_pred CceEEEEEEECCCCCCCcc-ccCC----ce---eccEEEe-CC------------------CEEEEEEecCccccccccc
Confidence 3346789999999875432 1100 00 1237888 77 7777776663
Q ss_pred ----cEEEEEccCCccccccccccCCceeEEeeecc-ccccEEEEEeeeecCCCCCCCcEEEEEeC----CCcEEEEECC
Q 021036 95 ----KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQA-HNSWITSISLAVLSSDSSNPQVLLVTGSS----DGSVRIWDGY 165 (318)
Q Consensus 95 ----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~~~~~~~~~~l~s~~~----d~~v~iwd~~ 165 (318)
.|++|++.++... ...+..... |...+..+.| +++|++|+.... +..|+++|+.
T Consensus 205 ~~~~~v~~~~lgt~~~~----------~~~v~~~~~~~~~~~~~~~~-------SpDg~~l~~~~~~~~~~~~i~~~d~~ 267 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQED----------DRLVFGAIPAQHHRYVGATV-------TEDDRFLLISAANSTSGNRLYVKDLS 267 (693)
T ss_dssp CCCCEEEEEETTSCGGG----------CEEEESCSGGGCCSEEEEEE-------CTTSCEEEEEEESSSSCCEEEEEETT
T ss_pred CCCcEEEEEECCCCccc----------ceEEEecCCCCCeEEEEEEE-------cCCCCEEEEEEccCCCCcEEEEEECC
Confidence 3999998875421 123333344 5556788999 899988765432 3589999998
Q ss_pred Ccc-eeeeecccccccccceeeeeecccceeEEEEeeccCCCC-ceEEEEEeCC---CcEEEeeeccCCCeeeEeeeeec
Q 021036 166 IQE-LQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPR-LMLLAVGKGS---GSFDLWKCDISCNKFDKVGSYNA 240 (318)
Q Consensus 166 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~-~~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~ 240 (318)
++. ....+..+. ...... ++ ++ +.+++.+..+ +.|..+ +..+........+..
T Consensus 268 ~~~~~~~~l~~~~--------------~~~~~~-~~-----~~g~~l~~~t~~~~~~~~l~~~--d~~~~~~~~~~~l~~ 325 (693)
T 3iuj_A 268 QENAPLLTVQGDL--------------DADVSL-VD-----NKGSTLYLLTNRDAPNRRLVTV--DAANPGPAHWRDLIP 325 (693)
T ss_dssp STTCCCEEEECSS--------------SSCEEE-EE-----EETTEEEEEECTTCTTCEEEEE--ETTSCCGGGCEEEEC
T ss_pred CCCCceEEEeCCC--------------CceEEE-Ee-----ccCCEEEEEECCCCCCCEEEEE--eCCCCCccccEEEec
Confidence 763 223332221 122222 44 44 4455555543 456666 555543212234555
Q ss_pred ccCceeEEEEcCCCCEEEEecC-CC--cEEEEEecCCceeeee
Q 021036 241 HDQVVTGLAWAFDGCCLYSCSQ-DN--FVRSWIFHGNSLSQVS 280 (318)
Q Consensus 241 h~~~v~~~~~~~~~~~l~s~~~-d~--~v~iwd~~~~~~~~~~ 280 (318)
|...+. .|+++++.|+.... ++ .|++||+.++....+.
T Consensus 326 ~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~ 366 (693)
T 3iuj_A 326 ERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRVREVA 366 (693)
T ss_dssp CCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEEEEEC
T ss_pred CCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCeeEEee
Confidence 665554 89999887776654 43 6889988766555443
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.03 E-value=1e-07 Score=78.92 Aligned_cols=176 Identities=12% Similarity=0.070 Sum_probs=104.5
Q ss_pred CCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccc-cccEEEEEeeeecCCCCCCCcEEEE----Ee
Q 021036 80 SSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAH-NSWITSISLAVLSSDSSNPQVLLVT----GS 154 (318)
Q Consensus 80 ~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~p~~~~~~~~~~~l~s----~~ 154 (318)
++++|+++++...++.|.+|+.+ ++.. .......+. ...++.+.+ .++|+++++ |.
T Consensus 93 ~d~dG~l~v~~~~~~~v~~~~~~-g~~~-----------~~~~~~~~~~~~~~~~i~~-------d~dG~l~~td~~~g~ 153 (305)
T 3dr2_A 93 VDAQQRLVHCEHGRRAITRSDAD-GQAH-----------LLVGRYAGKRLNSPNDLIV-------ARDGAIWFTDPPFGL 153 (305)
T ss_dssp ECTTSCEEEEETTTTEEEEECTT-SCEE-----------EEECEETTEECSCCCCEEE-------CTTSCEEEECCSGGG
T ss_pred ECCCCCEEEEECCCCEEEEECCC-CCEE-----------EEEeccCCCccCCCCCEEE-------CCCCCEEEeCcCCCc
Confidence 33334877776667889999876 4311 111111111 234678999 889988886 33
Q ss_pred C-------------CCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCC----
Q 021036 155 S-------------DGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGS---- 217 (318)
Q Consensus 155 ~-------------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~d---- 217 (318)
. .+.|..+|..+++..... . ....+.++|+ |+++.|+.+...
T Consensus 154 ~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~--------------~~~p~gl~~s-----pdg~~lyv~~~~~~~~ 212 (305)
T 3dr2_A 154 RKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--D--------------LDHPNGLAFS-----PDEQTLYVSQTPEQGH 212 (305)
T ss_dssp SCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--E--------------ESSEEEEEEC-----TTSSEEEEEECCC---
T ss_pred cccccccccccccCCCeEEEEcCCCCcEEEEe--c--------------CCCCcceEEc-----CCCCEEEEEecCCcCC
Confidence 2 245777776555533221 1 1145678999 999987777655
Q ss_pred --CcEEEeeeccCCCeeeEeeee-ecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccC
Q 021036 218 --GSFDLWKCDISCNKFDKVGSY-NAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDL 294 (318)
Q Consensus 218 --g~i~vw~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 294 (318)
+.|.+|+++. ........+ .........++++++|++.+ +..+ .|.+|+..+.....+....
T Consensus 213 ~~~~i~~~~~~~--~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv-~~~~-gv~~~~~~g~~~~~~~~~~----------- 277 (305)
T 3dr2_A 213 GSVEITAFAWRD--GALHDRRHFASVPDGLPDGFCVDRGGWLWS-SSGT-GVCVFDSDGQLLGHIPTPG----------- 277 (305)
T ss_dssp CCCEEEEEEEET--TEEEEEEEEECCSSSCCCSEEECTTSCEEE-CCSS-EEEEECTTSCEEEEEECSS-----------
T ss_pred CCCEEEEEEecC--CCccCCeEEEECCCCCCCeEEECCCCCEEE-ecCC-cEEEECCCCCEEEEEECCC-----------
Confidence 6888886542 211111111 11234456789999998544 4444 4999998655444443222
Q ss_pred CCcceeeeEEEEcCCCcEEEE
Q 021036 295 PDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 295 ~~h~~~v~~v~~sp~~~~l~~ 315 (318)
.+.+++|+|+++.|..
T Consensus 278 -----~~~~~~f~~d~~~L~i 293 (305)
T 3dr2_A 278 -----TASNCTFDQAQQRLFI 293 (305)
T ss_dssp -----CCCEEEECTTSCEEEE
T ss_pred -----ceeEEEEeCCCCEEEE
Confidence 3578999998875554
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.3e-10 Score=99.17 Aligned_cols=185 Identities=10% Similarity=-0.015 Sum_probs=95.7
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCc
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGK 95 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~ 95 (318)
....+++++.|+.+..||..+++.+-.+.. +. +.+..+..++.++++++.||.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~------~~---------------------~~s~p~~~~g~~~v~~s~dg~ 60 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE------DP---------------------VLQVPTHVEEPAFLPDPNDGS 60 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC------CC---------------------SCCCC-----CCEEECTTTCC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC------CC---------------------ceecceEcCCCEEEEeCCCCE
Confidence 346688999999999999999986544332 11 111111223468888899999
Q ss_pred EEEEEccCCccccccccccCCceeEEeeeccccc-cEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeec
Q 021036 96 VSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNS-WITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAE 174 (318)
Q Consensus 96 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 174 (318)
|+.||.++++.. ..+..+.. .+. -.|. ...+..+++++.|+.|+.||..+|+....+.
T Consensus 61 l~a~d~~tG~~~--------------w~~~~~~~~~~~---~sp~----~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~ 119 (369)
T 2hz6_A 61 LYTLGSKNNEGL--------------TKLPFTIPELVQ---ASPC----RSSDGILYMGKKQDIWYVIDLLTGEKQQTLS 119 (369)
T ss_dssp EEEC-----CCS--------------EECSCCHHHHHT---TCSC----C-----CCCCEEEEEEEEECCC---------
T ss_pred EEEEECCCCcee--------------eeeeccCccccc---cCce----EecCCEEEEEeCCCEEEEEECCCCcEEEEec
Confidence 999999886532 22222111 110 0010 1134567888899999999999998877655
Q ss_pred ccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCC
Q 021036 175 AHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDG 254 (318)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 254 (318)
.+. ...++ |++..+++++.++.|+.| |.++++ .+.++..+. .....++++.
T Consensus 120 ~~~------------------~~~~~-----p~~~~v~~~~~dg~v~a~--d~~tG~--~~W~~~~~~--~~~~~~~~~~ 170 (369)
T 2hz6_A 120 SAF------------------ADSLS-----PSTSLLYLGRTEYTITMY--DTKTRE--LRWNATYFD--YAASLPEDDV 170 (369)
T ss_dssp ------------------------------------EEEEEEEEEEECC--CSSSSS--CCCEEEEEE--ECCBCCCCCT
T ss_pred CCC------------------ccccc-----ccCCEEEEEecCCEEEEE--ECCCCC--EEEeEeccc--ccCccccCCc
Confidence 322 12344 678889999999999999 666665 233332111 1223334432
Q ss_pred ---CEEEEecCCCcEEEEEecCCcee
Q 021036 255 ---CCLYSCSQDNFVRSWIFHGNSLS 277 (318)
Q Consensus 255 ---~~l~s~~~d~~v~iwd~~~~~~~ 277 (318)
..+++++.||.|+.||..+++..
T Consensus 171 ~~~~~v~~~~~dg~v~a~d~~tG~~~ 196 (369)
T 2hz6_A 171 DYKMSHFVSNGDGLVVTVDSESGDVL 196 (369)
T ss_dssp TCCCCEEEEETSCEEEEECTTTCCEE
T ss_pred cccceEEEECCCCEEEEEECCCCcEE
Confidence 45777888999999999887653
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.99 E-value=9.8e-08 Score=82.47 Aligned_cols=202 Identities=10% Similarity=-0.023 Sum_probs=119.1
Q ss_pred cccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEE
Q 021036 72 KYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLV 151 (318)
Q Consensus 72 ~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~ 151 (318)
......++++++++++++...++.|++||.+++.. ...... ..... ++| +++++.|+
T Consensus 130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~--------------~~~~~~-~~~~~-ia~-------~~~g~~l~ 186 (409)
T 3hrp_A 130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKV--------------TTVHPG-FKGGK-PAV-------TKDKQRVY 186 (409)
T ss_dssp CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEE--------------EEEEET-CCBCB-CEE-------CTTSSEEE
T ss_pred cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEE--------------EEeecc-CCCCc-eeE-------ecCCCcEE
Confidence 34566777888889888888889999999987542 222222 22233 899 88999888
Q ss_pred EEeCCC--cEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCC
Q 021036 152 TGSSDG--SVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISC 229 (318)
Q Consensus 152 s~~~d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~ 229 (318)
++..++ .|.+++...+.....+.... ......+.+++++ |++..|+.+..++.|+.| +..+
T Consensus 187 ~~d~~~~~~I~~~d~~~~~~~~~~g~~~----------~~~~~~p~~iav~-----p~~g~lyv~d~~~~I~~~--d~~~ 249 (409)
T 3hrp_A 187 SIGWEGTHTVYVYMKASGWAPTRIGQLG----------STFSGKIGAVALD-----ETEEWLYFVDSNKNFGRF--NVKT 249 (409)
T ss_dssp EEBSSTTCEEEEEEGGGTTCEEEEEECC----------TTSCSCCCBCEEC-----TTSSEEEEECTTCEEEEE--ETTT
T ss_pred EEecCCCceEEEEEcCCCceeEEeeecc----------chhcCCcEEEEEe-----CCCCeEEEEECCCcEEEE--ECCC
Confidence 888766 78888877654433220000 0012356788898 744444447778888888 4444
Q ss_pred CeeeEeee--eecccCce-e-EEEEcCC-CCEEEEecCCCcEEEEEecCCceeeeecCCCCCCcc-ccccCCCcceeeeE
Q 021036 230 NKFDKVGS--YNAHDQVV-T-GLAWAFD-GCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQ-SCTDLPDAFVSCLG 303 (318)
Q Consensus 230 ~~~~~~~~--~~~h~~~v-~-~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~ 303 (318)
.....+.. ..++...- . .++|+|+ +.++++-..++.|+.|+.... ...+.......... + ...........+
T Consensus 250 ~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg-~~~~~~~~~P~g 327 (409)
T 3hrp_A 250 QEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDG-LREEALFAQPNG 327 (409)
T ss_dssp CCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECTTCCSCBCE-EGGGCBCSSEEE
T ss_pred CCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCC-cccccEeCCCeE
Confidence 43222211 11222222 3 8999995 666677777889999987654 33333222110000 0 000011235689
Q ss_pred EEEcCCCcEEEE
Q 021036 304 MAVSPGNLVVAM 315 (318)
Q Consensus 304 v~~sp~~~~l~~ 315 (318)
++++|+|.++++
T Consensus 328 ia~d~dG~lyva 339 (409)
T 3hrp_A 328 MTVDEDGNFYIV 339 (409)
T ss_dssp EEECTTCCEEEE
T ss_pred EEEeCCCCEEEE
Confidence 999999986554
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.99 E-value=1.4e-07 Score=78.16 Aligned_cols=156 Identities=7% Similarity=0.014 Sum_probs=98.0
Q ss_pred ccccCCCCCccEEEEecCC---------------CcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeee
Q 021036 75 VPQNGSSNWFSILAVGGRS---------------GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVL 139 (318)
Q Consensus 75 v~~~~~s~~~~~l~~g~~d---------------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~ 139 (318)
+.++.++++|+++++...+ +.|..|+.. ++ . ..+..+......++|
T Consensus 119 ~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~--------------~-~~~~~~~~~~~~i~~--- 179 (314)
T 1pjx_A 119 CNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ--------------M-IQVDTAFQFPNGIAV--- 179 (314)
T ss_dssp CCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC--------------E-EEEEEEESSEEEEEE---
T ss_pred CcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CC--------------E-EEeccCCCCcceEEE---
Confidence 3445555555887776554 456666554 32 1 112223345678889
Q ss_pred cCCCC----CCCcEEEEE-eCCCcEEEEECC-Ccceee--eecccccccccceeeeeecc-cceeEEEEeeccCCCCceE
Q 021036 140 SSDSS----NPQVLLVTG-SSDGSVRIWDGY-IQELQK--SAEAHCVPFSLLKEVVTVNT-VPISVLSLILPVQSPRLML 210 (318)
Q Consensus 140 ~~~~~----~~~~~l~s~-~~d~~v~iwd~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~v~~l~~~~~~~~~~~~~ 210 (318)
+ ++++.|+.+ ..++.|.+||.. .++... .+.. ...+. ..+..++++ ++|.+
T Consensus 180 ----~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~-----------~~~~~~~~p~~i~~d-----~~G~l 239 (314)
T 1pjx_A 180 ----RHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGH-----------IPGTHEGGADGMDFD-----EDNNL 239 (314)
T ss_dssp ----EECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEE-----------CCCCSSCEEEEEEEB-----TTCCE
T ss_pred ----ecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEE-----------CCCCCCCCCCceEEC-----CCCCE
Confidence 7 888655444 567899999976 333211 1100 00111 246778898 89998
Q ss_pred EEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCC-EEEEecCCCcEEEEEecC
Q 021036 211 LAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGC-CLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 211 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~ 273 (318)
+++...++.|.+| +..+++ .+..+..+...+.+++|+|+|+ ++++...++.|..|++..
T Consensus 240 ~v~~~~~~~i~~~--d~~~g~--~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 240 LVANWGSSHIEVF--GPDGGQ--PKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEEETTTEEEEE--CTTCBS--CSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEEcCCCEEEEE--cCCCCc--EeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 8888788899999 555343 3334445557789999999999 445556678999999865
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=98.98 E-value=8.8e-08 Score=89.32 Aligned_cols=151 Identities=10% Similarity=-0.073 Sum_probs=91.5
Q ss_pred CCCccEEEEecCC-----CcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeC
Q 021036 81 SNWFSILAVGGRS-----GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSS 155 (318)
Q Consensus 81 s~~~~~l~~g~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~ 155 (318)
||+|++||.+..+ ..|++||+++++.. .. ..+...+..++| +++ +.|+.++.
T Consensus 171 SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~--------------~~-~~~~~~~~~~~w-------spD-~~l~~~~~ 227 (741)
T 1yr2_A 171 SDDGRLLAYSVQDGGSDWRTVKFVGVADGKPL--------------AD-ELKWVKFSGLAW-------LGN-DALLYSRF 227 (741)
T ss_dssp CTTSSEEEEEEEETTCSEEEEEEEETTTCCEE--------------EE-EEEEEESCCCEE-------STT-SEEEEEEC
T ss_pred CCCCCEEEEEEcCCCCceEEEEEEECCCCCCC--------------Cc-cCCCceeccEEE-------ECC-CEEEEEEe
Confidence 3333888776543 35999999987632 11 111222357899 888 88888877
Q ss_pred CCc--------------EEEEECCCccee--eeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCC-
Q 021036 156 DGS--------------VRIWDGYIQELQ--KSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSG- 218 (318)
Q Consensus 156 d~~--------------v~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg- 218 (318)
|+. |++|++.++... ..+.... +...+..+.|+ |+|++|+..+.++
T Consensus 228 ~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~------------~~~~~~~~~~S-----pDG~~l~~~~~~~~ 290 (741)
T 1yr2_A 228 AEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPE------------LPKRGHGASVS-----SDGRWVVITSSEGT 290 (741)
T ss_dssp CCC--------CCCCCEEEEEETTSCGGGCEEEECCTT------------CTTCEEEEEEC-----TTSCEEEEEEECTT
T ss_pred cCcccccccccCCCCCEEEEEECCCCchhCEEEeccCC------------CCeEEEEEEEC-----CCCCEEEEEEEccC
Confidence 654 889998766422 1111111 11236788888 9999888777543
Q ss_pred ----cEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecC----CCcEEEEEecCC
Q 021036 219 ----SFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQ----DNFVRSWIFHGN 274 (318)
Q Consensus 219 ----~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~----d~~v~iwd~~~~ 274 (318)
.|++|++ .++.......+..+...+... ++|+|..|+..+. ++.|.+||+.++
T Consensus 291 ~~~~~l~~~d~--~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~ 351 (741)
T 1yr2_A 291 DPVNTVHVARV--TNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGS 351 (741)
T ss_dssp CSCCEEEEEEE--ETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred CCcceEEEEEC--CCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 6888854 343111023344444444444 3488887777665 345999998774
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.8e-07 Score=77.44 Aligned_cols=156 Identities=10% Similarity=0.103 Sum_probs=102.1
Q ss_pred eeeecccccCCCCcccccccCCCCCcc-EEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEee
Q 021036 59 AVAWSPVLRLSSKKYPVPQNGSSNWFS-ILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLA 137 (318)
Q Consensus 59 ~~~w~p~~~~~~~~~~v~~~~~s~~~~-~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 137 (318)
...|+|++ + +++++..++.|..|+.. ++ ...+..+...+..+.+
T Consensus 49 gp~~~~~g------------------~~l~~~d~~~~~i~~~~~~-g~---------------~~~~~~~~~~~~gl~~- 93 (305)
T 3dr2_A 49 GPAWWEAQ------------------RTLVWSDLVGRRVLGWRED-GT---------------VDVLLDATAFTNGNAV- 93 (305)
T ss_dssp EEEEEGGG------------------TEEEEEETTTTEEEEEETT-SC---------------EEEEEESCSCEEEEEE-
T ss_pred CCeEeCCC------------------CEEEEEECCCCEEEEEeCC-CC---------------EEEEeCCCCccceeeE-
Confidence 37788887 6 77888889999999874 32 1234445667899999
Q ss_pred eecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEE----
Q 021036 138 VLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAV---- 213 (318)
Q Consensus 138 p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~---- 213 (318)
.++|+++++...++.|.+|+.. ++......... ......++.++++ ++|.++++
T Consensus 94 ------d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~----------~~~~~~~~~i~~d-----~dG~l~~td~~~ 151 (305)
T 3dr2_A 94 ------DAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYA----------GKRLNSPNDLIVA-----RDGAIWFTDPPF 151 (305)
T ss_dssp ------CTTSCEEEEETTTTEEEEECTT-SCEEEEECEET----------TEECSCCCCEEEC-----TTSCEEEECCSG
T ss_pred ------CCCCCEEEEECCCCEEEEECCC-CCEEEEEeccC----------CCccCCCCCEEEC-----CCCCEEEeCcCC
Confidence 8899877766666889999986 44322111100 0011246778998 89998886
Q ss_pred EeCC-----------CcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCC------CcEEEEEecCCc
Q 021036 214 GKGS-----------GSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQD------NFVRSWIFHGNS 275 (318)
Q Consensus 214 ~~~d-----------g~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d------~~v~iwd~~~~~ 275 (318)
|..+ +.-.||.++..+++...+. .......++|+|+++.|+.+... +.|.+|++..+.
T Consensus 152 g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~----~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~ 226 (305)
T 3dr2_A 152 GLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA----DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA 226 (305)
T ss_dssp GGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE----EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE
T ss_pred CccccccccccccccCCCeEEEEcCCCCcEEEEe----cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC
Confidence 3321 1234444476566543332 33456789999999977766554 789999987643
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=9.8e-07 Score=73.76 Aligned_cols=144 Identities=11% Similarity=0.009 Sum_probs=92.4
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEE
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWD 163 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd 163 (318)
+.++++...++.|..|+.++++. ..+. ....+.++.| .++|+++++. . ..|.+||
T Consensus 61 ~~l~~~d~~~~~i~~~d~~~~~~---------------~~~~-~~~~v~~i~~-------~~dg~l~v~~-~-~gl~~~d 115 (326)
T 2ghs_A 61 GTAWWFNILERELHELHLASGRK---------------TVHA-LPFMGSALAK-------ISDSKQLIAS-D-DGLFLRD 115 (326)
T ss_dssp TEEEEEEGGGTEEEEEETTTTEE---------------EEEE-CSSCEEEEEE-------EETTEEEEEE-T-TEEEEEE
T ss_pred CEEEEEECCCCEEEEEECCCCcE---------------EEEE-CCCcceEEEE-------eCCCeEEEEE-C-CCEEEEE
Confidence 46778888889999999987531 1222 2457899999 7888777754 3 4599999
Q ss_pred CCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCC----CcEEEeeeccCCCeeeEeeeee
Q 021036 164 GYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGS----GSFDLWKCDISCNKFDKVGSYN 239 (318)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~d----g~i~vw~~~~~~~~~~~~~~~~ 239 (318)
..+++.......... .....++.+.++ |+|+++++...+ +...||.++ +++... +.
T Consensus 116 ~~~g~~~~~~~~~~~----------~~~~~~~~i~~d-----~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~---~~ 175 (326)
T 2ghs_A 116 TATGVLTLHAELESD----------LPGNRSNDGRMH-----PSGALWIGTMGRKAETGAGSIYHVA--KGKVTK---LF 175 (326)
T ss_dssp TTTCCEEEEECSSTT----------CTTEEEEEEEEC-----TTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE---EE
T ss_pred CCCCcEEEEeeCCCC----------CCCCCCCCEEEC-----CCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE---ee
Confidence 887764322211000 012257889998 899876655422 234555446 344322 22
Q ss_pred cccCceeEEEEcCCCCEEE-EecCCCcEEEEEec
Q 021036 240 AHDQVVTGLAWAFDGCCLY-SCSQDNFVRSWIFH 272 (318)
Q Consensus 240 ~h~~~v~~~~~~~~~~~l~-s~~~d~~v~iwd~~ 272 (318)
.+......++|+|+++.++ +.+.++.|.+||+.
T Consensus 176 ~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~ 209 (326)
T 2ghs_A 176 ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLD 209 (326)
T ss_dssp EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBC
T ss_pred CCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcc
Confidence 2334567899999998664 44567899999986
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.87 E-value=5.2e-07 Score=76.47 Aligned_cols=218 Identities=8% Similarity=-0.099 Sum_probs=125.0
Q ss_pred CCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecC--CCcEEEEEcc
Q 021036 25 KSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGR--SGKVSLWRIC 102 (318)
Q Consensus 25 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~--dg~i~iw~~~ 102 (318)
.++.|.+||..+.+.+..+....-.....-.....+.++|++ ++++++.. ++.|.++|..
T Consensus 107 ~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDG------------------k~lyVan~~~~~~VsVID~~ 168 (386)
T 3sjl_D 107 RTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDG------------------KTLLFYQFSPAPAVGVVDLE 168 (386)
T ss_dssp EEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTS------------------SEEEEEECSSSCEEEEEETT
T ss_pred CCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCC------------------CEEEEEEcCCCCeEEEEECC
Confidence 467899999999887666653210000000011125566665 88777753 6899999999
Q ss_pred CCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCC-cceeeeecccccccc
Q 021036 103 VPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYI-QELQKSAEAHCVPFS 181 (318)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~~~ 181 (318)
+++ .+.++.-.. . ...+ +...+.+++.+.||++.+.++.. ++...... ..+.
T Consensus 169 t~~--------------vv~tI~v~g--~-~~~~-------P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~---~~~~ 221 (386)
T 3sjl_D 169 GKA--------------FKRMLDVPD--C-YHIF-------PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT---EVFH 221 (386)
T ss_dssp TTE--------------EEEEEECCS--E-EEEE-------EEETTEEEEEETTSCEEEEECCSSSCCEEEEC---CCCS
T ss_pred CCc--------------EEEEEECCC--c-ceee-------cCCCceeEEECCCCCEEEEECCCCCeEEEeec---ceec
Confidence 854 444443211 1 2234 34456777888999999999876 55422111 1110
Q ss_pred cceeeeeeccccee-EEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeee---------c-ccCceeEEEE
Q 021036 182 LLKEVVTVNTVPIS-VLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYN---------A-HDQVVTGLAW 250 (318)
Q Consensus 182 ~~~~~~~~~~~~v~-~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~---------~-h~~~v~~~~~ 250 (318)
....++. ...|. +++|++++ .+.+|.|++.| ..+.....+..+. + .......+++
T Consensus 222 -------~~~~~~~~~~~~~----~~dG~~~~-vs~~g~V~v~d--~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~ 287 (386)
T 3sjl_D 222 -------PEDEFLINHPAYS----QKAGRLVW-PTYTGKIHQID--LSSGDAKFLPAVEALTEAERADGWRPGGWQQVAY 287 (386)
T ss_dssp -------CTTSCBCSCCEEE----TTTTEEEE-EBTTSEEEEEE--CTTSSCEECCCEESSCHHHHHTTEEECSSSCEEE
T ss_pred -------cccccccccceeE----cCCCcEEE-EeCCCEEEEEE--CCCCcceeecceeccccccccccccCCCcceeeE
Confidence 0111111 22443 26786665 44489999984 4443322232221 0 1233445788
Q ss_pred cCCCCEEEEecC----------CCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCc-EEEEE
Q 021036 251 AFDGCCLYSCSQ----------DNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNL-VVAMV 316 (318)
Q Consensus 251 ~~~~~~l~s~~~----------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~l~~~ 316 (318)
+++++.++.... ...|.++|+.+++......-. ..+++++++||++ +|.+.
T Consensus 288 ~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg---------------~~~~~lavs~D~~~~ly~t 349 (386)
T 3sjl_D 288 HRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG---------------HEIDSINVSQDEKPLLYAL 349 (386)
T ss_dssp ETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE---------------EEECEEEECSSSSCEEEEE
T ss_pred CCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC---------------CCcceEEECCCCCeEEEEE
Confidence 999887766532 257999999987765433222 2678999999996 55553
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.7e-07 Score=86.69 Aligned_cols=197 Identities=12% Similarity=-0.043 Sum_probs=113.5
Q ss_pred eeecccccCCCCcccccccCCCCCccEEEE-----ecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEE
Q 021036 60 VAWSPVLRLSSKKYPVPQNGSSNWFSILAV-----GGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSI 134 (318)
Q Consensus 60 ~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~-----g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 134 (318)
+.++|+..-.+|...+..+.+||+|++||. |+.+..|++||+++++.. .. .+.. .....+
T Consensus 116 vllD~n~la~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~------------~~-~~~~--~k~~~~ 180 (693)
T 3iuj_A 116 VFLDPNTLSPDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPL------------ET-PLKD--VKFSGI 180 (693)
T ss_dssp EEECGGGGSTTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEE------------EE-EEEE--EESCCC
T ss_pred EEEehhhccCCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCC------------cc-ccCC--ceeccE
Confidence 334444433445566777778888898884 334467999999987632 11 1111 113567
Q ss_pred EeeeecCCCCCCCcEEEEEeCCCc-------------EEEEECCCccee--eeecccccccccceeeeeecccceeEEEE
Q 021036 135 SLAVLSSDSSNPQVLLVTGSSDGS-------------VRIWDGYIQELQ--KSAEAHCVPFSLLKEVVTVNTVPISVLSL 199 (318)
Q Consensus 135 ~~~p~~~~~~~~~~~l~s~~~d~~-------------v~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 199 (318)
+| + +++.|+.++.+.. |++|++.++... ..+.... .+...+..+.+
T Consensus 181 ~W-------s-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~-----------~~~~~~~~~~~ 241 (693)
T 3iuj_A 181 SW-------L-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIP-----------AQHHRYVGATV 241 (693)
T ss_dssp EE-------E-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSG-----------GGCCSEEEEEE
T ss_pred EE-------e-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCC-----------CCCeEEEEEEE
Confidence 89 8 8988888887743 999998765431 1111110 01123567788
Q ss_pred eeccCCCCceEEEEEeC----CCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEE-EEecCC---CcEEEEEe
Q 021036 200 ILPVQSPRLMLLAVGKG----SGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCL-YSCSQD---NFVRSWIF 271 (318)
Q Consensus 200 ~~~~~~~~~~~l~~~~~----dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~d---~~v~iwd~ 271 (318)
+ |+|++|+.... +..|++++++.....+ ..+..+....... |+++|..| +....+ +.|..+|+
T Consensus 242 S-----pDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~---~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~ 312 (693)
T 3iuj_A 242 T-----EDDRFLLISAANSTSGNRLYVKDLSQENAPL---LTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDA 312 (693)
T ss_dssp C-----TTSCEEEEEEESSSSCCEEEEEETTSTTCCC---EEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEET
T ss_pred c-----CCCCEEEEEEccCCCCcEEEEEECCCCCCce---EEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeC
Confidence 8 99987765442 2467887443222232 2344455555554 66666644 444433 67889998
Q ss_pred cCCce---eeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 272 HGNSL---SQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 272 ~~~~~---~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
.++.. ..+..+.. .+. .|++++++|+..
T Consensus 313 ~~~~~~~~~~l~~~~~---------------~~~--~~s~~g~~lv~~ 343 (693)
T 3iuj_A 313 ANPGPAHWRDLIPERQ---------------QVL--TVHSGSGYLFAE 343 (693)
T ss_dssp TSCCGGGCEEEECCCS---------------SCE--EEEEETTEEEEE
T ss_pred CCCCccccEEEecCCC---------------CEE--EEEEECCEEEEE
Confidence 77543 33332221 233 788877776643
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.81 E-value=4.1e-06 Score=71.34 Aligned_cols=73 Identities=11% Similarity=0.029 Sum_probs=52.6
Q ss_pred EEEeeccCCCCceEEEEEeC----------CCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCC-EEEEec-CCC
Q 021036 197 LSLILPVQSPRLMLLAVGKG----------SGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGC-CLYSCS-QDN 264 (318)
Q Consensus 197 l~~~~~~~~~~~~~l~~~~~----------dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~-~d~ 264 (318)
+.++ |+++.++++.. ++.|.++ |..+.+ .+.++.. .....++.|+|||+ .++++. .++
T Consensus 272 ~~~s-----~d~~~lyV~~~~~~~~~~~~~~~~V~VI--D~~t~~--vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~ 341 (373)
T 2mad_H 272 VAYL-----KSSDGIYLLTSEQSAWKLHAAAKEVTSV--TGLVGQ--TSSQISL-GHDVDAISVAQDGGPDLYALSAGTE 341 (373)
T ss_pred EEEC-----CCCCEEEEEeccCCcccccCCCCeEEEE--ECCCCE--EEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCC
Confidence 5666 77777777653 2457776 666665 5555543 33578999999999 777776 589
Q ss_pred cEEEEEecCCceeee
Q 021036 265 FVRSWIFHGNSLSQV 279 (318)
Q Consensus 265 ~v~iwd~~~~~~~~~ 279 (318)
.|.++|+.+++....
T Consensus 342 ~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 342 VLHIYDAGAGDQDQS 356 (373)
T ss_pred eEEEEECCCCCEEee
Confidence 999999998776644
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.75 E-value=8.2e-07 Score=74.78 Aligned_cols=163 Identities=7% Similarity=-0.028 Sum_probs=94.9
Q ss_pred cccCCCCCccEEEEec--CCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEE
Q 021036 76 PQNGSSNWFSILAVGG--RSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTG 153 (318)
Q Consensus 76 ~~~~~s~~~~~l~~g~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~ 153 (318)
..++++++|+++++.. .++.++||.+.+++... .+. . ......+...+.++++ .++++++++-
T Consensus 20 ~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~-----~p~-~--~~~~~~~~~~p~gv~~-------d~~g~L~v~D 84 (343)
T 2qe8_A 20 GNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIP-----FPP-Q--SGNAIITFDTVLGIKS-------DGNGIVWMLD 84 (343)
T ss_dssp EEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEE-----SCC-C--CSSCCCCCSCEEEEEE-------CSSSEEEEEE
T ss_pred ceEEECCCCCEEEEeCCCCCCceEEEEECCCCeec-----CCC-c--ccCcccceeEeeEEEE-------cCCCcEEEEc
Confidence 3445555558888853 23436666665432110 000 0 0112235568999999 8888777765
Q ss_pred eC-----CCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCC-ceEEEEEe---CCCcEEEee
Q 021036 154 SS-----DGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPR-LMLLAVGK---GSGSFDLWK 224 (318)
Q Consensus 154 ~~-----d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~-~~~l~~~~---~dg~i~vw~ 224 (318)
.. ++.|.+||+.+++....+...... ..+...+..++++ ++ +..+++.. .++.|.+|+
T Consensus 85 ~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~--------~~~~~~~~~v~vd-----~~~g~~yvtd~~~~~~~~i~v~d 151 (343)
T 2qe8_A 85 NGNQSKSVPKLVAWDTLNNQLSRVIYLPPPI--------TLSNSFVNDLAVD-----LIHNFVYISDPAPDDKAALIRVD 151 (343)
T ss_dssp CHHHHTSCCEEEEEETTTTEEEEEEECCTTT--------SCTTCCCCEEEEE-----TTTTEEEEEECCSGGGCEEEEEE
T ss_pred CCCCcCCCCeEEEEECCCCeEEEEEECChhh--------cccccccceEEEe-----cCCCEEEEEcCccCCCCeEEEEE
Confidence 44 579999999988866655432110 0112346789998 65 45555554 678899995
Q ss_pred eccCCCeeeEeeeeecc-----------------------------cCceeEEEEcCCCCEEEEecCCC-cEEEEE
Q 021036 225 CDISCNKFDKVGSYNAH-----------------------------DQVVTGLAWAFDGCCLYSCSQDN-FVRSWI 270 (318)
Q Consensus 225 ~~~~~~~~~~~~~~~~h-----------------------------~~~v~~~~~~~~~~~l~s~~~d~-~v~iwd 270 (318)
..+++. ...+.+| ...+..++|+|+|+.|+.+..++ .+..++
T Consensus 152 --~~~g~~--~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~ 223 (343)
T 2qe8_A 152 --LQTGLA--ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIK 223 (343)
T ss_dssp --TTTCCE--EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred --CCCCCE--EEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence 444331 1111111 12357899999999888877666 444444
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=2.6e-06 Score=68.37 Aligned_cols=181 Identities=13% Similarity=0.038 Sum_probs=106.6
Q ss_pred cEEEEecC--CCcEEEEEccCCccccccccccCCceeEEeeec-cccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEE
Q 021036 85 SILAVGGR--SGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQ-AHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRI 161 (318)
Q Consensus 85 ~~l~~g~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~i 161 (318)
.++++.+. ++.|++.|..+++. +..+. +.......+++ . ++++.++.-.++.+.+
T Consensus 33 ~Lyvstg~~~~s~v~~iD~~tg~v--------------~~~i~l~~~~fgeGi~~-------~-g~~lyv~t~~~~~v~v 90 (266)
T 2iwa_A 33 TLFESTGLYGRSSVRQVALQTGKV--------------ENIHKMDDSYFGEGLTL-------L-NEKLYQVVWLKNIGFI 90 (266)
T ss_dssp EEEEEECSTTTCEEEEEETTTCCE--------------EEEEECCTTCCEEEEEE-------E-TTEEEEEETTCSEEEE
T ss_pred eEEEECCCCCCCEEEEEECCCCCE--------------EEEEecCCCcceEEEEE-------e-CCEEEEEEecCCEEEE
Confidence 55555543 67999999999763 33332 11122345666 3 2344555556899999
Q ss_pred EECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeec-
Q 021036 162 WDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNA- 240 (318)
Q Consensus 162 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~- 240 (318)
+|..+.+.+..+... . + ....++ ++|+.++++..++.|.++ |..+.+ .+.++.-
T Consensus 91 iD~~t~~v~~~i~~g-~--------------~-~g~glt-----~Dg~~l~vs~gs~~l~vi--D~~t~~--v~~~I~Vg 145 (266)
T 2iwa_A 91 YDRRTLSNIKNFTHQ-M--------------K-DGWGLA-----TDGKILYGSDGTSILYEI--DPHTFK--LIKKHNVK 145 (266)
T ss_dssp EETTTTEEEEEEECC-S--------------S-SCCEEE-----ECSSSEEEECSSSEEEEE--CTTTCC--EEEEEECE
T ss_pred EECCCCcEEEEEECC-C--------------C-CeEEEE-----ECCCEEEEECCCCeEEEE--ECCCCc--EEEEEEEC
Confidence 999999888777533 1 0 112345 567777777778888887 666655 3333332
Q ss_pred -cc---CceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeee-cCCCCCCccccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 241 -HD---QVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVS-IPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 241 -h~---~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
.. ..+..+.|. +|..++....++.|.+.|..+++..... .....+.. ......-....++++|+|+++.+.+
T Consensus 146 ~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~--~~~~~~~~~v~nGIa~~~~~~~lfV 222 (266)
T 2iwa_A 146 YNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKL--IDEGFRDIDVLNGIAWDQENKRIFV 222 (266)
T ss_dssp ETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHH--HHTTCTTCCCEEEEEEETTTTEEEE
T ss_pred CCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCccccc--ccccccccCceEEEEEcCCCCEEEE
Confidence 11 235678888 7766666667889999999988764322 21000000 0000001125689999998765443
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.7e-09 Score=92.26 Aligned_cols=144 Identities=12% Similarity=0.059 Sum_probs=75.8
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEE
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWD 163 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd 163 (318)
+..+++++.||.|+.||..+|+ .+..+.. +.+.+..+ ..++..+++++.|+.|+.||
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~--------------~~W~~~~--~~~~s~p~-------~~~g~~~v~~s~dg~l~a~d 65 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGS--------------IKWTLKE--DPVLQVPT-------HVEEPAFLPDPNDGSLYTLG 65 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCC--------------EEEEEEC--CCSCCCC------------CCEEECTTTCCEEEC-
T ss_pred CCEEEEEcCCCEEEEEECCCCC--------------EEEEecC--CCceecce-------EcCCCEEEEeCCCCEEEEEE
Confidence 5789999999999999999865 3333433 34444333 45666788888999999999
Q ss_pred CCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccC
Q 021036 164 GYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQ 243 (318)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~ 243 (318)
..+|+.+.....+.... ....++ + ..+..+++++.++.++.| |.++++ .+.++..+.
T Consensus 66 ~~tG~~~w~~~~~~~~~--------~~~sp~----~------~~~~~v~~g~~dg~v~a~--D~~tG~--~~w~~~~~~- 122 (369)
T 2hz6_A 66 SKNNEGLTKLPFTIPEL--------VQASPC----R------SSDGILYMGKKQDIWYVI--DLLTGE--KQQTLSSAF- 122 (369)
T ss_dssp ----CCSEECSCCHHHH--------HTTCSC----C-----------CCCCEEEEEEEEE--CCC---------------
T ss_pred CCCCceeeeeeccCccc--------cccCce----E------ecCCEEEEEeCCCEEEEE--ECCCCc--EEEEecCCC-
Confidence 99888766544321100 000011 1 134577888889999999 677776 444444332
Q ss_pred ceeEEEEcCCCCEEEEecCCCcEEEEEecCCce
Q 021036 244 VVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSL 276 (318)
Q Consensus 244 ~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 276 (318)
...++|++..+++++.|+.|+.||.++++.
T Consensus 123 ---~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~ 152 (369)
T 2hz6_A 123 ---ADSLSPSTSLLYLGRTEYTITMYDTKTREL 152 (369)
T ss_dssp -------------EEEEEEEEEEECCCSSSSSC
T ss_pred ---cccccccCCEEEEEecCCEEEEEECCCCCE
Confidence 234567888899999999999999987654
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.67 E-value=9.8e-06 Score=69.50 Aligned_cols=203 Identities=9% Similarity=0.061 Sum_probs=119.1
Q ss_pred ccCCC--CCccE-EEEecCCCcEEEEEccCCccccccccccCCceeEEeeec------c-ccccEEEEEeeeecCCCCCC
Q 021036 77 QNGSS--NWFSI-LAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQ------A-HNSWITSISLAVLSSDSSNP 146 (318)
Q Consensus 77 ~~~~s--~~~~~-l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~------~-h~~~v~~~~~~p~~~~~~~~ 146 (318)
+..++ .++++ ++.|..++.|.++|+.+.... .+..+.+. . -...-..+.. .++
T Consensus 86 ~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~----------p~~~k~ie~~~~~~~~g~s~Ph~~~~-------~pd 148 (462)
T 2ece_A 86 CPNGKPNIERRFLIVPGLRSSRIYIIDTKPNPRE----------PKIIKVIEPEEVKKVSGYSRLHTVHC-------GPD 148 (462)
T ss_dssp STTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTS----------CEEEEEECHHHHHHHHCEEEEEEEEE-------CSS
T ss_pred ccccCCCccCCEEEEccCCCCeEEEEECCCCCCC----------ceeeeeechhhcccccCCCcccceeE-------CCC
Confidence 33445 55555 555778899999999753211 34445442 0 1113344555 788
Q ss_pred CcEEEEEeCC------CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe-----
Q 021036 147 QVLLVTGSSD------GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK----- 215 (318)
Q Consensus 147 ~~~l~s~~~d------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~----- 215 (318)
| +++++..+ +.|.+.|..+++.+..+.....+ ..--+.+-|+ |+++.+++..
T Consensus 149 G-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~-----------~~~~Yd~~~~-----p~~~~mvsS~wg~p~ 211 (462)
T 2ece_A 149 A-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGD-----------QYLAYDFWWN-----LPNEVLVSSEWAVPN 211 (462)
T ss_dssp C-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTT-----------CCCCCCEEEE-----TTTTEEEECBCCCHH
T ss_pred e-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCC-----------ccccceEEEC-----CCCCEEEEccCcCcc
Confidence 8 77776655 78999999999888877643221 1122356677 8999888885
Q ss_pred --------------CCCcEEEeeeccCCCeeeEeeeeecc--cCceeEEEE--cCCCCEEEEec------CCCcEEEEEe
Q 021036 216 --------------GSGSFDLWKCDISCNKFDKVGSYNAH--DQVVTGLAW--AFDGCCLYSCS------QDNFVRSWIF 271 (318)
Q Consensus 216 --------------~dg~i~vw~~~~~~~~~~~~~~~~~h--~~~v~~~~~--~~~~~~l~s~~------~d~~v~iwd~ 271 (318)
...+|.+||++ +++ .+.++... ......+.| +|+++++..++ .+++|.+|..
T Consensus 212 ~~~~g~~~~~~~~~~~d~V~v~D~~--~~k--~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~ 287 (462)
T 2ece_A 212 TIEDGLKLEHLKDRYGNRIHFWDLR--KRK--RIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFY 287 (462)
T ss_dssp HHTTCCCTTTHHHHSCCEEEEEETT--TTE--EEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEE
T ss_pred ccccccchhhhhhccCCEEEEEECC--CCc--EeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEe
Confidence 36889999554 444 44454432 123445555 99999877666 5678988877
Q ss_pred cCCceeeeec---CCC--CCCcc-ccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 272 HGNSLSQVSI---PTN--TPGLQ-SCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 272 ~~~~~~~~~~---~~~--~~~~~-~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
..+....... ... ...+. -...+.+-......+.+||||++|.++.
T Consensus 288 d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSn 339 (462)
T 2ece_A 288 EDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSL 339 (462)
T ss_dssp ETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEE
T ss_pred cCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEe
Confidence 6544322211 110 00000 0000000012467899999999987753
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.65 E-value=2.8e-06 Score=71.96 Aligned_cols=74 Identities=9% Similarity=-0.007 Sum_probs=51.7
Q ss_pred EEEeeccCCCCceEEEEEeC-C--------CcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCC-EEEEec-CCCc
Q 021036 197 LSLILPVQSPRLMLLAVGKG-S--------GSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGC-CLYSCS-QDNF 265 (318)
Q Consensus 197 l~~~~~~~~~~~~~l~~~~~-d--------g~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~-~d~~ 265 (318)
+.++ |+++.++++.. + +.+.++ |..+.+ .+.++.... ....+.|+|||+ .+++.. .++.
T Consensus 269 v~~s-----~dg~~lyV~~~~~~~~~~~~~~~~~Vi--D~~t~~--vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~ 338 (368)
T 1mda_H 269 VAKL-----KNTDGIMILTVEHSRSCLAAAENTSSV--TASVGQ--TSGPISNGH-DSDAIIAAQDGASDNYANSAGTEV 338 (368)
T ss_dssp EEEE-----TTTTEEEEEEEECSSCTTSCEEEEEEE--ESSSCC--EEECCEEEE-EECEEEECCSSSCEEEEEETTTTE
T ss_pred eEEc-----CCCCEEEEEeccccCcccccCCCEEEE--ECCCCe--EEEEEECCC-CcceEEECCCCCEEEEEccCCCCe
Confidence 5677 78877776543 2 345587 666665 455554333 578999999998 556666 5899
Q ss_pred EEEEEecCCceeeee
Q 021036 266 VRSWIFHGNSLSQVS 280 (318)
Q Consensus 266 v~iwd~~~~~~~~~~ 280 (318)
|.++|+.+.+.....
T Consensus 339 VsVID~~t~kvv~~I 353 (368)
T 1mda_H 339 LDIYDAASDQDQSSV 353 (368)
T ss_dssp EEEEESSSCEEEEEC
T ss_pred EEEEECCCCcEEEEE
Confidence 999999998766433
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.63 E-value=8.9e-06 Score=74.84 Aligned_cols=121 Identities=12% Similarity=0.109 Sum_probs=77.3
Q ss_pred cEEEEEeCCCcEEEEECCCcceeeeeccccccccc----ceeeee-------ec----------ccceeEEEEeeccCCC
Q 021036 148 VLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSL----LKEVVT-------VN----------TVPISVLSLILPVQSP 206 (318)
Q Consensus 148 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~----~~~~~~-------~~----------~~~v~~l~~~~~~~~~ 206 (318)
..++.++.+|.+.++|..+|+.+..+.....++.. ...... .. ...-..++++ |
T Consensus 328 ~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~d-----p 402 (677)
T 1kb0_A 328 KVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFN-----P 402 (677)
T ss_dssp EEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEE-----T
T ss_pred eEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEc-----C
Confidence 67999999999999999999988765432211100 000000 00 0001246777 7
Q ss_pred CceEEEEEeCC-------------------------------------------CcEEEeeeccCCCeeeEeeeeecccC
Q 021036 207 RLMLLAVGKGS-------------------------------------------GSFDLWKCDISCNKFDKVGSYNAHDQ 243 (318)
Q Consensus 207 ~~~~l~~~~~d-------------------------------------------g~i~vw~~~~~~~~~~~~~~~~~h~~ 243 (318)
+..++++...+ |.|..| |..+++ .+.+.. +..
T Consensus 403 ~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~--D~~tG~--~~W~~~-~~~ 477 (677)
T 1kb0_A 403 QTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAW--DPVAQK--AAWSVE-HVS 477 (677)
T ss_dssp TTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEE--ETTTTE--EEEEEE-ESS
T ss_pred CCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEE--eCCCCc--EEeecC-CCC
Confidence 77777665431 668888 667776 444443 334
Q ss_pred ceeEEEEcCCCCEEEEecCCCcEEEEEecCCceee
Q 021036 244 VVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQ 278 (318)
Q Consensus 244 ~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~ 278 (318)
++....+...+..++.++.||.++.||.++++..-
T Consensus 478 ~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw 512 (677)
T 1kb0_A 478 PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLW 512 (677)
T ss_dssp SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCcCcceEeCCCEEEEECCCCcEEEEECCCCceee
Confidence 45555667778888889999999999999877653
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.63 E-value=4.7e-06 Score=66.27 Aligned_cols=182 Identities=14% Similarity=0.073 Sum_probs=107.1
Q ss_pred ccEEEEecCCC--cEEEEEccCCccccccccccCCceeEEeeeccccc-cEEEEEeeeecCCCCCCCcEEEEEeCCCcEE
Q 021036 84 FSILAVGGRSG--KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNS-WITSISLAVLSSDSSNPQVLLVTGSSDGSVR 160 (318)
Q Consensus 84 ~~~l~~g~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~ 160 (318)
+.++.+.+.+| .|+.+|+++++. ++.+..... .--.+.. . ++++.++.-.++.+.
T Consensus 53 ~~LyestG~~g~S~v~~vD~~Tgkv--------------~~~~~l~~~~FgeGit~-------~-g~~ly~ltw~~~~v~ 110 (262)
T 3nol_A 53 GYFYESTGLNGRSSIRKVDIESGKT--------------LQQIELGKRYFGEGISD-------W-KDKIVGLTWKNGLGF 110 (262)
T ss_dssp TEEEEEEEETTEEEEEEECTTTCCE--------------EEEEECCTTCCEEEEEE-------E-TTEEEEEESSSSEEE
T ss_pred CEEEEECCCCCCceEEEEECCCCcE--------------EEEEecCCccceeEEEE-------e-CCEEEEEEeeCCEEE
Confidence 36777777766 899999999763 333322111 1233554 2 234444444689999
Q ss_pred EEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeec
Q 021036 161 IWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNA 240 (318)
Q Consensus 161 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 240 (318)
++|..+.+.+.++..... ...++ ++++.|+.++.++.|.++ |..+.+ .+.++..
T Consensus 111 v~D~~t~~~~~ti~~~~e-----------------G~glt-----~dg~~L~~SdGs~~i~~i--Dp~T~~--v~~~I~V 164 (262)
T 3nol_A 111 VWNIRNLRQVRSFNYDGE-----------------GWGLT-----HNDQYLIMSDGTPVLRFL--DPESLT--PVRTITV 164 (262)
T ss_dssp EEETTTCCEEEEEECSSC-----------------CCCEE-----ECSSCEEECCSSSEEEEE--CTTTCS--EEEEEEC
T ss_pred EEECccCcEEEEEECCCC-----------------ceEEe-----cCCCEEEEECCCCeEEEE--cCCCCe--EEEEEEe
Confidence 999999998888764321 12233 456666666667778887 666655 3333332
Q ss_pred --cc---CceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCc-EEE
Q 021036 241 --HD---QVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNL-VVA 314 (318)
Q Consensus 241 --h~---~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~l~ 314 (318)
.. ..+..+.|. +|+..+..-.+..|.+.|..+++........... ........-....+++||+|+++ +++
T Consensus 165 ~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~--~~~~~~~~~~~vlNGIA~dp~~~~lfV 241 (262)
T 3nol_A 165 TAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGIL--AEAGPLPSPIDVLNGIAWDKEHHRLFV 241 (262)
T ss_dssp EETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGG--GGSCSCCSSCCCEEEEEEETTTTEEEE
T ss_pred ccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCc--cccccccCcCCceEEEEEcCCCCEEEE
Confidence 12 234457776 6766666667889999999998875433221100 00000011123678999999654 555
Q ss_pred EE
Q 021036 315 MV 316 (318)
Q Consensus 315 ~~ 316 (318)
+|
T Consensus 242 TG 243 (262)
T 3nol_A 242 TG 243 (262)
T ss_dssp EE
T ss_pred EC
Confidence 54
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.61 E-value=7.5e-06 Score=65.13 Aligned_cols=182 Identities=13% Similarity=0.088 Sum_probs=110.6
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEE
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWD 163 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd 163 (318)
+.++.+.+.+|.|+++|+++++... .+ +.. ...-..++. . ++++.++.-.++.+.++|
T Consensus 65 ~~Ly~stG~~g~v~~iD~~Tgkv~~-----------~~--l~~-~~FgeGit~-------~-g~~Ly~ltw~~~~v~V~D 122 (268)
T 3nok_A 65 GHFFESTGHQGTLRQLSLESAQPVW-----------ME--RLG-NIFAEGLAS-------D-GERLYQLTWTEGLLFTWS 122 (268)
T ss_dssp TEEEEEETTTTEEEECCSSCSSCSE-----------EE--ECT-TCCEEEEEE-------C-SSCEEEEESSSCEEEEEE
T ss_pred CEEEEEcCCCCEEEEEECCCCcEEe-----------EE--CCC-CcceeEEEE-------e-CCEEEEEEccCCEEEEEE
Confidence 3678888889999999999977531 11 222 112234555 3 334555555789999999
Q ss_pred CCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeec--c
Q 021036 164 GYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNA--H 241 (318)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~--h 241 (318)
..+.+.+.++..... + ..++ ++++.|+.++.++.|.++ |..+.+ .+.++.. +
T Consensus 123 ~~Tl~~~~ti~~~~e--------------G-wGLt-------~Dg~~L~vSdGs~~l~~i--Dp~T~~--v~~~I~V~~~ 176 (268)
T 3nok_A 123 GMPPQRERTTRYSGE--------------G-WGLC-------YWNGKLVRSDGGTMLTFH--EPDGFA--LVGAVQVKLR 176 (268)
T ss_dssp TTTTEEEEEEECSSC--------------C-CCEE-------EETTEEEEECSSSEEEEE--CTTTCC--EEEEEECEET
T ss_pred CCcCcEEEEEeCCCc--------------e-eEEe-------cCCCEEEEECCCCEEEEE--cCCCCe--EEEEEEeCCC
Confidence 999998888764321 1 2333 356677777778888887 666655 3333332 2
Q ss_pred cC---ceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCC-CCCCccccccCCCcceeeeEEEEcCC-CcEEEEE
Q 021036 242 DQ---VVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPT-NTPGLQSCTDLPDAFVSCLGMAVSPG-NLVVAMV 316 (318)
Q Consensus 242 ~~---~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~h~~~v~~v~~sp~-~~~l~~~ 316 (318)
.. .+..+.|. +|+.++..-.+..|.+.|..+++........ -.+. .......-....+++|++|+ .++++||
T Consensus 177 g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~--~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 177 GQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRA--VAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp TEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHH--HTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCccc--ccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 22 34567776 7766666667889999999998765332111 0000 00000111236789999995 4566665
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.3e-05 Score=63.09 Aligned_cols=181 Identities=11% Similarity=0.037 Sum_probs=106.6
Q ss_pred cEEEEecCCC--cEEEEEccCCccccccccccCCceeEEeeeccccc-cEEEEEeeeecCCCCCCCcEEEEEeCCCcEEE
Q 021036 85 SILAVGGRSG--KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNS-WITSISLAVLSSDSSNPQVLLVTGSSDGSVRI 161 (318)
Q Consensus 85 ~~l~~g~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~i 161 (318)
.++.+.+.+| .|+.+|+++++. ++...-... .--.++. . ++++.+..-.++.+.+
T Consensus 32 ~LyestG~~g~S~v~~vD~~tgkv--------------~~~~~l~~~~fgeGi~~-------~-~~~ly~ltw~~~~v~v 89 (243)
T 3mbr_X 32 HLYESTGETGRSSVRKVDLETGRI--------------LQRAEVPPPYFGAGIVA-------W-RDRLIQLTWRNHEGFV 89 (243)
T ss_dssp EEEEEECCTTSCEEEEEETTTCCE--------------EEEEECCTTCCEEEEEE-------E-TTEEEEEESSSSEEEE
T ss_pred EEEEECCCCCCceEEEEECCCCCE--------------EEEEeCCCCcceeEEEE-------e-CCEEEEEEeeCCEEEE
Confidence 5667767654 899999999763 333322111 1133444 2 3445555556899999
Q ss_pred EECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeec-
Q 021036 162 WDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNA- 240 (318)
Q Consensus 162 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~- 240 (318)
+|..+.+.+.++..... + ..++ +++..|+++..++.|.++ |..+.+ .+.++.-
T Consensus 90 ~D~~tl~~~~ti~~~~~--------------G-wglt-------~dg~~L~vSdgs~~l~~i--Dp~t~~--~~~~I~V~ 143 (243)
T 3mbr_X 90 YDLATLTPRARFRYPGE--------------G-WALT-------SDDSHLYMSDGTAVIRKL--DPDTLQ--QVGSIKVT 143 (243)
T ss_dssp EETTTTEEEEEEECSSC--------------C-CEEE-------ECSSCEEEECSSSEEEEE--CTTTCC--EEEEEECE
T ss_pred EECCcCcEEEEEeCCCC--------------c-eEEe-------eCCCEEEEECCCCeEEEE--eCCCCe--EEEEEEEc
Confidence 99999998888764321 1 2333 356666666678888887 666655 3334332
Q ss_pred -cc---CceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeee-cCCCCCCccccccCCCcceeeeEEEEcCCC-cEEE
Q 021036 241 -HD---QVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVS-IPTNTPGLQSCTDLPDAFVSCLGMAVSPGN-LVVA 314 (318)
Q Consensus 241 -h~---~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~-~~l~ 314 (318)
+. ..+..+.|. +|+.++..-.+..|.+.|..+++..... ...-.+... .....-....+++|++|++ ++++
T Consensus 144 ~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~--~~~~~~~~vlNGIA~d~~~~~lfV 220 (243)
T 3mbr_X 144 AGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDAD--ALTDSTNDVLNGIAFDAEHDRLFV 220 (243)
T ss_dssp ETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTT--SCCCTTSSCEEEEEEETTTTEEEE
T ss_pred cCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccc--cccCCcCCceEEEEEcCCCCEEEE
Confidence 22 234556665 6666666656789999999998765432 221100000 0001122467899999964 5566
Q ss_pred EE
Q 021036 315 MV 316 (318)
Q Consensus 315 ~~ 316 (318)
+|
T Consensus 221 TG 222 (243)
T 3mbr_X 221 TG 222 (243)
T ss_dssp EE
T ss_pred EC
Confidence 55
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.59 E-value=2.7e-06 Score=75.45 Aligned_cols=109 Identities=13% Similarity=0.063 Sum_probs=67.2
Q ss_pred ceeEEEEeeccCCCCceEEEEEe-CCCcEEEeeeccCC----Ce----eeEeeeeecccCceeEEEEcCCCCEEEEecCC
Q 021036 193 PISVLSLILPVQSPRLMLLAVGK-GSGSFDLWKCDISC----NK----FDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQD 263 (318)
Q Consensus 193 ~v~~l~~~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~----~~----~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 263 (318)
...++.++ |||+++++++ .+.+|.++|++... ++ ...+.+.. -......++|+|+|...++.-.|
T Consensus 278 ~PhGv~~s-----PDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~dG~aY~t~~ld 351 (595)
T 1fwx_A 278 NPHGCNMA-----PDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDGRGNAYTSLFLD 351 (595)
T ss_dssp SCCCEEEC-----TTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECTTSEEEEEETTT
T ss_pred CceEEEEc-----CCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECCCCeEEEEEecC
Confidence 45678888 9999777766 78889999654210 00 01222332 22456889999999555667789
Q ss_pred CcEEEEEecCC----------c-eeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 264 NFVRSWIFHGN----------S-LSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 264 ~~v~iwd~~~~----------~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
++|..||+... . +.++..+.. ++|...-.++.++|||++|++..
T Consensus 352 sqV~kwdi~~a~~~~~g~~~~~vi~kidV~yq----------pGh~~~~~g~t~~~DGk~l~~~N 406 (595)
T 1fwx_A 352 SQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQ----------PGHLKTVMGETLDATNDWLVCLS 406 (595)
T ss_dssp TEEEEEEHHHHHHHHHTCSCCCEEEEEECSSC----------EEEEEETTTTSTTCCSSEEEEEE
T ss_pred CcEEEEEhhHhhhhhcccccceeEEEeecccc----------cccceeccceEeCCCCCEEEEcC
Confidence 99999998761 1 112222211 12333334556789999988753
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.3e-05 Score=73.97 Aligned_cols=55 Identities=15% Similarity=0.145 Sum_probs=39.6
Q ss_pred CcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCcee
Q 021036 218 GSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLS 277 (318)
Q Consensus 218 g~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 277 (318)
|.|+.| |..+++ .+.++..+ .++..-.+...+.+++.++.||.++.||.++++..
T Consensus 455 g~l~A~--D~~tG~--~~W~~~~~-~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~l 509 (689)
T 1yiq_A 455 GKLIAW--DPVKQQ--AAWEVPYV-TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKL 509 (689)
T ss_dssp EEEEEE--ETTTTE--EEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred eeEEEE--ECCCCC--eEeEccCC-CCccCccceECCCEEEEECCCCcEEEEECCCCccc
Confidence 668888 677776 44444433 33344456667788999999999999999998765
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.59 E-value=2e-05 Score=66.82 Aligned_cols=198 Identities=9% Similarity=0.030 Sum_probs=111.4
Q ss_pred CCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEEEEccC-C
Q 021036 26 SKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICV-P 104 (318)
Q Consensus 26 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~-~ 104 (318)
++.|.++|+.+++.+..+.... |....|.+ .+.+++.+.||++.+.+..+ +
T Consensus 159 ~~~VsVID~~t~~vv~tI~v~g-----------~~~~~P~g-----------------~~~~~~~~~DG~~~~v~~~~~g 210 (386)
T 3sjl_D 159 APAVGVVDLEGKAFKRMLDVPD-----------CYHIFPTA-----------------PDTFFMHCRDGSLAKVAFGTEG 210 (386)
T ss_dssp SCEEEEEETTTTEEEEEEECCS-----------EEEEEEEE-----------------TTEEEEEETTSCEEEEECCSSS
T ss_pred CCeEEEEECCCCcEEEEEECCC-----------cceeecCC-----------------CceeEEECCCCCEEEEECCCCC
Confidence 6889999999988777665422 11122444 35666777899988888875 3
Q ss_pred ccccccccccCCceeEEeeeccccccEE-EEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcce--eeeecccccccc
Q 021036 105 KCYSVEDCKVPTTAVLIGLFQAHNSWIT-SISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQEL--QKSAEAHCVPFS 181 (318)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~--~~~~~~~~~~~~ 181 (318)
+... .....+.....++. ...| ..++|++++ .+.+|+|.+.|+.++.. ...+.....
T Consensus 211 ~v~~----------~~~~~~~~~~~~~~~~~~~------~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~--- 270 (386)
T 3sjl_D 211 TPEI----------THTEVFHPEDEFLINHPAY------SQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTE--- 270 (386)
T ss_dssp CCEE----------EECCCCSCTTSCBCSCCEE------ETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCH---
T ss_pred eEEE----------eecceecccccccccccee------EcCCCcEEE-EeCCCEEEEEECCCCcceeecceecccc---
Confidence 3210 00000111111221 1244 135675555 55589999999976542 222210000
Q ss_pred cceeeeeecccceeEEEEeeccCCCCceEEEEEeC--------CCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCC
Q 021036 182 LLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKG--------SGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFD 253 (318)
Q Consensus 182 ~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~--------dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 253 (318)
..............++++ ++++.++.... +..=.||-+|..+.+ .+.++.. ...+..+.+++|
T Consensus 271 -~~~~~g~~p~g~q~~a~~-----~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k--v~~~i~v-g~~~~~lavs~D 341 (386)
T 3sjl_D 271 -AERADGWRPGGWQQVAYH-----RALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE--RLAKFEM-GHEIDSINVSQD 341 (386)
T ss_dssp -HHHHTTEEECSSSCEEEE-----TTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC--EEEEEEE-EEEECEEEECSS
T ss_pred -ccccccccCCCcceeeEC-----CCCCeEEEEeccccccccCCCCCEEEEEECCCCe--EEEEEEC-CCCcceEEECCC
Confidence 000000011233456778 78877777643 112334444887877 4555542 236789999999
Q ss_pred CC-EEEE-ecCCCcEEEEEecCCceeeee
Q 021036 254 GC-CLYS-CSQDNFVRSWIFHGNSLSQVS 280 (318)
Q Consensus 254 ~~-~l~s-~~~d~~v~iwd~~~~~~~~~~ 280 (318)
++ +|++ ...++.|.++|..+++.....
T Consensus 342 ~~~~ly~tn~~~~~VsViD~~t~k~~~~i 370 (386)
T 3sjl_D 342 EKPLLYALSTGDKTLYIHDAESGEELRSV 370 (386)
T ss_dssp SSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred CCeEEEEEcCCCCeEEEEECCCCcEEEEe
Confidence 87 5655 456899999999988766543
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.52 E-value=3.1e-05 Score=61.59 Aligned_cols=179 Identities=11% Similarity=-0.099 Sum_probs=111.9
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCc
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGK 95 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~ 95 (318)
+.....+.+.++.+++.|+.+++.+..+ ........ .++. .+ +++......++.
T Consensus 64 ~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~Fge------Git~--~g-----------------~~Ly~ltw~~~~ 117 (268)
T 3nok_A 64 QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAE------GLAS--DG-----------------ERLYQLTWTEGL 117 (268)
T ss_dssp TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEE------EEEE--CS-----------------SCEEEEESSSCE
T ss_pred CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCccee------EEEE--eC-----------------CEEEEEEccCCE
Confidence 3455677788889999999999987776 42211001 0222 22 245566678999
Q ss_pred EEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecc
Q 021036 96 VSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEA 175 (318)
Q Consensus 96 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 175 (318)
+.+||.++. +.+.++..-. .=+.+++ +++.|+.+..++.|.++|..+.+....+..
T Consensus 118 v~V~D~~Tl--------------~~~~ti~~~~-eGwGLt~---------Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V 173 (268)
T 3nok_A 118 LFTWSGMPP--------------QRERTTRYSG-EGWGLCY---------WNGKLVRSDGGTMLTFHEPDGFALVGAVQV 173 (268)
T ss_dssp EEEEETTTT--------------EEEEEEECSS-CCCCEEE---------ETTEEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred EEEEECCcC--------------cEEEEEeCCC-ceeEEec---------CCCEEEEECCCCEEEEEcCCCCeEEEEEEe
Confidence 999999984 4555554322 2245555 456677666789999999999988877765
Q ss_pred cccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeec-----------ccCc
Q 021036 176 HCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNA-----------HDQV 244 (318)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~-----------h~~~ 244 (318)
...+. .-..++.+.|. +|.+++....+..|.+. |.++++......+.+ -..-
T Consensus 174 ~~~g~---------~v~~lNeLe~~------dG~lyanvw~s~~I~vI--Dp~TG~V~~~Idl~~L~~~~~~~~~~~~~v 236 (268)
T 3nok_A 174 KLRGQ---------PVELINELECA------NGVIYANIWHSSDVLEI--DPATGTVVGVIDASALTRAVAGQVTNPEAV 236 (268)
T ss_dssp EETTE---------ECCCEEEEEEE------TTEEEEEETTCSEEEEE--CTTTCBEEEEEECHHHHHHHTTTCCCTTCC
T ss_pred CCCCc---------ccccccccEEe------CCEEEEEECCCCeEEEE--eCCCCcEEEEEECCCCcccccccccCcCCc
Confidence 43211 01134566774 67766666567777776 788877333222221 1134
Q ss_pred eeEEEEcCCCC-EEEEec
Q 021036 245 VTGLAWAFDGC-CLYSCS 261 (318)
Q Consensus 245 v~~~~~~~~~~-~l~s~~ 261 (318)
...++|+|+++ +++||-
T Consensus 237 lNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 237 LNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EEEEEECTTTCCEEEEET
T ss_pred eEEEEEcCCCCEEEEeCC
Confidence 67899999765 555553
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.52 E-value=4.5e-05 Score=65.71 Aligned_cols=73 Identities=7% Similarity=-0.017 Sum_probs=53.3
Q ss_pred EEEeeccCCCCceEEEEEeC----------CCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCC-EEEEec-CCC
Q 021036 197 LSLILPVQSPRLMLLAVGKG----------SGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGC-CLYSCS-QDN 264 (318)
Q Consensus 197 l~~~~~~~~~~~~~l~~~~~----------dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~-~d~ 264 (318)
++++ ++++.+++... ++.|.++ |..+.+ .+.++.... ....+.|+|+|+ ++++.. .++
T Consensus 324 va~s-----~dg~rlyVa~~~~~~gthk~~s~~VsVI--D~~T~k--vv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~ 393 (426)
T 3c75_H 324 TAYH-----RQSDRIYLLVDQRDEWKHKAASRFVVVL--NAETGE--RINKIELGH-EIDSINVSQDAEPLLYALSAGTQ 393 (426)
T ss_dssp EEEE-----GGGTEEEEEEEECCTTCTTSCEEEEEEE--ETTTCC--EEEEEEEEE-EECEEEECCSSSCEEEEEETTTT
T ss_pred eEEc-----CCCCEEEEEecccccccccCCCCEEEEE--ECCCCe--EEEEEECCC-CcCeEEEccCCCEEEEEEcCCCC
Confidence 6777 78777776642 2457777 676766 555554322 478999999998 787777 589
Q ss_pred cEEEEEecCCceeee
Q 021036 265 FVRSWIFHGNSLSQV 279 (318)
Q Consensus 265 ~v~iwd~~~~~~~~~ 279 (318)
.|.++|+.+.+....
T Consensus 394 ~VsVID~~t~kvv~t 408 (426)
T 3c75_H 394 TLHIYDAATGEELRS 408 (426)
T ss_dssp EEEEEETTTCCEEEE
T ss_pred eEEEEECCCCCEEEE
Confidence 999999999876643
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.50 E-value=0.00013 Score=58.21 Aligned_cols=194 Identities=10% Similarity=0.092 Sum_probs=115.6
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeee--ccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEE
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLF--QAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRI 161 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~i 161 (318)
+.++++...++.|...|.. ++ .++.+ .+ ......|++ ..++.++++.-.++.+.+
T Consensus 39 ~~L~aV~d~~~~I~~ld~~-g~--------------v~~~i~l~g-~~D~EGIa~-------~~~g~~~vs~E~~~~l~~ 95 (255)
T 3qqz_A 39 NTLFSTINKPAAIVEMTTN-GD--------------LIRTIPLDF-VKDLETIEY-------IGDNQFVISDERDYAIYV 95 (255)
T ss_dssp TEEEEEEETTEEEEEEETT-CC--------------EEEEEECSS-CSSEEEEEE-------CSTTEEEEEETTTTEEEE
T ss_pred CEEEEEECCCCeEEEEeCC-CC--------------EEEEEecCC-CCChHHeEE-------eCCCEEEEEECCCCcEEE
Confidence 3566667788888888887 44 23333 22 245788999 778877777667789999
Q ss_pred EECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeecc--CCCeeeEeee--
Q 021036 162 WDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDI--SCNKFDKVGS-- 237 (318)
Q Consensus 162 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~--~~~~~~~~~~-- 237 (318)
+++.....+........++ ...........|+++ |.++.|+++.......+|.++- ..........
T Consensus 96 ~~v~~~~~i~~~~~~~~~~-----~~~~~N~g~EGLA~d-----~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~ 165 (255)
T 3qqz_A 96 ISLTPNSEVKILKKIKIPL-----QESPTNCGFEGLAYS-----RQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKA 165 (255)
T ss_dssp EEECTTCCEEEEEEEECCC-----SSCCCSSCCEEEEEE-----TTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHH
T ss_pred EEcCCCCeeeeeeeecccc-----ccccccCCcceEEEe-----CCCCEEEEEECcCCceEEEEcccccCCceeeecchh
Confidence 9887554322111111000 001234467899999 8887777777666667775551 1111111100
Q ss_pred ee--cccCceeEEEEcCC-CCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEE
Q 021036 238 YN--AHDQVVTGLAWAFD-GCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVA 314 (318)
Q Consensus 238 ~~--~h~~~v~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~ 314 (318)
+. .+...+.+++++|. +++++.......+..+|..+.....+...+... .+..--..-.+|+|.++|.+.+
T Consensus 166 ~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~------~l~~~~~qpEGia~d~~G~lyI 239 (255)
T 3qqz_A 166 LQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSR------GLSHNIKQAEGVAMDASGNIYI 239 (255)
T ss_dssp HHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGG------GCSSCCCSEEEEEECTTCCEEE
T ss_pred hccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccC------CcccccCCCCeeEECCCCCEEE
Confidence 00 12345789999996 567777778888999998776554444443211 1111112457999999998665
Q ss_pred EE
Q 021036 315 MV 316 (318)
Q Consensus 315 ~~ 316 (318)
+.
T Consensus 240 vs 241 (255)
T 3qqz_A 240 VS 241 (255)
T ss_dssp EE
T ss_pred Ec
Confidence 53
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=8.3e-05 Score=59.66 Aligned_cols=182 Identities=9% Similarity=-0.062 Sum_probs=114.5
Q ss_pred CCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCc
Q 021036 26 SKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPK 105 (318)
Q Consensus 26 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~ 105 (318)
+..+++.|+.+++.+..+......+.. .+++. + +.+.++...++.+.++|.++.+
T Consensus 43 ~s~v~~iD~~tg~v~~~i~l~~~~fge------Gi~~~--g-----------------~~lyv~t~~~~~v~viD~~t~~ 97 (266)
T 2iwa_A 43 RSSVRQVALQTGKVENIHKMDDSYFGE------GLTLL--N-----------------EKLYQVVWLKNIGFIYDRRTLS 97 (266)
T ss_dssp TCEEEEEETTTCCEEEEEECCTTCCEE------EEEEE--T-----------------TEEEEEETTCSEEEEEETTTTE
T ss_pred CCEEEEEECCCCCEEEEEecCCCcceE------EEEEe--C-----------------CEEEEEEecCCEEEEEECCCCc
Confidence 578999999999877766542211111 13332 2 2456666788999999999844
Q ss_pred cccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeeccccccccccee
Q 021036 106 CYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKE 185 (318)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 185 (318)
.+..+..-...=..+++ +|+.|+++..+++|.++|..+.+....+.....+.
T Consensus 98 --------------v~~~i~~g~~~g~glt~---------Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~----- 149 (266)
T 2iwa_A 98 --------------NIKNFTHQMKDGWGLAT---------DGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGH----- 149 (266)
T ss_dssp --------------EEEEEECCSSSCCEEEE---------CSSSEEEECSSSEEEEECTTTCCEEEEEECEETTE-----
T ss_pred --------------EEEEEECCCCCeEEEEE---------CCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCc-----
Confidence 44555321111133544 45556666678999999999988777765432100
Q ss_pred eeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecc-------------cCceeEEEEcC
Q 021036 186 VVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAH-------------DQVVTGLAWAF 252 (318)
Q Consensus 186 ~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h-------------~~~v~~~~~~~ 252 (318)
.-..++.+.+. ++.+++....++.|.+. |..+++ .+..+.-. ......++|+|
T Consensus 150 ----p~~~~nele~~------dg~lyvn~~~~~~V~vI--D~~tg~--V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~ 215 (266)
T 2iwa_A 150 ----RVIRLNELEYI------NGEVWANIWQTDCIARI--SAKDGT--LLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQ 215 (266)
T ss_dssp ----ECCCEEEEEEE------TTEEEEEETTSSEEEEE--ETTTCC--EEEEEECHHHHHHHHHTTCTTCCCEEEEEEET
T ss_pred ----ccccceeEEEE------CCEEEEecCCCCeEEEE--ECCCCc--EEEEEECCCcccccccccccccCceEEEEEcC
Confidence 00124566765 56666665567888886 777776 34444311 13458999999
Q ss_pred CCC-EEEEecCCCcEEEEEecCC
Q 021036 253 DGC-CLYSCSQDNFVRSWIFHGN 274 (318)
Q Consensus 253 ~~~-~l~s~~~d~~v~iwd~~~~ 274 (318)
+++ +++++...+.|...++...
T Consensus 216 ~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 216 ENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp TTTEEEEEETTCSEEEEEEEEEC
T ss_pred CCCEEEEECCCCCeEEEEEEecc
Confidence 976 5667778889999988654
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.42 E-value=4.5e-05 Score=60.62 Aligned_cols=181 Identities=12% Similarity=0.047 Sum_probs=108.3
Q ss_pred ccceEEeeCCC--ceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCC
Q 021036 17 THPTVAASKSK--GNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSG 94 (318)
Q Consensus 17 ~~~~~t~s~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg 94 (318)
.....+.+.++ .+++.|+.+++.+..+......... .++. .+ +++......++
T Consensus 53 ~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~Fge------Git~--~g-----------------~~ly~ltw~~~ 107 (262)
T 3nol_A 53 GYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGE------GISD--WK-----------------DKIVGLTWKNG 107 (262)
T ss_dssp TEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEE------EEEE--ET-----------------TEEEEEESSSS
T ss_pred CEEEEECCCCCCceEEEEECCCCcEEEEEecCCcccee------EEEE--eC-----------------CEEEEEEeeCC
Confidence 34455666665 8999999999887766542211000 0222 22 24555566789
Q ss_pred cEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeec
Q 021036 95 KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAE 174 (318)
Q Consensus 95 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 174 (318)
.+.++|.++.+ .+.++.-.... +.+++ +++.|+.+..++.|.++|..+.+....+.
T Consensus 108 ~v~v~D~~t~~--------------~~~ti~~~~eG-~glt~---------dg~~L~~SdGs~~i~~iDp~T~~v~~~I~ 163 (262)
T 3nol_A 108 LGFVWNIRNLR--------------QVRSFNYDGEG-WGLTH---------NDQYLIMSDGTPVLRFLDPESLTPVRTIT 163 (262)
T ss_dssp EEEEEETTTCC--------------EEEEEECSSCC-CCEEE---------CSSCEEECCSSSEEEEECTTTCSEEEEEE
T ss_pred EEEEEECccCc--------------EEEEEECCCCc-eEEec---------CCCEEEEECCCCeEEEEcCCCCeEEEEEE
Confidence 99999999844 45555432221 34555 45556666667889999999988887766
Q ss_pred ccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecc----------cCc
Q 021036 175 AHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAH----------DQV 244 (318)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h----------~~~ 244 (318)
...... .-..++.+.+. +|.+++..-.++.|.+. |.++++......+.+- ..-
T Consensus 164 V~~~g~---------~~~~lNELe~~------~G~lyan~w~~~~I~vI--Dp~tG~V~~~Id~~~L~~~~~~~~~~~~v 226 (262)
T 3nol_A 164 VTAHGE---------ELPELNELEWV------DGEIFANVWQTNKIVRI--DPETGKVTGIIDLNGILAEAGPLPSPIDV 226 (262)
T ss_dssp CEETTE---------ECCCEEEEEEE------TTEEEEEETTSSEEEEE--CTTTCBEEEEEECTTGGGGSCSCCSSCCC
T ss_pred eccCCc---------cccccceeEEE------CCEEEEEEccCCeEEEE--ECCCCcEEEEEECCcCccccccccCcCCc
Confidence 532100 01134456664 67766666567778776 7778773322222111 134
Q ss_pred eeEEEEcCCCCEEEEecCC
Q 021036 245 VTGLAWAFDGCCLYSCSQD 263 (318)
Q Consensus 245 v~~~~~~~~~~~l~s~~~d 263 (318)
...++|+|+++.|+..+..
T Consensus 227 lNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 227 LNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EEEEEEETTTTEEEEEETT
T ss_pred eEEEEEcCCCCEEEEECCC
Confidence 5789999987766555443
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.37 E-value=0.00055 Score=55.05 Aligned_cols=169 Identities=9% Similarity=-0.049 Sum_probs=93.0
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCC-CcEEEEEeC--CCcEE
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNP-QVLLVTGSS--DGSVR 160 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~-~~~l~s~~~--d~~v~ 160 (318)
+.++++-...+.|.+++.+.... +.+ ..........+++ .++ +.++++... .+.|.
T Consensus 91 ~~lyv~d~~~~~I~~~~~~g~~~------------~~~--~~~~~~~P~~i~v-------d~~~g~lyv~~~~~~~~~I~ 149 (267)
T 1npe_A 91 RTIFWTDSQLDRIEVAKMDGTQR------------RVL--FDTGLVNPRGIVT-------DPVRGNLYWTDWNRDNPKIE 149 (267)
T ss_dssp TEEEEEETTTTEEEEEETTSCSC------------EEE--ECSSCSSEEEEEE-------ETTTTEEEEEECCSSSCEEE
T ss_pred CeEEEEECCCCEEEEEEcCCCCE------------EEE--EECCCCCccEEEE-------eeCCCEEEEEECCCCCcEEE
Confidence 35666666778899999864321 111 1111235688999 674 444444433 36888
Q ss_pred EEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceE-EEEEeCCCcEEEeeeccCCCeeeEeeeee
Q 021036 161 IWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLML-LAVGKGSGSFDLWKCDISCNKFDKVGSYN 239 (318)
Q Consensus 161 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~-l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 239 (318)
.+++.... ...+... .......++++ +++.. +++-...+.|.+++. ....... .+.
T Consensus 150 ~~~~dg~~-~~~~~~~-------------~~~~P~gia~d-----~~~~~lyv~d~~~~~I~~~~~--~g~~~~~--~~~ 206 (267)
T 1npe_A 150 TSHMDGTN-RRILAQD-------------NLGLPNGLTFD-----AFSSQLCWVDAGTHRAECLNP--AQPGRRK--VLE 206 (267)
T ss_dssp EEETTSCC-CEEEECT-------------TCSCEEEEEEE-----TTTTEEEEEETTTTEEEEEET--TEEEEEE--EEE
T ss_pred EEecCCCC-cEEEEEC-------------CCCCCcEEEEc-----CCCCEEEEEECCCCEEEEEec--CCCceEE--Eec
Confidence 88876432 2221100 11245788999 77554 455556778998854 3332111 122
Q ss_pred cccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCc
Q 021036 240 AHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNL 311 (318)
Q Consensus 240 ~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 311 (318)
+ ......++.. .+..+++....+.|..+|..+++..........+ ...++++.|++-
T Consensus 207 ~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~-------------~p~gi~~~~~~~ 263 (267)
T 1npe_A 207 G-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQT-------------RLYGITIALSQC 263 (267)
T ss_dssp C-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCC-------------CCCCEEEECSCC
T ss_pred C-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEcccccc-------------ccceeeecCccC
Confidence 2 2334566654 3444455556689999999877654332221111 347888888764
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.37 E-value=0.00054 Score=55.10 Aligned_cols=149 Identities=7% Similarity=-0.087 Sum_probs=88.1
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCC-CcEEEEEeCCCcEEEE
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNP-QVLLVTGSSDGSVRIW 162 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~-~~~l~s~~~d~~v~iw 162 (318)
+.++++-..++.|..++...... ...+.........+++ .+. +.++++-...+.|.++
T Consensus 48 ~~ly~~d~~~~~I~~~~~~g~~~--------------~~~~~~~~~~p~~ia~-------d~~~~~lyv~d~~~~~I~~~ 106 (267)
T 1npe_A 48 KVVYWTDISEPSIGRASLHGGEP--------------TTIIRQDLGSPEGIAL-------DHLGRTIFWTDSQLDRIEVA 106 (267)
T ss_dssp TEEEEEETTTTEEEEEESSSCCC--------------EEEECTTCCCEEEEEE-------ETTTTEEEEEETTTTEEEEE
T ss_pred CEEEEEECCCCEEEEEecCCCCc--------------EEEEECCCCCccEEEE-------EecCCeEEEEECCCCEEEEE
Confidence 35666666788999999875431 1112222245688999 664 4555555567899999
Q ss_pred ECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeC---CCcEEEeeeccCCCeeeEeeeee
Q 021036 163 DGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKG---SGSFDLWKCDISCNKFDKVGSYN 239 (318)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~---dg~i~vw~~~~~~~~~~~~~~~~ 239 (318)
++........... .......++++ |++..|+.+.. .+.|..++++....+ .+. .
T Consensus 107 ~~~g~~~~~~~~~--------------~~~~P~~i~vd-----~~~g~lyv~~~~~~~~~I~~~~~dg~~~~--~~~--~ 163 (267)
T 1npe_A 107 KMDGTQRRVLFDT--------------GLVNPRGIVTD-----PVRGNLYWTDWNRDNPKIETSHMDGTNRR--ILA--Q 163 (267)
T ss_dssp ETTSCSCEEEECS--------------SCSSEEEEEEE-----TTTTEEEEEECCSSSCEEEEEETTSCCCE--EEE--C
T ss_pred EcCCCCEEEEEEC--------------CCCCccEEEEe-----eCCCEEEEEECCCCCcEEEEEecCCCCcE--EEE--E
Confidence 9864322111110 01245788999 85544444443 467887754432221 221 1
Q ss_pred cccCceeEEEEcCCCCEE-EEecCCCcEEEEEecCCce
Q 021036 240 AHDQVVTGLAWAFDGCCL-YSCSQDNFVRSWIFHGNSL 276 (318)
Q Consensus 240 ~h~~~v~~~~~~~~~~~l-~s~~~d~~v~iwd~~~~~~ 276 (318)
........++++|++..| ++-...+.|..+|+.+...
T Consensus 164 ~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~ 201 (267)
T 1npe_A 164 DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR 201 (267)
T ss_dssp TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE
T ss_pred CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCce
Confidence 223456889999987655 4555668899999876443
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.36 E-value=0.00029 Score=55.44 Aligned_cols=176 Identities=10% Similarity=-0.003 Sum_probs=106.0
Q ss_pred eEEeeCC--CceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEE
Q 021036 20 TVAASKS--KGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVS 97 (318)
Q Consensus 20 ~~t~s~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~ 97 (318)
..+.+.+ ..++..|+.+++.+..+.......... ++. .+ +++......++.+.
T Consensus 34 yestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeG------i~~--~~-----------------~~ly~ltw~~~~v~ 88 (243)
T 3mbr_X 34 YESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAG------IVA--WR-----------------DRLIQLTWRNHEGF 88 (243)
T ss_dssp EEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEE------EEE--ET-----------------TEEEEEESSSSEEE
T ss_pred EEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeE------EEE--eC-----------------CEEEEEEeeCCEEE
Confidence 3444444 389999999998877665432111111 222 12 24556667899999
Q ss_pred EEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccc
Q 021036 98 LWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHC 177 (318)
Q Consensus 98 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 177 (318)
++|.++. +.+.++...... +.+++ ++..|+.+..++.|.++|..+.+....+....
T Consensus 89 v~D~~tl--------------~~~~ti~~~~~G-wglt~---------dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~ 144 (243)
T 3mbr_X 89 VYDLATL--------------TPRARFRYPGEG-WALTS---------DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA 144 (243)
T ss_dssp EEETTTT--------------EEEEEEECSSCC-CEEEE---------CSSCEEEECSSSEEEEECTTTCCEEEEEECEE
T ss_pred EEECCcC--------------cEEEEEeCCCCc-eEEee---------CCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc
Confidence 9999984 455555432222 56666 34455555668899999999988887776543
Q ss_pred cccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeec-----------ccCcee
Q 021036 178 VPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNA-----------HDQVVT 246 (318)
Q Consensus 178 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~-----------h~~~v~ 246 (318)
.+. .-..++.+.+. +|.+++..-.+..|.+. |.++++......+.+ -..-.+
T Consensus 145 ~g~---------~~~~lNeLe~~------~G~lyanvw~s~~I~vI--Dp~tG~V~~~idl~~l~~~~~~~~~~~~~vlN 207 (243)
T 3mbr_X 145 GGR---------PLDNLNELEWV------NGELLANVWLTSRIARI--DPASGKVVAWIDLQALVPDADALTDSTNDVLN 207 (243)
T ss_dssp TTE---------ECCCEEEEEEE------TTEEEEEETTTTEEEEE--CTTTCBEEEEEECGGGSTTTTSCCCTTSSCEE
T ss_pred CCc---------ccccceeeEEe------CCEEEEEECCCCeEEEE--ECCCCCEEEEEECCcCccccccccCCcCCceE
Confidence 211 01134556664 67766666567777776 787877322222221 113457
Q ss_pred EEEEcCCCCEEEEec
Q 021036 247 GLAWAFDGCCLYSCS 261 (318)
Q Consensus 247 ~~~~~~~~~~l~s~~ 261 (318)
.++++|+++.|+..+
T Consensus 208 GIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 208 GIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEEETTTTEEEEEE
T ss_pred EEEEcCCCCEEEEEC
Confidence 899999876554444
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.35 E-value=4.4e-05 Score=63.38 Aligned_cols=172 Identities=8% Similarity=-0.053 Sum_probs=98.8
Q ss_pred cccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeC
Q 021036 76 PQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSS 155 (318)
Q Consensus 76 ~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~ 155 (318)
.++...+++. |+.++.++.|..+|.+ ++. ...+......+.++.. ..++.+++. +
T Consensus 140 ~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~--------------~~~~~~~~~~~~~~~~-------d~~g~l~v~-t- 194 (330)
T 3hxj_A 140 ATPIVSEDGT-IYVGSNDNYLYAINPD-GTE--------------KWRFKTNDAITSAASI-------GKDGTIYFG-S- 194 (330)
T ss_dssp SCCEECTTSC-EEEECTTSEEEEECTT-SCE--------------EEEEECSSCCCSCCEE-------CTTCCEEEE-S-
T ss_pred eeeEEcCCCE-EEEEcCCCEEEEECCC-CCE--------------eEEEecCCCceeeeEE-------cCCCEEEEE-e-
Confidence 3344444555 5557778899999988 542 2223333445566666 566665544 4
Q ss_pred CCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEe
Q 021036 156 DGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKV 235 (318)
Q Consensus 156 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 235 (318)
+.|..+| .+++......... ..+.++... +++. +..++.++.+..+ +.... .+
T Consensus 195 -~~l~~~d-~~g~~~~~~~~~~--------------~~~~~~~~~-----~~g~-l~v~t~~~gl~~~--~~~g~---~~ 247 (330)
T 3hxj_A 195 -DKVYAIN-PDGTEKWNFYAGY--------------WTVTRPAIS-----EDGT-IYVTSLDGHLYAI--NPDGT---EK 247 (330)
T ss_dssp -SSEEEEC-TTSCEEEEECCSS--------------CCCSCCEEC-----TTSC-EEEEETTTEEEEE--CTTSC---EE
T ss_pred -CEEEEEC-CCCcEEEEEccCC--------------cceeceEEC-----CCCe-EEEEcCCCeEEEE--CCCCC---Ee
Confidence 8899999 6666555443221 246666776 6665 4556667778887 44333 23
Q ss_pred eeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 236 GSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 236 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
..+......+..+...+++. |..++.+|.|..+|..+.......... ..+.++...++|.+.+.
T Consensus 248 ~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~~g~~~~~~~~~~---------------~~~~~~~~d~~g~l~~g 311 (330)
T 3hxj_A 248 WRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAINPDGTEKWNFETGS---------------WIIATPVIDENGTIYFG 311 (330)
T ss_dssp EEEECSSCCCSCCEECTTSC-EEEECTTCEEEEECTTSCEEEEEECSS---------------CCCSCCEECTTCCEEEE
T ss_pred EEeeCCCCccccceEcCCCe-EEEecCCCCEEEECCCCcEEEEEEcCC---------------ccccceEEcCCCEEEEE
Confidence 33333334445566666664 666777888999986333333332221 13456666666665543
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.35 E-value=0.00036 Score=64.05 Aligned_cols=96 Identities=8% Similarity=-0.072 Sum_probs=58.2
Q ss_pred CCceEEEEEeCCC-----------cEEEeeeccCCCeeeEee--eeecccCc-eeEEEEcCCCCEEEEecCC--------
Q 021036 206 PRLMLLAVGKGSG-----------SFDLWKCDISCNKFDKVG--SYNAHDQV-VTGLAWAFDGCCLYSCSQD-------- 263 (318)
Q Consensus 206 ~~~~~l~~~~~dg-----------~i~vw~~~~~~~~~~~~~--~~~~h~~~-v~~~~~~~~~~~l~s~~~d-------- 263 (318)
.++++++.|+.++ .|.+| |..+..+..+. .+. ... -.++...|++++++.|+.+
T Consensus 409 ~~~~i~v~GG~~~~~~~~~~~~~~~v~~y--d~~~~~W~~~~~~~mp--~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~ 484 (656)
T 1k3i_A 409 VKGKILTFGGSPDYQDSDATTNAHIITLG--EPGTSPNTVFASNGLY--FARTFHTSVVLPDGSTFITGGQRRGIPFEDS 484 (656)
T ss_dssp TTTEEEEECCBSSSSSSBCCCCEEEEECC--STTSCCEEEECTTCCS--SCCBSCEEEECTTSCEEEECCBSBCCTTCCC
T ss_pred CCCeEEEEeCCCCCCCCCcCCcceEEEcC--CCCCCCeeEEccCCCC--CCcccCCeEECCCCCEEEECCcccCcCcCCC
Confidence 3678888887543 56676 66666664443 221 122 2345567899999999865
Q ss_pred ---CcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 264 ---NFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 264 ---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
..+.+||..++....+...+.. ...| ....+.|||++++.|.
T Consensus 485 ~~~~~v~~ydp~t~~W~~~~~~~~~--------R~~h----s~a~ll~dg~v~v~GG 529 (656)
T 1k3i_A 485 TPVFTPEIYVPEQDTFYKQNPNSIV--------RVYH----SISLLLPDGRVFNGGG 529 (656)
T ss_dssp SBCCCCEEEEGGGTEEEECCCCSSC--------CCTT----EEEEECTTSCEEEEEC
T ss_pred CcccceEEEcCCCCceeecCCCCCc--------cccc----cHhhcCCCcEEEecCC
Confidence 5689999988766544322211 1112 2344568998888774
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=0.00017 Score=59.87 Aligned_cols=150 Identities=9% Similarity=-0.036 Sum_probs=86.9
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEee-----------------eccccccEEEEEeeeecCCCCC-
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGL-----------------FQAHNSWITSISLAVLSSDSSN- 145 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~h~~~v~~~~~~p~~~~~~~- 145 (318)
+++++++..++.|..|+..+++. ..... ..........+++ .+
T Consensus 30 g~~l~v~~~~~~i~~~~~~~~~~------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~-------~~~ 90 (322)
T 2fp8_A 30 NKGFYTSVQDGRVIKYEGPNSGF------------VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISY-------NLQ 90 (322)
T ss_dssp CSSEEEECTTSEEEEECCTTTCE------------EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEE-------ETT
T ss_pred CCEEEEEcCCCeEEEECCCCCce------------EEEecccccccccccccccchhccccCCCCceEEE-------cCC
Confidence 38788888899999998876432 11110 0011235788999 65
Q ss_pred CCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCC-CceEEEEEeC--------
Q 021036 146 PQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSP-RLMLLAVGKG-------- 216 (318)
Q Consensus 146 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~-~~~~l~~~~~-------- 216 (318)
++++ +.+...+.|..+|..+++.. .+..... .......+.+++. + +|.+.++...
T Consensus 91 ~g~l-~v~d~~~~i~~~d~~~g~~~-~~~~~~~---------~~~~~~p~~i~~d-----~~~G~l~v~d~~~~~~~~~~ 154 (322)
T 2fp8_A 91 NNQL-YIVDCYYHLSVVGSEGGHAT-QLATSVD---------GVPFKWLYAVTVD-----QRTGIVYFTDVSTLYDDRGV 154 (322)
T ss_dssp TTEE-EEEETTTEEEEECTTCEECE-EEESEET---------TEECSCEEEEEEC-----TTTCCEEEEESCSSCCTTCH
T ss_pred CCcE-EEEECCCCEEEEeCCCCEEE-EecccCC---------CCcccccceEEEe-----cCCCEEEEECCccccccccc
Confidence 5654 44444455888887655322 1111000 0011245678888 8 8877666432
Q ss_pred ---------CCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEe-cCCCcEEEEEecC
Q 021036 217 ---------SGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSC-SQDNFVRSWIFHG 273 (318)
Q Consensus 217 ---------dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~d~~v~iwd~~~ 273 (318)
++.|..| +..+++...+ .........++++|+|++|+.+ ..++.|..|++.+
T Consensus 155 ~~~~~~~~~~g~v~~~--d~~~~~~~~~---~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~ 216 (322)
T 2fp8_A 155 QQIMDTSDKTGRLIKY--DPSTKETTLL---LKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEG 216 (322)
T ss_dssp HHHHHHTCCCEEEEEE--ETTTTEEEEE---EEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred ceehcccCCCceEEEE--eCCCCEEEEe---ccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence 2556666 6555543222 1122345679999999855544 5678999999875
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.32 E-value=0.00013 Score=64.81 Aligned_cols=216 Identities=10% Similarity=-0.091 Sum_probs=123.0
Q ss_pred ccceEEeeCCCceeEeecCCCCCCCceecch------hccccccccceee--------eeccccc--CC---CCcccccc
Q 021036 17 THPTVAASKSKGNSITKIPSNCCLPLITADQ------YASRSAMLHSLAV--------AWSPVLR--LS---SKKYPVPQ 77 (318)
Q Consensus 17 ~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~~~~--------~w~p~~~--~~---~~~~~v~~ 77 (318)
..-+.+|+.+|.++++=+++++.+..+..-. ++.......++.- -....++ +. .|--.+..
T Consensus 15 ~~~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~ 94 (595)
T 1fwx_A 15 YYGFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSF 94 (595)
T ss_dssp EEEEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEE
T ss_pred EEEEeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCC
Confidence 3457899999999999999988776654321 1111100000000 0001111 00 01112222
Q ss_pred cCCCCCccEEEEecC-CCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCC-CCCcEEEEEe-
Q 021036 78 NGSSNWFSILAVGGR-SGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSS-NPQVLLVTGS- 154 (318)
Q Consensus 78 ~~~s~~~~~l~~g~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~-~~~~~l~s~~- 154 (318)
.+-.++|++++.... ++.|.+.|+.+.++. +.+ .+.. ......+++ .. |+++++++++
T Consensus 95 t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~-----------~ii-~ip~-g~~phg~~~------~~~p~~~~v~~~~~ 155 (595)
T 1fwx_A 95 TEGKYDGRFLFMNDKANTRVARVRCDVMKCD-----------AIL-EIPN-AKGIHGLRP------QKWPRSNYVFCNGE 155 (595)
T ss_dssp ETTEEEEEEEEEEETTTTEEEEEETTTTEEE-----------EEE-ECSS-CCSEEEEEE------CCSSBCSEEEEEEC
T ss_pred CCCCcCCCEEEEEcCCCCEEEEEECCCceEe-----------eEE-eCCC-CCCCcceee------eecCCCcEEEEecc
Confidence 233347787777654 556999999986532 111 3322 234677776 23 7888888884
Q ss_pred -----------------CCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCC
Q 021036 155 -----------------SDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGS 217 (318)
Q Consensus 155 -----------------~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~d 217 (318)
.++.+.+.|..+.+....+..... ...++++ |+|+++++.+.+
T Consensus 156 ~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~---------------pd~~~~s-----pdGk~~~vt~~~ 215 (595)
T 1fwx_A 156 DETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGN---------------LDNCDAD-----YEGKWAFSTSYN 215 (595)
T ss_dssp SCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSC---------------CCCEEEC-----SSSSEEEEEESC
T ss_pred cccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCC---------------ccceEEC-----CCCCEEEEEecC
Confidence 345789999998877776654221 2345676 788877777744
Q ss_pred C--------------------------------------cEEEeeeccCCCeeeE-eeeeecccCceeEEEEcCCCCEEE
Q 021036 218 G--------------------------------------SFDLWKCDISCNKFDK-VGSYNAHDQVVTGLAWAFDGCCLY 258 (318)
Q Consensus 218 g--------------------------------------~i~vw~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~ 258 (318)
. .|.+. |.++.+.+. +..+.. .....++.++|||++++
T Consensus 216 se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VI--D~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~ 292 (595)
T 1fwx_A 216 SEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVV--DGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLC 292 (595)
T ss_dssp TTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEE--ECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEE
T ss_pred cccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEE--eCcccCCceeEEEEec-CCCceEEEEcCCCCEEE
Confidence 3 24444 343311012 222322 22456799999999765
Q ss_pred E-ecCCCcEEEEEecCC
Q 021036 259 S-CSQDNFVRSWIFHGN 274 (318)
Q Consensus 259 s-~~~d~~v~iwd~~~~ 274 (318)
+ +..+.+|.++|+.+.
T Consensus 293 V~~~~s~~VsVid~~~~ 309 (595)
T 1fwx_A 293 VAGKLSPTVTVLDVTRF 309 (595)
T ss_dssp EECTTSSBEEEEEGGGH
T ss_pred EeCCCCCeEEEEECccc
Confidence 5 457789999999864
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=3e-05 Score=65.63 Aligned_cols=68 Identities=9% Similarity=-0.183 Sum_probs=50.3
Q ss_pred cEEEEecCCC----cEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEe------
Q 021036 85 SILAVGGRSG----KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS------ 154 (318)
Q Consensus 85 ~~l~~g~~dg----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~------ 154 (318)
..+++-..++ .|.+.|..++ +.+.++..-..+ .+.+ ++++++++++.
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t~--------------~v~~~i~vG~~P--~i~~-------spDg~~lyVan~~~~r~ 89 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGCG--------------VTLGHSLGAFLS--LAVA-------GHSGSDFALASTSFARS 89 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTTT--------------EEEEEEEECTTC--EEEE-------CTTSSCEEEEEEEETTT
T ss_pred eEEEECCccCCccceEEEEECCCC--------------eEEEEEeCCCCC--ceEE-------CCCCCEEEEEccccccc
Confidence 3444444454 7889999885 455666544456 6999 89998888886
Q ss_pred ----CCCcEEEEECCCcceeeeecc
Q 021036 155 ----SDGSVRIWDGYIQELQKSAEA 175 (318)
Q Consensus 155 ----~d~~v~iwd~~~~~~~~~~~~ 175 (318)
.++.|.+||+.+++....+..
T Consensus 90 ~~G~~~~~VsviD~~T~~vv~~I~v 114 (368)
T 1mda_H 90 AKGKRTDYVEVFDPVTFLPIADIEL 114 (368)
T ss_dssp TSSSEEEEEEEECTTTCCEEEEEEE
T ss_pred ccCCCCCEEEEEECCCCCEEEEEEC
Confidence 368999999999998888754
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00021 Score=65.85 Aligned_cols=166 Identities=17% Similarity=0.084 Sum_probs=94.7
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeecc--ccccEEEEEeeeecCCCCCCCcEEEEEe------C
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQA--HNSWITSISLAVLSSDSSNPQVLLVTGS------S 155 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~p~~~~~~~~~~~l~s~~------~ 155 (318)
+..|+.++.|+.|..+|.++|+. +-.+.. +......+...|. -.++. ++.++ .
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~--------------~W~~~~~~~~~~~~~~~~sP~----v~~g~-v~vg~~~~~~~~ 181 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQR--------------AWSVDTRADHKRSYTITGAPR----VVNGK-VVIGNGGAEFGV 181 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCE--------------EEEEECCSCTTSCCBCCSCCE----EETTE-EEECCBCTTTCC
T ss_pred CCEEEEEccCCEEEEEECCCCCE--------------eeeecCcCCCCCCccccCCcE----EECCE-EEEEeCCCccCC
Confidence 46788899999999999999763 222221 1111111111010 01343 44443 3
Q ss_pred CCcEEEEECCCcceeeeecccc-cccccc--e------eee--------eecccceeEEEEeeccCCCCceEEEEEeCCC
Q 021036 156 DGSVRIWDGYIQELQKSAEAHC-VPFSLL--K------EVV--------TVNTVPISVLSLILPVQSPRLMLLAVGKGSG 218 (318)
Q Consensus 156 d~~v~iwd~~~~~~~~~~~~~~-~~~~~~--~------~~~--------~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg 218 (318)
++.|..||..+|+.+..+.... .+.... . ... .........++++ |+..+++.+..++
T Consensus 182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d-----~~~~~vy~~~~~g 256 (689)
T 1yiq_A 182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYD-----PELNLLYIGVGNG 256 (689)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEE-----TTTTEEEEECCCE
T ss_pred CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEc-----CCCCEEEEeCCCC
Confidence 7899999999999887764211 000000 0 000 0111122357787 7888888888776
Q ss_pred c-------------------EEEeeeccCCCeeeEeeeeec--cc-------CceeEEEEcCCCC---EEEEecCCCcEE
Q 021036 219 S-------------------FDLWKCDISCNKFDKVGSYNA--HD-------QVVTGLAWAFDGC---CLYSCSQDNFVR 267 (318)
Q Consensus 219 ~-------------------i~vw~~~~~~~~~~~~~~~~~--h~-------~~v~~~~~~~~~~---~l~s~~~d~~v~ 267 (318)
. |..+ |..+++ .+..++. |. .++.......+|+ .++.++.+|.++
T Consensus 257 ~~w~~~~~~~~~gd~~y~~~v~Al--D~~TG~--~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~ 332 (689)
T 1yiq_A 257 SLWDPKWRSQAKGDNLFLSSIVAV--NADTGE--YVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFY 332 (689)
T ss_dssp ESSCHHHHHTTCSCCTTTTEEEEE--ETTTCC--EEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEE
T ss_pred CccccCCCCCCCCCceeeeeEEEE--EccCCc--eeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEE
Confidence 3 7776 777777 4444432 22 1122222223564 788999999999
Q ss_pred EEEecCCcee
Q 021036 268 SWIFHGNSLS 277 (318)
Q Consensus 268 iwd~~~~~~~ 277 (318)
++|..++++.
T Consensus 333 ~lD~~tG~~l 342 (689)
T 1yiq_A 333 VIDRATGELL 342 (689)
T ss_dssp EEETTTCCEE
T ss_pred EEECCCCCEe
Confidence 9999988765
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00014 Score=61.82 Aligned_cols=135 Identities=9% Similarity=-0.058 Sum_probs=85.1
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEEC
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDG 164 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~ 164 (318)
..++.++.++.+..+|.++++. +.... ......+.. .+..++.++.++.|..+|.
T Consensus 240 ~~v~~~~~~g~l~~~d~~tG~~--------------~w~~~--~~~~~~~~~---------~~~~l~~~~~~g~l~~~d~ 294 (376)
T 3q7m_A 240 GVVFALAYNGNLTALDLRSGQI--------------MWKRE--LGSVNDFIV---------DGNRIYLVDQNDRVMALTI 294 (376)
T ss_dssp TEEEEECTTSCEEEEETTTCCE--------------EEEEC--CCCEEEEEE---------ETTEEEEEETTCCEEEEET
T ss_pred CEEEEEecCcEEEEEECCCCcE--------------Eeecc--CCCCCCceE---------ECCEEEEEcCCCeEEEEEC
Confidence 6777788899999999988652 22222 223344444 3456788888999999999
Q ss_pred CCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCc
Q 021036 165 YIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQV 244 (318)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~ 244 (318)
.+++.......... ..+...... +..+++++.+|.++.+ |..+++ .+.........
T Consensus 295 ~tG~~~w~~~~~~~-------------~~~~~~~~~-------~~~l~v~~~~g~l~~~--d~~tG~--~~~~~~~~~~~ 350 (376)
T 3q7m_A 295 DGGVTLWTQSDLLH-------------RLLTSPVLY-------NGNLVVGDSEGYLHWI--NVEDGR--FVAQQKVDSSG 350 (376)
T ss_dssp TTCCEEEEECTTTT-------------SCCCCCEEE-------TTEEEEECTTSEEEEE--ETTTCC--EEEEEECCTTC
T ss_pred CCCcEEEeecccCC-------------CcccCCEEE-------CCEEEEEeCCCeEEEE--ECCCCc--EEEEEecCCCc
Confidence 99987765541111 012222222 4567888889999998 666776 34444332233
Q ss_pred eeE-EEEcCCCCEEEEecCCCcEEEEE
Q 021036 245 VTG-LAWAFDGCCLYSCSQDNFVRSWI 270 (318)
Q Consensus 245 v~~-~~~~~~~~~l~s~~~d~~v~iwd 270 (318)
+.. ... .+..|+.++.+|.|..|+
T Consensus 351 ~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 351 FQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp BCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred ceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 322 222 245788888999999886
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.21 E-value=3.1e-05 Score=64.31 Aligned_cols=98 Identities=10% Similarity=0.059 Sum_probs=59.9
Q ss_pred CcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeec
Q 021036 147 QVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCD 226 (318)
Q Consensus 147 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~ 226 (318)
+..|..++.++.|..+|.. ++......... ..+..+... +++. ++.++.++.|..| +
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~--------------~~~~~~~~~-----~~g~-l~vgt~~~~l~~~--d 163 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKK--------------AIYATPIVS-----EDGT-IYVGSNDNYLYAI--N 163 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSS--------------CCCSCCEEC-----TTSC-EEEECTTSEEEEE--C
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCC--------------ceeeeeEEc-----CCCE-EEEEcCCCEEEEE--C
Confidence 3457778888899999987 66555443221 123444554 5565 5556777888888 4
Q ss_pred cCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCC
Q 021036 227 ISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGN 274 (318)
Q Consensus 227 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 274 (318)
.. ++ ....+......+.++...+++.+++.. +.|..+| .++
T Consensus 164 ~~-g~--~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g 204 (330)
T 3hxj_A 164 PD-GT--EKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDG 204 (330)
T ss_dssp TT-SC--EEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTS
T ss_pred CC-CC--EeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCC
Confidence 44 43 233333344556777777777755443 7788888 443
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.20 E-value=0.00038 Score=64.02 Aligned_cols=163 Identities=15% Similarity=0.052 Sum_probs=96.0
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccc-c----ccEEEEEeeeecCCCCCCCcEEEEEeC---
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAH-N----SWITSISLAVLSSDSSNPQVLLVTGSS--- 155 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~----~~v~~~~~~p~~~~~~~~~~~l~s~~~--- 155 (318)
+..|+.++.|+.|..+|.++++. +-.+... . ..+.+ .|. ..++ .++.++.
T Consensus 128 ~~~v~v~~~dg~l~alD~~tG~~--------------~W~~~~~~~~~~~~~~~~---~p~----v~~~-~v~v~~~~~~ 185 (677)
T 1kb0_A 128 KGKVYVGAWDGRLIALDAATGKE--------------VWHQNTFEGQKGSLTITG---APR----VFKG-KVIIGNGGAE 185 (677)
T ss_dssp TTEEEEECTTSEEEEEETTTCCE--------------EEEEETTTTCCSSCBCCS---CCE----EETT-EEEECCBCTT
T ss_pred CCEEEEEcCCCEEEEEECCCCCE--------------EeeecCCcCcCcCccccc---CcE----EECC-EEEEEecccc
Confidence 46888889999999999998763 2333222 1 11111 000 1133 4555543
Q ss_pred ---CCcEEEEECCCcceeeeeccccccc-ccc---------------eeee--eecccceeEEEEeeccCCCCceEEEEE
Q 021036 156 ---DGSVRIWDGYIQELQKSAEAHCVPF-SLL---------------KEVV--TVNTVPISVLSLILPVQSPRLMLLAVG 214 (318)
Q Consensus 156 ---d~~v~iwd~~~~~~~~~~~~~~~~~-~~~---------------~~~~--~~~~~~v~~l~~~~~~~~~~~~~l~~~ 214 (318)
++.|+.+|..+|+.+..+....... ... .... .........++++ +++.+++.+
T Consensus 186 ~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d-----~~~~~vy~~ 260 (677)
T 1kb0_A 186 YGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFD-----AELNTMYVG 260 (677)
T ss_dssp TCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEE-----TTTTEEEEE
T ss_pred cCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEc-----CCCCEEEEE
Confidence 7999999999999888765432210 000 0000 0111222456787 788888888
Q ss_pred eCCC-------------------cEEEeeeccCCCeeeEeeeeec--cc-------CceeEEEEcCCC---CEEEEecCC
Q 021036 215 KGSG-------------------SFDLWKCDISCNKFDKVGSYNA--HD-------QVVTGLAWAFDG---CCLYSCSQD 263 (318)
Q Consensus 215 ~~dg-------------------~i~vw~~~~~~~~~~~~~~~~~--h~-------~~v~~~~~~~~~---~~l~s~~~d 263 (318)
..++ .|..+ |..+++ .+..++. |. ....-+....+| ..++.++.+
T Consensus 261 ~~~~~~w~~~~~~~~~gd~~~~~sv~Al--D~~TG~--~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~ 336 (677)
T 1kb0_A 261 TGNGSPWSHKVRSPKGGDNLYLASIVAL--DPDTGK--YKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKN 336 (677)
T ss_dssp CCCEESSCHHHHSTTCCCCTTTTEEEEE--CTTTCC--EEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTT
T ss_pred CCCCccccCCCCCccCCCCeeeEEEEEE--ECCCCC--EEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCC
Confidence 7664 36666 777777 3333332 31 112223333467 678999999
Q ss_pred CcEEEEEecCCcee
Q 021036 264 NFVRSWIFHGNSLS 277 (318)
Q Consensus 264 ~~v~iwd~~~~~~~ 277 (318)
|.++++|..++++.
T Consensus 337 G~l~~lD~~tG~~l 350 (677)
T 1kb0_A 337 GFFFVLDRTNGKFI 350 (677)
T ss_dssp SEEEEEETTTCCEE
T ss_pred CEEEEEECCCCCEe
Confidence 99999999988764
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=0.00096 Score=55.29 Aligned_cols=116 Identities=14% Similarity=0.070 Sum_probs=70.0
Q ss_pred cEEEEEeeeecCCCCC-CCcEEEEEeC-----------------CCcEEEEECCCcceeeeecccccccccceeeeeecc
Q 021036 130 WITSISLAVLSSDSSN-PQVLLVTGSS-----------------DGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNT 191 (318)
Q Consensus 130 ~v~~~~~~p~~~~~~~-~~~~l~s~~~-----------------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (318)
..+.+++ .+ +|+++++-.. ++.|..+|..+++....... .
T Consensus 127 ~p~~i~~-------d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~---------------~ 184 (322)
T 2fp8_A 127 WLYAVTV-------DQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKE---------------L 184 (322)
T ss_dssp CEEEEEE-------CTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEE---------------E
T ss_pred ccceEEE-------ecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccC---------------C
Confidence 4678888 77 7877766432 36688888765543221111 1
Q ss_pred cceeEEEEeeccCCCCceEEEEE-eCCCcEEEeeeccCC-CeeeEeeeeecccCceeEEEEcCCCCEEEEecC-------
Q 021036 192 VPISVLSLILPVQSPRLMLLAVG-KGSGSFDLWKCDISC-NKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQ------- 262 (318)
Q Consensus 192 ~~v~~l~~~~~~~~~~~~~l~~~-~~dg~i~vw~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~------- 262 (318)
...+.++++ ++++.|+.+ ..++.|.+|+++... +..+.... ..+ ...++++++|.+.++...
T Consensus 185 ~~p~gia~~-----~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~---~~g-P~gi~~d~~G~l~va~~~~~~~~~~ 255 (322)
T 2fp8_A 185 HVPGGAEVS-----ADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK---IPN-PGNIKRNADGHFWVSSSEELDGNMH 255 (322)
T ss_dssp SCCCEEEEC-----TTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE---CSS-EEEEEECTTSCEEEEEEEETTSSTT
T ss_pred ccCcceEEC-----CCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe---CCC-CCCeEECCCCCEEEEecCccccccc
Confidence 134678998 898866555 556889998554211 22222222 223 678999999986666544
Q ss_pred ---CCcEEEEEecCCce
Q 021036 263 ---DNFVRSWIFHGNSL 276 (318)
Q Consensus 263 ---d~~v~iwd~~~~~~ 276 (318)
.+.|..+|......
T Consensus 256 ~~~~~~v~~~d~~G~~~ 272 (322)
T 2fp8_A 256 GRVDPKGIKFDEFGNIL 272 (322)
T ss_dssp SCEEEEEEEECTTSCEE
T ss_pred CCCccEEEEECCCCCEE
Confidence 46688887654333
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.14 E-value=0.0019 Score=53.48 Aligned_cols=194 Identities=10% Similarity=-0.029 Sum_probs=110.1
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEE
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVS 97 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~ 97 (318)
.|.+.-+....|+..++........+..... . ....+.|++.. +.++.+-...+.|.
T Consensus 4 ~p~ll~~~~~~I~~i~l~~~~~~~~~~~~~~---~---~~~~ld~d~~~-----------------~~lyw~D~~~~~I~ 60 (318)
T 3sov_A 4 APLLLYANRRDLRLVDATNGKENATIVVGGL---E---DAAAVDFVFSH-----------------GLIYWSDVSEEAIK 60 (318)
T ss_dssp CCEEEEECEEEEEEEETTCTTSCCEEEEEEE---E---EEEEEEEEGGG-----------------TEEEEEETTTTEEE
T ss_pred ccEEEEEccCeEEEEECCCCceEEEEEecCC---C---ccEEEEEEeCC-----------------CEEEEEECCCCcEE
Confidence 3455556678899999987642222222111 1 13348899876 35666667778899
Q ss_pred EEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCC-CCcEEEEEeCCCcEEEEECCCcceeeeeccc
Q 021036 98 LWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSN-PQVLLVTGSSDGSVRIWDGYIQELQKSAEAH 176 (318)
Q Consensus 98 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 176 (318)
.++.+.+... . ..+.........+++ .. .+.++++-...+.|.++++........+..
T Consensus 61 r~~~~g~~~~-----------~--~~~~~~l~~p~glav-------d~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~- 119 (318)
T 3sov_A 61 RTEFNKTESV-----------Q--NVVVSGLLSPDGLAC-------DWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQ- 119 (318)
T ss_dssp EEETTSSSCC-----------C--EEEEECCSCCCEEEE-------ETTTTEEEEEETTTTEEEEEETTSCSCEEEECS-
T ss_pred EEEccCCCce-----------E--EEEcCCCCCccEEEE-------EcCCCeEEEEECCCCEEEEEECCCCcEEEEEeC-
Confidence 8988764210 0 111111234556777 43 555666666678899999875432221111
Q ss_pred ccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe--CCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCC
Q 021036 177 CVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK--GSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDG 254 (318)
Q Consensus 177 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 254 (318)
.......++++ |.+..|+.+. ..+.|...+.+ ......+ ....-.....++++|++
T Consensus 120 -------------~~~~P~giavd-----p~~g~ly~td~~~~~~I~r~~~d--G~~~~~~--~~~~l~~Pnglavd~~~ 177 (318)
T 3sov_A 120 -------------ELDQPRAIALD-----PSSGFMYWTDWGEVPKIERAGMD--GSSRFII--INSEIYWPNGLTLDYEE 177 (318)
T ss_dssp -------------SCSSEEEEEEE-----GGGTEEEEEECSSSCEEEEEETT--SCSCEEE--ECSSCSCEEEEEEETTT
T ss_pred -------------CCCCccEEEEe-----CCCCEEEEEecCCCCEEEEEEcC--CCCeEEE--EECCCCCccEEEEeccC
Confidence 11245788998 6655555544 25677776443 3221121 11222356889999976
Q ss_pred CEEE-EecCCCcEEEEEecCCcee
Q 021036 255 CCLY-SCSQDNFVRSWIFHGNSLS 277 (318)
Q Consensus 255 ~~l~-s~~~d~~v~iwd~~~~~~~ 277 (318)
..|. +-+..+.|..+|+.+....
T Consensus 178 ~~lY~aD~~~~~I~~~d~dG~~~~ 201 (318)
T 3sov_A 178 QKLYWADAKLNFIHKSNLDGTNRQ 201 (318)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCE
T ss_pred CEEEEEECCCCEEEEEcCCCCceE
Confidence 6554 4456678999998764443
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00052 Score=58.17 Aligned_cols=146 Identities=9% Similarity=0.041 Sum_probs=87.9
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeecccc-------ccEEEEEeeeecCCCCCCCcEEEEEeCC
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHN-------SWITSISLAVLSSDSSNPQVLLVTGSSD 156 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-------~~v~~~~~~p~~~~~~~~~~~l~s~~~d 156 (318)
+..++.+..+|.|..+|..+++.. ....... ..+..+.-.|. ..+..++.++.+
T Consensus 188 ~~~v~~g~~~g~l~~~d~~tG~~~--------------w~~~~~~~~~~~~~~~~~~~~~~p~-----~~~~~v~~~~~~ 248 (376)
T 3q7m_A 188 FGAAVVGGDNGRVSAVLMEQGQMI--------------WQQRISQATGSTEIDRLSDVDTTPV-----VVNGVVFALAYN 248 (376)
T ss_dssp TTEEEECCTTTEEEEEETTTCCEE--------------EEEECCC-----------CCCCCCE-----EETTEEEEECTT
T ss_pred CCEEEEEcCCCEEEEEECCCCcEE--------------EEEecccCCCCcccccccccCCCcE-----EECCEEEEEecC
Confidence 457788888999999999887532 1211110 00000111010 123567778889
Q ss_pred CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEee
Q 021036 157 GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVG 236 (318)
Q Consensus 157 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 236 (318)
+.+..+|..+++........ ....+.. ++..++.++.++.+..+ |..+++ .+.
T Consensus 249 g~l~~~d~~tG~~~w~~~~~----------------~~~~~~~-------~~~~l~~~~~~g~l~~~--d~~tG~--~~w 301 (376)
T 3q7m_A 249 GNLTALDLRSGQIMWKRELG----------------SVNDFIV-------DGNRIYLVDQNDRVMAL--TIDGGV--TLW 301 (376)
T ss_dssp SCEEEEETTTCCEEEEECCC----------------CEEEEEE-------ETTEEEEEETTCCEEEE--ETTTCC--EEE
T ss_pred cEEEEEECCCCcEEeeccCC----------------CCCCceE-------ECCEEEEEcCCCeEEEE--ECCCCc--EEE
Confidence 99999999999877654421 1223333 34567777788999998 666766 333
Q ss_pred eeec-ccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCcee
Q 021036 237 SYNA-HDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLS 277 (318)
Q Consensus 237 ~~~~-h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 277 (318)
.... ....+..... .+..|+.++.+|.|..+|..+++..
T Consensus 302 ~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~ 341 (376)
T 3q7m_A 302 TQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFV 341 (376)
T ss_dssp EECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEE
T ss_pred eecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEE
Confidence 3331 1122222222 2567888889999999999887764
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00084 Score=61.67 Aligned_cols=56 Identities=13% Similarity=0.108 Sum_probs=38.3
Q ss_pred CCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCcee
Q 021036 217 SGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLS 277 (318)
Q Consensus 217 dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 277 (318)
+|.|..| |..+++ .+.+... ..+.....+...+.+++.++.|+.++.||.++++..
T Consensus 437 ~g~l~A~--D~~tG~--~~W~~~~-~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l 492 (668)
T 1kv9_A 437 SGALLAW--DPVKQK--AAWKVPY-PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL 492 (668)
T ss_dssp EEEEEEE--ETTTTE--EEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cceEEEE--eCCCCc--EEEEccC-CCCCcCceeEeCCCEEEEECCcccchhhhhhcChhh
Confidence 3678888 667776 3434332 223333445556778889999999999999987765
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.05 E-value=0.0039 Score=52.32 Aligned_cols=189 Identities=8% Similarity=-0.007 Sum_probs=104.2
Q ss_pred ceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEE
Q 021036 19 PTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSL 98 (318)
Q Consensus 19 ~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i 98 (318)
+.+.-+....|+..++........+. .. .....++|++.. +.++++-...+.|..
T Consensus 45 ~~ll~~~~~~I~~i~~~g~~~~~~~~--~~------~~~~~l~~d~~~-----------------~~ly~~D~~~~~I~r 99 (349)
T 3v64_C 45 PVLLFANRIDIRQVLPHRSEYTLLLN--NL------ENAIALDFHHRR-----------------ELVFWSDVTLDRILR 99 (349)
T ss_dssp CEEEEECBSCEEEECTTSCCEEEEEC--SC------SCEEEEEEETTT-----------------TEEEEEETTTTEEEE
T ss_pred ceeEeecccceEEEeCCCCeeEEeec--CC------CceEEEEEeccc-----------------cEEEEEeccCCceEE
Confidence 33444455567766665443221111 10 112347787665 356666667788988
Q ss_pred EEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCC-CCcEEEEEeCCCcEEEEECCCcceeeeecccc
Q 021036 99 WRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSN-PQVLLVTGSSDGSVRIWDGYIQELQKSAEAHC 177 (318)
Q Consensus 99 w~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 177 (318)
++.+.... + ..+.........+++ .+ .+.++++-...+.|.+.++........+...
T Consensus 100 ~~~~g~~~------------~--~~~~~~~~~p~glav-------d~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~- 157 (349)
T 3v64_C 100 ANLNGSNV------------E--EVVSTGLESPGGLAV-------DWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQS- 157 (349)
T ss_dssp EETTSCSC------------E--EEECSSCSCCCEEEE-------ETTTTEEEEEETTTTEEEEEETTSCSCEEEECTT-
T ss_pred EecCCCCc------------e--EEEeCCCCCccEEEE-------ecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCC-
Confidence 98876431 1 111212233466777 44 5556666666788999998754322211111
Q ss_pred cccccceeeeeecccceeEEEEeeccCCCC-ceEEEEEeCC-CcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCC
Q 021036 178 VPFSLLKEVVTVNTVPISVLSLILPVQSPR-LMLLAVGKGS-GSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGC 255 (318)
Q Consensus 178 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~-~~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 255 (318)
......++++ |. +.++.+-..+ +.|..++++ ......+ ....-.....++++|++.
T Consensus 158 -------------l~~P~~iavd-----p~~g~ly~td~~~~~~I~r~~~d--G~~~~~~--~~~~~~~PnGla~d~~~~ 215 (349)
T 3v64_C 158 -------------LEKPRAIALH-----PMEGTIYWTDWGNTPRIEASSMD--GSGRRII--ADTHLFWPNGLTIDYAGR 215 (349)
T ss_dssp -------------CSCEEEEEEE-----TTTTEEEEEECSSSCEEEEEETT--SCSCEES--CCSSCSCEEEEEEETTTT
T ss_pred -------------CCCcceEEEe-----cCcCeEEEeccCCCCEEEEEeCC--CCCcEEE--EECCCCCcceEEEeCCCC
Confidence 1245788998 64 5555555444 677777443 3221121 112234568899998766
Q ss_pred EEE-EecCCCcEEEEEecCCce
Q 021036 256 CLY-SCSQDNFVRSWIFHGNSL 276 (318)
Q Consensus 256 ~l~-s~~~d~~v~iwd~~~~~~ 276 (318)
.|. +-...+.|..+|+.+...
T Consensus 216 ~lY~aD~~~~~I~~~~~dG~~~ 237 (349)
T 3v64_C 216 RMYWVDAKHHVIERANLDGSHR 237 (349)
T ss_dssp EEEEEETTTTEEEEEETTSCSC
T ss_pred EEEEEECCCCEEEEEeCCCCce
Confidence 554 445567899999876443
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.02 E-value=0.004 Score=51.14 Aligned_cols=193 Identities=10% Similarity=-0.033 Sum_probs=98.4
Q ss_pred cccCCCCCccEEEEecCCC--cEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEE
Q 021036 76 PQNGSSNWFSILAVGGRSG--KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTG 153 (318)
Q Consensus 76 ~~~~~s~~~~~l~~g~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~ 153 (318)
..++++++++++++..... .|..++..+++. ..+..+. .......++. .+++..+++-
T Consensus 75 ~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~------------~~~~~~~-~~~~~~g~~~-------~~~~~~~v~d 134 (306)
T 2p4o_A 75 SGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV------------ETLLTLP-DAIFLNGITP-------LSDTQYLTAD 134 (306)
T ss_dssp EEEEECTTSCEEEEEECTTSCEEEEEECTTSCE------------EEEEECT-TCSCEEEEEE-------SSSSEEEEEE
T ss_pred eeEEEcCCCcEEEEeccCCcceEEEEcCCCCeE------------EEEEeCC-CccccCcccc-------cCCCcEEEEE
Confidence 3445555558766654332 355566666542 1222221 1222345554 3455555555
Q ss_pred eCCCcEEEEECCCcce-eeeecccccccccceeeeeecccceeEEEEeeccCCCCceEE-EEEeCCCcEEEeeeccCCCe
Q 021036 154 SSDGSVRIWDGYIQEL-QKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLL-AVGKGSGSFDLWKCDISCNK 231 (318)
Q Consensus 154 ~~d~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l-~~~~~dg~i~vw~~~~~~~~ 231 (318)
..++.|..+|...++. +............. ......+.+ + ++++.| ++-...+.|..|+++.. ++
T Consensus 135 ~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~-----~~~~~pngi--s-----~dg~~lyv~d~~~~~I~~~~~~~~-g~ 201 (306)
T 2p4o_A 135 SYRGAIWLIDVVQPSGSIWLEHPMLARSNSE-----SVFPAANGL--K-----RFGNFLYVSNTEKMLLLRIPVDST-DK 201 (306)
T ss_dssp TTTTEEEEEETTTTEEEEEEECGGGSCSSTT-----CCSCSEEEE--E-----EETTEEEEEETTTTEEEEEEBCTT-SC
T ss_pred CCCCeEEEEeCCCCcEeEEEECCcccccccc-----CCCCcCCCc--C-----cCCCEEEEEeCCCCEEEEEEeCCC-CC
Confidence 5688999999765421 11111000000000 001123344 5 666554 44456788999966532 22
Q ss_pred eeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeee-cCCCCCCccccccCCCcceeeeEEEEc---
Q 021036 232 FDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVS-IPTNTPGLQSCTDLPDAFVSCLGMAVS--- 307 (318)
Q Consensus 232 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~v~~v~~s--- 307 (318)
......+. .......++++++|+++++....+.|.++|.. +....+. ..... ....+++|.
T Consensus 202 ~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~-------------~~p~~~a~~g~~ 266 (306)
T 2p4o_A 202 PGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGV-------------IGSTAVAFGQTE 266 (306)
T ss_dssp BCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTC-------------TTEEEEEECCST
T ss_pred CCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeeccccc-------------CCceEEEEeccc
Confidence 11111121 11345778999999887777778899999875 3332221 11111 146899998
Q ss_pred CCCcEEEEE
Q 021036 308 PGNLVVAMV 316 (318)
Q Consensus 308 p~~~~l~~~ 316 (318)
||+..|..+
T Consensus 267 ~d~~~LyVt 275 (306)
T 2p4o_A 267 GDCTAIYVV 275 (306)
T ss_dssp TTTTEEEEE
T ss_pred CCCCEEEEE
Confidence 887665543
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.01 E-value=0.0035 Score=53.41 Aligned_cols=189 Identities=8% Similarity=-0.009 Sum_probs=103.6
Q ss_pred ceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEE
Q 021036 19 PTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSL 98 (318)
Q Consensus 19 ~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i 98 (318)
+.+.-+....|+..++........+. ... ....++|++.. +.++++-...+.|..
T Consensus 88 ~~l~~~~~~~I~~i~~~~~~~~~~~~--~~~------~~~gl~~d~~~-----------------~~ly~~D~~~~~I~r 142 (386)
T 3v65_B 88 PVLLFANRIDIRQVLPHRSEYTLLLN--NLE------NAIALDFHHRR-----------------ELVFWSDVTLDRILR 142 (386)
T ss_dssp CEEEEECBSCEEEECTTSCCCEEEEC--SCS------CEEEEEEETTT-----------------TEEEEEETTTTEEEE
T ss_pred ceeEeecCccceeeccCCCcEEEEec--CCC------ccEEEEEecCC-----------------CeEEEEeCCCCcEEE
Confidence 34445555677777776554322221 111 12347888765 356666667788998
Q ss_pred EEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCC-CCcEEEEEeCCCcEEEEECCCcceeeeecccc
Q 021036 99 WRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSN-PQVLLVTGSSDGSVRIWDGYIQELQKSAEAHC 177 (318)
Q Consensus 99 w~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 177 (318)
++.+... ....+.........+++ .+ .+.++++-...+.|.+.++........+..
T Consensus 143 ~~~~g~~--------------~~~~~~~~~~~p~glav-------d~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~-- 199 (386)
T 3v65_B 143 ANLNGSN--------------VEEVVSTGLESPGGLAV-------DWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQ-- 199 (386)
T ss_dssp EETTSCC--------------EEEEECSSCSCCCCEEE-------ETTTTEEEEEETTTTEEEECBTTSCSCEEEECS--
T ss_pred EecCCCC--------------cEEEEeCCCCCccEEEE-------EeCCCeEEEEcCCCCeEEEEeCCCCceEEeecC--
Confidence 9887643 11112212223456677 43 455556666677888888764332221111
Q ss_pred cccccceeeeeecccceeEEEEeeccCCCCce-EEEEEeCC-CcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCC
Q 021036 178 VPFSLLKEVVTVNTVPISVLSLILPVQSPRLM-LLAVGKGS-GSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGC 255 (318)
Q Consensus 178 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~-~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 255 (318)
.......++++ |.+. ++++-... +.|..++. .......+ ....-.....|+++|++.
T Consensus 200 ------------~l~~P~giavd-----p~~g~ly~td~~~~~~I~r~~~--dG~~~~~~--~~~~~~~PnGlavd~~~~ 258 (386)
T 3v65_B 200 ------------SLEKPRAIALH-----PMEGTIYWTDWGNTPRIEASSM--DGSGRRII--ADTHLFWPNGLTIDYAGR 258 (386)
T ss_dssp ------------SCSCEEEEEEE-----TTTTEEEEEECSSSCEEEEEET--TSCSCEEE--ECSSCSCEEEEEEEGGGT
T ss_pred ------------CCCCCcEEEEE-----cCCCeEEEeccCCCCEEEEEeC--CCCCcEEE--EECCCCCeeeEEEeCCCC
Confidence 11245788998 6554 44444444 66777644 33221121 112234568899998766
Q ss_pred EEE-EecCCCcEEEEEecCCce
Q 021036 256 CLY-SCSQDNFVRSWIFHGNSL 276 (318)
Q Consensus 256 ~l~-s~~~d~~v~iwd~~~~~~ 276 (318)
.|. +-+..+.|..+|+.+...
T Consensus 259 ~lY~aD~~~~~I~~~d~dG~~~ 280 (386)
T 3v65_B 259 RMYWVDAKHHVIERANLDGSHR 280 (386)
T ss_dssp EEEEEETTTTEEEEECTTSCSC
T ss_pred EEEEEECCCCEEEEEeCCCCee
Confidence 554 445667899998876443
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0089 Score=56.08 Aligned_cols=191 Identities=9% Similarity=0.011 Sum_probs=111.2
Q ss_pred ccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeee------ccccccEEEEEeeeecCCCCCCCc
Q 021036 75 VPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLF------QAHNSWITSISLAVLSSDSSNPQV 148 (318)
Q Consensus 75 v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~------~~h~~~v~~~~~~p~~~~~~~~~~ 148 (318)
|.++..+++|++. .|+.++-|..|+..++... ....- .-....|.++.. ..+++
T Consensus 359 V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~~~~------------~~~~~~~~~~~~l~~~~v~~i~~-------d~~g~ 418 (795)
T 4a2l_A 359 VSCIVEDKDKNLW-IGTNDGGLNLYNPITQRFT------------SYTLQEDESARGIGSNNIKAVYV-------DEKKS 418 (795)
T ss_dssp EEEEEECTTSCEE-EEESSSCEEEECTTTCCEE------------EECCC------CCSCSCEEEEEE-------ETTTT
T ss_pred eEEEEECCCCCEE-EEECCCCeEEEcCCCCcEE------------EEecCCCCcccCCCCccEEEEEE-------cCCCC
Confidence 5555555555654 4667766888998765421 11100 012357899988 67787
Q ss_pred EEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccC
Q 021036 149 LLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDIS 228 (318)
Q Consensus 149 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~ 228 (318)
+|..|+.++-|..+|..+++......... ......|.++... ++|.+.+.. .+ -+.+| +..
T Consensus 419 ~lWigt~~~Gl~~~d~~~~~~~~~~~~~~----------~l~~~~v~~i~~d-----~~g~lwigt-~~-Gl~~~--~~~ 479 (795)
T 4a2l_A 419 LVYIGTHAGGLSILHRNSGQVENFNQRNS----------QLVNENVYAILPD-----GEGNLWLGT-LS-ALVRF--NPE 479 (795)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEECTTTS----------CCSCSCEEEEEEC-----SSSCEEEEE-SS-CEEEE--ETT
T ss_pred EEEEEeCcCceeEEeCCCCcEEEeecCCC----------CcCCCeeEEEEEC-----CCCCEEEEe-cC-ceeEE--eCC
Confidence 56677877889999988765433211100 0123367888877 677655544 44 47777 566
Q ss_pred CCeeeEeeee----ecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEE
Q 021036 229 CNKFDKVGSY----NAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGM 304 (318)
Q Consensus 229 ~~~~~~~~~~----~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v 304 (318)
++++...... .-....|.++..+++|.+.+... +-|..||..++.. .+....... .-....|.++
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~-~~~~~~~~~--------~l~~~~i~~i 548 (795)
T 4a2l_A 480 QRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI-QKASILPVS--------NVTKLFTNCI 548 (795)
T ss_dssp TTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE-EECCCSCSC--------GGGGSCEEEE
T ss_pred CCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE-EEecCCCCC--------CCCCCeeEEE
Confidence 6654333211 11235788999999988655443 4588899887665 322110000 0122467888
Q ss_pred EEcCCCcEEEE
Q 021036 305 AVSPGNLVVAM 315 (318)
Q Consensus 305 ~~sp~~~~l~~ 315 (318)
..+++|.+.+.
T Consensus 549 ~~d~~g~lWig 559 (795)
T 4a2l_A 549 YEASNGIIWVG 559 (795)
T ss_dssp EECTTSCEEEE
T ss_pred EECCCCCEEEE
Confidence 88888875443
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.94 E-value=0.0072 Score=51.74 Aligned_cols=198 Identities=10% Similarity=-0.021 Sum_probs=110.0
Q ss_pred ccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcE
Q 021036 17 THPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKV 96 (318)
Q Consensus 17 ~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i 96 (318)
..+.+.-+....|+..++........+. . ......++|++.. +.++++-...+.|
T Consensus 82 ~~~~ll~~~~~~I~~i~l~~~~~~~~~~--~------~~~~~~l~~d~~~-----------------~~lywsD~~~~~I 136 (400)
T 3p5b_L 82 SIAYLFFTNRHEVRKMTLDRSEYTSLIP--N------LRNVVALDTEVAS-----------------NRIYWSDLSQRMI 136 (400)
T ss_dssp TSCEEEEEETTEEEEECTTSCSCEEEEC--S------CSCEEEEEEETTT-----------------TEEEEEETTTTEE
T ss_pred ccceeEEeccceeEEEccCCcceeEecc--c------cCcceEEeeeecc-----------------CceEEEecCCCeE
Confidence 4455666666788888887654322221 1 1112347887765 3555666667888
Q ss_pred EEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCC-CCcEEEEEeCCCcEEEEECCCcceeeeecc
Q 021036 97 SLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSN-PQVLLVTGSSDGSVRIWDGYIQELQKSAEA 175 (318)
Q Consensus 97 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 175 (318)
+.+++...... ......+.........+++ .. .+.++++-...+.|.+.++........+..
T Consensus 137 ~~~~~~g~~~~----------~~~~~~~~~~~~~p~glav-------D~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~ 199 (400)
T 3p5b_L 137 CSTQLDRAHGV----------SSYDTVISRDIQAPDGLAV-------DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE 199 (400)
T ss_dssp EEEEC----------------CCCEEEECSSCSCEEEEEE-------ETTTTEEEEEETTTTEEEEECTTTCSEEEEEEC
T ss_pred EEEEcccCCCC----------CcceEEEeCCCCCcccEEE-------EecCCceEEEECCCCeEEEEeCCCCceEEEEeC
Confidence 88888642100 0011122223345677888 44 555666666678899988875433222211
Q ss_pred cccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe-C-CCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCC
Q 021036 176 HCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK-G-SGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFD 253 (318)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~-~-dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 253 (318)
.......|+++ |.+..|+... . .+.|...+++ ......+ ....-.....|+++++
T Consensus 200 --------------~~~~P~~iavd-----p~~g~ly~td~~~~~~I~~~~~d--G~~~~~~--~~~~l~~P~glavd~~ 256 (400)
T 3p5b_L 200 --------------NGSKPRAIVVD-----PVHGFMYWTDWGTPAKIKKGGLN--GVDIYSL--VTENIQWPNGITLDLL 256 (400)
T ss_dssp --------------SSCCEEEEEEE-----TTTTEEEEEECSSSCCEEEEETT--SCSCEEE--ECSSCSCEEEEEEETT
T ss_pred --------------CCCCcceEEEe-----cccCeEEEEeCCCCCEEEEEeCC--CCccEEE--EECCCCceEEEEEEeC
Confidence 11246789998 6544444444 2 3677777443 3221121 1222346789999987
Q ss_pred CCEEEEe-cCCCcEEEEEecCCceeee
Q 021036 254 GCCLYSC-SQDNFVRSWIFHGNSLSQV 279 (318)
Q Consensus 254 ~~~l~s~-~~d~~v~iwd~~~~~~~~~ 279 (318)
+..|+.+ ...+.|..+|+.+.....+
T Consensus 257 ~~~lY~aD~~~~~I~~~d~dG~~~~~~ 283 (400)
T 3p5b_L 257 SGRLYWVDSKLHSISSIDVNGGNRKTI 283 (400)
T ss_dssp TTEEEEEETTTTEEEEEETTSCCCEEE
T ss_pred CCEEEEEECCCCEEEEEeCCCCccEEE
Confidence 7666555 4567899999876554443
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0058 Score=56.95 Aligned_cols=177 Identities=10% Similarity=0.069 Sum_probs=92.4
Q ss_pred ceeEeecCCC-CCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCC-----CcEEEEEc
Q 021036 28 GNSITKIPSN-CCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRS-----GKVSLWRI 101 (318)
Q Consensus 28 ~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~d-----g~i~iw~~ 101 (318)
+++++|+.++ +.+... . ... ...+.|+|++ +.|+....| ..|.++++
T Consensus 202 ~l~v~dl~~g~~~l~~~-~-----~~~---~~~~~WspDg------------------~~l~y~~~d~~~~~~~v~~~~l 254 (751)
T 2xe4_A 202 TIEFKRISDPSQTIADK-V-----SGT---NGEIVWGPDH------------------TSLFYVTKDETLRENKVWRHVM 254 (751)
T ss_dssp EEEEEETTCTTCCCCCC-E-----EEE---CSCCEECSST------------------TEEEEEEECTTCCEEEEEEEET
T ss_pred EEEEEECCCCCEeCCcc-c-----cCc---eeeEEEecCC------------------CEEEEEEECCCCCCCEEEEEEC
Confidence 4888899888 532210 0 111 1237888887 666655544 25777777
Q ss_pred cCCccccccccccCCceeEEeeec-cccccEEEEEeeeecCCCCCCCcEEEEEeC---CCcEEEEECCCcc-ee--eeec
Q 021036 102 CVPKCYSVEDCKVPTTAVLIGLFQ-AHNSWITSISLAVLSSDSSNPQVLLVTGSS---DGSVRIWDGYIQE-LQ--KSAE 174 (318)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~---d~~v~iwd~~~~~-~~--~~~~ 174 (318)
.+++. +....+. ........+.| +++|++|+..+. ...|.++|+.++. .. ..+.
T Consensus 255 gt~~~------------~~~lv~~~~~~~~~~~~~~-------SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~ 315 (751)
T 2xe4_A 255 GKLQS------------EDVCLYEEHNPLFSAFMYK-------AADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVR 315 (751)
T ss_dssp TSCGG------------GCEEEEECCCTTCEEEEEE-------CTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESS
T ss_pred CCCch------------hcEEEEecCCCceEEEEEE-------CCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEee
Confidence 66431 1111222 22334667899 899998876653 3468888887652 11 2221
Q ss_pred ccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCC--CcEEEeeeccCC-CeeeEeeeeecccC--ceeEEE
Q 021036 175 AHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGS--GSFDLWKCDISC-NKFDKVGSYNAHDQ--VVTGLA 249 (318)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~d--g~i~vw~~~~~~-~~~~~~~~~~~h~~--~v~~~~ 249 (318)
.. .......+.|+ .++.+++....+ +..+||.++..+ ..++.+ +..+.. .+..+.
T Consensus 316 ~~-------------~~~~~~s~~~~-----~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~--li~~~~~~~l~~~~ 375 (751)
T 2xe4_A 316 PR-------------EKGVRYDVQMH-----GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHV--LVDHSEDVFMESIA 375 (751)
T ss_dssp CC-------------CTTCCEEEEEE-----TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCE--EECCCSSEEEEEEE
T ss_pred cC-------------CCCceEEEeee-----eCCEEEEEeCCCCCCCcEEEEEcCCCcccceee--EECCCCCcEEEEEE
Confidence 11 12234445554 455555665554 455666556554 232220 222333 344555
Q ss_pred EcCCCCEEEEecCCCc--EEEEEe
Q 021036 250 WAFDGCCLYSCSQDNF--VRSWIF 271 (318)
Q Consensus 250 ~~~~~~~l~s~~~d~~--v~iwd~ 271 (318)
+. .+.++++...++. |.++++
T Consensus 376 ~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 376 VR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EC-SSEEEEEEEETTEEEEEEEEC
T ss_pred EE-CCEEEEEEEeCCEEEEEEEec
Confidence 54 2335566677776 445554
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0027 Score=57.15 Aligned_cols=56 Identities=11% Similarity=0.092 Sum_probs=35.3
Q ss_pred CCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCcee
Q 021036 217 SGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLS 277 (318)
Q Consensus 217 dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 277 (318)
+|.|..| |..+++ .+.++.. ...+........+..++.++.|+.|+.||.++++..
T Consensus 443 ~g~l~a~--D~~tG~--~~W~~~~-~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~l 498 (571)
T 2ad6_A 443 MGQIRAF--DLTTGK--AKWTKWE-KFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKEL 498 (571)
T ss_dssp CEEEEEE--CTTTCC--EEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred CCeEEEE--ECCCCC--EEEEecC-CCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEE
Confidence 4667777 666666 3334332 222333223334567777999999999999987765
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00081 Score=61.69 Aligned_cols=118 Identities=11% Similarity=0.109 Sum_probs=68.6
Q ss_pred cCCCC-CccEEEEecCCC-----------cEEEEEccCCccccccccccCCceeEEeeec-cccccEEEEEeeeecCCCC
Q 021036 78 NGSSN-WFSILAVGGRSG-----------KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQ-AHNSWITSISLAVLSSDSS 144 (318)
Q Consensus 78 ~~~s~-~~~~l~~g~~dg-----------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~~ 144 (318)
.++.+ ++++++.|+.+. .+.+||..+++.. .+..+. .+.....++++ .
T Consensus 191 ~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~------------~~~~~~~~~~~~~~~~~~-------~ 251 (656)
T 1k3i_A 191 AAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVS------------DRTVTVTKHDMFCPGISM-------D 251 (656)
T ss_dssp EEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBC------------CCEEEECSCCCSSCEEEE-------C
T ss_pred EEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEE------------eCcccCCCCCCccccccC-------C
Confidence 34444 678888887543 5788998886632 222221 22333445666 6
Q ss_pred CCCcEEEEEeC-CCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe-CC-----
Q 021036 145 NPQVLLVTGSS-DGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK-GS----- 217 (318)
Q Consensus 145 ~~~~~l~s~~~-d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~-~d----- 217 (318)
.++++++.|+. +..+.+||..+.+-...-..... ..-..++.. +++++++.|+ .+
T Consensus 252 ~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~-------------R~~~s~~~~-----~dg~iyv~GG~~~~~~~~ 313 (656)
T 1k3i_A 252 GNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVA-------------RGYQSSATM-----SDGRVFTIGGSWSGGVFE 313 (656)
T ss_dssp TTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSC-------------CSSCEEEEC-----TTSCEEEECCCCCSSSCC
T ss_pred CCCCEEEeCCCCCCceEEecCcCCceeECCCCCcc-------------ccccceEEe-----cCCeEEEEeCcccCCccc
Confidence 78899999984 46899999887643322111110 011233443 6788888887 34
Q ss_pred CcEEEeeeccCCCeeeE
Q 021036 218 GSFDLWKCDISCNKFDK 234 (318)
Q Consensus 218 g~i~vw~~~~~~~~~~~ 234 (318)
..+.+| |..+.++..
T Consensus 314 ~~~e~y--d~~t~~W~~ 328 (656)
T 1k3i_A 314 KNGEVY--SPSSKTWTS 328 (656)
T ss_dssp CCEEEE--ETTTTEEEE
T ss_pred ccceEe--CCCCCccee
Confidence 457777 555555544
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.90 E-value=0.0052 Score=50.43 Aligned_cols=144 Identities=10% Similarity=-0.014 Sum_probs=79.5
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCC--cEEEE
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDG--SVRIW 162 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~--~v~iw 162 (318)
+++++-..++.|..|+.+.. ....+. .......+++ .++++++++..... .|..+
T Consensus 44 ~lyv~d~~~~~I~~~d~~g~---------------~~~~~~-~~~~p~gia~-------~~dG~l~vad~~~~~~~v~~~ 100 (306)
T 2p4o_A 44 TIFVTNHEVGEIVSITPDGN---------------QQIHAT-VEGKVSGLAF-------TSNGDLVATGWNADSIPVVSL 100 (306)
T ss_dssp CEEEEETTTTEEEEECTTCC---------------EEEEEE-CSSEEEEEEE-------CTTSCEEEEEECTTSCEEEEE
T ss_pred CEEEEeCCCCeEEEECCCCc---------------eEEEEe-CCCCceeEEE-------cCCCcEEEEeccCCcceEEEE
Confidence 87777778899999987642 111121 2346789999 88888666554332 46667
Q ss_pred ECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEee------
Q 021036 163 DGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVG------ 236 (318)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~------ 236 (318)
|..+++......... ......++.. +++..+++...++.|+.+ +...++.+...
T Consensus 101 d~~~g~~~~~~~~~~-------------~~~~~g~~~~-----~~~~~~v~d~~~g~i~~~--d~~~~~~~v~~~~~~~~ 160 (306)
T 2p4o_A 101 VKSDGTVETLLTLPD-------------AIFLNGITPL-----SDTQYLTADSYRGAIWLI--DVVQPSGSIWLEHPMLA 160 (306)
T ss_dssp ECTTSCEEEEEECTT-------------CSCEEEEEES-----SSSEEEEEETTTTEEEEE--ETTTTEEEEEEECGGGS
T ss_pred cCCCCeEEEEEeCCC-------------ccccCccccc-----CCCcEEEEECCCCeEEEE--eCCCCcEeEEEECCccc
Confidence 777665432221111 0012333433 555555555567877777 54433211110
Q ss_pred --eeecccCceeEEEEcCCCCEE-EEecCCCcEEEEEecC
Q 021036 237 --SYNAHDQVVTGLAWAFDGCCL-YSCSQDNFVRSWIFHG 273 (318)
Q Consensus 237 --~~~~h~~~v~~~~~~~~~~~l-~s~~~d~~v~iwd~~~ 273 (318)
.....-.....+ +|++.+| ++-...+.|..|++..
T Consensus 161 ~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~ 198 (306)
T 2p4o_A 161 RSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDS 198 (306)
T ss_dssp CSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCT
T ss_pred cccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCC
Confidence 000111233455 7887755 4555678899999874
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.89 E-value=0.0072 Score=49.92 Aligned_cols=194 Identities=10% Similarity=-0.037 Sum_probs=106.2
Q ss_pred eEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEEE
Q 021036 20 TVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLW 99 (318)
Q Consensus 20 ~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw 99 (318)
.+.-+....|+..|+.+.+....+. ... ....++|++.. +.++++-...+.|..+
T Consensus 3 ~ll~~~~~~I~~i~~~~~~~~~~~~--~~~------~p~g~~~d~~~-----------------~~ly~~D~~~~~I~~~ 57 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTLDRSEYTSLIP--NLR------NVVALDTEVAS-----------------NRIYWSDLSQRMICST 57 (316)
T ss_dssp EEEEECBSSEEEEETTSCCCEEEEC--SCS------SEEEEEEETTT-----------------TEEEEEETTTTEEEEE
T ss_pred EEEEECCCeEEEEECCCcceEehhc--CCC------ceEEEEEEeCC-----------------CEEEEEECCCCcEEEE
Confidence 3444555678999988765433322 111 12348888765 3566666677889999
Q ss_pred EccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCC-CCcEEEEEeCCCcEEEEECCCcceeeeeccccc
Q 021036 100 RICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSN-PQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCV 178 (318)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~ 178 (318)
+....... ......+.........+++ .. ++.++++-...+.|.+.++........+..
T Consensus 58 ~~~g~~~~----------~~~~~~~~~~~~~p~glav-------d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~--- 117 (316)
T 1ijq_A 58 QLDRAHGV----------SSYDTVISRDIQAPDGLAV-------DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE--- 117 (316)
T ss_dssp EC------------------CEEEECSSCSCCCEEEE-------ETTTTEEEEEETTTTEEEEEETTSSSEEEEEEC---
T ss_pred ECCCCCCC----------cccEEEEeCCCCCcCEEEE-------eecCCeEEEEECCCCEEEEEeCCCCceEEEEEC---
Confidence 88751000 0011112222234467777 53 455556666778999999875432221111
Q ss_pred ccccceeeeeecccceeEEEEeeccCCCCce-EEEEEeCC-CcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCE
Q 021036 179 PFSLLKEVVTVNTVPISVLSLILPVQSPRLM-LLAVGKGS-GSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCC 256 (318)
Q Consensus 179 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~-~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 256 (318)
.......++++ |.+. ++.+.... +.|..++.+ ....+.+. ...-.....++++|++..
T Consensus 118 -----------~~~~P~~iavd-----p~~g~ly~~d~~~~~~I~~~~~d--G~~~~~~~--~~~~~~P~gla~d~~~~~ 177 (316)
T 1ijq_A 118 -----------NGSKPRAIVVD-----PVHGFMYWTDWGTPAKIKKGGLN--GVDIYSLV--TENIQWPNGITLDLLSGR 177 (316)
T ss_dssp -----------TTCCEEEEEEE-----TTTTEEEEEECSSSCEEEEEETT--SCCEEEEE--CSSCSCEEEEEEETTTTE
T ss_pred -----------CCCCcceEEeC-----CCCCEEEEEccCCCCeEEEEcCC--CCCeEEEE--ECCCCCceEEEEeccCCE
Confidence 11245788998 7544 44444333 677777443 32211211 122345689999997665
Q ss_pred EE-EecCCCcEEEEEecCCceee
Q 021036 257 LY-SCSQDNFVRSWIFHGNSLSQ 278 (318)
Q Consensus 257 l~-s~~~d~~v~iwd~~~~~~~~ 278 (318)
|. +-+..+.|..+|+.+.....
T Consensus 178 lY~~D~~~~~I~~~d~dg~~~~~ 200 (316)
T 1ijq_A 178 LYWVDSKLHSISSIDVNGGNRKT 200 (316)
T ss_dssp EEEEETTTTEEEEEETTSCSCEE
T ss_pred EEEEECCCCeEEEEecCCCceEE
Confidence 54 44566789999987644433
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0055 Score=53.08 Aligned_cols=161 Identities=7% Similarity=-0.114 Sum_probs=90.2
Q ss_pred cEEEEEeeeecCCCCC-CCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCc
Q 021036 130 WITSISLAVLSSDSSN-PQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRL 208 (318)
Q Consensus 130 ~v~~~~~~p~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ 208 (318)
....+++ .+ ++.++++-..++.|+.+|..++.....+.... ....-..++++ |++
T Consensus 229 ~P~giav-------d~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~------------~~~~~~~ia~d-----pdG 284 (433)
T 4hw6_A 229 GAKTCAV-------HPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMD------------TKGSNFHIVWH-----PTG 284 (433)
T ss_dssp SBCCCEE-------CTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECS------------CCSSCEEEEEC-----TTS
T ss_pred CCCEEEE-------eCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccC------------CCCCcccEEEe-----CCC
Confidence 3456777 66 67666666677889999988665422221110 01122468999 899
Q ss_pred eEEE-EEeCCCcEEEeeeccCCCeeeEeeeeecc---------------cCceeEEEE---------cCCCCEEEEecCC
Q 021036 209 MLLA-VGKGSGSFDLWKCDISCNKFDKVGSYNAH---------------DQVVTGLAW---------AFDGCCLYSCSQD 263 (318)
Q Consensus 209 ~~l~-~~~~dg~i~vw~~~~~~~~~~~~~~~~~h---------------~~~v~~~~~---------~~~~~~l~s~~~d 263 (318)
+.|+ +-...+.|+.++++..++.+.....+.+. -.....+++ .++|.++++-...
T Consensus 285 ~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n 364 (433)
T 4hw6_A 285 DWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDS 364 (433)
T ss_dssp SEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTT
T ss_pred CEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCC
Confidence 8554 44567888888666544432111122111 123567888 7777777777777
Q ss_pred CcEEEEEecCCceeeeecCCCC---CCccccccCCCcceeeeEEEEc-CCCcEEEE
Q 021036 264 NFVRSWIFHGNSLSQVSIPTNT---PGLQSCTDLPDAFVSCLGMAVS-PGNLVVAM 315 (318)
Q Consensus 264 ~~v~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~h~~~v~~v~~s-p~~~~l~~ 315 (318)
+.|+.++. .+.+..+...... ....+............+|+++ ++|.++++
T Consensus 365 ~~I~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVa 419 (433)
T 4hw6_A 365 HTVRVLTP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIG 419 (433)
T ss_dssp TEEEEECT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEE
T ss_pred CEEEEECC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEE
Confidence 88999985 4555554433220 0000100011223456899999 56665543
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=0.013 Score=54.94 Aligned_cols=198 Identities=10% Similarity=0.073 Sum_probs=113.1
Q ss_pred cccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeec----cccccEEEEEeeeecCCCCCCCcE
Q 021036 74 PVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQ----AHNSWITSISLAVLSSDSSNPQVL 149 (318)
Q Consensus 74 ~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~----~h~~~v~~~~~~p~~~~~~~~~~~ 149 (318)
.|.++..+++|++. .|+.++-|..++..++.. +...... -....|.++.. ..+|.
T Consensus 311 ~i~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~~------------~~~~~~~~~~~l~~~~V~~i~~-------d~~g~- 369 (795)
T 4a2l_A 311 SVRSIFMDSQGGMW-LGTYFGGLNYYHPIRNRF------------KNIRNIPYKNSLSDNVVSCIVE-------DKDKN- 369 (795)
T ss_dssp CEEEEEECTTSCEE-EEESSSCEEEECGGGGSS------------EEECCCTTSSSCSCSSEEEEEE-------CTTSC-
T ss_pred cEEEEEEeCCcCEE-EEECCCCeEEeCCCcccc------------eEEcCCCCCCCCCCCeeEEEEE-------CCCCC-
Confidence 45566666666655 466666688888765431 1111100 12456999988 66775
Q ss_pred EEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCC
Q 021036 150 LVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISC 229 (318)
Q Consensus 150 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~ 229 (318)
|-.|+.++-|..||..+++..........+. .......|.++... +++.+|..|+.++-+..| +..+
T Consensus 370 lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~------~~l~~~~v~~i~~d-----~~g~~lWigt~~~Gl~~~--d~~~ 436 (795)
T 4a2l_A 370 LWIGTNDGGLNLYNPITQRFTSYTLQEDESA------RGIGSNNIKAVYVD-----EKKSLVYIGTHAGGLSIL--HRNS 436 (795)
T ss_dssp EEEEESSSCEEEECTTTCCEEEECCC------------CCSCSCEEEEEEE-----TTTTEEEEEETTTEEEEE--ETTT
T ss_pred EEEEECCCCeEEEcCCCCcEEEEecCCCCcc------cCCCCccEEEEEEc-----CCCCEEEEEeCcCceeEE--eCCC
Confidence 4457777789999987665332211110000 00012368888888 788757777776778888 5555
Q ss_pred CeeeEeeeee--cccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEc
Q 021036 230 NKFDKVGSYN--AHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVS 307 (318)
Q Consensus 230 ~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s 307 (318)
+++....... .....|.++..+++|.+.+.. . +-+.+||..++....+....... .-....|.++...
T Consensus 437 ~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~~~~~~~~--------~~~~~~i~~i~~d 506 (795)
T 4a2l_A 437 GQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRSFTTIEKEKDGT--------PVVSKQITTLFRD 506 (795)
T ss_dssp CCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTEEEECCBCTTCC--------BCCCCCEEEEEEC
T ss_pred CcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCeEEEcccccccc--------ccCCceEEEEEEC
Confidence 5533321100 134578999988888855544 3 45888998776655443220000 0012367888888
Q ss_pred CCCcEEEE
Q 021036 308 PGNLVVAM 315 (318)
Q Consensus 308 p~~~~l~~ 315 (318)
++|.+.+.
T Consensus 507 ~~g~lWig 514 (795)
T 4a2l_A 507 SHKRLWIG 514 (795)
T ss_dssp TTCCEEEE
T ss_pred CCCCEEEE
Confidence 88765543
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00069 Score=63.19 Aligned_cols=155 Identities=13% Similarity=0.012 Sum_probs=82.5
Q ss_pred cccccCCC-CCccEEEEecC-CC----cEEEEEccCC-ccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCC
Q 021036 74 PVPQNGSS-NWFSILAVGGR-SG----KVSLWRICVP-KCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNP 146 (318)
Q Consensus 74 ~v~~~~~s-~~~~~l~~g~~-dg----~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~ 146 (318)
.+....+| |+|++||.+.. +| .|+++|+.++ +.+. ..+.. ....+.| +++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~-------------~~~~~---~~~~~~W-------spD 231 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA-------------DKVSG---TNGEIVW-------GPD 231 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC-------------CCEEE---ECSCCEE-------CSS
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC-------------ccccC---ceeeEEE-------ecC
Confidence 44555566 66687775432 23 5999999986 4210 01111 1346889 899
Q ss_pred CcEEEEEeCC-----CcEEEEECCCccee--eeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeC---
Q 021036 147 QVLLVTGSSD-----GSVRIWDGYIQELQ--KSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKG--- 216 (318)
Q Consensus 147 ~~~l~s~~~d-----~~v~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~--- 216 (318)
|+.|+....| ..|.++++.+++.. ..+... .......+.|+ |||+.|+..+.
T Consensus 232 g~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~-------------~~~~~~~~~~S-----pDg~~l~~~~~~~~ 293 (751)
T 2xe4_A 232 HTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEH-------------NPLFSAFMYKA-----ADTNTLCIGSQSPE 293 (751)
T ss_dssp TTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECC-------------CTTCEEEEEEC-----TTSSEEEEEEECSS
T ss_pred CCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecC-------------CCceEEEEEEC-----CCCCEEEEEecCCC
Confidence 9877777665 25777787765422 111110 11123467788 99988776652
Q ss_pred CCcEEEeeeccCCC--ee--eEeeeeecccCceeEEEEcCCCCEEEEecCC----CcEEEEEecC
Q 021036 217 SGSFDLWKCDISCN--KF--DKVGSYNAHDQVVTGLAWAFDGCCLYSCSQD----NFVRSWIFHG 273 (318)
Q Consensus 217 dg~i~vw~~~~~~~--~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d----~~v~iwd~~~ 273 (318)
...|+++ +..++ .. ..+ ..........+.|+..+.+++....+ ..|..+++.+
T Consensus 294 ~~~l~~~--d~~~~~~~~~~~~l--~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 294 TAEVHLL--DLRKGNAHNTLEIV--RPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp CEEEEEE--ESSSCTTCCCEEES--SCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred CceEEEE--ECCCCCCCceeEEe--ecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 2335555 55443 22 122 22234455556555444444444443 3566666554
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.011 Score=49.66 Aligned_cols=145 Identities=6% Similarity=-0.048 Sum_probs=84.9
Q ss_pred cccEEEEEeeeecCCCCC-CCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCC
Q 021036 128 NSWITSISLAVLSSDSSN-PQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSP 206 (318)
Q Consensus 128 ~~~v~~~~~~p~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~ 206 (318)
......++| .+ ++.++++-...+.|..+++..+.....+... ......++++ +
T Consensus 72 ~~~~~~l~~-------d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~--------------~~~p~glavd-----~ 125 (349)
T 3v64_C 72 LENAIALDF-------HHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG--------------LESPGGLAVD-----W 125 (349)
T ss_dssp CSCEEEEEE-------ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS--------------CSCCCEEEEE-----T
T ss_pred CCceEEEEE-------eccccEEEEEeccCCceEEEecCCCCceEEEeCC--------------CCCccEEEEe-----c
Confidence 345788999 54 4555555556788999998765432222111 1134678888 5
Q ss_pred -CceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEE-EEecCC-CcEEEEEecCCceeeeecCC
Q 021036 207 -RLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCL-YSCSQD-NFVRSWIFHGNSLSQVSIPT 283 (318)
Q Consensus 207 -~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~d-~~v~iwd~~~~~~~~~~~~~ 283 (318)
.+.++++-...+.|.+.+.+ ......+ +...-.....++++|.+..| .+-... +.|..+++.+.....+....
T Consensus 126 ~~g~ly~~d~~~~~I~~~~~d--G~~~~~l--~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~ 201 (349)
T 3v64_C 126 VHDKLYWTDSGTSRIEVANLD--GAHRKVL--LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTH 201 (349)
T ss_dssp TTTEEEEEETTTTEEEEEETT--SCSCEEE--ECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSS
T ss_pred CCCeEEEEcCCCCeEEEEcCC--CCceEEE--EeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECC
Confidence 55666666677889888544 3221111 22233456899999965544 444444 77888887764433322111
Q ss_pred CCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 284 NTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 284 ~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
....++++|+|++..|..+
T Consensus 202 --------------~~~PnGla~d~~~~~lY~a 220 (349)
T 3v64_C 202 --------------LFWPNGLTIDYAGRRMYWV 220 (349)
T ss_dssp --------------CSCEEEEEEETTTTEEEEE
T ss_pred --------------CCCcceEEEeCCCCEEEEE
Confidence 1245788898866655543
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.0044 Score=51.02 Aligned_cols=173 Identities=6% Similarity=-0.029 Sum_probs=102.7
Q ss_pred eeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeecc----cc--ccEE
Q 021036 59 AVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQA----HN--SWIT 132 (318)
Q Consensus 59 ~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~----h~--~~v~ 132 (318)
+..|++.. +.++++.-..|.|..|+...+.. ..+ .+.+ .. ..+.
T Consensus 17 ~~~wd~~~-----------------g~~~vs~l~~g~V~~~~~~~~~~------------~~~-~~~~~s~~g~~~~~~s 66 (334)
T 2p9w_A 17 DTIYDRTR-----------------QVFYQSNLYKGRIEVYNPKTQSH------------FNV-VIDGASSNGDGEQQMS 66 (334)
T ss_dssp CEEEETTT-----------------TEEEEEETTTTEEEEECTTTCCE------------EEE-CCTTTCCSSCCSEEEE
T ss_pred CccCcCCC-----------------CEEEEEeccCCEEEEEcCCCCeE------------EEE-ecCCccccCCCcceee
Confidence 47888766 35555555799999999875431 122 2222 11 1357
Q ss_pred EEEeeeecCCCCCCCcEEEEEe-------------CCCcEEEEECC---CcceeeeecccccccccceeeeeecccceeE
Q 021036 133 SISLAVLSSDSSNPQVLLVTGS-------------SDGSVRIWDGY---IQELQKSAEAHCVPFSLLKEVVTVNTVPISV 196 (318)
Q Consensus 133 ~~~~~p~~~~~~~~~~~l~s~~-------------~d~~v~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 196 (318)
.|.|.- +.++++++++.. .+..|..+|+. +++.+.........-.. .............
T Consensus 67 Gl~~~~----~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~-~~~~g~~~~~~nD 141 (334)
T 2p9w_A 67 GLSLLT----HDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEF-EKKAGKRPFGVVQ 141 (334)
T ss_dssp EEEESS----SSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHH-HHHHSSCCEEEEE
T ss_pred EEEEec----cCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccc-cccccccccCCce
Confidence 888800 025677777543 26789999998 77766554322100000 0000001124778
Q ss_pred EEEeeccCCCCceEEEEEeCC-CcEEEeeeccCCCeeeEeee-e--ecccCceeEEEEcCCCCEEEEecCCCcEEEEEec
Q 021036 197 LSLILPVQSPRLMLLAVGKGS-GSFDLWKCDISCNKFDKVGS-Y--NAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFH 272 (318)
Q Consensus 197 l~~~~~~~~~~~~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~-~--~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 272 (318)
++.. ++|+..++++.. +.|... +........... . .......+.++++|+|..|++...++.+..+|+.
T Consensus 142 vavD-----~~GnaYVt~s~~~~~I~rV--~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 142 SAQD-----RDGNSYVAFALGMPAIARV--SADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp EEEC-----TTSCEEEEEEESSCEEEEE--CTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred eEEC-----CCCCEEEeCCCCCCeEEEE--eCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 9998 999999999887 776666 443332111110 1 1112236789999999988777669999999987
Q ss_pred C
Q 021036 273 G 273 (318)
Q Consensus 273 ~ 273 (318)
.
T Consensus 215 ~ 215 (334)
T 2p9w_A 215 K 215 (334)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.015 Score=49.44 Aligned_cols=165 Identities=6% Similarity=-0.062 Sum_probs=94.1
Q ss_pred CCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCC-CCcEEEEEeCCCcEEEEECCCcceee
Q 021036 93 SGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSN-PQVLLVTGSSDGSVRIWDGYIQELQK 171 (318)
Q Consensus 93 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~ 171 (318)
...|+..++...+. ..+.........++| .+ ++.++++-...+.|..+++..+....
T Consensus 95 ~~~I~~i~~~~~~~---------------~~~~~~~~~~~gl~~-------d~~~~~ly~~D~~~~~I~r~~~~g~~~~~ 152 (386)
T 3v65_B 95 RIDIRQVLPHRSEY---------------TLLLNNLENAIALDF-------HHRRELVFWSDVTLDRILRANLNGSNVEE 152 (386)
T ss_dssp BSCEEEECTTSCCC---------------EEEECSCSCEEEEEE-------ETTTTEEEEEETTTTEEEEEETTSCCEEE
T ss_pred CccceeeccCCCcE---------------EEEecCCCccEEEEE-------ecCCCeEEEEeCCCCcEEEEecCCCCcEE
Confidence 35688888775431 112222345788999 54 45556665667889999987654322
Q ss_pred eecccccccccceeeeeecccceeEEEEeeccCCC-CceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEE
Q 021036 172 SAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSP-RLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAW 250 (318)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~ 250 (318)
.+... ......++++ + .+.++++-...+.|.+.+++ ......+ +.........+++
T Consensus 153 ~~~~~--------------~~~p~glavd-----~~~g~lY~~d~~~~~I~~~~~d--g~~~~~l--~~~~l~~P~giav 209 (386)
T 3v65_B 153 VVSTG--------------LESPGGLAVD-----WVHDKLYWTDSGTSRIEVANLD--GAHRKVL--LWQSLEKPRAIAL 209 (386)
T ss_dssp EECSS--------------CSCCCCEEEE-----TTTTEEEEEETTTTEEEECBTT--SCSCEEE--ECSSCSCEEEEEE
T ss_pred EEeCC--------------CCCccEEEEE-----eCCCeEEEEcCCCCeEEEEeCC--CCceEEe--ecCCCCCCcEEEE
Confidence 22111 1134567887 5 45666666667888887443 3221111 2223345689999
Q ss_pred cCCCCEEEEe-cCC-CcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 251 AFDGCCLYSC-SQD-NFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 251 ~~~~~~l~s~-~~d-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
+|.+..|+.. ... +.|..+++.+.....+.... . ...++++|+|++..|..+
T Consensus 210 dp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~-~-------------~~PnGlavd~~~~~lY~a 263 (386)
T 3v65_B 210 HPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTH-L-------------FWPNGLTIDYAGRRMYWV 263 (386)
T ss_dssp ETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSS-C-------------SCEEEEEEEGGGTEEEEE
T ss_pred EcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECC-C-------------CCeeeEEEeCCCCEEEEE
Confidence 9976655444 344 67888887764433332111 1 135788888766655543
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0035 Score=54.25 Aligned_cols=143 Identities=8% Similarity=0.019 Sum_probs=83.4
Q ss_pred cEEEEEeeeecCCCCC-CCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCc
Q 021036 130 WITSISLAVLSSDSSN-PQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRL 208 (318)
Q Consensus 130 ~v~~~~~~p~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ 208 (318)
....|++ ++ ++..|..+...+.|+.+|+..+....... .......++++ +++
T Consensus 138 ~P~~lav-------dp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~---------------~~~~P~~ia~d-----~~G 190 (430)
T 3tc9_A 138 GAVWLSF-------DPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS---------------GLSKVRTICWT-----HEA 190 (430)
T ss_dssp CCCEEEE-------ETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC---------------CCSCEEEEEEC-----TTS
T ss_pred CCCEEEE-------CCCCCCeEEEEeCCCcEEEEECCCCEEEEEec---------------CCCCcceEEEe-----CCC
Confidence 3467788 65 34445555554788888887655433222 12256789999 899
Q ss_pred eEEEEEeC-CC----cEEEeeeccCCCeeeEeeeeecccCceeEEEEcC-CCCEEEEecCCCcEEEEEecCCceeeeecC
Q 021036 209 MLLAVGKG-SG----SFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAF-DGCCLYSCSQDNFVRSWIFHGNSLSQVSIP 282 (318)
Q Consensus 209 ~~l~~~~~-dg----~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 282 (318)
+.|+++.. ++ .+.++ +.. +.+.....+.. ......++++| +|.++++-..++.|..++..++....+...
T Consensus 191 ~~lyvad~~~~~~~~~v~~~--~~~-g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~ 266 (430)
T 3tc9_A 191 DSMIITNDQNNNDRPNNYIL--TRE-SGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTI 266 (430)
T ss_dssp SEEEEEECCSCTTSEEEEEE--EGG-GTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred CEEEEEeCCCCcccceEEEE--eCC-Cceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEc
Confidence 86666553 22 23333 322 22211122221 23457788999 677777777788999999887655332221
Q ss_pred CCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 283 TNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 283 ~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
+.. .....++|+|+|++|..+
T Consensus 267 ~~~-------------~~P~gia~~pdG~~lyv~ 287 (430)
T 3tc9_A 267 QDS-------------GWEFHIQFHPSGNYAYIV 287 (430)
T ss_dssp SSS-------------SCCEEEEECTTSSEEEEE
T ss_pred CCC-------------CcceeEEEcCCCCEEEEE
Confidence 111 134789999999855543
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0021 Score=59.00 Aligned_cols=166 Identities=21% Similarity=0.122 Sum_probs=94.0
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeecccc-ccEEEEEeeeecCCCCCCCcEEEEEeC------C
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHN-SWITSISLAVLSSDSSNPQVLLVTGSS------D 156 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~p~~~~~~~~~~~l~s~~~------d 156 (318)
+..++.++.|+.|..+|.++++. +-.+.... .....+.-.|. -.++ .++.+.. +
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~--------------~W~~~~~~~~~~~~~~~~P~----v~~~-~v~vg~~~~~~~~~ 177 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKA--------------IWSQQTTDPAKPYSITGAPR----VVKG-KVIIGNGGAEYGVR 177 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCE--------------EEEEECSCTTSSCBCCSCCE----EETT-EEEECCBCTTTCCB
T ss_pred CCEEEEEcCCCEEEEEECCCCCE--------------eeeeccCCCCCcceecCCCE----EECC-EEEEeCCCCCcCCC
Confidence 46788888999999999999763 22222110 00000111000 0133 4444433 5
Q ss_pred CcEEEEECCCcceeeeecccc-ccccc-----c---eeee--------eecccceeEEEEeeccCCCCceEEEEEeCCCc
Q 021036 157 GSVRIWDGYIQELQKSAEAHC-VPFSL-----L---KEVV--------TVNTVPISVLSLILPVQSPRLMLLAVGKGSGS 219 (318)
Q Consensus 157 ~~v~iwd~~~~~~~~~~~~~~-~~~~~-----~---~~~~--------~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~ 219 (318)
+.|..+|..+|+.+..+.... .+... + .... .........++++ ++..+++.+..++.
T Consensus 178 g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d-----~~~~~vy~~~~~g~ 252 (668)
T 1kv9_A 178 GFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYD-----PELDLLYVGTGNGS 252 (668)
T ss_dssp CEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEE-----TTTTEEEEECCCEE
T ss_pred CEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEc-----CCCCEEEEeCCCCC
Confidence 899999999999988765311 11000 0 0000 0111223356777 77788888876663
Q ss_pred -------------------EEEeeeccCCCeeeEeeeeec--cc-------CceeEEEEcCCCC---EEEEecCCCcEEE
Q 021036 220 -------------------FDLWKCDISCNKFDKVGSYNA--HD-------QVVTGLAWAFDGC---CLYSCSQDNFVRS 268 (318)
Q Consensus 220 -------------------i~vw~~~~~~~~~~~~~~~~~--h~-------~~v~~~~~~~~~~---~l~s~~~d~~v~i 268 (318)
|..+ |..+++ .+..++. |. .+.....+..+|+ .++.++.+|.+++
T Consensus 253 ~w~~~~~~~~~gd~l~~~~v~Al--D~~tG~--~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~ 328 (668)
T 1kv9_A 253 PWNREVRSPGGGDNLYLSSILAI--RPDTGK--LAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYV 328 (668)
T ss_dssp SSCHHHHSTTCCCCTTTTEEEEE--CTTTCC--EEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEE
T ss_pred ccccCCCCCCCCCceeeeeEEEE--cCCCCc--eeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEE
Confidence 6665 777877 3444432 22 2222223334665 6889999999999
Q ss_pred EEecCCcee
Q 021036 269 WIFHGNSLS 277 (318)
Q Consensus 269 wd~~~~~~~ 277 (318)
+|..++++.
T Consensus 329 lD~~tG~~l 337 (668)
T 1kv9_A 329 LDRTNGKLI 337 (668)
T ss_dssp EETTTCCEE
T ss_pred EECCCCCEe
Confidence 999988765
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0056 Score=53.01 Aligned_cols=153 Identities=7% Similarity=-0.024 Sum_probs=89.1
Q ss_pred ccccCCCC-CccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEE
Q 021036 75 VPQNGSSN-WFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTG 153 (318)
Q Consensus 75 v~~~~~s~-~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~ 153 (318)
...++++| ++..|+.....+.|+.+|.+.+. +..+.........++| .+++++|+.+
T Consensus 139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~---------------v~~~~~~~~~P~~ia~-------d~~G~~lyva 196 (430)
T 3tc9_A 139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY---------------VSTVYSGLSKVRTICW-------THEADSMIIT 196 (430)
T ss_dssp CCEEEEETTEEEEEEEEEBTEEEEEEETTTTE---------------EEEEECCCSCEEEEEE-------CTTSSEEEEE
T ss_pred CCEEEECCCCCCeEEEEeCCCcEEEEECCCCE---------------EEEEecCCCCcceEEE-------eCCCCEEEEE
Confidence 44566665 23445554444788888887643 2222233456789999 8888855555
Q ss_pred eC-CC----cEEEEECCCccee--eeecccccccccceeeeeecccceeEEEEeeccCCC-CceEEEEEeCCCcEEEeee
Q 021036 154 SS-DG----SVRIWDGYIQELQ--KSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSP-RLMLLAVGKGSGSFDLWKC 225 (318)
Q Consensus 154 ~~-d~----~v~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~-~~~~l~~~~~dg~i~vw~~ 225 (318)
.. ++ .+...+ ..+... ..+. .......++++ | ++.++++-..++.|..|
T Consensus 197 d~~~~~~~~~v~~~~-~~g~~~~~~~l~---------------~~~~p~giavd-----p~~g~lyv~d~~~~~V~~~-- 253 (430)
T 3tc9_A 197 NDQNNNDRPNNYILT-RESGFKVITELT---------------KGQNCNGAETH-----PINGELYFNSWNAGQVFRY-- 253 (430)
T ss_dssp ECCSCTTSEEEEEEE-GGGTSCSEEEEE---------------ECSSCCCEEEC-----TTTCCEEEEETTTTEEEEE--
T ss_pred eCCCCcccceEEEEe-CCCceeeeeeec---------------cCCCceEEEEe-----CCCCEEEEEECCCCEEEEE--
Confidence 54 22 233333 223221 1111 11235677888 7 67777776678888888
Q ss_pred ccCCCeeeEeeeeecccCceeEEEEcCCCCE-EEEecCCCcEEEEEecC
Q 021036 226 DISCNKFDKVGSYNAHDQVVTGLAWAFDGCC-LYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 226 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~~~d~~v~iwd~~~ 273 (318)
+........+.... .......++|+|+|++ +++-...+.|..++...
T Consensus 254 ~~~~~~~~~~~~~~-~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 254 DFTTQETTPLFTIQ-DSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp ETTTTEEEEEEECS-SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred ECCCCcEEEEEEcC-CCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 45454422222221 1234678999999994 45556678899988764
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.037 Score=51.65 Aligned_cols=156 Identities=10% Similarity=-0.015 Sum_probs=85.6
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCC-cEEEEEeCCCcEEEE
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQ-VLLVTGSSDGSVRIW 162 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~-~~l~s~~~d~~v~iw 162 (318)
+.++++-...+.|+.+++...... ......+.........|++ ...+ +++++-...+.|.+.
T Consensus 436 ~~lY~sD~~~~~I~~~~l~g~~~~----------~~~~~vi~~~l~~P~GLAv-------D~~~~~LY~tD~~~~~I~v~ 498 (791)
T 3m0c_C 436 NRIYWSDLSQRMICSTQLDRAHGV----------SSYDTVISRDIQAPDGLAV-------DWIHSNIYWTDSVLGTVSVA 498 (791)
T ss_dssp TEEEEEETTTTEEEEEEC------------------CEEEECSSCSCCCEEEE-------ETTTTEEEEEETTTTEEEEE
T ss_pred CeeEEeeccceeEEEEeccCCCCC----------cceeEEEecCCCCcceeee-------eecCCcEEEEecCCCeEEEE
Confidence 356666666788888888642100 0111222222344567777 4444 556666667899999
Q ss_pred ECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCC-ceEEEEEeCC-CcEEEeeeccCCCeeeEeeeeec
Q 021036 163 DGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPR-LMLLAVGKGS-GSFDLWKCDISCNKFDKVGSYNA 240 (318)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~-~~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~ 240 (318)
++........+.. .......|+++ |. +.++++-..+ +.|.+. ++.......+ +..
T Consensus 499 ~ldG~~~~~l~~~--------------~l~~P~gIaVD-----p~~g~LYwtD~g~~~~I~~~--~~dG~~~~~l--v~~ 555 (791)
T 3m0c_C 499 DTKGVKRKTLFRE--------------NGSKPRAIVVD-----PVHGFMYWTDWGTPAKIKKG--GLNGVDIYSL--VTE 555 (791)
T ss_dssp ETTSSSEEEEEEC--------------TTCCEEEEEEE-----TTTTEEEEEECSSSCEEEEE--ETTSCCEEEE--ECS
T ss_pred eCCCCeEEEEEeC--------------CCCCcceEEEe-----cCCCCEEEecCCCCCeEEEE--ecCCCceEEE--EeC
Confidence 9875432222211 11246789998 66 4444443233 667776 4434331121 222
Q ss_pred ccCceeEEEEcCCCCEEEEe-cCCCcEEEEEecCCceeee
Q 021036 241 HDQVVTGLAWAFDGCCLYSC-SQDNFVRSWIFHGNSLSQV 279 (318)
Q Consensus 241 h~~~v~~~~~~~~~~~l~s~-~~d~~v~iwd~~~~~~~~~ 279 (318)
.-.....|++++.+..|+.+ .....|..+++.+.....+
T Consensus 556 ~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v 595 (791)
T 3m0c_C 556 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI 595 (791)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred CCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEE
Confidence 33467899999876655554 4557899999876555444
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.047 Score=49.65 Aligned_cols=189 Identities=11% Similarity=-0.026 Sum_probs=106.9
Q ss_pred eEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEEE
Q 021036 20 TVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLW 99 (318)
Q Consensus 20 ~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw 99 (318)
.+.-+....|+..++.+......+..... .....++|++.. +.++++-..++.|+.+
T Consensus 8 ~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~------~~~~~l~~d~~~-----------------~~lywtD~~~~~I~r~ 64 (628)
T 4a0p_A 8 FLLFSRRADIRRISLETNNNNVAIPLTGV------KEASALDFDVTD-----------------NRIYWTDISLKTISRA 64 (628)
T ss_dssp EEEEEETTEEEEEESSCTTCEEECCCCSC------SCEEEEEEETTT-----------------TEEEEEETTTTEEEEE
T ss_pred EEEEEeCCcEEEEECCCCCcceEEEcCCC------CceEEEEEECCC-----------------CEEEEEECCCCeEEEE
Confidence 44445778899999986543222221111 112347888766 4566666778889888
Q ss_pred EccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCC-CCcEEEEEeCCCcEEEEECCCcceeeeeccccc
Q 021036 100 RICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSN-PQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCV 178 (318)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~ 178 (318)
+++.... + ..+.........+++ .. .++++++-...+.|.+.++........+..
T Consensus 65 ~~~g~~~------------~--~v~~~g~~~P~GlAv-------D~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~--- 120 (628)
T 4a0p_A 65 FMNGSAL------------E--HVVEFGLDYPEGMAV-------DWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWK--- 120 (628)
T ss_dssp ETTSCSC------------E--EEECSSCSCCCEEEE-------ETTTTEEEEEETTTTEEEEEETTSTTCEEEECS---
T ss_pred ECCCCCc------------E--EEEeCCCCCcceEEE-------EeCCCEEEEEECCCCEEEEEecCCCcEEEEEeC---
Confidence 8875321 1 112211234566777 43 455556656678899999875432211111
Q ss_pred ccccceeeeeecccceeEEEEeeccCCCC-ceEEEEEe-CCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCE
Q 021036 179 PFSLLKEVVTVNTVPISVLSLILPVQSPR-LMLLAVGK-GSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCC 256 (318)
Q Consensus 179 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~~-~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 256 (318)
.-.....|+++ |. |.++.+-. ..+.|...+ +.......+. ..-.....+++++++..
T Consensus 121 -----------~l~~P~~iavd-----p~~G~lY~tD~g~~~~I~r~~--~dG~~~~~l~---~~~~~P~GlalD~~~~~ 179 (628)
T 4a0p_A 121 -----------DLDSPRALALD-----PAEGFMYWTEWGGKPKIDRAA--MDGSERTTLV---PNVGRANGLTIDYAKRR 179 (628)
T ss_dssp -----------SCCCEEEEEEE-----TTTTEEEEEECSSSCEEEEEE--TTSCSCEEEE---CSCSSEEEEEEETTTTE
T ss_pred -----------CCCCcccEEEc-----cCCCeEEEeCCCCCCEEEEEe--CCCCceEEEE---CCCCCcceEEEccccCE
Confidence 11245789998 64 55544432 245666664 4333322222 23456789999998665
Q ss_pred EEEe-cCCCcEEEEEecCCce
Q 021036 257 LYSC-SQDNFVRSWIFHGNSL 276 (318)
Q Consensus 257 l~s~-~~d~~v~iwd~~~~~~ 276 (318)
|..+ ...+.|..+|+.+...
T Consensus 180 LY~aD~~~~~I~~~d~dG~~~ 200 (628)
T 4a0p_A 180 LYWTDLDTNLIESSNMLGLNR 200 (628)
T ss_dssp EEEEETTTTEEEEEETTSCSC
T ss_pred EEEEECCCCEEEEEcCCCCce
Confidence 5554 5567899999876443
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=97.55 E-value=0.009 Score=53.85 Aligned_cols=56 Identities=16% Similarity=0.141 Sum_probs=34.6
Q ss_pred CCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCcee
Q 021036 217 SGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLS 277 (318)
Q Consensus 217 dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 277 (318)
+|.|..| |..+++ .+.+.... .++..-.....+.+++.++.|+.++.||.++++..
T Consensus 465 ~G~l~A~--D~~tG~--~~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~l 520 (582)
T 1flg_A 465 VGSLRAM--DPVSGK--VVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKEL 520 (582)
T ss_dssp SEEEEEE--CTTTCC--EEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cceEEEE--ECCCCC--EEEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEE
Confidence 5667777 666766 33333322 22222112224667888999999999999987754
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.019 Score=53.70 Aligned_cols=166 Identities=10% Similarity=0.043 Sum_probs=93.0
Q ss_pred cccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEE
Q 021036 74 PVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTG 153 (318)
Q Consensus 74 ~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~ 153 (318)
.|.++..++++.+.+ |+.++-+..++..+++. +...........|.++.. ..++.+.+ |
T Consensus 408 ~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~------------~~~~~~~~~~~~v~~i~~-------d~~g~lwi-g 466 (781)
T 3v9f_A 408 SVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKF------------QIIELEKNELLDVRVFYE-------DKNKKIWI-G 466 (781)
T ss_dssp BEEEEEECTTSCEEE-EETTEEEEEECSSSCEE------------EECCSTTTCCCCEEEEEE-------CTTSEEEE-E
T ss_pred ceEEEEECCCCCEEE-EeccCCEEEEcCCCCcE------------EEeccCCCCCCeEEEEEE-------CCCCCEEE-E
Confidence 344555555556555 66656688888876431 111100123467899988 67776554 4
Q ss_pred eCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeee
Q 021036 154 SSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFD 233 (318)
Q Consensus 154 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 233 (318)
+. +-|..+|..+++.......... ......|.++... ++|.+.+.....| +..| +..+.++.
T Consensus 467 t~-~Gl~~~~~~~~~~~~~~~~~~~---------~~~~~~i~~i~~d-----~~g~lWigt~~~G-l~~~--~~~~~~~~ 528 (781)
T 3v9f_A 467 TH-AGVFVIDLASKKVIHHYDTSNS---------QLLENFVRSIAQD-----SEGRFWIGTFGGG-VGIY--TPDMQLVR 528 (781)
T ss_dssp ET-TEEEEEESSSSSCCEEECTTTS---------SCSCSCEEEEEEC-----TTCCEEEEESSSC-EEEE--CTTCCEEE
T ss_pred EC-CceEEEeCCCCeEEecccCccc---------ccccceeEEEEEc-----CCCCEEEEEcCCC-EEEE--eCCCCeEE
Confidence 44 5688899877654322111100 0012367888887 7777555443345 6666 55555533
Q ss_pred Eeeeeec-ccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeee
Q 021036 234 KVGSYNA-HDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQV 279 (318)
Q Consensus 234 ~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~ 279 (318)
......+ ....|.++..+++|.+.++.. +|-|..||..++....+
T Consensus 529 ~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~~~~ 574 (781)
T 3v9f_A 529 KFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDYQVF 574 (781)
T ss_dssp EECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCCEEE
T ss_pred EccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcEEEc
Confidence 3221111 235688999888888655444 66558888877655443
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.065 Score=50.13 Aligned_cols=191 Identities=9% Similarity=-0.017 Sum_probs=106.6
Q ss_pred cccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEee-------eccccccEEEEEeeeecCCCCCC
Q 021036 74 PVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGL-------FQAHNSWITSISLAVLSSDSSNP 146 (318)
Q Consensus 74 ~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-------~~~h~~~v~~~~~~p~~~~~~~~ 146 (318)
.|.++..+.+|.+. .|+.++-|..++..++.. ..... .......|.++.. ..+
T Consensus 314 ~v~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~~------------~~~~~~~~~~~~~~l~~~~v~~i~~-------d~~ 373 (781)
T 3v9f_A 314 SARYIFQDSFNNIW-IGTWGGGINFISNAPPTF------------HTWSYSPTQMNESSLSNKVVSSVCD-------DGQ 373 (781)
T ss_dssp CEEEEEECSSCCEE-EEEBSSCEEEECSSCCSC------------EEEC----CCCSSCCSSSCEEEEEE-------CTT
T ss_pred eEEEEEEeCCCCEE-EEecCCeEEEeCCCCCcc------------eeeccCccccccCCCCCcceEEEEE-------cCC
Confidence 35555555556654 466566688888775432 11110 0112356899988 666
Q ss_pred CcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeec
Q 021036 147 QVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCD 226 (318)
Q Consensus 147 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~ 226 (318)
|. |..|+.++-|..||..+++... +.... ......|.++... +++.+. .|+.++-+..| +
T Consensus 374 g~-lWigt~~~Gl~~~~~~~~~~~~-~~~~~----------~~~~~~v~~i~~d-----~~g~lW-igt~~~Gl~~~--~ 433 (781)
T 3v9f_A 374 GK-LWIGTDGGGINVFENGKRVAIY-NKENR----------ELLSNSVLCSLKD-----SEGNLW-FGTYLGNISYY--N 433 (781)
T ss_dssp SC-EEEEEBSSCEEEEETTEEEEEC-C---------------CCCSBEEEEEEC-----TTSCEE-EEETTEEEEEE--C
T ss_pred CC-EEEEeCCCcEEEEECCCCeEEE-ccCCC----------CCCCcceEEEEEC-----CCCCEE-EEeccCCEEEE--c
Confidence 65 4456666778889887543221 11000 1123467888876 666654 46665667777 6
Q ss_pred cCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEE
Q 021036 227 ISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAV 306 (318)
Q Consensus 227 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 306 (318)
..+++++...........|.++...++|.+.+ |+. +-|..||..++....+....... .....|.++..
T Consensus 434 ~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~---------~~~~~i~~i~~ 502 (781)
T 3v9f_A 434 TRLKKFQIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQ---------LLENFVRSIAQ 502 (781)
T ss_dssp SSSCEEEECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSS---------CSCSCEEEEEE
T ss_pred CCCCcEEEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCcccc---------cccceeEEEEE
Confidence 66665433211011345788998888887544 344 56888998776654433221100 01236778888
Q ss_pred cCCCcEEEE
Q 021036 307 SPGNLVVAM 315 (318)
Q Consensus 307 sp~~~~l~~ 315 (318)
.++|.+.+.
T Consensus 503 d~~g~lWig 511 (781)
T 3v9f_A 503 DSEGRFWIG 511 (781)
T ss_dssp CTTCCEEEE
T ss_pred cCCCCEEEE
Confidence 777765443
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0014 Score=60.40 Aligned_cols=153 Identities=8% Similarity=-0.065 Sum_probs=79.4
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCC-CCCcEEEEEeCCCcEEEEE
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSS-NPQVLLVTGSSDGSVRIWD 163 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~-~~~~~l~s~~~d~~v~iwd 163 (318)
.++++-...+.|+.+++...... ......+.........|++ . ..+.++++-...+.|.+.+
T Consensus 419 ~Ly~sD~~~~~I~~~~~~g~~~~----------~~~~~~i~~~~~~P~glav-------D~~~g~LY~tD~~~~~I~v~d 481 (699)
T 1n7d_A 419 RIYWSDLSQRMICSTQLDRAHGV----------SSYDTVISRDIQAPDGLAV-------DWIHSNIYWTDSVLGTVSVAD 481 (699)
T ss_dssp EEEECCTTTTSBEEEESCCCCC-----------CCCCCBCCSCC--CCCEEC-------CCSSSBCEECCTTTSCEEEEB
T ss_pred eEEEEecCCCeEEEEecCCCCCC----------cceEEEEeCCCCCcceEEE-------EeeCCcEEEEeccCCeEEEEe
Confidence 44444455678888888741000 0001111111122345666 4 3455556555678899998
Q ss_pred CCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe-CC-CcEEEeeeccCCCeeeEeeeeecc
Q 021036 164 GYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK-GS-GSFDLWKCDISCNKFDKVGSYNAH 241 (318)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~-~d-g~i~vw~~~~~~~~~~~~~~~~~h 241 (318)
+........+... ......|+++ |.+..|+.+. .. +.|.+++++-...+ .+. ...
T Consensus 482 ~dg~~~~~l~~~~--------------~~~P~giavD-----p~~g~ly~td~~~~~~I~~~~~dG~~~~--~l~--~~~ 538 (699)
T 1n7d_A 482 TKGVKRKTLFREQ--------------GSKPRAIVVD-----PVHGFMYWTDWGTPAKIKKGGLNGVDIY--SLV--TEN 538 (699)
T ss_dssp SSSCCEEEECCCS--------------SCCCCCEECC-----SSSSCCEECCCSSSCCEEBCCSSSCCCC--EES--CSS
T ss_pred cCCCceEEEEeCC--------------CCCcceEEEc-----cCCCcEEEcccCCCCeEEEEeCCCCCee--EEE--eCC
Confidence 8754332222111 1134677887 6544444443 23 67877744322211 111 112
Q ss_pred cCceeEEEEcCCCC-EEEEecCCCcEEEEEecCCcee
Q 021036 242 DQVVTGLAWAFDGC-CLYSCSQDNFVRSWIFHGNSLS 277 (318)
Q Consensus 242 ~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~ 277 (318)
-.....|+|+|++. ++++-+..+.|..+++.+....
T Consensus 539 l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~ 575 (699)
T 1n7d_A 539 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK 575 (699)
T ss_dssp CSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCE
T ss_pred CCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceE
Confidence 23457899999755 4455566778999998764433
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.035 Score=50.14 Aligned_cols=27 Identities=22% Similarity=0.170 Sum_probs=22.8
Q ss_pred cEEEEEeCCCcEEEEECCCcceeeeec
Q 021036 148 VLLVTGSSDGSVRIWDGYIQELQKSAE 174 (318)
Q Consensus 148 ~~l~s~~~d~~v~iwd~~~~~~~~~~~ 174 (318)
..++.++.+|.+.++|.++|+.+....
T Consensus 324 ~~v~~~~~~G~l~~lD~~tG~~lw~~~ 350 (599)
T 1w6s_A 324 KLLTHPDRNGIVYTLDRTDGALVSANK 350 (599)
T ss_dssp EEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEECCCcEEEEEECCCCCEeeccc
Confidence 567788999999999999998876654
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.027 Score=44.73 Aligned_cols=156 Identities=9% Similarity=0.017 Sum_probs=85.8
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEe-ee--ccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEE
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIG-LF--QAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRI 161 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~-~~--~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~i 161 (318)
.++++.-.++.+.++++........ ..... .+ .........|+| .+.++.|.++.......+
T Consensus 82 ~~~vs~E~~~~l~~~~v~~~~~i~~--------~~~~~~~~~~~~~N~g~EGLA~-------d~~~~~L~va~E~~p~~i 146 (255)
T 3qqz_A 82 QFVISDERDYAIYVISLTPNSEVKI--------LKKIKIPLQESPTNCGFEGLAY-------SRQDHTFWFFKEKNPIEV 146 (255)
T ss_dssp EEEEEETTTTEEEEEEECTTCCEEE--------EEEEECCCSSCCCSSCCEEEEE-------ETTTTEEEEEEESSSEEE
T ss_pred EEEEEECCCCcEEEEEcCCCCeeee--------eeeeccccccccccCCcceEEE-------eCCCCEEEEEECcCCceE
Confidence 7767766778899998875432100 01111 01 123455789999 777766666665555555
Q ss_pred EECCC---cceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeee
Q 021036 162 WDGYI---QELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSY 238 (318)
Q Consensus 162 wd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 238 (318)
|.+.. ...+..+.... +. .......+..++++ |..+.+++....+..+..+ |.... ......+
T Consensus 147 ~~~~g~~~~~~l~i~~~~~--~~-----~~~~~~d~S~l~~d----p~tg~lliLS~~s~~L~~~--d~~g~-~~~~~~L 212 (255)
T 3qqz_A 147 YKVNGLLSSNELHISKDKA--LQ-----RQFTLDDVSGAEFN----QQKNTLLVLSHESRALQEV--TLVGE-VIGEMSL 212 (255)
T ss_dssp EEEESTTCSSCCEEEECHH--HH-----HTCCSSCCCEEEEE----TTTTEEEEEETTTTEEEEE--CTTCC-EEEEEEC
T ss_pred EEEcccccCCceeeecchh--hc-----cccccCCceeEEEc----CCCCeEEEEECCCCeEEEE--cCCCC-EEEEEEc
Confidence 55541 11111111000 00 00112356889999 4567777777777878887 54443 2233344
Q ss_pred ec-c------cCceeEEEEcCCCCEEEEecCCCcEEEEE
Q 021036 239 NA-H------DQVVTGLAWAFDGCCLYSCSQDNFVRSWI 270 (318)
Q Consensus 239 ~~-h------~~~v~~~~~~~~~~~l~s~~~d~~v~iwd 270 (318)
.. . -.....|+|+++|++.++ ++-+.++.|.
T Consensus 213 ~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~ 250 (255)
T 3qqz_A 213 TKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFT 250 (255)
T ss_dssp STTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEE
T ss_pred CCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEE
Confidence 32 1 125689999999985444 6666666664
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.45 E-value=0.034 Score=45.78 Aligned_cols=165 Identities=7% Similarity=-0.066 Sum_probs=92.6
Q ss_pred CcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCC-CcEEEEEeCCCcEEEEECCCc---ce
Q 021036 94 GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNP-QVLLVTGSSDGSVRIWDGYIQ---EL 169 (318)
Q Consensus 94 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~---~~ 169 (318)
..|+..++.+.+. ...+. .......++| .+. +.++++-...+.|..+++... ..
T Consensus 10 ~~I~~i~~~~~~~--------------~~~~~-~~~~p~g~~~-------d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~ 67 (316)
T 1ijq_A 10 HEVRKMTLDRSEY--------------TSLIP-NLRNVVALDT-------EVASNRIYWSDLSQRMICSTQLDRAHGVSS 67 (316)
T ss_dssp SSEEEEETTSCCC--------------EEEEC-SCSSEEEEEE-------ETTTTEEEEEETTTTEEEEEEC--------
T ss_pred CeEEEEECCCcce--------------Eehhc-CCCceEEEEE-------EeCCCEEEEEECCCCcEEEEECCCCCCCcc
Confidence 4688889887542 12222 2446788999 554 455566666789999998751 11
Q ss_pred eeeecccccccccceeeeeecccceeEEEEeeccCCC-CceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEE
Q 021036 170 QKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSP-RLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGL 248 (318)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~ 248 (318)
...+.. ........++++ + .++++++-...+.|.+++.+ ......+ ..........+
T Consensus 68 ~~~~~~-------------~~~~~p~glavd-----~~~~~ly~~d~~~~~I~~~~~~--g~~~~~~--~~~~~~~P~~i 125 (316)
T 1ijq_A 68 YDTVIS-------------RDIQAPDGLAVD-----WIHSNIYWTDSVLGTVSVADTK--GVKRKTL--FRENGSKPRAI 125 (316)
T ss_dssp CEEEEC-------------SSCSCCCEEEEE-----TTTTEEEEEETTTTEEEEEETT--SSSEEEE--EECTTCCEEEE
T ss_pred cEEEEe-------------CCCCCcCEEEEe-----ecCCeEEEEECCCCEEEEEeCC--CCceEEE--EECCCCCcceE
Confidence 111110 011244678887 5 45666666678889998543 3321122 22233456899
Q ss_pred EEcCCCCEEEEecC-C-CcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 249 AWAFDGCCLYSCSQ-D-NFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 249 ~~~~~~~~l~s~~~-d-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
+++|.+..|+.+.. . +.|...++.+.....+... .. ...++++++|++..|..+
T Consensus 126 avdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~-~~-------------~~P~gla~d~~~~~lY~~ 181 (316)
T 1ijq_A 126 VVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE-NI-------------QWPNGITLDLLSGRLYWV 181 (316)
T ss_dssp EEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS-SC-------------SCEEEEEEETTTTEEEEE
T ss_pred EeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEEC-CC-------------CCceEEEEeccCCEEEEE
Confidence 99997665544433 2 6788888765443322211 11 145788888876665544
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.048 Score=47.17 Aligned_cols=155 Identities=5% Similarity=0.006 Sum_probs=85.5
Q ss_pred ccccccCCCCC---ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcE
Q 021036 73 YPVPQNGSSNW---FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVL 149 (318)
Q Consensus 73 ~~v~~~~~s~~---~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~ 149 (318)
.....++++++ +.++++ ...+.|+.++..++. +..+.........+++ .++|++
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~-D~~~~I~~id~~~g~---------------v~~~~~~~~~P~giav-------d~dG~l 195 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWV-GQRDAFRHVDFVNQY---------------VDIKTTNIGQCADVNF-------TLNGDM 195 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEE-CBTSCEEEEETTTTE---------------EEEECCCCSCEEEEEE-------CTTCCE
T ss_pred CCCceEEEccccCCCEEEEE-eCCCCEEEEECCCCE---------------EEEeecCCCCccEEEE-------CCCCCE
Confidence 34456677763 454444 333889999987643 2233334456789999 888885
Q ss_pred EEEEeCC---Cc-EEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCC-CceEEEEEeCCCcEEEee
Q 021036 150 LVTGSSD---GS-VRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSP-RLMLLAVGKGSGSFDLWK 224 (318)
Q Consensus 150 l~s~~~d---~~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~-~~~~l~~~~~dg~i~vw~ 224 (318)
+++.... .. +...+...+ .... .. .........++++ | ++.++++-..++.|+.+
T Consensus 196 yVad~~~~~~~~gv~~~~~~~~-~~~~------------~~-~~~~~~P~giavd-----~~~G~lyv~d~~~~~V~~~- 255 (433)
T 4hw6_A 196 VVVDDQSSDTNTGIYLFTRASG-FTER------------LS-LCNARGAKTCAVH-----PQNGKIYYTRYHHAMISSY- 255 (433)
T ss_dssp EEEECCSCTTSEEEEEECGGGT-TCCE------------EE-EEECSSBCCCEEC-----TTTCCEEECBTTCSEEEEE-
T ss_pred EEEcCCCCcccceEEEEECCCC-eecc------------cc-ccccCCCCEEEEe-----CCCCeEEEEECCCCEEEEE-
Confidence 5544321 11 222222111 1000 00 0012234567888 7 67766666677888887
Q ss_pred eccCCCee-eEeeeeecccCceeEEEEcCCCCE-EEEecCCCcEEEEEec
Q 021036 225 CDISCNKF-DKVGSYNAHDQVVTGLAWAFDGCC-LYSCSQDNFVRSWIFH 272 (318)
Q Consensus 225 ~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~-l~s~~~d~~v~iwd~~ 272 (318)
+..++.. ..+.... ....-..++|+|++++ +++-...+.|+.++..
T Consensus 256 -d~~~g~~~~~~~~~~-~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 256 -DPATGTLTEEEVMMD-TKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp -CTTTCCEEEEEEECS-CCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred -ECCCCeEEEEEeccC-CCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 5554442 1222111 1222346999999984 4555567889998875
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.44 E-value=0.045 Score=46.78 Aligned_cols=166 Identities=6% Similarity=-0.083 Sum_probs=94.5
Q ss_pred CCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCC-CCcEEEEEeCCCcEEEEECCCcc---
Q 021036 93 SGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSN-PQVLLVTGSSDGSVRIWDGYIQE--- 168 (318)
Q Consensus 93 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~--- 168 (318)
...|+..++...+. ..+......+..|+| .+ ++.++.+-...+.|+.+++....
T Consensus 91 ~~~I~~i~l~~~~~---------------~~~~~~~~~~~~l~~-------d~~~~~lywsD~~~~~I~~~~~~g~~~~~ 148 (400)
T 3p5b_L 91 RHEVRKMTLDRSEY---------------TSLIPNLRNVVALDT-------EVASNRIYWSDLSQRMICSTQLDRAHGVS 148 (400)
T ss_dssp TTEEEEECTTSCSC---------------EEEECSCSCEEEEEE-------ETTTTEEEEEETTTTEEEEEEC------C
T ss_pred cceeEEEccCCcce---------------eEeccccCcceEEee-------eeccCceEEEecCCCeEEEEEcccCCCCC
Confidence 36788888876431 112233456789999 54 45555555567888888886522
Q ss_pred eeeeecccccccccceeeeeecccceeEEEEeeccCCC-CceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeE
Q 021036 169 LQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSP-RLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTG 247 (318)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~ 247 (318)
....+. .........++++ + .++++++-...+.|.+. ++....... .+.........
T Consensus 149 ~~~~~~-------------~~~~~~p~glavD-----~~~~~lY~~d~~~~~I~~~--~~~g~~~~~--l~~~~~~~P~~ 206 (400)
T 3p5b_L 149 SYDTVI-------------SRDIQAPDGLAVD-----WIHSNIYWTDSVLGTVSVA--DTKGVKRKT--LFRENGSKPRA 206 (400)
T ss_dssp CCEEEE-------------CSSCSCEEEEEEE-----TTTTEEEEEETTTTEEEEE--CTTTCSEEE--EEECSSCCEEE
T ss_pred cceEEE-------------eCCCCCcccEEEE-----ecCCceEEEECCCCeEEEE--eCCCCceEE--EEeCCCCCcce
Confidence 111111 1111245688888 5 56666676678888887 444433212 12223345789
Q ss_pred EEEcCCCCEEEEec--CCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 248 LAWAFDGCCLYSCS--QDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 248 ~~~~~~~~~l~s~~--~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
++++|.+.+|+... ..+.|...++.+.....+.... . ...++|+++|++..|..+
T Consensus 207 iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~-l-------------~~P~glavd~~~~~lY~a 263 (400)
T 3p5b_L 207 IVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN-I-------------QWPNGITLDLLSGRLYWV 263 (400)
T ss_dssp EEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSS-C-------------SCEEEEEEETTTTEEEEE
T ss_pred EEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECC-C-------------CceEEEEEEeCCCEEEEE
Confidence 99999766555443 2477888888765443332111 1 145788888876666544
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.051 Score=49.36 Aligned_cols=194 Identities=9% Similarity=-0.034 Sum_probs=103.2
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEE
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVS 97 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~ 97 (318)
.|++.=.....|++.++........+...... ....++|++.. +.++++-...+.|.
T Consensus 9 ~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~------~~~~ld~~~~~-----------------~~ly~sD~~~~~I~ 65 (619)
T 3s94_A 9 APLLLYANRRDLRLVDATNGKENATIVVGGLE------DAAAVDFVFSH-----------------GLIYWSDVSEEAIK 65 (619)
T ss_dssp -CCEEEECSSBEEEECCC---------CBCCS------CEEEEEEETTT-----------------TEEEEEETTTTEEE
T ss_pred CceEEEeccccEEEEeCCCCcceEEEEEcCCC------ceEEEEEEeCC-----------------CEEEEEECCCCeEE
Confidence 35666777888999988764311112111111 12337777766 34555555677888
Q ss_pred EEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCC-CCcEEEEEeCCCcEEEEECCCcceeeeeccc
Q 021036 98 LWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSN-PQVLLVTGSSDGSVRIWDGYIQELQKSAEAH 176 (318)
Q Consensus 98 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 176 (318)
.++.+.... ....+.........+++ .. .++++++-...+.|.+.++........+...
T Consensus 66 r~~~~g~~~-------------~~~v~~~~~~~P~GlAv-------D~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~ 125 (619)
T 3s94_A 66 RTEFNKTES-------------VQNVVVSGLLSPDGLAC-------DWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQE 125 (619)
T ss_dssp EEEC------------------CEEEECSSCSCEEEEEE-------ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS
T ss_pred EEEccCCCc-------------eEEEEeCCCCCcCeEEE-------EecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCC
Confidence 888865310 11122222246788888 55 4555666666789999998754322222111
Q ss_pred ccccccceeeeeecccceeEEEEeeccCCCC-ceEEEEEe-CCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCC
Q 021036 177 CVPFSLLKEVVTVNTVPISVLSLILPVQSPR-LMLLAVGK-GSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDG 254 (318)
Q Consensus 177 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~-~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 254 (318)
......|+++ |. |.++++-- ..+.|... ++.......+. ...-.....+++++++
T Consensus 126 --------------l~~P~~Iavd-----p~~g~ly~tD~g~~~~I~r~--~~dG~~~~~l~--~~~~~~P~Glald~~~ 182 (619)
T 3s94_A 126 --------------LDQPRAIALD-----PSSGFMYWTDWGEVPKIERA--GMDGSSRFIII--NSEIYWPNGLTLDYEE 182 (619)
T ss_dssp --------------CSCCCCEEEE-----TTTTEEEEEECSSSCEEEEE--ETTSCSCEEEE--CSSCSSEEEEEEETTT
T ss_pred --------------CCCCceEEEe-----cCCCeEEEeccCCCCEEEEE--ECCCCceEEEE--eCCCCCCcEEEEEccC
Confidence 1245688998 65 44444432 23556555 33333211221 1223456899999976
Q ss_pred CEEEEe-cCCCcEEEEEecCCcee
Q 021036 255 CCLYSC-SQDNFVRSWIFHGNSLS 277 (318)
Q Consensus 255 ~~l~s~-~~d~~v~iwd~~~~~~~ 277 (318)
..|+.+ ...+.|..+|+.+....
T Consensus 183 ~~LY~aD~~~~~I~~~~~dG~~~~ 206 (619)
T 3s94_A 183 QKLYWADAKLNFIHKSNLDGTNRQ 206 (619)
T ss_dssp TEEEEEETTTCCEEEESSSCCEEC
T ss_pred CEEEEEeCCCCeEEEecCCCCccE
Confidence 655444 55678888888764443
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.055 Score=43.99 Aligned_cols=152 Identities=16% Similarity=0.133 Sum_probs=81.3
Q ss_pred ccEEEEecCCC-----cEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCC--
Q 021036 84 FSILAVGGRSG-----KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSD-- 156 (318)
Q Consensus 84 ~~~l~~g~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d-- 156 (318)
+++++.|+.++ .+.+||..+.+. ..+..+......-..+.+ ++++++.|+.+
T Consensus 113 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W------------~~~~~~p~~r~~~~~~~~---------~~~iyv~GG~~~~ 171 (301)
T 2vpj_A 113 DMIYVSGGFDGSRRHTSMERYDPNIDQW------------SMLGDMQTAREGAGLVVA---------SGVIYCLGGYDGL 171 (301)
T ss_dssp TEEEEECCBCSSCBCCEEEEEETTTTEE------------EEEEECSSCCBSCEEEEE---------TTEEEEECCBCSS
T ss_pred CEEEEEcccCCCcccceEEEEcCCCCeE------------EECCCCCCCcccceEEEE---------CCEEEEECCCCCC
Confidence 46777776543 577888876552 222222211111122222 56677777754
Q ss_pred ---CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCC-----CcEEEeeeccC
Q 021036 157 ---GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGS-----GSFDLWKCDIS 228 (318)
Q Consensus 157 ---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~d-----g~i~vw~~~~~ 228 (318)
..+.+||+.+.+-...-.... ...-..+.. -++.+++.|+.+ ..+.+| |..
T Consensus 172 ~~~~~~~~~d~~~~~W~~~~~~p~-------------~r~~~~~~~------~~~~i~v~GG~~~~~~~~~v~~y--d~~ 230 (301)
T 2vpj_A 172 NILNSVEKYDPHTGHWTNVTPMAT-------------KRSGAGVAL------LNDHIYVVGGFDGTAHLSSVEAY--NIR 230 (301)
T ss_dssp CBCCCEEEEETTTTEEEEECCCSS-------------CCBSCEEEE------ETTEEEEECCBCSSSBCCCEEEE--ETT
T ss_pred cccceEEEEeCCCCcEEeCCCCCc-------------ccccceEEE------ECCEEEEEeCCCCCcccceEEEE--eCC
Confidence 458888887664332211100 001112222 356788888764 356777 777
Q ss_pred CCeeeEeeeeecccCceeEEEEcCCCCEEEEecCC-----CcEEEEEecCCceeee
Q 021036 229 CNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQD-----NFVRSWIFHGNSLSQV 279 (318)
Q Consensus 229 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-----~~v~iwd~~~~~~~~~ 279 (318)
+.++..+..+.........+.+ ++++++.|+.+ ..+.+||+.++....+
T Consensus 231 ~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 284 (301)
T 2vpj_A 231 TDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDSWEVV 284 (301)
T ss_dssp TTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTEEEEE
T ss_pred CCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCeEEEc
Confidence 8887766544322222222222 56777777765 4578888887666544
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.076 Score=44.11 Aligned_cols=197 Identities=12% Similarity=0.105 Sum_probs=107.5
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccE-EEEecC--
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSI-LAVGGR-- 92 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~-l~~g~~-- 92 (318)
..+.++...+.+.+.++|+ +++.++.+.... -.. +..-|...+.+... .+ +++.-.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~g~---~nn------VD~r~~~~l~g~~~-----------dla~as~R~~~ 97 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNTGK---LNN------VDIRYDFPLNGKKV-----------DIAAASNRSEG 97 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECCSC---EEE------EEEEEEEEETTEEE-----------EEEEEEECSTT
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccCCC---ccc------EEEecccccCCceE-----------eEEEEeCCCCC
Confidence 3444677778889999999 787777664311 111 22222110000000 13 333334
Q ss_pred CCcEEEEEccCCccccccccccCCceeEEeeec-------cccccEEEEEeeeecCCCCCCC-cEEEEEeCCCcEEEEEC
Q 021036 93 SGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQ-------AHNSWITSISLAVLSSDSSNPQ-VLLVTGSSDGSVRIWDG 164 (318)
Q Consensus 93 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-------~h~~~v~~~~~~p~~~~~~~~~-~~l~s~~~d~~v~iwd~ 164 (318)
+++|.+|++.... ..+..+. .-...+..+++- . +...+ .++++...+|.+..|++
T Consensus 98 ~n~l~vf~iDp~~-------------~~l~~i~~~~~pv~t~~~~pyGlcly--~--~~~~g~~yafV~~k~G~~~q~~l 160 (355)
T 3amr_A 98 KNTIEIYAIDGKN-------------GTLQSMTDPDHPIATAINEVYGFTLY--H--SQKTGKYYAMVTGKEGEFEQYEL 160 (355)
T ss_dssp CCEEEEEEECTTT-------------CCEEECSCTTSCEECCCSSCCCEEEE--E--CTTTCCEEEEEECSSSEEEEEEE
T ss_pred CCeEEEEEECCCC-------------CceeeccccccCcCCCCCCeeEEEEE--e--cCCCCcEEEEEECCCCeEEEEEE
Confidence 5789999874211 0112221 111344555541 0 02234 36888888999999988
Q ss_pred C---Cc----ceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccC--CC-eeeE
Q 021036 165 Y---IQ----ELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDIS--CN-KFDK 234 (318)
Q Consensus 165 ~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~--~~-~~~~ 234 (318)
. .+ +.+..+... ..+..+.+. +....|+.+-.+.- ||.++.+ .. +...
T Consensus 161 ~~~~~g~~~~~lVR~f~lg---------------sq~EgcvvD-----d~~g~Lyv~eEd~G--Iw~~da~p~~~~~~~~ 218 (355)
T 3amr_A 161 KADKNGYISGKKVRAFKMN---------------SQTEGMAAD-----DEYGRLYIAEEDEA--IWKFSAEPDGGSNGTV 218 (355)
T ss_dssp EECTTSCEEEEEEEEEECS---------------SCEEEEEEE-----TTTTEEEEEETTTE--EEEEECSTTSCSCCEE
T ss_pred EeCCCCcccceEEEEecCC---------------CCcceEEEc-----CCCCeEEEecccce--EEEEeCCcCCCCCceE
Confidence 3 22 333444322 256788888 77888888888755 5555533 21 1224
Q ss_pred eeeee-c-ccCceeEEEE--cCCCC-EEEEec-CCCcEEEEEec
Q 021036 235 VGSYN-A-HDQVVTGLAW--AFDGC-CLYSCS-QDNFVRSWIFH 272 (318)
Q Consensus 235 ~~~~~-~-h~~~v~~~~~--~~~~~-~l~s~~-~d~~v~iwd~~ 272 (318)
+..+. + -...+..|+. .++++ +|++++ .+.+..+||..
T Consensus 219 v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 219 IDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 44332 2 2246888887 45555 555444 67799999996
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.02 Score=47.08 Aligned_cols=160 Identities=16% Similarity=0.091 Sum_probs=89.7
Q ss_pred cccEEEEEeeeecCCCCC-CCcEEEEEeCCCcEEEEECCCcceeee-ecccccccccceeeeeecccceeEEEE---eec
Q 021036 128 NSWITSISLAVLSSDSSN-PQVLLVTGSSDGSVRIWDGYIQELQKS-AEAHCVPFSLLKEVVTVNTVPISVLSL---ILP 202 (318)
Q Consensus 128 ~~~v~~~~~~p~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~l~~---~~~ 202 (318)
...-.+++| .. ++.++++.-..++|..||...+..... +..-..+. .....+..|.+ .
T Consensus 12 ~~yPE~~~w-------d~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g--------~~~~~~sGl~~~~~D-- 74 (334)
T 2p9w_A 12 NLTPEDTIY-------DRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNG--------DGEQQMSGLSLLTHD-- 74 (334)
T ss_dssp TCCCSCEEE-------ETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSS--------CCSEEEEEEEESSSS--
T ss_pred ccCCcCccC-------cCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccC--------CCcceeeEEEEeccC--
Confidence 334456788 44 455555555799999999875543332 11100000 00113467888 6
Q ss_pred cCCCCceEEEEEe-------------CCCcEEEeeeccC-CCeeeEeeeeeccc-----------CceeEEEEcCCCCEE
Q 021036 203 VQSPRLMLLAVGK-------------GSGSFDLWKCDIS-CNKFDKVGSYNAHD-----------QVVTGLAWAFDGCCL 257 (318)
Q Consensus 203 ~~~~~~~~l~~~~-------------~dg~i~vw~~~~~-~~~~~~~~~~~~h~-----------~~v~~~~~~~~~~~l 257 (318)
|++.++++.. .+..+..||++.. +++......+.... .....++..++|+..
T Consensus 75 ---~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaY 151 (334)
T 2p9w_A 75 ---NSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSY 151 (334)
T ss_dssp ---SCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEE
T ss_pred ---CCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEE
Confidence 6777777644 2566888844310 33321222222111 247889999999988
Q ss_pred EEecCC-CcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 258 YSCSQD-NFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 258 ~s~~~d-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
++++.. +.|...+..+............ .......++++++|+|..|++.
T Consensus 152 Vt~s~~~~~I~rV~pdG~~~~~~~~~~~~---------~~~~~G~nGIv~~pdg~~Liv~ 202 (334)
T 2p9w_A 152 VAFALGMPAIARVSADGKTVSTFAWESGN---------GGQRPGYSGITFDPHSNKLIAF 202 (334)
T ss_dssp EEEEESSCEEEEECTTSCCEEEEEECCCC---------SSSCCSCSEEEEETTTTEEEEE
T ss_pred EeCCCCCCeEEEEeCCCCEEeeeeecCCC---------cccccCcceEEEeCCCCEEEEE
Confidence 888887 8877776655433322111100 0011246799999999887764
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.067 Score=43.52 Aligned_cols=153 Identities=17% Similarity=0.163 Sum_probs=81.3
Q ss_pred ccEEEEecCCC-----cEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCC-
Q 021036 84 FSILAVGGRSG-----KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDG- 157 (318)
Q Consensus 84 ~~~l~~g~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~- 157 (318)
+.+++.|+.++ .+.+||..+.+. ..+..+......-..+.+ ++.+++.|+.++
T Consensus 62 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W------------~~~~~~p~~r~~~~~~~~---------~~~iyv~GG~~~~ 120 (302)
T 2xn4_A 62 GLVFAVGGFNGSLRVRTVDSYDPVKDQW------------TSVANMRDRRSTLGAAVL---------NGLLYAVGGFDGS 120 (302)
T ss_dssp TEEEEESCBCSSSBCCCEEEEETTTTEE------------EEECCCSSCCBSCEEEEE---------TTEEEEEEEECSS
T ss_pred CEEEEEeCcCCCccccceEEECCCCCce------------eeCCCCCccccceEEEEE---------CCEEEEEcCCCCC
Confidence 46777777543 477888877552 222222221112222233 456777777553
Q ss_pred ----cEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCC-------CcEEEeeec
Q 021036 158 ----SVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGS-------GSFDLWKCD 226 (318)
Q Consensus 158 ----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~d-------g~i~vw~~~ 226 (318)
.+.+||+.+.+-...-..... . .-..++. -++.+++.|+.+ ..+.+| |
T Consensus 121 ~~~~~~~~~d~~~~~W~~~~~~p~~------------r-~~~~~~~------~~~~iyv~GG~~~~~~~~~~~~~~y--d 179 (302)
T 2xn4_A 121 TGLSSVEAYNIKSNEWFHVAPMNTR------------R-SSVGVGV------VGGLLYAVGGYDVASRQCLSTVECY--N 179 (302)
T ss_dssp CEEEEEEEEETTTTEEEEECCCSSC------------C-BSCEEEE------ETTEEEEECCEETTTTEECCCEEEE--E
T ss_pred ccCceEEEEeCCCCeEeecCCCCCc------------c-cCceEEE------ECCEEEEEeCCCCCCCccccEEEEE--e
Confidence 477788776543322111000 0 1112223 256777777643 346666 7
Q ss_pred cCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCC-----CcEEEEEecCCceeeee
Q 021036 227 ISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQD-----NFVRSWIFHGNSLSQVS 280 (318)
Q Consensus 227 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-----~~v~iwd~~~~~~~~~~ 280 (318)
..+.++..+..+.........+.+ ++++++.|+.+ ..+.+||+.+.....+.
T Consensus 180 ~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 236 (302)
T 2xn4_A 180 ATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVA 236 (302)
T ss_dssp TTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEEC
T ss_pred CCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCC
Confidence 777777666544322222222222 56777777764 46889999887766554
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.078 Score=43.20 Aligned_cols=153 Identities=8% Similarity=0.039 Sum_probs=81.6
Q ss_pred ccEEEEecCC----CcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCC---
Q 021036 84 FSILAVGGRS----GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSD--- 156 (318)
Q Consensus 84 ~~~l~~g~~d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d--- 156 (318)
+.+++.|+.+ ..+.+||..+++. ..+..+......-..+.+ ++++++.|+.+
T Consensus 56 ~~lyv~GG~~~~~~~~~~~~d~~~~~W------------~~~~~~p~~r~~~~~~~~---------~~~iyv~GG~~~~~ 114 (306)
T 3ii7_A 56 NVVYILGGSQLFPIKRMDCYNVVKDSW------------YSKLGPPTPRDSLAACAA---------EGKIYTSGGSEVGN 114 (306)
T ss_dssp TEEEEECCBSSSBCCEEEEEETTTTEE------------EEEECCSSCCBSCEEEEE---------TTEEEEECCBBTTB
T ss_pred CEEEEEeCCCCCCcceEEEEeCCCCeE------------EECCCCCccccceeEEEE---------CCEEEEECCCCCCC
Confidence 3677777754 5677888877652 222222211112222223 56677777765
Q ss_pred ---CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeC---------CCcEEEee
Q 021036 157 ---GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKG---------SGSFDLWK 224 (318)
Q Consensus 157 ---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~---------dg~i~vw~ 224 (318)
..+.+||..+.+-...-..... . .-..++. -++++++.|+. -..+.+|
T Consensus 115 ~~~~~~~~~d~~~~~W~~~~~~p~~------------r-~~~~~~~------~~~~iyv~GG~~~~~~~~~~~~~~~~y- 174 (306)
T 3ii7_A 115 SALYLFECYDTRTESWHTKPSMLTQ------------R-CSHGMVE------ANGLIYVCGGSLGNNVSGRVLNSCEVY- 174 (306)
T ss_dssp SCCCCEEEEETTTTEEEEECCCSSC------------C-BSCEEEE------ETTEEEEECCEESCTTTCEECCCEEEE-
T ss_pred cEeeeEEEEeCCCCceEeCCCCcCC------------c-ceeEEEE------ECCEEEEECCCCCCCCcccccceEEEe-
Confidence 4688888887643322111000 0 1112222 35677777763 2346676
Q ss_pred eccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCC-----CcEEEEEecCCceeeee
Q 021036 225 CDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQD-----NFVRSWIFHGNSLSQVS 280 (318)
Q Consensus 225 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-----~~v~iwd~~~~~~~~~~ 280 (318)
|..+.++..+..+......-..+.+ ++++++.|+.+ ..+.+||+.++....+.
T Consensus 175 -d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~ 232 (306)
T 3ii7_A 175 -DPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVS 232 (306)
T ss_dssp -ETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECC
T ss_pred -CCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECC
Confidence 7777777666544322222222222 56677777654 46889999887766554
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.10 E-value=0.093 Score=43.59 Aligned_cols=154 Identities=11% Similarity=0.119 Sum_probs=90.6
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCc---EEEEEe-C--CCc
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQV---LLVTGS-S--DGS 158 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~---~l~s~~-~--d~~ 158 (318)
.+++...+.+-+.+||+ ++ +.++.+.. +.++.+..-|-. .-.|+ ++++.. . +++
T Consensus 41 s~ii~t~k~~gL~Vydl-~G--------------~~l~~~~~--g~~nnVD~r~~~---~l~g~~~dla~as~R~~~~n~ 100 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSL-DG--------------KMLHSYNT--GKLNNVDIRYDF---PLNGKKVDIAAASNRSEGKNT 100 (355)
T ss_dssp CEEEEEETTTEEEEEET-TS--------------CEEEEECC--SCEEEEEEEEEE---EETTEEEEEEEEEECSTTCCE
T ss_pred cEEEEEcCCCCEEEEcC-CC--------------cEEEEccC--CCcccEEEeccc---ccCCceEeEEEEeCCCCCCCe
Confidence 56676677888999999 43 34555543 456666662211 11222 233333 3 579
Q ss_pred EEEEECC--CcceeeeecccccccccceeeeeecccceeEEEE--eeccCCC-Cce-EEEEEeCCCcEEEeeecc-CCC-
Q 021036 159 VRIWDGY--IQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSL--ILPVQSP-RLM-LLAVGKGSGSFDLWKCDI-SCN- 230 (318)
Q Consensus 159 v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~~~~-~~~-~l~~~~~dg~i~vw~~~~-~~~- 230 (318)
|.+|++. +++ +..+.....++ ......++.+++ + + .+. ++++...+|.+..|++.. ..+
T Consensus 101 l~vf~iDp~~~~-l~~i~~~~~pv-------~t~~~~pyGlcly~~-----~~~g~~yafV~~k~G~~~q~~l~~~~~g~ 167 (355)
T 3amr_A 101 IEIYAIDGKNGT-LQSMTDPDHPI-------ATAINEVYGFTLYHS-----QKTGKYYAMVTGKEGEFEQYELKADKNGY 167 (355)
T ss_dssp EEEEEECTTTCC-EEECSCTTSCE-------ECCCSSCCCEEEEEC-----TTTCCEEEEEECSSSEEEEEEEEECTTSC
T ss_pred EEEEEECCCCCc-eeeccccccCc-------CCCCCCeeEEEEEec-----CCCCcEEEEEECCCCeEEEEEEEeCCCCc
Confidence 9999774 332 33331100000 000135566777 5 4 343 678888899999996632 122
Q ss_pred -eeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEec
Q 021036 231 -KFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFH 272 (318)
Q Consensus 231 -~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 272 (318)
..+.+.++.. ...+..+..++....|+.+-++.-|..++..
T Consensus 168 ~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~ 209 (355)
T 3amr_A 168 ISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAE 209 (355)
T ss_dssp EEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEECS
T ss_pred ccceEEEEecC-CCCcceEEEcCCCCeEEEecccceEEEEeCC
Confidence 3346677664 4568888999988899999998666666644
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.11 Score=43.40 Aligned_cols=147 Identities=14% Similarity=0.124 Sum_probs=79.1
Q ss_pred CCCCcEEEEEe------------CCCcEEEEECCCcc-eeeeecccccccccceeeeeecccceeEEEEeeccCCCCc--
Q 021036 144 SNPQVLLVTGS------------SDGSVRIWDGYIQE-LQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRL-- 208 (318)
Q Consensus 144 ~~~~~~l~s~~------------~d~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~-- 208 (318)
.++|..+++++ .+|.|.++|..+.. ....+......+ .........+.+..+ .++
T Consensus 58 ~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~-------~~~~f~PhGi~~~~d---~dg~~ 127 (355)
T 3sre_A 58 LPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTL-------DISSFNPHGISTFID---DDNTV 127 (355)
T ss_dssp CTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSC-------CGGGCCEEEEEEEEC---TTCCE
T ss_pred cCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCC-------CcCceeeeeeEEEEC---CCCcE
Confidence 56675555542 68999999987421 122221111000 001123445555411 133
Q ss_pred eEEEEEeC--CCcEEEeeeccCCCeeeEeeeeeccc-CceeEEEEcCCCCEEEEecC-----------------CCcEEE
Q 021036 209 MLLAVGKG--SGSFDLWKCDISCNKFDKVGSYNAHD-QVVTGLAWAFDGCCLYSCSQ-----------------DNFVRS 268 (318)
Q Consensus 209 ~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~-----------------d~~v~i 268 (318)
.++++-.. +..|.+|+++........+.++.+.. .....+.+.++|.+.++... .|.|..
T Consensus 128 ~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr 207 (355)
T 3sre_A 128 YLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY 207 (355)
T ss_dssp EEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred EEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence 34444333 56889998887766655666665432 35688999999987776541 133433
Q ss_pred EEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 269 WIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 269 wd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
+| .+....+... ....++++|+||++.|..+.
T Consensus 208 ~d--~~~~~~~~~~---------------l~~pNGia~spDg~~lYvad 239 (355)
T 3sre_A 208 YS--PNDVRVVAEG---------------FDFANGINISPDGKYVYIAE 239 (355)
T ss_dssp EC--TTCCEEEEEE---------------ESSEEEEEECTTSSEEEEEE
T ss_pred EE--CCeEEEeecC---------------CcccCcceECCCCCEEEEEe
Confidence 33 3322211111 11448999999998877653
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.067 Score=48.31 Aligned_cols=159 Identities=17% Similarity=0.060 Sum_probs=86.5
Q ss_pred EEEecCCCcEEEEEccCCccccccccccCCceeEEeeec--ccc--ccEEEEEeeeecCCCCCCCcEEEEEe------CC
Q 021036 87 LAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQ--AHN--SWITSISLAVLSSDSSNPQVLLVTGS------SD 156 (318)
Q Consensus 87 l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~--~~v~~~~~~p~~~~~~~~~~~l~s~~------~d 156 (318)
|+.++.|+.|.-+|.++|+.+ -... .+. ..+.+ .|. -.++ .++.++ .+
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~--------------W~~~~~~~~~~~~~~s---sP~----v~~g-~V~vg~~g~e~g~~ 181 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETV--------------WKVENSDIKVGSTLTI---APY----VVKD-KVIIGSSGAELGVR 181 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEE--------------EEEECCCGGGTCBCCS---CCE----EETT-EEEECCBCGGGTCC
T ss_pred EEEEcCCCEEEEEECCCCCEE--------------EeecCCCCCccceeec---CCE----EECC-EEEEEecccccCCC
Confidence 788888999999999987632 1111 111 01111 000 0134 455554 38
Q ss_pred CcEEEEECCCcceeeeecccccccccc------------------------eeeeeecccceeEEEEeeccCCCCceEEE
Q 021036 157 GSVRIWDGYIQELQKSAEAHCVPFSLL------------------------KEVVTVNTVPISVLSLILPVQSPRLMLLA 212 (318)
Q Consensus 157 ~~v~iwd~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~v~~l~~~~~~~~~~~~~l~ 212 (318)
+.|+.+|..+|+.+..+.......... ..........-..+++. +...+++
T Consensus 182 g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d-----~~~g~vy 256 (599)
T 1w6s_A 182 GYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYD-----PGTNLIY 256 (599)
T ss_dssp CEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEE-----TTTTEEE
T ss_pred CeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEe-----CCCCEEE
Confidence 999999999999887765432110000 00000000001134555 5666777
Q ss_pred EEeCCC----------------cEEEeeeccCCCeeeEeeeeec--cc--------CceeEEEEc-CCC---CEEEEecC
Q 021036 213 VGKGSG----------------SFDLWKCDISCNKFDKVGSYNA--HD--------QVVTGLAWA-FDG---CCLYSCSQ 262 (318)
Q Consensus 213 ~~~~dg----------------~i~vw~~~~~~~~~~~~~~~~~--h~--------~~v~~~~~~-~~~---~~l~s~~~ 262 (318)
.+..++ .|..+ |..+++ .+..++. |. .++. +... .+| ..++.++.
T Consensus 257 ~g~g~~~p~~~~~r~gd~~y~~sv~Al--d~~TG~--~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~ 331 (599)
T 1w6s_A 257 FGTGNPAPWNETMRPGDNKWTMTIFGR--DADTGE--AKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDR 331 (599)
T ss_dssp EECCCCSCSCGGGSCSCCTTSSEEEEE--ETTTCC--EEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECT
T ss_pred EeCCCCccccCcccCCCccccceEEEE--eCCCCc--eeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECC
Confidence 766553 55555 777777 3333332 22 1121 2222 467 46777899
Q ss_pred CCcEEEEEecCCcee
Q 021036 263 DNFVRSWIFHGNSLS 277 (318)
Q Consensus 263 d~~v~iwd~~~~~~~ 277 (318)
+|.++++|..+++..
T Consensus 332 ~G~l~~lD~~tG~~l 346 (599)
T 1w6s_A 332 NGIVYTLDRTDGALV 346 (599)
T ss_dssp TSEEEEEETTTCCEE
T ss_pred CcEEEEEECCCCCEe
Confidence 999999999887754
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.021 Score=52.69 Aligned_cols=157 Identities=13% Similarity=-0.108 Sum_probs=81.3
Q ss_pred ccCCCC-CccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEe-
Q 021036 77 QNGSSN-WFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS- 154 (318)
Q Consensus 77 ~~~~s~-~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~- 154 (318)
.++++. .++++++-...+.|.+.+..... ....+.........|++ .+.+.+|+.+.
T Consensus 457 glavD~~~g~LY~tD~~~~~I~v~d~dg~~--------------~~~l~~~~~~~P~giav-------Dp~~g~ly~td~ 515 (699)
T 1n7d_A 457 GLAVDWIHSNIYWTDSVLGTVSVADTKGVK--------------RKTLFREQGSKPRAIVV-------DPVHGFMYWTDW 515 (699)
T ss_dssp CEECCCSSSBCEECCTTTSCEEEEBSSSCC--------------EEEECCCSSCCCCCEEC-------CSSSSCCEECCC
T ss_pred eEEEEeeCCcEEEEeccCCeEEEEecCCCc--------------eEEEEeCCCCCcceEEE-------ccCCCcEEEccc
Confidence 445543 24566665667889988887532 11112222233466777 55443344333
Q ss_pred CC-CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCc-eEEEEEeCCCcEEEeeeccCCCee
Q 021036 155 SD-GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRL-MLLAVGKGSGSFDLWKCDISCNKF 232 (318)
Q Consensus 155 ~d-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~-~~l~~~~~dg~i~vw~~~~~~~~~ 232 (318)
.. +.|...++.... ...+... .....+.|+++ |++ .++++-...+.|..++++ ....
T Consensus 516 ~~~~~I~~~~~dG~~-~~~l~~~-------------~l~~PnGlavd-----~~~~~LY~aD~~~~~I~~~d~d--G~~~ 574 (699)
T 1n7d_A 516 GTPAKIKKGGLNGVD-IYSLVTE-------------NIQWPNGITLD-----LLSGRLYWVDSKLHSISSIDVN--GGNR 574 (699)
T ss_dssp SSSCCEEBCCSSSCC-CCEESCS-------------SCSSCCCEEEC-----TTTCCEEEEETTTTEEEEECSS--SSCC
T ss_pred CCCCeEEEEeCCCCC-eeEEEeC-------------CCCCccEEEEe-----ccCCEEEEEecCCCeEEEEccC--CCce
Confidence 22 677777665322 1111100 11245678998 664 455555567788888554 3222
Q ss_pred eEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCce
Q 021036 233 DKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSL 276 (318)
Q Consensus 233 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 276 (318)
+.+............|++..+ .++++....+.|..++..++..
T Consensus 575 ~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~ 617 (699)
T 1n7d_A 575 KTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSD 617 (699)
T ss_dssp EEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEE
T ss_pred EEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCc
Confidence 222221111223345666544 4555556678899999765544
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.13 Score=42.97 Aligned_cols=178 Identities=11% Similarity=0.034 Sum_probs=90.8
Q ss_pred CCCcEEEEEccCCccccccccccCCceeEEee----eccccccEEEEEeeeecCCCCCCC--cEEEEEeC--CCcEEEEE
Q 021036 92 RSGKVSLWRICVPKCYSVEDCKVPTTAVLIGL----FQAHNSWITSISLAVLSSDSSNPQ--VLLVTGSS--DGSVRIWD 163 (318)
Q Consensus 92 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~----~~~h~~~v~~~~~~p~~~~~~~~~--~~l~s~~~--d~~v~iwd 163 (318)
.+|.|.++|.++.... .+.+.. +....-....+.+.+- .++ .++++-.. +.++.+|+
T Consensus 81 ~~G~I~~~d~~~~~~~----------~~~l~~~g~~~~~~~f~PhGi~~~~d-----~dg~~~L~Vvnh~~~~s~ielf~ 145 (355)
T 3sre_A 81 KSGKILLMDLNEKEPA----------VSELEIIGNTLDISSFNPHGISTFID-----DDNTVYLLVVNHPGSSSTVEVFK 145 (355)
T ss_dssp -CCEEEEEETTSSSCC----------EEECEEECSSCCGGGCCEEEEEEEEC-----TTCCEEEEEEECSTTCCEEEEEE
T ss_pred CCCeEEEEecCCCCCc----------eEEEEccCCCCCcCceeeeeeEEEEC-----CCCcEEEEEEECCCCCCeEEEEE
Confidence 6899999998743210 112211 1112235566666211 123 34444333 56788887
Q ss_pred CCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeC---C------------CcEEEeeeccC
Q 021036 164 GYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKG---S------------GSFDLWKCDIS 228 (318)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~---d------------g~i~vw~~~~~ 228 (318)
+..+.....+-. .+........+.+.+. ++|.+.++... | ..=.+|.++..
T Consensus 146 ~d~~~~~~~~~~---------~~~g~~~~~pND~~v~-----~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~ 211 (355)
T 3sre_A 146 FQEEEKSLLHLK---------TIRHKLLPSVNDIVAV-----GPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN 211 (355)
T ss_dssp EETTTTEEEEEE---------EECCTTCSSEEEEEEE-----ETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT
T ss_pred EECCCCEEEEEe---------ccccCCCCCCceEEEe-----CCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC
Confidence 764322111100 0000112256888998 88887776541 1 22334433442
Q ss_pred CCeeeEeeeeecccCceeEEEEcCCCCEEEEe-cCCCcEEEEEecC-CceeeeecCCCCCCccccccCCCcceeeeEEEE
Q 021036 229 CNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSC-SQDNFVRSWIFHG-NSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAV 306 (318)
Q Consensus 229 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~d~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 306 (318)
+.+. +...-...+.++|+||++.|+.+ +..+.|..|++.. +.+.....-.. .+..-.+++
T Consensus 212 --~~~~---~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~-------------~g~PDGi~v 273 (355)
T 3sre_A 212 --DVRV---VAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSF-------------DTLVDNISV 273 (355)
T ss_dssp --CCEE---EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEC-------------SSEEEEEEE
T ss_pred --eEEE---eecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeC-------------CCCCceEEE
Confidence 2212 22223456889999999866554 5678999999864 33221110000 124567888
Q ss_pred cC-CCcEEEEE
Q 021036 307 SP-GNLVVAMV 316 (318)
Q Consensus 307 sp-~~~~l~~~ 316 (318)
.+ +|.+.+++
T Consensus 274 D~e~G~lwva~ 284 (355)
T 3sre_A 274 DPVTGDLWVGC 284 (355)
T ss_dssp CTTTCCEEEEE
T ss_pred eCCCCcEEEEe
Confidence 88 58766644
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.12 Score=41.87 Aligned_cols=112 Identities=18% Similarity=0.169 Sum_probs=63.0
Q ss_pred CCcEEEEEeCC-----CcEEEEECCCcc---eeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCC
Q 021036 146 PQVLLVTGSSD-----GSVRIWDGYIQE---LQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGS 217 (318)
Q Consensus 146 ~~~~l~s~~~d-----~~v~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~d 217 (318)
++.+++.|+.+ ..+.+||..+.+ -...-..... . .-..++. .++.+++.|+.+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~------------r-~~~~~~~------~~~~lyv~GG~~ 122 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVR------------R-GLAGATT------LGDMIYVSGGFD 122 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSC------------C-BSCEEEE------ETTEEEEECCBC
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCC------------c-cceeEEE------ECCEEEEEcccC
Confidence 46677777755 468889988765 2222110000 0 1112222 356788887754
Q ss_pred C-----cEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCC-----CcEEEEEecCCceeeee
Q 021036 218 G-----SFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQD-----NFVRSWIFHGNSLSQVS 280 (318)
Q Consensus 218 g-----~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-----~~v~iwd~~~~~~~~~~ 280 (318)
+ .+.+| |..+.++..+..+......-..+.+ ++++++.|+.+ ..+.+||+.+.....+.
T Consensus 123 ~~~~~~~~~~~--d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 191 (301)
T 2vpj_A 123 GSRRHTSMERY--DPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVT 191 (301)
T ss_dssp SSCBCCEEEEE--ETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEEC
T ss_pred CCcccceEEEE--cCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCC
Confidence 3 35565 7778887766554322222222222 56777777754 46889998887766553
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.11 Score=46.58 Aligned_cols=72 Identities=17% Similarity=0.094 Sum_probs=43.2
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeec--cccccEEEEEeeeecCCCCCCCcEEEEEeC------
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQ--AHNSWITSISLAVLSSDSSNPQVLLVTGSS------ 155 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~------ 155 (318)
+..++.++.|+.|..+|.++++.. -... .+... ..+.-.|. -.++ .++.++.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~--------------W~~~~~~~~~~-~~~~~~P~----v~~g-~v~vg~~~~~~~~ 174 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKIN--------------WEVEVCDPKVG-STLTQAPF----VAKD-TVLMGCSGAELGV 174 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEE--------------EEEECCCGGGT-CBCCSCCE----EETT-EEEEECBCGGGTC
T ss_pred CCEEEEEeCCCEEEEEECCCCCEE--------------EEecCCCCCcc-ceeccCCE----EECC-EEEEEecCCccCC
Confidence 467888888999999999987632 2211 11100 00111000 0133 4555554
Q ss_pred CCcEEEEECCCcceeeeecc
Q 021036 156 DGSVRIWDGYIQELQKSAEA 175 (318)
Q Consensus 156 d~~v~iwd~~~~~~~~~~~~ 175 (318)
++.|..+|..+|+.+..+..
T Consensus 175 ~g~v~a~D~~tG~~~W~~~~ 194 (571)
T 2ad6_A 175 RGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp CCEEEEEETTTCCEEEEEES
T ss_pred CCEEEEEECCCCcEEEEEcc
Confidence 79999999999998877654
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.14 Score=42.37 Aligned_cols=149 Identities=10% Similarity=0.060 Sum_probs=77.4
Q ss_pred cccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEE-EECCCcceeeeecccccccccceeeeeecccceeEEEEeeccC
Q 021036 126 AHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRI-WDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQ 204 (318)
Q Consensus 126 ~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 204 (318)
.....+..+.+ .+++.+++.+. +|.+.. +|- .++.-..+.. .....+..+.+.
T Consensus 160 ~~~~~~~~~~~-------~~~~~~~~~g~-~G~~~~S~d~-gG~tW~~~~~-------------~~~~~~~~~~~~---- 213 (327)
T 2xbg_A 160 EAIGVMRNLNR-------SPSGEYVAVSS-RGSFYSTWEP-GQTAWEPHNR-------------TTSRRLHNMGFT---- 213 (327)
T ss_dssp SCCCCEEEEEE-------CTTSCEEEEET-TSSEEEEECT-TCSSCEEEEC-------------CSSSCEEEEEEC----
T ss_pred CCCcceEEEEE-------cCCCcEEEEEC-CCcEEEEeCC-CCCceeECCC-------------CCCCccceeEEC----
Confidence 34557888999 77777776664 444433 332 1222221111 112356778887
Q ss_pred CCCceEEEEEeCCCcEEEeeeccCCCeeeEeeee-ecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCC
Q 021036 205 SPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSY-NAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPT 283 (318)
Q Consensus 205 ~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 283 (318)
+++.+++.+ .+|.+++.+.| ....+..+..- ..+...+.++.+.+++..++++. ++.| .+....+.........
T Consensus 214 -~~g~~~~~~-~~G~~~~s~~D-~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~ 288 (327)
T 2xbg_A 214 -PDGRLWMIV-NGGKIAFSDPD-NSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDV 288 (327)
T ss_dssp -TTSCEEEEE-TTTEEEEEETT-EEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGG
T ss_pred -CCCCEEEEe-CCceEEEecCC-CCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCcc
Confidence 777766544 57877765211 12222222111 01223578899998887666654 6666 3444444333221110
Q ss_pred CCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 284 NTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 284 ~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
. .....++++.|.+++++++.|
T Consensus 289 ~-----------~~~~~~~~v~~~~~~~~~~~G 310 (327)
T 2xbg_A 289 K-----------KVPSNFYKILFFSPDQGFILG 310 (327)
T ss_dssp T-----------TSSSCCCEEEEEETTEEEEEC
T ss_pred C-----------CCCCCeEEEEEECCCceEEEc
Confidence 0 011255788887777777765
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.062 Score=43.70 Aligned_cols=70 Identities=23% Similarity=0.266 Sum_probs=43.7
Q ss_pred CceEEEEEeCCC-----cEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCC-----cEEEEEecCCce
Q 021036 207 RLMLLAVGKGSG-----SFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDN-----FVRSWIFHGNSL 276 (318)
Q Consensus 207 ~~~~l~~~~~dg-----~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~-----~v~iwd~~~~~~ 276 (318)
++.+++.|+.++ .+.+| |..+.++..+..+.........+. .++++++.|+.++ .+.+||+.+...
T Consensus 204 ~~~iyv~GG~~~~~~~~~~~~y--d~~~~~W~~~~~~~~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 204 NNLLYAVGGHDGPLVRKSVEVY--DPTTNAWRQVADMNMCRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTDKW 279 (302)
T ss_dssp TTEEEEECCBSSSSBCCCEEEE--ETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred CCEEEEECCCCCCcccceEEEE--eCCCCCEeeCCCCCCccccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence 578888887643 56676 777778776654432221112222 2567777777653 489999988776
Q ss_pred eeee
Q 021036 277 SQVS 280 (318)
Q Consensus 277 ~~~~ 280 (318)
..+.
T Consensus 280 ~~~~ 283 (302)
T 2xn4_A 280 TVVS 283 (302)
T ss_dssp EECS
T ss_pred EECC
Confidence 6553
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.87 E-value=0.11 Score=42.52 Aligned_cols=70 Identities=17% Similarity=0.158 Sum_probs=43.3
Q ss_pred CceEEEEEeCC-----CcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCC-----CcEEEEEecCCce
Q 021036 207 RLMLLAVGKGS-----GSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQD-----NFVRSWIFHGNSL 276 (318)
Q Consensus 207 ~~~~l~~~~~d-----g~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-----~~v~iwd~~~~~~ 276 (318)
++.+++.|+.+ ..+.+| |..+.++..+..+.........+.+ ++++++.|+.+ ..+.+||+.+...
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~y--d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 243 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECY--YPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETW 243 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEE--ETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred CCEEEEEeCCCCCCcCceEEEE--eCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcE
Confidence 56777777754 346676 6777777665544322222222333 56677777765 5689999988776
Q ss_pred eeee
Q 021036 277 SQVS 280 (318)
Q Consensus 277 ~~~~ 280 (318)
..+.
T Consensus 244 ~~~~ 247 (308)
T 1zgk_A 244 TFVA 247 (308)
T ss_dssp EECC
T ss_pred EECC
Confidence 6554
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.083 Score=44.12 Aligned_cols=74 Identities=9% Similarity=0.081 Sum_probs=37.6
Q ss_pred CceEEEEEeC------CCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCC-----------------
Q 021036 207 RLMLLAVGKG------SGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQD----------------- 263 (318)
Q Consensus 207 ~~~~l~~~~~------dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d----------------- 263 (318)
++.+++.|+. ...+..|+++..+.++..+..+..........+...++++++.|+.+
T Consensus 200 ~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~ 279 (357)
T 2uvk_A 200 GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHE 279 (357)
T ss_dssp TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTT
T ss_pred CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccc
Confidence 5677777763 33566776555777776665542221111111222356677777632
Q ss_pred -----CcEEEEEecCCceeeee
Q 021036 264 -----NFVRSWIFHGNSLSQVS 280 (318)
Q Consensus 264 -----~~v~iwd~~~~~~~~~~ 280 (318)
..+.+||+.+.....+.
T Consensus 280 ~~~~~~~~~~yd~~~~~W~~~~ 301 (357)
T 2uvk_A 280 GLKKSYSTDIHLWHNGKWDKSG 301 (357)
T ss_dssp TCCCEECCEEEECC---CEEEE
T ss_pred cccceeeEEEEecCCCceeeCC
Confidence 25788998877666554
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.12 Score=45.32 Aligned_cols=117 Identities=10% Similarity=0.057 Sum_probs=67.4
Q ss_pred cEEEEEeeeecCCCCC--CCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEE-------e
Q 021036 130 WITSISLAVLSSDSSN--PQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSL-------I 200 (318)
Q Consensus 130 ~v~~~~~~p~~~~~~~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-------~ 200 (318)
....|+| .| +++++++-...+.|++.|+..+........... .......++| +
T Consensus 140 ~p~~la~-------dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~-----------~~~~p~~ia~~~~~~~~d 201 (496)
T 3kya_A 140 DNGRLAF-------DPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTI-----------PTNRIRSIAFNKKIEGYA 201 (496)
T ss_dssp SEEEEEE-------ETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTS-----------SCSBEEEEEECCCBTTTB
T ss_pred CCCEEEE-------ccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCcc-----------ccCCCcEEEEeecccccC
Confidence 3567888 55 244455444456788889887655443332111 1124678899 8
Q ss_pred eccCCCCceEEEEEeCCC-c------EEEeeeccCC-CeeeE---eeeeecccCceeEEEEcCC-CCEEEEecCCCcEEE
Q 021036 201 LPVQSPRLMLLAVGKGSG-S------FDLWKCDISC-NKFDK---VGSYNAHDQVVTGLAWAFD-GCCLYSCSQDNFVRS 268 (318)
Q Consensus 201 ~~~~~~~~~~l~~~~~dg-~------i~vw~~~~~~-~~~~~---~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~v~i 268 (318)
++++.|+++...+ . |.++ +... +.+.. ...+... .....++++|+ +.++++-..++.|..
T Consensus 202 -----~~G~~lyvad~~~~~~~~~~~V~~i--~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r 273 (496)
T 3kya_A 202 -----DEAEYMIVAIDYDGKGDESPSVYII--KRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFR 273 (496)
T ss_dssp -----CTTCEEEEEECCCTTGGGEEEEEEE--ECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEE
T ss_pred -----CCCCEEEEEeCCCCCcccCceEEEE--ecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEE
Confidence 8888666666544 2 4454 3222 23210 0112222 23457888995 556667778888999
Q ss_pred EEec
Q 021036 269 WIFH 272 (318)
Q Consensus 269 wd~~ 272 (318)
+|+.
T Consensus 274 ~d~~ 277 (496)
T 3kya_A 274 LDLV 277 (496)
T ss_dssp ECHH
T ss_pred Eecc
Confidence 9997
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.29 Score=42.91 Aligned_cols=168 Identities=10% Similarity=-0.054 Sum_probs=85.7
Q ss_pred EEEEeeeecCCCCC-CCcEEEEEeCCCcEEEEECC-------Ccceeeeecccccccccceeee-eecccceeEEEEeec
Q 021036 132 TSISLAVLSSDSSN-PQVLLVTGSSDGSVRIWDGY-------IQELQKSAEAHCVPFSLLKEVV-TVNTVPISVLSLILP 202 (318)
Q Consensus 132 ~~~~~~p~~~~~~~-~~~~l~s~~~d~~v~iwd~~-------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~ 202 (318)
..++. .+ ++.++++-..++.|..+|+. ++..-......... ....+. .......+.|+++
T Consensus 250 ~giav-------dp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g--~~~~l~~~~~~~~p~~ia~~-- 318 (496)
T 3kya_A 250 NGATI-------HPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN--TFKQLFTIADPSWEFQIFIH-- 318 (496)
T ss_dssp CCEEE-------CTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT--TEEEEEECSSSSCCEEEEEC--
T ss_pred eEEEE-------cCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc--ccceeEecCCCCCceEEEEc--
Confidence 46677 55 56666666678889999987 44320000000000 000000 1112345789999
Q ss_pred cCCCCceEEEEE-eCCCcEEEeeeccCCCeeeEeeeeecc---c------------Ccee-EEEEc-------CCCCEEE
Q 021036 203 VQSPRLMLLAVG-KGSGSFDLWKCDISCNKFDKVGSYNAH---D------------QVVT-GLAWA-------FDGCCLY 258 (318)
Q Consensus 203 ~~~~~~~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~h---~------------~~v~-~~~~~-------~~~~~l~ 258 (318)
|+|+.|+.+ .....|+.++.+...+.+.....+.+. . .... .+... ++|.+++
T Consensus 319 ---p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyV 395 (496)
T 3kya_A 319 ---PTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYF 395 (496)
T ss_dssp ---TTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEE
T ss_pred ---CCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEE
Confidence 999854444 567788887666655432111122111 0 1233 34444 4566666
Q ss_pred EecCCCcEEEEEecCCceeeeecCCCC---------CCccccccCCCcceeeeEEEEcCC-CcEEE
Q 021036 259 SCSQDNFVRSWIFHGNSLSQVSIPTNT---------PGLQSCTDLPDAFVSCLGMAVSPG-NLVVA 314 (318)
Q Consensus 259 s~~~d~~v~iwd~~~~~~~~~~~~~~~---------~~~~~~~~~~~h~~~v~~v~~sp~-~~~l~ 314 (318)
+-..+..|+.++ ..+.+.++...... ....+............+|+++++ |.+.+
T Consensus 396 aD~~N~rIr~i~-~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyV 460 (496)
T 3kya_A 396 VDRLNFCVRKVT-PEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYV 460 (496)
T ss_dssp EEGGGTEEEEEC-TTCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEE
T ss_pred EECCCCEEEEEe-CCCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEE
Confidence 666778888888 44556555543211 000010011123345689999997 65444
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=96.62 E-value=0.025 Score=50.94 Aligned_cols=80 Identities=23% Similarity=0.320 Sum_probs=48.9
Q ss_pred CCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEe
Q 021036 156 DGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKV 235 (318)
Q Consensus 156 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 235 (318)
+|.|..||+.+++.+....... ++..-... ..+.+++.++.||.++.| |.++++ .+
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~---------------~~~~g~~~-----tagglvf~g~~dg~l~A~--D~~tG~--~l 520 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHL---------------PLWAGVLA-----TAGNLVFTGTGDGYFKAF--DAKSGK--EL 520 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESS---------------CCCSCCEE-----ETTTEEEEECTTSEEEEE--ETTTCC--EE
T ss_pred cceEEEEECCCCCEEEEecCCC---------------CCcccceE-----eCCCEEEEECCCCcEEEE--ECCCCC--EE
Confidence 5789999999998877654321 11111111 235667779999999999 777887 56
Q ss_pred eeeecccCc-eeEEEEcCCCC-EEEE
Q 021036 236 GSYNAHDQV-VTGLAWAFDGC-CLYS 259 (318)
Q Consensus 236 ~~~~~h~~~-v~~~~~~~~~~-~l~s 259 (318)
.+++..... ..-+.|..+|+ |+++
T Consensus 521 W~~~~~~g~~a~P~~y~~~G~qYv~~ 546 (582)
T 1flg_A 521 WKFQTGSGIVSPPITWEQDGEQYLGV 546 (582)
T ss_dssp EEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred EEecCCCCcccCceEEEECCEEEEEE
Confidence 565543221 12256667776 4443
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.24 Score=40.18 Aligned_cols=152 Identities=9% Similarity=-0.021 Sum_probs=81.3
Q ss_pred cEEEEecCC--CcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCC----Cc
Q 021036 85 SILAVGGRS--GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSD----GS 158 (318)
Q Consensus 85 ~~l~~g~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d----~~ 158 (318)
.+++.|+.+ ..+.+||..+++.. .+..+......-..+.+ ++.+++.|+.+ ..
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~------------~~~~~p~~r~~~~~~~~---------~~~lyv~GG~~~~~~~~ 71 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWT------------DIRCPFEKRRDAACVFW---------DNVVYILGGSQLFPIKR 71 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEE------------ECCCCSCCCBSCEEEEE---------TTEEEEECCBSSSBCCE
T ss_pred eEEEEeCCCCCceEEEecCCCCCEe------------cCCCCCcccceeEEEEE---------CCEEEEEeCCCCCCcce
Confidence 466667653 56888888876532 22222211112222233 55677777755 56
Q ss_pred EEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCC------CcEEEeeeccCCCee
Q 021036 159 VRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGS------GSFDLWKCDISCNKF 232 (318)
Q Consensus 159 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~d------g~i~vw~~~~~~~~~ 232 (318)
+.+||..+.+-...-..... . .-..++. -++.+++.|+.+ ..+.+| |..+.++
T Consensus 72 ~~~~d~~~~~W~~~~~~p~~------------r-~~~~~~~------~~~~iyv~GG~~~~~~~~~~~~~~--d~~~~~W 130 (306)
T 3ii7_A 72 MDCYNVVKDSWYSKLGPPTP------------R-DSLAACA------AEGKIYTSGGSEVGNSALYLFECY--DTRTESW 130 (306)
T ss_dssp EEEEETTTTEEEEEECCSSC------------C-BSCEEEE------ETTEEEEECCBBTTBSCCCCEEEE--ETTTTEE
T ss_pred EEEEeCCCCeEEECCCCCcc------------c-cceeEEE------ECCEEEEECCCCCCCcEeeeEEEE--eCCCCce
Confidence 88888877643322111100 0 1112222 356778887755 346666 6777777
Q ss_pred eEeeeeecccCceeEEEEcCCCCEEEEecC---------CCcEEEEEecCCceeeee
Q 021036 233 DKVGSYNAHDQVVTGLAWAFDGCCLYSCSQ---------DNFVRSWIFHGNSLSQVS 280 (318)
Q Consensus 233 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~---------d~~v~iwd~~~~~~~~~~ 280 (318)
..+..+.........+. -++++++.|+. -..+.+||+.+.....+.
T Consensus 131 ~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~ 185 (306)
T 3ii7_A 131 HTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELC 185 (306)
T ss_dssp EEECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEEC
T ss_pred EeCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECC
Confidence 66654432222222222 25666666653 345889999887766554
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=96.52 E-value=0.26 Score=40.51 Aligned_cols=147 Identities=7% Similarity=-0.147 Sum_probs=82.6
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEe--CCCcEEE
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS--SDGSVRI 161 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~--~d~~v~i 161 (318)
++++++-...+.|.+++.+.... +. .+.........+++ .+.+..|+.+. ..+.|..
T Consensus 91 g~ly~~d~~~~~I~~~~~dG~~~------------~~--l~~~~~~~P~giav-------dp~~g~ly~td~~~~~~I~r 149 (318)
T 3sov_A 91 EKLYWTDSETNRIEVSNLDGSLR------------KV--LFWQELDQPRAIAL-------DPSSGFMYWTDWGEVPKIER 149 (318)
T ss_dssp TEEEEEETTTTEEEEEETTSCSC------------EE--EECSSCSSEEEEEE-------EGGGTEEEEEECSSSCEEEE
T ss_pred CeEEEEECCCCEEEEEECCCCcE------------EE--EEeCCCCCccEEEE-------eCCCCEEEEEecCCCCEEEE
Confidence 46666666778899998875321 11 12223345678888 55444444444 2577888
Q ss_pred EECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCc-eEEEEEeCCCcEEEeeeccCCCeeeEeeeeec
Q 021036 162 WDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRL-MLLAVGKGSGSFDLWKCDISCNKFDKVGSYNA 240 (318)
Q Consensus 162 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 240 (318)
.++.... ...+... .-...+.|+++ +++ .++++-...+.|..++++-...+ .+. .+
T Consensus 150 ~~~dG~~-~~~~~~~-------------~l~~Pnglavd-----~~~~~lY~aD~~~~~I~~~d~dG~~~~--~~~--~~ 206 (318)
T 3sov_A 150 AGMDGSS-RFIIINS-------------EIYWPNGLTLD-----YEEQKLYWADAKLNFIHKSNLDGTNRQ--AVV--KG 206 (318)
T ss_dssp EETTSCS-CEEEECS-------------SCSCEEEEEEE-----TTTTEEEEEETTTTEEEEEETTSCSCE--EEE--CS
T ss_pred EEcCCCC-eEEEEEC-------------CCCCccEEEEe-----ccCCEEEEEECCCCEEEEEcCCCCceE--EEe--cC
Confidence 8776432 2221100 01245789999 754 45555556778888865432222 222 22
Q ss_pred ccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCc
Q 021036 241 HDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNS 275 (318)
Q Consensus 241 h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 275 (318)
.......+++.. +..+.+-...+.|..++..++.
T Consensus 207 ~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 207 SLPHPFALTLFE-DILYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp CCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred CCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCC
Confidence 234456777753 3455566667889999986554
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.21 Score=41.77 Aligned_cols=113 Identities=10% Similarity=0.040 Sum_probs=56.4
Q ss_pred ccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCC-
Q 021036 129 SWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPR- 207 (318)
Q Consensus 129 ~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~- 207 (318)
..-+.|+| .++|+.|+.+...|.|++++.. ++....+.... .+..........|+++ |+
T Consensus 18 ~~P~~i~~-------~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~-------~v~~~g~~g~~gia~~-----pdf 77 (353)
T 2g8s_A 18 DHPWALAF-------LPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVP-------DVWAHGQGGLLDVVLA-----PDF 77 (353)
T ss_dssp SSEEEEEE-------CSTTCCEEEEETTTEEEEEETT-TEECCCCBSCC-------CCCCSTTCSEEEEEEC-----TTH
T ss_pred CCcEEEEE-------cCCCCEEEEEeCCceEEEEeCC-CceeeEecCCc-------ccccCCCCCceeEEEC-----CCC
Confidence 34588999 8999834445567999999853 32211111000 0011122356789998 74
Q ss_pred ---ceEEEEEeC-------CCcEEEeeeccCCCeee---Eee-eee---cccCceeEEEEcCCCCEEEEec
Q 021036 208 ---LMLLAVGKG-------SGSFDLWKCDISCNKFD---KVG-SYN---AHDQVVTGLAWAFDGCCLYSCS 261 (318)
Q Consensus 208 ---~~~l~~~~~-------dg~i~vw~~~~~~~~~~---~~~-~~~---~h~~~v~~~~~~~~~~~l~s~~ 261 (318)
+.+.++-.. ...|..|+++....... .+. .+. ........++|.|+|.++++.+
T Consensus 78 ~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 148 (353)
T 2g8s_A 78 AQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALG 148 (353)
T ss_dssp HHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEEC
T ss_pred CCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEEC
Confidence 444444332 22455554432222211 111 111 1111235799999997555543
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=96.46 E-value=0.35 Score=47.23 Aligned_cols=146 Identities=13% Similarity=0.097 Sum_probs=90.8
Q ss_pred ccEEEEec----------CCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEE
Q 021036 84 FSILAVGG----------RSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTG 153 (318)
Q Consensus 84 ~~~l~~g~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~ 153 (318)
..+|++|+ ..|.|.++++..++ .+.+... ...++|++++- -+|++++ |
T Consensus 844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~k------------L~lv~~~-~v~g~v~al~~--------~~g~Lla-~ 901 (1158)
T 3ei3_A 844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGK------------LQTVAEK-EVKGAVYSMVE--------FNGKLLA-S 901 (1158)
T ss_dssp CCEEEEEEEECCTTCSSCCCEEEEEEEEETTE------------EEEEEEE-EESSCEEEEEE--------ETTEEEE-E
T ss_pred CEEEEEEeeecCCCCCCCCceEEEEEEEECCE------------EEEEEEE-EcCCcCEEEee--------eCCEEEE-E
Confidence 46788775 45789999987432 2333332 23678898875 2454444 3
Q ss_pred eCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeee
Q 021036 154 SSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFD 233 (318)
Q Consensus 154 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 233 (318)
...+|++|++...+.+. ... .....+..+... ..++++++|+.-..|.++.++....+..
T Consensus 902 -ig~~l~vy~l~~~~~L~-~~~-------------~~~~~i~~~~l~-----~~~~~I~vgD~~~Sv~~~~y~~~~~~L~ 961 (1158)
T 3ei3_A 902 -INSTVRLYEWTTEKELR-TEC-------------NHYNNIMALYLK-----TKGDFILVGDLMRSVLLLAYKPMEGNFE 961 (1158)
T ss_dssp -ETTEEEEEEECTTSCEE-EEE-------------EECCCSCEEEEE-----EETTEEEEEESSBCEEEEEEETTTTEEE
T ss_pred -cCCEEEEEECCCCceEE-EEe-------------eccccEEEEEEe-----ccCCEEEEEEhhheEEEEEEEcCCCeEE
Confidence 34799999998655333 110 000112223332 2367899999888888887676666644
Q ss_pred EeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecC
Q 021036 234 KVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 234 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 273 (318)
.+.. ..+...++++.+-.++ .++.+..+|.+.+.....
T Consensus 962 ~~a~-D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 962 EIAR-DFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp EEEE-CCSCBCEEEEEEEETT-EEEEEETTSEEEEEEECT
T ss_pred EEEe-ecccccEEEEEEEccC-cEEEEcCCCcEEEEecCC
Confidence 4432 2245578888876554 677788999999998754
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.42 E-value=0.21 Score=40.71 Aligned_cols=112 Identities=13% Similarity=0.118 Sum_probs=62.3
Q ss_pred CCcEEEEEeCC-----CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCC---
Q 021036 146 PQVLLVTGSSD-----GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGS--- 217 (318)
Q Consensus 146 ~~~~l~s~~~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~d--- 217 (318)
++.+++.|+.+ ..+.+||+.+.+-...-.... .. .-..++. -++.+++.|+.+
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~------------~r-~~~~~~~------~~~~iyv~GG~~~~~ 228 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNT------------IR-SGAGVCV------LHNCIYAAGGYDGQD 228 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSS------------CC-BSCEEEE------ETTEEEEECCBCSSS
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCC------------cc-ccceEEE------ECCEEEEEeCCCCCC
Confidence 45677777654 458888887654322111000 00 1112223 256788888754
Q ss_pred --CcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCC-----CcEEEEEecCCceeeee
Q 021036 218 --GSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQD-----NFVRSWIFHGNSLSQVS 280 (318)
Q Consensus 218 --g~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-----~~v~iwd~~~~~~~~~~ 280 (318)
..+.+| |..+.++..+..+.........+.+ ++++++.|+.+ ..+.+||+.+.....+.
T Consensus 229 ~~~~v~~y--d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 294 (308)
T 1zgk_A 229 QLNSVERY--DVETETWTFVAPMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVT 294 (308)
T ss_dssp BCCCEEEE--ETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEE
T ss_pred ccceEEEE--eCCCCcEEECCCCCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCEEeecC
Confidence 446777 6777787666544322222222222 56777777754 45788998887766553
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.45 Score=41.34 Aligned_cols=115 Identities=9% Similarity=0.043 Sum_probs=60.9
Q ss_pred ccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeee-ecccceeEEEEeeccCCC-
Q 021036 129 SWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVT-VNTVPISVLSLILPVQSP- 206 (318)
Q Consensus 129 ~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~- 206 (318)
..-+.|+| .++|+++++-...+.|++++...++.......... ... .....+..|+++ |
T Consensus 27 ~~P~~~a~-------~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~-------~~~~~g~~Gllgia~~-----Pd 87 (454)
T 1cru_A 27 NKPHALLW-------GPDNQIWLTERATGKILRVNPESGSVKTVFQVPEI-------VNDADGQNGLLGFAFH-----PD 87 (454)
T ss_dssp SSEEEEEE-------CTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTC-------CCCTTSSCSEEEEEEC-----TT
T ss_pred CCceEEEE-------cCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCcc-------ccccCCCCceeEEEEC-----CC
Confidence 35579999 89998777765445788887654543221111000 000 013456789998 6
Q ss_pred ---CceEEEEEeC------------CCcEEEeeeccCCCee---eEeee-eec-ccCceeEEEEcCCCCEEEEecC
Q 021036 207 ---RLMLLAVGKG------------SGSFDLWKCDISCNKF---DKVGS-YNA-HDQVVTGLAWAFDGCCLYSCSQ 262 (318)
Q Consensus 207 ---~~~~l~~~~~------------dg~i~vw~~~~~~~~~---~~~~~-~~~-h~~~v~~~~~~~~~~~l~s~~~ 262 (318)
++.+.++-+. ...|.-|+++...... +.+.. +.. .......|+|.|+|.+.++.+.
T Consensus 88 f~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 88 FKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp TTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred cCcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 4555444432 2345555443222221 12221 211 1224578999999986666443
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.59 Score=42.47 Aligned_cols=168 Identities=8% Similarity=-0.059 Sum_probs=96.0
Q ss_pred CCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCC-CCcEEEEEeCCCcEEEEECCCccee
Q 021036 92 RSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSN-PQVLLVTGSSDGSVRIWDGYIQELQ 170 (318)
Q Consensus 92 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~ 170 (318)
..+.|+..++++.+. .....+. .-..+..|+| .+ ++.++++-..++.|..+++......
T Consensus 13 ~~~~I~~i~l~~~~~------------~~~~~~~-~~~~~~~l~~-------d~~~~~lywtD~~~~~I~r~~~~g~~~~ 72 (628)
T 4a0p_A 13 RRADIRRISLETNNN------------NVAIPLT-GVKEASALDF-------DVTDNRIYWTDISLKTISRAFMNGSALE 72 (628)
T ss_dssp ETTEEEEEESSCTTC------------EEECCCC-SCSCEEEEEE-------ETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred eCCcEEEEECCCCCc------------ceEEEcC-CCCceEEEEE-------ECCCCEEEEEECCCCeEEEEECCCCCcE
Confidence 456799999986431 1111122 2345788999 54 4555556666789998888754332
Q ss_pred eeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEE
Q 021036 171 KSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAW 250 (318)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~ 250 (318)
..+... ......|++++ ..++++++-...+.|.+.+++-...+ .+ +...-.....+++
T Consensus 73 ~v~~~g--------------~~~P~GlAvD~----~~~~LY~tD~~~~~I~v~~~dG~~~~--~l--~~~~l~~P~~iav 130 (628)
T 4a0p_A 73 HVVEFG--------------LDYPEGMAVDW----LGKNLYWADTGTNRIEVSKLDGQHRQ--VL--VWKDLDSPRALAL 130 (628)
T ss_dssp EEECSS--------------CSCCCEEEEET----TTTEEEEEETTTTEEEEEETTSTTCE--EE--ECSSCCCEEEEEE
T ss_pred EEEeCC--------------CCCcceEEEEe----CCCEEEEEECCCCEEEEEecCCCcEE--EE--EeCCCCCcccEEE
Confidence 222111 11456788871 34556666666788888854432221 22 1123345689999
Q ss_pred cCCCCEEEEec--CCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 251 AFDGCCLYSCS--QDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 251 ~~~~~~l~s~~--~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
+|...+|+... ..+.|...++.+.....+...- ....++++++++..|..+
T Consensus 131 dp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~---------------~~P~GlalD~~~~~LY~a 183 (628)
T 4a0p_A 131 DPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNV---------------GRANGLTIDYAKRRLYWT 183 (628)
T ss_dssp ETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSC---------------SSEEEEEEETTTTEEEEE
T ss_pred ccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCC---------------CCcceEEEccccCEEEEE
Confidence 99654554443 3567888887765444332111 145788888876665544
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=96.33 E-value=0.43 Score=40.85 Aligned_cols=229 Identities=10% Similarity=0.085 Sum_probs=124.6
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceecchh------c---cccccccceeeeeccccc------CCCC----ccccccc
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITADQY------A---SRSAMLHSLAVAWSPVLR------LSSK----KYPVPQN 78 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~------~---~~~~~~~~~~~~w~p~~~------~~~~----~~~v~~~ 78 (318)
..+++--...++.|+|+++...+........ . .-+.+.......|+-.+. +.+| ..-|...
T Consensus 77 ~~iiALrag~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY 156 (494)
T 1bpo_A 77 SKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINY 156 (494)
T ss_dssp SSCEEEEETTEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEE
T ss_pred CcEEEEecCCeEEEEchHHhhhhcceecCCCceEEEecCCCeEEEEcCCeeEEecccCCCCchhheecchhcccceEEEE
Confidence 3455555588999999999777665543210 0 011112233567765431 1122 1235555
Q ss_pred CCCCCccEEEEec-------CCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEE
Q 021036 79 GSSNWFSILAVGG-------RSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLV 151 (318)
Q Consensus 79 ~~s~~~~~l~~g~-------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~ 151 (318)
..++++++++..+ ..|.+.+|+.+.+ .-+.+.+|.+....+.. +.+.....+|+
T Consensus 157 ~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~---------------~sQ~ieGhaa~F~~~~~----~g~~~~~~lf~ 217 (494)
T 1bpo_A 157 RTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK---------------VSQPIEGHAASFAQFKM----EGNAEESTLFC 217 (494)
T ss_dssp EECTTSSEEEEEEEEEETTEEEEEEEEEESTTC---------------CEEEECCSEEEEEEEEC----TTCSSEEEEEE
T ss_pred EECCCCCeEEEEeecccCCcccceEEEeecccc---------------ccchheeeeeeeEEEec----CCCCCCceEEE
Confidence 6677877776432 3567888988853 33567788766555544 00111123455
Q ss_pred EEeCC---CcEEEEECCCc-ceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeecc
Q 021036 152 TGSSD---GSVRIWDGYIQ-ELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDI 227 (318)
Q Consensus 152 s~~~d---~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 227 (318)
-+... +.+.|.++... .....+.... ..+........+.|| ++.++ +.-..++.-..-|.|++| |+
T Consensus 218 fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~--vdv~fppe~~~DFPv-amqvs-----~kygviyviTK~G~i~ly--Dl 287 (494)
T 1bpo_A 218 FAVRGQAGGKLHIIEVGTPPTGNQPFPKKA--VDVFFPPEAQNDFPV-AMQIS-----EKHDVVFLITKYGYIHLY--DL 287 (494)
T ss_dssp EEECSTTCCEEEEEECSCCCTTCCCCCCEE--EECCCCTTSTTCCEE-EEEEE-----TTTTEEEEEETTSEEEEE--ET
T ss_pred EEEecCCCcEEEEEEcCCCccCCCCcccee--eeeeCCcccccCcee-EEEec-----ccCCEEEEEecCceEEEE--ec
Confidence 45443 68888888543 1111111000 000000011223344 67777 677788888899999999 67
Q ss_pred CCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCcee
Q 021036 228 SCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLS 277 (318)
Q Consensus 228 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 277 (318)
.++. .+..-+-....|..-+-+....=++.....|.|.--.+....+.
T Consensus 288 eTgt--~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~iv 335 (494)
T 1bpo_A 288 ETGT--CIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (494)
T ss_dssp TTCC--EEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTHH
T ss_pred ccce--eeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccccch
Confidence 7877 34333334455655555554444555667888777777665543
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.32 E-value=0.43 Score=40.71 Aligned_cols=145 Identities=9% Similarity=0.046 Sum_probs=81.7
Q ss_pred CCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeee
Q 021036 146 PQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKC 225 (318)
Q Consensus 146 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~ 225 (318)
+|..++.+- ++.||.-++..+...+.+.... ......+..+..+ |+|++||..+ +..|.|-.+
T Consensus 31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~----------~i~f~~i~qlvlS-----psG~lLAl~g-~~~V~Vv~L 93 (452)
T 3pbp_A 31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSR----------HLVLDDTFHVISS-----TSGDLLCLFN-DNEIFVMEV 93 (452)
T ss_dssp TTTEEEEEE-TTEEEEEETTTCSSCEEEECTT----------TCCCCTTCEEEEC-----TTSSEEEEEC-SSEEEEEEC
T ss_pred CCCEEEEEE-CCEEEEEECCCCCcceEEecCc----------ccccCceeEEEEC-----CCCCEEEEec-CCeEEEEEe
Confidence 333344332 4677777776443333333221 0012256778898 9999999987 557777754
Q ss_pred ccCCCee--------eEeeeeec------ccCceeEEEEcCC---CCEEEEecCCCcEEEEEecCCceeeeecCCCCCCc
Q 021036 226 DISCNKF--------DKVGSYNA------HDQVVTGLAWAFD---GCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGL 288 (318)
Q Consensus 226 ~~~~~~~--------~~~~~~~~------h~~~v~~~~~~~~---~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~ 288 (318)
.-..... .....+.- ...+|..+.|+|- +..|++-..|++|++||+...............
T Consensus 94 P~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~-- 171 (452)
T 3pbp_A 94 PWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNN-- 171 (452)
T ss_dssp CTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCS--
T ss_pred cCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhcccc--
Confidence 4111000 01122221 2467999999995 558999999999999999862211111111111
Q ss_pred cccccCCCcceeeeEEEEcCCCc
Q 021036 289 QSCTDLPDAFVSCLGMAVSPGNL 311 (318)
Q Consensus 289 ~~~~~~~~h~~~v~~v~~sp~~~ 311 (318)
...+......|.+++|.+++-
T Consensus 172 --~fg~d~~~~ev~S~~Fg~~~l 192 (452)
T 3pbp_A 172 --SFGLDARVNDITDLEFSKDGL 192 (452)
T ss_dssp --EEESCSSCCCEEEEEECTTSS
T ss_pred --ccCCCcccceEEEEEEcCCCc
Confidence 011122335788999998764
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.2 Score=40.93 Aligned_cols=111 Identities=10% Similarity=0.108 Sum_probs=61.1
Q ss_pred CCcEEEEEeC-C-----CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCc
Q 021036 146 PQVLLVTGSS-D-----GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGS 219 (318)
Q Consensus 146 ~~~~l~s~~~-d-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~ 219 (318)
++++++.|+. + ..+.+||..+.+-...-..... . .-..++. -++++++.|+.++.
T Consensus 148 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~------------r-~~~~~~~------~~~~iyv~GG~~~~ 208 (315)
T 4asc_A 148 MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTA------------R-SLFGATV------HDGRIIVAAGVTDT 208 (315)
T ss_dssp TTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSC------------C-BSCEEEE------ETTEEEEEEEECSS
T ss_pred CCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCc------------h-hceEEEE------ECCEEEEEeccCCC
Confidence 4567777775 2 3688888876543221110000 0 1112223 35678888876543
Q ss_pred -----EEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCC--------------CcEEEEEecCCceeee
Q 021036 220 -----FDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQD--------------NFVRSWIFHGNSLSQV 279 (318)
Q Consensus 220 -----i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d--------------~~v~iwd~~~~~~~~~ 279 (318)
+.+| |..+.++..+..+.........+.+ ++++++.|+.+ ..+.+||+.+.+...+
T Consensus 209 ~~~~~~~~y--d~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 209 GLTSSAEVY--SITDNKWAPFEAFPQERSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp SEEEEEEEE--ETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred CccceEEEE--ECCCCeEEECCCCCCcccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 5555 7778888776544322222222222 56677777653 2477888888777665
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.4 Score=39.20 Aligned_cols=70 Identities=7% Similarity=0.116 Sum_probs=40.9
Q ss_pred CceEEEEEeC------CCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCC-----CcEEEEEecCCc
Q 021036 207 RLMLLAVGKG------SGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQD-----NFVRSWIFHGNS 275 (318)
Q Consensus 207 ~~~~l~~~~~------dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-----~~v~iwd~~~~~ 275 (318)
++.+++.|+. -..+.+| |..+.++..+..+.........+.+ ++++++.|+.+ ..+.+||+.+..
T Consensus 158 ~~~iyv~GG~~~~~~~~~~~~~y--d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 158 NGMIYCLGGKTDDKKCTNRVFIY--NPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp TTEEEEECCEESSSCBCCCEEEE--ETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred CCEEEEEcCCCCCCCccceEEEE--cCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 5677777764 2346666 7778777666544322222222222 56677777643 357788888776
Q ss_pred eeeee
Q 021036 276 LSQVS 280 (318)
Q Consensus 276 ~~~~~ 280 (318)
...+.
T Consensus 234 W~~~~ 238 (318)
T 2woz_A 234 WEVMT 238 (318)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 66554
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.41 Score=39.07 Aligned_cols=70 Identities=9% Similarity=0.169 Sum_probs=42.8
Q ss_pred CceEEEEEeC-C-----CcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCC-----cEEEEEecCCc
Q 021036 207 RLMLLAVGKG-S-----GSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDN-----FVRSWIFHGNS 275 (318)
Q Consensus 207 ~~~~l~~~~~-d-----g~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~-----~v~iwd~~~~~ 275 (318)
++++++.|+. + ..+.+| |..+.++..+..+.........+.+ ++++++.|+.++ .+.+||+.+..
T Consensus 148 ~~~iyv~GG~~~~~~~~~~~~~y--d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 148 MDLVYVIGGKGSDRKCLNKMCVY--DPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp TTEEEEECCBCTTSCBCCCEEEE--ETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred CCEEEEEeCCCCCCcccceEEEE--eCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCe
Confidence 5677778775 2 346676 6777777666544322222222222 567777777654 58889988877
Q ss_pred eeeee
Q 021036 276 LSQVS 280 (318)
Q Consensus 276 ~~~~~ 280 (318)
...+.
T Consensus 224 W~~~~ 228 (315)
T 4asc_A 224 WAPFE 228 (315)
T ss_dssp EEEEC
T ss_pred EEECC
Confidence 66654
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.51 Score=39.40 Aligned_cols=107 Identities=15% Similarity=0.077 Sum_probs=57.2
Q ss_pred ccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCC-
Q 021036 129 SWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPR- 207 (318)
Q Consensus 129 ~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~- 207 (318)
..-..++| .++|+++++ ..++.|++++ .++........ +..........|+++ |+
T Consensus 31 ~~P~~ia~-------~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~---------v~~~g~~~p~gia~~-----pdf 86 (352)
T 2ism_A 31 EVPWALAF-------LPDGGMLIA-ERPGRIRLFR--EGRLSTYAELS---------VYHRGESGLLGLALH-----PRF 86 (352)
T ss_dssp SCEEEEEE-------CTTSCEEEE-ETTTEEEEEE--TTEEEEEEECC---------CCCSTTCSEEEEEEC-----TTT
T ss_pred CCceEEEE-------cCCCeEEEE-eCCCeEEEEE--CCCccEeecce---------EeecCCCCceeEEEC-----CCC
Confidence 34578999 889986555 5669999998 33321111000 001112356789998 76
Q ss_pred ---ceEEEEEeCC-----CcEEEeeeccCCCee---eEee-eee---cccCceeEEEEcCCCCEEEEec
Q 021036 208 ---LMLLAVGKGS-----GSFDLWKCDISCNKF---DKVG-SYN---AHDQVVTGLAWAFDGCCLYSCS 261 (318)
Q Consensus 208 ---~~~l~~~~~d-----g~i~vw~~~~~~~~~---~~~~-~~~---~h~~~v~~~~~~~~~~~l~s~~ 261 (318)
+.++++-... +.|..|+.+ .... +.+. .+. +.......++|.|+|.+.++.+
T Consensus 87 ~~~g~lYv~~~~~~~~~~~~v~r~~~~--~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 87 PQEPYVYAYRTVAEGGLRNQVVRLRHL--GERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp TTSCEEEEEEEECTTSSEEEEEEEEEC--SSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred CCCCEEEEEEecCCCCCccEEEEEEeC--CCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 4444443332 566666443 3211 1221 122 1111236899999998666643
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.02 E-value=1 Score=42.14 Aligned_cols=155 Identities=12% Similarity=-0.127 Sum_probs=82.6
Q ss_pred cCCCCC-ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCC-CcEEEEEeC
Q 021036 78 NGSSNW-FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNP-QVLLVTGSS 155 (318)
Q Consensus 78 ~~~s~~-~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~-~~~l~s~~~ 155 (318)
++++.. ++++++-...+.|.+.+++... ....+.........|++ .+. +.++++-..
T Consensus 476 LAvD~~~~~LY~tD~~~~~I~v~~ldG~~--------------~~~l~~~~l~~P~gIaV-------Dp~~g~LYwtD~g 534 (791)
T 3m0c_C 476 LAVDWIHSNIYWTDSVLGTVSVADTKGVK--------------RKTLFRENGSKPRAIVV-------DPVHGFMYWTDWG 534 (791)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSSS--------------EEEEEECTTCCEEEEEE-------ETTTTEEEEEECS
T ss_pred eeeeecCCcEEEEecCCCeEEEEeCCCCe--------------EEEEEeCCCCCcceEEE-------ecCCCCEEEecCC
Confidence 444433 3566666778889999887532 11122223345788999 554 444444333
Q ss_pred C-CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEE-eCCCcEEEeeeccCCCeee
Q 021036 156 D-GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVG-KGSGSFDLWKCDISCNKFD 233 (318)
Q Consensus 156 d-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~-~~dg~i~vw~~~~~~~~~~ 233 (318)
. +.|...++........+.. .-...+.|+++ +.+..|+.+ ...+.|..++++ .....
T Consensus 535 ~~~~I~~~~~dG~~~~~lv~~--------------~l~~P~GLavD-----~~~~~LYwaD~~~~~I~~~d~d--G~~~~ 593 (791)
T 3m0c_C 535 TPAKIKKGGLNGVDIYSLVTE--------------NIQWPNGITLD-----LLSGRLYWVDSKLHSISSIDVN--GGNRK 593 (791)
T ss_dssp SSCEEEEEETTSCCEEEEECS--------------SCSCEEEEEEE-----TTTTEEEEEETTTTEEEEEETT--SCSCE
T ss_pred CCCeEEEEecCCCceEEEEeC--------------CCCCceEEEEe-----cCCCeEEEEeCCCCcEEEEecC--CCceE
Confidence 3 6788888864432222211 11256789998 555444444 456678777543 33322
Q ss_pred EeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCc
Q 021036 234 KVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNS 275 (318)
Q Consensus 234 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 275 (318)
.+..-.+.-....+|++.. +.++++-...+.|...+..++.
T Consensus 594 ~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~ 634 (791)
T 3m0c_C 594 TILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGS 634 (791)
T ss_dssp EEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred EEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCc
Confidence 2222111122345666532 2344455566788888866553
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.67 Score=38.71 Aligned_cols=108 Identities=16% Similarity=0.040 Sum_probs=57.1
Q ss_pred ccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcc-eeeeecccccccccceeeeeecccceeEEEEeeccCCCC
Q 021036 129 SWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQE-LQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPR 207 (318)
Q Consensus 129 ~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~ 207 (318)
..-..|+| .++|+++++ ..++.|+++|. .++ .+..+.. ..........|+++ |+
T Consensus 29 ~~P~~ia~-------~pdG~l~V~-e~~g~I~~~d~-~G~~~~~~~~v-----------~~~g~~g~~gia~~-----pd 83 (354)
T 3a9g_A 29 EVPWSIAP-------LGGGRYLVT-ERPGRLVLISP-SGKKLVASFDV-----------ANVGEAGLLGLALH-----PE 83 (354)
T ss_dssp SCEEEEEE-------EETTEEEEE-ETTTEEEEECS-SCEEEEEECCC-----------CCSTTCSEEEEEEC-----TT
T ss_pred CCCeEEEE-------cCCCeEEEE-eCCCEEEEEeC-CCceEeeccce-----------eecCCCceeeEEeC-----CC
Confidence 45688999 788875554 56699998873 343 1111110 01112356789998 75
Q ss_pred ----ceEEEEEeC---C----CcEEEeeeccCCCe---eeEe-eeeec-ccCceeEEEEcCCCCEEEEec
Q 021036 208 ----LMLLAVGKG---S----GSFDLWKCDISCNK---FDKV-GSYNA-HDQVVTGLAWAFDGCCLYSCS 261 (318)
Q Consensus 208 ----~~~l~~~~~---d----g~i~vw~~~~~~~~---~~~~-~~~~~-h~~~v~~~~~~~~~~~l~s~~ 261 (318)
+.++++-+. + ..|..|+.+..... .+.+ ..+.. .......++|.|+|.++++.+
T Consensus 84 f~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G 153 (354)
T 3a9g_A 84 FPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG 153 (354)
T ss_dssp TTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred CCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence 555444432 2 45666644322111 1111 11221 111246799999998666644
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.73 Score=38.36 Aligned_cols=119 Identities=13% Similarity=-0.028 Sum_probs=64.2
Q ss_pred eeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeec
Q 021036 123 LFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILP 202 (318)
Q Consensus 123 ~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 202 (318)
.+...-..-+.|+| .++|+++++--..|.|++++...++........ .+..........|+++
T Consensus 26 ~va~gL~~P~~ia~-------~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~--------~v~~~g~~GllGia~~-- 88 (347)
T 3das_A 26 TVATGLNSPWGLAP-------LPGGDLLVSSRDEATITRVDAKTGRKTELGEVP--------GVSPSGEGGLLGIALS-- 88 (347)
T ss_dssp EEECCCSSEEEEEE-------CTTSCEEEEETTTCEEEEECTTTCCEEEEEECT--------TCCCBTTBSEEEEEEC--
T ss_pred EeecCCCCceEEEE-------cCCCcEEEEEecCCEEEEEECCCCcEeeecccC--------ceeecCCCCceeeEec--
Confidence 34333456689999 899988777765899999986655432111000 0111223467889998
Q ss_pred cCCCC----ceEEEEEe--CCCcEEEeeeccCC------CeeeEee-eee-cccCceeEEEEcCCCCEEEEec
Q 021036 203 VQSPR----LMLLAVGK--GSGSFDLWKCDISC------NKFDKVG-SYN-AHDQVVTGLAWAFDGCCLYSCS 261 (318)
Q Consensus 203 ~~~~~----~~~l~~~~--~dg~i~vw~~~~~~------~~~~~~~-~~~-~h~~~v~~~~~~~~~~~l~s~~ 261 (318)
|+ +.+.++-+ .++.|.-|.++... ...+.+. .+. ........|.|.|||.+.++.+
T Consensus 89 ---Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 89 ---PDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp ---TTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred ---cccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence 74 44444322 34455555433210 1111221 121 1112235799999998777654
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.83 Score=37.59 Aligned_cols=144 Identities=10% Similarity=-0.004 Sum_probs=71.6
Q ss_pred cccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCC
Q 021036 128 NSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPR 207 (318)
Q Consensus 128 ~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~ 207 (318)
...+.+|.+ .+ +..++ ++.++.|.. ..+.|+.-........ ....+..+.+. ++
T Consensus 79 ~~~~~~i~~-------~~-~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~-----------~~~~~~~i~~~-----~~ 132 (327)
T 2xbg_A 79 DYRFNSVSF-------QG-NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPK-----------LPGSPRLIKAL-----GN 132 (327)
T ss_dssp CCEEEEEEE-------ET-TEEEE-EEETTEEEE-ESSTTSSCEECCCCTT-----------CSSCEEEEEEE-----ET
T ss_pred CccEEEEEe-------cC-CeEEE-EECCCeEEE-ECCCCCCceECccccC-----------CCCCeEEEEEE-----CC
Confidence 446888888 44 44444 445564433 3333443332221100 01134566666 56
Q ss_pred ceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCC
Q 021036 208 LMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPG 287 (318)
Q Consensus 208 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~ 287 (318)
+..++.+. +|.|..- .-....++.+. ......+..+.+.+++.+++.+...+..+-.|-.......+. .+.
T Consensus 133 ~~~~~~~~-~g~v~~S--~DgG~tW~~~~--~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~-~~~--- 203 (327)
T 2xbg_A 133 GSAEMITN-VGAIYRT--KDSGKNWQALV--QEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN-RTT--- 203 (327)
T ss_dssp TEEEEEET-TCCEEEE--SSTTSSEEEEE--CSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE-CCS---
T ss_pred CCEEEEeC-CccEEEE--cCCCCCCEEee--cCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC-CCC---
Confidence 66666664 5654332 11233454433 234557889999999888776654333333332122222221 111
Q ss_pred ccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 288 LQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 288 ~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
...+..+++.++++.++.+
T Consensus 204 ----------~~~~~~~~~~~~g~~~~~~ 222 (327)
T 2xbg_A 204 ----------SRRLHNMGFTPDGRLWMIV 222 (327)
T ss_dssp ----------SSCEEEEEECTTSCEEEEE
T ss_pred ----------CCccceeEECCCCCEEEEe
Confidence 1255677777777665543
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=95.47 E-value=0.91 Score=38.75 Aligned_cols=124 Identities=15% Similarity=0.102 Sum_probs=74.5
Q ss_pred cEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccc----eeeeeecccceeEEEEeeccCC
Q 021036 130 WITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLL----KEVVTVNTVPISVLSLILPVQS 205 (318)
Q Consensus 130 ~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~l~~~~~~~~ 205 (318)
.|..+.. +++|++|+..+. ..|.|-.+..+.....-..-..++... .........+|..+.|+
T Consensus 67 ~i~qlvl-------SpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWH----- 133 (452)
T 3pbp_A 67 DTFHVIS-------STSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFH----- 133 (452)
T ss_dssp TTCEEEE-------CTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEEC-----
T ss_pred ceeEEEE-------CCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEec-----
Confidence 5777888 899999998864 588888887332111100000001100 00111125679999998
Q ss_pred CC---ceEEEEEeCCCcEEEeeeccCCCeeeEeeeee---------cccCceeEEEEcCCCCEEEE--ecCCCcEEEE
Q 021036 206 PR---LMLLAVGKGSGSFDLWKCDISCNKFDKVGSYN---------AHDQVVTGLAWAFDGCCLYS--CSQDNFVRSW 269 (318)
Q Consensus 206 ~~---~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~---------~h~~~v~~~~~~~~~~~l~s--~~~d~~v~iw 269 (318)
|- +..|++-..|+.|++||+.....+ +. .+. .....|.+++|..++-.|.. ....|.|+-.
T Consensus 134 Pl~~~ds~LVVLtsD~~Ir~yDl~~s~~~--P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 134 PKSYRDSCIVVLKEDDTITMFDILNSQEK--PI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp TTBGGGCEEEEEETTSCEEEEETTCTTSC--CE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred cccCCCCeEEEEecCCEEEEEEcccCCCC--Cc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 54 458888889999999977653333 22 221 12256889999987664444 5577777544
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=1.4 Score=39.85 Aligned_cols=150 Identities=12% Similarity=-0.031 Sum_probs=84.9
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCC-CCcEEEEEeCCCcEEEE
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSN-PQVLLVTGSSDGSVRIW 162 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~-~~~~l~s~~~d~~v~iw 162 (318)
+.++++-...+.|+.++.+.... + ..+.........+++ .. .++++++-+..+.|.+.
T Consensus 361 ~~ly~sD~~~~~I~r~~~~g~~~------------~--~v~~~~~~~p~GlAv-------D~~~~~lY~tD~~~~~I~v~ 419 (619)
T 3s94_A 361 GYIYWTDDEVRAIRRSFIDGSGS------------Q--FVVTAQIAHPDGIAV-------DWVARNLYWTDTGTDRIEVT 419 (619)
T ss_dssp TEEEEEETTTTEEEEEETTSCSC------------E--EEECSSCSCCCEEEE-------ETTTTEEEEEETTTTEEEEE
T ss_pred CeEEEEeCCCCeEEEEEcCCCcc------------E--EEEECCCCCcCceEE-------ecccCcEEEEeCCCCcEEEE
Confidence 35555555678888888875321 1 112222234567777 43 45566666667889999
Q ss_pred ECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCC-ceEEEEEeC-CCcEEEeeeccCCCeeeEeeeeec
Q 021036 163 DGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPR-LMLLAVGKG-SGSFDLWKCDISCNKFDKVGSYNA 240 (318)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~-~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~ 240 (318)
++..... ..+... .-.....|++. |. |.++.+-.. .+.|...++| ......+ ...
T Consensus 420 ~~~G~~~-~~l~~~-------------~l~~P~~iavd-----p~~G~ly~tD~g~~~~I~r~~~d--G~~~~~l--~~~ 476 (619)
T 3s94_A 420 RLNGTMR-KILISE-------------DLEEPRAIVLD-----PMVGYMYWTDWGEIPKIERAALD--GSDRVVL--VNT 476 (619)
T ss_dssp ETTSCSC-EEEECT-------------TCCSEEEEEEE-----TTTTEEEEEECSSSCEEEEEETT--SCSCEEE--ECS
T ss_pred eCCCCeE-EEEEEC-------------CCCCeeeEEEE-----cCCCcEEEecCCCCCEEEEEccC--CCccEEE--EeC
Confidence 8875432 222111 11256789998 65 655555432 3566655333 3221122 122
Q ss_pred ccCceeEEEEcCCCCEEEEe-cCCCcEEEEEecCCcee
Q 021036 241 HDQVVTGLAWAFDGCCLYSC-SQDNFVRSWIFHGNSLS 277 (318)
Q Consensus 241 h~~~v~~~~~~~~~~~l~s~-~~d~~v~iwd~~~~~~~ 277 (318)
.-.....+++++++..|..+ +..+.|..+++.+....
T Consensus 477 ~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~ 514 (619)
T 3s94_A 477 SLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRR 514 (619)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE
T ss_pred CCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceE
Confidence 23467889999876666555 45578888988765443
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=95.41 E-value=1.5 Score=40.38 Aligned_cols=110 Identities=15% Similarity=0.161 Sum_probs=62.7
Q ss_pred CCcEEEEEeCCC------cEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCC-
Q 021036 146 PQVLLVTGSSDG------SVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSG- 218 (318)
Q Consensus 146 ~~~~l~s~~~d~------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg- 218 (318)
++.+++.|+.++ .+.+||..+.+-...-.... .. .-.+++.. .++.+++.|+.++
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~------------~R-~~h~~~~~-----~~~~iyv~GG~~~~ 512 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSH------------TR-FRHSACSL-----PDGNVLILGGVTEG 512 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSB------------CC-BSCEEEEC-----TTSCEEEECCBCSS
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCC------------Cc-ccceEEEE-----cCCEEEEECCCCCC
Confidence 677788877543 47788887654322111000 00 11122332 4788888887655
Q ss_pred -cEEEeeeccCCCeeeEeee---eecccCceeEEEEcCC-CCEEEEecC--C-----CcEEEEEecCCc
Q 021036 219 -SFDLWKCDISCNKFDKVGS---YNAHDQVVTGLAWAFD-GCCLYSCSQ--D-----NFVRSWIFHGNS 275 (318)
Q Consensus 219 -~i~vw~~~~~~~~~~~~~~---~~~h~~~v~~~~~~~~-~~~l~s~~~--d-----~~v~iwd~~~~~ 275 (318)
.+.+| |..+.+|..+.. +........++.+..+ +++++.|+. + ..+.+||+.+..
T Consensus 513 ~~v~~y--d~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 513 PAMLLY--NVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp CSEEEE--ETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred CCEEEE--ECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 56676 777888766553 2111222233555655 667777765 2 458899998877
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=95.38 E-value=0.89 Score=39.44 Aligned_cols=19 Identities=11% Similarity=-0.085 Sum_probs=14.7
Q ss_pred cceeEEEEeeccCCCCceEEEEEe
Q 021036 192 VPISVLSLILPVQSPRLMLLAVGK 215 (318)
Q Consensus 192 ~~v~~l~~~~~~~~~~~~~l~~~~ 215 (318)
+....|+|. |+|.++++.+
T Consensus 144 H~~~~l~f~-----pDG~Lyv~~G 162 (454)
T 1cru_A 144 HQSGRLVIG-----PDQKIYYTIG 162 (454)
T ss_dssp CCEEEEEEC-----TTSCEEEEEC
T ss_pred CCCCeEeEC-----CCCeEEEEEC
Confidence 356889999 9998777654
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=95.21 E-value=1.2 Score=41.02 Aligned_cols=118 Identities=10% Similarity=0.036 Sum_probs=62.2
Q ss_pred CCCcEEEEEeCCC--cEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCC-ceEEEEEeC--C--
Q 021036 145 NPQVLLVTGSSDG--SVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPR-LMLLAVGKG--S-- 217 (318)
Q Consensus 145 ~~~~~l~s~~~d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~-~~~l~~~~~--d-- 217 (318)
.++.+++.|+.++ .+.+||..+.+-...-.....+. .......+.+. .+ +.+++.|+. +
T Consensus 499 ~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~---------~r~~~~a~v~~-----~~~~~iyv~GG~~~~~~ 564 (695)
T 2zwa_A 499 PDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQ---------NSLVSAGLEFD-----PVSKQGIILGGGFMDQT 564 (695)
T ss_dssp TTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGG---------SCCBSCEEEEE-----TTTTEEEEECCBCTTSS
T ss_pred cCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCC---------cccceeEEEEe-----CCCCEEEEECCcCCCCC
Confidence 3777888887654 68999988764332211000100 00112234445 44 778888875 2
Q ss_pred ---CcEEEeeeccCCCe------eeEeeeeecccCceeEEEEcCCCCEEEEecC--------CCcEEEEEecCCceee
Q 021036 218 ---GSFDLWKCDISCNK------FDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQ--------DNFVRSWIFHGNSLSQ 278 (318)
Q Consensus 218 ---g~i~vw~~~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~--------d~~v~iwd~~~~~~~~ 278 (318)
..+.+| |..+.. +..+.........-.++....++.+++.|+. ...+.+||+.+.....
T Consensus 565 ~~~~~v~~y--d~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~ 640 (695)
T 2zwa_A 565 TVSDKAIIF--KYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTS 640 (695)
T ss_dssp CBCCEEEEE--EECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEEE
T ss_pred eeeCcEEEE--EccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEEE
Confidence 346677 555555 4444332111111112223333677777774 3469999998876653
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=94.66 E-value=1.4 Score=43.62 Aligned_cols=230 Identities=10% Similarity=0.078 Sum_probs=116.7
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchh------c---cccccccceeeeeccccc------CCCC----ccccc
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQY------A---SRSAMLHSLAVAWSPVLR------LSSK----KYPVP 76 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~------~---~~~~~~~~~~~~w~p~~~------~~~~----~~~v~ 76 (318)
+...+++--...++.|+|+++...+.......- . .-+.+.......|+-.+. +.+| ...|.
T Consensus 75 P~~~iiALrag~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIi 154 (1630)
T 1xi4_A 75 PASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQII 154 (1630)
T ss_pred CCcceEEEecCCeEEEeehHHhhhhcccccCCCceEEEecCCCeeEEEcCCeEEEeccCCCCccHHHHhcchhcccCeeE
Confidence 344566666688999999988776665443210 0 011122233567776431 2223 23466
Q ss_pred ccCCCCCccEEEEe-------cCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcE
Q 021036 77 QNGSSNWFSILAVG-------GRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVL 149 (318)
Q Consensus 77 ~~~~s~~~~~l~~g-------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~ 149 (318)
.-..+++.++++.. ...|.+.+|+.+.+ .-+.+.||.+....+.. +.......+
T Consensus 155 nY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~---------------~sQ~iegha~~F~~~~~----~~~~~~~~l 215 (1630)
T 1xi4_A 155 NYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK---------------VSQPIEGHAASFAQFKM----EGNAEESTL 215 (1630)
T ss_pred EeeeCCCCCeEEEEeeccCCCcccceeeeeecccc---------------cchhhhHhHhhhheecc----CCCCCCceE
Confidence 66677787776643 24678889988753 23456677655444433 001112233
Q ss_pred EEEEeC---CCcEEEEECCCc-ceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeee
Q 021036 150 LVTGSS---DGSVRIWDGYIQ-ELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKC 225 (318)
Q Consensus 150 l~s~~~---d~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~ 225 (318)
++.+.. .+.+.|-++... .....+... ...+........+.|| .+..+ +.-..+..-+.-|.|.+|
T Consensus 216 ~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk--~~~~~~~~~~~~Dfpv-~~~vs-----~k~g~iy~itk~G~~~~~-- 285 (1630)
T 1xi4_A 216 FCFAVRGQAGGKLHIIEVGTPPTGNQPFPKK--AVDVFFPPEAQNDFPV-AMQIS-----EKHDVVFLITKYGYIHLY-- 285 (1630)
T ss_pred EEEEEecCCCceEEEEecCCCccCCCCCccc--cccccCCcccccCcce-EEEec-----cccCEEEEEecCceEEEE--
Confidence 333322 268888887543 111111100 0001001112233344 56666 666778888889999999
Q ss_pred ccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCce
Q 021036 226 DISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSL 276 (318)
Q Consensus 226 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 276 (318)
|+.++.. +..-+-...+|...+-+....=++.....|.|.--.+....+
T Consensus 286 d~~t~~~--i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~i 334 (1630)
T 1xi4_A 286 DLETGTC--IYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI 334 (1630)
T ss_pred ecccchh--hhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEccchh
Confidence 5666663 322222233443333333322244444666665555554443
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=93.77 E-value=1.6 Score=33.72 Aligned_cols=109 Identities=12% Similarity=-0.068 Sum_probs=55.5
Q ss_pred EEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceE
Q 021036 131 ITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLML 210 (318)
Q Consensus 131 v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~ 210 (318)
-.++.| .++|.+.++ .||.|.-++-.+.....-+.... .+-...-..+..|.+. |+|.+
T Consensus 90 F~a~~f-------D~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~-------~vg~~gw~~~~~lff~-----p~G~L 148 (236)
T 1tl2_A 90 FQFLFF-------DPNGYLYAV--SKDKLYKASPPQSDTDNWIARAT-------EVGSGGWSGFKFLFFH-----PNGYL 148 (236)
T ss_dssp CSEEEE-------CTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSE-------EEECSSGGGEEEEEEC-----TTSCE
T ss_pred ceEEEE-------CCCCCEEEe--CCCEEEEeCCCcCCCCceecccc-------EeccCCCCceEEEEEC-----CCceE
Confidence 367888 889977777 56888777643221111000000 0001112367888998 99998
Q ss_pred EEEEeCCCcEEEeeeccCCC--eeeEeeeee--cccCceeEEEEcCCCCEEEEecCCCc
Q 021036 211 LAVGKGSGSFDLWKCDISCN--KFDKVGSYN--AHDQVVTGLAWAFDGCCLYSCSQDNF 265 (318)
Q Consensus 211 l~~~~~dg~i~vw~~~~~~~--~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~d~~ 265 (318)
.++. |+.++-.. ...+. .+....+.- ..-..-.-+.|.+++.+++.. ++.
T Consensus 149 yav~--dg~lyr~~-~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~ 202 (236)
T 1tl2_A 149 YAVH--GQQFYKAL-PPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGK 202 (236)
T ss_dssp EEEE--TTEEEEEC-CCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTE
T ss_pred EEEe--CCcEEecC-CCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCe
Confidence 8888 77654431 11111 000001111 111233446688888766555 563
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=93.70 E-value=2.3 Score=34.49 Aligned_cols=70 Identities=11% Similarity=0.039 Sum_probs=40.8
Q ss_pred CceEEEEEeCC-------CcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecC------CCcEEEEEecC
Q 021036 207 RLMLLAVGKGS-------GSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQ------DNFVRSWIFHG 273 (318)
Q Consensus 207 ~~~~l~~~~~d-------g~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~------d~~v~iwd~~~ 273 (318)
++.+++.|+.+ ..+.+| |..+.+++.+..+......-..+. .++.+++.|+. -..+.+||+.+
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~y--d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~ 184 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCY--DPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKK 184 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEE--ETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTT
T ss_pred CCEEEEEcCccCCCCcccceEEEE--eCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCC
Confidence 56777777753 124455 777888766554332111111222 45666677764 24589999988
Q ss_pred Cceeeee
Q 021036 274 NSLSQVS 280 (318)
Q Consensus 274 ~~~~~~~ 280 (318)
.....+.
T Consensus 185 ~~W~~~~ 191 (318)
T 2woz_A 185 GDWKDLA 191 (318)
T ss_dssp TEEEEEC
T ss_pred CEEEECC
Confidence 7766554
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.68 E-value=2.6 Score=34.99 Aligned_cols=57 Identities=14% Similarity=0.206 Sum_probs=34.9
Q ss_pred ceeEEEEcCCCCEEEEecCCCcEEEEEecCCc-------eeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 244 VVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNS-------LSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 244 ~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-------~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
....++| .+|.++++.-..+.|...++.... ...+. . -...+..+++.|||.+.++.
T Consensus 269 ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~--~-------------~~~rp~~v~~~pdG~lyv~~ 332 (352)
T 2ism_A 269 PPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL--S-------------GFGRLREVQVGPDGALYVTT 332 (352)
T ss_dssp CEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE--E-------------SSCCEEEEEECTTSCEEEEE
T ss_pred CCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec--c-------------cCCCeeEEEECCCCcEEEEE
Confidence 4567777 466666666666777777776432 11111 1 11367899999999766553
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=93.66 E-value=1.1 Score=34.58 Aligned_cols=112 Identities=10% Similarity=-0.091 Sum_probs=60.9
Q ss_pred ccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCc
Q 021036 129 SWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRL 208 (318)
Q Consensus 129 ~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ 208 (318)
..+..++| .|+|.+.+. .+|.+.-.+..+.+...-+.. .. .+-.........+.|. |+|
T Consensus 41 ~~~~~laf-------~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s-~t------~IG~~Gw~~F~a~~fD-----~~G 99 (236)
T 1tl2_A 41 SNFKFLFL-------SPGGELYGV--LNDKIYKGTPPTHDNDNWMGR-AK------KIGNGGWNQFQFLFFD-----PNG 99 (236)
T ss_dssp TTCSEEEE-------CTTSCEEEE--ETTEEEEESCCCSTTCCHHHH-CE------EEECSCGGGCSEEEEC-----TTS
T ss_pred ccceeEEE-------CCCccEEEE--eCCeEEEECCCCCCccccccc-cc------EecccccccceEEEEC-----CCC
Confidence 36779999 788886666 667666555543221111110 00 0000011124678888 999
Q ss_pred eEEEEEeCCCcEEEeeeccCC-C--eeeEeee-eec-ccCceeEEEEcCCCCEEEEecCCCcEE
Q 021036 209 MLLAVGKGSGSFDLWKCDISC-N--KFDKVGS-YNA-HDQVVTGLAWAFDGCCLYSCSQDNFVR 267 (318)
Q Consensus 209 ~~l~~~~~dg~i~vw~~~~~~-~--~~~~~~~-~~~-h~~~v~~~~~~~~~~~l~s~~~d~~v~ 267 (318)
.+.++ .||.|+-++ ..+ + .+.-..+ +.. -=..+..|.|.|+|.+.+.. |+.++
T Consensus 100 ~LYav--~dG~iyr~~--pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 100 YLYAV--SKDKLYKAS--PPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY 157 (236)
T ss_dssp CEEEE--ETTEEEEES--CCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred CEEEe--CCCEEEEeC--CCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence 98888 469887773 311 1 1100001 100 11457899999999876666 77743
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=93.61 E-value=1.1 Score=37.33 Aligned_cols=102 Identities=15% Similarity=0.083 Sum_probs=57.4
Q ss_pred ceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeee---cccCceeEEEEcCC---CCEEEEecC----
Q 021036 193 PISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYN---AHDQVVTGLAWAFD---GCCLYSCSQ---- 262 (318)
Q Consensus 193 ~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~---~h~~~v~~~~~~~~---~~~l~s~~~---- 262 (318)
....++|. |+|++++ +..+|.|+++ +. .++ +.+..+. ........|+++|+ +..|..+..
T Consensus 30 ~P~~ia~~-----pdG~l~V-~e~~g~I~~~--d~-~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~ 99 (354)
T 3a9g_A 30 VPWSIAPL-----GGGRYLV-TERPGRLVLI--SP-SGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAE 99 (354)
T ss_dssp CEEEEEEE-----ETTEEEE-EETTTEEEEE--CS-SCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECG
T ss_pred CCeEEEEc-----CCCeEEE-EeCCCEEEEE--eC-CCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCC
Confidence 45688998 8998554 4566999888 42 333 3333321 22345789999997 444443322
Q ss_pred C----CcEEEEEecCC--cee---ee-ecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 263 D----NFVRSWIFHGN--SLS---QV-SIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 263 d----~~v~iwd~~~~--~~~---~~-~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
+ ..|..|+.... .+. .+ ...+ ....|. ...++|.|||.+.++
T Consensus 100 ~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~---------~~~~h~--~~~l~~~pDG~Lyvt 151 (354)
T 3a9g_A 100 GGHIRNRVIRGRLDGSTFKLKEVKTLIDGIP---------GAYIHN--GGRIRFGPDGMLYIT 151 (354)
T ss_dssp GGCEEEEEEEEEECSSSCCEEEEEEEEEEEE---------CCSSCC--CCCEEECTTSCEEEE
T ss_pred CCCcceEEEEEEECCCCcCcCccEEEEEcCC---------CCCCcC--CceEEECCCCcEEEE
Confidence 3 56777777654 111 10 0000 011132 367999999976665
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=93.12 E-value=3 Score=33.90 Aligned_cols=67 Identities=7% Similarity=-0.020 Sum_probs=38.6
Q ss_pred CCceEEEEEe--CCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecC-CCcEEEEEecCCceeee
Q 021036 206 PRLMLLAVGK--GSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQ-DNFVRSWIFHGNSLSQV 279 (318)
Q Consensus 206 ~~~~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d~~v~iwd~~~~~~~~~ 279 (318)
++++.|+-.. .++.-.||.+++.....+ .+..+.. ..|+|+++.|+-.+. ...|..-++.++....+
T Consensus 113 ~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~---~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l 182 (302)
T 3s25_A 113 LIGNYIYYLHYDTQTATSLYRIRIDGEEKK---KIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALF 182 (302)
T ss_dssp EETTEEEEEEESSSSCEEEEEEETTSCCCE---EEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEE
T ss_pred EeCCEEEEEeecCCCCceEEEEECCCCCeE---EEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEE
Confidence 6677776665 455566665566544322 2333322 346778887775554 56777777766554433
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=93.08 E-value=3.3 Score=34.38 Aligned_cols=145 Identities=15% Similarity=0.055 Sum_probs=71.8
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeee----ccccccEEEEEeeeecCCCCCC----CcEEEEEe-
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLF----QAHNSWITSISLAVLSSDSSNP----QVLLVTGS- 154 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~----~~h~~~v~~~~~~p~~~~~~~~----~~~l~s~~- 154 (318)
|.++++--..|.|++++..+++. ..+..+ .........|++ +|+ +.+.++-+
T Consensus 43 G~llVter~~G~I~~v~~~~g~~------------~~v~~~~~v~~~g~~GllGia~-------~Pdf~~~g~lYv~yt~ 103 (347)
T 3das_A 43 GDLLVSSRDEATITRVDAKTGRK------------TELGEVPGVSPSGEGGLLGIAL-------SPDYASDHMVYAYFTS 103 (347)
T ss_dssp SCEEEEETTTCEEEEECTTTCCE------------EEEEECTTCCCBTTBSEEEEEE-------CTTHHHHCEEEEEEEC
T ss_pred CcEEEEEecCCEEEEEECCCCcE------------eeecccCceeecCCCCceeeEe-------ccccccCCEEEEEEec
Confidence 38777766689999988655431 122222 223456789999 663 44444322
Q ss_pred -CCCcEEEEECCCccee-eeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeC-------------CCc
Q 021036 155 -SDGSVRIWDGYIQELQ-KSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKG-------------SGS 219 (318)
Q Consensus 155 -~d~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~-------------dg~ 219 (318)
.++.|.-|.+..+... ..+...+ .++........+.-..|.|. |+|.++++.+. .|.
T Consensus 104 ~~~~~v~R~~~~~~~~~~~~~~~~~---~i~~~~p~~~~H~g~~l~fg-----pDG~Lyvt~Gd~~~~~~~qd~~~~~G~ 175 (347)
T 3das_A 104 ASDNRIVRMLYDEKKPSGEQLGAPD---TVFRGIPKGVIHNGGRIAFG-----PDKMLYAGTGESGDTGLSQDRKSLGGK 175 (347)
T ss_dssp SSSEEEEEEEBCTTSCTTCCBCCCE---EEEEEECCCSSCCCCCEEEC-----TTSCEEEECBCTTCGGGTTCTTCSTTC
T ss_pred CCCCEEEEEEeCCCCcccccCCCcE---EEEEcCCCCCCccCccccCC-----CCCCEEEEECCCCCCccccCCCCCCCE
Confidence 3445555555432110 0000000 00001111122345678998 89987777542 344
Q ss_pred EEEeeeccCCCe-------eeEeeeeecccCceeEEEEcCCCCEEEE
Q 021036 220 FDLWKCDISCNK-------FDKVGSYNAHDQVVTGLAWAFDGCCLYS 259 (318)
Q Consensus 220 i~vw~~~~~~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~l~s 259 (318)
|.-. +..... -..+.. .+|.. ...++|+|+|.++++
T Consensus 176 IlRi--~~dG~ip~~nPf~~~~i~a-~G~RN-p~Gla~dp~G~L~~~ 218 (347)
T 3das_A 176 ILRM--TPDGEPAPGNPFPGSPVYS-YGHRN-VQGLAWDDKQRLFAS 218 (347)
T ss_dssp EEEE--CTTSSBCTTCSSTTCCEEE-BCCSB-CCEEEECTTCCEEEE
T ss_pred EEEE--eCCCCccCCCCCCCCeEEe-eCCCC-cceEEECCCCCEEEE
Confidence 4443 433220 001221 24543 468999998876554
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=91.51 E-value=4.8 Score=32.65 Aligned_cols=106 Identities=6% Similarity=-0.002 Sum_probs=53.3
Q ss_pred CCCCcEEEEEeC-CCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEE
Q 021036 144 SNPQVLLVTGSS-DGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDL 222 (318)
Q Consensus 144 ~~~~~~l~s~~~-d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~v 222 (318)
++.++.|+-.+. ...|...++..+.....+.. .. ...+. |++..|+-...++.-+|
T Consensus 153 ~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~-----------------~~-~~~~~-----P~g~~iy~t~~~~~~~I 209 (302)
T 3s25_A 153 NTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC-----------------NC-YKPVV-----LDDTNVYYMDVNRDNAI 209 (302)
T ss_dssp EEETTEEEEECTTTCCEEEEETTTTEEEEEECS-----------------CE-EEEEE-----EETTEEEEEEGGGTTEE
T ss_pred eEECCEEEEEeCCCceEEEEECCCCCEEEEeCC-----------------Cc-cceee-----ecCCEEEEEEcCCCcEE
Confidence 345555654443 56788878765543322211 11 12344 66766666554432445
Q ss_pred eeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEec--CCCcEEEEEecCCceeee
Q 021036 223 WKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCS--QDNFVRSWIFHGNSLSQV 279 (318)
Q Consensus 223 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~--~d~~v~iwd~~~~~~~~~ 279 (318)
+..++.....+. +. ...+ ..|+|++.+|..++ ....|..-++.+.....+
T Consensus 210 ~~~~ldG~~~~~---Lt--~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r~~l 261 (302)
T 3s25_A 210 VHVNINNPNPVV---LT--EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTGFKEL 261 (302)
T ss_dssp EEECSSSCCCEE---CS--CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSCCCEEE
T ss_pred EEEECCCCCeEE---Ee--CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCCccEEe
Confidence 544555544222 22 1222 33778888777553 235566666655444333
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=90.76 E-value=13 Score=36.41 Aligned_cols=117 Identities=15% Similarity=0.058 Sum_probs=69.6
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeC-CCcEEEEE
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSS-DGSVRIWD 163 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~-d~~v~iwd 163 (318)
..++.+. .+.+.++.++.++. ...... .-...|.|+++.|.... ...+++++.|.. |++|+|++
T Consensus 524 ~~vvva~-g~~l~~fel~~~~L------------~~~~~~-~l~~evscl~i~~~~~~-~~~s~~~aVg~~~d~tv~I~s 588 (1158)
T 3ei3_A 524 SQVVVAV-GRALYYLQIHPQEL------------RQISHT-EMEHEVACLDITPLGDS-NGLSPLCAIGLWTDISARILK 588 (1158)
T ss_dssp SEEEEEE-TTEEEEEEEETTEE------------EEEEEE-ECSSCEEEEECCCCSSS-TTCCSEEEEEETTTTEEEEEE
T ss_pred CEEEEEE-CCEEEEEEeeCCce------------eeeccc-CCCCceEEEEeecCCCC-cccccEEEEEECCCCEEEEEE
Confidence 3455544 57788888876431 122222 22567999998443221 224579999997 99999999
Q ss_pred CCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCee
Q 021036 164 GYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKF 232 (318)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~ 232 (318)
+...+.+....... .....++.+... ....+|..|-.||.+.-+.+|..++..
T Consensus 589 L~~l~~~~~~~L~~-------------~~~p~si~l~~~---~~~~~L~igl~dG~l~~~~~d~~tg~l 641 (1158)
T 3ei3_A 589 LPSFELLHKEMLGG-------------EIIPRSILMTTF---ESSHYLLCALGDGALFYFGLNIETGLL 641 (1158)
T ss_dssp TTTCCEEEEEECCS-------------SCCEEEEEEEEE---TTEEEEEEEETTSEEEEEEECTTTCCE
T ss_pred CCCCCeEEEEECCC-------------CCCCcEEEEEEe---CCCcEEEEEeCCCeEEEEEEcCCCCcc
Confidence 98655443222111 012333433310 245678899999998888777666554
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=89.83 E-value=6.9 Score=32.46 Aligned_cols=18 Identities=17% Similarity=0.372 Sum_probs=11.9
Q ss_pred cEEEEecCCCcEEEEEcc
Q 021036 85 SILAVGGRSGKVSLWRIC 102 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~ 102 (318)
+.|+++...|.|++++..
T Consensus 30 ~~l~V~e~~G~i~~~~~~ 47 (353)
T 2g8s_A 30 HGMLITLRGGELRHWQAG 47 (353)
T ss_dssp CCEEEEETTTEEEEEETT
T ss_pred CEEEEEeCCceEEEEeCC
Confidence 723445567999988753
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.58 E-value=3.1 Score=34.45 Aligned_cols=71 Identities=11% Similarity=0.030 Sum_probs=42.7
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccc-cccEEEEEeeeecCCCCCCCcEEEEE-eCCCcEEEE
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAH-NSWITSISLAVLSSDSSNPQVLLVTG-SSDGSVRIW 162 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~p~~~~~~~~~~~l~s~-~~d~~v~iw 162 (318)
.+++.++.||.|.-.|.++|+ .+-.++.. ..++....- | ....++..++.. +.||.|..+
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~--------------~~W~~~~~~~~p~~~~~~-~---~~~~~~~~~vv~p~~dG~l~a~ 72 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGH--------------IIWSIEPENFQPLIEIQE-P---SRLETYETLIIEPFGDGNIYYF 72 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTE--------------EEEEECGGGSCCSEECCC-S---CTTTSSEEEEECCSTTTEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCc--------------EEEEecCCccCCcEEecC-C---ccccCCcEEEEEECCCCEEEEE
Confidence 588999999999999999865 33333332 122222221 0 001233344443 689999999
Q ss_pred ECCCcceeeee
Q 021036 163 DGYIQELQKSA 173 (318)
Q Consensus 163 d~~~~~~~~~~ 173 (318)
+..+|.....+
T Consensus 73 ~~~~G~~~~~~ 83 (339)
T 2be1_A 73 NAHQGLQKLPL 83 (339)
T ss_dssp ETTTEEEEEEE
T ss_pred ECCCCcEEeee
Confidence 99888554443
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=89.50 E-value=11 Score=33.55 Aligned_cols=82 Identities=13% Similarity=-0.033 Sum_probs=48.7
Q ss_pred cccCCCCCccEEEEec-CCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEe
Q 021036 76 PQNGSSNWFSILAVGG-RSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS 154 (318)
Q Consensus 76 ~~~~~s~~~~~l~~g~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~ 154 (318)
..+.++|+|+++++++ -+.++.+++++.-...-.... ............. .-.-...+| .++|....|-.
T Consensus 326 HGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~-~~~~~~~~ae~e~-GlGPlHt~F-------d~~G~aYTtlf 396 (638)
T 3sbq_A 326 HGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKL-ADPRDVIVGEPEL-GLGPLHTTF-------DGRGNAYTTLF 396 (638)
T ss_dssp CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCC-SCGGGGEEECCBC-CSCEEEEEE-------CSSSEEEEEET
T ss_pred cceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccc-cCcccceEeeccC-CCcccEEEE-------CCCCceEeeee
Confidence 4577888888876654 588899999984211000000 0000111222222 223456788 78886666777
Q ss_pred CCCcEEEEECCC
Q 021036 155 SDGSVRIWDGYI 166 (318)
Q Consensus 155 ~d~~v~iwd~~~ 166 (318)
-|..|.-|++..
T Consensus 397 idSqvvkWni~~ 408 (638)
T 3sbq_A 397 IDSQVVKWNMEE 408 (638)
T ss_dssp TTTEEEEEEHHH
T ss_pred ecceEEEEeccH
Confidence 899999999875
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=89.19 E-value=8.3 Score=31.71 Aligned_cols=59 Identities=8% Similarity=-0.028 Sum_probs=30.1
Q ss_pred CcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecC------CCcEEEEEe--cCCceeee
Q 021036 218 GSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQ------DNFVRSWIF--HGNSLSQV 279 (318)
Q Consensus 218 g~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~------d~~v~iwd~--~~~~~~~~ 279 (318)
..+.+| |..+.++..+..+......-.+++. -++++++.|+. ...+.+||+ .+.....+
T Consensus 168 ~~v~~y--d~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~ 234 (357)
T 2uvk_A 168 KFLLSF--DPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKL 234 (357)
T ss_dssp CEEEEE--ETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEEC
T ss_pred ccEEEE--eCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEec
Confidence 356666 7778888776554321111022222 24566666664 245777876 45554443
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.47 E-value=3.7 Score=33.95 Aligned_cols=114 Identities=11% Similarity=0.061 Sum_probs=63.5
Q ss_pred CcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEE-eCCCcEEEeee
Q 021036 147 QVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVG-KGSGSFDLWKC 225 (318)
Q Consensus 147 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~-~~dg~i~vw~~ 225 (318)
+.+++.++.||.|.-.|..+|+....+..... .++....-. ..+.++..++.. +.||.++.+
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~-------------~p~~~~~~~--~~~~~~~~~vv~p~~dG~l~a~-- 72 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENF-------------QPLIEIQEP--SRLETYETLIIEPFGDGNIYYF-- 72 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGS-------------CCSEECCCS--CTTTSSEEEEECCSTTTEEEEE--
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCcc-------------CCcEEecCC--ccccCCcEEEEEECCCCEEEEE--
Confidence 35789999999999999999999988765410 011000000 000133444443 578888887
Q ss_pred ccCCCeeeEeeeeec--ccCceeE---EEE-cC----CCCEEEEecCCCcEEEEEecCCcee
Q 021036 226 DISCNKFDKVGSYNA--HDQVVTG---LAW-AF----DGCCLYSCSQDNFVRSWIFHGNSLS 277 (318)
Q Consensus 226 ~~~~~~~~~~~~~~~--h~~~v~~---~~~-~~----~~~~l~s~~~d~~v~iwd~~~~~~~ 277 (318)
+..++..+....... ...++.. ... .+ .+..+++|+.+|.+.-.|+++++..
T Consensus 73 ~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~ 134 (339)
T 2be1_A 73 NAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEII 134 (339)
T ss_dssp ETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEE
T ss_pred ECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEE
Confidence 555554221111111 1112211 000 00 3457888999999999998887664
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=88.44 E-value=11 Score=32.36 Aligned_cols=107 Identities=8% Similarity=0.088 Sum_probs=67.3
Q ss_pred CCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEe
Q 021036 144 SNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLW 223 (318)
Q Consensus 144 ~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw 223 (318)
+|..+.++.-. ..++.++|+++.+.++.+...+ +|.-=.|- +.+.|+..+ +..|+-|
T Consensus 74 nP~~~iiALra-g~~lQiFnle~K~klks~~~~e---------------~VvfWkWi------s~~~l~lVT-~taVyHW 130 (494)
T 1bpo_A 74 NPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---------------DVTFWKWI------SLNTVALVT-DNAVYHW 130 (494)
T ss_dssp CSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS---------------CCCEEEEE------ETTEEEEEC-SSEEEEE
T ss_pred CCCCcEEEEec-CCeEEEEchHHhhhhcceecCC---------------CceEEEec------CCCeEEEEc-CCeeEEe
Confidence 45555566554 6899999999988877765444 34333443 334555544 6689999
Q ss_pred eeccCCCeeeEeeeeecc----cCceeEEEEcCCCCEEEEec-------CCCcEEEEEecCCce
Q 021036 224 KCDISCNKFDKVGSYNAH----DQVVTGLAWAFDGCCLYSCS-------QDNFVRSWIFHGNSL 276 (318)
Q Consensus 224 ~~~~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~l~s~~-------~d~~v~iwd~~~~~~ 276 (318)
+++-. .. ++..+..| ...|.....+++.++++..+ -.|.+.+|....+..
T Consensus 131 si~~~-s~--P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s 191 (494)
T 1bpo_A 131 SMEGE-SQ--PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS 191 (494)
T ss_dssp ESSSS-CC--CEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE
T ss_pred cccCC-CC--chhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc
Confidence 65432 22 55555544 34677777889999876443 247788888765443
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=85.07 E-value=16 Score=30.69 Aligned_cols=210 Identities=11% Similarity=0.049 Sum_probs=109.5
Q ss_pred CcccccccCCCCCccEEEEe-c-C-------------CCcEEEEEccCC--ccccccccccCCceeEEeeecc------c
Q 021036 71 KKYPVPQNGSSNWFSILAVG-G-R-------------SGKVSLWRICVP--KCYSVEDCKVPTTAVLIGLFQA------H 127 (318)
Q Consensus 71 ~~~~v~~~~~s~~~~~l~~g-~-~-------------dg~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~------h 127 (318)
+...|..+.++..+.+.+.= + - --+|.+||+.++ +. ++.+.- .
T Consensus 85 ~lvsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~l--------------i~~y~~p~~~~~~ 150 (381)
T 3q6k_A 85 ELTSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPE--------------VVRYYFPTRLVEK 150 (381)
T ss_dssp SSSCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCE--------------EEEEECCGGGCCC
T ss_pred ceEEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCcee--------------EEEEECCHHhccc
Confidence 45567777776666655441 1 1 114778888886 43 232221 2
Q ss_pred cccEEEEEeeeecCC-CCCCCcEEEEEeCCCcEEEEECCCcceeeeeccccccccccee-eeee----cccceeEEEEee
Q 021036 128 NSWITSISLAVLSSD-SSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKE-VVTV----NTVPISVLSLIL 201 (318)
Q Consensus 128 ~~~v~~~~~~p~~~~-~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~v~~l~~~~ 201 (318)
...+..+++....+. ...++-..++=+..+.|.++|+.+++..........+- .... ...+ -...+..|+++
T Consensus 151 ~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd-~~~~~~i~G~~~~~~~Gi~gIaLs- 228 (381)
T 3q6k_A 151 PTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAE-RPTKFDYGGKEYEFKAGIFGITLG- 228 (381)
T ss_dssp GGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCC-SCEEEEETTEEEEECCCEEEEEEC-
T ss_pred CCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccc-cCcceEECCEEeEeccCceEEEec-
Confidence 356788888322111 01123223333457899999999987766553222111 0000 0011 12468888998
Q ss_pred ccCCCC----ceEEEEEeCCCcEEEeeec---cCCCee-eEeeeeeccc---CceeEEEEc-CCCCEEEEecCCCcEEEE
Q 021036 202 PVQSPR----LMLLAVGKGSGSFDLWKCD---ISCNKF-DKVGSYNAHD---QVVTGLAWA-FDGCCLYSCSQDNFVRSW 269 (318)
Q Consensus 202 ~~~~~~----~~~l~~~~~dg~i~vw~~~---~~~~~~-~~~~~~~~h~---~~v~~~~~~-~~~~~l~s~~~d~~v~iw 269 (318)
|+ ++.|.-....+. ++|.+. ++.... ..+.. .+.. ..-..++.+ .+|.++++--+...|..|
T Consensus 229 ----p~~~~~~~~LYf~plss~-~ly~V~T~~L~~~~~~~~v~~-~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w 302 (381)
T 3q6k_A 229 ----DRDSEGNRPAYYLAGSAI-KVYSVNTKELKQKGGKLNPEL-LGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCW 302 (381)
T ss_dssp ----CCCTTSCCEEEEEESSCS-EEEEEEHHHHSSTTCCCCCEE-EEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEE
T ss_pred ----CCcCCCCeEEEEEECCCC-cEEEEEHHHhhCcchhhceEE-eeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEE
Confidence 66 566666554443 444332 122111 11111 1222 233456776 578778888888999999
Q ss_pred EecC-----CceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 270 IFHG-----NSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 270 d~~~-----~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
+..+ +....+...+.. ..+.++++.++|.+-+.
T Consensus 303 ~~~~~~~~~~n~~~l~~d~~l-------------~~pd~~~i~~~g~Lwv~ 340 (381)
T 3q6k_A 303 NTQKMPLRMKNTDVVYTSSRF-------------VFGTDISVDSKGGLWFM 340 (381)
T ss_dssp ETTSCSBCGGGEEEEEECTTC-------------CSEEEEEECTTSCEEEE
T ss_pred eCCCCccccCceEEEEECCCc-------------cccCeEEECCCCeEEEE
Confidence 9876 222333333321 25677888777765443
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=84.72 E-value=29 Score=33.28 Aligned_cols=39 Identities=21% Similarity=0.116 Sum_probs=31.9
Q ss_pred cEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecc
Q 021036 130 WITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEA 175 (318)
Q Consensus 130 ~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 175 (318)
.+.++.. .++..++++-+.|+++|+|++.+++++.+...
T Consensus 237 ~~~~~~~-------~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 237 TIISMIF-------LSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp CEEEEEE-------ETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred eEEEEee-------cCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 4566666 56777999999999999999999998877543
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=81.31 E-value=6.4 Score=34.98 Aligned_cols=74 Identities=12% Similarity=-0.050 Sum_probs=48.6
Q ss_pred eeEEEEeeccCCCCceEEEEEe-CCCcEEEeeeccC----CCe---e--eEeeeeecccCceeEEEEcCCCCEEEEecCC
Q 021036 194 ISVLSLILPVQSPRLMLLAVGK-GSGSFDLWKCDIS----CNK---F--DKVGSYNAHDQVVTGLAWAFDGCCLYSCSQD 263 (318)
Q Consensus 194 v~~l~~~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~----~~~---~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 263 (318)
...+.++ |||++++.++ -+.++.+++++.- ..+ + ..+.+.+. .-.....+|+++|.-..+.-.|
T Consensus 325 PHGv~vs-----PDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~-GlGPlHt~Fd~~G~aYTtlfid 398 (638)
T 3sbq_A 325 PHGCNTS-----SDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL-GLGPLHTTFDGRGNAYTTLFID 398 (638)
T ss_dssp CCCEEEC-----TTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC-CSCEEEEEECSSSEEEEEETTT
T ss_pred CcceeeC-----CCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC-CCcccEEEECCCCceEeeeeec
Confidence 3566777 9999888776 5788999965410 011 0 01222222 2345678999999656666789
Q ss_pred CcEEEEEecC
Q 021036 264 NFVRSWIFHG 273 (318)
Q Consensus 264 ~~v~iwd~~~ 273 (318)
..|..|++..
T Consensus 399 SqvvkWni~~ 408 (638)
T 3sbq_A 399 SQVVKWNMEE 408 (638)
T ss_dssp TEEEEEEHHH
T ss_pred ceEEEEeccH
Confidence 9999999864
|
| >3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=80.65 E-value=7.1 Score=35.01 Aligned_cols=57 Identities=14% Similarity=0.109 Sum_probs=38.5
Q ss_pred eEEEEcCCCCEEEEecCC------------CcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEE
Q 021036 246 TGLAWAFDGCCLYSCSQD------------NFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVV 313 (318)
Q Consensus 246 ~~~~~~~~~~~l~s~~~d------------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l 313 (318)
=.|+|+|.|.++++-..+ ..+.+.+..++++..+...+... .+++++|+||++.|
T Consensus 479 DNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~ga-------------E~TG~~fspDg~tl 545 (592)
T 3zwu_A 479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGC-------------EVTGISFSPDQKTL 545 (592)
T ss_dssp EEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTC-------------EEEEEEECTTSSEE
T ss_pred cceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCc-------------cCcCeeECCCCCEE
Confidence 468999999866654322 23444455567777666555443 88999999999876
Q ss_pred EE
Q 021036 314 AM 315 (318)
Q Consensus 314 ~~ 315 (318)
.+
T Consensus 546 fv 547 (592)
T 3zwu_A 546 FV 547 (592)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=80.51 E-value=11 Score=32.78 Aligned_cols=54 Identities=7% Similarity=-0.101 Sum_probs=32.1
Q ss_pred ceeEEEEeeccCCCCce-EEEEEeCCCcEEEeeeccCCCe-eeEeeeee---------cccCceeEEEEcCC
Q 021036 193 PISVLSLILPVQSPRLM-LLAVGKGSGSFDLWKCDISCNK-FDKVGSYN---------AHDQVVTGLAWAFD 253 (318)
Q Consensus 193 ~v~~l~~~~~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~-~~~~~~~~---------~h~~~v~~~~~~~~ 253 (318)
....|+|. |+|. .++++...|.|++++ ..... ...+..+. ........|+|+|+
T Consensus 15 ~P~~~a~~-----pdG~~rl~V~er~G~i~~~~--~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 15 QPVGALHS-----GDGSQRLFILEKEGYVKILT--PEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SEEEEECC-----SSSSCCEEEEETTTEEEEEC--TTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CceEEEEC-----CCCCeEEEEEeCCceEEEEe--CCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 34678888 8985 455667789999984 22211 01111111 11356788999996
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 318 | ||||
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-09 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-05 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-08 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-05 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-04 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-06 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-05 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 0.001 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-06 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-04 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 5e-04 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 4e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 4e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-04 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 0.003 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 55.1 bits (131), Expect = 3e-09
Identities = 36/198 (18%), Positives = 59/198 (29%), Gaps = 42/198 (21%)
Query: 72 KYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWI 131
V + + G LW + C F H S I
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT--------------FTGHESDI 229
Query: 132 TSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNT 191
+I + + TGS D + R++D + +
Sbjct: 230 NAICF---FPNGN----AFATGSDDATCRLFDLRADQELMTYSHDN------------II 270
Query: 192 VPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWA 251
I+ +S S LL G + ++W K D+ G HD V+ L
Sbjct: 271 CGITSVSF-----SKSGRLLLAGYDDFNCNVWDAL----KADRAGVLAGHDNRVSCLGVT 321
Query: 252 FDGCCLYSCSQDNFVRSW 269
DG + + S D+F++ W
Sbjct: 322 DDGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 44.0 bits (102), Expect = 1e-05
Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 21/83 (25%)
Query: 81 SNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLS 140
S +L G ++W A G+ H++ ++ + + +
Sbjct: 279 SKSGRLLLAGYDDFNCNVWDA--------------LKADRAGVLAGHDNRVSCLGV---T 321
Query: 141 SDSSNPQVLLVTGSSDGSVRIWD 163
D + TGS D ++IW+
Sbjct: 322 DDGM----AVATGSWDSFLKIWN 340
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 51.3 bits (121), Expect = 4e-08
Identities = 27/209 (12%), Positives = 63/209 (30%), Gaps = 26/209 (12%)
Query: 62 WSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKC-YSVEDCKVPTTAVL 120
V + + V + +++A V +W + +C + + + +
Sbjct: 133 GYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECIS 192
Query: 121 IGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPF 180
+++S + S P L++GS D ++++WD + H
Sbjct: 193 WAPESSYSSISEATGSETKKSGKPGP--FLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWV 250
Query: 181 SLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNA 240
+ + + + +W + + NA
Sbjct: 251 RGV-------------------LFHSGGKFILSCADDKTLRVW----DYKNKRCMKTLNA 287
Query: 241 HDQVVTGLAWAFDGCCLYSCSQDNFVRSW 269
H+ VT L + + + S D V+ W
Sbjct: 288 HEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 42.8 bits (99), Expect = 3e-05
Identities = 25/175 (14%), Positives = 52/175 (29%), Gaps = 26/175 (14%)
Query: 124 FQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLL 183
H S +T + S ++V+ S D ++++WD + +++ + H +
Sbjct: 13 LSGHRSPVTRVIF---HPVFS----VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDI 65
Query: 184 KEVVTVNTVPISVLSLILPVQSPRLMLLAVGKG-------------------SGSFDLWK 224
+ + + + + + S S D
Sbjct: 66 SFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTI 125
Query: 225 CDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQV 279
V ++ H + V + DG + SCS D VR W+
Sbjct: 126 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAE 180
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 39.3 bits (90), Expect = 3e-04
Identities = 14/102 (13%), Positives = 30/102 (29%), Gaps = 21/102 (20%)
Query: 62 WSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLI 121
++ L V + + + +W +
Sbjct: 237 GMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY--------------KNKRCM 282
Query: 122 GLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWD 163
AH ++TS+ + +VTGS D +V++W+
Sbjct: 283 KTLNAHEHFVTSLDF---HKTAP----YVVTGSVDQTVKVWE 317
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 46.8 bits (109), Expect = 2e-06
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 205 SPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDN 264
+ +A+ + ++ + S NK+ +V H+ VTG+ WA D + +C D
Sbjct: 16 NKDRTQIAICPNNHEVHIY--EKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDR 73
Query: 265 FVRSWIFH 272
W
Sbjct: 74 NAYVWTLK 81
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 43.3 bits (100), Expect = 2e-05
Identities = 31/219 (14%), Positives = 65/219 (29%), Gaps = 36/219 (16%)
Query: 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSS 144
+ +A+ + +V ++ K V + + HN +T + + DS+
Sbjct: 20 TQIAICPNNHEVHIYEKSGNKW------------VQVHELKEHNGQVTGVD---WAPDSN 64
Query: 145 NPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQ 204
+VT +D + +W + + + + +
Sbjct: 65 ----RIVTCGTDRNAYVWTLKGRTWKPTLVILRINR-----------------AARCVRW 103
Query: 205 SPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDN 264
+P AVG GS + + + + V L W + L + S D
Sbjct: 104 APNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF 163
Query: 265 FVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLG 303
R + + + + PT +L S G
Sbjct: 164 KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG 202
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 37.9 bits (86), Expect = 0.001
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 116 TTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWD 163
+ A GL H + ++ IS+ S T DG + IWD
Sbjct: 313 SAAAGAGLDSLHKNSVSQISV---LSGGKAKCSQFCTTGMDGGMSIWD 357
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.3 bits (108), Expect = 2e-06
Identities = 31/196 (15%), Positives = 54/196 (27%), Gaps = 31/196 (15%)
Query: 80 SSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVL 139
S +A G V +W D + + H + S+
Sbjct: 213 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENES-------GTGHKDSVYSVVF--- 262
Query: 140 SSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSL 199
+ D +V+GS D SV++W+ + ++ VT VLS+
Sbjct: 263 TRDGQ----SVVSGSLDRSVKLWNLQNANNKSDSKTPNSG----TCEVTYIGHKDFVLSV 314
Query: 200 ILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAF------D 253
+ + G W + + H V +A A +
Sbjct: 315 AT---TQNDEYILSGSKDRGVLFW----DKKSGNPLLMLQGHRNSVISVAVANGSSLGPE 367
Query: 254 GCCLYSCSQDNFVRSW 269
+ S D R W
Sbjct: 368 YNVFATGSGDCKARIW 383
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.3 bits (100), Expect = 2e-05
Identities = 30/208 (14%), Positives = 59/208 (28%), Gaps = 34/208 (16%)
Query: 124 FQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLL 183
+AH++ I S+S ++ V+ S DG +++WD K +
Sbjct: 10 GKAHDADIFSVSA------CNS---FTVSCSGDGYLKVWDN------KLLDNENPKDKSY 54
Query: 184 KEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCD------ISCNKFDKVGS 237
V + + + + + L L+A SG ++ + +
Sbjct: 55 SHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLD 114
Query: 238 YNAHDQVVTGLAWAFDGCC-----LYSCSQDNFVRSWIFHGNSLSQVSIP------TNTP 286
+ L W L + W FH + S+
Sbjct: 115 SDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQ 174
Query: 287 GLQSCTDLPDAFVSCLGMAVSPGNLVVA 314
G P F + + +S L+
Sbjct: 175 GTVESPMTPSQFATSV--DISERGLIAT 200
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.6 bits (93), Expect = 2e-04
Identities = 21/198 (10%), Positives = 46/198 (23%), Gaps = 19/198 (9%)
Query: 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSS 144
S G + +W + D + P H S + + + +
Sbjct: 25 SFTVSCSGDGYLKVWDN------KLLDNENPKDKSYSHF--VHKSGLHHVDVLQAIERDA 76
Query: 145 NPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKE------VVTVNTVPISVLS 198
L+ T S G + + ++ K + + +LS
Sbjct: 77 FELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS 136
Query: 199 LILPVQSP----RLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDG 254
L + + + V S Q T + + G
Sbjct: 137 HRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG 196
Query: 255 CCLYSCSQDNFVRSWIFH 272
+ + + V+
Sbjct: 197 -LIATGFNNGTVQISELS 213
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.1 bits (89), Expect = 5e-04
Identities = 24/196 (12%), Positives = 55/196 (28%), Gaps = 13/196 (6%)
Query: 78 NGSSNWFSILAVGGRSGKVSLWRICVPKC----YSVEDCKVPTTAVLIGLFQAHNSWITS 133
+ L G +W+ ++ + + + TS
Sbjct: 130 SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATS 189
Query: 134 ISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVP 193
+ + + + L+ TG ++G+V+I + + E+ +
Sbjct: 190 VDI--------SERGLIATGFNNGTVQISELSTLRPLYNFESQH-SMINNSNSIRSVKFS 240
Query: 194 ISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFD 253
L + S + + + + + + AH V L++
Sbjct: 241 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS 300
Query: 254 GCCLYSCSQDNFVRSW 269
G L S D +R W
Sbjct: 301 GETLCSAGWDGKLRFW 316
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.1 bits (97), Expect = 4e-05
Identities = 13/82 (15%), Positives = 29/82 (35%), Gaps = 14/82 (17%)
Query: 82 NWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSS 141
+ G GK+ +W + + D + P + + H+ + +
Sbjct: 226 FDNKRIVSGAYDGKIKVWDLV-----AALDPRAPAGTLCLRTLVEHSGRVFRLQF----- 275
Query: 142 DSSNPQVLLVTGSSDGSVRIWD 163
+ +V+ S D ++ IWD
Sbjct: 276 ---DEF-QIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.1 bits (89), Expect = 4e-04
Identities = 23/126 (18%), Positives = 38/126 (30%), Gaps = 28/126 (22%)
Query: 149 LLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRL 208
L+V+GSSD ++R+WD + E H
Sbjct: 190 LVVSGSSDNTIRLWDIECGACLRVLEGHEELV---------------------RCIRFDN 228
Query: 209 MLLAVGKGSGSFDLWKCDISCNKFDKVG-----SYNAHDQVVTGLAWAFDGCCLYSCSQD 263
+ G G +W + + G + H V L + D + S S D
Sbjct: 229 KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHD 286
Query: 264 NFVRSW 269
+ + W
Sbjct: 287 DTILIW 292
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.6 bits (93), Expect = 2e-04
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 120 LIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWD 163
++ + QA +I+ I + S LL+ S DGS+ ++
Sbjct: 3 IVQIEQAPKDYISDIKI---IPSKS----LLLITSWDGSLTVYK 39
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 36.9 bits (84), Expect = 0.003
Identities = 17/155 (10%), Positives = 37/155 (23%), Gaps = 29/155 (18%)
Query: 122 GLFQAHNSWITSISLA------VLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEA 175
G+ + SW + + D N + VT G + + DG +++ K +
Sbjct: 3 GMPEMRESWKVLVKPEDRPKKQLNDLDLPN--LFSVTLRDAGQIALVDGDSKKIVKVIDT 60
Query: 176 HCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCD-ISCNKFDK 234
S L V D+ K +
Sbjct: 61 GYAVHIS--------------------RMSASGRYLLVIGRDARIDMIDLWAKEPTKVAE 100
Query: 235 VGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSW 269
+ V + ++ + + +
Sbjct: 101 IKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAI 135
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 318 | |||
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.98 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.98 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.97 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.97 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.96 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.96 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.96 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.96 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.95 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.95 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.95 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.95 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.94 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.94 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.93 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.93 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.93 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.92 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.91 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.91 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.9 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.89 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.89 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.88 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.86 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.84 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.8 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.8 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.79 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.75 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.7 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.69 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.68 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.68 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.68 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.67 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.56 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.49 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.45 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.41 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.31 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.28 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.26 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.18 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.11 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.0 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.93 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.89 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.84 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.74 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.71 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.67 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.67 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.63 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.57 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.57 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.57 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.52 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.48 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.42 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.34 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.32 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.25 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.21 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.71 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.61 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.54 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.54 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 96.93 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 96.67 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 96.53 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 95.84 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 95.68 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 95.56 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 94.36 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 93.04 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 93.03 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 93.01 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 92.34 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 92.24 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 92.14 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 91.22 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 91.16 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 90.52 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 90.48 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 88.88 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 88.88 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 87.42 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 86.57 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 86.51 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 86.22 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 85.06 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 84.37 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 83.48 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 82.04 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 80.05 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.8e-32 Score=225.31 Aligned_cols=241 Identities=15% Similarity=0.225 Sum_probs=193.7
Q ss_pred ccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeeccccc------------------------CCCCc
Q 021036 17 THPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLR------------------------LSSKK 72 (318)
Q Consensus 17 ~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~------------------------~~~~~ 72 (318)
...++|||.|++|++||+++++.+..+.. |... +.+++|+|++. +..|.
T Consensus 29 ~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~----h~~~---V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (317)
T d1vyhc1 29 FSVMVSASEDATIKVWDYETGDFERTLKG----HTDS---VQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHD 101 (317)
T ss_dssp SSEEEEEESSSCEEEEETTTCCCCEEECC----CSSC---EEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCS
T ss_pred CCEEEEEeCCCeEEEEECCCCCEEEEEeC----CCCc---EEEEeeeccccccccccccccccccccccccccccccccc
Confidence 45689999999999999999988776653 3333 34467766543 34577
Q ss_pred ccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEE
Q 021036 73 YPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVT 152 (318)
Q Consensus 73 ~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s 152 (318)
..+.++.++++++.+++++.|+.+++|+++++ +.+..+.+|...+.+++| ++++.+|++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~-------~~~~~~l~~ 160 (317)
T d1vyhc1 102 HNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG--------------YCVKTFTGHREWVRMVRP-------NQDGTLIAS 160 (317)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTC--------------CEEEEEECCSSCEEEEEE-------CTTSSEEEE
T ss_pred ccceeeeccCCCceEEeeccCcceeEeecccc--------------eeeeEEccCCCcceeeec-------ccCCCEEEE
Confidence 78889999999999999999999999999984 456778899999999999 899999999
Q ss_pred EeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeecc---------------CCCCceEEEEEeCC
Q 021036 153 GSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPV---------------QSPRLMLLAVGKGS 217 (318)
Q Consensus 153 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---------------~~~~~~~l~~~~~d 217 (318)
++.|+.|++|++.+++....+..+.. .+.++.+++.. ....+..+++++.|
T Consensus 161 ~~~d~~v~~~~~~~~~~~~~~~~~~~--------------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 226 (317)
T d1vyhc1 161 CSNDQTVRVWVVATKECKAELREHRH--------------VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD 226 (317)
T ss_dssp EETTSCEEEEETTTCCEEEEECCCSS--------------CEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETT
T ss_pred EeCCCeEEEEeeccceeeEEEecCCC--------------CceEEEEeeccccceeeccccceeeeeccCCceeEeccCC
Confidence 99999999999999888777665543 34444443110 01456789999999
Q ss_pred CcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCc
Q 021036 218 GSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDA 297 (318)
Q Consensus 218 g~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h 297 (318)
+.|++| +.++++ ++.++.+|...|.+++|+|++++|++++.||.|++||+.+++... .+.+|
T Consensus 227 ~~i~~~--~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--------------~~~~h 288 (317)
T d1vyhc1 227 KTIKMW--DVSTGM--CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK--------------TLNAH 288 (317)
T ss_dssp SEEEEE--ETTTTE--EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCE--------------EEECC
T ss_pred CEEEEE--ECCCCc--EEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEE--------------EEcCC
Confidence 999999 566766 778889999999999999999999999999999999998766443 22335
Q ss_pred ceeeeEEEEcCCCcEEEEEe
Q 021036 298 FVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 298 ~~~v~~v~~sp~~~~l~~~~ 317 (318)
.+.|++++|+|++++|++|.
T Consensus 289 ~~~V~~~~~s~~~~~l~s~s 308 (317)
T d1vyhc1 289 EHFVTSLDFHKTAPYVVTGS 308 (317)
T ss_dssp SSCEEEEEECSSSSCEEEEE
T ss_pred CCCEEEEEEcCCCCEEEEEe
Confidence 66999999999999999974
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.9e-31 Score=224.08 Aligned_cols=236 Identities=19% Similarity=0.167 Sum_probs=173.3
Q ss_pred ccceEEeeCCCceeEeecCCCCCCCceecc-hhccccccccceeeeeccccc--------------------------CC
Q 021036 17 THPTVAASKSKGNSITKIPSNCCLPLITAD-QYASRSAMLHSLAVAWSPVLR--------------------------LS 69 (318)
Q Consensus 17 ~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~w~p~~~--------------------------~~ 69 (318)
...+++|+ |+.|+|||+.+......+... ...|... +.+++|+|++. +.
T Consensus 63 g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~---I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 138 (337)
T d1gxra_ 63 TRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNY---IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELT 138 (337)
T ss_dssp SSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSB---EEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEE
T ss_pred CCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCc---EEEEEEcCCCCEEEEeecccccccccccccccccccccc
Confidence 34467766 899999999886554443321 1123333 34466666552 11
Q ss_pred CCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcE
Q 021036 70 SKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVL 149 (318)
Q Consensus 70 ~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~ 149 (318)
.|...+.++.+++++.++++++.|+.|++|++.+ .+......+|...|.+++| ++++..
T Consensus 139 ~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~--------------~~~~~~~~~~~~~v~~l~~-------s~~~~~ 197 (337)
T d1gxra_ 139 SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN--------------QTLVRQFQGHTDGASCIDI-------SNDGTK 197 (337)
T ss_dssp CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--------------TEEEEEECCCSSCEEEEEE-------CTTSSE
T ss_pred cccccccccccccccccccccccccccccccccc--------------ccccccccccccccccccc-------cccccc
Confidence 2333444555555555555555555555555554 3455667789999999999 899999
Q ss_pred EEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCC
Q 021036 150 LVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISC 229 (318)
Q Consensus 150 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~ 229 (318)
+++++.|+.+++||+++++.+..+. +..+|.+++|+ |++++|++|+.|+.|++|+ .+.
T Consensus 198 ~~~~~~d~~v~i~d~~~~~~~~~~~---------------~~~~i~~l~~~-----~~~~~l~~~~~d~~i~i~d--~~~ 255 (337)
T d1gxra_ 198 LWTGGLDNTVRSWDLREGRQLQQHD---------------FTSQIFSLGYC-----PTGEWLAVGMESSNVEVLH--VNK 255 (337)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEE---------------CSSCEEEEEEC-----TTSSEEEEEETTSCEEEEE--TTS
T ss_pred cccccccccccccccccceeecccc---------------cccceEEEEEc-----ccccccceecccccccccc--ccc
Confidence 9999999999999999887766543 34489999999 9999999999999999994 445
Q ss_pred CeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCC
Q 021036 230 NKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPG 309 (318)
Q Consensus 230 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 309 (318)
.. ......|...|++++|+|++++|++++.||.|++||+.+++...... |...|.+++|+|+
T Consensus 256 ~~---~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~---------------~~~~v~~~~~s~d 317 (337)
T d1gxra_ 256 PD---KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK---------------ESSSVLSCDISVD 317 (337)
T ss_dssp SC---EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---------------CSSCEEEEEECTT
T ss_pred cc---cccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc---------------CCCCEEEEEEeCC
Confidence 44 22456799999999999999999999999999999998876654332 3348999999999
Q ss_pred CcEEEEEe
Q 021036 310 NLVVAMVQ 317 (318)
Q Consensus 310 ~~~l~~~~ 317 (318)
+++|++|.
T Consensus 318 ~~~l~t~s 325 (337)
T d1gxra_ 318 DKYIVTGS 325 (337)
T ss_dssp SCEEEEEE
T ss_pred CCEEEEEe
Confidence 99999874
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=3.9e-31 Score=219.82 Aligned_cols=220 Identities=12% Similarity=0.098 Sum_probs=174.6
Q ss_pred eCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEEEEccC
Q 021036 24 SKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICV 103 (318)
Q Consensus 24 s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~ 103 (318)
..++.+.+||+.+.+....+.. |... +++++|+|++ ++|++|+.||.|+|||+.+
T Consensus 35 ~~~~~v~i~~~~~~~~~~~~~~----H~~~---v~~~~~sp~g------------------~~latg~~dg~i~iwd~~~ 89 (311)
T d1nr0a1 35 CNGTSVYTVPVGSLTDTEIYTE----HSHQ---TTVAKTSPSG------------------YYCASGDVHGNVRIWDTTQ 89 (311)
T ss_dssp EETTEEEEEETTCSSCCEEECC----CSSC---EEEEEECTTS------------------SEEEEEETTSEEEEEESSS
T ss_pred EeCCEEEEEECCCCceeEEEcC----CCCC---EEEEEEeCCC------------------CeEeccccCceEeeeeeec
Confidence 3566789999987766554432 3333 4456666666 9999999999999999998
Q ss_pred CccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeC--CCcEEEEECCCcceeeeecccccccc
Q 021036 104 PKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSS--DGSVRIWDGYIQELQKSAEAHCVPFS 181 (318)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~--d~~v~iwd~~~~~~~~~~~~~~~~~~ 181 (318)
++. .....+..|..+|.+++| ++++++|++++. +..+++|++.+++....+..|.
T Consensus 90 ~~~------------~~~~~~~~~~~~v~~v~~-------s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~---- 146 (311)
T d1nr0a1 90 TTH------------ILKTTIPVFSGPVKDISW-------DSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQA---- 146 (311)
T ss_dssp TTC------------CEEEEEECSSSCEEEEEE-------CTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCS----
T ss_pred ccc------------ccccccccccCccccccc-------cccccccccccccccccccccccccccccccccccc----
Confidence 653 234567889999999999 899999999986 4669999999888776665544
Q ss_pred cceeeeeecccceeEEEEeeccCCCCce-EEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEe
Q 021036 182 LLKEVVTVNTVPISVLSLILPVQSPRLM-LLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSC 260 (318)
Q Consensus 182 ~~~~~~~~~~~~v~~l~~~~~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 260 (318)
..|++++|+ |+++ .|++|+.|+.|++| +.++.+ ....+.+|...|+++.|+|++++|+++
T Consensus 147 ----------~~v~~v~~~-----~~~~~~l~sgs~d~~i~i~--d~~~~~--~~~~~~~~~~~i~~v~~~p~~~~l~~~ 207 (311)
T d1nr0a1 147 ----------RAMNSVDFK-----PSRPFRIISGSDDNTVAIF--EGPPFK--FKSTFGEHTKFVHSVRYNPDGSLFAST 207 (311)
T ss_dssp ----------SCEEEEEEC-----SSSSCEEEEEETTSCEEEE--ETTTBE--EEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred ----------ccccccccc-----ccceeeecccccccccccc--cccccc--cccccccccccccccccCccccccccc
Confidence 489999999 8877 58889999999999 566665 666788899999999999999999999
Q ss_pred cCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 261 SQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 261 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
+.|+.|++||+..+.......... ....+|.+.|++++|+|++++|++|.
T Consensus 208 ~~d~~v~~~d~~~~~~~~~~~~~~-------~~~~~h~~~V~~~~~s~~~~~l~tgs 257 (311)
T d1nr0a1 208 GGDGTIVLYNGVDGTKTGVFEDDS-------LKNVAHSGSVFGLTWSPDGTKIASAS 257 (311)
T ss_dssp ETTSCEEEEETTTCCEEEECBCTT-------SSSCSSSSCEEEEEECTTSSEEEEEE
T ss_pred cccccccccccccccccccccccc-------cccccccccccccccCCCCCEEEEEe
Confidence 999999999998765543221111 23456888999999999999999974
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=6.1e-32 Score=230.20 Aligned_cols=239 Identities=11% Similarity=0.013 Sum_probs=178.6
Q ss_pred eccCcCCCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccE
Q 021036 7 FTSNKMKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSI 86 (318)
Q Consensus 7 ~~~~~~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~ 86 (318)
.+...+.+ +...+++|+.|+.|++||+.+++...... +.+|..+|.+++|+|++++
T Consensus 10 It~~~~s~-dg~~la~~~~~~~i~iw~~~~~~~~~~~~-----------------------l~gH~~~V~~l~fsp~~~~ 65 (371)
T d1k8kc_ 10 ISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHE-----------------------LKEHNGQVTGVDWAPDSNR 65 (371)
T ss_dssp CCEEEECT-TSSEEEEECSSSEEEEEEEETTEEEEEEE-----------------------EECCSSCEEEEEEETTTTE
T ss_pred eEEEEECC-CCCEEEEEeCCCEEEEEECCCCCEEEEEE-----------------------ecCCCCCEEEEEECCCCCE
Confidence 34444443 45677899999999999997765322111 2234444444444444599
Q ss_pred EEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCC
Q 021036 87 LAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYI 166 (318)
Q Consensus 87 l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 166 (318)
|++|+.|++|+|||+.+++ ......+.+|...|++++| +|+++.|++++.|+++++|++..
T Consensus 66 l~s~s~D~~i~vWd~~~~~------------~~~~~~~~~~~~~v~~i~~-------~p~~~~l~~~s~d~~i~i~~~~~ 126 (371)
T d1k8kc_ 66 IVTCGTDRNAYVWTLKGRT------------WKPTLVILRINRAARCVRW-------APNEKKFAVGSGSRVISICYFEQ 126 (371)
T ss_dssp EEEEETTSCEEEEEEETTE------------EEEEEECCCCSSCEEEEEE-------CTTSSEEEEEETTSSEEEEEEET
T ss_pred EEEEECCCeEEEEeecccc------------ccccccccccccccccccc-------ccccccceeecccCcceeeeeec
Confidence 9999999999999998765 3445566789999999999 89999999999999999999876
Q ss_pred cceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCC--------------ee
Q 021036 167 QELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCN--------------KF 232 (318)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~--------------~~ 232 (318)
......... ....+...|.+++|+ |++.+|++|+.|+.|++|+...... ..
T Consensus 127 ~~~~~~~~~----------~~~~~~~~v~~v~~~-----p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~ 191 (371)
T d1k8kc_ 127 ENDWWVCKH----------IKKPIRSTVLSLDWH-----PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFG 191 (371)
T ss_dssp TTTEEEEEE----------ECTTCCSCEEEEEEC-----TTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTT
T ss_pred ccccccccc----------ccccccccccccccc-----ccccceeccccCcEEEEEeeccCccccccccccccccccce
Confidence 654332221 112345689999999 9999999999999999997532211 01
Q ss_pred eEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcE
Q 021036 233 DKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLV 312 (318)
Q Consensus 233 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~ 312 (318)
..+....+|...|.+++|+|++++|++++.|+.|++||+..+...... ..|..+|.+++|+||+++
T Consensus 192 ~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~--------------~~~~~~v~s~~fs~d~~~ 257 (371)
T d1k8kc_ 192 ELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL--------------ASETLPLLAVTFITESSL 257 (371)
T ss_dssp CEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE--------------ECSSCCEEEEEEEETTEE
T ss_pred eeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeee--------------ecccccceeeeecCCCCE
Confidence 244556778999999999999999999999999999999876654321 124458999999999999
Q ss_pred EEEEe
Q 021036 313 VAMVQ 317 (318)
Q Consensus 313 l~~~~ 317 (318)
|++|.
T Consensus 258 la~g~ 262 (371)
T d1k8kc_ 258 VAAGH 262 (371)
T ss_dssp EEEET
T ss_pred EEEEc
Confidence 99873
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.98 E-value=2.6e-30 Score=214.79 Aligned_cols=196 Identities=17% Similarity=0.220 Sum_probs=155.7
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecC--C
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGR--S 93 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~--d 93 (318)
+.+.+++|+.|++|++||+.+++......... |... +.+++|+|++ ++|++++. +
T Consensus 69 ~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~--~~~~---v~~v~~s~d~------------------~~l~~~~~~~~ 125 (311)
T d1nr0a1 69 SGYYCASGDVHGNVRIWDTTQTTHILKTTIPV--FSGP---VKDISWDSES------------------KRIAAVGEGRE 125 (311)
T ss_dssp TSSEEEEEETTSEEEEEESSSTTCCEEEEEEC--SSSC---EEEEEECTTS------------------CEEEEEECCSS
T ss_pred CCCeEeccccCceEeeeeeecccccccccccc--ccCc---cccccccccc------------------ccccccccccc
Confidence 45678999999999999999877644332211 3332 3446777666 88888875 4
Q ss_pred CcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCc-EEEEEeCCCcEEEEECCCcceeee
Q 021036 94 GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQV-LLVTGSSDGSVRIWDGYIQELQKS 172 (318)
Q Consensus 94 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~ 172 (318)
..+++|++++++ ....+.+|...|++++| +++++ .|++|+.|+.|++||+++++....
T Consensus 126 ~~~~v~~~~~~~--------------~~~~l~~h~~~v~~v~~-------~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~ 184 (311)
T d1nr0a1 126 RFGHVFLFDTGT--------------SNGNLTGQARAMNSVDF-------KPSRPFRIISGSDDNTVAIFEGPPFKFKST 184 (311)
T ss_dssp CSEEEEETTTCC--------------BCBCCCCCSSCEEEEEE-------CSSSSCEEEEEETTSCEEEEETTTBEEEEE
T ss_pred cccccccccccc--------------ccccccccccccccccc-------cccceeeecccccccccccccccccccccc
Confidence 569999999854 45678899999999999 77776 588899999999999999887776
Q ss_pred ecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeee-------eecccCce
Q 021036 173 AEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGS-------YNAHDQVV 245 (318)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~-------~~~h~~~v 245 (318)
+..+. .+|+++.++ |+++++++++.|+.|++|+ .+... .+.. ..+|...|
T Consensus 185 ~~~~~--------------~~i~~v~~~-----p~~~~l~~~~~d~~v~~~d--~~~~~--~~~~~~~~~~~~~~h~~~V 241 (311)
T d1nr0a1 185 FGEHT--------------KFVHSVRYN-----PDGSLFASTGGDGTIVLYN--GVDGT--KTGVFEDDSLKNVAHSGSV 241 (311)
T ss_dssp ECCCS--------------SCEEEEEEC-----TTSSEEEEEETTSCEEEEE--TTTCC--EEEECBCTTSSSCSSSSCE
T ss_pred ccccc--------------ccccccccC-----ccccccccccccccccccc--ccccc--ccccccccccccccccccc
Confidence 65544 489999999 9999999999999999995 44443 2222 24688999
Q ss_pred eEEEEcCCCCEEEEecCCCcEEEEEecCCceee
Q 021036 246 TGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQ 278 (318)
Q Consensus 246 ~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~ 278 (318)
++++|+|++++|++|+.||+|+|||++++++..
T Consensus 242 ~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~ 274 (311)
T d1nr0a1 242 FGLTWSPDGTKIASASADKTIKIWNVATLKVEK 274 (311)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred cccccCCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 999999999999999999999999999887654
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.98 E-value=1.5e-30 Score=221.58 Aligned_cols=209 Identities=15% Similarity=0.110 Sum_probs=162.8
Q ss_pred ccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEE
Q 021036 73 YPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVT 152 (318)
Q Consensus 73 ~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s 152 (318)
.||+|++|++++++||+|+.||.|+||+.++++ ...+..+++|.++|++++| +|++++|++
T Consensus 8 ~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~------------~~~~~~l~gH~~~V~~l~f-------sp~~~~l~s 68 (371)
T d1k8kc_ 8 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK------------WVQVHELKEHNGQVTGVDW-------APDSNRIVT 68 (371)
T ss_dssp SCCCEEEECTTSSEEEEECSSSEEEEEEEETTE------------EEEEEEEECCSSCEEEEEE-------ETTTTEEEE
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEECCCCC------------EEEEEEecCCCCCEEEEEE-------CCCCCEEEE
Confidence 355666666666999999999999999998765 3467788999999999999 889999999
Q ss_pred EeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCee
Q 021036 153 GSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKF 232 (318)
Q Consensus 153 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~ 232 (318)
|+.|++|++||+.++.....+.. ..+...|.+++|+ |+++.|++|+.|+.|++|+++......
T Consensus 69 ~s~D~~i~vWd~~~~~~~~~~~~------------~~~~~~v~~i~~~-----p~~~~l~~~s~d~~i~i~~~~~~~~~~ 131 (371)
T d1k8kc_ 69 CGTDRNAYVWTLKGRTWKPTLVI------------LRINRAARCVRWA-----PNEKKFAVGSGSRVISICYFEQENDWW 131 (371)
T ss_dssp EETTSCEEEEEEETTEEEEEEEC------------CCCSSCEEEEEEC-----TTSSEEEEEETTSSEEEEEEETTTTEE
T ss_pred EECCCeEEEEeeccccccccccc------------ccccccccccccc-----cccccceeecccCcceeeeeecccccc
Confidence 99999999999987654433221 1244589999999 999999999999999999887666554
Q ss_pred eEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecC-CCCCCc---cccccCCCcceeeeEEEEcC
Q 021036 233 DKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIP-TNTPGL---QSCTDLPDAFVSCLGMAVSP 308 (318)
Q Consensus 233 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~-~~~~~~---~~~~~~~~h~~~v~~v~~sp 308 (318)
........|...|.+++|+|++++|++|+.|++|++||+........... ...... .......+|...|.+++|+|
T Consensus 132 ~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 211 (371)
T d1k8kc_ 132 VCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA 211 (371)
T ss_dssp EEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS
T ss_pred cccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeec
Confidence 44455667899999999999999999999999999999876443221111 000000 01233457888999999999
Q ss_pred CCcEEEEEe
Q 021036 309 GNLVVAMVQ 317 (318)
Q Consensus 309 ~~~~l~~~~ 317 (318)
++++|+++.
T Consensus 212 ~g~~l~s~~ 220 (371)
T d1k8kc_ 212 NGSRVAWVS 220 (371)
T ss_dssp SSSEEEEEE
T ss_pred ccccccccc
Confidence 999999874
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=8e-30 Score=213.11 Aligned_cols=235 Identities=18% Similarity=0.165 Sum_probs=177.5
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCc
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGK 95 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~ 95 (318)
+...+++|+.||+|++||+.+++.+..+.. |... +.+++|+|++ +++++|+.|+.
T Consensus 66 ~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~----~~~~---v~~v~~~~~~------------------~~l~~~~~d~~ 120 (340)
T d1tbga_ 66 DSRLLVSASQDGKLIIWDSYTTNKVHAIPL----RSSW---VMTCAYAPSG------------------NYVACGGLDNI 120 (340)
T ss_dssp TSSEEEEEETTTEEEEEETTTTEEEEEEEC----SCSC---EEEEEECTTS------------------SEEEEEETTCC
T ss_pred CCCEEEEEECCCceeeeecccceeEEEEec----cccc---EEeeEeeccc------------------eeeeeecccce
Confidence 455689999999999999998876555432 2332 3446666666 99999999999
Q ss_pred EEEEEccCCccccccc-------------------------------cccCCceeEEeeeccccccEEEEEeeeecCCCC
Q 021036 96 VSLWRICVPKCYSVED-------------------------------CKVPTTAVLIGLFQAHNSWITSISLAVLSSDSS 144 (318)
Q Consensus 96 i~iw~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 144 (318)
+++|+........... ...............+...+....+ .
T Consensus 121 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 193 (340)
T d1tbga_ 121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSL-------A 193 (340)
T ss_dssp EEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEE-------C
T ss_pred eecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeecc-------c
Confidence 9999987543211100 0000111122233345667788888 7
Q ss_pred CCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEee
Q 021036 145 NPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWK 224 (318)
Q Consensus 145 ~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~ 224 (318)
+.+.++++++.|+.|++||+++++....+..|. .+|++++|+ |++++|++|+.||.|++|
T Consensus 194 ~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~--------------~~i~~v~~~-----p~~~~l~s~s~d~~i~~~- 253 (340)
T d1tbga_ 194 PDTRLFVSGACDASAKLWDVREGMCRQTFTGHE--------------SDINAICFF-----PNGNAFATGSDDATCRLF- 253 (340)
T ss_dssp TTSSEEEEEETTTEEEEEETTTTEEEEEECCCS--------------SCEEEEEEC-----TTSSEEEEEETTSCEEEE-
T ss_pred cccceeEEeecCceEEEEECCCCcEEEEEeCCC--------------CCeEEEEEC-----CCCCEEEEEeCCCeEEEE-
Confidence 888999999999999999999998887776554 489999999 999999999999999999
Q ss_pred eccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEE
Q 021036 225 CDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGM 304 (318)
Q Consensus 225 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v 304 (318)
+.+............+...|.+++|+|++++|++|+.||.|++||+.+++... .+.+|.+.|+++
T Consensus 254 -~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~--------------~~~~H~~~V~~l 318 (340)
T d1tbga_ 254 -DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG--------------VLAGHDNRVSCL 318 (340)
T ss_dssp -ETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEE--------------EECCCSSCEEEE
T ss_pred -eecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEE--------------EEcCCCCCEEEE
Confidence 45555532333344577789999999999999999999999999998866543 234466799999
Q ss_pred EEcCCCcEEEEEe
Q 021036 305 AVSPGNLVVAMVQ 317 (318)
Q Consensus 305 ~~sp~~~~l~~~~ 317 (318)
+|+|++++|++|.
T Consensus 319 ~~s~d~~~l~s~s 331 (340)
T d1tbga_ 319 GVTDDGMAVATGS 331 (340)
T ss_dssp EECTTSSCEEEEE
T ss_pred EEeCCCCEEEEEc
Confidence 9999999999874
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=4.5e-30 Score=219.14 Aligned_cols=253 Identities=19% Similarity=0.141 Sum_probs=177.7
Q ss_pred ccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcE
Q 021036 17 THPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKV 96 (318)
Q Consensus 17 ~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i 96 (318)
...+++|+ |++|++||+.+++.+..+......... ...........|...|.++++++++++|++|+.||.|
T Consensus 74 g~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v 145 (388)
T d1erja_ 74 GEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKD-------PENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLI 145 (388)
T ss_dssp SSEEEEEC-BSCEEEEETTTCCEEEEECC------------------------CCCCBEEEEEECTTSSEEEEEETTSCE
T ss_pred CCEEEEEe-CCeEEEEEecccceEeeeccccccccc-------ccccccccccCCCCCEEEEEECCCCCcceeccccccc
Confidence 34566665 899999999998876665442211111 1111111234566778888888888999999999999
Q ss_pred EEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeeccc
Q 021036 97 SLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAH 176 (318)
Q Consensus 97 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 176 (318)
++|+...+ +.+..+.+|...|.++.| .+++..+++++.++.+++||..+.........+
T Consensus 146 ~i~~~~~~--------------~~~~~~~~h~~~v~~~~~-------~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 204 (388)
T d1erja_ 146 RIWDIENR--------------KIVMILQGHEQDIYSLDY-------FPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE 204 (388)
T ss_dssp EEEETTTT--------------EEEEEECCCSSCEEEEEE-------CTTSSEEEEEETTSEEEEEETTTTEEEEEEECS
T ss_pred cccccccc--------------cccccccccccccccccc-------ccccccccccccceeeeeeeccccccccccccc
Confidence 99999874 456778899999999999 888889999999999999998876544332211
Q ss_pred cccccc-----------------------------------ceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEE
Q 021036 177 CVPFSL-----------------------------------LKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFD 221 (318)
Q Consensus 177 ~~~~~~-----------------------------------~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~ 221 (318)
...... .......|..+|.+++|+ |++.+|++|+.||.|+
T Consensus 205 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s-----~~~~~l~s~~~d~~i~ 279 (388)
T d1erja_ 205 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT-----RDGQSVVSGSLDRSVK 279 (388)
T ss_dssp SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEEC-----TTSSEEEEEETTSEEE
T ss_pred cccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEEC-----CCCCEEEEEECCCcEE
Confidence 110000 001123467789999999 9999999999999999
Q ss_pred EeeeccCCC--------eeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCcccccc
Q 021036 222 LWKCDISCN--------KFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTD 293 (318)
Q Consensus 222 vw~~~~~~~--------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 293 (318)
+|++..... ..........|...|.+++|+|++++|++|+.||.|++||+++++... .
T Consensus 280 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~--------------~ 345 (388)
T d1erja_ 280 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL--------------M 345 (388)
T ss_dssp EEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEE--------------E
T ss_pred EEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEE--------------E
Confidence 996532211 111334456788999999999999999999999999999999876543 2
Q ss_pred CCCcceeeeEEEE------cCCCcEEEEEe
Q 021036 294 LPDAFVSCLGMAV------SPGNLVVAMVQ 317 (318)
Q Consensus 294 ~~~h~~~v~~v~~------sp~~~~l~~~~ 317 (318)
+.+|.+.|.++++ +|++.+||+|.
T Consensus 346 l~~H~~~V~~~~~~~~~~~spd~~~l~s~s 375 (388)
T d1erja_ 346 LQGHRNSVISVAVANGSSLGPEYNVFATGS 375 (388)
T ss_dssp EECCSSCEEEEEECSSCTTCTTCEEEEEEE
T ss_pred EeCCCCCEEEEEEecCcccCCCCCEEEEEe
Confidence 2235568888864 67899999974
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=3.9e-27 Score=197.55 Aligned_cols=190 Identities=15% Similarity=0.173 Sum_probs=162.0
Q ss_pred CCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcE
Q 021036 70 SKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVL 149 (318)
Q Consensus 70 ~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~ 149 (318)
+|..+|.++++++++++|++|+.||.|++||+.... .+....+..|...|.++.| ++++.+
T Consensus 95 ~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~------------~~~~~~~~~~~~~v~~~~~-------~~~~~~ 155 (337)
T d1gxra_ 95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT------------PRIKAELTSSAPACYALAI-------SPDSKV 155 (337)
T ss_dssp CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--------------EEEEEEECSSSCEEEEEE-------CTTSSE
T ss_pred CCCCcEEEEEEcCCCCEEEEeecccccccccccccc------------ccccccccccccccccccc-------cccccc
Confidence 577789999999999999999999999999998644 4456677889999999999 899999
Q ss_pred EEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCC
Q 021036 150 LVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISC 229 (318)
Q Consensus 150 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~ 229 (318)
+++++.|+.|++|++.+++.......+ ...+.+++|+ +++..+++++.|+.|++| +.++
T Consensus 156 l~s~~~d~~i~~~~~~~~~~~~~~~~~--------------~~~v~~l~~s-----~~~~~~~~~~~d~~v~i~--d~~~ 214 (337)
T d1gxra_ 156 CFSCCSDGNIAVWDLHNQTLVRQFQGH--------------TDGASCIDIS-----NDGTKLWTGGLDNTVRSW--DLRE 214 (337)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCC--------------SSCEEEEEEC-----TTSSEEEEEETTSEEEEE--ETTT
T ss_pred ccccccccccccccccccccccccccc--------------cccccccccc-----cccccccccccccccccc--cccc
Confidence 999999999999999988776655544 3489999999 999999999999999999 5666
Q ss_pred CeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCC
Q 021036 230 NKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPG 309 (318)
Q Consensus 230 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 309 (318)
++ .+..+ .|...|.+++|+|++.+|++++.|+.+++||++++....... |...|++++|+|+
T Consensus 215 ~~--~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---------------~~~~i~~v~~s~~ 276 (337)
T d1gxra_ 215 GR--QLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHL---------------HESCVLSLKFAYC 276 (337)
T ss_dssp TE--EEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECC---------------CSSCEEEEEECTT
T ss_pred ce--eeccc-ccccceEEEEEcccccccceeccccccccccccccccccccc---------------cccccceEEECCC
Confidence 65 44444 488899999999999999999999999999998877654332 4458999999999
Q ss_pred CcEEEEEe
Q 021036 310 NLVVAMVQ 317 (318)
Q Consensus 310 ~~~l~~~~ 317 (318)
+++|++|.
T Consensus 277 g~~l~s~s 284 (337)
T d1gxra_ 277 GKWFVSTG 284 (337)
T ss_dssp SSEEEEEE
T ss_pred CCEEEEEe
Confidence 99999874
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.96 E-value=1.9e-27 Score=198.45 Aligned_cols=209 Identities=15% Similarity=0.191 Sum_probs=165.3
Q ss_pred cCCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCC
Q 021036 67 RLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNP 146 (318)
Q Consensus 67 ~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~ 146 (318)
.+++|..+|++++|++++++|++|+.||+|+|||+.++ +.+..+..|..+|.+++| +++
T Consensus 50 tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~--------------~~~~~~~~~~~~v~~v~~-------~~~ 108 (340)
T d1tbga_ 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTT--------------NKVHAIPLRSSWVMTCAY-------APS 108 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTT--------------EEEEEEECSCSCEEEEEE-------CTT
T ss_pred EECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccc--------------eeEEEEecccccEEeeEe-------ecc
Confidence 47789999999999999999999999999999999984 466788899999999999 899
Q ss_pred CcEEEEEeCCCcEEEEECCCccee----eeeccccccccc---------------------------ceeeeeeccccee
Q 021036 147 QVLLVTGSSDGSVRIWDGYIQELQ----KSAEAHCVPFSL---------------------------LKEVVTVNTVPIS 195 (318)
Q Consensus 147 ~~~l~s~~~d~~v~iwd~~~~~~~----~~~~~~~~~~~~---------------------------~~~~~~~~~~~v~ 195 (318)
+.++++|+.|+.+++|+....... ..+..+...... .......+...+.
T Consensus 109 ~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (340)
T d1tbga_ 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVM 188 (340)
T ss_dssp SSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEE
T ss_pred ceeeeeecccceeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEe
Confidence 999999999999999998754321 122221110000 0012233445566
Q ss_pred EEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCc
Q 021036 196 VLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNS 275 (318)
Q Consensus 196 ~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 275 (318)
...+. +.+.++++|+.|+.|++| |.++++ ++..+.+|...|++++|+|++.+|++++.|+.|++||++...
T Consensus 189 ~~~~~-----~~~~~~~~~~~d~~v~i~--d~~~~~--~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~ 259 (340)
T d1tbga_ 189 SLSLA-----PDTRLFVSGACDASAKLW--DVREGM--CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 259 (340)
T ss_dssp EEEEC-----TTSSEEEEEETTTEEEEE--ETTTTE--EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred eeccc-----cccceeEEeecCceEEEE--ECCCCc--EEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccc
Confidence 77776 889999999999999999 566766 677888999999999999999999999999999999998766
Q ss_pred eeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 276 LSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
........ .+...|.+++|+|++++|++|.
T Consensus 260 ~~~~~~~~------------~~~~~i~~~~~s~~~~~l~~g~ 289 (340)
T d1tbga_ 260 ELMTYSHD------------NIICGITSVSFSKSGRLLLAGY 289 (340)
T ss_dssp EEEEECCT------------TCCSCEEEEEECSSSCEEEEEE
T ss_pred cccccccc------------cccCceEEEEECCCCCEEEEEE
Confidence 54332211 1345799999999999999874
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.96 E-value=4.1e-27 Score=193.75 Aligned_cols=209 Identities=19% Similarity=0.137 Sum_probs=155.4
Q ss_pred CCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeee-ccccccEEEEEeeeecCCCCCC
Q 021036 68 LSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLF-QAHNSWITSISLAVLSSDSSNP 146 (318)
Q Consensus 68 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~~~~ 146 (318)
+++|..+|++++++|++++|++|+.||.|++||+++++ .++.+ ..|...|++++| +++
T Consensus 8 ~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~--------------~~~~~~~~h~~~v~~v~~-------~~~ 66 (299)
T d1nr0a2 8 RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI--------------SNRVFPDVHATMITGIKT-------TSK 66 (299)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC--------------EEECSSCSCSSCEEEEEE-------CTT
T ss_pred cCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCc--------------EEEEEcCCCCCcEEEEEe-------ecc
Confidence 56788889999999999999999999999999999854 34445 478999999999 788
Q ss_pred CcEEEEEeCCCcEEEEECCCcceeee---eccccc-----ccc------------------cceeeeeecccceeEEEEe
Q 021036 147 QVLLVTGSSDGSVRIWDGYIQELQKS---AEAHCV-----PFS------------------LLKEVVTVNTVPISVLSLI 200 (318)
Q Consensus 147 ~~~l~s~~~d~~v~iwd~~~~~~~~~---~~~~~~-----~~~------------------~~~~~~~~~~~~v~~l~~~ 200 (318)
++ +++++.|+.+++|+......... ...+.. .+. ..+.........+.+++++
T Consensus 67 g~-~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s 145 (299)
T d1nr0a2 67 GD-LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALS 145 (299)
T ss_dssp SC-EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEEC
T ss_pred ce-eecccceeeEEEeccCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 86 55677899999999764321100 000000 000 0001122334567888998
Q ss_pred eccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeee
Q 021036 201 LPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVS 280 (318)
Q Consensus 201 ~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 280 (318)
|++++|++|+.||.|++||+ ++.+...+ ....|...|++++|+|++.+|++++.|+.|++||+.++......
T Consensus 146 -----~~~~~l~~g~~dg~i~~~d~--~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~ 217 (299)
T d1nr0a2 146 -----NDKQFVAVGGQDSKVHVYKL--SGASVSEV-KTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHT 217 (299)
T ss_dssp -----TTSCEEEEEETTSEEEEEEE--ETTEEEEE-EEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCC
T ss_pred -----cccccccccccccccccccc--cccccccc-cccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999954 45543233 33468899999999999999999999999999999876543211
Q ss_pred cCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 281 IPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 281 ~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
..+.+|...|++++|+|++++|++|.
T Consensus 218 -----------~~~~~h~~~v~~l~~s~~~~~l~sgs 243 (299)
T d1nr0a2 218 -----------NSWTFHTAKVACVSWSPDNVRLATGS 243 (299)
T ss_dssp -----------CCCCCCSSCEEEEEECTTSSEEEEEE
T ss_pred -----------ccccccccccccccccccccceEEEc
Confidence 13445778999999999999999874
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.96 E-value=7.1e-27 Score=192.33 Aligned_cols=237 Identities=13% Similarity=0.104 Sum_probs=156.3
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCc
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGK 95 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~ 95 (318)
+...+++|+.|++|++||+++++.+..+.. .|... +.+++|+|++ ++ ++++.|+.
T Consensus 23 dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~---~h~~~---v~~v~~~~~g------------------~~-~~~~~d~~ 77 (299)
T d1nr0a2 23 DGKTLFSADAEGHINSWDISTGISNRVFPD---VHATM---ITGIKTTSKG------------------DL-FTVSWDDH 77 (299)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCEEECSSC---SCSSC---EEEEEECTTS------------------CE-EEEETTTE
T ss_pred CCCEEEEEcCCCeEEEEECCCCcEEEEEcC---CCCCc---EEEEEeeccc------------------ee-ecccceee
Confidence 456689999999999999998876544321 13333 3446666665 43 33344666
Q ss_pred EEEEEccCCccccccc-----c------ccCCc-----------------eeEEeeeccccccEEEEEeeeecCCCCCCC
Q 021036 96 VSLWRICVPKCYSVED-----C------KVPTT-----------------AVLIGLFQAHNSWITSISLAVLSSDSSNPQ 147 (318)
Q Consensus 96 i~iw~~~~~~~~~~~~-----~------~~~~~-----------------~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~ 147 (318)
+++|+........... . ....+ .+.... .....+.+++| ++++
T Consensus 78 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~-------s~~~ 148 (299)
T d1nr0a2 78 LKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEV--PISYNSSCVAL-------SNDK 148 (299)
T ss_dssp EEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEE--ECSSCEEEEEE-------CTTS
T ss_pred EEEeccCCcccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccc-------cccc
Confidence 6666654322111000 0 00000 011111 13346788999 8999
Q ss_pred cEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeecc
Q 021036 148 VLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDI 227 (318)
Q Consensus 148 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 227 (318)
++|++|+.|+.|++||+++++...... ..|...|.+++|+ |++.+|++++.|+.|++|++..
T Consensus 149 ~~l~~g~~dg~i~~~d~~~~~~~~~~~-------------~~~~~~i~~~~~~-----~~~~~l~~~~~d~~i~~~~~~~ 210 (299)
T d1nr0a2 149 QFVAVGGQDSKVHVYKLSGASVSEVKT-------------IVHPAEITSVAFS-----NNGAFLVATDQSRKVIPYSVAN 210 (299)
T ss_dssp CEEEEEETTSEEEEEEEETTEEEEEEE-------------EECSSCEEEEEEC-----TTSSEEEEEETTSCEEEEEGGG
T ss_pred ccccccccccccccccccccccccccc-------------ccccccccccccc-----cccccccccccccccccccccc
Confidence 999999999999999998765443211 2355689999999 9999999999999999995432
Q ss_pred CCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEc
Q 021036 228 SCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVS 307 (318)
Q Consensus 228 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s 307 (318)
. ........+.+|...|++++|+|++.+|++|+.|+.|++||++++.......... .+...+..+.|
T Consensus 211 ~-~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~~v~~~~~- 277 (299)
T d1nr0a2 211 N-FELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGA-----------HAMSSVNSVIW- 277 (299)
T ss_dssp T-TEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTS-----------STTSCEEEEEE-
T ss_pred c-ccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecC-----------CCCCcEEEEEE-
Confidence 2 2222445667899999999999999999999999999999998755433221111 12346677766
Q ss_pred CCCcEEEEEe
Q 021036 308 PGNLVVAMVQ 317 (318)
Q Consensus 308 p~~~~l~~~~ 317 (318)
+++++|+++.
T Consensus 278 ~~~~~l~s~s 287 (299)
T d1nr0a2 278 LNETTIVSAG 287 (299)
T ss_dssp EETTEEEEEE
T ss_pred CCCCEEEEEe
Confidence 4556777763
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=8.2e-27 Score=194.68 Aligned_cols=205 Identities=14% Similarity=0.079 Sum_probs=155.7
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEec--CC
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGG--RS 93 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~--~d 93 (318)
+...+++|+.||+|++||+..++....+.... ......|..+|.++++++++++|++++ .+
T Consensus 76 ~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~-----------------~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~ 138 (325)
T d1pgua1 76 GSQYLCSGDESGKVIVWGWTFDKESNSVEVNV-----------------KSEFQVLAGPISDISWDFEGRRLCVVGEGRD 138 (325)
T ss_dssp TCCEEEEEETTSEEEEEEEEEEGGGTEEEEEE-----------------EEEEECCSSCEEEEEECTTSSEEEEEECCSS
T ss_pred CCCEEEEEeCCCCEEEeeecCCcceeeeeccc-----------------ccccccccCcEEEEEECCCCCccceeecccc
Confidence 44567899999999999998776654443211 001223445555555555568887765 47
Q ss_pred CcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCc-EEEEEeCCCcEEEEECCCcceeee
Q 021036 94 GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQV-LLVTGSSDGSVRIWDGYIQELQKS 172 (318)
Q Consensus 94 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~ 172 (318)
+.+++|+.+++ +.+..+.+|...|.+++| ++++. ++++++.|+.+++||+...+....
T Consensus 139 ~~~~~~~~~~~--------------~~~~~~~~h~~~v~~~~~-------~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~ 197 (325)
T d1pgua1 139 NFGVFISWDSG--------------NSLGEVSGHSQRINACHL-------KQSRPMRSMTVGDDGSVVFYQGPPFKFSAS 197 (325)
T ss_dssp CSEEEEETTTC--------------CEEEECCSCSSCEEEEEE-------CSSSSCEEEEEETTTEEEEEETTTBEEEEE
T ss_pred ceEEEEeeccc--------------ccceeeeecccccccccc-------cccccceEEEeeccccccccccccccccee
Confidence 78999999874 466778899999999999 66665 578899999999999987766555
Q ss_pred ecccccccccceeeeeecccceeEEEEeeccCCCC-ceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEc
Q 021036 173 AEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPR-LMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWA 251 (318)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 251 (318)
...+. .+...|.+++|+ |+ +.+|++++.|+.|++| |.++++ .+..+.+|..++..+.|+
T Consensus 198 ~~~~~-----------~~~~~v~~v~~~-----pd~~~~l~s~~~d~~i~iw--d~~~~~--~~~~l~~~~~~v~~~~~s 257 (325)
T d1pgua1 198 DRTHH-----------KQGSFVRDVEFS-----PDSGEFVITVGSDRKISCF--DGKSGE--FLKYIEDDQEPVQGGIFA 257 (325)
T ss_dssp ECSSS-----------CTTCCEEEEEEC-----STTCCEEEEEETTCCEEEE--ETTTCC--EEEECCBTTBCCCSCEEE
T ss_pred ccccc-----------CCCCccEEeeec-----cccceeccccccccceeee--eecccc--ccccccccccccccceee
Confidence 43322 345579999999 75 6899999999999999 566666 677888888888777776
Q ss_pred ---CCCCEEEEecCCCcEEEEEecCCceee
Q 021036 252 ---FDGCCLYSCSQDNFVRSWIFHGNSLSQ 278 (318)
Q Consensus 252 ---~~~~~l~s~~~d~~v~iwd~~~~~~~~ 278 (318)
|+|++|++++.|++|+|||+++++...
T Consensus 258 ~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~ 287 (325)
T d1pgua1 258 LSWLDSQKFATVGADATIRVWDVTTSKCVQ 287 (325)
T ss_dssp EEESSSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred eeccCCCEEEEEeCCCeEEEEECCCCCEEE
Confidence 689999999999999999999877543
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.1e-27 Score=205.34 Aligned_cols=225 Identities=18% Similarity=0.129 Sum_probs=149.6
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceecchhc---cccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCC
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITADQYA---SRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSG 94 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg 94 (318)
..+++++.|+.+++|++........+...... ..........++|.+.. ....+.++++++.||
T Consensus 80 ~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~dg 146 (393)
T d1sq9a_ 80 CLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN-------------DRLLSHRLVATDVKG 146 (393)
T ss_dssp EEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----------------CEEEEEEETTS
T ss_pred cEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCC-------------CcccccEEEEEcCCC
Confidence 34568899999999998765544433221110 00000112235555543 011247899999999
Q ss_pred cEEEEEccCCccccccc-cccCCce---eEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCccee
Q 021036 95 KVSLWRICVPKCYSVED-CKVPTTA---VLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQ 170 (318)
Q Consensus 95 ~i~iw~~~~~~~~~~~~-~~~~~~~---~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 170 (318)
.+++|++.......... ....... ........+...+.+++| ++++ +|++|+.|++|++||+.+++.+
T Consensus 147 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-------s~dg-~lasgs~Dg~i~iwd~~~~~~~ 218 (393)
T d1sq9a_ 147 TTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDI-------SERG-LIATGFNNGTVQISELSTLRPL 218 (393)
T ss_dssp CEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEE-------CTTS-EEEEECTTSEEEEEETTTTEEE
T ss_pred cEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEE-------CCCC-EEEEEeCCCcEEEEeecccccc
Confidence 99999986432111000 0000001 112223345667899999 7887 8899999999999999998877
Q ss_pred eeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCc---EEEeeeccCCCeee-----------Eee
Q 021036 171 KSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGS---FDLWKCDISCNKFD-----------KVG 236 (318)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~---i~vw~~~~~~~~~~-----------~~~ 236 (318)
..+.... ....|..+|++++|+ |++++|++|+.|++ |++| |.++++.. ...
T Consensus 219 ~~~~~~~--------~l~~h~~~V~~l~~s-----pdg~~l~sgs~D~t~~~i~lw--d~~~g~~~~~l~~~~~~~~~~~ 283 (393)
T d1sq9a_ 219 YNFESQH--------SMINNSNSIRSVKFS-----PQGSLLAIAHDSNSFGCITLY--ETEFGERIGSLSVPTHSSQASL 283 (393)
T ss_dssp EEEECCC-----------CCCCCEEEEEEC-----SSTTEEEEEEEETTEEEEEEE--ETTTCCEEEEECBC--------
T ss_pred ccccccc--------ccccccceEEEcccc-----cccceeeeecCCCCcceeeec--ccccceeeeeecccccccccee
Confidence 6654322 224577799999999 99999999998875 8999 45554411 112
Q ss_pred eeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceee
Q 021036 237 SYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQ 278 (318)
Q Consensus 237 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~ 278 (318)
.+.+|...|++++|+|++++|++++.|++|++||+.++++..
T Consensus 284 ~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~ 325 (393)
T d1sq9a_ 284 GEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERIT 325 (393)
T ss_dssp CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred eeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEE
Confidence 235799999999999999999999999999999999876553
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.95 E-value=9.1e-27 Score=191.82 Aligned_cols=193 Identities=20% Similarity=0.275 Sum_probs=157.1
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCc
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGK 95 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~ 95 (318)
+...+++++.|+.+++||+++++....+.. +... ..+++|+|++ ++|++++.||.
T Consensus 112 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~~------------------~~l~~~~~d~~ 166 (317)
T d1vyhc1 112 NGDHIVSASRDKTIKMWEVQTGYCVKTFTG----HREW---VRMVRPNQDG------------------TLIASCSNDQT 166 (317)
T ss_dssp SSSEEEEEETTSEEEEEETTTCCEEEEEEC----CSSC---EEEEEECTTS------------------SEEEEEETTSC
T ss_pred CCceEEeeccCcceeEeecccceeeeEEcc----CCCc---ceeeecccCC------------------CEEEEEeCCCe
Confidence 345588999999999999998876555432 2222 3347777776 99999999999
Q ss_pred EEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCC-------------CCCCCcEEEEEeCCCcEEEE
Q 021036 96 VSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSD-------------SSNPQVLLVTGSSDGSVRIW 162 (318)
Q Consensus 96 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-------------~~~~~~~l~s~~~d~~v~iw 162 (318)
|++|+..+++ ....+.+|...+.++.|.|.... ....+.++++++.|+.|++|
T Consensus 167 v~~~~~~~~~--------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 232 (317)
T d1vyhc1 167 VRVWVVATKE--------------CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW 232 (317)
T ss_dssp EEEEETTTCC--------------EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEE
T ss_pred EEEEeeccce--------------eeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEE
Confidence 9999999844 55678889999999999554210 12234689999999999999
Q ss_pred ECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeeccc
Q 021036 163 DGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHD 242 (318)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~ 242 (318)
|+++++.+..+..|. ..|.+++++ |++++|++|+.||.|++| +.++++ ++.++.+|.
T Consensus 233 ~~~~~~~~~~~~~~~--------------~~v~~~~~~-----~~~~~l~s~~~dg~i~iw--d~~~~~--~~~~~~~h~ 289 (317)
T d1vyhc1 233 DVSTGMCLMTLVGHD--------------NWVRGVLFH-----SGGKFILSCADDKTLRVW--DYKNKR--CMKTLNAHE 289 (317)
T ss_dssp ETTTTEEEEEEECCS--------------SCEEEEEEC-----SSSSCEEEEETTTEEEEE--CCTTSC--CCEEEECCS
T ss_pred ECCCCcEEEEEeCCC--------------CCEEEEEEC-----CCCCEEEEEECCCeEEEE--ECCCCc--EEEEEcCCC
Confidence 999998887776544 489999999 999999999999999999 566665 678899999
Q ss_pred CceeEEEEcCCCCEEEEecCCCcEEEEE
Q 021036 243 QVVTGLAWAFDGCCLYSCSQDNFVRSWI 270 (318)
Q Consensus 243 ~~v~~~~~~~~~~~l~s~~~d~~v~iwd 270 (318)
..|++++|+|++++|++|+.||+|++||
T Consensus 290 ~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 290 HFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp SCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 9999999999999999999999999996
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=8.7e-26 Score=192.32 Aligned_cols=238 Identities=18% Similarity=0.129 Sum_probs=166.0
Q ss_pred eEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEEE
Q 021036 20 TVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLW 99 (318)
Q Consensus 20 ~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw 99 (318)
.+.+..++...+|+....+........ ..+|..+|++++|+++|++||+|+ |+.|+||
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~---------------------~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW 88 (388)
T d1erja_ 31 ALKKQTNDYYILYNPALPREIDVELHK---------------------SLDHTSVVCCVKFSNDGEYLATGC-NKTTQVY 88 (388)
T ss_dssp TSEEECSSCEEEECTTSCCCEEEEEEE---------------------EEECSSCCCEEEECTTSSEEEEEC-BSCEEEE
T ss_pred ccccCCCCcEEEeCCCCCcceeeeeEe---------------------eCCCCCcEEEEEECCCCCEEEEEe-CCeEEEE
Confidence 467788888888886554432211111 113556666666666669999987 8999999
Q ss_pred EccCCccccccccccC--C--ceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecc
Q 021036 100 RICVPKCYSVEDCKVP--T--TAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEA 175 (318)
Q Consensus 100 ~~~~~~~~~~~~~~~~--~--~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 175 (318)
++.+++.......... . ..........|...|++++| ++++++|++|+.||.|++||...++.......
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~-------s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~ 161 (388)
T d1erja_ 89 RVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCF-------SPDGKFLATGAEDRLIRIWDIENRKIVMILQG 161 (388)
T ss_dssp ETTTCCEEEEECC-----------------CCCCBEEEEEE-------CTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EecccceEeeecccccccccccccccccccCCCCCEEEEEE-------CCCCCcceeccccccccccccccccccccccc
Confidence 9998765432111100 0 00111223467888999999 89999999999999999999998887776654
Q ss_pred cccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcC-CC
Q 021036 176 HCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAF-DG 254 (318)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~ 254 (318)
|. ..|.++.++ +++..+++++.++.+++| +.++.. .......+.. ..++.+.+ ++
T Consensus 162 h~--------------~~v~~~~~~-----~~~~~~~~~~~~~~i~~~--d~~~~~--~~~~~~~~~~-~~~~~~~~~~~ 217 (388)
T d1erja_ 162 HE--------------QDIYSLDYF-----PSGDKLVSGSGDRTVRIW--DLRTGQ--CSLTLSIEDG-VTTVAVSPGDG 217 (388)
T ss_dssp CS--------------SCEEEEEEC-----TTSSEEEEEETTSEEEEE--ETTTTE--EEEEEECSSC-EEEEEECSTTC
T ss_pred cc--------------ccccccccc-----cccccccccccceeeeee--eccccc--cccccccccc-cccccccCCCC
Confidence 44 489999999 899999999999999999 555554 3444444444 44555554 78
Q ss_pred CEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 255 CCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 255 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
.+|++++.|+.|++||+.++.......... ....+|...|.+++|+|++++|++|.
T Consensus 218 ~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~-------~~~~~h~~~v~~l~~s~~~~~l~s~~ 273 (388)
T d1erja_ 218 KYIAAGSLDRAVRVWDSETGFLVERLDSEN-------ESGTGHKDSVYSVVFTRDGQSVVSGS 273 (388)
T ss_dssp CEEEEEETTSCEEEEETTTCCEEEEEC-------------CCCSSCEEEEEECTTSSEEEEEE
T ss_pred CeEEEEcCCCeEEEeecccCccceeecccc-------ccccCCCCCEEEEEECCCCCEEEEEE
Confidence 999999999999999998866543322211 13456888999999999999999874
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=9.5e-26 Score=187.79 Aligned_cols=153 Identities=20% Similarity=0.288 Sum_probs=113.2
Q ss_pred eEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEE
Q 021036 119 VLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLS 198 (318)
Q Consensus 119 ~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 198 (318)
..+..+.+|...+..+.+ ++.+|++++.||.|++||++.++.+..+..+.. .+.++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~---------~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~--------------~v~~~~ 224 (342)
T d2ovrb2 168 TCLHTLQGHTNRVYSLQF---------DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS--------------LTSGME 224 (342)
T ss_dssp EEEEEECCCSSCEEEEEE---------CSSEEEEEETTSCEEEEETTTCCEEEEECCCCS--------------CEEEEE
T ss_pred eeeEEEcCcccccccccC---------CCCEEEEEeCCCeEEEeecccceeeeEeccccc--------------ceeEEe
Confidence 344555667666666555 567899999999999999999888777665543 677776
Q ss_pred EeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeee---cccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCc
Q 021036 199 LILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYN---AHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNS 275 (318)
Q Consensus 199 ~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 275 (318)
++ +++|++|+.||.|++|+ ....+ ....+. .|...+.++.++ +.++++|+.||+|++||+++++
T Consensus 225 ~~-------~~~l~s~s~d~~i~iwd--~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~ 291 (342)
T d2ovrb2 225 LK-------DNILVSGNADSTVKIWD--IKTGQ--CLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGE 291 (342)
T ss_dssp EE-------TTEEEEEETTSCEEEEE--TTTCC--EEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC
T ss_pred cC-------CCEEEEEcCCCEEEEEe--ccccc--ccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCC
Confidence 65 46999999999999995 44443 233333 456667776665 5689999999999999999876
Q ss_pred eee-eecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 276 LSQ-VSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 276 ~~~-~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
... +.... ..+|.+.|++++|+|++.+||+|.
T Consensus 292 ~i~~~~~~~----------~~~~~~~v~~v~~s~~~~~la~g~ 324 (342)
T d2ovrb2 292 FIRNLVTLE----------SGGSGGVVWRIRASNTKLVCAVGS 324 (342)
T ss_dssp EEEEEEECT----------TGGGTCEEEEEEECSSEEEEEEEC
T ss_pred EEEEEeccc----------CCCCCCCEEEEEECCCCCEEEEEe
Confidence 643 32222 124677999999999999999974
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=6.4e-26 Score=189.80 Aligned_cols=244 Identities=14% Similarity=0.165 Sum_probs=171.4
Q ss_pred ccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCC-------------------------CC
Q 021036 17 THPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLS-------------------------SK 71 (318)
Q Consensus 17 ~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~-------------------------~~ 71 (318)
...++||+.|++|++||+.+++++..+.. |... +.+++|+|.+.+. .+
T Consensus 23 ~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~----H~~~---V~~l~~s~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~ 95 (355)
T d1nexb2 23 DNYVITGADDKMIRVYDSINKKFLLQLSG----HDGG---VWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNS 95 (355)
T ss_dssp TTEEEEEETTTEEEEEETTTTEEEEEEEC----CSSC---EEEEEEETTTEEEEEETTCCEEEEETTTTEEEEEECCCSS
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEEEC----CCCC---EEEEEEcCCCEEEEEecccccccccccccccccccccccc
Confidence 35689999999999999999887766653 4444 4457777754311 11
Q ss_pred cccccccCCCCCccEEEEecCCCcEEEEEccCCccccccc----------------------------------------
Q 021036 72 KYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVED---------------------------------------- 111 (318)
Q Consensus 72 ~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~---------------------------------------- 111 (318)
..........+++.++++++.|+.|++|++.+........
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 175 (355)
T d1nexb2 96 TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVV 175 (355)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEE
T ss_pred cccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceee
Confidence 1223444566778899999999999999987654221000
Q ss_pred ---------cccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeeccccccccc
Q 021036 112 ---------CKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSL 182 (318)
Q Consensus 112 ---------~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~ 182 (318)
.......+.+....++...+.++.| ++++.++++++.|+.|++||++++..+..+..|.
T Consensus 176 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~----- 243 (355)
T d1nexb2 176 SGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIY-------DHERKRCISASMDTTIRIWDLENGELMYTLQGHT----- 243 (355)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE-------ETTTTEEEEEETTSCEEEEETTTCCEEEEECCCS-----
T ss_pred eecccceeeeeecccccceeeeeccccccccccc-------cccceeeecccccceEEeeecccccccccccccc-----
Confidence 0001123444556667788899999 8889999999999999999999998887776554
Q ss_pred ceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEE-EcCCCCEEEEec
Q 021036 183 LKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLA-WAFDGCCLYSCS 261 (318)
Q Consensus 183 ~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~-~~~~~~~l~s~~ 261 (318)
..|.+++++ +++|++|+.||.|++|| .++.. ..+..|...+.++. +++++.++++|
T Consensus 244 ---------~~v~~~~~~-------~~~l~~~~~dg~i~iwd--~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~g- 300 (355)
T d1nexb2 244 ---------ALVGLLRLS-------DKFLVSAAADGSIRGWD--ANDYS----RKFSYHHTNLSAITTFYVSDNILVSG- 300 (355)
T ss_dssp ---------SCCCEEEEC-------SSEEEEECTTSEEEEEE--TTTCC----EEEEEECTTCCCCCEEEECSSEEEEE-
T ss_pred ---------ccccccccc-------cceeeeeeccccccccc--ccccc----eecccccCCceEEEEEcCCCCEEEEE-
Confidence 378888876 46899999999999994 54543 23455666666654 56677766665
Q ss_pred CCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 262 QDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 262 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
.|++|++||++++++... .+.+|.+.|.+++|+|+. +++++
T Consensus 301 ~d~~i~vwd~~tg~~~~~-------------~~~~~~~~V~~v~~~~~~-~~~~~ 341 (355)
T d1nexb2 301 SENQFNIYNLRSGKLVHA-------------NILKDADQIWSVNFKGKT-LVAAV 341 (355)
T ss_dssp ETTEEEEEETTTCCBCCS-------------CTTTTCSEEEEEEEETTE-EEEEE
T ss_pred eCCEEEEEECCCCCEEEE-------------EecCCCCCEEEEEEcCCe-EEEEE
Confidence 589999999998776532 233466799999999974 55554
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=1.2e-24 Score=181.34 Aligned_cols=186 Identities=16% Similarity=0.085 Sum_probs=137.5
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeC--CCcEEE
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSS--DGSVRI 161 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~--d~~v~i 161 (318)
+.+|++|+.||+|+|||+..++.... ........+..|.++|.+++| ++++++|++++. ++.+++
T Consensus 77 g~~lasgs~Dg~i~iWd~~~~~~~~~------~~~~~~~~~~~~~~~v~~v~~-------s~~~~~l~~~~~~~~~~~~~ 143 (325)
T d1pgua1 77 SQYLCSGDESGKVIVWGWTFDKESNS------VEVNVKSEFQVLAGPISDISW-------DFEGRRLCVVGEGRDNFGVF 143 (325)
T ss_dssp CCEEEEEETTSEEEEEEEEEEGGGTE------EEEEEEEEEECCSSCEEEEEE-------CTTSSEEEEEECCSSCSEEE
T ss_pred CCEEEEEeCCCCEEEeeecCCcceee------eecccccccccccCcEEEEEE-------CCCCCccceeeccccceEEE
Confidence 58999999999999999986543210 001222345678899999999 899999888764 678999
Q ss_pred EECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCce-EEEEEeCCCcEEEeeeccCCCee-eEeeeee
Q 021036 162 WDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLM-LLAVGKGSGSFDLWKCDISCNKF-DKVGSYN 239 (318)
Q Consensus 162 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~-~~~~~~~ 239 (318)
|+..+++.+..+..|. ..|.+++|+ |++. ++++++.|+.+++|+ ....+. .......
T Consensus 144 ~~~~~~~~~~~~~~h~--------------~~v~~~~~~-----~~~~~~~~~~~~d~~v~~~d--~~~~~~~~~~~~~~ 202 (325)
T d1pgua1 144 ISWDSGNSLGEVSGHS--------------QRINACHLK-----QSRPMRSMTVGDDGSVVFYQ--GPPFKFSASDRTHH 202 (325)
T ss_dssp EETTTCCEEEECCSCS--------------SCEEEEEEC-----SSSSCEEEEEETTTEEEEEE--TTTBEEEEEECSSS
T ss_pred Eeecccccceeeeecc--------------ccccccccc-----ccccceEEEeeccccccccc--ccccccceeccccc
Confidence 9999988887776554 389999999 7765 577899999999994 444432 2233345
Q ss_pred cccCceeEEEEcCC-CCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEc---CCCcEEEE
Q 021036 240 AHDQVVTGLAWAFD-GCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVS---PGNLVVAM 315 (318)
Q Consensus 240 ~h~~~v~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---p~~~~l~~ 315 (318)
+|...|++++|+|+ +.+|++++.|+.|++||+++++.... +.+|..++.++.|+ |||++|++
T Consensus 203 ~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~--------------l~~~~~~v~~~~~s~~~~dg~~l~s 268 (325)
T d1pgua1 203 KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKY--------------IEDDQEPVQGGIFALSWLDSQKFAT 268 (325)
T ss_dssp CTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEE--------------CCBTTBCCCSCEEEEEESSSSEEEE
T ss_pred CCCCccEEeeeccccceeccccccccceeeeeecccccccc--------------ccccccccccceeeeeccCCCEEEE
Confidence 67888999999997 67999999999999999988765432 12233344444444 67888888
Q ss_pred Ee
Q 021036 316 VQ 317 (318)
Q Consensus 316 ~~ 317 (318)
+.
T Consensus 269 ~s 270 (325)
T d1pgua1 269 VG 270 (325)
T ss_dssp EE
T ss_pred Ee
Confidence 74
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=2.3e-24 Score=175.39 Aligned_cols=232 Identities=16% Similarity=0.291 Sum_probs=160.7
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCc
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGK 95 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~ 95 (318)
+...++|||.|++|++||+++++++..+.. |.+. +.+++|+ +++|++|+.||.
T Consensus 24 d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~----H~~~---V~~v~~~--------------------~~~l~s~s~D~~ 76 (293)
T d1p22a2 24 DDQKIVSGLRDNTIKIWDKNTLECKRILTG----HTGS---VLCLQYD--------------------ERVIITGSSDST 76 (293)
T ss_dssp CSSEEEEEESSSCEEEEESSSCCEEEEECC----CSSC---EEEEECC--------------------SSEEEEEETTSC
T ss_pred cCCEEEEEeCCCeEEEEECCCCcEEEEEec----CCCC---Eeeeecc--------------------cceeeccccccc
Confidence 456799999999999999998876555432 3333 2334442 379999999999
Q ss_pred EEEEEccCCcccccccc-----------------------------ccCCceeEEeeeccccccEEEEEeeeecCCCCCC
Q 021036 96 VSLWRICVPKCYSVEDC-----------------------------KVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNP 146 (318)
Q Consensus 96 i~iw~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~ 146 (318)
|++|++..+........ ...........+..|...|..+.+ .
T Consensus 77 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~-- 147 (293)
T d1p22a2 77 VRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF-------D-- 147 (293)
T ss_dssp EEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE-------E--
T ss_pred ccccccccccccccccccccccccccccccceeecccccceeEeecccccccccccccccccccccccee-------c--
Confidence 99999987654321110 001112233345567778877777 3
Q ss_pred CcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeec
Q 021036 147 QVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCD 226 (318)
Q Consensus 147 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~ 226 (318)
...+++++.|+.+++||+++++.+..+..+.. .+..+.++ +..+++++.||.|++| +
T Consensus 148 ~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~--------------~v~~~~~~-------~~~l~~~~~dg~i~i~--d 204 (293)
T d1p22a2 148 DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKR--------------GIACLQYR-------DRLVVSGSSDNTIRLW--D 204 (293)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECCSS--------------CEEEEEEE-------TTEEEEEETTSCEEEE--E
T ss_pred ccccccccCCCceeeecCCCCcEEEEEccccc--------------ccccccCC-------CCeEEEecCCCEEEEE--e
Confidence 34688999999999999999988777655443 55555554 5689999999999999 5
Q ss_pred cCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEE
Q 021036 227 ISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAV 306 (318)
Q Consensus 227 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 306 (318)
.++.+ .+..+.+|...+.. +++++.+|++++.||.|++||+............ .....+.+|.+.|++++|
T Consensus 205 ~~~~~--~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~H~~~V~~v~~ 275 (293)
T d1p22a2 205 IECGA--CLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGT-----LCLRTLVEHSGRVFRLQF 275 (293)
T ss_dssp TTTCC--EEEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTT-----TEEEEECCCSSCCCCEEE
T ss_pred cccce--eeeeecccceeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCc-----eeeEEecCCCCCEEEEEE
Confidence 55655 56677778887765 4567889999999999999998753322111000 011245578889999999
Q ss_pred cCCCcEEEEEe
Q 021036 307 SPGNLVVAMVQ 317 (318)
Q Consensus 307 sp~~~~l~~~~ 317 (318)
+ +.+|++|.
T Consensus 276 d--~~~l~s~s 284 (293)
T d1p22a2 276 D--EFQIVSSS 284 (293)
T ss_dssp C--SSCEEECC
T ss_pred c--CCEEEEEe
Confidence 5 56787763
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=5.1e-25 Score=188.49 Aligned_cols=211 Identities=16% Similarity=0.083 Sum_probs=145.9
Q ss_pred ccceEEeeCCCceeEeecCCCCCCCc-eecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCc
Q 021036 17 THPTVAASKSKGNSITKIPSNCCLPL-ITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGK 95 (318)
Q Consensus 17 ~~~~~t~s~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~ 95 (318)
.+.+++++.|+++++|++........ ... +..... .+. ........+...+.++++++++ +|++|+.||+
T Consensus 136 ~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~----~~~~~~---~~~-~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~ 206 (393)
T d1sq9a_ 136 SHRLVATDVKGTTYIWKFHPFADESNSLTL----NWSPTL---ELQ-GTVESPMTPSQFATSVDISERG-LIATGFNNGT 206 (393)
T ss_dssp CEEEEEEETTSCEEEEEEESSSSHHHHTTT----CCCCEE---EEE-EEECCSSSSCCCCCEEEECTTS-EEEEECTTSE
T ss_pred ccEEEEEcCCCcEEEEEeecCCcccceeee----eeccce---ecc-cceecccCCCCcEEEEEECCCC-EEEEEeCCCc
Confidence 45678999999999999865322111 100 000000 010 0111122344556777777776 8899999999
Q ss_pred EEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCc---EEEEECCCcceeee
Q 021036 96 VSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGS---VRIWDGYIQELQKS 172 (318)
Q Consensus 96 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~---v~iwd~~~~~~~~~ 172 (318)
|+|||+.+++.... .+....+.+|..+|++++| +|++++|++|+.|++ |++||+.+++.+..
T Consensus 207 i~iwd~~~~~~~~~--------~~~~~~l~~h~~~V~~l~~-------spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~ 271 (393)
T d1sq9a_ 207 VQISELSTLRPLYN--------FESQHSMINNSNSIRSVKF-------SPQGSLLAIAHDSNSFGCITLYETEFGERIGS 271 (393)
T ss_dssp EEEEETTTTEEEEE--------EECCC---CCCCCEEEEEE-------CSSTTEEEEEEEETTEEEEEEEETTTCCEEEE
T ss_pred EEEEeecccccccc--------cccccccccccceEEEccc-------ccccceeeeecCCCCcceeeecccccceeeee
Confidence 99999998653210 1223355689999999999 899999999999874 89999999988887
Q ss_pred ecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCcee----EE
Q 021036 173 AEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVT----GL 248 (318)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~----~~ 248 (318)
+....... .......+|...|++++|+ |++++|++|+.|++|++| |+++++ ++.++++|...|. .+
T Consensus 272 l~~~~~~~-~~~~~~~gH~~~V~~l~fs-----pd~~~l~S~s~D~~v~vW--d~~~g~--~~~~l~gH~~~v~~~~~~~ 341 (393)
T d1sq9a_ 272 LSVPTHSS-QASLGEFAHSSWVMSLSFN-----DSGETLCSAGWDGKLRFW--DVKTKE--RITTLNMHCDDIEIEEDIL 341 (393)
T ss_dssp ECBC---------CCBSBSSCEEEEEEC-----SSSSEEEEEETTSEEEEE--ETTTTE--EEEEEECCGGGCSSGGGCC
T ss_pred eccccccc-cceeeeecccCceeeeccC-----CCCCeeEEECCCCEEEEE--ECCCCC--EEEEECCcCCcccCCccEE
Confidence 65433211 1122345788899999999 999999999999999999 666776 7888999988775 47
Q ss_pred EEcCCCCEEEEec
Q 021036 249 AWAFDGCCLYSCS 261 (318)
Q Consensus 249 ~~~~~~~~l~s~~ 261 (318)
+|+|++..+++++
T Consensus 342 ~~~~~~~~~~~~~ 354 (393)
T d1sq9a_ 342 AVDEHGDSLAEPG 354 (393)
T ss_dssp CBCTTSCBCSSCC
T ss_pred EECCCCCEEEEcc
Confidence 7888887766543
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=2e-24 Score=179.42 Aligned_cols=210 Identities=9% Similarity=0.032 Sum_probs=131.1
Q ss_pred CCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCC-CCc
Q 021036 70 SKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSN-PQV 148 (318)
Q Consensus 70 ~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~-~~~ 148 (318)
+|...|++++|+|++++||+|+.||+|+|||++++... ..+....+|..+|.+++| ++ ++.
T Consensus 9 ~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~-----------~~~~~~~~h~~~V~~v~f-------~~~~~~ 70 (342)
T d1yfqa_ 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN-----------VDLLQSLRYKHPLLCCNF-------IDNTDL 70 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE-----------EEEEEEEECSSCEEEEEE-------EESSSE
T ss_pred CCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcc-----------eEEEEecCCCCCEEEEEE-------eCCCCC
Confidence 44445555555555599999999999999999875431 233344479999999999 44 456
Q ss_pred EEEEEeCCCcEEEEECCCcceeeeecccccccccce------------------------------e-------------
Q 021036 149 LLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLK------------------------------E------------- 185 (318)
Q Consensus 149 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~------------------------------~------------- 185 (318)
+|++|+.|+.|++|++..+........+........ .
T Consensus 71 ~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~ 150 (342)
T d1yfqa_ 71 QIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVK 150 (342)
T ss_dssp EEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSC
T ss_pred EEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccce
Confidence 899999999999999986544332211110000000 0
Q ss_pred -------------------------------------eeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccC
Q 021036 186 -------------------------------------VVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDIS 228 (318)
Q Consensus 186 -------------------------------------~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~ 228 (318)
........+.+..+. +.++..+++++.||.+.+|+++..
T Consensus 151 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~s~dg~~~v~~~~~~ 226 (342)
T d1yfqa_ 151 NKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALL----PKEQEGYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp CCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEEC----SGGGCEEEEEETTSEEEEEECCTT
T ss_pred eeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEee----cCCCCEEEeecCCCeEEEEEecCC
Confidence 000000111122221 244566777777777777754432
Q ss_pred CCee-----eE------eeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCc
Q 021036 229 CNKF-----DK------VGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDA 297 (318)
Q Consensus 229 ~~~~-----~~------~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h 297 (318)
.... .. .....+|...|++++|+|++.+|++|+.||.|++||+.+++.........
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~------------- 293 (342)
T d1yfqa_ 227 GDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN------------- 293 (342)
T ss_dssp CCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS-------------
T ss_pred cceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCC-------------
Confidence 2110 00 01123466788999999999999999999999999999876553221111
Q ss_pred ceeeeEEEEcCCCcEEEEE
Q 021036 298 FVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 298 ~~~v~~v~~sp~~~~l~~~ 316 (318)
.+..++|+|++++++++
T Consensus 294 --~~~~~~~s~~~~~l~~a 310 (342)
T d1yfqa_ 294 --EDSVVKIACSDNILCLA 310 (342)
T ss_dssp --SSEEEEEEECSSEEEEE
T ss_pred --CCEEEEEEeCCCEEEEE
Confidence 34567888888888875
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=2e-23 Score=174.49 Aligned_cols=199 Identities=14% Similarity=0.125 Sum_probs=142.5
Q ss_pred CCCCcccc-cccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCC
Q 021036 68 LSSKKYPV-PQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNP 146 (318)
Q Consensus 68 ~~~~~~~v-~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~ 146 (318)
+++|..+| +|+. .++++|++|+.||+|+|||+.++ +.+..+.+|.++|++++| +++
T Consensus 8 L~GH~~~vitc~~--~~~~~l~tgs~Dg~i~vWd~~~~--------------~~~~~l~~H~~~V~~l~~-------s~~ 64 (355)
T d1nexb2 8 LRGHMTSVITCLQ--FEDNYVITGADDKMIRVYDSINK--------------KFLLQLSGHDGGVWALKY-------AHG 64 (355)
T ss_dssp EECCSSSCEEEEE--EETTEEEEEETTTEEEEEETTTT--------------EEEEEEECCSSCEEEEEE-------ETT
T ss_pred ECCcCCCcEEEEE--ECCCEEEEEeCCCeEEEEECCCC--------------cEEEEEECCCCCEEEEEE-------cCC
Confidence 56777775 4443 45689999999999999999884 567889999999999999 654
Q ss_pred CcEEEEEeCCCcEEEEECCCcceeeeeccccc-----------------------cccc---------------------
Q 021036 147 QVLLVTGSSDGSVRIWDGYIQELQKSAEAHCV-----------------------PFSL--------------------- 182 (318)
Q Consensus 147 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~-----------------------~~~~--------------------- 182 (318)
.+|++|+.|++|++|+....+.......... .+..
T Consensus 65 -~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~ 143 (355)
T d1nexb2 65 -GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV 143 (355)
T ss_dssp -TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEE
T ss_pred -CEEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccc
Confidence 4789999999999999876543321110000 0000
Q ss_pred ------------------------------c-------------------eeeeeecccceeEEEEeeccCCCCceEEEE
Q 021036 183 ------------------------------L-------------------KEVVTVNTVPISVLSLILPVQSPRLMLLAV 213 (318)
Q Consensus 183 ------------------------------~-------------------~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~ 213 (318)
+ ......+...+.++.++ +++..+++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 218 (355)
T d1nexb2 144 FHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYD-----HERKRCIS 218 (355)
T ss_dssp ESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE-----TTTTEEEE
T ss_pred eeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeecccccccccccc-----ccceeeec
Confidence 0 00112234456667777 88999999
Q ss_pred EeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCcccccc
Q 021036 214 GKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTD 293 (318)
Q Consensus 214 ~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 293 (318)
++.|+.|++| +.+++. .+..+.+|...|.+++|+ +++|++++.||.|++||+++...... .+..
T Consensus 219 ~~~d~~i~i~--d~~~~~--~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~--------- 282 (355)
T d1nexb2 219 ASMDTTIRIW--DLENGE--LMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFS-YHHT--------- 282 (355)
T ss_dssp EETTSCEEEE--ETTTCC--EEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEEE-EECT---------
T ss_pred ccccceEEee--eccccc--cccccccccccccccccc--cceeeeeecccccccccccccceecc-cccC---------
Confidence 9999999999 556665 677888999999999987 46899999999999999987654322 2221
Q ss_pred CCCcceeee-EEEEcCCCcEEEEEe
Q 021036 294 LPDAFVSCL-GMAVSPGNLVVAMVQ 317 (318)
Q Consensus 294 ~~~h~~~v~-~v~~sp~~~~l~~~~ 317 (318)
.+. ...|++++++|++|.
T Consensus 283 ------~~~~~~~~~~~~~~l~~g~ 301 (355)
T d1nexb2 283 ------NLSAITTFYVSDNILVSGS 301 (355)
T ss_dssp ------TCCCCCEEEECSSEEEEEE
T ss_pred ------CceEEEEEcCCCCEEEEEe
Confidence 223 345677888888763
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=4.4e-23 Score=168.39 Aligned_cols=224 Identities=12% Similarity=0.053 Sum_probs=144.0
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEE
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVS 97 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~ 97 (318)
++++||+.||+|++||+.++.. .|... +.++.+++. ..+++++.|++|+
T Consensus 22 s~l~sgs~Dg~v~~Wd~~~~~~---------~h~~~---V~~~~~~~~-------------------~~~~s~s~D~~v~ 70 (287)
T d1pgua2 22 NPLISGSYDGRIMEWSSSSMHQ---------DHSNL---IVSLDNSKA-------------------QEYSSISWDDTLK 70 (287)
T ss_dssp TTTEEEETTSCEEETTTTEEEC---------CCCSC---EEEEECCST-------------------TCCEEEETTTEEE
T ss_pred CcEEEEeCCCeEEEEECCCCCC---------CCCCC---EEEEEecCC-------------------CeEEEEeeccccc
Confidence 3599999999999999875421 12222 333555443 3567778888888
Q ss_pred EEEccCCcccccc-ccccCCce--------eEEeee----------ccccccEEEEEeeeecCCCCCCCcEEEEEeCC-C
Q 021036 98 LWRICVPKCYSVE-DCKVPTTA--------VLIGLF----------QAHNSWITSISLAVLSSDSSNPQVLLVTGSSD-G 157 (318)
Q Consensus 98 iw~~~~~~~~~~~-~~~~~~~~--------~~~~~~----------~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d-~ 157 (318)
+|++...+..... ......+. ..+..+ ..+...+. ++ .++++.+++++.| +
T Consensus 71 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-------~~~~~~~~v~~~~~~ 141 (287)
T d1pgua2 71 VNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGS--AV-------SLSQNYVAVGLEEGN 141 (287)
T ss_dssp ETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEE--EE-------EECSSEEEEEETTTS
T ss_pred cccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceee--ee-------eccCcceeeeccccc
Confidence 8877643211000 00000000 001111 11222222 22 3456677777766 4
Q ss_pred cEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeee
Q 021036 158 SVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGS 237 (318)
Q Consensus 158 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 237 (318)
.+++|++...+....+. ..+..++++++|+ |++.+|++|+.||.|++| +..+... ....
T Consensus 142 ~v~~~~~~~~~~~~~~~-------------~~~~~~v~~~~~s-----~~~~~l~~g~~dg~i~i~--d~~~~~~-~~~~ 200 (287)
T d1pgua2 142 TIQVFKLSDLEVSFDLK-------------TPLRAKPSYISIS-----PSETYIAAGDVMGKILLY--DLQSREV-KTSR 200 (287)
T ss_dssp CEEEEETTEEEEEEECS-------------SCCSSCEEEEEEC-----TTSSEEEEEETTSCEEEE--ETTTTEE-EECC
T ss_pred eeeeeeccccceeeeee-------------eccCCceeEEEec-----cCccccccccccccccce--eeccccc-cccc
Confidence 78999987655444332 2234579999999 999999999999999999 5555552 3344
Q ss_pred eecccCceeEEEEcCC----------CCEEEEecCCCcEEEEEecCCc-eeeeecCCCCCCccccccCCCcceeeeEEEE
Q 021036 238 YNAHDQVVTGLAWAFD----------GCCLYSCSQDNFVRSWIFHGNS-LSQVSIPTNTPGLQSCTDLPDAFVSCLGMAV 306 (318)
Q Consensus 238 ~~~h~~~v~~~~~~~~----------~~~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 306 (318)
+.+|...|.+++|+|. +.+|++|+.|++|++||++... ... .+.+|...|++++|
T Consensus 201 ~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~--------------~~~~h~~~V~~v~~ 266 (287)
T d1pgua2 201 WAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIK--------------ALNAHKDGVNNLLW 266 (287)
T ss_dssp SCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEE--------------ETTSSTTCEEEEEE
T ss_pred ccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEE--------------EeCCCCCCeEEEEE
Confidence 6789999999999875 4589999999999999987633 222 23347779999999
Q ss_pred cCCCcEEEEE
Q 021036 307 SPGNLVVAMV 316 (318)
Q Consensus 307 sp~~~~l~~~ 316 (318)
+|+++++.++
T Consensus 267 ~~~~~l~s~g 276 (287)
T d1pgua2 267 ETPSTLVSSG 276 (287)
T ss_dssp EETTEEEEEE
T ss_pred CCCCEEEEEE
Confidence 9998755544
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1.2e-22 Score=168.86 Aligned_cols=146 Identities=16% Similarity=0.246 Sum_probs=117.3
Q ss_pred CccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEE
Q 021036 83 WFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIW 162 (318)
Q Consensus 83 ~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iw 162 (318)
++.+|++|+.||.|++||++.+ +.+..+.+|...|.++.+ + +++|++++.|+.|++|
T Consensus 186 ~~~~l~s~~~dg~i~~~d~~~~--------------~~~~~~~~~~~~v~~~~~-------~--~~~l~s~s~d~~i~iw 242 (342)
T d2ovrb2 186 DGIHVVSGSLDTSIRVWDVETG--------------NCIHTLTGHQSLTSGMEL-------K--DNILVSGNADSTVKIW 242 (342)
T ss_dssp CSSEEEEEETTSCEEEEETTTC--------------CEEEEECCCCSCEEEEEE-------E--TTEEEEEETTSCEEEE
T ss_pred CCCEEEEEeCCCeEEEeecccc--------------eeeeEecccccceeEEec-------C--CCEEEEEcCCCEEEEE
Confidence 3589999999999999999884 466788899999999988 3 4689999999999999
Q ss_pred ECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeee----
Q 021036 163 DGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSY---- 238 (318)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~---- 238 (318)
|+...+....+..+.. |...+.++.+ +++++++|+.||.|++| |+++++ .+.++
T Consensus 243 d~~~~~~~~~~~~~~~-----------~~~~~~~~~~-------~~~~~~s~s~Dg~i~iw--d~~tg~--~i~~~~~~~ 300 (342)
T d2ovrb2 243 DIKTGQCLQTLQGPNK-----------HQSAVTCLQF-------NKNFVITSSDDGTVKLW--DLKTGE--FIRNLVTLE 300 (342)
T ss_dssp ETTTCCEEEEECSTTS-----------CSSCEEEEEE-------CSSEEEEEETTSEEEEE--ETTTCC--EEEEEEECT
T ss_pred ecccccccccccccce-----------eeeceeeccc-------CCCeeEEEcCCCEEEEE--ECCCCC--EEEEEeccc
Confidence 9998877766654332 2334555544 46799999999999999 566665 44444
Q ss_pred -ecccCceeEEEEcCCCCEEEEecCCCc----EEEEEecC
Q 021036 239 -NAHDQVVTGLAWAFDGCCLYSCSQDNF----VRSWIFHG 273 (318)
Q Consensus 239 -~~h~~~v~~~~~~~~~~~l~s~~~d~~----v~iwd~~~ 273 (318)
.+|...|++++|+|++.++++|+.||+ |++||...
T Consensus 301 ~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 301 SGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp TGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence 357888999999999999999999986 99999863
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.90 E-value=1e-22 Score=166.14 Aligned_cols=219 Identities=16% Similarity=0.165 Sum_probs=142.5
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhcccccccc----ceeeeeccccc--CCCCcccccccCCCCCccEEEE
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLH----SLAVAWSPVLR--LSSKKYPVPQNGSSNWFSILAV 89 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~----~~~~~w~p~~~--~~~~~~~v~~~~~s~~~~~l~~ 89 (318)
+...+++++.|+++++|++...+.............+.... .....|..... ............++++++.+++
T Consensus 56 ~~~~~~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 135 (287)
T d1pgua2 56 KAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAV 135 (287)
T ss_dssp STTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEE
T ss_pred CCCeEEEEeeccccccccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccCcceee
Confidence 44568999999999999887644322221111111111000 00122222111 0000111222345556677777
Q ss_pred ecCCC-cEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcc
Q 021036 90 GGRSG-KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQE 168 (318)
Q Consensus 90 g~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 168 (318)
++.|+ .|++|++...+ ........|...|++++| ++++.+|++|+.||.|++||+.+++
T Consensus 136 ~~~~~~~v~~~~~~~~~-------------~~~~~~~~~~~~v~~~~~-------s~~~~~l~~g~~dg~i~i~d~~~~~ 195 (287)
T d1pgua2 136 GLEEGNTIQVFKLSDLE-------------VSFDLKTPLRAKPSYISI-------SPSETYIAAGDVMGKILLYDLQSRE 195 (287)
T ss_dssp EETTTSCEEEEETTEEE-------------EEEECSSCCSSCEEEEEE-------CTTSSEEEEEETTSCEEEEETTTTE
T ss_pred eccccceeeeeeccccc-------------eeeeeeeccCCceeEEEe-------ccCccccccccccccccceeecccc
Confidence 77765 79999987532 122223457789999999 8999999999999999999998876
Q ss_pred eeeeecccccccccceeeeeecccceeEEEEeecc-----CCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccC
Q 021036 169 LQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPV-----QSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQ 243 (318)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-----~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~ 243 (318)
...... ..|..+|.+++|++.. ..+++.+|++|+.|+.|++|++ +... +.+..+.+|..
T Consensus 196 ~~~~~~-------------~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~--~~~~-~~~~~~~~h~~ 259 (287)
T d1pgua2 196 VKTSRW-------------AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSV--KRPM-KIIKALNAHKD 259 (287)
T ss_dssp EEECCS-------------CCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEES--SCTT-CCEEETTSSTT
T ss_pred cccccc-------------cccccccceeeecccccccccccCCCCeeEeecCCCeEEEEEC--CCCC-eEEEEeCCCCC
Confidence 543211 2345588899887211 0135678999999999999954 3322 25566778999
Q ss_pred ceeEEEEcCCCCEEEEecCCCcEEEEEe
Q 021036 244 VVTGLAWAFDGCCLYSCSQDNFVRSWIF 271 (318)
Q Consensus 244 ~v~~~~~~~~~~~l~s~~~d~~v~iwd~ 271 (318)
.|++++|+|++ .|++++.|++|++|++
T Consensus 260 ~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 260 GVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp CEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred CeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence 99999999986 5889999999999986
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.89 E-value=5e-22 Score=171.51 Aligned_cols=242 Identities=12% Similarity=-0.004 Sum_probs=159.3
Q ss_pred eEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEEE
Q 021036 20 TVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLW 99 (318)
Q Consensus 20 ~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw 99 (318)
+++++.|++|++||+.+++.+..+.... . +..++++|++ ++|++++.||.|++|
T Consensus 35 ~V~~~~dg~v~vwD~~t~~~~~~l~~g~-----~---~~~vafSPDG------------------k~l~~~~~d~~v~vw 88 (426)
T d1hzua2 35 SVTLRDAGQIALVDGDSKKIVKVIDTGY-----A---VHISRMSASG------------------RYLLVIGRDARIDMI 88 (426)
T ss_dssp EEEETTTTEEEEEETTTCSEEEEEECCS-----S---EEEEEECTTS------------------CEEEEEETTSEEEEE
T ss_pred EEEEcCCCEEEEEECCCCcEEEEEeCCC-----C---eeEEEECCCC------------------CEEEEEeCCCCEEEE
Confidence 5888999999999999999877765421 1 2236777776 999999999999999
Q ss_pred EccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEE-eCCCcEEEEECCCcceeeeeccccc
Q 021036 100 RICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTG-SSDGSVRIWDGYIQELQKSAEAHCV 178 (318)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~-~~d~~v~iwd~~~~~~~~~~~~~~~ 178 (318)
|+.+++... ...+....+|...+.++.| +++|++|+++ ..++.+++||..++.....+..+..
T Consensus 89 d~~t~~~~~---------~~~i~~~~~~~~~~~s~~~-------spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~ 152 (426)
T d1hzua2 89 DLWAKEPTK---------VAEIKIGIEARSVESSKFK-------GYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM 152 (426)
T ss_dssp ETTSSSCEE---------EEEEECCSEEEEEEECCST-------TCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEE
T ss_pred EccCCceeE---------EEEEeCCCCCcceEEeeee-------cCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCC
Confidence 999876321 1122333467777788888 8999887554 5789999999998876655433221
Q ss_pred ccccc-----------------------------------------eeeeeecccceeEEEEeeccCCCCceEEEEEe-C
Q 021036 179 PFSLL-----------------------------------------KEVVTVNTVPISVLSLILPVQSPRLMLLAVGK-G 216 (318)
Q Consensus 179 ~~~~~-----------------------------------------~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~-~ 216 (318)
..... ......+...+..+.++ |++++++++. .
T Consensus 153 ~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~~a~~~ 227 (426)
T d1hzua2 153 TVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWD-----SSHRYFMTAANN 227 (426)
T ss_dssp CSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEEC-----TTSCEEEEEETT
T ss_pred CccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeEC-----CCCcEEEeeeec
Confidence 11000 00112334455677777 7777666654 3
Q ss_pred CCcEEEeee-----------------------------------------------ccC---CCeeeEeeeeecccCcee
Q 021036 217 SGSFDLWKC-----------------------------------------------DIS---CNKFDKVGSYNAHDQVVT 246 (318)
Q Consensus 217 dg~i~vw~~-----------------------------------------------~~~---~~~~~~~~~~~~h~~~v~ 246 (318)
+..+.+++. ... ...++....+.+|...+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~ 307 (426)
T d1hzua2 228 SNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSL 307 (426)
T ss_dssp CSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCC
T ss_pred ccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCcee
Confidence 333444431 000 001124456778888899
Q ss_pred EEEEcCCCCEEEE-------ecCCCcEEEEEecCCcee-eeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEE
Q 021036 247 GLAWAFDGCCLYS-------CSQDNFVRSWIFHGNSLS-QVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVA 314 (318)
Q Consensus 247 ~~~~~~~~~~l~s-------~~~d~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~ 314 (318)
.++|+|++++|++ ++.|++|++||+.++... ++.... ....+..|...|..++|||||++|+
T Consensus 308 ~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~------~~~~~~~~~~rv~~~~fSpDGk~i~ 377 (426)
T d1hzua2 308 FIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIA------EWADLGEGAKRVVQPEYNKRGDEVW 377 (426)
T ss_dssp CEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHH------HHHCCCSSCCCEEEEEECSSSSEEE
T ss_pred EEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccc------hhcccCCCCccEEEEEECCCCCEEE
Confidence 9999999999994 567899999999886543 221110 1123344566899999999998763
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=7.1e-21 Score=154.42 Aligned_cols=193 Identities=18% Similarity=0.242 Sum_probs=136.1
Q ss_pred CcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEE
Q 021036 71 KKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLL 150 (318)
Q Consensus 71 ~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l 150 (318)
|...|+|+++ ++++|++|+.||+|+|||++++ +.++.+.+|.+.|.+++| ++++|
T Consensus 14 ~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~--------------~~~~~l~~H~~~V~~v~~---------~~~~l 68 (293)
T d1p22a2 14 TSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTL--------------ECKRILTGHTGSVLCLQY---------DERVI 68 (293)
T ss_dssp SCCCEEEEEC--CSSEEEEEESSSCEEEEESSSC--------------CEEEEECCCSSCEEEEEC---------CSSEE
T ss_pred CCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCC--------------cEEEEEecCCCCEeeeec---------cccee
Confidence 3444555433 4599999999999999999984 467789999999999988 35799
Q ss_pred EEEeCCCcEEEEECCCcceeeeeccccccccc-----------------------------ceeeeeecccceeEEEEee
Q 021036 151 VTGSSDGSVRIWDGYIQELQKSAEAHCVPFSL-----------------------------LKEVVTVNTVPISVLSLIL 201 (318)
Q Consensus 151 ~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~v~~l~~~~ 201 (318)
++|+.|+.|++|++..+............... .......+...+..+.+.
T Consensus 69 ~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~- 147 (293)
T d1p22a2 69 ITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD- 147 (293)
T ss_dssp EEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE-
T ss_pred ecccccccccccccccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceec-
Confidence 99999999999999887655433221110000 001223344455555544
Q ss_pred ccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeec
Q 021036 202 PVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSI 281 (318)
Q Consensus 202 ~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 281 (318)
...+++++.|+.|++| +.++.+ .+..+.++...+..+.++ +.++++++.|++|++||+++........
T Consensus 148 ------~~~~~~~s~d~~i~~~--d~~~~~--~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 215 (293)
T d1p22a2 148 ------DKYIVSASGDRTIKVW--NTSTCE--FVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLE 215 (293)
T ss_dssp ------TTEEEEEETTSEEEEE--ETTTCC--EEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred ------ccccccccCCCceeee--cCCCCc--EEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeec
Confidence 4577888999999999 566665 677788888888887765 5689999999999999998866554322
Q ss_pred CCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 282 PTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 282 ~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
. |...+. .+++++.+|++|.
T Consensus 216 ~--------------~~~~v~--~~~~~~~~l~sg~ 235 (293)
T d1p22a2 216 G--------------HEELVR--CIRFDNKRIVSGA 235 (293)
T ss_dssp C--------------CSSCEE--EEECCSSEEEEEE
T ss_pred c--------------cceeee--eccccceEEEEEc
Confidence 1 222443 4566777887764
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.88 E-value=1.6e-22 Score=169.87 Aligned_cols=237 Identities=8% Similarity=-0.045 Sum_probs=164.3
Q ss_pred CCCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeeccccc------------------------
Q 021036 12 MKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLR------------------------ 67 (318)
Q Consensus 12 ~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~------------------------ 67 (318)
+.|.+...+++++ ++.+.+||+.++...+. +|... +.+++|+|++.
T Consensus 10 fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~------~~~~~---v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~ 79 (360)
T d1k32a3 10 FSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV------PEPLR---IRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE 79 (360)
T ss_dssp EEECGGGCEEEEE-TTEEEEECTTSSBEEEC------SCCSC---EEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred ccCCCCCEEEEEE-CCeEEEEECCCCcEEEc------cCCCC---EEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE
Confidence 4444556666655 57999999988765432 24443 44578888763
Q ss_pred -CCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCC
Q 021036 68 -LSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNP 146 (318)
Q Consensus 68 -~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~ 146 (318)
+..|...|.+++++|++++|++++.++.+++|+..+++ ....+..|...+.+++| +++
T Consensus 80 ~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~-------spd 138 (360)
T d1k32a3 80 KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK--------------PTVIERSREAMITDFTI-------SDN 138 (360)
T ss_dssp ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC--------------EEEEEECSSSCCCCEEE-------CTT
T ss_pred EeeCCCceEEeeeecccccccceeccccccccccccccc--------------eeeeeecccccccchhh-------ccc
Confidence 44677889999999999999999999999999998854 45667788889999999 999
Q ss_pred CcEEEEEe----------CCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeC
Q 021036 147 QVLLVTGS----------SDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKG 216 (318)
Q Consensus 147 ~~~l~s~~----------~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~ 216 (318)
|++|+.+. .++.+++||+.+++...... +...+..+.|+ |+|+.|++++.
T Consensus 139 g~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~---------------~~~~~~~~~~s-----pdg~~l~~~s~ 198 (360)
T d1k32a3 139 SRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATT---------------ENSHDYAPAFD-----ADSKNLYYLSY 198 (360)
T ss_dssp SCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSC---------------SSSBEEEEEEC-----TTSCEEEEEES
T ss_pred eeeeeeeccccccceeeccccceeeeccccCceeeecc---------------ccccccccccc-----CCCCEEEEEeC
Confidence 99998653 44569999998876554333 22367788898 99999999999
Q ss_pred CCcEEEeeeccCCCe---eeEeeee----------------------------------------------ecccCceeE
Q 021036 217 SGSFDLWKCDISCNK---FDKVGSY----------------------------------------------NAHDQVVTG 247 (318)
Q Consensus 217 dg~i~vw~~~~~~~~---~~~~~~~----------------------------------------------~~h~~~v~~ 247 (318)
++.+.+|+....... ......+ ..+.+.+..
T Consensus 199 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (360)
T d1k32a3 199 RSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILI 278 (360)
T ss_dssp CCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEE
T ss_pred CCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceE
Confidence 999999952111000 0000000 011111122
Q ss_pred EEEcCCC---CEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 248 LAWAFDG---CCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 248 ~~~~~~~---~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
+.+.+.+ .++++++.++.|++||+.+++... |.+.|.+++|+|||++|+++.
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~------------------~~~~v~~~~~SpDG~~l~~~~ 333 (360)
T d1k32a3 279 YSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE------------------VKNNLTDLRLSADRKTVMVRK 333 (360)
T ss_dssp EECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE------------------EEEEEEEEEECTTSCEEEEEE
T ss_pred EEEEecCCCeeEEEecCCCCEEEEEECCCCeEEE------------------ecCCcCEEEECCCCCEEEEEE
Confidence 2222222 245566678899999988766543 335789999999999999874
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.86 E-value=1.6e-20 Score=157.40 Aligned_cols=176 Identities=9% Similarity=0.006 Sum_probs=137.0
Q ss_pred CCCC-CccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCC
Q 021036 79 GSSN-WFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDG 157 (318)
Q Consensus 79 ~~s~-~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~ 157 (318)
+||| +|+++|+++ +|.|++|+.+++. ..+ + +|...|.+++| +|+|++|++++.+.
T Consensus 9 ~fSP~dG~~~a~~~-~g~v~v~d~~~~~--------------~~~-~-~~~~~v~~~~~-------spDg~~l~~~~~~~ 64 (360)
T d1k32a3 9 DFSPLDGDLIAFVS-RGQAFIQDVSGTY--------------VLK-V-PEPLRIRYVRR-------GGDTKVAFIHGTRE 64 (360)
T ss_dssp EEEECGGGCEEEEE-TTEEEEECTTSSB--------------EEE-C-SCCSCEEEEEE-------CSSSEEEEEEEETT
T ss_pred cccCCCCCEEEEEE-CCeEEEEECCCCc--------------EEE-c-cCCCCEEEEEE-------CCCCCEEEEEEcCC
Confidence 3444 459999886 5799999998754 222 2 68999999999 99999998877553
Q ss_pred --cEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEe
Q 021036 158 --SVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKV 235 (318)
Q Consensus 158 --~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 235 (318)
.|++||..+++.... .. +...+.+++|+ |++++|++++.++.+++| +..+.+ ..
T Consensus 65 g~~v~v~d~~~~~~~~~-~~--------------~~~~v~~~~~s-----pdg~~l~~~~~~~~~~~~--~~~~~~--~~ 120 (360)
T d1k32a3 65 GDFLGIYDYRTGKAEKF-EE--------------NLGNVFAMGVD-----RNGKFAVVANDRFEIMTV--DLETGK--PT 120 (360)
T ss_dssp EEEEEEEETTTCCEEEC-CC--------------CCCSEEEEEEC-----TTSSEEEEEETTSEEEEE--ETTTCC--EE
T ss_pred CCEEEEEECCCCcEEEe-eC--------------CCceEEeeeec-----ccccccceeccccccccc--cccccc--ee
Confidence 799999998765433 22 34488999999 999999999999999999 555655 45
Q ss_pred eeeecccCceeEEEEcCCCCEEEEe----------cCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEE
Q 021036 236 GSYNAHDQVVTGLAWAFDGCCLYSC----------SQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMA 305 (318)
Q Consensus 236 ~~~~~h~~~v~~~~~~~~~~~l~s~----------~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 305 (318)
..+..|...+.+++|+|+|++|+.+ ..++.+++||+.+++...+..+. ..+..++
T Consensus 121 ~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~---------------~~~~~~~ 185 (360)
T d1k32a3 121 VIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTEN---------------SHDYAPA 185 (360)
T ss_dssp EEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSS---------------SBEEEEE
T ss_pred eeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecccc---------------ccccccc
Confidence 5667788899999999999999854 34567999999887665543322 3678899
Q ss_pred EcCCCcEEEEEe
Q 021036 306 VSPGNLVVAMVQ 317 (318)
Q Consensus 306 ~sp~~~~l~~~~ 317 (318)
|+|||++|+++.
T Consensus 186 ~spdg~~l~~~s 197 (360)
T d1k32a3 186 FDADSKNLYYLS 197 (360)
T ss_dssp ECTTSCEEEEEE
T ss_pred ccCCCCEEEEEe
Confidence 999999998763
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.84 E-value=1.8e-20 Score=155.14 Aligned_cols=218 Identities=10% Similarity=0.092 Sum_probs=135.2
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCc
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGK 95 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~ 95 (318)
+...+++||.|++|++||++++.....+.. ...|... +.+++|+|.. +.+|++|+.||.
T Consensus 22 ~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~-~~~h~~~---V~~v~f~~~~-----------------~~~l~sg~~d~~ 80 (342)
T d1yfqa_ 22 SKSLLLITSWDGSLTVYKFDIQAKNVDLLQ-SLRYKHP---LLCCNFIDNT-----------------DLQIYVGTVQGE 80 (342)
T ss_dssp GGTEEEEEETTSEEEEEEEETTTTEEEEEE-EEECSSC---EEEEEEEESS-----------------SEEEEEEETTSC
T ss_pred CCCEEEEEECCCeEEEEEccCCCcceEEEE-ecCCCCC---EEEEEEeCCC-----------------CCEEEEcccccc
Confidence 345689999999999999987654333322 2234444 4557787765 468899999999
Q ss_pred EEEEEccCCccccccccccC---------------------------------CceeEEeeeccc--cccEEEEEeeeec
Q 021036 96 VSLWRICVPKCYSVEDCKVP---------------------------------TTAVLIGLFQAH--NSWITSISLAVLS 140 (318)
Q Consensus 96 i~iw~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~h--~~~v~~~~~~p~~ 140 (318)
|++|+...+........... ...........+ ........+
T Consensus 81 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 156 (342)
T d1yfqa_ 81 ILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTM---- 156 (342)
T ss_dssp EEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEE----
T ss_pred eeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeee----
Confidence 99999876553321110000 000000111111 111223333
Q ss_pred CCCCCCCcEEEEEeCCCcEEEEECCCcceeeeeccc----------------cccc---------ccc------------
Q 021036 141 SDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAH----------------CVPF---------SLL------------ 183 (318)
Q Consensus 141 ~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~----------------~~~~---------~~~------------ 183 (318)
...+..+++++.|+.|++||+...+........ ...+ ...
T Consensus 157 ---~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~ 233 (342)
T d1yfqa_ 157 ---DTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSS 233 (342)
T ss_dssp ---EECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCT
T ss_pred ---eccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeecc
Confidence 456678999999999999998765432211000 0000 000
Q ss_pred ----------eeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCC
Q 021036 184 ----------KEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFD 253 (318)
Q Consensus 184 ----------~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 253 (318)
......+...+++++|+ |++.+|++|+.||.|++| |..+++ .+..+..+ ..+..++|+|+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~v~~l~~s-----p~~~~lasg~~Dg~v~vW--D~~~~~--~l~~~~~~-~~~~~~~~s~~ 303 (342)
T d1yfqa_ 234 KRFAFRCHRLNLKDTNLAYPVNSIEFS-----PRHKFLYTAGSDGIISCW--NLQTRK--KIKNFAKF-NEDSVVKIACS 303 (342)
T ss_dssp TCEEEECCCCCTTCCSSCCCEEEEEEC-----TTTCCEEEEETTSCEEEE--ETTTTE--EEEECCCC-SSSEEEEEEEC
T ss_pred ccceeeeeeeccCCCcccccceeEEec-----CCccEEEEECCCCEEEEE--ECCCCc--EEEEecCC-CCCEEEEEEeC
Confidence 00012345578899999 999999999999999999 555665 55566433 34456788899
Q ss_pred CCEEEEecCCCcEEEEEe
Q 021036 254 GCCLYSCSQDNFVRSWIF 271 (318)
Q Consensus 254 ~~~l~s~~~d~~v~iwd~ 271 (318)
++++++++.|+++++|..
T Consensus 304 ~~~l~~a~sdd~~~~~~~ 321 (342)
T d1yfqa_ 304 DNILCLATSDDTFKTNAA 321 (342)
T ss_dssp SSEEEEEEECTHHHHCSS
T ss_pred CCEEEEEEcCCcEEEeee
Confidence 999999999998887754
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.80 E-value=7.7e-18 Score=139.42 Aligned_cols=216 Identities=13% Similarity=0.039 Sum_probs=146.9
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEE-EEecCCCcE
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSIL-AVGGRSGKV 96 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l-~~g~~dg~i 96 (318)
..+++++.|++|.+||+++++.+..+.....+ .. +..++++|++ +++ ++++.++.|
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~--~~---~~~i~~spDg------------------~~l~v~~~~~~~v 58 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAG--PT---PMVPMVAPGG------------------RIAYATVNKSESL 58 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCT--TC---CCCEEECTTS------------------SEEEEEETTTTEE
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCC--CC---ccEEEECCCC------------------CEEEEEECCCCeE
Confidence 35799999999999999998877666543211 11 2236777776 776 577889999
Q ss_pred EEEEccCCccccccccccCCceeEEeeeccc-----cccEEEEEeeeecCCCCCCCcEEEEEe------------CCCcE
Q 021036 97 SLWRICVPKCYSVEDCKVPTTAVLIGLFQAH-----NSWITSISLAVLSSDSSNPQVLLVTGS------------SDGSV 159 (318)
Q Consensus 97 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~p~~~~~~~~~~~l~s~~------------~d~~v 159 (318)
.+||+.+++ .+..+..+ ...+..++| ++++++++++. .+..+
T Consensus 59 ~v~D~~t~~--------------~~~~~~~~~~~~~~~~~~~v~~-------s~dg~~l~~~~~~~~~~~~~~~~~~~~~ 117 (337)
T d1pbyb_ 59 VKIDLVTGE--------------TLGRIDLSTPEERVKSLFGAAL-------SPDGKTLAIYESPVRLELTHFEVQPTRV 117 (337)
T ss_dssp EEEETTTCC--------------EEEEEECCBTTEEEECTTCEEE-------CTTSSEEEEEEEEEEECSSCEEECCCEE
T ss_pred EEEECCCCc--------------EEEEEecCCCcccccceeeEEE-------cCCCcEEEEeecCCcceeeeccccccce
Confidence 999999865 33344332 234557889 89999888876 45778
Q ss_pred EEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeecc------------
Q 021036 160 RIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDI------------ 227 (318)
Q Consensus 160 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~------------ 227 (318)
.+||..+++....+.... .+..++++ |+|+++++++.+ +.+|+...
T Consensus 118 ~~~d~~~~~~~~~~~~~~---------------~~~~~~~s-----~dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~ 175 (337)
T d1pbyb_ 118 ALYDAETLSRRKAFEAPR---------------QITMLAWA-----RDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSW 175 (337)
T ss_dssp EEEETTTTEEEEEEECCS---------------SCCCEEEC-----TTSSCEEEESSS--EEEEETTTTEEEEEECSTTT
T ss_pred eeccccCCeEEEeccccC---------------CceEEEEc-----CCCCEEEEEcCC--cceeeeecCcEEEEeecCCc
Confidence 889998887776655332 46678888 888888887643 45564210
Q ss_pred ---------------------------------------------------CCCeeeEeeeeecccCceeEEEEcCCCCE
Q 021036 228 ---------------------------------------------------SCNKFDKVGSYNAHDQVVTGLAWAFDGCC 256 (318)
Q Consensus 228 ---------------------------------------------------~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 256 (318)
..+.. ....+..+...+..+.++|++.+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 254 (337)
T d1pbyb_ 176 EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM-AMREVRIMDVFYFSTAVNPAKTR 254 (337)
T ss_dssp TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE-EEEEEEECSSCEEEEEECTTSSE
T ss_pred cccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcE-EEEEecCCCcceEEEEecccceE
Confidence 01110 01112234445566778888887
Q ss_pred EEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 257 LYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 257 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
++.+ ++.|++||+.+++.......+. .+.+++|+|||++|+++.
T Consensus 255 ~~~~--~~~i~v~d~~~~~~~~~~~~~~---------------~~~~~~~s~dG~~l~v~~ 298 (337)
T d1pbyb_ 255 AFGA--YNVLESFDLEKNASIKRVPLPH---------------SYYSVNVSTDGSTVWLGG 298 (337)
T ss_dssp EEEE--ESEEEEEETTTTEEEEEEECSS---------------CCCEEEECTTSCEEEEES
T ss_pred EEEc--cccEEEEECCCCcEEEEEcCCC---------------CEEEEEECCCCCEEEEEe
Confidence 7655 5899999999887665443332 568999999999998874
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.80 E-value=1.1e-17 Score=144.22 Aligned_cols=205 Identities=13% Similarity=-0.020 Sum_probs=145.0
Q ss_pred eEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEEE
Q 021036 20 TVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLW 99 (318)
Q Consensus 20 ~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw 99 (318)
+++.+.|+++.+||..+++++..+.... . +..++|+|++ +++++++.||.|++|
T Consensus 35 ~v~~~d~g~v~v~D~~t~~v~~~~~~g~-----~---~~~v~fSpDG------------------~~l~~~s~dg~v~~~ 88 (432)
T d1qksa2 35 SVTLRDAGQIALIDGSTYEIKTVLDTGY-----A---VHISRLSASG------------------RYLFVIGRDGKVNMI 88 (432)
T ss_dssp EEEETTTTEEEEEETTTCCEEEEEECSS-----C---EEEEEECTTS------------------CEEEEEETTSEEEEE
T ss_pred EEEEcCCCEEEEEECCCCcEEEEEeCCC-----C---eeEEEECCCC------------------CEEEEEcCCCCEEEE
Confidence 5899999999999999999877775421 1 2236777777 999999999999999
Q ss_pred EccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEE-EEEeCCCcEEEEECCCcceeeeeccccc
Q 021036 100 RICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLL-VTGSSDGSVRIWDGYIQELQKSAEAHCV 178 (318)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l-~s~~~d~~v~iwd~~~~~~~~~~~~~~~ 178 (318)
|+.+++... ...+.....|.+.+.+..| +++|++| ++++.+++|++||..+++....+..+..
T Consensus 89 d~~t~~~~~---------~~~i~~~~~~~~~~~s~~~-------SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~ 152 (432)
T d1qksa2 89 DLWMKEPTT---------VAEIKIGSEARSIETSKME-------GWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGM 152 (432)
T ss_dssp ETTSSSCCE---------EEEEECCSEEEEEEECCST-------TCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEE
T ss_pred EeeCCCceE---------EEEEecCCCCCCeEEeccc-------CCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCc
Confidence 998865211 1123333456666777777 8999876 6788899999999999998887765443
Q ss_pred ccccceeeeeecccceeEEEEeeccCCCCceEE-EEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEE
Q 021036 179 PFSLLKEVVTVNTVPISVLSLILPVQSPRLMLL-AVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCL 257 (318)
Q Consensus 179 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 257 (318)
.... ...........+.++ +++..+ ++...++.|.+| +..+.+...+..+ .+...+..++|+|+|+++
T Consensus 153 ~~~~---~~~~~~~~~~~v~~s-----~dg~~~~vs~~~~~~i~~~--d~~~~~~~~~~~i-~~g~~~~~~~~spdg~~~ 221 (432)
T d1qksa2 153 TYDE---QEYHPEPRVAAILAS-----HYRPEFIVNVKETGKILLV--DYTDLNNLKTTEI-SAERFLHDGGLDGSHRYF 221 (432)
T ss_dssp CTTT---CCEESCCCEEEEEEC-----SSSSEEEEEETTTTEEEEE--ETTCSSEEEEEEE-ECCSSEEEEEECTTSCEE
T ss_pred cccc---eeccCCCceeEEEEC-----CCCCEEEEEEccCCeEEEE--EccCCCcceEEEE-cccCccccceECCCCCEE
Confidence 2111 112234456677888 777655 556678999999 5555443233343 345678899999999977
Q ss_pred EEecC-CCcEEEEEecCCcee
Q 021036 258 YSCSQ-DNFVRSWIFHGNSLS 277 (318)
Q Consensus 258 ~s~~~-d~~v~iwd~~~~~~~ 277 (318)
++++. +..+.++|..+++..
T Consensus 222 ~va~~~~~~v~v~d~~~~~~~ 242 (432)
T d1qksa2 222 ITAANARNKLVVIDTKEGKLV 242 (432)
T ss_dssp EEEEGGGTEEEEEETTTTEEE
T ss_pred EEeccccceEEEeecccceEE
Confidence 66654 567889998776554
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.79 E-value=1.1e-16 Score=130.35 Aligned_cols=223 Identities=16% Similarity=0.117 Sum_probs=147.2
Q ss_pred ceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEE-EEecCCCcEE
Q 021036 19 PTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSIL-AVGGRSGKVS 97 (318)
Q Consensus 19 ~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l-~~g~~dg~i~ 97 (318)
..++++.|++|.+||+.+++.+..+.... . ...++++|++ ++| ++++.++.|+
T Consensus 4 ~yV~~~~~~~v~v~D~~t~~~~~~i~~g~-----~---p~~va~spdG------------------~~l~v~~~~~~~i~ 57 (301)
T d1l0qa2 4 AYIANSESDNISVIDVTSNKVTATIPVGS-----N---PMGAVISPDG------------------TKVYVANAHSNDVS 57 (301)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSS-----S---EEEEEECTTS------------------SEEEEEEGGGTEEE
T ss_pred EEEEECCCCEEEEEECCCCeEEEEEECCC-----C---ceEEEEeCCC------------------CEEEEEECCCCEEE
Confidence 35788999999999999998776665421 1 1237777777 766 5777899999
Q ss_pred EEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEE-EEeCCCcEEEEECCCcceeeeeccc
Q 021036 98 LWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLV-TGSSDGSVRIWDGYIQELQKSAEAH 176 (318)
Q Consensus 98 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~-s~~~d~~v~iwd~~~~~~~~~~~~~ 176 (318)
+||+.+++ .+..+..+. .+..+.| ++++..++ ++..++.+.+|+..+++....+..+
T Consensus 58 v~d~~t~~--------------~~~~~~~~~-~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (301)
T d1l0qa2 58 IIDTATNN--------------VIATVPAGS-SPQGVAV-------SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG 115 (301)
T ss_dssp EEETTTTE--------------EEEEEECSS-SEEEEEE-------CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred EEECCCCc--------------eeeeeeccc-ccccccc-------ccccccccccccccceeeecccccceeeeecccc
Confidence 99999854 556666655 4688999 77776554 5556789999999988776655433
Q ss_pred ccccccce---------------------------eeeeecccceeEEEEeeccCCCCceEEEEEeCC-CcEEEeeeccC
Q 021036 177 CVPFSLLK---------------------------EVVTVNTVPISVLSLILPVQSPRLMLLAVGKGS-GSFDLWKCDIS 228 (318)
Q Consensus 177 ~~~~~~~~---------------------------~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~d-g~i~vw~~~~~ 228 (318)
..+..... .........+..+.++ |++..+++++.+ +.+.+| ...
T Consensus 116 ~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~--~~~ 188 (301)
T d1l0qa2 116 KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVT-----PDGTKVYVANFDSMSISVI--DTV 188 (301)
T ss_dssp SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEEC-----TTSSEEEEEETTTTEEEEE--ETT
T ss_pred ccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEee-----ccccceeeecccccccccc--ccc
Confidence 22111000 0011223345677777 777777776655 445555 333
Q ss_pred CCeeeEeeeeecccCceeEEEEcCCCCEEEEec---CCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEE
Q 021036 229 CNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCS---QDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMA 305 (318)
Q Consensus 229 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~---~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 305 (318)
..+ ...... ....+..++|++++..++.++ .++.|++||+.+++........ ..+.+++
T Consensus 189 ~~~--~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~---------------~~~~~va 250 (301)
T d1l0qa2 189 TNS--VIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG---------------PDPAGIA 250 (301)
T ss_dssp TTE--EEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC---------------SSEEEEE
T ss_pred cee--eeeccc-ccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCC---------------CCEEEEE
Confidence 433 233333 345567899999999776543 4478999999987765432222 2568999
Q ss_pred EcCCCcEEE
Q 021036 306 VSPGNLVVA 314 (318)
Q Consensus 306 ~sp~~~~l~ 314 (318)
|+|||++|+
T Consensus 251 ~spdg~~l~ 259 (301)
T d1l0qa2 251 VTPDGKKVY 259 (301)
T ss_dssp ECTTSSEEE
T ss_pred EeCCCCEEE
Confidence 999999764
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.75 E-value=6.7e-17 Score=139.17 Aligned_cols=178 Identities=7% Similarity=-0.095 Sum_probs=125.7
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEEC
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDG 164 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~ 164 (318)
-++++.+.||+|.|||.++++ .+..+..+ ..+..++| +|+|++|++++.|++|++||+
T Consensus 33 ~~~v~~~d~g~v~v~D~~t~~--------------v~~~~~~g-~~~~~v~f-------SpDG~~l~~~s~dg~v~~~d~ 90 (432)
T d1qksa2 33 LFSVTLRDAGQIALIDGSTYE--------------IKTVLDTG-YAVHISRL-------SASGRYLFVIGRDGKVNMIDL 90 (432)
T ss_dssp EEEEEETTTTEEEEEETTTCC--------------EEEEEECS-SCEEEEEE-------CTTSCEEEEEETTSEEEEEET
T ss_pred EEEEEEcCCCEEEEEECCCCc--------------EEEEEeCC-CCeeEEEE-------CCCCCEEEEEcCCCCEEEEEe
Confidence 446899999999999999954 56677666 46899999 999999999999999999999
Q ss_pred CCcceeee--ecccccccccceeeeeecccceeEEEEeeccCCCCceEE-EEEeCCCcEEEeeeccCCCeeeEeeeeec-
Q 021036 165 YIQELQKS--AEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLL-AVGKGSGSFDLWKCDISCNKFDKVGSYNA- 240 (318)
Q Consensus 165 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~~~~- 240 (318)
.+++.... +.... .+...+.+..|+ |||++| ++++.++.|++| |..+++ .+..+..
T Consensus 91 ~t~~~~~~~~i~~~~-----------~~~~~~~s~~~S-----pDG~~l~vs~~~~~~v~i~--d~~t~~--~~~~~~~~ 150 (432)
T d1qksa2 91 WMKEPTTVAEIKIGS-----------EARSIETSKMEG-----WEDKYAIAGAYWPPQYVIM--DGETLE--PKKIQSTR 150 (432)
T ss_dssp TSSSCCEEEEEECCS-----------EEEEEEECCSTT-----CTTTEEEEEEEETTEEEEE--ETTTCC--EEEEEECC
T ss_pred eCCCceEEEEEecCC-----------CCCCeEEecccC-----CCCCEEEEEcCCCCeEEEE--eCcccc--ceeeeccC
Confidence 88764332 22111 111223333344 899875 678889999999 555655 3333332
Q ss_pred ----------ccCceeEEEEcCCCCEE-EEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCC
Q 021036 241 ----------HDQVVTGLAWAFDGCCL-YSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPG 309 (318)
Q Consensus 241 ----------h~~~v~~~~~~~~~~~l-~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 309 (318)
+......+.++|+|..+ ++...++.|.+||..+.+...+..-+. ...+..++|+||
T Consensus 151 ~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~-------------g~~~~~~~~spd 217 (432)
T d1qksa2 151 GMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISA-------------ERFLHDGGLDGS 217 (432)
T ss_dssp EECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEEC-------------CSSEEEEEECTT
T ss_pred CccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcc-------------cCccccceECCC
Confidence 34456678899998864 567778999999988755433221111 125689999999
Q ss_pred CcEEEEEe
Q 021036 310 NLVVAMVQ 317 (318)
Q Consensus 310 ~~~l~~~~ 317 (318)
|++++++.
T Consensus 218 g~~~~va~ 225 (432)
T d1qksa2 218 HRYFITAA 225 (432)
T ss_dssp SCEEEEEE
T ss_pred CCEEEEec
Confidence 99887763
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.70 E-value=1.6e-15 Score=125.72 Aligned_cols=75 Identities=15% Similarity=-0.005 Sum_probs=54.7
Q ss_pred ceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEec
Q 021036 193 PISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFH 272 (318)
Q Consensus 193 ~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 272 (318)
.+..+.++ +++..++... ++.|++| |..+++ .+..+. +...+.+++|+|||++|++++.|+.|++||+.
T Consensus 253 ~~~~~~~~-----~~~~~~~~~~-~~~v~v~--d~~~~~--~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~ 321 (346)
T d1jmxb_ 253 LYFTGLRS-----PKDPNQIYGV-LNRLAKY--DLKQRK--LIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPD 321 (346)
T ss_dssp CEEEEEEC-----SSCTTEEEEE-ESEEEEE--ETTTTE--EEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETT
T ss_pred eeEEEEEe-----CCCCEEEEec-CCeEEEE--ECCCCc--EEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECc
Confidence 34445554 5555555554 4579999 666665 444443 45578999999999999999999999999999
Q ss_pred CCceee
Q 021036 273 GNSLSQ 278 (318)
Q Consensus 273 ~~~~~~ 278 (318)
+.+...
T Consensus 322 t~~~i~ 327 (346)
T d1jmxb_ 322 TLEKVK 327 (346)
T ss_dssp TTEEEE
T ss_pred cCCEEE
Confidence 877654
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.69 E-value=9.1e-15 Score=120.53 Aligned_cols=210 Identities=13% Similarity=0.043 Sum_probs=139.0
Q ss_pred CCCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEec
Q 021036 12 MKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGG 91 (318)
Q Consensus 12 ~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~ 91 (318)
+.+......++++.++.|.+||+.+++.+..+........ ......++|+|++ ++++++.
T Consensus 41 ~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~--~~~~~~v~~s~dg------------------~~l~~~~ 100 (337)
T d1pbyb_ 41 VAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEER--VKSLFGAALSPDG------------------KTLAIYE 100 (337)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEE--EECTTCEEECTTS------------------SEEEEEE
T ss_pred ECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCccc--ccceeeEEEcCCC------------------cEEEEee
Confidence 4443444457788899999999999987666554321111 1112236666666 7777665
Q ss_pred ------------CCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcE
Q 021036 92 ------------RSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSV 159 (318)
Q Consensus 92 ------------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v 159 (318)
.++.+.+||..+++ ....+.. ...+..+.| +++|+++++++.+ +
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~d~~~~~--------------~~~~~~~-~~~~~~~~~-------s~dg~~l~~~~~~--~ 156 (337)
T d1pbyb_ 101 SPVRLELTHFEVQPTRVALYDAETLS--------------RRKAFEA-PRQITMLAW-------ARDGSKLYGLGRD--L 156 (337)
T ss_dssp EEEEECSSCEEECCCEEEEEETTTTE--------------EEEEEEC-CSSCCCEEE-------CTTSSCEEEESSS--E
T ss_pred cCCcceeeeccccccceeeccccCCe--------------EEEeccc-cCCceEEEE-------cCCCCEEEEEcCC--c
Confidence 46678888888743 3444443 456788999 8999999988654 7
Q ss_pred EEEECCCcceeeeecccccccccc----------------------------------------------------eeee
Q 021036 160 RIWDGYIQELQKSAEAHCVPFSLL----------------------------------------------------KEVV 187 (318)
Q Consensus 160 ~iwd~~~~~~~~~~~~~~~~~~~~----------------------------------------------------~~~~ 187 (318)
.+||..+++....+..+..+.... ....
T Consensus 157 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (337)
T d1pbyb_ 157 HVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREV 236 (337)
T ss_dssp EEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEE
T ss_pred ceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEe
Confidence 789998877665543221100000 0011
Q ss_pred eecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEE
Q 021036 188 TVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVR 267 (318)
Q Consensus 188 ~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~ 267 (318)
..+...+..+.++ +++.+++.+ ++.|++| |..+++ .+..+. +...+.+++|+|+|++|++++.|++|+
T Consensus 237 ~~~~~~~~~~~~~-----~~~~~~~~~--~~~i~v~--d~~~~~--~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~ 304 (337)
T d1pbyb_ 237 RIMDVFYFSTAVN-----PAKTRAFGA--YNVLESF--DLEKNA--SIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLA 304 (337)
T ss_dssp EECSSCEEEEEEC-----TTSSEEEEE--ESEEEEE--ETTTTE--EEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEE
T ss_pred cCCCcceEEEEec-----ccceEEEEc--cccEEEE--ECCCCc--EEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEE
Confidence 1233344555665 777777766 5789999 666766 444443 566789999999999999999999999
Q ss_pred EEEecCCcee
Q 021036 268 SWIFHGNSLS 277 (318)
Q Consensus 268 iwd~~~~~~~ 277 (318)
+||+.+.+..
T Consensus 305 v~D~~t~~~v 314 (337)
T d1pbyb_ 305 AYDAETLEKK 314 (337)
T ss_dssp EEETTTCCEE
T ss_pred EEECCCCcEE
Confidence 9999986554
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.68 E-value=1.2e-15 Score=131.01 Aligned_cols=189 Identities=11% Similarity=-0.056 Sum_probs=118.7
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEEC
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDG 164 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~ 164 (318)
.++++.+.||+|+|||..+++ .+.++..|. .+..++| +|+|++|++++.|++|++||+
T Consensus 33 ~~~V~~~~dg~v~vwD~~t~~--------------~~~~l~~g~-~~~~vaf-------SPDGk~l~~~~~d~~v~vwd~ 90 (426)
T d1hzua2 33 LFSVTLRDAGQIALVDGDSKK--------------IVKVIDTGY-AVHISRM-------SASGRYLLVIGRDARIDMIDL 90 (426)
T ss_dssp EEEEEETTTTEEEEEETTTCS--------------EEEEEECCS-SEEEEEE-------CTTSCEEEEEETTSEEEEEET
T ss_pred EEEEEEcCCCEEEEEECCCCc--------------EEEEEeCCC-CeeEEEE-------CCCCCEEEEEeCCCCEEEEEc
Confidence 456788899999999999854 667777764 5899999 999999999999999999999
Q ss_pred CCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEE-eCCCcEEEeeeccCCCeeeEeeeeecccC
Q 021036 165 YIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVG-KGSGSFDLWKCDISCNKFDKVGSYNAHDQ 243 (318)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~h~~ 243 (318)
.+++.......... ..+...+.+++|+ |||++++++ ..++.+.+| |..... .+..+..|..
T Consensus 91 ~t~~~~~~~~i~~~---------~~~~~~~~s~~~s-----pDG~~l~v~~~~~~~v~i~--d~~~~~--~~~~~~~~~~ 152 (426)
T d1hzua2 91 WAKEPTKVAEIKIG---------IEARSVESSKFKG-----YEDRYTIAGAYWPPQFAIM--DGETLE--PKQIVSTRGM 152 (426)
T ss_dssp TSSSCEEEEEEECC---------SEEEEEEECCSTT-----CTTTEEEEEEEESSEEEEE--ETTTCC--EEEEEECCEE
T ss_pred cCCceeEEEEEeCC---------CCCcceEEeeeec-----CCCCEEEEeecCCCeEEEE--cCCccc--eeEEeeccCC
Confidence 98875543321110 1122233444555 899876555 588999999 566655 4445555555
Q ss_pred ceeEEEEcCCCC-EEEEecCCCcEEEEEecCCc-eeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 244 VVTGLAWAFDGC-CLYSCSQDNFVRSWIFHGNS-LSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 244 ~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
.+..+.+.+++. ..+..+.|+...++...... ........... +. ....++...+..++|+|++++++++
T Consensus 153 ~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~g~~~~~a 224 (426)
T d1hzua2 153 TVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDN-LT--VTSIGAAPFLADGGWDSSHRYFMTA 224 (426)
T ss_dssp CSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSS-CE--EEEEECCSSEEEEEECTTSCEEEEE
T ss_pred CccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccc-ee--eEEeccCCccEeeeECCCCcEEEee
Confidence 555555555554 23444455554444443321 11111111000 00 0011233477899999999988765
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.68 E-value=1.5e-14 Score=117.42 Aligned_cols=210 Identities=17% Similarity=0.103 Sum_probs=140.8
Q ss_pred CCCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEec
Q 021036 12 MKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGG 91 (318)
Q Consensus 12 ~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~ 91 (318)
+.+......++++.++.|++||+.+++.+..+.... ....+.|++++ ..+++++.
T Consensus 39 ~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~--------~~~~~~~~~~~-----------------~~~~~~~~ 93 (301)
T d1l0qa2 39 ISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS--------SPQGVAVSPDG-----------------KQVYVTNM 93 (301)
T ss_dssp ECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS--------SEEEEEECTTS-----------------SEEEEEET
T ss_pred EeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc--------ccccccccccc-----------------cccccccc
Confidence 344344445788899999999999988766554321 12237777777 34566677
Q ss_pred CCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEE-EEeCCCcEEEEECCCccee
Q 021036 92 RSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLV-TGSSDGSVRIWDGYIQELQ 170 (318)
Q Consensus 92 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~-s~~~d~~v~iwd~~~~~~~ 170 (318)
.++.+.+|+..+++ ....+.. .....++.| ++++..++ ++..++.+.+|+..+++..
T Consensus 94 ~~~~~~~~~~~~~~--------------~~~~~~~-~~~~~~~~~-------~~dg~~~~~~~~~~~~~~~~~~~~~~~~ 151 (301)
T d1l0qa2 94 ASSTLSVIDTTSNT--------------VAGTVKT-GKSPLGLAL-------SPDGKKLYVTNNGDKTVSVINTVTKAVI 151 (301)
T ss_dssp TTTEEEEEETTTTE--------------EEEEEEC-SSSEEEEEE-------CTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred ccceeeecccccce--------------eeeeccc-cccceEEEe-------ecCCCeeeeeeccccceeeeecccccee
Confidence 88899999998753 4444444 456788999 78887665 5556889999999887766
Q ss_pred eeecccccccccce-------------------------e--eeeecccceeEEEEeeccCCCCceEEEEEe---CCCcE
Q 021036 171 KSAEAHCVPFSLLK-------------------------E--VVTVNTVPISVLSLILPVQSPRLMLLAVGK---GSGSF 220 (318)
Q Consensus 171 ~~~~~~~~~~~~~~-------------------------~--~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~---~dg~i 220 (318)
..+.....+..... . ........+..++++ +++..+++++ .++.|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~v~~~~~~~~~v 226 (301)
T d1l0qa2 152 NTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVN-----PEGTKAYVTNVDKYFNTV 226 (301)
T ss_dssp EEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEEC-----TTSSEEEEEEECSSCCEE
T ss_pred eecccCCCceEEEeeccccceeeecccccccccccccceeeeecccccCCcceeecc-----ccccccccccccceeeee
Confidence 55433221111000 0 011122345677787 8888776654 34679
Q ss_pred EEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEE-EEecCCCcEEEEEecCCceee
Q 021036 221 DLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCL-YSCSQDNFVRSWIFHGNSLSQ 278 (318)
Q Consensus 221 ~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~d~~v~iwd~~~~~~~~ 278 (318)
++| |..+++ .+..+.. ...+.+++|+|||++| ++++.|++|++||+.++++..
T Consensus 227 ~v~--D~~t~~--~~~~~~~-~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~ 280 (301)
T d1l0qa2 227 SMI--DTGTNK--ITARIPV-GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITA 280 (301)
T ss_dssp EEE--ETTTTE--EEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred eee--ecCCCe--EEEEEcC-CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEE
Confidence 999 666666 4555543 4567999999999976 678889999999999887653
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.68 E-value=3.2e-14 Score=117.26 Aligned_cols=239 Identities=15% Similarity=0.088 Sum_probs=139.7
Q ss_pred eEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEE-EecCCCcEEE
Q 021036 20 TVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILA-VGGRSGKVSL 98 (318)
Q Consensus 20 ~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~-~g~~dg~i~i 98 (318)
.++++.|++|++|+++....+..+.. ..+.+. +..++|+|++ ++|+ ++..|+.|++
T Consensus 7 ~v~~~~~~~I~v~~~~~~~~l~~~~~--~~~~~~---v~~la~spDG------------------~~L~v~~~~d~~i~~ 63 (333)
T d1ri6a_ 7 YIASPESQQIHVWNLNHEGALTLTQV--VDVPGQ---VQPMVVSPDK------------------RYLYVGVRPEFRVLA 63 (333)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEE--EECSSC---CCCEEECTTS------------------SEEEEEETTTTEEEE
T ss_pred EEECCCCCcEEEEEEcCCCCeEEEEE--EcCCCC---EeEEEEeCCC------------------CEEEEEECCCCeEEE
Confidence 47788999999999987655433332 113333 2236677766 8775 4556899999
Q ss_pred EEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeC-CCcEEEEECCCcceeeeecc--
Q 021036 99 WRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSS-DGSVRIWDGYIQELQKSAEA-- 175 (318)
Q Consensus 99 w~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~-d~~v~iwd~~~~~~~~~~~~-- 175 (318)
|++...... .+... ...+...+..++| +++|++|++++. ++.+.+|+............
T Consensus 64 ~~i~~~~~~----------~~~~~-~~~~~~~p~~l~~-------spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~ 125 (333)
T d1ri6a_ 64 YRIAPDDGA----------LTFAA-ESALPGSLTHIST-------DHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE 125 (333)
T ss_dssp EEECTTTCC----------EEEEE-EEECSSCCSEEEE-------CTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC
T ss_pred EEEeCCCCc----------EEEee-ecccCCCceEEEE-------cCCCCEEeecccCCCceeeeccccccceecccccC
Confidence 999865421 11222 2233445678999 999999998885 67899998765433222110
Q ss_pred -----cccccccce------------------------------eeeeecccceeEEEEeeccCCCCceEEEEE-eCCCc
Q 021036 176 -----HCVPFSLLK------------------------------EVVTVNTVPISVLSLILPVQSPRLMLLAVG-KGSGS 219 (318)
Q Consensus 176 -----~~~~~~~~~------------------------------~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~-~~dg~ 219 (318)
+...+.... ............++|+ +++..++.. ...+.
T Consensus 126 ~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~-----~~~~~~~~~~~~~~~ 200 (333)
T d1ri6a_ 126 GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFH-----PNEQYAYCVNELNSS 200 (333)
T ss_dssp CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEEC-----TTSSEEEEEETTTTE
T ss_pred CCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEe-----ccceeEEeeccccCc
Confidence 000000000 0011122334567777 676665544 45666
Q ss_pred EEEeeeccCCCeeeEeeeee------cccCceeEEEEcCCCCEEE-EecCCCcEEEEEecCCc-eeeeecCCCCCCcccc
Q 021036 220 FDLWKCDISCNKFDKVGSYN------AHDQVVTGLAWAFDGCCLY-SCSQDNFVRSWIFHGNS-LSQVSIPTNTPGLQSC 291 (318)
Q Consensus 220 i~vw~~~~~~~~~~~~~~~~------~h~~~v~~~~~~~~~~~l~-s~~~d~~v~iwd~~~~~-~~~~~~~~~~~~~~~~ 291 (318)
..+|+++............. ........+++++++++++ .+..++.+.+|++.... .........
T Consensus 201 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 273 (333)
T d1ri6a_ 201 VDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP------- 273 (333)
T ss_dssp EEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE-------
T ss_pred eEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeC-------
Confidence 77776555444332322221 1234566788999998654 55677899999987532 222211110
Q ss_pred ccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 292 TDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 292 ~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
+...+.+++|+|||++|+++
T Consensus 274 -----~~~~p~~~a~spDGk~l~va 293 (333)
T d1ri6a_ 274 -----TETQPRGFNVDHSGKYLIAA 293 (333)
T ss_dssp -----CSSSCCCEEECTTSSEEEEE
T ss_pred -----CCCCeeEEEEeCCCCEEEEE
Confidence 11245789999999988765
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.67 E-value=8.3e-15 Score=121.25 Aligned_cols=76 Identities=7% Similarity=-0.089 Sum_probs=61.0
Q ss_pred cCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeec-cccccEEEEEeeeecCCCCCCCcEE-EEEeC
Q 021036 78 NGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQ-AHNSWITSISLAVLSSDSSNPQVLL-VTGSS 155 (318)
Q Consensus 78 ~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~~~~~~~l-~s~~~ 155 (318)
.++++++++|++++.|++|.+||++++ +.+++++ .|...+.+++| +|+|+++ +++..
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~--------------~~~~t~~~~~~~~p~~l~~-------spDG~~l~v~~~~ 60 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASD--------------TVYKSCVMPDKFGPGTAMM-------APDNRTAYVLNNH 60 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTT--------------EEEEEEECSSCCSSCEEEE-------CTTSSEEEEEETT
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCC--------------CEEEEEEcCCCCCcceEEE-------CCCCCEEEEEECC
Confidence 456677799999999999999999985 4556665 45566789999 8999876 55567
Q ss_pred CCcEEEEECCCcceeeeec
Q 021036 156 DGSVRIWDGYIQELQKSAE 174 (318)
Q Consensus 156 d~~v~iwd~~~~~~~~~~~ 174 (318)
++.|.+||+.+++....+.
T Consensus 61 ~~~v~~~d~~t~~~~~~~~ 79 (346)
T d1jmxb_ 61 YGDIYGIDLDTCKNTFHAN 79 (346)
T ss_dssp TTEEEEEETTTTEEEEEEE
T ss_pred CCcEEEEeCccCeeeeeec
Confidence 8999999999987776544
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.56 E-value=2.1e-13 Score=112.28 Aligned_cols=187 Identities=10% Similarity=0.026 Sum_probs=123.7
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEe-CCCcEEEEE
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS-SDGSVRIWD 163 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~-~d~~v~iwd 163 (318)
..+++++.|++|++|+++.... .+.++. ..|.+.+..|+| +|+|++|++++ .|+.|++|+
T Consensus 5 ~v~v~~~~~~~I~v~~~~~~~~-----------l~~~~~-~~~~~~v~~la~-------spDG~~L~v~~~~d~~i~~~~ 65 (333)
T d1ri6a_ 5 TVYIASPESQQIHVWNLNHEGA-----------LTLTQV-VDVPGQVQPMVV-------SPDKRYLYVGVRPEFRVLAYR 65 (333)
T ss_dssp EEEEEEGGGTEEEEEEECTTSC-----------EEEEEE-EECSSCCCCEEE-------CTTSSEEEEEETTTTEEEEEE
T ss_pred EEEEECCCCCcEEEEEEcCCCC-----------eEEEEE-EcCCCCEeEEEE-------eCCCCEEEEEECCCCeEEEEE
Confidence 4567888999999999976432 123333 357788999999 99999886555 589999999
Q ss_pred CCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeC-CCcEEEeeeccCCCeeeEeeeeeccc
Q 021036 164 GYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKG-SGSFDLWKCDISCNKFDKVGSYNAHD 242 (318)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~h~ 242 (318)
+........+..+. .....+..++|+ |+|++|++++. ++.|.+|+.+ ............+.
T Consensus 66 i~~~~~~~~~~~~~-----------~~~~~p~~l~~s-----pDg~~l~v~~~~~~~v~~~~~~--~~~~~~~~~~~~~~ 127 (333)
T d1ri6a_ 66 IAPDDGALTFAAES-----------ALPGSLTHISTD-----HQGQFVFVGSYNAGNVSVTRLE--DGLPVGVVDVVEGL 127 (333)
T ss_dssp ECTTTCCEEEEEEE-----------ECSSCCSEEEEC-----TTSSEEEEEETTTTEEEEEEEE--TTEEEEEEEEECCC
T ss_pred EeCCCCcEEEeeec-----------ccCCCceEEEEc-----CCCCEEeecccCCCceeeeccc--cccceecccccCCC
Confidence 98654433322211 122356789999 99999988874 6788898544 33322344445567
Q ss_pred CceeEEEEcCCCCEEEEec-CCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 243 QVVTGLAWAFDGCCLYSCS-QDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 243 ~~v~~~~~~~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
..+.++.++|+++++++++ .+..|.+|+.............. ...........++|++++.++...
T Consensus 128 ~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--------~~~~~g~~p~~i~~~~~~~~~~~~ 194 (333)
T d1ri6a_ 128 DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAE--------VTTVEGAGPRHMVFHPNEQYAYCV 194 (333)
T ss_dssp TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE--------EECSTTCCEEEEEECTTSSEEEEE
T ss_pred ccceEEEeeecceeeeccccccceeeEEEeccCCcceeeecee--------eeeecCCCccEEEEeccceeEEee
Confidence 7788999999999877665 45679999987643322111000 000112245788999988876543
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.49 E-value=6.4e-12 Score=105.08 Aligned_cols=230 Identities=8% Similarity=-0.089 Sum_probs=126.0
Q ss_pred eCCCceeEeecCCCCCCCceecchhccccccccceeeeeccccc----------------------CCCCcccccccCCC
Q 021036 24 SKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLR----------------------LSSKKYPVPQNGSS 81 (318)
Q Consensus 24 s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~----------------------~~~~~~~v~~~~~s 81 (318)
+.++.+++||..+++.+..+................+.|+|++. ...+.....++.++
T Consensus 94 ~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 173 (373)
T d2madh_ 94 KRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIH 173 (373)
T ss_pred ccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEEEe
Confidence 45688999999998876655433211100000111133333322 11222334567778
Q ss_pred CCccE-EEEecCCCcEEEEEccCCccccccccccCCceeEEeee--ccccccEEEEEeeeecCCCCCCCcEEEEEeCCCc
Q 021036 82 NWFSI-LAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLF--QAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGS 158 (318)
Q Consensus 82 ~~~~~-l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~ 158 (318)
++++. +++.+.||.+.+|+...++... ...... .........+.+ ..++ .++..+.++.
T Consensus 174 ~~g~~~~v~~~~dg~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~~~~~~~ 235 (373)
T d2madh_ 174 PGAPSTFYLLCAQGGLAKTDHAGGAAGA----------GLVGAMLTAAQNLLTQPAQA-------NKSG-RIVWPVYSGK 235 (373)
T ss_pred cCCCcEEEEEcCCCeEEEEEcCCceeeE----------EEeeeccccCccceeeeEEE-------CCCc-eEEEecCCce
Confidence 88764 5678899999999998755321 011111 111122333444 4444 4556677899
Q ss_pred EEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeec-----cCCCCceEEEEEeCCCcEEEeeeccCCCeee
Q 021036 159 VRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILP-----VQSPRLMLLAVGKGSGSFDLWKCDISCNKFD 233 (318)
Q Consensus 159 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-----~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 233 (318)
+.+|+...+............... ............++++.+ ....++..++....++.+.+| |..+++
T Consensus 236 v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~--d~~t~~-- 309 (373)
T d2madh_ 236 ILQADISAAGATNKAPIDALSGGR--KADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSV--TGLVGQ-- 309 (373)
T ss_pred EEEEEcCCCeEEEEEeeccccCcE--EeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEE--ECCCCc--
Confidence 999998876543222111000000 000001112233344400 000333445556667788888 555665
Q ss_pred EeeeeecccCceeEEEEcCCCC--EEEEecCCCcEEEEEecCCceee
Q 021036 234 KVGSYNAHDQVVTGLAWAFDGC--CLYSCSQDNFVRSWIFHGNSLSQ 278 (318)
Q Consensus 234 ~~~~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~v~iwd~~~~~~~~ 278 (318)
.+..+. +...+..++|+|||+ ++++++.|++|++||+.+++...
T Consensus 310 ~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~ 355 (373)
T d2madh_ 310 TSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQ 355 (373)
T ss_pred EEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEE
Confidence 444443 667789999999998 45688999999999999987654
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.45 E-value=4.3e-13 Score=111.45 Aligned_cols=218 Identities=9% Similarity=-0.086 Sum_probs=133.6
Q ss_pred eCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEe----------cCC
Q 021036 24 SKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVG----------GRS 93 (318)
Q Consensus 24 s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g----------~~d 93 (318)
+.+.++.+||..+++.+..+.... ...++|+|++ ++|++. ..|
T Consensus 25 ~~~~~v~v~D~~tg~~~~~~~~g~---------~~~~a~SpDg------------------~~l~v~~~~~~~~~~g~~d 77 (355)
T d2bbkh_ 25 AAVTQQFVIDGEAGRVIGMIDGGF---------LPNPVVADDG------------------SFIAHASTVFSRIARGERT 77 (355)
T ss_dssp CSSEEEEEEETTTTEEEEEEEECS---------SCEEEECTTS------------------SCEEEEEEEEEETTEEEEE
T ss_pred CCcCeEEEEECCCCcEEEEEECCC---------CCceEEcCCC------------------CEEEEEeCCCccccccCCC
Confidence 456789999999988766554311 1137888887 666553 458
Q ss_pred CcEEEEEccCCccccccccccCCceeEEeeeccc-------cccEEEEEeeeecCCCCCCCcEEEEEe--CCCcEEEEEC
Q 021036 94 GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAH-------NSWITSISLAVLSSDSSNPQVLLVTGS--SDGSVRIWDG 164 (318)
Q Consensus 94 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h-------~~~v~~~~~~p~~~~~~~~~~~l~s~~--~d~~v~iwd~ 164 (318)
+.|++||..+++. +..+..+ ......+.| ++++++++.+. .+..+.+|+.
T Consensus 78 ~~v~v~D~~t~~~--------------~~~~~~~~~~~~~~~~~~~~~~~-------s~dg~~~~v~~~~~~~~~~~~~~ 136 (355)
T d2bbkh_ 78 DYVEVFDPVTLLP--------------TADIELPDAPRFLVGTYPWMTSL-------TPDGKTLLFYQFSPAPAVGVVDL 136 (355)
T ss_dssp EEEEEECTTTCCE--------------EEEEEETTCCCCCBSCCGGGEEE-------CTTSSEEEEEECSSSCEEEEEET
T ss_pred CEEEEEECCCCCE--------------EEEEecCCcceeecCCCCceEEE-------ecCCCeeEEecCCCCceeeeeec
Confidence 8999999998653 2332221 122345788 88998887765 4678999999
Q ss_pred CCcceeeeecccccccc------------ccee-------------------eeeecccceeEEEEeeccCCCCceEEEE
Q 021036 165 YIQELQKSAEAHCVPFS------------LLKE-------------------VVTVNTVPISVLSLILPVQSPRLMLLAV 213 (318)
Q Consensus 165 ~~~~~~~~~~~~~~~~~------------~~~~-------------------~~~~~~~~v~~l~~~~~~~~~~~~~l~~ 213 (318)
.+++....+........ .... ....+...+....+. +++..++.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 211 (355)
T d2bbkh_ 137 EGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYS-----QKAGRLVW 211 (355)
T ss_dssp TTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEE-----TTTTEEEE
T ss_pred CCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeecccc-----CCCCeEEE
Confidence 98877665543221000 0000 000111223334555 66777888
Q ss_pred EeCCCcEEEeeeccCCCeeeEeeeeecc----------cCceeEEEEcCCCCEEEEecCC----------CcEEEEEecC
Q 021036 214 GKGSGSFDLWKCDISCNKFDKVGSYNAH----------DQVVTGLAWAFDGCCLYSCSQD----------NFVRSWIFHG 273 (318)
Q Consensus 214 ~~~dg~i~vw~~~~~~~~~~~~~~~~~h----------~~~v~~~~~~~~~~~l~s~~~d----------~~v~iwd~~~ 273 (318)
++.++.+++|+++ .+....+.....+ ......+++++++..++....+ ..|.+||..+
T Consensus 212 ~~~~~~~~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t 289 (355)
T d2bbkh_ 212 PTYTGKIHQIDLS--SGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT 289 (355)
T ss_dssp EBTTSEEEEEECT--TSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT
T ss_pred ecCCCeEEEEecC--CCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCC
Confidence 8899999999543 4432233322222 1233558899999877665433 4699999988
Q ss_pred CceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCc
Q 021036 274 NSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNL 311 (318)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 311 (318)
++....... ...+.+++|+|||+
T Consensus 290 ~~~~~~~~~---------------~~~~~~~a~spDG~ 312 (355)
T d2bbkh_ 290 GERLAKFEM---------------GHEIDSINVSQDEK 312 (355)
T ss_dssp CCEEEEEEE---------------EEEECEEEECCSSS
T ss_pred CcEEEEecC---------------CCCEEEEEEcCCCC
Confidence 765432211 23678999999997
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.41 E-value=5.6e-12 Score=104.55 Aligned_cols=216 Identities=8% Similarity=-0.079 Sum_probs=122.8
Q ss_pred eCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEe--cCCCcEEEEEc
Q 021036 24 SKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVG--GRSGKVSLWRI 101 (318)
Q Consensus 24 s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g--~~dg~i~iw~~ 101 (318)
+.|+.|++||..+++.+..+................++|+|++ ++++.+ +.+..+.+|+.
T Consensus 75 ~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg------------------~~~~v~~~~~~~~~~~~~~ 136 (355)
T d2bbkh_ 75 ERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDG------------------KTLLFYQFSPAPAVGVVDL 136 (355)
T ss_dssp EEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTS------------------SEEEEEECSSSCEEEEEET
T ss_pred CCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCC------------------CeeEEecCCCCceeeeeec
Confidence 4578999999999887666544221111000111225555555 666554 45667888988
Q ss_pred cCCccccccccc---------------cCCceeEEee----------------eccccccEEEEEeeeecCCCCCCCcEE
Q 021036 102 CVPKCYSVEDCK---------------VPTTAVLIGL----------------FQAHNSWITSISLAVLSSDSSNPQVLL 150 (318)
Q Consensus 102 ~~~~~~~~~~~~---------------~~~~~~~~~~----------------~~~h~~~v~~~~~~p~~~~~~~~~~~l 150 (318)
.+++........ ...+++.+.. ...+...+....+ ..++..+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 209 (355)
T d2bbkh_ 137 EGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAY-------SQKAGRL 209 (355)
T ss_dssp TTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEE-------ETTTTEE
T ss_pred CCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccc-------cCCCCeE
Confidence 876543211100 0000000000 0011222333444 4566678
Q ss_pred EEEeCCCcEEEEECCCcceeee--ecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCC----------C
Q 021036 151 VTGSSDGSVRIWDGYIQELQKS--AEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGS----------G 218 (318)
Q Consensus 151 ~s~~~d~~v~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~d----------g 218 (318)
+.++.++.+++|++..++.... ...+.... ... .........++++ +++..++....+ .
T Consensus 210 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~--~~~p~~~~~~~~~-----~d~~~~~~~~~~~~~~~~~~~~~ 280 (355)
T d2bbkh_ 210 VWPTYTGKIHQIDLSSGDAKFLPAVEALTEAE--RAD--GWRPGGWQQVAYH-----RALDRIYLLVDQRDEWRHKTASR 280 (355)
T ss_dssp EEEBTTSEEEEEECTTSSCEECCCEESSCHHH--HHT--TEEECSSSCEEEE-----TTTTEEEEEEEECCTTCTTSCEE
T ss_pred EEecCCCeEEEEecCCCcEEEEeccCCcccce--Eee--eeeccceEEEEEe-----CCCCeEEEEeccCCceeecCCCC
Confidence 8889999999999987754321 11111000 000 0011233457888 888877766543 3
Q ss_pred cEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCC--EEEEecCCCcEEEEEecCCceee
Q 021036 219 SFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGC--CLYSCSQDNFVRSWIFHGNSLSQ 278 (318)
Q Consensus 219 ~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~v~iwd~~~~~~~~ 278 (318)
.|.+| |..+++ .+.++. +...+.+++|+|||+ ++++++.|++|++||+++++...
T Consensus 281 ~v~v~--d~~t~~--~~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~ 337 (355)
T d2bbkh_ 281 FVVVL--DAKTGE--RLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELR 337 (355)
T ss_dssp EEEEE--ETTTCC--EEEEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEE
T ss_pred eEEEE--eCCCCc--EEEEec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEE
Confidence 57888 666665 455554 345578999999997 45677889999999999987654
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.31 E-value=1.1e-10 Score=98.40 Aligned_cols=209 Identities=9% Similarity=-0.094 Sum_probs=122.7
Q ss_pred ccceEEeeCCCceeEeecCCCCCCCceecchhccccccccce-----ee-eecccc-cCCCCcccccccCCCCCccEEEE
Q 021036 17 THPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSL-----AV-AWSPVL-RLSSKKYPVPQNGSSNWFSILAV 89 (318)
Q Consensus 17 ~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~w~p~~-~~~~~~~~v~~~~~s~~~~~l~~ 89 (318)
....++++.+|++++|++++++.+..+... ...+...... .+ .-.... ..-.|--.......++||++|++
T Consensus 11 ~y~f~Sgg~sG~V~V~dlpS~r~l~~IpVf--spd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV 88 (441)
T d1qnia2 11 YYGFWSGGHQGEVRVLGVPSMRELMRIPVF--NVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFI 88 (441)
T ss_dssp EEEEEECBTTCCEEEEEETTTEEEEEECSS--SBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEE
T ss_pred EEEEEeCCCCCcEEEEeCCCCcEEEEEEeE--cCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEE
Confidence 345788999999999999998877665431 1111100000 00 000000 00113334556677888898865
Q ss_pred e-cCCCcEEEEEccCCccccccccccCCceeEEeeec-cccccEEEEEeeeecCCCCCCCc--EEEEEeCCCc-------
Q 021036 90 G-GRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQ-AHNSWITSISLAVLSSDSSNPQV--LLVTGSSDGS------- 158 (318)
Q Consensus 90 g-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~~~~~~--~l~s~~~d~~------- 158 (318)
. ..+.+|.++|+++.+ ..+.+. .+...+..++| +++|+ +++..+.+..
T Consensus 89 ~d~~~~rVavIDl~t~k--------------~~~ii~iP~g~gphgi~~-------spdg~t~YV~~~~~~~v~~~~dg~ 147 (441)
T d1qnia2 89 NDKANTRVARIRLDIMK--------------TDKITHIPNVQAIHGLRL-------QKVPKTNYVFCNAEFVIPQPNDGT 147 (441)
T ss_dssp EETTTTEEEEEETTTTE--------------EEEEEECTTCCCEEEEEE-------CCSSBCCEEEEEECSCEESSCSSS
T ss_pred EcCCCCEEEEEECCCCc--------------EeeEEecCCCCCccceEE-------eccCCEEEEEeccCCcccccCccc
Confidence 5 578899999999865 233332 34667899999 88887 4444443321
Q ss_pred ----------EEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCC----------
Q 021036 159 ----------VRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSG---------- 218 (318)
Q Consensus 159 ----------v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg---------- 218 (318)
+..+|..+.+....+.... ....+.++ |+|+++++++.+.
T Consensus 148 ~~~~~~~~~~~~~iD~~t~~v~~qI~v~~---------------~p~~v~~s-----pdGk~a~vt~~nse~~~~id~~t 207 (441)
T d1qnia2 148 DFSLDNSYTMFTAIDAETMDVAWQVIVDG---------------NLDNTDAD-----YTGKYATSTCYNSERAVDLAGTM 207 (441)
T ss_dssp CCCGGGEEEEEEEEETTTCSEEEEEEESS---------------CCCCEEEC-----SSSSEEEEEESCTTCCSSHHHHT
T ss_pred ccccccccceEEeecCccceeeEEEecCC---------------CccceEEC-----CCCCEEEEEecCCCceEEEeccC
Confidence 2335555555444433222 45677787 8888877776442
Q ss_pred -------------------------------cEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEE-EEecCCCcE
Q 021036 219 -------------------------------SFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCL-YSCSQDNFV 266 (318)
Q Consensus 219 -------------------------------~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~d~~v 266 (318)
.+.++ ...... .+..+..... ...+.++|||+++ +++..+++|
T Consensus 208 ~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd--~~~~~~--v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tv 282 (441)
T d1qnia2 208 RNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVD--GRGESE--FTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTV 282 (441)
T ss_dssp CSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEE--CSSSCS--SEEEECCBSS-CCCEEECTTSCEEEEECTTSSBE
T ss_pred cceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEE--cccCCc--eEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcE
Confidence 22332 111111 2333333333 4789999999976 567889999
Q ss_pred EEEEecC
Q 021036 267 RSWIFHG 273 (318)
Q Consensus 267 ~iwd~~~ 273 (318)
.+||+.+
T Consensus 283 sv~d~~k 289 (441)
T d1qnia2 283 SVIAIDK 289 (441)
T ss_dssp EEEEGGG
T ss_pred EEEEeeh
Confidence 9999854
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.28 E-value=5.3e-10 Score=93.09 Aligned_cols=166 Identities=8% Similarity=-0.121 Sum_probs=113.6
Q ss_pred CCcccccccCCCCCccEEEEe-----cCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCC
Q 021036 70 SKKYPVPQNGSSNWFSILAVG-----GRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSS 144 (318)
Q Consensus 70 ~~~~~v~~~~~s~~~~~l~~g-----~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 144 (318)
.+..++.+.+++|+++.++.. +.++.|.+||.++++ .+..+..+..+ .+.| +
T Consensus 18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~--------------~~~~~~~~~~~--~~a~-------S 74 (373)
T d2madh_ 18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGS--------------ILGHVNGGFLP--NPVA-------A 74 (373)
T ss_pred cCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCC--------------EEEEEeCCCCc--cEEE-------c
Confidence 466778888888888888764 334678999988854 55566555443 6899 9
Q ss_pred CCCcEEEEEe----------CCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEE
Q 021036 145 NPQVLLVTGS----------SDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVG 214 (318)
Q Consensus 145 ~~~~~l~s~~----------~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~ 214 (318)
|+|++|+++. .++.|.+||..+++....+..+..... .-......+.|+ ++++.++..
T Consensus 75 pDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~-------~~~~~~~~~~~s-----~dg~~~~v~ 142 (373)
T d2madh_ 75 HSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRF-------DVGPYSWMNANT-----PNNADLLFF 142 (373)
T ss_pred CCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCccee-------EeccCCCcEEEE-----eCCCcEEEE
Confidence 9999998875 457899999999988877654432110 001123456777 788766655
Q ss_pred e--CCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCC-EEEEecCCCcEEEEEecCCceee
Q 021036 215 K--GSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGC-CLYSCSQDNFVRSWIFHGNSLSQ 278 (318)
Q Consensus 215 ~--~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~ 278 (318)
. .++.+.+| +....+ . ..+.....++.++|+|+ .+++.+.|+.+.+|+...+....
T Consensus 143 ~~~~~~~~~~~--~~~~~~--~----~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~ 201 (373)
T d2madh_ 143 QFAAGPAVGLV--VQGGSS--D----DQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGA 201 (373)
T ss_pred EEcCCCceEEe--eccCCe--E----EEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeE
Confidence 4 45567777 443433 1 22334567889999987 45788899999999998765543
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.26 E-value=4.8e-11 Score=99.74 Aligned_cols=75 Identities=7% Similarity=-0.001 Sum_probs=51.7
Q ss_pred eEEEEeeccCCCCceEEEEEeCCC---------cEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCC--EEEEecCC
Q 021036 195 SVLSLILPVQSPRLMLLAVGKGSG---------SFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGC--CLYSCSQD 263 (318)
Q Consensus 195 ~~l~~~~~~~~~~~~~l~~~~~dg---------~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~~~d 263 (318)
..++++ +++..++....++ .|.+| |..+++ .+.++. +...+.+++|+|||+ .++++..|
T Consensus 267 ~~~a~~-----~~~~~~~v~~~~~~~~~~~~~~~v~v~--D~~t~~--~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~ 336 (368)
T d1mdah_ 267 QMVAKL-----KNTDGIMILTVEHSRSCLAAAENTSSV--TASVGQ--TSGPIS-NGHDSDAIIAAQDGASDNYANSAGT 336 (368)
T ss_dssp SCEEEE-----TTTTEEEEEEEECSSCTTSCEEEEEEE--ESSSCC--EEECCE-EEEEECEEEECCSSSCEEEEEETTT
T ss_pred eeEEEc-----CCCCEEEEEecCCCceeecCCceEEEE--ECCCCc--EeEEec-CCCceeEEEECCCCCEEEEEEeCCC
Confidence 346677 6766665543222 36666 666766 555554 345688999999997 35677889
Q ss_pred CcEEEEEecCCceeee
Q 021036 264 NFVRSWIFHGNSLSQV 279 (318)
Q Consensus 264 ~~v~iwd~~~~~~~~~ 279 (318)
+.|++||..+++....
T Consensus 337 ~~v~v~D~~tgk~~~~ 352 (368)
T d1mdah_ 337 EVLDIYDAASDQDQSS 352 (368)
T ss_dssp TEEEEEESSSCEEEEE
T ss_pred CeEEEEECCCCCEEEE
Confidence 9999999998876543
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.18 E-value=8.7e-11 Score=101.47 Aligned_cols=157 Identities=13% Similarity=0.119 Sum_probs=108.5
Q ss_pred EEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEE
Q 021036 132 TSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLL 211 (318)
Q Consensus 132 ~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l 211 (318)
..+.| .++++++.. .|+.+.+||+.+++....+..+.. ..+...|.++.|+ |||+.|
T Consensus 20 ~~~~W-------~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~---------~~~~~~i~~~~~S-----pDg~~i 76 (470)
T d2bgra1 20 YSLRW-------ISDHEYLYK--QENNILVFNAEYGNSSVFLENSTF---------DEFGHSINDYSIS-----PDGQFI 76 (470)
T ss_dssp CCCEE-------CSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTT---------TTSSSCCCEEEEC-----TTSSEE
T ss_pred cCCEe-------CCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhh---------hhccCccceeEEC-----CCCCEE
Confidence 35788 788877763 578899999999987655543321 2234478899999 999999
Q ss_pred EEEeC---------CCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecC
Q 021036 212 AVGKG---------SGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIP 282 (318)
Q Consensus 212 ~~~~~---------dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 282 (318)
+.++. ++.+.+| ++.+++ +..+..+...+..+.|||||++||.. .++.+++|+..++....+...
T Consensus 77 ~~~~~~~~~~r~s~~~~~~l~--d~~~~~---~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~ 150 (470)
T d2bgra1 77 LLEYNYVKQWRHSYTASYDIY--DLNKRQ---LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWT 150 (470)
T ss_dssp EEEEEEEECSSSCEEEEEEEE--ETTTTE---ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSC
T ss_pred EEEECCcceeeeccCceEEEE--ECCCCc---ccccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeec
Confidence 98753 4667788 666765 34567788889999999999999986 567899999988776554332
Q ss_pred CCCCCcc-ccccC---CCcceeeeEEEEcCCCcEEEEEe
Q 021036 283 TNTPGLQ-SCTDL---PDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 283 ~~~~~~~-~~~~~---~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
....... +..+. ....+....+.|||||+.||..+
T Consensus 151 ~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~ 189 (470)
T d2bgra1 151 GKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ 189 (470)
T ss_dssp CBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred cCCCcccccccceeeeeeecCCccccEECCCCCccceeE
Confidence 2211100 11000 01223456789999999999864
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.11 E-value=1e-09 Score=91.52 Aligned_cols=108 Identities=8% Similarity=-0.127 Sum_probs=71.3
Q ss_pred EEeeCCCceeEe--ecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEe--------
Q 021036 21 VAASKSKGNSIT--KIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVG-------- 90 (318)
Q Consensus 21 ~t~s~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g-------- 90 (318)
+++..+++.++| |..+++.+..+.... ...++|+|++ +.|++.
T Consensus 38 ~~~~~~g~~~~~~~d~~~~~~~~~~~~~~---------~~~~a~spDg------------------~~i~~~~~~~~~~~ 90 (368)
T d1mdah_ 38 LPAYFAGTTENWVSCAGCGVTLGHSLGAF---------LSLAVAGHSG------------------SDFALASTSFARSA 90 (368)
T ss_dssp ECTTTCSSEEEEEEETTTTEEEEEEEECT---------TCEEEECTTS------------------SCEEEEEEEETTTT
T ss_pred eeccCCCcceEEEEeCCCCcEEEEEeCCC---------CCcceECCCC------------------CEEEEEcccCcccc
Confidence 445566665555 888877655554321 1127788887 666653
Q ss_pred --cCCCcEEEEEccCCccccccccccCCceeEEeeecccc-------ccEEEEEeeeecCCCCCCCcEEEEEe-CCCcEE
Q 021036 91 --GRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHN-------SWITSISLAVLSSDSSNPQVLLVTGS-SDGSVR 160 (318)
Q Consensus 91 --~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-------~~v~~~~~~p~~~~~~~~~~~l~s~~-~d~~v~ 160 (318)
..|+.|++||..+++ .+..+..+. .....++| +++|++|+++. .++.+.
T Consensus 91 ~g~~d~~v~v~D~~t~~--------------~~~~i~~p~~~~~~~g~~p~~~a~-------SpDGk~l~va~~~~~~v~ 149 (368)
T d1mdah_ 91 KGKRTDYVEVFDPVTFL--------------PIADIELPDAPRFSVGPRVHIIGN-------CASSACLLFFLFGSSAAA 149 (368)
T ss_dssp SSSEEEEEEEECTTTCC--------------EEEEEEETTSCSCCBSCCTTSEEE-------CTTSSCEEEEECSSSCEE
T ss_pred ccccCCeEEEEECCCCc--------------EeeeecCCccceecccCCccceEE-------CCCCCEEEEEeCCCCeEE
Confidence 457889999999865 333332221 12245889 99999888776 579999
Q ss_pred EEECCCcceeeeeccc
Q 021036 161 IWDGYIQELQKSAEAH 176 (318)
Q Consensus 161 iwd~~~~~~~~~~~~~ 176 (318)
+||+.+++....+..+
T Consensus 150 ~~d~~~~~~~~~~~~~ 165 (368)
T d1mdah_ 150 GLSVPGASDDQLTKSA 165 (368)
T ss_dssp EEEETTTEEEEEEECS
T ss_pred EEECCCCcEeEEeecc
Confidence 9999998877765443
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.00 E-value=1.3e-09 Score=93.84 Aligned_cols=144 Identities=14% Similarity=0.068 Sum_probs=98.4
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEE--eeeccccccEEEEEeeeecCCCCCCCcEEEEEeC-------
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLI--GLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSS------- 155 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~--~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~------- 155 (318)
+++.. .|+.+.+||..+++.. ..+ ..+..|...|.++.| +|+|++|+.++.
T Consensus 29 ~~~~~--~~~~~~~~~~~t~~~~-----------~~~~~~~~~~~~~~i~~~~~-------SpDg~~i~~~~~~~~~~r~ 88 (470)
T d2bgra1 29 EYLYK--QENNILVFNAEYGNSS-----------VFLENSTFDEFGHSINDYSI-------SPDGQFILLEYNYVKQWRH 88 (470)
T ss_dssp EEEEE--SSSCEEEEETTTCCEE-----------EEECTTTTTTSSSCCCEEEE-------CTTSSEEEEEEEEEECSSS
T ss_pred EEEEE--cCCcEEEEECCCCCEE-----------EEEchhhhhhccCccceeEE-------CCCCCEEEEEECCcceeee
Confidence 77764 4788999999997631 111 134556678999999 999999998753
Q ss_pred --CCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeee
Q 021036 156 --DGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFD 233 (318)
Q Consensus 156 --d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 233 (318)
++.+.+||+.+++... +..+ ...+....|+ |||+.+|... ++.+++| +..+++..
T Consensus 89 s~~~~~~l~d~~~~~~~~-l~~~--------------~~~~~~~~~S-----PDG~~ia~~~-~~~l~~~--~~~~g~~~ 145 (470)
T d2bgra1 89 SYTASYDIYDLNKRQLIT-EERI--------------PNNTQWVTWS-----PVGHKLAYVW-NNDIYVK--IEPNLPSY 145 (470)
T ss_dssp CEEEEEEEEETTTTEECC-SSCC--------------CTTEEEEEEC-----SSTTCEEEEE-TTEEEEE--SSTTSCCE
T ss_pred ccCceEEEEECCCCcccc-cccC--------------Cccccccccc-----cCcceeeEee-cccceEE--ECCCCcee
Confidence 5678899999876433 3322 3367889999 9999999865 7788998 55555422
Q ss_pred Eeeee-------ec---------ccCceeEEEEcCCCCEEEEecCCCc-EEEEEe
Q 021036 234 KVGSY-------NA---------HDQVVTGLAWAFDGCCLYSCSQDNF-VRSWIF 271 (318)
Q Consensus 234 ~~~~~-------~~---------h~~~v~~~~~~~~~~~l~s~~~d~~-v~iwd~ 271 (318)
.+... .+ ..+....+.|+|||++|+....|.+ +..|++
T Consensus 146 ~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~ 200 (470)
T d2bgra1 146 RITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEY 200 (470)
T ss_dssp ECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred eeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEE
Confidence 22110 00 1233456889999999998876644 665554
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.93 E-value=8e-07 Score=71.45 Aligned_cols=198 Identities=9% Similarity=-0.018 Sum_probs=118.1
Q ss_pred ccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEe
Q 021036 75 VPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS 154 (318)
Q Consensus 75 v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~ 154 (318)
+.+++++++|+++++...++.+..|+....... ...+... ......+.+.+ .++++++++.+
T Consensus 70 ~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~----------~~~~~~~-~~~~~~n~i~~-------~~~g~~~v~~~ 131 (302)
T d2p4oa1 70 VSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT----------VETLLTL-PDAIFLNGITP-------LSDTQYLTADS 131 (302)
T ss_dssp EEEEEECTTSCEEEEEECTTSCEEEEEECTTSC----------EEEEEEC-TTCSCEEEEEE-------SSSSEEEEEET
T ss_pred cceEEEcCCCCeEEEecCCceEEEEEecccccc----------eeecccc-CCccccceeEE-------ccCCCEEeecc
Confidence 445555556699999888888888887653310 1122222 23456789999 89999999888
Q ss_pred CCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeE
Q 021036 155 SDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDK 234 (318)
Q Consensus 155 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 234 (318)
.++.+..+|...+............. ............+.++ .+.++++.+..+.|+.++.+..... ..
T Consensus 132 ~~~~i~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ngi~~~------~~~l~~~~~~~~~i~~~~~~~~~~~-~~ 200 (302)
T d2p4oa1 132 YRGAIWLIDVVQPSGSIWLEHPMLAR----SNSESVFPAANGLKRF------GNFLYVSNTEKMLLLRIPVDSTDKP-GE 200 (302)
T ss_dssp TTTEEEEEETTTTEEEEEEECGGGSC----SSTTCCSCSEEEEEEE------TTEEEEEETTTTEEEEEEBCTTSCB-CC
T ss_pred ccccceeeeccCCcceeEecCCccce----eeccCccccccccccc------CCceeeecCCCCeEEeccccccccc-cc
Confidence 89999999988664332211110000 0001111234556665 3456667778888888754432211 11
Q ss_pred eeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEE---cCCCc
Q 021036 235 VGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAV---SPGNL 311 (318)
Q Consensus 235 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~---sp~~~ 311 (318)
. ...........++++++|.++++...++.|..++..++........... ...++++| ++|++
T Consensus 201 ~-~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~-------------~~pt~vafg~~~~D~~ 266 (302)
T d2p4oa1 201 P-EIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGV-------------IGSTAVAFGQTEGDCT 266 (302)
T ss_dssp C-EEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTC-------------TTEEEEEECCSTTTTT
T ss_pred c-ccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCC-------------CCceEEEEcCCCCCCC
Confidence 1 1112334567899999999888888889999997765433222221111 14689999 67887
Q ss_pred EEEE
Q 021036 312 VVAM 315 (318)
Q Consensus 312 ~l~~ 315 (318)
.|..
T Consensus 267 ~Lyv 270 (302)
T d2p4oa1 267 AIYV 270 (302)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6654
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.89 E-value=5.8e-07 Score=70.66 Aligned_cols=181 Identities=9% Similarity=-0.032 Sum_probs=113.9
Q ss_pred cccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeC
Q 021036 76 PQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSS 155 (318)
Q Consensus 76 ~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~ 155 (318)
..++++++++++++....+.+++++-.+.. .+....+ .....++++ .++++++++-..
T Consensus 60 ~gvav~~~g~i~v~d~~~~~i~~~~~~~~~--------------~~~~~~~-~~~p~~iav-------d~~g~i~v~d~~ 117 (260)
T d1rwia_ 60 QGLAVDGAGTVYVTDFNNRVVTLAAGSNNQ--------------TVLPFDG-LNYPEGLAV-------DTQGAVYVADRG 117 (260)
T ss_dssp CCEEECTTCCEEEEETTTEEEEECTTCSCC--------------EECCCCS-CCSEEEEEE-------CTTCCEEEEEGG
T ss_pred eEEEEcCCCCEEEeeeeeceeeeeeeccce--------------eeeeeee-eeecccccc-------cccceeEeeccc
Confidence 445666667888887777777766554422 2222222 345688999 788888777666
Q ss_pred CCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEe
Q 021036 156 DGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKV 235 (318)
Q Consensus 156 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 235 (318)
+..+..++........ +.... ......++++ ++++++++...++.|..+ +...... ..
T Consensus 118 ~~~~~~~~~~~~~~~~-~~~~~-------------~~~p~~i~~~-----~~g~~~v~~~~~~~i~~~--d~~~~~~-~~ 175 (260)
T d1rwia_ 118 NNRVVKLAAGSKTQTV-LPFTG-------------LNDPDGVAVD-----NSGNVYVTDTDNNRVVKL--EAESNNQ-VV 175 (260)
T ss_dssp GTEEEEECTTCSSCEE-CCCCS-------------CCSCCEEEEC-----TTCCEEEEEGGGTEEEEE--CTTTCCE-EE
T ss_pred cccccccccccceeee-eeecc-------------cCCcceeeec-----CCCCEeeecccccccccc--cccccee-ee
Confidence 6777777765433211 11110 1244678888 899988888888888888 4433321 11
Q ss_pred eeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 236 GSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 236 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
...........|+++++|.++++....+.|..++..+.......... .....+|+++++|.++++
T Consensus 176 -~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~--------------~~~P~~i~~d~~g~l~va 240 (260)
T d1rwia_ 176 -LPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTG--------------LNTPLAVAVDSDRTVYVA 240 (260)
T ss_dssp -CCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCS--------------CCCEEEEEECTTCCEEEE
T ss_pred -eeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCC--------------CCCeEEEEEeCCCCEEEE
Confidence 11233445688999999998888888888888876554333222111 124579999999877655
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.84 E-value=1.1e-06 Score=72.69 Aligned_cols=118 Identities=13% Similarity=0.036 Sum_probs=72.9
Q ss_pred ceeEEEEeeccCCCCceEEEEEe-CCCcEEEeeeccCCCeeeEeeeee--cccCceeEEEEcCCCCEEE-EecCCCcEEE
Q 021036 193 PISVLSLILPVQSPRLMLLAVGK-GSGSFDLWKCDISCNKFDKVGSYN--AHDQVVTGLAWAFDGCCLY-SCSQDNFVRS 268 (318)
Q Consensus 193 ~v~~l~~~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~-s~~~d~~v~i 268 (318)
.+.++.|+ |+|+++++++ ....|.+|+++... ......... ........++|+|+++++. +.-.+++|.+
T Consensus 146 h~h~v~~s-----PdG~~l~v~d~g~d~v~~~~~~~~g-~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v 219 (365)
T d1jofa_ 146 GIHGMVFD-----PTETYLYSADLTANKLWTHRKLASG-EVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICE 219 (365)
T ss_dssp CEEEEEEC-----TTSSEEEEEETTTTEEEEEEECTTS-CEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred cceEEEEC-----CCCCEEEEeeCCCCEEEEEEccCCC-ceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEE
Confidence 46789999 9999888776 34578888655433 322333322 2345678999999999774 4556789999
Q ss_pred EEecCCceeeeecCCCCCCcc-----ccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 269 WIFHGNSLSQVSIPTNTPGLQ-----SCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 269 wd~~~~~~~~~~~~~~~~~~~-----~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
|++..+....+......+.+. .......+......+.++|||++|+++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvs 272 (365)
T d1jofa_ 220 YVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS 272 (365)
T ss_dssp EEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred EEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEE
Confidence 999765433221111100000 001122344566789999999998775
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.74 E-value=6.7e-07 Score=74.93 Aligned_cols=149 Identities=12% Similarity=-0.047 Sum_probs=86.9
Q ss_pred EEEEecCCCcEEEEEccCCcccccccc--------ccCCc--------eeEEeeeccccccEEEEEeeeecCCCCCCCcE
Q 021036 86 ILAVGGRSGKVSLWRICVPKCYSVEDC--------KVPTT--------AVLIGLFQAHNSWITSISLAVLSSDSSNPQVL 149 (318)
Q Consensus 86 ~l~~g~~dg~i~iw~~~~~~~~~~~~~--------~~~~~--------~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~ 149 (318)
.+++|+.+|.|++|++.+++.+...-. ..... ......-..|......... .++|++
T Consensus 13 ~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~g-------tpDGr~ 85 (441)
T d1qnia2 13 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDG-------RYDGKY 85 (441)
T ss_dssp EEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETT-------EEEEEE
T ss_pred EEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecc-------cCCCCE
Confidence 467888999999999988764432100 00000 0000001123333444444 678988
Q ss_pred EEEEe-CCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceE--EEEEeCCCcEEE----
Q 021036 150 LVTGS-SDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLML--LAVGKGSGSFDL---- 222 (318)
Q Consensus 150 l~s~~-~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~--l~~~~~dg~i~v---- 222 (318)
|++.. .+.+|.++|+.+++....+.... ...+..++++ |+|+. ++..+ +..+.+
T Consensus 86 lfV~d~~~~rVavIDl~t~k~~~ii~iP~-------------g~gphgi~~s-----pdg~t~YV~~~~-~~~v~~~~dg 146 (441)
T d1qnia2 86 LFINDKANTRVARIRLDIMKTDKITHIPN-------------VQAIHGLRLQ-----KVPKTNYVFCNA-EFVIPQPNDG 146 (441)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECTT-------------CCCEEEEEEC-----CSSBCCEEEEEE-CSCEESSCSS
T ss_pred EEEEcCCCCEEEEEECCCCcEeeEEecCC-------------CCCccceEEe-----ccCCEEEEEecc-CCcccccCcc
Confidence 86665 67899999999998777654321 2367889998 88884 44333 222221
Q ss_pred -----------e-eeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCC
Q 021036 223 -----------W-KCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQD 263 (318)
Q Consensus 223 -----------w-~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 263 (318)
+ -+|..+.+ ...+... .+....+.|+|+|+++++.+.+
T Consensus 147 ~~~~~~~~~~~~~~iD~~t~~--v~~qI~v-~~~p~~v~~spdGk~a~vt~~n 196 (441)
T d1qnia2 147 TDFSLDNSYTMFTAIDAETMD--VAWQVIV-DGNLDNTDADYTGKYATSTCYN 196 (441)
T ss_dssp SCCCGGGEEEEEEEEETTTCS--EEEEEEE-SSCCCCEEECSSSSEEEEEESC
T ss_pred cccccccccceEEeecCccce--eeEEEec-CCCccceEECCCCCEEEEEecC
Confidence 0 01444433 2233332 2356789999999988877654
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.71 E-value=5.3e-06 Score=64.94 Aligned_cols=177 Identities=15% Similarity=0.109 Sum_probs=99.2
Q ss_pred eeecccccCCCCcccccccCCCCCccEEEEec-CCCc--EEEEEccCCccccccccccCCceeEEeeeccccccEEEEEe
Q 021036 60 VAWSPVLRLSSKKYPVPQNGSSNWFSILAVGG-RSGK--VSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISL 136 (318)
Q Consensus 60 ~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 136 (318)
.+|+|++ +.||-.. ..+. +.+.+...+. ...+..+........|
T Consensus 44 P~wSPDG------------------k~IAf~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~ 90 (269)
T d2hqsa1 44 PAWSPDG------------------SKLAYVTFESGRSALVIQTLANGA---------------VRQVASFPRHNGAPAF 90 (269)
T ss_dssp EEECTTS------------------SEEEEEECTTSSCEEEEEETTTCC---------------EEEEECCSSCEEEEEE
T ss_pred eEECCCC------------------CEEEEEEeeccCcceeeeecccCc---------------eeEEeeeeccccccee
Confidence 7899988 7776543 3333 4445555432 2344556778888999
Q ss_pred eeecCCCCCCCcEEEEEeC-CCcEEEE--ECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCc-eEEE
Q 021036 137 AVLSSDSSNPQVLLVTGSS-DGSVRIW--DGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRL-MLLA 212 (318)
Q Consensus 137 ~p~~~~~~~~~~~l~s~~~-d~~v~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~-~~l~ 212 (318)
+++|+.++.... ++...++ ............. ........++ +++ ..++
T Consensus 91 -------spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~-----~~~~~~~~ 143 (269)
T d2hqsa1 91 -------SPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG---------------RSNNTEPTWF-----PDSQNLAF 143 (269)
T ss_dssp -------CTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCC---------------SSCEEEEEEC-----TTSSEEEE
T ss_pred -------cCCCCeeeEeeecCCccceeecccccccceeeeec---------------cccccccccc-----ccccccee
Confidence 899988887654 3333322 2222222211111 1122233344 444 4555
Q ss_pred EEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCC-CcEEEEEec--CCceeeeecCCCCCCcc
Q 021036 213 VGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQD-NFVRSWIFH--GNSLSQVSIPTNTPGLQ 289 (318)
Q Consensus 213 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-~~v~iwd~~--~~~~~~~~~~~~~~~~~ 289 (318)
+...+|...+|..+....... .+...........|+|+++.++..+.+ +...+|... .+..... ...
T Consensus 144 ~~~~~g~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~------ 213 (269)
T d2hqsa1 144 TSDQAGRPQVYKVNINGGAPQ---RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVL-SST------ 213 (269)
T ss_dssp EECTTSSCEEEEEETTSSCCE---ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEEC-CCS------
T ss_pred cccccCCceEeeeecccccce---eeecccccccccccccccceeEEEeecCCceeeeEeecccccceEe-ecC------
Confidence 566677777776566555422 233455667778999999987766544 444555443 3333222 111
Q ss_pred ccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 290 SCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 290 ~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
.......|+|||+.|+-
T Consensus 214 ---------~~~~~p~~SPDG~~i~f 230 (269)
T d2hqsa1 214 ---------FLDETPSLAPNGTMVIY 230 (269)
T ss_dssp ---------SSCEEEEECTTSSEEEE
T ss_pred ---------ccccceEECCCCCEEEE
Confidence 24467899999998874
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.67 E-value=1.2e-06 Score=68.77 Aligned_cols=181 Identities=12% Similarity=0.037 Sum_probs=107.4
Q ss_pred ccCCCCCccEEEEe-cCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeC
Q 021036 77 QNGSSNWFSILAVG-GRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSS 155 (318)
Q Consensus 77 ~~~~s~~~~~l~~g-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~ 155 (318)
+++++++|+++++. +..+.+..++..... .......+. .....+++ .++++++++...
T Consensus 18 ~vavd~dG~i~v~~~~~~~~i~~~~~~~~~-------------~~~~~~~~~-~~p~gvav-------~~~g~i~v~d~~ 76 (260)
T d1rwia_ 18 GVAVDSAGNVYVTSEGMYGRVVKLATGSTG-------------TTVLPFNGL-YQPQGLAV-------DGAGTVYVTDFN 76 (260)
T ss_dssp EEEECTTCCEEEEECSSSCEEEEEC----C-------------EEECCCCSC-CSCCCEEE-------CTTCCEEEEETT
T ss_pred EEEEcCCCCEEEEEcCCCCEEEEEcCCCce-------------EEEeccCCc-cCceEEEE-------cCCCCEEEeeee
Confidence 34555555766654 455677766665421 122222222 23467888 788888877777
Q ss_pred CCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEe
Q 021036 156 DGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKV 235 (318)
Q Consensus 156 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 235 (318)
.+.+++++-.++........ ......+++. ++++++++-..+..+..+ +...... ..
T Consensus 77 ~~~i~~~~~~~~~~~~~~~~---------------~~~p~~iavd-----~~g~i~v~d~~~~~~~~~--~~~~~~~-~~ 133 (260)
T d1rwia_ 77 NRVVTLAAGSNNQTVLPFDG---------------LNYPEGLAVD-----TQGAVYVADRGNNRVVKL--AAGSKTQ-TV 133 (260)
T ss_dssp TEEEEECTTCSCCEECCCCS---------------CCSEEEEEEC-----TTCCEEEEEGGGTEEEEE--CTTCSSC-EE
T ss_pred eceeeeeeeccceeeeeeee---------------eeeccccccc-----ccceeEeecccccccccc--cccccee-ee
Confidence 67777665544433322221 1245788998 888888877777777776 3333221 11
Q ss_pred eeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 236 GSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 236 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
.... ......+++++++++++++...++.|..++..+........... ....+|+++++|.++++
T Consensus 134 ~~~~-~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~--------------~~p~gi~~d~~g~l~vs 198 (260)
T d1rwia_ 134 LPFT-GLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDI--------------TAPWGIAVDEAGTVYVT 198 (260)
T ss_dssp CCCC-SCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSC--------------CSEEEEEECTTCCEEEE
T ss_pred eeec-ccCCcceeeecCCCCEeeeccccccccccccccceeeeeecccc--------------CCCccceeeeeeeeeee
Confidence 1112 22345789999999988888888899999887655443322211 24578899998877665
Q ss_pred E
Q 021036 316 V 316 (318)
Q Consensus 316 ~ 316 (318)
-
T Consensus 199 d 199 (260)
T d1rwia_ 199 E 199 (260)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.67 E-value=2e-05 Score=62.24 Aligned_cols=145 Identities=10% Similarity=0.088 Sum_probs=96.7
Q ss_pred cccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCC
Q 021036 128 NSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPR 207 (318)
Q Consensus 128 ~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~ 207 (318)
......++. .+++.++++....+.+.+++.. ++.+..+.... +......+++. ++
T Consensus 113 ~~~p~~~av-------d~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~------------~~~~~~~i~~d-----~~ 167 (279)
T d1q7fa_ 113 LQHPRGVTV-------DNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSK------------HLEFPNGVVVN-----DK 167 (279)
T ss_dssp CSCEEEEEE-------CTTSCEEEEETTTTEEEEECTT-SCEEEEEECTT------------TCSSEEEEEEC-----SS
T ss_pred ccccceecc-------ccCCcEEEEeeccceeeEeccC-Cceeecccccc------------cccccceeeec-----cc
Confidence 455678888 7888888887777888888764 44444432211 22356778888 88
Q ss_pred ceEEEEEeCCCcEEEeeeccCCCeeeEeeeee--cccCceeEEEEcCCCCEEEEec-CCCcEEEEEecCCceeeeecCCC
Q 021036 208 LMLLAVGKGSGSFDLWKCDISCNKFDKVGSYN--AHDQVVTGLAWAFDGCCLYSCS-QDNFVRSWIFHGNSLSQVSIPTN 284 (318)
Q Consensus 208 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~ 284 (318)
++++++....+.|++|+ .... .+.++. +.......|+++++|+++++-. .++.|.+|+........+.....
T Consensus 168 g~i~v~d~~~~~V~~~d--~~G~---~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~~~~~~~~~~~ 242 (279)
T d1q7fa_ 168 QEIFISDNRAHCVKVFN--YEGQ---YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVK 242 (279)
T ss_dssp SEEEEEEGGGTEEEEEE--TTCC---EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSC
T ss_pred eeEEeeeccccceeeee--cCCc---eeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCCCCEEEEEeCCCC
Confidence 99999999999999994 4333 333332 3445678999999999777654 34579999865433333332222
Q ss_pred CCCccccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 285 TPGLQSCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 285 ~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
. .....|++.|||.++++
T Consensus 243 ~-------------~~p~~vav~~dG~l~V~ 260 (279)
T d1q7fa_ 243 H-------------AQCFDVALMDDGSVVLA 260 (279)
T ss_dssp C-------------SCEEEEEEETTTEEEEE
T ss_pred C-------------CCEeEEEEeCCCcEEEE
Confidence 1 14589999999987664
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.63 E-value=4.3e-06 Score=69.01 Aligned_cols=179 Identities=8% Similarity=-0.056 Sum_probs=104.7
Q ss_pred ccccCCCCCccEEEEecC-CCcEEEEEccCCccccccccccCCceeEEeee--ccccccEEEEEeeeecCCCCCCCcEEE
Q 021036 75 VPQNGSSNWFSILAVGGR-SGKVSLWRICVPKCYSVEDCKVPTTAVLIGLF--QAHNSWITSISLAVLSSDSSNPQVLLV 151 (318)
Q Consensus 75 v~~~~~s~~~~~l~~g~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~p~~~~~~~~~~~l~ 151 (318)
+.++.++|+|++++++.. ...|.+|+...... ....... .........+.| +++++++.
T Consensus 147 ~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~-----------~~~~~~~~~~~~g~gPr~i~f-------~pdg~~~y 208 (365)
T d1jofa_ 147 IHGMVFDPTETYLYSADLTANKLWTHRKLASGE-----------VELVGSVDAPDPGDHPRWVAM-------HPTGNYLY 208 (365)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTSC-----------EEEEEEEECSSTTCCEEEEEE-------CTTSSEEE
T ss_pred ceEEEECCCCCEEEEeeCCCCEEEEEEccCCCc-----------eeeccceeecCCCCceEEEEE-------CCCCceEE
Confidence 568889999998877653 45788887654321 1111121 123456788999 89998876
Q ss_pred EEe-CCCcEEEEECCCcceeeeecccccccccce-----eeeeecccceeEEEEeeccCCCCceEEEEEeC------CCc
Q 021036 152 TGS-SDGSVRIWDGYIQELQKSAEAHCVPFSLLK-----EVVTVNTVPISVLSLILPVQSPRLMLLAVGKG------SGS 219 (318)
Q Consensus 152 s~~-~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~------dg~ 219 (318)
+.. .+++|.+|++..++..........+..... ............+.++ |+|++|+++.. .+.
T Consensus 209 v~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s-----pdG~~lyvsnr~~~~~~~~~ 283 (365)
T d1jofa_ 209 ALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALT-----FSGKYMFASSRANKFELQGY 283 (365)
T ss_dssp EEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEEC-----TTSSEEEEEEEESSTTSCCE
T ss_pred EeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEEC-----CCCCEEEEEcccCCCccceE
Confidence 655 578999999876654322221111110000 0001122235578888 99999888752 223
Q ss_pred EEEeeeccCCCeeeEe--eeeecccCceeEEEEcC-CCCEEEEe-cCCCcEEEEEecCCce
Q 021036 220 FDLWKCDISCNKFDKV--GSYNAHDQVVTGLAWAF-DGCCLYSC-SQDNFVRSWIFHGNSL 276 (318)
Q Consensus 220 i~vw~~~~~~~~~~~~--~~~~~h~~~v~~~~~~~-~~~~l~s~-~~d~~v~iwd~~~~~~ 276 (318)
|..|+++......+.. ...........+++++| +|++|+++ ..++.|.+|++.....
T Consensus 284 i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~l 344 (365)
T d1jofa_ 284 IAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFL 344 (365)
T ss_dssp EEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEE
T ss_pred EEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCcC
Confidence 7777554332211111 11112234567899998 78977655 5678999999876544
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.57 E-value=3.2e-05 Score=60.29 Aligned_cols=92 Identities=11% Similarity=0.002 Sum_probs=60.8
Q ss_pred ceeEEEEeeccCCCCceEEEEEe-CCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecC---CCcEEE
Q 021036 193 PISVLSLILPVQSPRLMLLAVGK-GSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQ---DNFVRS 268 (318)
Q Consensus 193 ~v~~l~~~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~---d~~v~i 268 (318)
......|+ |+++.++..+ ..+...+|..+...+.. ....+........|+|||++|+..+. ...|++
T Consensus 172 ~~~~~~~s-----pdg~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~ 242 (269)
T d2hqsa1 172 QNQDADVS-----SDGKFMVMVSSNGGQQHIAKQDLATGGV----QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNL 242 (269)
T ss_dssp EEEEEEEC-----TTSSEEEEEEECSSCEEEEEEETTTCCE----EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEE
T ss_pred cccccccc-----cccceeEEEeecCCceeeeEeecccccc----eEeecCccccceEECCCCCEEEEEEcCCCCcEEEE
Confidence 34556777 8888776655 55566677656655542 12234455677899999998875443 346889
Q ss_pred EEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcC
Q 021036 269 WIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSP 308 (318)
Q Consensus 269 wd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp 308 (318)
+++.++....+.... +.+...+|+|
T Consensus 243 ~~~dg~~~~~lt~~~---------------g~~~~p~WSP 267 (269)
T d2hqsa1 243 VSTDGRFKARLPATD---------------GQVKFPAWSP 267 (269)
T ss_dssp EETTSCCEEECCCSS---------------SEEEEEEECC
T ss_pred EECCCCCEEEEeCCC---------------CcEEeEEeCC
Confidence 999887766544433 2667889998
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.57 E-value=3.4e-06 Score=67.63 Aligned_cols=154 Identities=9% Similarity=-0.011 Sum_probs=97.8
Q ss_pred ccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCC
Q 021036 77 QNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSD 156 (318)
Q Consensus 77 ~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d 156 (318)
.++++++|+++++...+++|..|+.... ...+......+.+++| .++|+++++...+
T Consensus 32 ~iAv~pdG~l~vt~~~~~~I~~i~p~g~----------------~~~~~~~~~~~~gla~-------~~dG~l~v~~~~~ 88 (302)
T d2p4oa1 32 NLASAPDGTIFVTNHEVGEIVSITPDGN----------------QQIHATVEGKVSGLAF-------TSNGDLVATGWNA 88 (302)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTTCC----------------EEEEEECSSEEEEEEE-------CTTSCEEEEEECT
T ss_pred CEEECCCCCEEEEeCCCCEEEEEeCCCC----------------EEEEEcCCCCcceEEE-------cCCCCeEEEecCC
Confidence 4555666699999999998888886532 1233445567899999 8999999998888
Q ss_pred CcEEEEECCCcceee-eecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEe
Q 021036 157 GSVRIWDGYIQELQK-SAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKV 235 (318)
Q Consensus 157 ~~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 235 (318)
+.+..++........ .+... ......+.+++. ++++++++.+.++.+..+ +.........
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~------------~~~~~~n~i~~~-----~~g~~~v~~~~~~~i~~~--~~~~~~~~~~ 149 (302)
T d2p4oa1 89 DSIPVVSLVKSDGTVETLLTL------------PDAIFLNGITPL-----SDTQYLTADSYRGAIWLI--DVVQPSGSIW 149 (302)
T ss_dssp TSCEEEEEECTTSCEEEEEEC------------TTCSCEEEEEES-----SSSEEEEEETTTTEEEEE--ETTTTEEEEE
T ss_pred ceEEEEEecccccceeecccc------------CCccccceeEEc-----cCCCEEeeccccccceee--eccCCcceeE
Confidence 888888765432111 11100 112356788888 899998888888877776 5555442111
Q ss_pred eeee---------cccCceeEEEEcCCCCEEEEecCCCcEEEEEecCC
Q 021036 236 GSYN---------AHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGN 274 (318)
Q Consensus 236 ~~~~---------~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 274 (318)
... ........+.++. +.++++.+..+.|..++....
T Consensus 150 -~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~ 195 (302)
T d2p4oa1 150 -LEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDST 195 (302)
T ss_dssp -EECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTT
T ss_pred -ecCCccceeeccCcccccccccccC-CceeeecCCCCeEEecccccc
Confidence 111 1112334555543 235566677888888887653
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.57 E-value=9.1e-05 Score=59.55 Aligned_cols=109 Identities=11% Similarity=0.065 Sum_probs=67.6
Q ss_pred ceeEEEEeeccCCCCceEE-EEEeCCCcEEEeeeccCCCeeeEeee----eecccCceeEEEEcCCCCEEEEecCCCcEE
Q 021036 193 PISVLSLILPVQSPRLMLL-AVGKGSGSFDLWKCDISCNKFDKVGS----YNAHDQVVTGLAWAFDGCCLYSCSQDNFVR 267 (318)
Q Consensus 193 ~v~~l~~~~~~~~~~~~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~----~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~ 267 (318)
..+.++|+ |+++.| ++-+..+.|+.|+++........... ........-.++++++|++.++....+.|.
T Consensus 178 ~pnGia~s-----~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~ 252 (319)
T d2dg1a1 178 VANGIALS-----TDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVL 252 (319)
T ss_dssp SEEEEEEC-----TTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEE
T ss_pred eeeeeeec-----cccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEE
Confidence 35679999 898765 44457888999976544322111111 111122356799999999888888899999
Q ss_pred EEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 268 SWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 268 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
+||.....+..+..... ..++...+++++|.|++..+.+
T Consensus 253 ~~~p~G~~l~~i~~P~~---------~~~~~~~~~~~~~~~~~~~~~~ 291 (319)
T d2dg1a1 253 VFNKRGYPIGQILIPGR---------DEGHMLRSTHPQFIPGTNQLII 291 (319)
T ss_dssp EECTTSCEEEEEECTTG---------GGTCSCBCCEEEECTTSCEEEE
T ss_pred EECCCCcEEEEEeCCCc---------CCCcCceeeeEEEeCCCCEEEE
Confidence 99975544444433221 1123335678899887655443
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.52 E-value=3.4e-05 Score=60.82 Aligned_cols=183 Identities=10% Similarity=0.126 Sum_probs=110.6
Q ss_pred ccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeecc------ccccEEEEEeeeecCCCCCCCc
Q 021036 75 VPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQA------HNSWITSISLAVLSSDSSNPQV 148 (318)
Q Consensus 75 v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~------h~~~v~~~~~~p~~~~~~~~~~ 148 (318)
-..++++++++++++-..++.|++||.+ ++ .+..+.. ....-..+.+ ....+.
T Consensus 25 P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~--------------~~~~~~~~~~~~~~~~~p~~~~~------~~~~~~ 83 (279)
T d1q7fa_ 25 PSGVAVNAQNDIIVADTNNHRIQIFDKE-GR--------------FKFQFGECGKRDSQLLYPNRVAV------VRNSGD 83 (279)
T ss_dssp EEEEEECTTCCEEEEEGGGTEEEEECTT-SC--------------EEEEECCBSSSTTCBSSEEEEEE------ETTTTE
T ss_pred ccEEEEcCCCCEEEEECCCCEEEEEeCC-CC--------------EEEEecccCCCcccccccccccc------cccccc
Confidence 3556666777988887888899999876 32 2222211 1112334444 123344
Q ss_pred EEEEE-eCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeecc
Q 021036 149 LLVTG-SSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDI 227 (318)
Q Consensus 149 ~l~s~-~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 227 (318)
.+++. +.++.|..++.. ++....+.... ......+++. +++.++++....+.+.++ +.
T Consensus 84 ~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~-------------~~~p~~~avd-----~~G~i~v~~~~~~~~~~~--~~ 142 (279)
T d1q7fa_ 84 IIVTERSPTHQIQIYNQY-GQFVRKFGATI-------------LQHPRGVTVD-----NKGRIIVVECKVMRVIIF--DQ 142 (279)
T ss_dssp EEEEECGGGCEEEEECTT-SCEEEEECTTT-------------CSCEEEEEEC-----TTSCEEEEETTTTEEEEE--CT
T ss_pred cceeccCCcccccccccc-ccceeecCCCc-------------ccccceeccc-----cCCcEEEEeeccceeeEe--cc
Confidence 44443 345677777654 44444432211 1245678888 889988888878888887 44
Q ss_pred CCCeeeEeeee--ecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEE
Q 021036 228 SCNKFDKVGSY--NAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMA 305 (318)
Q Consensus 228 ~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 305 (318)
.. + .+.++ ..+......+++.+++..+++....+.|++||.....+.++.... ......+|+
T Consensus 143 ~g-~--~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~~~~~g~~g-------------~~~~P~gia 206 (279)
T d1q7fa_ 143 NG-N--VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEG-------------ITNYPIGVG 206 (279)
T ss_dssp TS-C--EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTT-------------TSCSEEEEE
T ss_pred CC-c--eeecccccccccccceeeeccceeEEeeeccccceeeeecCCceeeeecccc-------------cccCCcccc
Confidence 33 3 33333 235567788999999998888888999999998765554442211 112345666
Q ss_pred EcCCCcEEEE
Q 021036 306 VSPGNLVVAM 315 (318)
Q Consensus 306 ~sp~~~~l~~ 315 (318)
++++|.++++
T Consensus 207 vD~~G~i~Va 216 (279)
T d1q7fa_ 207 INSNGEILIA 216 (279)
T ss_dssp ECTTCCEEEE
T ss_pred cccCCeEEEE
Confidence 6666665543
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.48 E-value=8.9e-05 Score=59.47 Aligned_cols=180 Identities=9% Similarity=-0.001 Sum_probs=100.8
Q ss_pred cCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEee-eccc-cccEEEEEeeeecCCCCCCCcEEEEEeC
Q 021036 78 NGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGL-FQAH-NSWITSISLAVLSSDSSNPQVLLVTGSS 155 (318)
Q Consensus 78 ~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-~~~h-~~~v~~~~~~p~~~~~~~~~~~l~s~~~ 155 (318)
+.++++++.++++...+.|...+.+..... .... ..+. -...+.+.+ .++|.+.++-..
T Consensus 76 l~~~~dg~~l~vad~~~~i~~~~~~g~~~~------------~~~~~~~g~~~~~pndl~~-------d~~G~lyvtd~~ 136 (314)
T d1pjxa_ 76 CQCDRDANQLFVADMRLGLLVVQTDGTFEE------------IAKKDSEGRRMQGCNDCAF-------DYEGNLWITAPA 136 (314)
T ss_dssp EEECSSSSEEEEEETTTEEEEEETTSCEEE------------CCSBCTTSCBCBCCCEEEE-------CTTSCEEEEECB
T ss_pred EEEeCCCCEEEEEECCCeEEEEeCCCcEEE------------EEeccccccccCCCcEEEE-------CCCCCEEEecCc
Confidence 444455587777776677888887653210 0000 0111 113577888 788887776432
Q ss_pred ---------------CCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCce-----EEEEEe
Q 021036 156 ---------------DGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLM-----LLAVGK 215 (318)
Q Consensus 156 ---------------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~-----~l~~~~ 215 (318)
+|.|..++.. ++...... .-...+.++|+ ++++ ++++-+
T Consensus 137 ~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~---------------~~~~pNGi~~~-----~d~d~~~~~lyv~d~ 195 (314)
T d1pjxa_ 137 GEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT---------------AFQFPNGIAVR-----HMNDGRPYQLIVAET 195 (314)
T ss_dssp CBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE---------------EESSEEEEEEE-----ECTTSCEEEEEEEET
T ss_pred cCcccccccceeccCCceEEEEeec-CceeEeeC---------------CcceeeeeEEC-----CCCCcceeEEEEEee
Confidence 1233333322 22111111 11134678888 5543 455556
Q ss_pred CCCcEEEeeeccCCCeeeE---eeeeec-ccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceee-eecCCCCCCccc
Q 021036 216 GSGSFDLWKCDISCNKFDK---VGSYNA-HDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQ-VSIPTNTPGLQS 290 (318)
Q Consensus 216 ~dg~i~vw~~~~~~~~~~~---~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~-~~~~~~~~~~~~ 290 (318)
..+.|..|+++.. +.... ...+.+ .....-.++++.+|++.++....+.|.+||..++.... +....
T Consensus 196 ~~~~i~~~d~~~~-g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~------- 267 (314)
T d1pjxa_ 196 PTKKLWSYDIKGP-AKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPF------- 267 (314)
T ss_dssp TTTEEEEEEEEET-TEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSS-------
T ss_pred cccceEEeeccCc-cccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCC-------
Confidence 7888888866533 22111 112221 12235679999999988877778999999988766543 32221
Q ss_pred cccCCCcceeeeEEEEcCCCcEE
Q 021036 291 CTDLPDAFVSCLGMAVSPGNLVV 313 (318)
Q Consensus 291 ~~~~~~h~~~v~~v~~sp~~~~l 313 (318)
....+++|.||++.|
T Consensus 268 --------~~~t~~afg~d~~~l 282 (314)
T d1pjxa_ 268 --------EKPSNLHFKPQTKTI 282 (314)
T ss_dssp --------SCEEEEEECTTSSEE
T ss_pred --------CCEEEEEEeCCCCEE
Confidence 156899999998644
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.42 E-value=0.00018 Score=56.98 Aligned_cols=181 Identities=10% Similarity=-0.005 Sum_probs=108.6
Q ss_pred ccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeecc--ccccEEEEEeeeecCCCCCCCcEEEEEe
Q 021036 77 QNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQA--HNSWITSISLAVLSSDSSNPQVLLVTGS 154 (318)
Q Consensus 77 ~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~p~~~~~~~~~~~l~s~~ 154 (318)
++.+..++.+++++ .+ -+.++|..+++. +.+..... ....++.+.+ .++|++.++..
T Consensus 63 ~i~~~~dg~l~va~-~~-gl~~~d~~tg~~------------~~l~~~~~~~~~~~~nd~~v-------d~~G~iw~~~~ 121 (295)
T d2ghsa1 63 ALAKISDSKQLIAS-DD-GLFLRDTATGVL------------TLHAELESDLPGNRSNDGRM-------HPSGALWIGTM 121 (295)
T ss_dssp EEEEEETTEEEEEE-TT-EEEEEETTTCCE------------EEEECSSTTCTTEEEEEEEE-------CTTSCEEEEEE
T ss_pred EEEEecCCCEEEEE-eC-ccEEeeccccee------------eEEeeeecCCCcccceeeEE-------CCCCCEEEEec
Confidence 33333444676654 44 488899988652 22222211 1235788888 88888777654
Q ss_pred CC----CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEE-EEEeCCCcEEEeeeccCC
Q 021036 155 SD----GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLL-AVGKGSGSFDLWKCDISC 229 (318)
Q Consensus 155 ~d----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l-~~~~~dg~i~vw~~~~~~ 229 (318)
.+ +.-.+|.+..++....... -...+.++++ ++++.+ ++-+..+.|..|+++...
T Consensus 122 ~~~~~~~~g~l~~~~~g~~~~~~~~---------------~~~~Ng~~~s-----~d~~~l~~~dt~~~~I~~~~~d~~~ 181 (295)
T d2ghsa1 122 GRKAETGAGSIYHVAKGKVTKLFAD---------------ISIPNSICFS-----PDGTTGYFVDTKVNRLMRVPLDART 181 (295)
T ss_dssp ETTCCTTCEEEEEEETTEEEEEEEE---------------ESSEEEEEEC-----TTSCEEEEEETTTCEEEEEEBCTTT
T ss_pred cccccccceeEeeecCCcEEEEeec---------------cCCcceeeec-----CCCceEEEeecccceeeEeeecccc
Confidence 22 2345555555543322211 1134678888 787754 555678889998776544
Q ss_pred Ce----eeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEE
Q 021036 230 NK----FDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMA 305 (318)
Q Consensus 230 ~~----~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 305 (318)
.. ......+.+..+....++++.+|.+.++.-..+.|..||..+.....+..... .+++++
T Consensus 182 ~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G~~~~~i~lP~~---------------~~T~~~ 246 (295)
T d2ghsa1 182 GLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEVPGK---------------QTTCPA 246 (295)
T ss_dssp CCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEEECSCS---------------BEEEEE
T ss_pred cccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCCCcEeeEecCCCC---------------ceEEEE
Confidence 32 11122223344567889999999977777677889999976555555544322 578999
Q ss_pred Ec-CCCcEE
Q 021036 306 VS-PGNLVV 313 (318)
Q Consensus 306 ~s-p~~~~l 313 (318)
|- ||.+.|
T Consensus 247 FGG~d~~~L 255 (295)
T d2ghsa1 247 FIGPDASRL 255 (295)
T ss_dssp EESTTSCEE
T ss_pred EeCCCCCEE
Confidence 96 565444
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.34 E-value=1e-05 Score=68.91 Aligned_cols=207 Identities=9% Similarity=-0.025 Sum_probs=113.0
Q ss_pred EEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEe---------c
Q 021036 21 VAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVG---------G 91 (318)
Q Consensus 21 ~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g---------~ 91 (318)
+.-..++.+.+||+.+++....+....+.. ..+....|+|++ ++++.. +
T Consensus 31 ~~~~~~g~i~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~SpD~------------------~~vl~~~~~~~~~r~s 88 (465)
T d1xfda1 31 IYREQKGTVRLWNVETNTSTVLIEGKKIES----LRAIRYEISPDR------------------EYALFSYNVEPIYQHS 88 (465)
T ss_dssp CCCCSSSCEEEBCGGGCCCEEEECTTTTTT----TTCSEEEECTTS------------------SEEEEEESCCCCSSSC
T ss_pred EEEeCCCcEEEEECCCCCEEEEEcCccccc----cccceeEECCCC------------------CeEEEEEcccceeEee
Confidence 334567889999998876544343322111 112224566666 776654 3
Q ss_pred CCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceee
Q 021036 92 RSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQK 171 (318)
Q Consensus 92 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~ 171 (318)
..+.+.++|+.+++. +.+.........+....| +|+|+.|+-.. ++.|.+.+...+...+
T Consensus 89 ~~~~~~i~d~~~~~~------------~~l~~~~~~~~~l~~~~w-------SPDG~~iafv~-~~nl~~~~~~~~~~~~ 148 (465)
T d1xfda1 89 YTGYYVLSKIPHGDP------------QSLDPPEVSNAKLQYAGW-------GPKGQQLIFIF-ENNIYYCAHVGKQAIR 148 (465)
T ss_dssp CCSEEEEEESSSCCC------------EECCCTTCCSCCCSBCCB-------CSSTTCEEEEE-TTEEEEESSSSSCCEE
T ss_pred ccccEEEEEccCCce------------eeccCccCCccccceeee-------ccCCceEEEEe-cceEEEEecCCCceEE
Confidence 457788999998652 233333333455667889 99999988765 6788888887765544
Q ss_pred eecccccccccceeeeeec---------ccceeEEEEeeccCCCCceEEEEEeC-CCcEEEeee----------------
Q 021036 172 SAEAHCVPFSLLKEVVTVN---------TVPISVLSLILPVQSPRLMLLAVGKG-SGSFDLWKC---------------- 225 (318)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~---------~~~v~~l~~~~~~~~~~~~~l~~~~~-dg~i~vw~~---------------- 225 (318)
......... +..+. ...-..+-|+ |||+.||.... +..|..+.+
T Consensus 149 lt~~g~~~~-----i~nG~~d~vyeee~~~~~~a~~WS-----PDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Y 218 (465)
T d1xfda1 149 VVSTGKEGV-----IYNGLSDWLYEEEILKTHIAHWWS-----PDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHY 218 (465)
T ss_dssp EECCCBTTT-----EEEEECCHHHHHTTSSSSEEEEEC-----TTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEEC
T ss_pred EecccCcce-----eeccccchhhhhhhccccceEEEC-----CCCCeEEEEEecccccceeecccccccccceeeeeec
Confidence 332111100 00000 0112456688 99998888652 233333321
Q ss_pred ---------------ccCCCeeeEeee----eecccCceeEEEEcCCCCEEEEecC-C---CcEEEEEecCCceeee
Q 021036 226 ---------------DISCNKFDKVGS----YNAHDQVVTGLAWAFDGCCLYSCSQ-D---NFVRSWIFHGNSLSQV 279 (318)
Q Consensus 226 ---------------~~~~~~~~~~~~----~~~h~~~v~~~~~~~~~~~l~s~~~-d---~~v~iwd~~~~~~~~~ 279 (318)
++.++....... .......+..+.|+|++++++.... + ..+.++|..++....+
T Consensus 219 p~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~ 295 (465)
T d1xfda1 219 PKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKK 295 (465)
T ss_dssp CBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEE
T ss_pred cccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEE
Confidence 221111000000 0011223567899999886655322 2 3588888888776544
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=1.3e-06 Score=74.66 Aligned_cols=154 Identities=12% Similarity=0.118 Sum_probs=94.2
Q ss_pred CCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe--------
Q 021036 144 SNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK-------- 215 (318)
Q Consensus 144 ~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~-------- 215 (318)
.+++.++. -..+|.|.+||+.+++....+..... ....+....++ ||++.++...
T Consensus 25 ~~~~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~-----------~~~~~~~~~~S-----pD~~~vl~~~~~~~~~r~ 87 (465)
T d1xfda1 25 ISDTEFIY-REQKGTVRLWNVETNTSTVLIEGKKI-----------ESLRAIRYEIS-----PDREYALFSYNVEPIYQH 87 (465)
T ss_dssp SSSSCBCC-CCSSSCEEEBCGGGCCCEEEECTTTT-----------TTTTCSEEEEC-----TTSSEEEEEESCCCCSSS
T ss_pred eCCCcEEE-EeCCCcEEEEECCCCCEEEEEcCccc-----------cccccceeEEC-----CCCCeEEEEEcccceeEe
Confidence 66666554 45678999999988765443332221 12255667788 9999887764
Q ss_pred -CCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCcc-cccc
Q 021036 216 -GSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQ-SCTD 293 (318)
Q Consensus 216 -~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~-~~~~ 293 (318)
..+.+.+| |+.++...++.........+....|||||+.||-.. ++.|.+.+..++...++........+. |..+
T Consensus 88 s~~~~~~i~--d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d 164 (465)
T d1xfda1 88 SYTGYYVLS--KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSD 164 (465)
T ss_dssp CCCSEEEEE--ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECC
T ss_pred eccccEEEE--EccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccc
Confidence 34567777 566665445544444455667789999999888765 667888887776655544332221111 1111
Q ss_pred CC---CcceeeeEEEEcCCCcEEEEEe
Q 021036 294 LP---DAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 294 ~~---~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
.. +-...-.++-|||||++||..+
T Consensus 165 ~vyeee~~~~~~a~~WSPDgk~iaf~~ 191 (465)
T d1xfda1 165 WLYEEEILKTHIAHWWSPDGTRLAYAA 191 (465)
T ss_dssp HHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred hhhhhhhccccceEEECCCCCeEEEEE
Confidence 00 0011124678999999999865
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.25 E-value=0.00031 Score=56.27 Aligned_cols=154 Identities=12% Similarity=0.020 Sum_probs=91.4
Q ss_pred CCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCC--
Q 021036 79 GSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSD-- 156 (318)
Q Consensus 79 ~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d-- 156 (318)
.++++|+++++-...+.|..|+.++++ ....+.........+++ .++|+++++...+
T Consensus 46 ~~D~~G~Ly~~D~~~g~I~ri~p~g~~--------------~~~~~~~~~~~p~gla~-------~~dG~l~va~~~~~~ 104 (319)
T d2dg1a1 46 NFDRQGQLFLLDVFEGNIFKINPETKE--------------IKRPFVSHKANPAAIKI-------HKDGRLFVCYLGDFK 104 (319)
T ss_dssp EECTTSCEEEEETTTCEEEEECTTTCC--------------EEEEEECSSSSEEEEEE-------CTTSCEEEEECTTSS
T ss_pred EECCCCCEEEEECCCCEEEEEECCCCe--------------EEEEEeCCCCCeeEEEE-------CCCCCEEEEecCCCc
Confidence 333444888888889999888887643 22233344556789999 8899888776432
Q ss_pred --CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCC----CcEEEeeeccCCC
Q 021036 157 --GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGS----GSFDLWKCDISCN 230 (318)
Q Consensus 157 --~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~d----g~i~vw~~~~~~~ 230 (318)
+.+...+...+.......... .....+.+.+. ++|++.++.... ..-.+|.++....
T Consensus 105 ~~~~i~~~~~~~~~~~~~~~~~~------------~~~~~nd~~~d-----~~G~l~vtd~~~~~~~~~g~v~~~~~dg~ 167 (319)
T d2dg1a1 105 STGGIFAATENGDNLQDIIEDLS------------TAYCIDDMVFD-----SKGGFYFTDFRGYSTNPLGGVYYVSPDFR 167 (319)
T ss_dssp SCCEEEEECTTSCSCEEEECSSS------------SCCCEEEEEEC-----TTSCEEEEECCCBTTBCCEEEEEECTTSC
T ss_pred cceeEEEEcCCCceeeeeccCCC------------cccCCcceeEE-----eccceeecccccccccCcceeEEEecccc
Confidence 334444544443322221111 11246778888 899877664321 1223443354443
Q ss_pred eeeEeeeeecccCceeEEEEcCCCCEE-EEecCCCcEEEEEecC
Q 021036 231 KFDKVGSYNAHDQVVTGLAWAFDGCCL-YSCSQDNFVRSWIFHG 273 (318)
Q Consensus 231 ~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~d~~v~iwd~~~ 273 (318)
.... +...-.....++|+|+++.| ++-+..+.|..|++..
T Consensus 168 ~~~~---~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~ 208 (319)
T d2dg1a1 168 TVTP---IIQNISVANGIALSTDEKVLWVTETTANRLHRIALED 208 (319)
T ss_dssp CEEE---EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred eeEE---EeeccceeeeeeeccccceEEEecccCCceEEEEEcC
Confidence 3222 22223345789999999855 5556788999999864
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.21 E-value=0.00022 Score=57.04 Aligned_cols=121 Identities=9% Similarity=0.047 Sum_probs=76.0
Q ss_pred cEEEEEeeeecCCCCCCCc-----EEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccC
Q 021036 130 WITSISLAVLSSDSSNPQV-----LLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQ 204 (318)
Q Consensus 130 ~v~~~~~~p~~~~~~~~~~-----~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 204 (318)
.-+.++| +++++ ++++-+..+.|..||+.....+....... ............+++.
T Consensus 173 ~pNGi~~-------~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~-------~~~~~~~~~pdGiavD---- 234 (314)
T d1pjxa_ 173 FPNGIAV-------RHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWG-------HIPGTHEGGADGMDFD---- 234 (314)
T ss_dssp SEEEEEE-------EECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEE-------ECCCCSSCEEEEEEEB----
T ss_pred eeeeeEE-------CCCCCcceeEEEEEeecccceEEeeccCccccceeeEEE-------EccccccccceeeEEe----
Confidence 3467888 44432 44555677889888876433222110000 0000111234578898
Q ss_pred CCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCC-EEEEecCCCcEEEEEecC
Q 021036 205 SPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGC-CLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 205 ~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~ 273 (318)
.+|+++++....+.|.+| +...++ .+..+......+++++|.|+++ ++++.+.++.|..+++..
T Consensus 235 -~~GnlyVa~~~~g~I~~~--dp~~g~--~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 235 -EDNNLLVANWGSSHIEVF--GPDGGQ--PKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp -TTCCEEEEEETTTEEEEE--CTTCBS--CSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred -cCCcEEEEEcCCCEEEEE--eCCCCE--EEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence 899988888888999999 555554 3334444556788999999987 557777888888888754
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.71 E-value=0.0064 Score=47.71 Aligned_cols=145 Identities=12% Similarity=0.062 Sum_probs=89.2
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEE
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWD 163 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd 163 (318)
+.++.+--..+.|..||.++++. ..+ .....+.++.+ ..++.++++ +.+ .+.++|
T Consensus 30 ~~l~wvDi~~~~I~r~d~~~g~~---------------~~~-~~~~~~~~i~~-------~~dg~l~va-~~~-gl~~~d 84 (295)
T d2ghsa1 30 GTAWWFNILERELHELHLASGRK---------------TVH-ALPFMGSALAK-------ISDSKQLIA-SDD-GLFLRD 84 (295)
T ss_dssp TEEEEEEGGGTEEEEEETTTTEE---------------EEE-ECSSCEEEEEE-------EETTEEEEE-ETT-EEEEEE
T ss_pred CEEEEEECCCCEEEEEECCCCeE---------------EEE-ECCCCcEEEEE-------ecCCCEEEE-EeC-ccEEee
Confidence 46666666778899999887541 222 22456788888 677766665 444 588999
Q ss_pred CCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeC----CCcEEEeeeccCCCeeeEeeeee
Q 021036 164 GYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKG----SGSFDLWKCDISCNKFDKVGSYN 239 (318)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~----dg~i~vw~~~~~~~~~~~~~~~~ 239 (318)
..+++.......... .....++.+.+. |+|.+.++... .+.-.+|. ...++...+ .
T Consensus 85 ~~tg~~~~l~~~~~~----------~~~~~~nd~~vd-----~~G~iw~~~~~~~~~~~~g~l~~--~~~g~~~~~--~- 144 (295)
T d2ghsa1 85 TATGVLTLHAELESD----------LPGNRSNDGRMH-----PSGALWIGTMGRKAETGAGSIYH--VAKGKVTKL--F- 144 (295)
T ss_dssp TTTCCEEEEECSSTT----------CTTEEEEEEEEC-----TTSCEEEEEEETTCCTTCEEEEE--EETTEEEEE--E-
T ss_pred cccceeeEEeeeecC----------CCcccceeeEEC-----CCCCEEEEeccccccccceeEee--ecCCcEEEE--e-
Confidence 988765433221110 012256788888 89987766542 23445663 334442222 2
Q ss_pred cccCceeEEEEcCCCCEE-EEecCCCcEEEEEecC
Q 021036 240 AHDQVVTGLAWAFDGCCL-YSCSQDNFVRSWIFHG 273 (318)
Q Consensus 240 ~h~~~v~~~~~~~~~~~l-~s~~~d~~v~iwd~~~ 273 (318)
..-.....++|+++++.+ ++-+..+.|..|++..
T Consensus 145 ~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~ 179 (295)
T d2ghsa1 145 ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDA 179 (295)
T ss_dssp EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCT
T ss_pred eccCCcceeeecCCCceEEEeecccceeeEeeecc
Confidence 222345789999998854 5556778899898753
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.61 E-value=0.0026 Score=49.10 Aligned_cols=63 Identities=11% Similarity=0.075 Sum_probs=38.3
Q ss_pred EeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeec
Q 021036 214 GKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSI 281 (318)
Q Consensus 214 ~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 281 (318)
...++.-.||-+++.+...+.+.. +. ......|+|||+.|+.. .++.|+++|+.+++...+..
T Consensus 208 ~~~~~~~~l~~~d~~g~~~~~lt~---~~-~~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~i~~ 270 (281)
T d1k32a2 208 TDIDGFGQIYSTDLDGKDLRKHTS---FT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEKIEI 270 (281)
T ss_dssp ECTTSSCEEEEEETTSCSCEECCC---CC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTCCEEECCC
T ss_pred cccccccceEEEeCCCCceEEeec---CC-CcccccCcCCCCEEEEE-eCCEEEEEECCCCCEEEecc
Confidence 334444445544665555333321 21 22234689999987764 46789999999888876653
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.54 E-value=0.00033 Score=54.43 Aligned_cols=97 Identities=6% Similarity=-0.070 Sum_probs=62.2
Q ss_pred CC--ceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEec----CC--CcEEEEEecCCcee
Q 021036 206 PR--LMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCS----QD--NFVRSWIFHGNSLS 277 (318)
Q Consensus 206 ~~--~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~----~d--~~v~iwd~~~~~~~ 277 (318)
|+ |+.++..+ +|.|.+. ++.+++.+ .+..+.+.+....|||||+.||... .+ ..|.+++..++...
T Consensus 8 Pdi~G~~v~f~~-~~dl~~~--d~~~g~~~---~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~ 81 (281)
T d1k32a2 8 PDIHGDRIIFVC-CDDLWEH--DLKSGSTR---KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIK 81 (281)
T ss_dssp EEEETTEEEEEE-TTEEEEE--ETTTCCEE---EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEE
T ss_pred CCCCCCEEEEEe-CCcEEEE--ECCCCCEE---EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceE
Confidence 77 87777665 4555555 66676633 3455667788899999999887543 22 23677777777776
Q ss_pred eeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 278 QVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
.+...+.. ...........+|+|||+.|+..
T Consensus 82 ~lt~~~~~--------~~~~~~~~~~~~~spdg~~l~~~ 112 (281)
T d1k32a2 82 RITYFSGK--------STGRRMFTDVAGFDPDGNLIIST 112 (281)
T ss_dssp ECCCCCEE--------EETTEECSEEEEECTTCCEEEEE
T ss_pred EeeecCCC--------ccCccccccccccCCCCCEEEEE
Confidence 65433211 01112245688999999988764
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.54 E-value=0.014 Score=47.21 Aligned_cols=69 Identities=14% Similarity=0.107 Sum_probs=43.3
Q ss_pred CCCCccEEEEecCC-CcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCC--
Q 021036 80 SSNWFSILAVGGRS-GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSD-- 156 (318)
Q Consensus 80 ~s~~~~~l~~g~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d-- 156 (318)
+..++++++.|+.+ ..+.+||..+... .....+...... ...+. ..+|++++.|+.+
T Consensus 83 ~~~~g~i~v~Gg~~~~~~~~yd~~~~~w------------~~~~~~~~~r~~-~~~~~-------~~dG~v~v~GG~~~~ 142 (387)
T d1k3ia3 83 MDGNGQIVVTGGNDAKKTSLYDSSSDSW------------IPGPDMQVARGY-QSSAT-------MSDGRVFTIGGSWSG 142 (387)
T ss_dssp ECTTSCEEEECSSSTTCEEEEEGGGTEE------------EECCCCSSCCSS-CEEEE-------CTTSCEEEECCCCCS
T ss_pred EecCCcEEEeecCCCcceeEecCccCcc------------cccccccccccc-cceee-------ecCCceeeecccccc
Confidence 34456888888765 5799999987652 122222222222 23444 5688888888753
Q ss_pred ----CcEEEEECCCcc
Q 021036 157 ----GSVRIWDGYIQE 168 (318)
Q Consensus 157 ----~~v~iwd~~~~~ 168 (318)
..+.+||..+.+
T Consensus 143 ~~~~~~v~~yd~~~~~ 158 (387)
T d1k3ia3 143 GVFEKNGEVYSPSSKT 158 (387)
T ss_dssp SSCCCCEEEEETTTTE
T ss_pred ccccceeeeecCCCCc
Confidence 368999988764
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=96.93 E-value=0.039 Score=44.51 Aligned_cols=157 Identities=10% Similarity=0.080 Sum_probs=88.2
Q ss_pred CccEEEEecCCC-----------cEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEE
Q 021036 83 WFSILAVGGRSG-----------KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLV 151 (318)
Q Consensus 83 ~~~~l~~g~~dg-----------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~ 151 (318)
++++++.|+.+. .+.+||..+++... .......+........+ ..++.+++
T Consensus 30 ~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~-----------~~~~~~~~~~~~~~~~~-------~~~g~i~v 91 (387)
T d1k3ia3 30 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSD-----------RTVTVTKHDMFCPGISM-------DGNGQIVV 91 (387)
T ss_dssp TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCC-----------CEEEECSCCCSSCEEEE-------CTTSCEEE
T ss_pred CCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEee-----------cCCCCCCcccceeEEEE-------ecCCcEEE
Confidence 357777776421 26789998876321 11111223333345567 78999999
Q ss_pred EEeCC-CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCC------CcEEEee
Q 021036 152 TGSSD-GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGS------GSFDLWK 224 (318)
Q Consensus 152 s~~~d-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~d------g~i~vw~ 224 (318)
.|+.+ ..+.+||..+..-...-.... ...-...+.. ++|++++.|+.+ ..+.+|
T Consensus 92 ~Gg~~~~~~~~yd~~~~~w~~~~~~~~-------------~r~~~~~~~~-----~dG~v~v~GG~~~~~~~~~~v~~y- 152 (387)
T d1k3ia3 92 TGGNDAKKTSLYDSSSDSWIPGPDMQV-------------ARGYQSSATM-----SDGRVFTIGGSWSGGVFEKNGEVY- 152 (387)
T ss_dssp ECSSSTTCEEEEEGGGTEEEECCCCSS-------------CCSSCEEEEC-----TTSCEEEECCCCCSSSCCCCEEEE-
T ss_pred eecCCCcceeEecCccCcccccccccc-------------cccccceeee-----cCCceeeeccccccccccceeeee-
Confidence 88765 689999988765432211111 0112244554 789999998743 357788
Q ss_pred eccCCCeeeEeeeeecc-------cC-----ceeEEEEcCCCCEEEEecCCCcEEEEEecCCcee
Q 021036 225 CDISCNKFDKVGSYNAH-------DQ-----VVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLS 277 (318)
Q Consensus 225 ~~~~~~~~~~~~~~~~h-------~~-----~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 277 (318)
|..+.++..+...... .. .-..+.--++|+.+..++.++.+.+++..+....
T Consensus 153 -d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~ 216 (387)
T d1k3ia3 153 -SPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVK 216 (387)
T ss_dssp -ETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEE
T ss_pred -cCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEe
Confidence 6667776554322110 00 0011222346777777777777777776665443
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=96.67 E-value=0.094 Score=41.69 Aligned_cols=72 Identities=11% Similarity=0.023 Sum_probs=45.4
Q ss_pred ceeEEEEeeccCCCCceEEEEEeC---------------CCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEE
Q 021036 193 PISVLSLILPVQSPRLMLLAVGKG---------------SGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCL 257 (318)
Q Consensus 193 ~v~~l~~~~~~~~~~~~~l~~~~~---------------dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 257 (318)
..+++.+. .++.+++|-.. -+...+|.++....+ .+ ...-.....++++|++++|
T Consensus 151 ~pNDv~~~-----~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~--~~---~~~l~~pNGI~~s~d~~~l 220 (340)
T d1v04a_ 151 SVNDIVAV-----GPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVR--VV---AEGFDFANGINISPDGKYV 220 (340)
T ss_dssp SEEEEEEE-----ETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEE--EE---EEEESSEEEEEECTTSSEE
T ss_pred CccceEEe-----cCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceE--EE---cCCCCccceeEECCCCCEE
Confidence 56788888 78887777321 123455544543321 22 1223456889999999865
Q ss_pred E-EecCCCcEEEEEecCC
Q 021036 258 Y-SCSQDNFVRSWIFHGN 274 (318)
Q Consensus 258 ~-s~~~d~~v~iwd~~~~ 274 (318)
+ +-+..+.|+.|++...
T Consensus 221 yVa~t~~~~i~~y~~~~~ 238 (340)
T d1v04a_ 221 YIAELLAHKIHVYEKHAN 238 (340)
T ss_dssp EEEEGGGTEEEEEEECTT
T ss_pred EEEeCCCCeEEEEEeCCC
Confidence 4 5567788999999754
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.53 E-value=0.1 Score=39.70 Aligned_cols=153 Identities=7% Similarity=-0.084 Sum_probs=85.9
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCC-CCcEEEEEeCCCcEEEEE
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSN-PQVLLVTGSSDGSVRIWD 163 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~-~~~~l~s~~~d~~v~iwd 163 (318)
.++.+-..++.|+..+++... ....+......+.++++ .. .+.+..+-...+.|.+.+
T Consensus 49 ~iywsd~~~~~I~~~~l~g~~--------------~~~v~~~~~~~p~~iAv-------D~~~~~lY~~d~~~~~I~~~~ 107 (263)
T d1npea_ 49 VVYWTDISEPSIGRASLHGGE--------------PTTIIRQDLGSPEGIAL-------DHLGRTIFWTDSQLDRIEVAK 107 (263)
T ss_dssp EEEEEETTTTEEEEEESSSCC--------------CEEEECTTCCCEEEEEE-------ETTTTEEEEEETTTTEEEEEE
T ss_pred EEEEEECCCCeEEEEEcccCC--------------cEEEEEeccccccEEEE-------eccCCeEEEeccCCCEEEEEe
Confidence 344444567778888887543 11122222345778888 43 444445555678999999
Q ss_pred CCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCC-ceEEEEEeCCCcEEEeeeccCCCeeeEeeeeeccc
Q 021036 164 GYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPR-LMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHD 242 (318)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~ 242 (318)
+........+... ...+..++++ |. |.++.+-...+..++|..++.......+ ....-
T Consensus 108 ~dg~~~~~l~~~~--------------l~~p~~l~vd-----p~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i--~~~~~ 166 (263)
T d1npea_ 108 MDGTQRRVLFDTG--------------LVNPRGIVTD-----PVRGNLYWTDWNRDNPKIETSHMDGTNRRIL--AQDNL 166 (263)
T ss_dssp TTSCSCEEEECSS--------------CSSEEEEEEE-----TTTTEEEEEECCSSSCEEEEEETTSCCCEEE--ECTTC
T ss_pred cCCceEEEEeccc--------------ccCCcEEEEe-----cccCcEEEeecCCCCcEEEEecCCCCCceee--eeecc
Confidence 8755432222111 1256788898 54 4455454333344565445544332222 12223
Q ss_pred CceeEEEEcCCCCEEEEe-cCCCcEEEEEecCCceeee
Q 021036 243 QVVTGLAWAFDGCCLYSC-SQDNFVRSWIFHGNSLSQV 279 (318)
Q Consensus 243 ~~v~~~~~~~~~~~l~s~-~~d~~v~iwd~~~~~~~~~ 279 (318)
....++++++.+..|..+ ...+.|...++.+.....+
T Consensus 167 ~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v 204 (263)
T d1npea_ 167 GLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKV 204 (263)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEE
T ss_pred cccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEE
Confidence 456789999887766544 5667898888876554433
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=95.84 E-value=0.33 Score=39.37 Aligned_cols=217 Identities=11% Similarity=-0.093 Sum_probs=113.9
Q ss_pred ccceEEeeCCCceeEeecCCCCCCCceecch------hccccccccce----------eeeeccccc-CCC--Ccccccc
Q 021036 17 THPTVAASKSKGNSITKIPSNCCLPLITADQ------YASRSAMLHSL----------AVAWSPVLR-LSS--KKYPVPQ 77 (318)
Q Consensus 17 ~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~~----------~~~w~p~~~-~~~--~~~~v~~ 77 (318)
..-+.+|+.+|.++++=+++++.+..|..-. ++..+....++ .+.|.-... ..+ |=-.+.-
T Consensus 13 yy~f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~ 92 (459)
T d1fwxa2 13 YYGFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSF 92 (459)
T ss_dssp EEEEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEE
T ss_pred EEEEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccc
Confidence 3456889999999999999988776654321 11111100000 011110000 001 1112222
Q ss_pred cCCCCCccEEEEec-CCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCC
Q 021036 78 NGSSNWFSILAVGG-RSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSD 156 (318)
Q Consensus 78 ~~~s~~~~~l~~g~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d 156 (318)
..-..||++|++.. .+.+|-+.|+++.++. .+..+. -...+..++..+ .++..+++..+.+
T Consensus 93 TdGtyDGrylFVNDkan~RVAvIdl~~fkt~------------kIi~iP-n~~~~HG~r~~~-----~p~T~YV~~~~e~ 154 (459)
T d1fwxa2 93 TEGKYDGRFLFMNDKANTRVARVRCDVMKCD------------AILEIP-NAKGIHGLRPQK-----WPRSNYVFCNGED 154 (459)
T ss_dssp ETTEEEEEEEEEEETTTTEEEEEETTTTEEE------------EEEECS-SCCSEEEEEECC-----SSBCSEEEEEECS
T ss_pred cCCccceeEEEEEcCCCceEEEEECcceeee------------EEEecC-CCCCCceeeccc-----CCCeEEEEccCcc
Confidence 23334688887765 6788999999886532 122222 233455555411 2344566666553
Q ss_pred C------------------cEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCC
Q 021036 157 G------------------SVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSG 218 (318)
Q Consensus 157 ~------------------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg 218 (318)
. .+.+.|..+++....+.... ....+.++ ++|+++++.+.+.
T Consensus 155 ~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V~g---------------~ld~~~~s-----~dGK~af~TsyNS 214 (459)
T d1fwxa2 155 ETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG---------------NLDNCDAD-----YEGKWAFSTSYNS 214 (459)
T ss_dssp CEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEESS---------------CCCCEEEC-----SSSSEEEEEESCT
T ss_pred ccccCCCCccccchhhcceEEEEEecCCceEEEEeeeCC---------------ChhccccC-----CCCCEEEEEeccc
Confidence 2 25567777766655443322 34567787 8898888876432
Q ss_pred ---------------cEEEeee---------------------ccCCCee-eEeeeeecccCceeEEEEcCCCCEEE-Ee
Q 021036 219 ---------------SFDLWKC---------------------DISCNKF-DKVGSYNAHDQVVTGLAWAFDGCCLY-SC 260 (318)
Q Consensus 219 ---------------~i~vw~~---------------------~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~-s~ 260 (318)
.+.++++ +.+...- ..+..+.. ......+..+|||++++ ++
T Consensus 215 E~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPV-pKsPHGV~vSPDGKyi~VaG 293 (459)
T d1fwxa2 215 EKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAG 293 (459)
T ss_dssp TCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEE-ESSCCCEEECTTSSEEEEEC
T ss_pred cCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEec-CCCCCceEECCCCCEEEEeC
Confidence 1333432 1111100 01111111 12346789999999765 55
Q ss_pred cCCCcEEEEEec
Q 021036 261 SQDNFVRSWIFH 272 (318)
Q Consensus 261 ~~d~~v~iwd~~ 272 (318)
..+.++.++|++
T Consensus 294 KLs~tVSViD~~ 305 (459)
T d1fwxa2 294 KLSPTVTVLDVT 305 (459)
T ss_dssp TTSSBEEEEEGG
T ss_pred CcCCcEEEEEeh
Confidence 678999999996
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.68 E-value=0.31 Score=37.48 Aligned_cols=103 Identities=15% Similarity=0.165 Sum_probs=59.8
Q ss_pred ccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcE
Q 021036 17 THPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKV 96 (318)
Q Consensus 17 ~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i 96 (318)
...+++--...++.++|+++.+.+...... ..+ .-..|-... .|+.-+ +..|
T Consensus 73 ~~~IiALrag~~LQiFnletK~klks~~~~-----e~V---vfWkWis~~-------------------~L~lVT-~taV 124 (327)
T d1utca2 73 ASKVIALKAGKTLQIFNIEMKSKMKAHTMT-----DDV---TFWKWISLN-------------------TVALVT-DNAV 124 (327)
T ss_dssp SSSEEEEEETTEEEEEETTTTEEEEEEECS-----SCC---CEEEESSSS-------------------EEEEEC-SSEE
T ss_pred CCcEEEEecCCeEEEEehhHhhhhceEEcC-----CCc---EEEEecCCC-------------------EEEEEc-CCce
Confidence 334555445778999999998876666542 222 226775544 444443 3579
Q ss_pred EEEEccCCccccccccccCCceeEEeeecccc----ccEEEEEeeeecCCCCCCCcEEEEEe-------CCCcEEEEECC
Q 021036 97 SLWRICVPKCYSVEDCKVPTTAVLIGLFQAHN----SWITSISLAVLSSDSSNPQVLLVTGS-------SDGSVRIWDGY 165 (318)
Q Consensus 97 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~----~~v~~~~~~p~~~~~~~~~~~l~s~~-------~d~~v~iwd~~ 165 (318)
+-|+++... .+.+.+..|. ..|-.-.. +++.++++..+ -.|.+.+|..+
T Consensus 125 YHW~~~g~s-------------~P~k~fdR~~~L~~~QIInY~~-------d~~~kW~~l~GI~~~~~~i~G~mQLYS~e 184 (327)
T d1utca2 125 YHWSMEGES-------------QPVKMFDRHSSLAGCQIINYRT-------DAKQKWLLLTGISAQQNRVVGAMQLYSVD 184 (327)
T ss_dssp EEEESSSSC-------------CCEEEEECCGGGTTCEEEEEEE-------CTTSCEEEEEEEEEETTEEEEEEEEEETT
T ss_pred EEEcccCCC-------------CchhhhhhcccccCceEEEEEE-------CCCCCEEEEEeEecCCCceeEEEEEEEec
Confidence 999996432 2344444443 23444444 56677666543 23567788877
Q ss_pred Cc
Q 021036 166 IQ 167 (318)
Q Consensus 166 ~~ 167 (318)
.+
T Consensus 185 r~ 186 (327)
T d1utca2 185 RK 186 (327)
T ss_dssp TT
T ss_pred cC
Confidence 54
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.56 E-value=0.32 Score=36.86 Aligned_cols=120 Identities=10% Similarity=-0.019 Sum_probs=68.1
Q ss_pred ccEEEEEeeeecCCCCC-CCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCC
Q 021036 129 SWITSISLAVLSSDSSN-PQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPR 207 (318)
Q Consensus 129 ~~v~~~~~~p~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~ 207 (318)
..+.++++ .. .+.+..+-...++|.+.++............ ......++++ |..
T Consensus 77 ~~p~glAv-------D~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~--------------~~~P~~l~vd----~~~ 131 (266)
T d1ijqa1 77 QAPDGLAV-------DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREN--------------GSKPRAIVVD----PVH 131 (266)
T ss_dssp SCCCEEEE-------ETTTTEEEEEETTTTEEEEEETTSSSEEEEEECT--------------TCCEEEEEEE----TTT
T ss_pred CCcceEEE-------eeccceEEEEecCCCEEEeEecCCceEEEEEcCC--------------CCCcceEEEE----ccc
Confidence 34556777 33 4445555556688999998765433322211 1246788888 234
Q ss_pred ceEEEEEe-CCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEe-cCCCcEEEEEecCCcee
Q 021036 208 LMLLAVGK-GSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSC-SQDNFVRSWIFHGNSLS 277 (318)
Q Consensus 208 ~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~d~~v~iwd~~~~~~~ 277 (318)
|.++.+.. ..+.|... ++.....+.+ ....-....++++++.+..|..+ ...+.|...++.+....
T Consensus 132 g~ly~~~~~~~~~I~r~--~~dGs~~~~l--~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~ 199 (266)
T d1ijqa1 132 GFMYWTDWGTPAKIKKG--GLNGVDIYSL--VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK 199 (266)
T ss_dssp TEEEEEECSSSCEEEEE--ETTSCCEEEE--ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CeEEEeccCCCcceeEe--ccCCCceecc--cccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEE
Confidence 55555532 23445544 4444332222 12223456889999987766554 56678888888765443
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=94.36 E-value=1 Score=36.47 Aligned_cols=73 Identities=15% Similarity=-0.007 Sum_probs=46.3
Q ss_pred eeEEEEeeccCCCCceEEEEEe-CCCcEEEeeeccC------CCeee--EeeeeecccCceeEEEEcCCCCEEEEecCCC
Q 021036 194 ISVLSLILPVQSPRLMLLAVGK-GSGSFDLWKCDIS------CNKFD--KVGSYNAHDQVVTGLAWAFDGCCLYSCSQDN 264 (318)
Q Consensus 194 v~~l~~~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~------~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~ 264 (318)
...+.++ |||+++++++ -+.++.++|+..- ...++ .+.+.+ ..-....-+|+..|.-..|---|.
T Consensus 277 PHGV~vS-----PDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~e-lglgPLht~fd~~g~aytslfids 350 (459)
T d1fwxa2 277 PHGCNMA-----PDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDGRGNAYTSLFLDS 350 (459)
T ss_dssp CCCEEEC-----TTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCB-CCSCEEEEEECTTSEEEEEETTTT
T ss_pred CCceEEC-----CCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecc-cCcCccccccCCCceEEEEeeccc
Confidence 4567888 9999887776 6889999965310 00000 111111 122334567888886666667899
Q ss_pred cEEEEEec
Q 021036 265 FVRSWIFH 272 (318)
Q Consensus 265 ~v~iwd~~ 272 (318)
.|.-|++.
T Consensus 351 ~v~kw~~~ 358 (459)
T d1fwxa2 351 QVVKWNIE 358 (459)
T ss_dssp EEEEEEHH
T ss_pred eEEEEecc
Confidence 99999985
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=93.04 E-value=1.3 Score=37.48 Aligned_cols=80 Identities=14% Similarity=0.177 Sum_probs=45.8
Q ss_pred CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEee
Q 021036 157 GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVG 236 (318)
Q Consensus 157 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 236 (318)
|.+.-+|+.+++.+....... +...-.+. -.+.+++.|+.||.++.| |.++++ .+.
T Consensus 438 G~l~A~D~~tGk~~W~~~~~~---------------~~~gg~l~-----TagglVF~G~~dg~l~A~--Da~tGe--~LW 493 (560)
T d1kv9a2 438 GALLAWDPVKQKAAWKVPYPT---------------HWNGGTLS-----TAGNLVFQGTAAGQMHAY--SADKGE--ALW 493 (560)
T ss_dssp EEEEEEETTTTEEEEEEEESS---------------SCCCCEEE-----ETTTEEEEECTTSEEEEE--ETTTCC--EEE
T ss_pred cceEEEeCCCCeEeeeccCCC---------------CCCCceeE-----ECCCEEEEECCCCcEEEE--ECCCCc--EeE
Confidence 456777777777666543221 11111122 245677789999999999 777887 565
Q ss_pred eeecccC-ceeEEEEcCCCC-EEEEe
Q 021036 237 SYNAHDQ-VVTGLAWAFDGC-CLYSC 260 (318)
Q Consensus 237 ~~~~h~~-~v~~~~~~~~~~-~l~s~ 260 (318)
++.-... .-.-+.|..+|+ ||+..
T Consensus 494 ~~~l~~~~~~~P~ty~~dGkqyv~v~ 519 (560)
T d1kv9a2 494 QFEAQSGIVAAPMTFELAGRQYVAIM 519 (560)
T ss_dssp EEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred EEECCCCccccCEEEEECCEEEEEEE
Confidence 5543211 111245666776 55443
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=93.03 E-value=1.7 Score=36.75 Aligned_cols=49 Identities=12% Similarity=0.130 Sum_probs=31.1
Q ss_pred CceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCc-eeEEEEcCCCC-EEEE
Q 021036 207 RLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQV-VTGLAWAFDGC-CLYS 259 (318)
Q Consensus 207 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~-~l~s 259 (318)
.+.++++|+.||.++.| |.++++ .+.++.-.... -.-+.|..+|+ |++.
T Consensus 487 agglVF~G~~dg~l~A~--Da~TGe--~LW~~~~~~~~~~~P~ty~~~GkQYv~v 537 (573)
T d1kb0a2 487 AGNVVFQGTADGRLVAY--HAATGE--KLWEAPTGTGVVAAPSTYMVDGRQYVSV 537 (573)
T ss_dssp TTTEEEEECTTSEEEEE--ETTTCC--EEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred cCCEEEEECCCCeEEEE--ECCCCc--EeEEEECCCCccccCEEEEECCEEEEEE
Confidence 46678889999999999 788887 66665422111 01145556776 4443
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=93.01 E-value=1.9 Score=35.23 Aligned_cols=35 Identities=6% Similarity=0.015 Sum_probs=28.1
Q ss_pred ccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCccee
Q 021036 129 SWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQ 170 (318)
Q Consensus 129 ~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 170 (318)
..-++|+| .+++++|++--..|.|++++..+++..
T Consensus 27 ~~P~~la~-------~pdg~llVter~~G~i~~v~~~~g~~~ 61 (450)
T d1crua_ 27 NKPHALLW-------GPDNQIWLTERATGKILRVNPESGSVK 61 (450)
T ss_dssp SSEEEEEE-------CTTSCEEEEETTTCEEEEECTTTCCEE
T ss_pred CCceEEEE-------eCCCeEEEEEecCCEEEEEECCCCcEe
Confidence 45679999 899998888766899999988776543
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=92.34 E-value=1.5 Score=37.18 Aligned_cols=50 Identities=14% Similarity=0.155 Sum_probs=31.5
Q ss_pred CceEEEEEeCCCcEEEeeeccCCCeeeEeeeeeccc-CceeEEEEcCCCC-EEEEe
Q 021036 207 RLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHD-QVVTGLAWAFDGC-CLYSC 260 (318)
Q Consensus 207 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~-~l~s~ 260 (318)
.+.++++|+.||.++-+ |.++++ .+.++.-.. ..-.-+.|..+|+ |+++.
T Consensus 474 agglVf~G~~dg~l~A~--Da~tGe--~lW~~~l~~~~~a~P~ty~~dGkqYi~v~ 525 (571)
T d2ad6a1 474 KGGLVWYATLDGYLKAL--DNKDGK--ELWNFKMPSGGIGSPMTYSFKGKQYIGSM 525 (571)
T ss_dssp TTTEEEEECTTSEEEEE--ETTTCC--EEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred cCCEEEEECCCCeEEEE--ECCCCc--EEEEEECCCCceecceEEEECCEEEEEEE
Confidence 35577789999999998 788887 565554211 1112255666776 55443
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=92.24 E-value=2 Score=33.60 Aligned_cols=96 Identities=11% Similarity=0.022 Sum_probs=55.7
Q ss_pred CCce-EEEEEe---CCCcEEEeeeccCCCeeeEeeeeecc-cCceeEEEEcCCCCEEEEec--C-------------CCc
Q 021036 206 PRLM-LLAVGK---GSGSFDLWKCDISCNKFDKVGSYNAH-DQVVTGLAWAFDGCCLYSCS--Q-------------DNF 265 (318)
Q Consensus 206 ~~~~-~l~~~~---~dg~i~vw~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~~--~-------------d~~ 265 (318)
++|. +|++.. ...+|.+|+++....+...+.++... ......++...++.+++|-. . -+.
T Consensus 108 ~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~ 187 (340)
T d1v04a_ 108 DDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAW 187 (340)
T ss_dssp TTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCC
T ss_pred CCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCc
Confidence 3444 344443 45679999877666554444444322 23467888888888888731 1 123
Q ss_pred EEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 266 VRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 266 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
..+|....+........- ...++++++||+++|..+
T Consensus 188 g~v~~~~~~~~~~~~~~l---------------~~pNGI~~s~d~~~lyVa 223 (340)
T d1v04a_ 188 SFVTYYSPNDVRVVAEGF---------------DFANGINISPDGKYVYIA 223 (340)
T ss_dssp EEEEEECSSCEEEEEEEE---------------SSEEEEEECTTSSEEEEE
T ss_pred eeEEEEcCCceEEEcCCC---------------CccceeEECCCCCEEEEE
Confidence 344444444333222111 245899999999888765
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.14 E-value=1.2 Score=36.11 Aligned_cols=96 Identities=8% Similarity=-0.041 Sum_probs=52.7
Q ss_pred CCCCcEEEEE-eCC----CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCC-
Q 021036 144 SNPQVLLVTG-SSD----GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGS- 217 (318)
Q Consensus 144 ~~~~~~l~s~-~~d----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~d- 217 (318)
+|++++++.+ +.+ -.++++|+.+++.+..... ......++|. +++..|+-...+
T Consensus 133 Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~---------------~~~~~~~~W~-----~D~~~~~Y~~~~~ 192 (430)
T d1qfma1 133 SEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE---------------RVKFSCMAWT-----HDGKGMFYNAYPQ 192 (430)
T ss_dssp CTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE---------------EECSCCEEEC-----TTSSEEEEEECCC
T ss_pred cCCCCEEEEEeccccCchheeEEeccCcceecccccc---------------cccccceEEc-----CCCCEEEEEEecc
Confidence 7888887754 223 3799999999876542111 0122467888 888766544322
Q ss_pred ---------------CcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEE
Q 021036 218 ---------------GSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYS 259 (318)
Q Consensus 218 ---------------g~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 259 (318)
..|..+.+......-..+.........+..+..+.++++++.
T Consensus 193 ~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i 249 (430)
T d1qfma1 193 QDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLL 249 (430)
T ss_dssp CSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEE
T ss_pred ccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeE
Confidence 235555332222221122222222334566778899997653
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.22 E-value=2.2 Score=31.93 Aligned_cols=153 Identities=12% Similarity=-0.063 Sum_probs=80.6
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEE-EEeCCCcEEEE-
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLV-TGSSDGSVRIW- 162 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~-s~~~d~~v~iw- 162 (318)
++..+-...+.|.+.++....+ + ..+.........++. .|...+|. +-...+..+|+
T Consensus 92 ~lY~~d~~~~~I~~~~~dg~~~------------~--~l~~~~l~~p~~l~v-------dp~~g~ly~t~~~~~~~~I~r 150 (263)
T d1npea_ 92 TIFWTDSQLDRIEVAKMDGTQR------------R--VLFDTGLVNPRGIVT-------DPVRGNLYWTDWNRDNPKIET 150 (263)
T ss_dssp EEEEEETTTTEEEEEETTSCSC------------E--EEECSSCSSEEEEEE-------ETTTTEEEEEECCSSSCEEEE
T ss_pred eEEEeccCCCEEEEEecCCceE------------E--EEecccccCCcEEEE-------ecccCcEEEeecCCCCcEEEE
Confidence 4555666778899998875431 1 112222356788888 44444444 43322333344
Q ss_pred -ECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEE-EEEeCCCcEEEeeeccCCCeeeEeeeeec
Q 021036 163 -DGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLL-AVGKGSGSFDLWKCDISCNKFDKVGSYNA 240 (318)
Q Consensus 163 -d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 240 (318)
++...... .+... .-.....|+++ +.++.| .+-...+.|...+ ......+.+ +.+
T Consensus 151 ~~~dG~~~~-~i~~~-------------~~~~P~glaiD-----~~~~~lYw~d~~~~~I~~~~--~~g~~~~~v--~~~ 207 (263)
T d1npea_ 151 SHMDGTNRR-ILAQD-------------NLGLPNGLTFD-----AFSSQLCWVDAGTHRAECLN--PAQPGRRKV--LEG 207 (263)
T ss_dssp EETTSCCCE-EEECT-------------TCSCEEEEEEE-----TTTTEEEEEETTTTEEEEEE--TTEEEEEEE--EEC
T ss_pred ecCCCCCce-eeeee-------------cccccceEEEe-----ecCcEEEEEeCCCCEEEEEE--CCCCCeEEE--ECC
Confidence 44432222 11111 11245688998 555555 4445677787774 444332222 222
Q ss_pred ccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCC
Q 021036 241 HDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPT 283 (318)
Q Consensus 241 h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 283 (318)
-. ...+|++. .+.+..+-...+.|...|..+++........
T Consensus 208 ~~-~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~ 248 (263)
T d1npea_ 208 LQ-YPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPH 248 (263)
T ss_dssp CC-SEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCS
T ss_pred CC-CcEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEECCC
Confidence 22 23577775 3434455556788999998877766554433
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.16 E-value=2.4 Score=32.39 Aligned_cols=108 Identities=8% Similarity=0.084 Sum_probs=69.8
Q ss_pred CCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEe
Q 021036 144 SNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLW 223 (318)
Q Consensus 144 ~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw 223 (318)
+|..+.|+.-+ ..++.++|+++.+.++.+...+ +|.-=.|- +.+.|+..+ +..|+-|
T Consensus 71 hP~~~IiALra-g~~LQiFnletK~klks~~~~e---------------~VvfWkWi------s~~~L~lVT-~taVYHW 127 (327)
T d1utca2 71 NPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---------------DVTFWKWI------SLNTVALVT-DNAVYHW 127 (327)
T ss_dssp CSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS---------------CCCEEEES------SSSEEEEEC-SSEEEEE
T ss_pred CCCCcEEEEec-CCeEEEEehhHhhhhceEEcCC---------------CcEEEEec------CCCEEEEEc-CCceEEE
Confidence 45666676665 5689999999998888766554 44444453 445555555 5679999
Q ss_pred eeccCCCeeeEeeeeeccc----CceeEEEEcCCCCEEEEec-------CCCcEEEEEecCCcee
Q 021036 224 KCDISCNKFDKVGSYNAHD----QVVTGLAWAFDGCCLYSCS-------QDNFVRSWIFHGNSLS 277 (318)
Q Consensus 224 ~~~~~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~l~s~~-------~d~~v~iwd~~~~~~~ 277 (318)
+++... .+...+..|. ..|..-..++++++++..+ -.|.+.+|....+...
T Consensus 128 ~~~g~s---~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ 189 (327)
T d1utca2 128 SMEGES---QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ 189 (327)
T ss_dssp ESSSSC---CCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEE
T ss_pred cccCCC---CchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCc
Confidence 654322 2555555543 4677778888999776433 2377888887654433
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=90.52 E-value=3.2 Score=32.60 Aligned_cols=105 Identities=9% Similarity=0.044 Sum_probs=62.2
Q ss_pred EEEEEeCCCcEEEEECCC---cce----eeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEE
Q 021036 149 LLVTGSSDGSVRIWDGYI---QEL----QKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFD 221 (318)
Q Consensus 149 ~l~s~~~d~~v~iwd~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~ 221 (318)
++++...+|.+..|.+.. +.. +..+. -...+..+.++ .....|+.+-.+.-|.
T Consensus 145 ~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~---------------~~~q~EGCVvD-----de~~~LyisEE~~Giw 204 (353)
T d1h6la_ 145 YAMVTGKEGEFEQYELNADKNGYISGKKVRAFK---------------MNSQTEGMAAD-----DEYGSLYIAEEDEAIW 204 (353)
T ss_dssp EEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE---------------CSSCEEEEEEE-----TTTTEEEEEETTTEEE
T ss_pred EEEEEcCCceEEEEEEEcCCCCceeeEeeeccC---------------CCCccceEEEe-----CCCCcEEEecCccceE
Confidence 566677789998887642 221 11221 12367788898 7778888887776665
Q ss_pred EeeeccCCCeee-Eeeeeec--ccCceeEEEEc--CCCC--EEEEecCCCcEEEEEecC
Q 021036 222 LWKCDISCNKFD-KVGSYNA--HDQVVTGLAWA--FDGC--CLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 222 vw~~~~~~~~~~-~~~~~~~--h~~~v~~~~~~--~~~~--~l~s~~~d~~v~iwd~~~ 273 (318)
.++.+....... .+....+ ..+.+..|+.- .++. +|+|.-.+.+..+||..+
T Consensus 205 ~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~ 263 (353)
T d1h6la_ 205 KFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQG 263 (353)
T ss_dssp EEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred EEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCC
Confidence 554443332211 2222212 34677777653 2333 556666778999999876
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.48 E-value=4.4 Score=34.21 Aligned_cols=79 Identities=24% Similarity=0.337 Sum_probs=47.3
Q ss_pred CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEee
Q 021036 157 GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVG 236 (318)
Q Consensus 157 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 236 (318)
|.|.-+|+.+++......... ++..-.++ -.+.++++|+.||.++.| |.++++ .+.
T Consensus 466 G~l~AiD~~TG~i~W~~~~~~---------------p~~~g~ls-----tagglVF~Gt~dg~l~A~--Da~TGe--~LW 521 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEHL---------------PLWAGVLA-----TAGNLVFTGTGDGYFKAF--DAKSGK--ELW 521 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESS---------------CCCSCCEE-----ETTTEEEEECTTSEEEEE--ETTTCC--EEE
T ss_pred CeEEEEcCCCCcEEeecCCCC---------------CCccceeE-----EcCCeEEEeCCCCeEEEE--ECCCCc--EeE
Confidence 567777777777776654322 11111122 345677789999999999 788888 666
Q ss_pred eeecccC-ceeEEEEcCCCC-EEEE
Q 021036 237 SYNAHDQ-VVTGLAWAFDGC-CLYS 259 (318)
Q Consensus 237 ~~~~h~~-~v~~~~~~~~~~-~l~s 259 (318)
+++-... .-.-+.|..+|+ |++.
T Consensus 522 ~~~~~~~~~~~P~ty~~~G~qYv~i 546 (582)
T d1flga_ 522 KFQTGSGIVSPPITWEQDGEQYLGV 546 (582)
T ss_dssp EEECSSCCCSCCEEEEETTEEEEEE
T ss_pred EEECCCCccccCEEEEECCEEEEEE
Confidence 6553211 112256777886 5543
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=88.88 E-value=4.3 Score=31.80 Aligned_cols=161 Identities=12% Similarity=0.122 Sum_probs=86.6
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEe-CC---CcE
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS-SD---GSV 159 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~-~d---~~v 159 (318)
..+++...+++-|.+||++ | +.++.+. .+.++-+..-.-..- .....-|+.++ ++ .+|
T Consensus 40 ~SlI~gTdK~~Gl~vYdL~-G--------------~~l~~~~--~Gr~NNVDvr~~~~l-~~~~~di~vasnR~~~~~~l 101 (353)
T d1h6la_ 40 NSKLITTNKKSGLAVYSLE-G--------------KMLHSYH--TGKLNNVDIRYDFPL-NGKKVDIAAASNRSEGKNTI 101 (353)
T ss_dssp GCEEEEEETTSCCEEEETT-C--------------CEEEECC--SSCEEEEEEEEEEEE-TTEEEEEEEEEECCTTTCEE
T ss_pred ccEEEEEcCcCCEEEEcCC-C--------------cEEEecc--cCCcCcccccccccc-CCcceEEEEEeCCcCcceeE
Confidence 3677777777779999996 3 3334332 245555544100000 12222344444 22 367
Q ss_pred EEEECCC-cceeeeecccccccccceeeeeecccceeEEEEeeccCCCCce-EEEEEeCCCcEEEeeeccCC-C--eeeE
Q 021036 160 RIWDGYI-QELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLM-LLAVGKGSGSFDLWKCDISC-N--KFDK 234 (318)
Q Consensus 160 ~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~-~l~~~~~dg~i~vw~~~~~~-~--~~~~ 234 (318)
.+|.+.. ...+..+.....+. ......++.+|+... +.++. ++++...+|.+..|.+.... + ..+.
T Consensus 102 ~~~~id~~~~~l~~~~~~~~p~-------~~~~~~vYGlc~y~~--~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~l 172 (353)
T d1h6la_ 102 EIYAIDGKNGTLQSITDPNRPI-------ASAIDEVYGFSLYHS--QKTGKYYAMVTGKEGEFEQYELNADKNGYISGKK 172 (353)
T ss_dssp EEEEEETTTTEEEECSCSSSCE-------ECSSSSCCCEEEEEC--TTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEE
T ss_pred EEEEecCccccccccccccccc-------ccccCcceEEEEEec--CCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEe
Confidence 7887753 22222222111110 011124667776310 12344 56677789999998664332 2 2345
Q ss_pred eeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEec
Q 021036 235 VGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFH 272 (318)
Q Consensus 235 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 272 (318)
+.++. -...+..+.+++....|+.+-++.-|..++..
T Consensus 173 vr~f~-~~~q~EGCVvDde~~~LyisEE~~Giw~~~a~ 209 (353)
T d1h6la_ 173 VRAFK-MNSQTEGMAADDEYGSLYIAEEDEAIWKFSAE 209 (353)
T ss_dssp EEEEE-CSSCEEEEEEETTTTEEEEEETTTEEEEEESS
T ss_pred eeccC-CCCccceEEEeCCCCcEEEecCccceEEEEec
Confidence 55554 34568899999988888888887766555543
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=88.88 E-value=5.5 Score=33.73 Aligned_cols=49 Identities=10% Similarity=0.090 Sum_probs=31.3
Q ss_pred CceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccC-ceeEEEEcCCCC-EEEE
Q 021036 207 RLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQ-VVTGLAWAFDGC-CLYS 259 (318)
Q Consensus 207 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~-~l~s 259 (318)
.+.+++.|+.||.++.| |.++++ .+.++.-... .-.-+.|..+|+ |++.
T Consensus 483 agglVF~G~~Dg~l~A~--Da~TGe--~LW~~~~~~~~~a~P~tY~~dGkQYvav 533 (596)
T d1w6sa_ 483 AGDLVFYGTLDGYLKAR--DSDTGD--LLWKFKIPSGAIGYPMTYTHKGTQYVAI 533 (596)
T ss_dssp TTTEEEEECTTSEEEEE--ETTTCC--EEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred cCCEEEEECCCCeEEEE--ECCCCc--EeeEEECCCCcccCCeEEEECCEEEEEE
Confidence 46677789999999999 788887 6666542211 111245556776 4543
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.42 E-value=5.6 Score=31.46 Aligned_cols=99 Identities=5% Similarity=-0.001 Sum_probs=54.6
Q ss_pred cEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCce
Q 021036 130 WITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLM 209 (318)
Q Consensus 130 ~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~ 209 (318)
.|..++| +.+ .|+.. .++.+..++...-......... ..++..+.++ | .
T Consensus 88 ~v~~vaf-------s~d--~l~v~-~~~~l~~~~~~~l~~~~~~~~~--------------~~~~~~~~~~-----p--~ 136 (381)
T d1xipa_ 88 DVIFVCF-------HGD--QVLVS-TRNALYSLDLEELSEFRTVTSF--------------EKPVFQLKNV-----N--N 136 (381)
T ss_dssp TEEEEEE-------ETT--EEEEE-ESSEEEEEESSSTTCEEEEEEC--------------SSCEEEEEEC-----S--S
T ss_pred CeEEEEe-------eCC--EEEEE-eCCCEEEEEeeccccccccccc--------------cccccceecC-----C--c
Confidence 5888888 433 34444 4556777777654322221111 1255566665 4 3
Q ss_pred EEEEEeCCCcEEEeeeccCCCeeeEeee---eecccCceeEEEEcCCCCEEEEec
Q 021036 210 LLAVGKGSGSFDLWKCDISCNKFDKVGS---YNAHDQVVTGLAWAFDGCCLYSCS 261 (318)
Q Consensus 210 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~l~s~~ 261 (318)
.++....+|.+.++ .+......++.. -..-.+.+.++.|++.|..++++.
T Consensus 137 ~~~l~~~~~~~~~~--~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~ 189 (381)
T d1xipa_ 137 TLVILNSVNDLSAL--DLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWR 189 (381)
T ss_dssp EEEEEETTSEEEEE--ETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEE
T ss_pred eeEEEecCCCEEEE--EeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeC
Confidence 45666668888888 454544323321 001235567777877777776653
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.57 E-value=6.3 Score=31.16 Aligned_cols=107 Identities=10% Similarity=-0.055 Sum_probs=56.2
Q ss_pred ccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCC
Q 021036 127 HNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSP 206 (318)
Q Consensus 127 h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~ 206 (318)
-..++.++.+ .+. .++....++.+.++++..++.......-.. ..-...+.+++|+ +
T Consensus 124 ~~~~~~~~~~-------~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~---------~~~~~~~~~v~ws-----~ 180 (381)
T d1xipa_ 124 FEKPVFQLKN-------VNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTS---------FDVTNSQLAVLLK-----D 180 (381)
T ss_dssp CSSCEEEEEE-------CSS--EEEEEETTSEEEEEETTTCCEEEEEESEEE---------EEECSSEEEEEET-----T
T ss_pred ccccccceec-------CCc--eeEEEecCCCEEEEEeccCccccccCCcce---------EEecCCceEEEEe-----C
Confidence 3457888888 454 366677789999999988754332211000 0112356677777 6
Q ss_pred CceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEe
Q 021036 207 RLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSC 260 (318)
Q Consensus 207 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 260 (318)
.|..++++..+ ...+- .+..... .+.........|.++.|-.+..++++-
T Consensus 181 kgkq~v~~~g~-~~q~k-~~i~~~~--~~~~p~~~~~~v~sI~WL~~~~F~vvy 230 (381)
T d1xipa_ 181 RSFQSFAWRNG-EMEKQ-FEFSLPS--ELEELPVEEYSPLSVTILSPQDFLAVF 230 (381)
T ss_dssp SCEEEEEEETT-EEEEE-EEECCCH--HHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred CcEEEEEeCCC-ceeec-cCCCCcc--ccCCCcCCCcceeEEEEecCceEEEEE
Confidence 77777766322 12221 0111110 000011123467788888766665543
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=86.51 E-value=6.1 Score=33.20 Aligned_cols=26 Identities=8% Similarity=0.074 Sum_probs=21.8
Q ss_pred CCCCEEEEecCCCcEEEEEecCCcee
Q 021036 252 FDGCCLYSCSQDNFVRSWIFHGNSLS 277 (318)
Q Consensus 252 ~~~~~l~s~~~d~~v~iwd~~~~~~~ 277 (318)
-.|.++++|+.||.++.+|.++++..
T Consensus 486 tagglVF~G~~dg~l~A~Da~TGe~L 511 (573)
T d1kb0a2 486 TAGNVVFQGTADGRLVAYHAATGEKL 511 (573)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred EcCCEEEEECCCCeEEEEECCCCcEe
Confidence 35678888999999999999997764
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=86.22 E-value=5.3 Score=33.69 Aligned_cols=27 Identities=11% Similarity=0.228 Sum_probs=22.5
Q ss_pred cCCCCEEEEecCCCcEEEEEecCCcee
Q 021036 251 AFDGCCLYSCSQDNFVRSWIFHGNSLS 277 (318)
Q Consensus 251 ~~~~~~l~s~~~d~~v~iwd~~~~~~~ 277 (318)
+..+.+++.|+.||.++-+|..+++..
T Consensus 494 stagglVF~Gt~dg~l~A~Da~TGe~L 520 (582)
T d1flga_ 494 ATAGNLVFTGTGDGYFKAFDAKSGKEL 520 (582)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred EEcCCeEEEeCCCCeEEEEECCCCcEe
Confidence 345678888999999999999998764
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=85.06 E-value=8.7 Score=32.09 Aligned_cols=26 Identities=4% Similarity=0.061 Sum_probs=21.7
Q ss_pred CCCCEEEEecCCCcEEEEEecCCcee
Q 021036 252 FDGCCLYSCSQDNFVRSWIFHGNSLS 277 (318)
Q Consensus 252 ~~~~~l~s~~~d~~v~iwd~~~~~~~ 277 (318)
-.+.+++.|+.||.++-+|..+++..
T Consensus 467 TagglVF~G~~dg~l~A~Da~tGe~L 492 (560)
T d1kv9a2 467 TAGNLVFQGTAAGQMHAYSADKGEAL 492 (560)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred ECCCEEEEECCCCcEEEEECCCCcEe
Confidence 34667888999999999999998765
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=84.37 E-value=10 Score=31.71 Aligned_cols=25 Identities=8% Similarity=0.169 Sum_probs=20.9
Q ss_pred CCCEEEEecCCCcEEEEEecCCcee
Q 021036 253 DGCCLYSCSQDNFVRSWIFHGNSLS 277 (318)
Q Consensus 253 ~~~~l~s~~~d~~v~iwd~~~~~~~ 277 (318)
.+.++++++.|+.++-+|.++++..
T Consensus 474 agglVf~G~~dg~l~A~Da~tGe~l 498 (571)
T d2ad6a1 474 KGGLVWYATLDGYLKALDNKDGKEL 498 (571)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cCCEEEEECCCCeEEEEECCCCcEE
Confidence 3567788999999999999997754
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=83.48 E-value=3 Score=34.02 Aligned_cols=61 Identities=16% Similarity=0.099 Sum_probs=39.9
Q ss_pred CceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCC
Q 021036 243 QVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPG 309 (318)
Q Consensus 243 ~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 309 (318)
...++|+|.|+|++|++--..|.|++++..++....+...+.... ...-.....+|+|+|+
T Consensus 27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~------~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVN------DADGQNGLLGFAFHPD 87 (450)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCC------CTTSSCSEEEEEECTT
T ss_pred CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCcccc------ccCCCCceeeEEeCCC
Confidence 456799999999988887668999999877766554443222110 0001135678888884
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.04 E-value=7.9 Score=28.65 Aligned_cols=151 Identities=13% Similarity=-0.088 Sum_probs=80.5
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCC-CCcEEEEEe-CCCcEEE
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSN-PQVLLVTGS-SDGSVRI 161 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~-~~~~l~s~~-~d~~v~i 161 (318)
+++..+-...+.|.+.+++... ....+.........++. .+ .|.++.+.. ..+.|.-
T Consensus 89 ~~lY~~d~~~~~I~v~~~~g~~--------------~~~~~~~~~~~P~~l~v-------d~~~g~ly~~~~~~~~~I~r 147 (266)
T d1ijqa1 89 SNIYWTDSVLGTVSVADTKGVK--------------RKTLFRENGSKPRAIVV-------DPVHGFMYWTDWGTPAKIKK 147 (266)
T ss_dssp TEEEEEETTTTEEEEEETTSSS--------------EEEEEECTTCCEEEEEE-------ETTTTEEEEEECSSSCEEEE
T ss_pred ceEEEEecCCCEEEeEecCCce--------------EEEEEcCCCCCcceEEE-------EcccCeEEEeccCCCcceeE
Confidence 3455555667789999987533 11223333455678888 44 444444432 2345666
Q ss_pred EECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEE-EEEeCCCcEEEeeeccCCCeeeEeeeeec
Q 021036 162 WDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLL-AVGKGSGSFDLWKCDISCNKFDKVGSYNA 240 (318)
Q Consensus 162 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 240 (318)
.++.......... . .-...+.++++ +.++.| .+-...+.|...+++ ......+.....
T Consensus 148 ~~~dGs~~~~l~~-~-------------~~~~p~gl~iD-----~~~~~lYw~d~~~~~I~~~~~d--G~~~~~~~~~~~ 206 (266)
T d1ijqa1 148 GGLNGVDIYSLVT-E-------------NIQWPNGITLD-----LLSGRLYWVDSKLHSISSIDVN--GGNRKTILEDEK 206 (266)
T ss_dssp EETTSCCEEEEEC-S-------------SCSCEEEEEEE-----TTTTEEEEEETTTTEEEEEETT--SCSCEEEEECTT
T ss_pred eccCCCceecccc-c-------------ccceeeEEEee-----ccccEEEEecCCcCEEEEEECC--CCCEEEEEeCCC
Confidence 6665432222111 1 11245788898 655544 444567778877544 332223333222
Q ss_pred ccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCcee
Q 021036 241 HDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLS 277 (318)
Q Consensus 241 h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 277 (318)
......++++. .+.++.+-..++.|...+..++...
T Consensus 207 ~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g~~~ 242 (266)
T d1ijqa1 207 RLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDV 242 (266)
T ss_dssp TTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred cccccEEEEEE-CCEEEEEECCCCeEEEEECCCCcce
Confidence 22345667766 2334444456778888887665433
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=80.05 E-value=8.5 Score=27.72 Aligned_cols=153 Identities=12% Similarity=0.052 Sum_probs=83.5
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEEC
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDG 164 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~ 164 (318)
++++.+...|.+.++-+..++. ++ -...+|..... +..+ -|..+.+-|+
T Consensus 27 ~ll~~~~seG~vni~~l~g~~~--------------vk---LtkePI~~~~~-------Pk~~-------ldfi~f~RDV 75 (313)
T d2hu7a1 27 KLLVVGFSEGSVNAYLYDGGET--------------VK---LNREPINSVLD-------PHYG-------VGRVILVRDV 75 (313)
T ss_dssp EEEEEEEETTEEEEEEESSSSC--------------EE---CCSSCCSEECE-------ECTT-------BSEEEEEEEC
T ss_pred cEEEEEeccceEEEEEEeCCEE--------------EE---EecccccCcCC-------CccC-------cceEEEEeeh
Confidence 5888888999999999987652 11 12345554443 2211 2334555667
Q ss_pred CCcceeeeecccccccccceeeeeeccc--ceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecc-
Q 021036 165 YIQELQKSAEAHCVPFSLLKEVVTVNTV--PISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAH- 241 (318)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h- 241 (318)
..|+..+.+..-.. .++-.+..-.... .|.+++. .+.+..++|+......+| -+..++.+.+..+...
T Consensus 76 ~kGkE~Hai~~~Nl-k~~GEE~~i~spk~vRI~S~~y------ddk~vvF~Gased~~~LY--viegGklrkL~~vPpFs 146 (313)
T d2hu7a1 76 SKGAEQHALFKVNT-SRPGEEQRLEAVKPMRILSGVD------TGEAVVFTGATEDRVALY--ALDGGGLRELARLPGFG 146 (313)
T ss_dssp STTSCCEEEEEEET-TSTTCEEECTTSCSBEEEEEEE------CSSCEEEEEECSSCEEEE--EEETTEEEEEEEESSCE
T ss_pred hcCcceeeEEEEcc-CCCCeeeEecCCceEEEEEeee------cCceEEEecccCCceEEE--EEeCCceeeeccCCCcc
Confidence 76665554321000 0000011111112 3445555 467888999988889999 4557776666555432
Q ss_pred ------cCceeEEEE-cCCCCEEEEecC-CCcEEEEEecCCcee
Q 021036 242 ------DQVVTGLAW-AFDGCCLYSCSQ-DNFVRSWIFHGNSLS 277 (318)
Q Consensus 242 ------~~~v~~~~~-~~~~~~l~s~~~-d~~v~iwd~~~~~~~ 277 (318)
...|..+.+ .+...-++++.. .|.++|++...+...
T Consensus 147 FVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri~tpkeGS~~ 190 (313)
T d2hu7a1 147 FVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFS 190 (313)
T ss_dssp EEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEEECCSSEEEE
T ss_pred eEEeccCCeEEEEeeecCCcceEEEEecccCCEEEecCCCCccc
Confidence 233444433 333334555555 788888887655443
|