Citrus Sinensis ID: 021126

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------
MAQVSKICNGIQNTRVFTNQTKLQKPKSVSAISFRSQSRGCSSSWGLRYNDRLGNNNTVRTVRASASVGTAEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYK
cccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccccccccccEEEcccccEEEEEEccccHHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHHHcccEEEEEccccEEEEEccccccccccccccccEEEccccHHHHHHHHHHHHHccccEEEEEEccccccccccHHHHHHHHHcccEEEEccccccccEEEEccccccccEEEEcccccHHHHHHHHHHHHccccccEEEEccccccccHHHHHHHHHHHcccEEEEcccccEEEEccccccc
cccHHHHHcccccccccccccccccccccHHHHHHHHccccccccccccEEEEEEccccccccEEEEEEcccccEEccEEEEccccEEcEEEEccEcHHHHHHHHHHHHHcEcEEEEEcccccHHHHHHHHHHHHcccEEEEccccccEEEEccccccccHccccccEEEEccccHHHHHHHHHHccccEccccEEEEccHHHHHcccHHHHHHHHHccccEEEccccccccEEEccccccccEEEEEEEcccHHHHHHHHHHHHHccccEEEEEEEEEccHHHHHHHHHHHHHcccccEEcccccEEEEccccccc
MAQVSKICngiqntrvftnqtklqkpksvsaisfrsqsrgcssswglryndrlgnnntvRTVRasasvgtaekqskASEIVLQPireisgtvtlpgskslSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEgcgglfplakqqtgEIELFLgnagtamrpLTAAVTAAggnlsyildgvprmrerpigDLVTGLKQlgadvdcilgtncppvringkgglpggkvklsGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGvfvehsdswdRFFIQGGQKYK
maqvskicngiqntrvftnqtklqkpksvsaisfrsqsrgcssswglryndrlgnnNTVRTVRAsasvgtaekqskaseivlqpireisgtvtlpgsksLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFfiqggqkyk
MAQVSKICNGIQNTRVFTNQTKLQKPKSVSAIsfrsqsrgcsssWGLRYNDRLGNNNTVRTVRASASVGTAEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINgkgglpggkvklsgklssQYltallmaaplalGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYK
*******CNGIQNTRVF***************************WGLRYNDR***************************IVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQ******
*******CNGIQNTRVFTNQTKLQ*******************************************************IVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQK**
MAQVSKICNGIQNTRVFTNQT*********************SSWGLRYNDRLGNNNTVRTVR*************ASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYK
************NTRVFTNQTKLQKPKSVSAISFRSQSRGCSSSWGLRYNDRLGNNNTVRTVRASASVGTAEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGG****
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAQVSKICNGIQNTRVFTNQTKLQKPKSVSAISFRSQSRGCSSSWGLRYNDRLGNNNTVRTVRASASVGTAEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query317 2.2.26 [Sep-21-2011]
P05466 520 3-phosphoshikimate 1-carb yes no 0.990 0.603 0.719 1e-131
P17688 516 3-phosphoshikimate 1-carb N/A no 0.984 0.604 0.733 1e-123
P11043 516 3-phosphoshikimate 1-carb N/A no 0.990 0.608 0.719 1e-115
P10748 520 3-phosphoshikimate 1-carb N/A no 0.990 0.603 0.697 1e-110
P23981 518 3-phosphoshikimate 1-carb N/A no 0.984 0.602 0.679 1e-107
A6Q7Q0 427 3-phosphoshikimate 1-carb yes no 0.722 0.536 0.523 3e-60
Q3ILA2 425 3-phosphoshikimate 1-carb yes no 0.725 0.541 0.527 1e-59
A1STZ0 428 3-phosphoshikimate 1-carb yes no 0.731 0.542 0.533 1e-59
B7VM38 426 3-phosphoshikimate 1-carb yes no 0.722 0.537 0.527 3e-58
Q87QX9 426 3-phosphoshikimate 1-carb yes no 0.722 0.537 0.514 5e-58
>sp|P05466|AROA_ARATH 3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic OS=Arabidopsis thaliana GN=At2g45300 PE=2 SV=3 Back     alignment and function desciption
 Score =  466 bits (1200), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 231/321 (71%), Positives = 268/321 (83%), Gaps = 7/321 (2%)

Query: 1   MAQVSKICNGIQNTRVFTNQTKLQKPKSVSAISFRSQSRG----CSSSWGLRYNDRLGNN 56
           MAQVS+ICNG+QN  + +N +K  + KS  ++S ++Q        SSSWGL+ +      
Sbjct: 1   MAQVSRICNGVQNPSLISNLSKSSQRKSPLSVSLKTQQHPRAYPISSSWGLKKSGMTLIG 60

Query: 57  NTVRTVRASASVGTAEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTV 116
           + +R ++  +SV TAEK   ASEIVLQPIREISG + LPGSKSLSNRILLLAALSEGTTV
Sbjct: 61  SELRPLKVMSSVSTAEK---ASEIVLQPIREISGLIKLPGSKSLSNRILLLAALSEGTTV 117

Query: 117 VDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAG 176
           VDNLL+S+DI++MLDALK+LGLNVE D    RA+VEGCGG+FP +     +IEL+LGNAG
Sbjct: 118 VDNLLNSDDINYMLDALKRLGLNVETDSENNRAVVEGCGGIFPASIDSKSDIELYLGNAG 177

Query: 177 TAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRIN 236
           TAMRPLTAAVTAAGGN SY+LDGVPRMRERPIGDLV GLKQLGADV+C LGTNCPPVR+N
Sbjct: 178 TAMRPLTAAVTAAGGNASYVLDGVPRMRERPIGDLVVGLKQLGADVECTLGTNCPPVRVN 237

Query: 237 GKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFG 296
             GGLPGGKVKLSG +SSQYLTALLM+APLALG+VEIEI+DKLISVPYVEMTLKLMERFG
Sbjct: 238 ANGGLPGGKVKLSGSISSQYLTALLMSAPLALGDVEIEIVDKLISVPYVEMTLKLMERFG 297

Query: 297 VFVEHSDSWDRFFIQGGQKYK 317
           V VEHSDSWDRFF++GGQKYK
Sbjct: 298 VSVEHSDSWDRFFVKGGQKYK 318

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 1EC: 9
>sp|P17688|AROA_BRANA 3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic OS=Brassica napus PE=3 SV=1 Back     alignment and function description
>sp|P11043|AROA_PETHY 3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic OS=Petunia hybrida PE=1 SV=1 Back     alignment and function description
>sp|P10748|AROA_SOLLC 3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic OS=Solanum lycopersicum PE=2 SV=1 Back     alignment and function description
>sp|P23981|AROA1_TOBAC 3-phosphoshikimate 1-carboxyvinyltransferase 1, chloroplastic OS=Nicotiana tabacum GN=EPSPS-1 PE=2 SV=1 Back     alignment and function description
>sp|A6Q7Q0|AROA_SULNB 3-phosphoshikimate 1-carboxyvinyltransferase OS=Sulfurovum sp. (strain NBC37-1) GN=aroA PE=3 SV=1 Back     alignment and function description
>sp|Q3ILA2|AROA_PSEHT 3-phosphoshikimate 1-carboxyvinyltransferase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=aroA PE=3 SV=1 Back     alignment and function description
>sp|A1STZ0|AROA_PSYIN 3-phosphoshikimate 1-carboxyvinyltransferase OS=Psychromonas ingrahamii (strain 37) GN=aroA PE=3 SV=1 Back     alignment and function description
>sp|B7VM38|AROA_VIBSL 3-phosphoshikimate 1-carboxyvinyltransferase OS=Vibrio splendidus (strain LGP32) GN=aroA PE=3 SV=1 Back     alignment and function description
>sp|Q87QX9|AROA_VIBPA 3-phosphoshikimate 1-carboxyvinyltransferase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=aroA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query317
76782198 520 putative 5-enolpyruvylshikimate 3-phosph 1.0 0.609 0.761 1e-135
15225450 520 3-phosphoshikimate 1-carboxyvinyltransfe 0.990 0.603 0.719 1e-129
295790 520 EPSP [Arabidopsis thaliana] 0.990 0.603 0.719 1e-129
218675784410 5-enolpyruvylshikimate-3-phosphate synth 0.987 0.763 0.762 1e-125
157142998 521 5-enolpyruvylshikimate-3-phosphate synth 0.987 0.600 0.762 1e-125
164564335 521 5-enolpyruvylshikimate-3-phosphate synth 0.987 0.600 0.759 1e-125
18251236 518 5-enolpyruvylshikimate-3-phosphate synth 0.990 0.606 0.736 1e-123
257228991 518 5-enolpyruvylshikimate-3-phosphate synth 0.996 0.610 0.697 1e-122
114171 516 RecName: Full=3-phosphoshikimate 1-carbo 0.984 0.604 0.733 1e-121
257228989 518 5-enolpyruvylshikimate-3-phosphate synth 0.996 0.610 0.694 1e-121
>gi|76782198|gb|ABA54869.1| putative 5-enolpyruvylshikimate 3-phosphate synthase [Fagus sylvatica] Back     alignment and taxonomy information
 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 242/318 (76%), Positives = 270/318 (84%), Gaps = 1/318 (0%)

Query: 1   MAQVSKICNGIQNTRVFTNQTKLQKPKSVSAISFRSQSRGCSSSWGLRYNDRLG-NNNTV 59
           MAQVSKIC+G Q+T++F N  K QKPKS+  ISF SQ  G S+SW L+        +  V
Sbjct: 1   MAQVSKICSGAQSTQIFHNNPKPQKPKSIGFISFGSQLLGSSTSWTLKNKHVCAVGSAKV 60

Query: 60  RTVRASASVGTAEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDN 119
            T R SASV TAEK S   EIVLQPI++ISGT+ LPGSKSLSNRILLLAALSEGTTVVDN
Sbjct: 61  GTFRVSASVATAEKPSTVPEIVLQPIKDISGTIKLPGSKSLSNRILLLAALSEGTTVVDN 120

Query: 120 LLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAM 179
           LL+S+DIH+ML ALK LGL VEED A+KRAIVEGCGGLFP+ K+   EI+LFLGNAGTAM
Sbjct: 121 LLNSDDIHYMLGALKTLGLRVEEDKAIKRAIVEGCGGLFPVGKESRDEIQLFLGNAGTAM 180

Query: 180 RPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKG 239
           RPLTAAVT AGGN SY+LDGVPRMRERPIGDLV GL+QLGA+VDC LGT CPPVR+ GKG
Sbjct: 181 RPLTAAVTVAGGNSSYVLDGVPRMRERPIGDLVDGLQQLGANVDCFLGTKCPPVRVFGKG 240

Query: 240 GLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFV 299
           GLPGGKVKLSG +SSQYLTAL+MAAPLALG+VEIEIIDKLISVPYVEMTLKLMERFG+ V
Sbjct: 241 GLPGGKVKLSGSISSQYLTALVMAAPLALGDVEIEIIDKLISVPYVEMTLKLMERFGISV 300

Query: 300 EHSDSWDRFFIQGGQKYK 317
           EH+DSWDRF I+GGQKYK
Sbjct: 301 EHNDSWDRFLIRGGQKYK 318

Source: Fagus sylvatica

Species: Fagus sylvatica

Genus: Fagus

Family: Fagaceae

Order: Fagales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|15225450|ref|NP_182055.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Arabidopsis thaliana] gi|166898083|sp|P05466.3|AROA_ARATH RecName: Full=3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic; AltName: Full=5-enolpyruvylshikimate-3-phosphate synthase; Short=EPSP synthase; Flags: Precursor gi|2583124|gb|AAB82633.1| 5-enolpyruvylshikimate-3-phosphate (EPSP) synthase [Arabidopsis thaliana] gi|63003818|gb|AAY25438.1| At2g45300 [Arabidopsis thaliana] gi|110742505|dbj|BAE99170.1| 5-enolpyruvylshikimate-3-phosphate (EPSP) synthase [Arabidopsis thaliana] gi|330255442|gb|AEC10536.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|295790|emb|CAA29828.1| EPSP [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|218675784|gb|ACL00597.1| 5-enolpyruvylshikimate-3-phosphate synthase [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|157142998|gb|ABV24481.1| 5-enolpyruvylshikimate-3-phosphate synthase [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|164564335|gb|ABY61050.1| 5-enolpyruvylshikimate-3-phosphate synthase [Gossypium hirsutum] gi|193230774|gb|ACF16410.1| 5-enolpyruvylshikimate-3-phosphate synthase [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|18251236|gb|AAL65913.1|AF440389_1 5-enolpyruvylshikimate-3-phosphate synthase [Orychophragmus violaceus] Back     alignment and taxonomy information
>gi|257228991|gb|ACV53022.1| 5-enolpyruvylshikimate-3-phosphate synthase [Amaranthus palmeri] Back     alignment and taxonomy information
>gi|114171|sp|P17688.1|AROA_BRANA RecName: Full=3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic; AltName: Full=5-enolpyruvylshikimate-3-phosphate synthase; Short=EPSP synthase; Flags: Precursor gi|17815|emb|CAA35839.1| 5-enolpyruvylshikimate-3-phosphate synthase [Brassica napus] Back     alignment and taxonomy information
>gi|257228989|gb|ACV53021.1| 5-enolpyruvylshikimate-3-phosphate synthase [Amaranthus palmeri] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query317
TAIR|locus:2050812 520 AT2G45300 [Arabidopsis thalian 0.990 0.603 0.626 2.4e-99
TAIR|locus:2028544 521 AT1G48860 [Arabidopsis thalian 0.851 0.518 0.684 7.8e-94
UNIPROTKB|Q9KRB0 426 aroA "3-phosphoshikimate 1-car 0.722 0.537 0.459 7.1e-45
TIGR_CMR|VC_1732 426 VC_1732 "3-phosphoshikimate 1- 0.722 0.537 0.459 7.1e-45
TIGR_CMR|CPS_2333 426 CPS_2333 "3-phosphoshikimate 1 0.728 0.542 0.426 6.6e-42
TIGR_CMR|SO_2404 426 SO_2404 "3-phosphoshikimate 1- 0.716 0.532 0.419 5.3e-40
UNIPROTKB|P0A6D3 427 aroA "3-phosphoshikimate-1-car 0.722 0.536 0.420 6.8e-40
ASPGD|ASPL0000055969 1583 aromA [Emericella nidulans (ta 0.735 0.147 0.346 3e-24
SGD|S000002534 1588 ARO1 "Pentafunctional arom pro 0.694 0.138 0.347 7.3e-23
CGD|CAL0004346 1551 ARO1 [Candida albicans (taxid: 0.690 0.141 0.341 9e-23
TAIR|locus:2050812 AT2G45300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 986 (352.1 bits), Expect = 2.4e-99, P = 2.4e-99
 Identities = 201/321 (62%), Positives = 234/321 (72%)

Query:     1 MAQVSKICNGIQNTRVFTNQTKLQKPKSVSAIXXXXX----XXXXXXXWGLRYNDRLGNN 56
             MAQVS+ICNG+QN  + +N +K  + KS  ++                WGL+ +      
Sbjct:     1 MAQVSRICNGVQNPSLISNLSKSSQRKSPLSVSLKTQQHPRAYPISSSWGLKKSGMTLIG 60

Query:    57 NTVRTVRASASVGTAEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTV 116
             + +R ++  +SV TAEK   ASEIVLQPIREISG + LPGSKSLSNRILLLAALSEGTTV
Sbjct:    61 SELRPLKVMSSVSTAEK---ASEIVLQPIREISGLIKLPGSKSLSNRILLLAALSEGTTV 117

Query:   117 VDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAG 176
             VDNLL+S+DI++MLDALK+LGLNVE D    RA+VEGCGG+FP +     +IEL+LGNAG
Sbjct:   118 VDNLLNSDDINYMLDALKRLGLNVETDSENNRAVVEGCGGIFPASIDSKSDIELYLGNAG 177

Query:   177 TAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRIN 236
             TAMRPLTAAVTAAGGN SY+LDGVPRMRERPIGDLV GLKQLGADV+C LGTNCPPVR+N
Sbjct:   178 TAMRPLTAAVTAAGGNASYVLDGVPRMRERPIGDLVVGLKQLGADVECTLGTNCPPVRVN 237

Query:   237 XXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFG 296
                               QY            G+VEIEI+DKLISVPYVEMTLKLMERFG
Sbjct:   238 ANGGLPGGKVKLSGSISSQYLTALLMSAPLALGDVEIEIVDKLISVPYVEMTLKLMERFG 297

Query:   297 VFVEHSDSWDRFFIQGGQKYK 317
             V VEHSDSWDRFF++GGQKYK
Sbjct:   298 VSVEHSDSWDRFFVKGGQKYK 318
GO:0003824 "catalytic activity" evidence=IEA
GO:0003866 "3-phosphoshikimate 1-carboxyvinyltransferase activity" evidence=IEA;IMP
GO:0009507 "chloroplast" evidence=ISM;IDA;TAS
GO:0016765 "transferase activity, transferring alkyl or aryl (other than methyl) groups" evidence=IEA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0005829 "cytosol" evidence=RCA
GO:0009073 "aromatic amino acid family biosynthetic process" evidence=TAS
GO:0009423 "chorismate biosynthetic process" evidence=IMP
GO:0018920 "glyphosate metabolic process" evidence=IMP
TAIR|locus:2028544 AT1G48860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KRB0 aroA "3-phosphoshikimate 1-carboxyvinyltransferase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_1732 VC_1732 "3-phosphoshikimate 1-carboxyvinyltransferase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_2333 CPS_2333 "3-phosphoshikimate 1-carboxyvinyltransferase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|SO_2404 SO_2404 "3-phosphoshikimate 1-carboxyvinyltransferase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|P0A6D3 aroA "3-phosphoshikimate-1-carboxyvinyltransferase" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
ASPGD|ASPL0000055969 aromA [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
SGD|S000002534 ARO1 "Pentafunctional arom protein" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
CGD|CAL0004346 ARO1 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P05466AROA_ARATH2, ., 5, ., 1, ., 1, 90.71960.99050.6038yesno
P11043AROA_PETHY2, ., 5, ., 1, ., 1, 90.71920.99050.6085N/Ano
P17688AROA_BRANA2, ., 5, ., 1, ., 1, 90.73350.98420.6046N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.5.1.190.914
3rd Layer2.5.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query317
PLN02338 443 PLN02338, PLN02338, 3-phosphoshikimate 1-carboxyvi 1e-166
PRK11860 661 PRK11860, PRK11860, bifunctional 3-phosphoshikimat 1e-86
cd01556 409 cd01556, EPSP_synthase, EPSP synthase domain 2e-85
PRK02427 435 PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvi 5e-85
TIGR01356 409 TIGR01356, aroA, 3-phosphoshikimate 1-carboxyvinyl 2e-80
COG0128 428 COG0128, AroA, 5-enolpyruvylshikimate-3-phosphate 1e-77
pfam00275 415 pfam00275, EPSP_synthase, EPSP synthase (3-phospho 6e-76
PRK11861 673 PRK11861, PRK11861, bifunctional prephenate dehydr 6e-60
cd01554 408 cd01554, EPT-like, Enol pyruvate transferases fami 1e-47
PRK14806 735 PRK14806, PRK14806, bifunctional cyclohexadienyl d 1e-15
cd01555 400 cd01555, UdpNAET, UDP-N-acetylglucosamine enolpyru 7e-06
pfam00275415 pfam00275, EPSP_synthase, EPSP synthase (3-phospho 1e-04
COG0766 421 COG0766, MurA, UDP-N-acetylglucosamine enolpyruvyl 3e-04
TIGR01072 416 TIGR01072, murA, UDP-N-acetylglucosamine 1-carboxy 0.001
COG0128428 COG0128, AroA, 5-enolpyruvylshikimate-3-phosphate 0.002
PRK09369 417 PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carb 0.003
>gnl|CDD|177972 PLN02338, PLN02338, 3-phosphoshikimate 1-carboxyvinyltransferase Back     alignment and domain information 
 Score =  470 bits (1211), Expect = e-166
 Identities = 202/241 (83%), Positives = 217/241 (90%)

Query: 77  ASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKL 136
           A EI LQPI+EISGTV LPGSKSLSNRILLLAALSEGTTVVDNLL S+DI +ML ALK L
Sbjct: 1   AEEITLQPIKEISGTVKLPGSKSLSNRILLLAALSEGTTVVDNLLDSDDIRYMLGALKTL 60

Query: 137 GLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYI 196
           GLNVEED    RA+VEGCGG FP++     ++ELFLGNAGTAMRPLTAAVTAAGGN SY+
Sbjct: 61  GLNVEEDSENNRAVVEGCGGKFPVSGDSKEDVELFLGNAGTAMRPLTAAVTAAGGNASYV 120

Query: 197 LDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQY 256
           LDGVPRMRERPIGDLV GLKQLGADV+C LGTNCPPVR+N  GGLPGGKVKLSG +SSQY
Sbjct: 121 LDGVPRMRERPIGDLVDGLKQLGADVECTLGTNCPPVRVNAAGGLPGGKVKLSGSISSQY 180

Query: 257 LTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKY 316
           LTALLMAAPLALG+VEIEI+DKLISVPYVEMTLKLMERFGV VEHSDSWDRFFI+GGQKY
Sbjct: 181 LTALLMAAPLALGDVEIEIVDKLISVPYVEMTLKLMERFGVSVEHSDSWDRFFIKGGQKY 240

Query: 317 K 317
           K
Sbjct: 241 K 241

Length = 443
>gnl|CDD|237003 PRK11860, PRK11860, bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional Back     alignment and domain information
>gnl|CDD|238797 cd01556, EPSP_synthase, EPSP synthase domain Back     alignment and domain information
>gnl|CDD|235037 PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|233373 TIGR01356, aroA, 3-phosphoshikimate 1-carboxyvinyltransferase Back     alignment and domain information
>gnl|CDD|223206 COG0128, AroA, 5-enolpyruvylshikimate-3-phosphate synthase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|215834 pfam00275, EPSP_synthase, EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Back     alignment and domain information
>gnl|CDD|183343 PRK11861, PRK11861, bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|238795 cd01554, EPT-like, Enol pyruvate transferases family includes EPSP synthases and UDP-N-acetylglucosamine enolpyruvyl transferase Back     alignment and domain information
>gnl|CDD|237820 PRK14806, PRK14806, bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|238796 cd01555, UdpNAET, UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall Back     alignment and domain information
>gnl|CDD|215834 pfam00275, EPSP_synthase, EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Back     alignment and domain information
>gnl|CDD|223837 COG0766, MurA, UDP-N-acetylglucosamine enolpyruvyl transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|162190 TIGR01072, murA, UDP-N-acetylglucosamine 1-carboxyvinyltransferase Back     alignment and domain information
>gnl|CDD|223206 COG0128, AroA, 5-enolpyruvylshikimate-3-phosphate synthase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|236486 PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 317
COG0128 428 AroA 5-enolpyruvylshikimate-3-phosphate synthase [ 100.0
PLN02338 443 3-phosphoshikimate 1-carboxyvinyltransferase 100.0
PF00275 419 EPSP_synthase: EPSP synthase (3-phosphoshikimate 1 100.0
KOG0692 595 consensus Pentafunctional AROM protein [Amino acid 100.0
PRK11861 673 bifunctional prephenate dehydrogenase/3-phosphoshi 100.0
PRK11860 661 bifunctional 3-phosphoshikimate 1-carboxyvinyltran 100.0
cd01554 408 EPT-like Enol pyruvate transferases family include 100.0
TIGR01356 409 aroA 3-phosphoshikimate 1-carboxyvinyltransferase. 100.0
PRK02427 435 3-phosphoshikimate 1-carboxyvinyltransferase; Prov 100.0
cd01556 409 EPSP_synthase EPSP synthase domain. 3-phosphoshiki 100.0
PRK14806 735 bifunctional cyclohexadienyl dehydrogenase/ 3-phos 99.97
PRK09369 417 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; 99.97
COG0766 421 MurA UDP-N-acetylglucosamine enolpyruvyl transfera 99.96
PRK12830 417 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; 99.96
TIGR01072 416 murA UDP-N-acetylglucosamine 1-carboxyvinyltransfe 99.96
cd01555 400 UdpNAET UDP-N-acetylglucosamine enolpyruvyl transf 99.95
COG0128428 AroA 5-enolpyruvylshikimate-3-phosphate synthase [ 99.94
PLN02338443 3-phosphoshikimate 1-carboxyvinyltransferase 99.87
PF00275419 EPSP_synthase: EPSP synthase (3-phosphoshikimate 1 99.87
cd01556409 EPSP_synthase EPSP synthase domain. 3-phosphoshiki 99.86
PRK11860 661 bifunctional 3-phosphoshikimate 1-carboxyvinyltran 99.86
cd01554408 EPT-like Enol pyruvate transferases family include 99.86
PRK11861673 bifunctional prephenate dehydrogenase/3-phosphoshi 99.86
TIGR01356409 aroA 3-phosphoshikimate 1-carboxyvinyltransferase. 99.85
COG0766421 MurA UDP-N-acetylglucosamine enolpyruvyl transfera 99.83
PRK12830417 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; 99.81
PRK02427435 3-phosphoshikimate 1-carboxyvinyltransferase; Prov 99.8
PRK09369417 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; 99.79
PRK14806735 bifunctional cyclohexadienyl dehydrogenase/ 3-phos 99.78
TIGR01072416 murA UDP-N-acetylglucosamine 1-carboxyvinyltransfe 99.78
cd01555 400 UdpNAET UDP-N-acetylglucosamine enolpyruvyl transf 99.75
cd01553211 EPT_RTPC-like This domain family includes the Enol 99.32
KOG0692 595 consensus Pentafunctional AROM protein [Amino acid 99.25
cd01553211 EPT_RTPC-like This domain family includes the Enol 99.09
PF01137228 RTC: RNA 3'-terminal phosphate cyclase; InterPro: 96.95
COG0430 341 RCL1 RNA 3'-terminal phosphate cyclase [RNA proces 96.26
cd00295 338 RNA_Cyclase RNA 3' phosphate cyclase domain - RNA 95.66
TIGR03399 326 RNA_3prim_cycl RNA 3'-phosphate cyclase. Members o 95.64
cd00874 326 RNA_Cyclase_Class_II RNA 3' phosphate cyclase doma 95.44
PRK04204 343 RNA 3'-terminal-phosphate cyclase; Provisional 95.43
COG0430341 RCL1 RNA 3'-terminal phosphate cyclase [RNA proces 95.06
cd00875 341 RNA_Cyclase_Class_I RNA 3' phosphate cyclase domai 94.9
TIGR03400 360 18S_RNA_Rcl1p 18S rRNA biogenesis protein RCL1. Me 94.76
TIGR03400 360 18S_RNA_Rcl1p 18S rRNA biogenesis protein RCL1. Me 94.66
PRK04204343 RNA 3'-terminal-phosphate cyclase; Provisional 94.56
TIGR03399326 RNA_3prim_cycl RNA 3'-phosphate cyclase. Members o 94.24
PF01137228 RTC: RNA 3'-terminal phosphate cyclase; InterPro: 93.67
cd00874326 RNA_Cyclase_Class_II RNA 3' phosphate cyclase doma 93.58
cd00875 341 RNA_Cyclase_Class_I RNA 3' phosphate cyclase domai 93.13
cd00295338 RNA_Cyclase RNA 3' phosphate cyclase domain - RNA 92.21
KOG3980 361 consensus RNA 3'-terminal phosphate cyclase [RNA p 82.89
>COG0128 AroA 5-enolpyruvylshikimate-3-phosphate synthase [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=4e-41  Score=325.01  Aligned_cols=219  Identities=42%  Similarity=0.657  Sum_probs=194.6

Q ss_pred             CceeeEEEecCCHHHHHHHHHHHhhcCCcEEEeeCCCChhHHHHHHHHHHcCCEEEEcCCccEEEEEcCCCCcccccccC
Q 021126           86 REISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQT  165 (317)
Q Consensus        86 ~~l~G~v~ipgskS~a~r~LlaAaLa~g~t~I~n~~~s~dv~~~l~~L~~lGa~I~~~~~~~~l~V~g~~~~~~~~~~~~  165 (317)
                      ++++|++++|||||.++|+|++|+|++|+++|+|++.++|+..|+++|++||++|++.+  ..++|+|.++.+..|    
T Consensus        11 ~~l~G~v~~PgSKSishRalilaaLA~g~s~i~~~L~s~D~~~tl~a~~~lG~~i~~~~--~~~~v~g~g~~~~~~----   84 (428)
T COG0128          11 SPLRGTVRAPGSKSISHRALLLAALAEGESTITNLLDSEDTLATLEALRALGARIEKEG--DTLVVRGTGGELKEP----   84 (428)
T ss_pred             CccceEEECCCCccHHHHHHHHHHHcCCceEEeeeeccHhHHHHHHHHHHhCCeEEccC--CEEEEeCCCCCcCCC----
Confidence            57999999999999999999999999999999999999999999999999999999866  489999986522333    


Q ss_pred             CceEEEecCchhhHHHHHHHHHHcCCCcEEEEeCCCCCCCCchHHHHHHHHhCCCeEEEeCCCCcccEEEEcCCCCCceE
Q 021126          166 GEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGK  245 (317)
Q Consensus       166 ~~~~i~~g~sgta~r~l~a~la~~~~~~~~~i~G~~~l~~rpi~~l~~~L~~lGa~i~~~~~~~~~Pi~I~g~~~l~g~~  245 (317)
                       ...+|+|||||++||+++++++. .++.++++|+++|++||+.++++.|++|||+|...++++++|+.|+|+  +.++.
T Consensus        85 -~~~l~~GnSGTt~R~l~glla~~-~~~~~~l~Gd~sl~~RPm~~l~~aLr~~Ga~i~~~~~~~~~Pl~i~G~--~~~~~  160 (428)
T COG0128          85 -PAVLDCGNSGTTLRLLTGLLALG-SPGETVLTGDESLRKRPMGPLVDALRQLGAKIDGREGEGYLPLTIKGG--LKGGE  160 (428)
T ss_pred             -CceeeeccchhHHHHHHHHHhcC-CCCeEEEECChhhhhCCcHHHHHHHHHCCcEEEecCCCCcCCEEEECC--CCCce
Confidence             56899999999999999998752 358999999999999999999999999999999987668999999995  88889


Q ss_pred             EEeCCCCCHHHHHHHHHHHhcCCCeEEEEEcccccccchHHHHHHHHHHcCCEEEEeCCcceEEEecCCCC
Q 021126          246 VKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKY  316 (317)
Q Consensus       246 i~l~g~~ssq~~saLllaA~~a~G~~~I~~~~~~~s~~yv~~t~~~L~~lG~~v~~~~d~~~i~I~G~~~~  316 (317)
                      ++++++.|||++++|+|+|+++.+.+++...+++++++|+++|+++|++||++|+.++ + .|.|+|+|+|
T Consensus       161 i~i~~~~SSq~vsslL~~a~l~~~~~~~~~~~~~~s~~yid~T~~mL~~FGv~v~~~~-~-~~~i~~g~~~  229 (428)
T COG0128         161 VEIDGPVSSQQVSSLLLLAPLLAEGTTIIVGGVLESKPYIDHTLDMLKAFGVEVENEG-Y-RFYIPGGQKL  229 (428)
T ss_pred             EEEeccchHHHHHHHHHHHhhcCCCcEEEecCccCCccHHHHHHHHHHHcCCeEEeec-c-EEEECCCccc
Confidence            9999999999999999999988744443333468899999999999999999999986 3 8999999865

>PLN02338 3-phosphoshikimate 1-carboxyvinyltransferase Back     alignment and domain information
>PF00275 EPSP_synthase: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); InterPro: IPR001986 This entry represents the core domain of 3-phosphoshikimate 1-carboxyvinyltransferase and UDP-N-acetylglucosamine 1-carboxyvinyltransferase Back     alignment and domain information
>KOG0692 consensus Pentafunctional AROM protein [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional Back     alignment and domain information
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional Back     alignment and domain information
>cd01554 EPT-like Enol pyruvate transferases family includes EPSP synthases and UDP-N-acetylglucosamine enolpyruvyl transferase Back     alignment and domain information
>TIGR01356 aroA 3-phosphoshikimate 1-carboxyvinyltransferase Back     alignment and domain information
>PRK02427 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional Back     alignment and domain information
>cd01556 EPSP_synthase EPSP synthase domain Back     alignment and domain information
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional Back     alignment and domain information
>PRK09369 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated Back     alignment and domain information
>COG0766 MurA UDP-N-acetylglucosamine enolpyruvyl transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK12830 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Reviewed Back     alignment and domain information
>TIGR01072 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase Back     alignment and domain information
>cd01555 UdpNAET UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall Back     alignment and domain information
>COG0128 AroA 5-enolpyruvylshikimate-3-phosphate synthase [Amino acid transport and metabolism] Back     alignment and domain information
>PLN02338 3-phosphoshikimate 1-carboxyvinyltransferase Back     alignment and domain information
>PF00275 EPSP_synthase: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); InterPro: IPR001986 This entry represents the core domain of 3-phosphoshikimate 1-carboxyvinyltransferase and UDP-N-acetylglucosamine 1-carboxyvinyltransferase Back     alignment and domain information
>cd01556 EPSP_synthase EPSP synthase domain Back     alignment and domain information
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional Back     alignment and domain information
>cd01554 EPT-like Enol pyruvate transferases family includes EPSP synthases and UDP-N-acetylglucosamine enolpyruvyl transferase Back     alignment and domain information
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional Back     alignment and domain information
>TIGR01356 aroA 3-phosphoshikimate 1-carboxyvinyltransferase Back     alignment and domain information
>COG0766 MurA UDP-N-acetylglucosamine enolpyruvyl transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK12830 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Reviewed Back     alignment and domain information
>PRK02427 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional Back     alignment and domain information
>PRK09369 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated Back     alignment and domain information
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional Back     alignment and domain information
>TIGR01072 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase Back     alignment and domain information
>cd01555 UdpNAET UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall Back     alignment and domain information
>cd01553 EPT_RTPC-like This domain family includes the Enolpyruvate transferase (EPT) family and the RNA 3' phosphate cyclase family (RTPC) Back     alignment and domain information
>KOG0692 consensus Pentafunctional AROM protein [Amino acid transport and metabolism] Back     alignment and domain information
>cd01553 EPT_RTPC-like This domain family includes the Enolpyruvate transferase (EPT) family and the RNA 3' phosphate cyclase family (RTPC) Back     alignment and domain information
>PF01137 RTC: RNA 3'-terminal phosphate cyclase; InterPro: IPR023797 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea Back     alignment and domain information
>COG0430 RCL1 RNA 3'-terminal phosphate cyclase [RNA processing and modification] Back     alignment and domain information
>cd00295 RNA_Cyclase RNA 3' phosphate cyclase domain - RNA phosphate cyclases are enzymes that catalyze the ATP-dependent conversion of 3'-phosphate at the end of RNA into 2', 3'-cyclic phosphodiester bond Back     alignment and domain information
>TIGR03399 RNA_3prim_cycl RNA 3'-phosphate cyclase Back     alignment and domain information
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II) Back     alignment and domain information
>PRK04204 RNA 3'-terminal-phosphate cyclase; Provisional Back     alignment and domain information
>COG0430 RCL1 RNA 3'-terminal phosphate cyclase [RNA processing and modification] Back     alignment and domain information
>cd00875 RNA_Cyclase_Class_I RNA 3' phosphate cyclase domain (class I) This subfamily of cyclase-like proteins are encoded in eukaryotic genomes Back     alignment and domain information
>TIGR03400 18S_RNA_Rcl1p 18S rRNA biogenesis protein RCL1 Back     alignment and domain information
>TIGR03400 18S_RNA_Rcl1p 18S rRNA biogenesis protein RCL1 Back     alignment and domain information
>PRK04204 RNA 3'-terminal-phosphate cyclase; Provisional Back     alignment and domain information
>TIGR03399 RNA_3prim_cycl RNA 3'-phosphate cyclase Back     alignment and domain information
>PF01137 RTC: RNA 3'-terminal phosphate cyclase; InterPro: IPR023797 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea Back     alignment and domain information
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II) Back     alignment and domain information
>cd00875 RNA_Cyclase_Class_I RNA 3' phosphate cyclase domain (class I) This subfamily of cyclase-like proteins are encoded in eukaryotic genomes Back     alignment and domain information
>cd00295 RNA_Cyclase RNA 3' phosphate cyclase domain - RNA phosphate cyclases are enzymes that catalyze the ATP-dependent conversion of 3'-phosphate at the end of RNA into 2', 3'-cyclic phosphodiester bond Back     alignment and domain information
>KOG3980 consensus RNA 3'-terminal phosphate cyclase [RNA processing and modification] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query317
3nvs_A 450 1.02 Angstrom Resolution Crystal Structure Of 3-Pho 2e-44
3ti2_A228 1.90 Angstrom Resolution Crystal Structure Of N-Ter 6e-40
1g6s_A 427 Structure Of Epsp Synthase Liganded With Shikimate- 2e-37
1q36_A 427 Epsp Synthase (Asp313ala) Liganded With Tetrahedral 2e-37
1eps_A 427 Structure And Topological Symmetry Of The Glyphosph 4e-37
1mi4_A 427 Glyphosate Insensitive G96a Mutant Epsp Synthase Li 8e-37
3fjx_A 427 E. Coli Epsp Synthase (T97i) Liganded With S3p Leng 9e-37
2qfs_A 427 E.coli Epsp Synthase Pro101ser Liganded With S3p Le 2e-36
2qfq_A 427 E. Coli Epsp Synthase Pro101leu Liganded With S3p L 4e-36
3fk0_A 427 E. Coli Epsp Synthase (Tips Mutation) Liganded With 1e-35
1p88_A216 Substrate-Induced Structural Changes To The Isolate 3e-29
4gfp_A 462 2.7 Angstrom Resolution Structure Of 3-Phosphoshiki 9e-15
3roi_A 441 2.20 Angstrom Resolution Structure Of 3-Phosphoshik 4e-14
3tr1_A 441 Structure Of A 3-Phosphoshikimate 1-Carboxyvinyltra 4e-12
1rf4_A 427 Structural Studies Of Streptococcus Pneumoniae Epsp 9e-12
3rmt_A 455 Crystal Structure Of Putative 5-Enolpyruvoylshikima 1e-09
2bjb_A 462 Mycobacterium Tuberculosis Epsp Synthase In Unligan 2e-09
2o0b_A 450 Mycobacterium Tuberculosis Epsp Synthase In Complex 2e-09
2pqd_A 445 A100g Cp4 Epsps Liganded With (R)-Difluoromethyl Te 2e-08
2ggd_A 455 Cp4 Epsp Synthase Ala100gly Liganded With S3p And G 2e-08
2pqb_A 445 Cp4 Epsps Liganded With (R)-Difluoromethyl Tetrahed 1e-07
2gg4_A 455 Cp4 Epsp Synthase (Unliganded) Length = 455 1e-07
>pdb|3NVS|A Chain A, 1.02 Angstrom Resolution Crystal Structure Of 3-Phosphoshikimate 1- Carboxyvinyltransferase From Vibrio Cholerae In Complex With Shikimate-3-Phosphate (Partially Photolyzed) And Glyphosate Length = 450 Back     alignment and structure 
Iteration: 1

 Score =  175 bits (444), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 113/244 (46%), Positives = 142/244 (58%), Gaps = 9/244 (3%)
Query: 74  QSKASE-IVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDA 132
           QS A E + LQPI  ISG V LPGSKS+SNR LLLAAL+ GTT + NLL S+DI HML+A
Sbjct: 21  QSNAMESLTLQPIELISGEVNLPGSKSVSNRALLLAALASGTTRLTNLLDSDDIRHMLNA 80
Query: 133 LKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGN 192
           L KLG+N           VEG G  F      T  +ELFLGNAGTAMRPL AA+    G+
Sbjct: 81  LTKLGVNYRLSADKTTCEVEGLGQAF----HTTQPLELFLGNAGTAMRPLAAALCLGQGD 136
Query: 193 LSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXX 252
             Y+L G PRM+ERPIG LV  L+Q GA ++ +   N PP+RI                 
Sbjct: 137 --YVLTGEPRMKERPIGHLVDALRQAGAQIEYLEQENFPPLRIQ-GTGLQAGTVTIDGSI 193
Query: 253 XXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQG 312
             Q+            G V I+I+ +L+S PY+++TL +ME+FGV V + D +  F I  
Sbjct: 194 SSQFLTAFLMSAPLAQGKVTIKIVGELVSKPYIDITLHIMEQFGVQVINHD-YQEFVIPA 252
Query: 313 GQKY 316
           GQ Y
Sbjct: 253 GQSY 256
>pdb|3TI2|A Chain A, 1.90 Angstrom Resolution Crystal Structure Of N-Terminal Domain 3- Phosphoshikimate 1-Carboxyvinyltransferase From Vibrio Cholerae Length = 228 Back     alignment and structure
>pdb|1G6S|A Chain A, Structure Of Epsp Synthase Liganded With Shikimate-3- Phosphate And Glyphosate Length = 427 Back     alignment and structure
>pdb|1Q36|A Chain A, Epsp Synthase (Asp313ala) Liganded With Tetrahedral Reaction Intermediate Length = 427 Back     alignment and structure
>pdb|1EPS|A Chain A, Structure And Topological Symmetry Of The Glyphosphate 5-enol- Pyruvylshikimate-3-phosphate Synthase: A Distinctive Protein Fold Length = 427 Back     alignment and structure
>pdb|1MI4|A Chain A, Glyphosate Insensitive G96a Mutant Epsp Synthase Liganded With Shikimate-3-Phosphate Length = 427 Back     alignment and structure
>pdb|3FJX|A Chain A, E. Coli Epsp Synthase (T97i) Liganded With S3p Length = 427 Back     alignment and structure
>pdb|2QFS|A Chain A, E.coli Epsp Synthase Pro101ser Liganded With S3p Length = 427 Back     alignment and structure
>pdb|2QFQ|A Chain A, E. Coli Epsp Synthase Pro101leu Liganded With S3p Length = 427 Back     alignment and structure
>pdb|3FK0|A Chain A, E. Coli Epsp Synthase (Tips Mutation) Liganded With S3p Length = 427 Back     alignment and structure
>pdb|1P88|A Chain A, Substrate-Induced Structural Changes To The Isolated N- Terminal Domain Of 5-Enolpyruvylshikimate-3-Phosphate Synthase Length = 216 Back     alignment and structure
>pdb|4GFP|A Chain A, 2.7 Angstrom Resolution Structure Of 3-Phosphoshikimate 1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii In A Second Conformational State Length = 462 Back     alignment and structure
>pdb|3ROI|A Chain A, 2.20 Angstrom Resolution Structure Of 3-Phosphoshikimate 1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii Length = 441 Back     alignment and structure
>pdb|3TR1|A Chain A, Structure Of A 3-Phosphoshikimate 1-Carboxyvinyltransferase (Aroa) From Coxiella Burnetii Length = 441 Back     alignment and structure
>pdb|1RF4|A Chain A, Structural Studies Of Streptococcus Pneumoniae Epsp Synthase, Tetrahedral Intermediate Bound State Length = 427 Back     alignment and structure
>pdb|3RMT|A Chain A, Crystal Structure Of Putative 5-Enolpyruvoylshikimate-3-Phosphate Synthase From Bacillus Halodurans C-125 Length = 455 Back     alignment and structure
>pdb|2BJB|A Chain A, Mycobacterium Tuberculosis Epsp Synthase In Unliganded State Length = 462 Back     alignment and structure
>pdb|2O0B|A Chain A, Mycobacterium Tuberculosis Epsp Synthase In Complex With S3p (Partially Photolyzed) Length = 450 Back     alignment and structure
>pdb|2PQD|A Chain A, A100g Cp4 Epsps Liganded With (R)-Difluoromethyl Tetrahedral Reaction Intermediate Analog Length = 445 Back     alignment and structure
>pdb|2GGD|A Chain A, Cp4 Epsp Synthase Ala100gly Liganded With S3p And Glyphosate Length = 455 Back     alignment and structure
>pdb|2PQB|A Chain A, Cp4 Epsps Liganded With (R)-Difluoromethyl Tetrahedral Intermediate Analog Length = 445 Back     alignment and structure
>pdb|2GG4|A Chain A, Cp4 Epsp Synthase (Unliganded) Length = 455 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query317
3nvs_A 450 3-phosphoshikimate 1-carboxyvinyltransferase; stru 1e-111
2o0b_A 450 3-phosphoshikimate 1-carboxyvinyltransferase; shik 4e-97
3rmt_A 455 3-phosphoshikimate 1-carboxyvinyltransferase 1; st 2e-34
3slh_A 441 3-phosphoshikimate 1-carboxyvinyltransferase; stru 3e-29
1rf6_A 427 5-enolpyruvylshikimate-3-phosphate synthase; shiki 6e-29
2pqc_A 445 3-phosphoshikimate 1-carboxyvinyltransferase; insi 2e-28
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
4fqd_A 479 NIKO protein; beta/alpha inverse barrel, enolpyruv 2e-05
>3nvs_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P SKM GPJ EPE; 1.02A {Vibrio cholerae} PDB: 1g6s_A* 1g6t_A* 1x8r_A* 1x8t_A* 2aa9_A* 2aay_A* 2pq9_A* 1eps_A 1mi4_A* 3fjz_A* 3fjx_A* 2qfs_A* 2qft_A* 2qfq_A* 2qfu_A* 3fk0_A* 3fk1_A* 1q36_A* 3ti2_A* 1p88_A ... Length = 450 Back     alignment and structure
 Score =  329 bits (845), Expect = e-111
 Identities = 125/248 (50%), Positives = 159/248 (64%), Gaps = 8/248 (3%)

Query: 70  TAEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHM 129
              + +    + LQPI  ISG V LPGSKS+SNR LLLAAL+ GTT + NLL S+DI HM
Sbjct: 18  LYFQSNAMESLTLQPIELISGEVNLPGSKSVSNRALLLAALASGTTRLTNLLDSDDIRHM 77

Query: 130 LDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAA 189
           L+AL KLG+N           VEG G  F         +ELFLGNAGTAMRPL AA+   
Sbjct: 78  LNALTKLGVNYRLSADKTTCEVEGLGQAFHTT----QPLELFLGNAGTAMRPLAAALCLG 133

Query: 190 GGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLS 249
            G+  Y+L G PRM+ERPIG LV  L+Q GA ++ +   N PP+RI G  GL  G V + 
Sbjct: 134 QGD--YVLTGEPRMKERPIGHLVDALRQAGAQIEYLEQENFPPLRIQGT-GLQAGTVTID 190

Query: 250 GKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFF 309
           G +SSQ+LTA LM+APLA G V I+I+ +L+S PY+++TL +ME+FGV V + D +  F 
Sbjct: 191 GSISSQFLTAFLMSAPLAQGKVTIKIVGELVSKPYIDITLHIMEQFGVQVINHD-YQEFV 249

Query: 310 IQGGQKYK 317
           I  GQ Y 
Sbjct: 250 IPAGQSYV 257
>2o0b_A 3-phosphoshikimate 1-carboxyvinyltransferase; shikimate pathway, EPSP synthase, structural genomics; HET: S3P; 1.15A {Mycobacterium tuberculosis} PDB: 2o0d_A* 2o0e_A* 2o0x_A* 2o0z_A* 2o15_A 2bjb_A Length = 450 Back     alignment and structure
>3rmt_A 3-phosphoshikimate 1-carboxyvinyltransferase 1; structural genomics, protein structure initiative; 2.80A {Bacillus halodurans} Length = 455 Back     alignment and structure
>3slh_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P GPJ SKM PGE 1PE PG4; 1.70A {Coxiella burnetii} PDB: 3roi_A* 4egr_A* 3tr1_A Length = 441 Back     alignment and structure
>1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway, EPSP synthase, glyphosate, PEP, transferase; HET: GPJ S3P; 1.90A {Streptococcus pneumoniae} SCOP: d.68.2.2 PDB: 1rf5_A 1rf4_A* Length = 427 Back     alignment and structure
>2pqc_A 3-phosphoshikimate 1-carboxyvinyltransferase; inside-OUT alpha/beta barrel; HET: RC1; 1.60A {Agrobacterium SP} PDB: 2pqb_A* 2gg6_A* 2gg4_A* 2gga_A* 2ggd_A* 2pqd_A* Length = 445 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>4fqd_A NIKO protein; beta/alpha inverse barrel, enolpyruvyl transferase, fosfomyc binding, transferase; 2.50A {Streptomyces tendae} Length = 479 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query317
3nvs_A 450 3-phosphoshikimate 1-carboxyvinyltransferase; stru 100.0
3rmt_A 455 3-phosphoshikimate 1-carboxyvinyltransferase 1; st 100.0
3slh_A 441 3-phosphoshikimate 1-carboxyvinyltransferase; stru 100.0
2pqc_A 445 3-phosphoshikimate 1-carboxyvinyltransferase; insi 100.0
1rf6_A 427 5-enolpyruvylshikimate-3-phosphate synthase; shiki 100.0
2o0b_A 450 3-phosphoshikimate 1-carboxyvinyltransferase; shik 100.0
2yvw_A 425 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; 100.0
4fqd_A 479 NIKO protein; beta/alpha inverse barrel, enolpyruv 100.0
3r38_A 454 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; 100.0
1ejd_A 419 MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltran 100.0
3nvs_A450 3-phosphoshikimate 1-carboxyvinyltransferase; stru 99.93
2o0b_A450 3-phosphoshikimate 1-carboxyvinyltransferase; shik 99.93
2yvw_A425 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; 99.91
4fqd_A479 NIKO protein; beta/alpha inverse barrel, enolpyruv 99.91
3rmt_A455 3-phosphoshikimate 1-carboxyvinyltransferase 1; st 99.91
3r38_A454 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; 99.89
3slh_A441 3-phosphoshikimate 1-carboxyvinyltransferase; stru 99.88
2pqc_A445 3-phosphoshikimate 1-carboxyvinyltransferase; insi 99.88
1rf6_A427 5-enolpyruvylshikimate-3-phosphate synthase; shiki 99.87
1ejd_A419 MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltran 99.85
3tut_A 358 RNA 3'-terminal phosphate cyclase; cyclase family, 96.12
3tut_A358 RNA 3'-terminal phosphate cyclase; cyclase family, 95.93
3pqv_A 365 RCL1 protein; RTC-like, cyclase-like, modular, alp 94.67
3pqv_A 365 RCL1 protein; RTC-like, cyclase-like, modular, alp 93.87
>3nvs_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P SKM GPJ EPE; 1.02A {Vibrio cholerae} PDB: 1g6s_A* 1g6t_A* 1x8r_A* 1x8t_A* 2aa9_A* 2aay_A* 2pq9_A* 1eps_A 1mi4_A* 3fjz_A* 3fjx_A* 2qfs_A* 2qft_A* 2qfq_A* 2qfu_A* 3fk0_A* 3fk1_A* 1q36_A* 3ti2_A* 1p88_A ... Back     alignment and structure
Probab=100.00  E-value=5.6e-40  Score=322.72  Aligned_cols=233  Identities=54%  Similarity=0.855  Sum_probs=206.3

Q ss_pred             CceeEEEcCCCceeeEEEecCCHHHHHHHHHHHhhcCCcEEEeeCCCChhHHHHHHHHHHcCCEEEEcCCccEEEEEcCC
Q 021126           76 KASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCG  155 (317)
Q Consensus        76 ~~~~i~I~~~~~l~G~v~ipgskS~a~r~LlaAaLa~g~t~I~n~~~s~dv~~~l~~L~~lGa~I~~~~~~~~l~V~g~~  155 (317)
                      .|+.++|+|+++++|+|++|||||+++|+|++|+|++|+++|+|++.++|+..|+++|++||++|+++++...++|+|.+
T Consensus        24 ~m~~~~i~~~~~l~G~v~vpgsKs~s~r~l~~aaLa~g~s~i~n~~~~~D~~~~~~~L~~lG~~i~~~~~~~~~~i~g~~  103 (450)
T 3nvs_A           24 AMESLTLQPIELISGEVNLPGSKSVSNRALLLAALASGTTRLTNLLDSDDIRHMLNALTKLGVNYRLSADKTTCEVEGLG  103 (450)
T ss_dssp             -CCEEEECCCCCBCEEEECCBCHHHHHHHHHHHHHSBSEEEEESCCCSHHHHHHHHHHHHTTCEEEECTTSSCEEEECCS
T ss_pred             ccceEEEcCCCcceEEEEeCCcHHHHHHHHHHHHHcCCCEEEcCCCccHHHHHHHHHHHHcCCeEEEcCCccEEEEeCCC
Confidence            37889999998999999999999999999999999999999999999999999999999999999987641159999976


Q ss_pred             CCcccccccCCceEEEecCchhhHHHHHHHHHHcCCCcEEEEeCCCCCCCCchHHHHHHHHhCCCeEEEeCCCCcccEEE
Q 021126          156 GLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRI  235 (317)
Q Consensus       156 ~~~~~~~~~~~~~~i~~g~sgta~r~l~a~la~~~~~~~~~i~G~~~l~~rpi~~l~~~L~~lGa~i~~~~~~~~~Pi~I  235 (317)
                      +.+..+    ....+|+|||||++||++++++.  +++++.++|+++++.||++.+++.|++|||+|++.++++++|++|
T Consensus       104 ~~~~~~----~~~~l~~g~sgt~~R~l~~~la~--~~~~~~l~G~~~l~~RPi~~~l~~L~~lGa~i~~~~~~g~~p~~I  177 (450)
T 3nvs_A          104 QAFHTT----QPLELFLGNAGTAMRPLAAALCL--GQGDYVLTGEPRMKERPIGHLVDALRQAGAQIEYLEQENFPPLRI  177 (450)
T ss_dssp             SCCBCS----SCEEEECTTCHHHHHHHHHHTTS--SBCEEEEECSGGGGGSCCHHHHHHHHHTTCEEEESSSTTSSCEEE
T ss_pred             CCcCCC----CCceEEccCccchHHHHHHHHhc--CCcEEEEeCCcccccCCHHHHHHHHHHCCCEEEEEcCCCeEeEEE
Confidence            333322    02368999999999999998653  578999999999999999999999999999999865557899999


Q ss_pred             EcCCCCCceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEcccccccchHHHHHHHHHHcCCEEEEeCCcceEEEecCCC
Q 021126          236 NGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQK  315 (317)
Q Consensus       236 ~g~~~l~g~~i~l~g~~ssq~~saLllaA~~a~G~~~I~~~~~~~s~~yv~~t~~~L~~lG~~v~~~~d~~~i~I~G~~~  315 (317)
                      +|+ +++|+++.++++.|+|++++|++||++++|+++|++.++..++||+++|+++|++||++|+..+. +.|+|+|+++
T Consensus       178 ~g~-~l~gg~i~i~g~~sSq~~s~lLlAa~la~g~t~I~~~~~~~s~p~i~~t~~~L~~~Ga~i~~~g~-~~i~I~g~~~  255 (450)
T 3nvs_A          178 QGT-GLQAGTVTIDGSISSQFLTAFLMSAPLAQGKVTIKIVGELVSKPYIDITLHIMEQFGVQVINHDY-QEFVIPAGQS  255 (450)
T ss_dssp             ECC-CCCSEEEEECCSSCTHHHHHHHHHGGGSSSCEEEEESSCCSSHHHHHHHHHHHHHTTCCCEEETT-TEEEECTTCC
T ss_pred             EcC-CcCceEEEeCCCCcHHHHHHHHHHHHHCCCcEEEEeCCCcCCchHHHHHHHHHHHCCCCEEecCC-cEEEEcCCcc
Confidence            997 79999999999889999999999999999999999876667889999999999999999998763 5899999876


Q ss_pred             C
Q 021126          316 Y  316 (317)
Q Consensus       316 ~  316 (317)
                      |
T Consensus       256 l  256 (450)
T 3nvs_A          256 Y  256 (450)
T ss_dssp             C
T ss_pred             c
Confidence            5
>3rmt_A 3-phosphoshikimate 1-carboxyvinyltransferase 1; structural genomics, protein structure initiative; 2.80A {Bacillus halodurans} Back     alignment and structure
>3slh_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P GPJ SKM PGE 1PE PG4; 1.70A {Coxiella burnetii} PDB: 3roi_A* 4egr_A* 4gfp_A 3tr1_A Back     alignment and structure
>2pqc_A 3-phosphoshikimate 1-carboxyvinyltransferase; inside-OUT alpha/beta barrel; HET: RC1; 1.60A {Agrobacterium SP} PDB: 2pqb_A* 2gg6_A* 2gg4_A* 2gga_A* 2ggd_A* 2pqd_A* Back     alignment and structure
>1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway, EPSP synthase, glyphosate, PEP, transferase; HET: GPJ S3P; 1.90A {Streptococcus pneumoniae} SCOP: d.68.2.2 PDB: 1rf5_A 1rf4_A* Back     alignment and structure
>2o0b_A 3-phosphoshikimate 1-carboxyvinyltransferase; shikimate pathway, EPSP synthase, structural genomics; HET: S3P; 1.15A {Mycobacterium tuberculosis} PDB: 2o0d_A* 2o0e_A* 2o0x_A* 2o0z_A* 2o15_A 2bjb_A Back     alignment and structure
>2yvw_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; peptidoglycan, structu genomics, NPPSFA; HET: EPU; 1.81A {Aquifex aeolicus} PDB: 3swg_A* Back     alignment and structure
>4fqd_A NIKO protein; beta/alpha inverse barrel, enolpyruvyl transferase, fosfomyc binding, transferase; 2.50A {Streptomyces tendae} Back     alignment and structure
>3r38_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; biosynthesis and degradation of murein sacculus and peptidog infectious diseases; 2.23A {Listeria monocytogenes} PDB: 3sg1_A* Back     alignment and structure
>1ejd_A MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltransferase; inside-OUT alpha/beta barrel; 1.55A {Enterobacter cloacae} SCOP: d.68.2.2 PDB: 1ejc_A 1eyn_A* 1ybg_A* 3kqa_A* 3lth_A* 3spb_A 3swq_A* 3upk_A* 1naw_A 1dlg_A 1ryw_A* 1q3g_A* 3su9_A* 3swi_A* 3v4t_A* 3v5v_A* 3swa_A* 1uae_A* 3kqj_A* 3kr6_A* ... Back     alignment and structure
>3nvs_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P SKM GPJ EPE; 1.02A {Vibrio cholerae} PDB: 1g6s_A* 1g6t_A* 1x8r_A* 1x8t_A* 2aa9_A* 2aay_A* 2pq9_A* 1eps_A 1mi4_A* 3fjz_A* 3fjx_A* 2qfs_A* 2qft_A* 2qfq_A* 2qfu_A* 3fk0_A* 3fk1_A* 1q36_A* 3ti2_A* 1p88_A ... Back     alignment and structure
>2o0b_A 3-phosphoshikimate 1-carboxyvinyltransferase; shikimate pathway, EPSP synthase, structural genomics; HET: S3P; 1.15A {Mycobacterium tuberculosis} PDB: 2o0d_A* 2o0e_A* 2o0x_A* 2o0z_A* 2o15_A 2bjb_A Back     alignment and structure
>2yvw_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; peptidoglycan, structu genomics, NPPSFA; HET: EPU; 1.81A {Aquifex aeolicus} PDB: 3swg_A* Back     alignment and structure
>4fqd_A NIKO protein; beta/alpha inverse barrel, enolpyruvyl transferase, fosfomyc binding, transferase; 2.50A {Streptomyces tendae} Back     alignment and structure
>3rmt_A 3-phosphoshikimate 1-carboxyvinyltransferase 1; structural genomics, protein structure initiative; 2.80A {Bacillus halodurans} Back     alignment and structure
>3r38_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; biosynthesis and degradation of murein sacculus and peptidog infectious diseases; 2.23A {Listeria monocytogenes} PDB: 3sg1_A* Back     alignment and structure
>3slh_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P GPJ SKM PGE 1PE PG4; 1.70A {Coxiella burnetii} PDB: 3roi_A* 4egr_A* 4gfp_A 3tr1_A Back     alignment and structure
>2pqc_A 3-phosphoshikimate 1-carboxyvinyltransferase; inside-OUT alpha/beta barrel; HET: RC1; 1.60A {Agrobacterium SP} PDB: 2pqb_A* 2gg6_A* 2gg4_A* 2gga_A* 2ggd_A* 2pqd_A* Back     alignment and structure
>1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway, EPSP synthase, glyphosate, PEP, transferase; HET: GPJ S3P; 1.90A {Streptococcus pneumoniae} SCOP: d.68.2.2 PDB: 1rf5_A 1rf4_A* Back     alignment and structure
>1ejd_A MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltransferase; inside-OUT alpha/beta barrel; 1.55A {Enterobacter cloacae} SCOP: d.68.2.2 PDB: 1ejc_A 1eyn_A* 1ybg_A* 3kqa_A* 3lth_A* 3spb_A 3swq_A* 3upk_A* 1naw_A 1dlg_A 1ryw_A* 1q3g_A* 3su9_A* 3swi_A* 3v4t_A* 3v5v_A* 3swa_A* 1uae_A* 3kqj_A* 3kr6_A* ... Back     alignment and structure
>3tut_A RNA 3'-terminal phosphate cyclase; cyclase family, cyclization of RNA 3'-phosphate ENDS, transf; HET: ATP; 1.58A {Escherichia coli} PDB: 3tux_A* 3tv1_A* 3tw3_A* 3kgd_A* 1qmh_A* 1qmi_A Back     alignment and structure
>3tut_A RNA 3'-terminal phosphate cyclase; cyclase family, cyclization of RNA 3'-phosphate ENDS, transf; HET: ATP; 1.58A {Escherichia coli} PDB: 3tux_A* 3tv1_A* 3tw3_A* 3kgd_A* 1qmh_A* 1qmi_A Back     alignment and structure
>3pqv_A RCL1 protein; RTC-like, cyclase-like, modular, alpha-beta, anion pocket, R biogenesis, unknown function; HET: TAR; 2.61A {Kluyveromyces lactis} Back     alignment and structure
>3pqv_A RCL1 protein; RTC-like, cyclase-like, modular, alpha-beta, anion pocket, R biogenesis, unknown function; HET: TAR; 2.61A {Kluyveromyces lactis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 317
d1g6sa_ 427 d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate 1e-40
d1p88a_216 d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate 2e-34
d1rf6a_ 427 d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate 6e-34
d1ejda_ 419 d.68.2.2 (A:) UDP-N-acetylglucosamine enolpyruvyl 9e-29
>d1g6sa_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Escherichia coli [TaxId: 562]} Length = 427 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: EPT/RTPC-like
family: Enolpyruvate transferase, EPT
domain: 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase
species: Escherichia coli [TaxId: 562]

 Score =  144 bits (364), Expect = 1e-40
 Identities = 99/238 (41%), Positives = 137/238 (57%), Gaps = 9/238 (3%)

Query: 80  IVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLN 139
           + LQPI  + GT+ LPGSKS+SNR LLLAAL+ G TV+ NLL S+D+ HML+AL  LG++
Sbjct: 4   LTLQPIARVDGTINLPGSKSVSNRALLLAALAHGKTVLTNLLDSDDVRHMLNALTALGVS 63

Query: 140 VEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDG 199
                   R  + G GG           +             L        G+   +L G
Sbjct: 64  YTLSADRTRCEIIGNGGPLHAEGALELFLGNAGTAMRPLAAALC------LGSNDIVLTG 117

Query: 200 VPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTA 259
            PRM+ERPIG LV  L+  GA +  +   N PP+R+  +GG  GG V + G +SSQ+LTA
Sbjct: 118 EPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRL--QGGFTGGNVDVDGSVSSQFLTA 175

Query: 260 LLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYK 317
           LLM APLA  +  I I   L+S PY+++TL LM+ FGV +E+   + +F ++GGQ Y+
Sbjct: 176 LLMTAPLAPEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIEN-QHYQQFVVKGGQSYQ 232
>d1p88a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Escherichia coli [TaxId: 562]} Length = 216 Back     information, alignment and structure
>d1rf6a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Streptococcus pneumoniae [TaxId: 1313]} Length = 427 Back     information, alignment and structure
>d1ejda_ d.68.2.2 (A:) UDP-N-acetylglucosamine enolpyruvyl transferase (EPT, MurA, MurZ) {Enterobacter cloacae [TaxId: 550]} Length = 419 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query317
d1g6sa_ 427 5-enol-pyruvyl shikimate-3-phosphate (EPSP) syntha 100.0
d1rf6a_ 427 5-enol-pyruvyl shikimate-3-phosphate (EPSP) syntha 100.0
d1ejda_ 419 UDP-N-acetylglucosamine enolpyruvyl transferase (E 100.0
d1p88a_216 5-enol-pyruvyl shikimate-3-phosphate (EPSP) syntha 99.97
d1g6sa_427 5-enol-pyruvyl shikimate-3-phosphate (EPSP) syntha 99.87
d1rf6a_427 5-enol-pyruvyl shikimate-3-phosphate (EPSP) syntha 99.8
d1ejda_419 UDP-N-acetylglucosamine enolpyruvyl transferase (E 99.79
d1p88a_216 5-enol-pyruvyl shikimate-3-phosphate (EPSP) syntha 98.16
d1qmha2239 RNA 3'-terminal phosphate cyclase, RPTC {Escherich 96.38
d1qmha2239 RNA 3'-terminal phosphate cyclase, RPTC {Escherich 96.11
>d1g6sa_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: EPT/RTPC-like
family: Enolpyruvate transferase, EPT
domain: 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2e-38  Score=307.05  Aligned_cols=230  Identities=50%  Similarity=0.823  Sum_probs=204.1

Q ss_pred             ceeEEEcCCCceeeEEEecCCHHHHHHHHHHHhhcCCcEEEeeCCCChhHHHHHHHHHHcCCEEEEcCCccEEEEEcCCC
Q 021126           77 ASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGG  156 (317)
Q Consensus        77 ~~~i~I~~~~~l~G~v~ipgskS~a~r~LlaAaLa~g~t~I~n~~~s~dv~~~l~~L~~lGa~I~~~~~~~~l~V~g~~~  156 (317)
                      |+.++|+|.++++|+|++|||||.++|+|++|+|++|+++|+|++.++||..|+++|++||++|+++++...+++.|.+.
T Consensus         1 M~~l~i~p~~~l~G~i~~pgsKs~s~R~l~~aaLa~g~s~i~n~~~~~Dv~~~~~~L~~LG~~i~~~~~~~~i~i~g~g~   80 (427)
T d1g6sa_           1 MESLTLQPIARVDGTINLPGSKSVSNRALLLAALAHGKTVLTNLLDSDDVRHMLNALTALGVSYTLSADRTRCEIIGNGG   80 (427)
T ss_dssp             CCEEEECCCCEEEEEEECCBCHHHHHHHHHHHHHSBSEEEEESCCCSHHHHHHHHHHHHTTCEEEECTTSCCEEEECCSS
T ss_pred             CCcEEEcCCCeeEEEEEcCCcHHHHHHHHHHHHHcCCCEEEccCCccHHHHHHHHHHHHcCCEEEEeCCceEEEEEeCCC
Confidence            67899999999999999999999999999999999999999999999999999999999999999976556788888764


Q ss_pred             CcccccccCCceEEEecCchhhHHHHHHHHHHcCCCcEEEEeCCCCCCCCchHHHHHHHHhCCCeEEEeCCCCcccEEEE
Q 021126          157 LFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRIN  236 (317)
Q Consensus       157 ~~~~~~~~~~~~~i~~g~sgta~r~l~a~la~~~~~~~~~i~G~~~l~~rpi~~l~~~L~~lGa~i~~~~~~~~~Pi~I~  236 (317)
                      ....+    ....++++++++++|+++++++.  ++..+.++|+++|+.||++++++.|++|||+|+..++.+++|+++.
T Consensus        81 ~~~~~----~~~~i~~g~sgt~~r~l~~l~~~--~~~~v~l~G~~sL~~Rp~~~~~~~L~~lGa~i~~~~~~~~~p~~i~  154 (427)
T d1g6sa_          81 PLHAE----GALELFLGNAGTAMRPLAAALCL--GSNDIVLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRLQ  154 (427)
T ss_dssp             CCCCC----TTEEEECTTCHHHHHHHHHHTTS--SEEEEEEECCGGGGGSCCHHHHHHHHHTTCCEEESSSTTSSCEEEE
T ss_pred             ccccc----ccceeeccccchheeeeeeeecc--cceEEeccccchhccchhhhHHHHHHhcCCEEEEeecccceeEEec
Confidence            33221    14679999999999999887653  6789999999999999999999999999999998765578899999


Q ss_pred             cCCCCCceEEEeCCCCCHHHHHHHHHHHhcCCCeEEEEEcccccccchHHHHHHHHHHcCCEEEEeCCcceEEEecCCC
Q 021126          237 GKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQK  315 (317)
Q Consensus       237 g~~~l~g~~i~l~g~~ssq~~saLllaA~~a~G~~~I~~~~~~~s~~yv~~t~~~L~~lG~~v~~~~d~~~i~I~G~~~  315 (317)
                      |  ++.+..+++++..|+|++++++|+|+++.|+++|+..++..++||+++|+++|++||++++..++ +.+.+.|+++
T Consensus       155 g--~~~~~~i~~~~~~Ssq~~s~lllaA~~~~~~~~i~~~~~~~S~p~v~~t~~~l~~~G~~i~~~~~-~~~~~~~~~~  230 (427)
T d1g6sa_         155 G--GFTGGNVDVDGSVSSQFLTALLMTAPLAPEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIENQHY-QQFVVKGGQS  230 (427)
T ss_dssp             E--CCCCEEEEEEESSCTHHHHHHHHHGGGSSSCEEEEEEEEECSTHHHHHHHHHHHHTTCCCEEETT-TEEEECSSCC
T ss_pred             C--CCcceeEEECCccCcHHHHHHHHHHHhccCCcEEEeccccccCchhhhchhhhcccccccccccc-ccccccCccc
Confidence            8  48999999987789999999999999999999998766677999999999999999999998875 6778887654
>d1rf6a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1ejda_ d.68.2.2 (A:) UDP-N-acetylglucosamine enolpyruvyl transferase (EPT, MurA, MurZ) {Enterobacter cloacae [TaxId: 550]} Back     information, alignment and structure
>d1p88a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1g6sa_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rf6a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1ejda_ d.68.2.2 (A:) UDP-N-acetylglucosamine enolpyruvyl transferase (EPT, MurA, MurZ) {Enterobacter cloacae [TaxId: 550]} Back     information, alignment and structure
>d1p88a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qmha2 d.68.2.1 (A:5-184,A:280-338) RNA 3'-terminal phosphate cyclase, RPTC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qmha2 d.68.2.1 (A:5-184,A:280-338) RNA 3'-terminal phosphate cyclase, RPTC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure