Citrus Sinensis ID: 021156

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310------
Protein Sequence
MASVQGLISPARTRSLQPTSVSDLFWLHKNNNSSFYAPSSSLSRPSRLSVRCAVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQQEALTVQ
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccEEEEEEccccccccccccccHHHHcccccHHHHHHHHHHHcccccEEEEccccccHHHHHHHHHHHcccccEEccccccHHHHHHHHHcccEEEEEcEEEccccccHHHHHHHHHHHccccEEEEEEcccccccEEEEEccccccccccHHHHHHHHHHccccEEEEEccccccccccccHHHHHHHHccccccEEEEcccccHHHHHHHHHHccccEEEEEEEEcccccccccHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccEccccccccccccccccccccEEEEccccccEEEcccccccccccEEEEEEEEEEEEEcccccEEEEEEcEccccccccccccccccccccHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHccccEEEcccccHHHHHHHHHccccEEEEEEEEcccccccHHHHHHHHHHHcccEEEEEEccEcccccEEEEEcccEEEccccccHHHHHHHHHHccHEEEEcccHHcHcccccHHHHHHHHHHccccEEEEcccccHHHHHHHHHHccccEEEEEccHHHHccccccHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
masvqglispartrslqptsvsdlfwlhknnnssfyapssslsrpsrlsvrcavrfrpcidihkgkVKQIVGstlqdskddgtKLVTNFESDKSAAEFANLYkedgltgghaimlgadpLSKAAAIEALHaypgglqvggginsdnslsyieEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDlscrkkdgkyaIVTDRWQKFSDVYLDERVLDFLASYADEFLVhgvdvegkklgiDDELVALLgkyspipvtyaggvttmaDLEKIKVAGIGRVDVTVGsaldifggnlayKDVVAWHAQQEALTVQ
Flexible Loop (DISEMBL)
masvqglispartrslqptSVSDLFWLHKNNNSSfyapssslsrpsRLSVRCAVRFrpcidihkgkvkqivgstlqdskddgTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKqrlvldlscrkkdgkyaivtdrwqkfsdVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQQEALTVQ
Low Complexity Region (SEG)
MASVQGLISPARTRSLQPTSVSDLFWLHKNNNSSFYApssslsrpsrlsVRCAVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQQEALTVQ
Disordered region (IsUnstruct)
**********************DLFWLHK******************LSVRCAVRFRPCIDIHKGKVKQIVGST*********************AEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQ*******
Disordered Region (DISOPRED)
**************************LHKNNN******************RCAVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQQ******
Disordered Region (DISEMBL)
MASVQGLISPARTRSLQPTSVSDLFWLHKNNNSSF*************SVRCAVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQQEALTVQ
Disordered Region (DISPRO)
************TRSLQPTSVSDLFWLHKNNNSSFYAPSSSLSRPSRLSVRCAVRFRPCIDIHKGKVKQIVGSTLQDS*DDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQQEA****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASVQGLISPARTRSLQPTSVSDLFWLHKNNNSSFYAPSSSLSRPSRLSVRCAVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQQEALTVQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	316	2.2.26 [Sep-21-2011]
O82782	304	1-(5-phosphoribosyl)-5-[(	yes	no	0.955	0.993	0.764	1e-134
Q10184	264	1-(5-phosphoribosyl)-5-[(	yes	no	0.806	0.965	0.486	2e-66
Q6C2U0	264	1-(5-phosphoribosyl)-5-[(	yes	no	0.794	0.950	0.471	1e-61
Q7RXQ8	257	1-(5-phosphoribosyl)-5-[(	N/A	no	0.797	0.980	0.455	5e-60
Q75AP1	263	1-(5-phosphoribosyl)-5-[(	yes	no	0.797	0.958	0.475	1e-56
Q9HFV5	279	1-(5-phosphoribosyl)-5-[(	N/A	no	0.803	0.910	0.405	3e-53
Q6CQL7	267	1-(5-phosphoribosyl)-5-[(	yes	no	0.800	0.947	0.437	4e-53
Q6BUV9	276	1-(5-phosphoribosyl)-5-[(	yes	no	0.797	0.913	0.423	3e-52
P40545	261	1-(5-phosphoribosyl)-5-[(	yes	no	0.797	0.965	0.435	8e-51
Q6FPN5	261	1-(5-phosphoribosyl)-5-[(	yes	no	0.794	0.961	0.422	1e-46

>sp|O82782|HIS4_ARATH 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic OS=Arabidopsis thaliana GN=HIS6 PE=2 SV=1

 Score =  478 bits (1231), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 231/302 (76%), Positives = 261/302 (86%)

Query: 12  RTRSLQPTSVSDLFWLHKNNNSSFYAPSSSLSRPSRLSVRCAVRFRPCIDIHKGKVKQIV 71
           RT S Q  S   L W  K N SS +     +S+PSR+ +  AV+FRPCIDIHKGKVKQIV
Sbjct: 2   RTLSSQLYSNGGLTWFQKKNQSSLFIKHLRVSKPSRVQLISAVQFRPCIDIHKGKVKQIV 61

Query: 72  GSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHA 131
           GSTL+D K+DG+ LVTNFESDKSA E+A +YKEDGLTGGH IMLGADPLS+AAAI ALHA
Sbjct: 62  GSTLRDLKEDGSVLVTNFESDKSAEEYAKMYKEDGLTGGHVIMLGADPLSQAAAIGALHA 121

Query: 132 YPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDL 191
           YPGGLQVGGGINS+N +SYIEEGA+HVIVTSYVFNNG++DLERLKD+V +VGKQRL+LDL
Sbjct: 122 YPGGLQVGGGINSENCMSYIEEGASHVIVTSYVFNNGKIDLERLKDIVSIVGKQRLILDL 181

Query: 192 SCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVAL 251
           SCRKKDG+YAIVTDRWQKFSDV LDE+ L+FL  ++DEFLVHGVDVEGKKLGID+ELVAL
Sbjct: 182 SCRKKDGRYAIVTDRWQKFSDVILDEKSLEFLGGFSDEFLVHGVDVEGKKLGIDEELVAL 241

Query: 252 LGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQQE 311
           LG YSPIPVTYAGGVT M D+E+IK AG GRVDVTVGSALDIFGGNL YKDVVAWH +Q 
Sbjct: 242 LGNYSPIPVTYAGGVTVMDDVERIKDAGKGRVDVTVGSALDIFGGNLPYKDVVAWHHKQH 301

Query: 312 AL 313
           +L
Sbjct: 302 SL 303

Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 3EC: .EC: 1EC: .EC: 1EC: 6

>sp|Q10184|HIS4_SCHPO 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3F10.09 PE=3 SV=1

 Score =  252 bits (644), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 127/261 (48%), Positives = 177/261 (67%), Gaps = 6/261 (2%)

Query: 56  FRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIML 115
           FRPCIDIH+G+VKQIVG TL +  D    + TN+ S K ++ +A LYK + L G H IML
Sbjct: 9   FRPCIDIHQGQVKQIVGGTLGNDAD----VKTNYVSLKPSSYYAELYKLNHLEGAHVIML 64

Query: 116 GADPLSKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERL 175
           G  P  + AA  ALH +PG LQ+GGGIN  N+ ++++EGA+ VIVTS++F + Q DL+RL
Sbjct: 65  G--PNCEEAAKTALHTWPGALQIGGGINISNAQNWLQEGASKVIVTSWLFPDAQFDLDRL 122

Query: 176 KDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGV 235
           K +   +GK RLV+D+SCR+KD ++    ++WQ  +   L+E  LD L+ Y  EFL+H  
Sbjct: 123 KAISSKIGKDRLVVDVSCRRKDNRWFAAINKWQVMTAFELNEENLDLLSQYCSEFLIHAA 182

Query: 236 DVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFG 295
           DVEG   GID++LV  LG++  IP TYAGG  ++ DL+ +     G+VD+T+GSALDIFG
Sbjct: 183 DVEGLCKGIDEDLVIKLGEWVKIPTTYAGGGRSIEDLDLVDKLSKGKVDLTIGSALDIFG 242

Query: 296 GNLAYKDVVAWHAQQEALTVQ 316
           G L +  VVAW+ +   L +Q
Sbjct: 243 GVLEFTRVVAWNRRFTPLPLQ 263

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q6C2U0|HIS4_YARLI 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=HIS6 PE=3 SV=1

 Score =  236 bits (603), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 125/265 (47%), Positives = 175/265 (66%), Gaps = 14/265 (5%)

Query: 54  VRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAI 113
            +FR CIDIH G+VKQIVG TL DS  D   L TNF + +    FA LYK++ + G H I
Sbjct: 2   TKFRGCIDIHSGQVKQIVGGTLTDSDAD---LKTNFVATQPPGYFAQLYKDNNVVGTHVI 58

Query: 114 MLGADPLSKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLE 173
            LG  P    AA EAL  +P  LQ+GGGIN DN+  +I+ GA+HVIVTS++F + ++D++
Sbjct: 59  KLG--PGCDEAAEEALAGWPDHLQIGGGINHDNAEKWIKLGASHVIVTSFLFPDAKLDMK 116

Query: 174 RLKDLVRVV----GKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADE 229
           RL DL  ++    GK+R+V+DLSCR+KDGK+ +  +RWQ  +D  +++  L+ LA + DE
Sbjct: 117 RLTDLEAILEPYGGKKRIVVDLSCRRKDGKWVVAMNRWQTLTDTEVNKETLEQLAKHCDE 176

Query: 230 FLVHGVDVEGKKLGIDDELVALLGKYSP----IPVTYAGGVTTMADLEKIKVAGIGRVDV 285
           FL+H  DVEG   GID+ELV  LG++       PVTYAGG   + DL  ++    G+VD+
Sbjct: 177 FLIHAADVEGLCNGIDEELVTKLGEWLEEGHLPPVTYAGGAKNIDDLALVQKLSHGKVDL 236

Query: 286 TVGSALDIFGGN-LAYKDVVAWHAQ 309
           T GSALD+FGG+ + + D V W+ +
Sbjct: 237 TYGSALDVFGGDKVKFSDCVEWNEK 261

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q7RXQ8|HIS4_NEUCR 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=his-6 PE=3 SV=1

 Score =  231 bits (589), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 119/261 (45%), Positives = 170/261 (65%), Gaps = 9/261 (3%)

Query: 54  VRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAI 113
            RFRPCID+H G+VKQIVG TL  +    ++L TNF S    A FA LY+++ L+G H I
Sbjct: 2   TRFRPCIDLHAGQVKQIVGGTLDSAT---SELRTNFVSPHPPAYFAKLYRDNDLSGAHVI 58

Query: 114 MLGADPLSKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLE 173
           MLG  P +K AA+E+L A+PGGLQVGGGI   N+  ++E GA  VI+TSY+F NG+    
Sbjct: 59  MLG--PGNKEAALESLKAWPGGLQVGGGITDANAREWVEAGAEKVIITSYLFPNGKFSQS 116

Query: 174 RLKDLVRVVG--KQRLVLDLSCRKK-DGKYAIVTDRWQKFSDVYLDERVLDFLASYADEF 230
            L  ++  +   K +LV+DLSCR++ D ++ +  ++WQ  +D+ + E  +  L  Y  EF
Sbjct: 117 HLDAVLAALDGDKSKLVIDLSCRRQGDDRWFVAMNKWQTITDMEVSEESIKALEPYCSEF 176

Query: 231 LVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSA 290
           L+H  D EG + GID++LV  L ++  IPVTYAGG   + DLE +K    G+VD+T+GSA
Sbjct: 177 LIHAADNEGLQKGIDEKLVQRLSEWCSIPVTYAGGGRNLEDLETVKRLSGGKVDLTIGSA 236

Query: 291 LDIFGGN-LAYKDVVAWHAQQ 310
           LD FGG  +  ++ V W+ +Q
Sbjct: 237 LDCFGGKGVTLQECVEWNRRQ 257

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q75AP1|HIS4_ASHGO 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=HIS6 PE=3 SV=1

 Score =  220 bits (560), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 126/265 (47%), Positives = 171/265 (64%), Gaps = 13/265 (4%)

Query: 55  RFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIM 114
           RF  CID+H GKVKQIVG TL  SK DG   VTNF SDKS + +A+LY  + + G H I 
Sbjct: 3   RFVGCIDLHDGKVKQIVGGTL-SSKPDGEAPVTNFVSDKSPSHYAHLYASNDVQGSHVIR 61

Query: 115 LGADPLSKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN-NGQMDLE 173
           LG    +  AA+ AL A PG LQ+GGG+  DN   Y  + A+ VIVTS +F+ +G   L+
Sbjct: 62  LGQS--NDEAALMALQAAPGFLQLGGGVTKDNC-QYWLQWASKVIVTSALFDSDGSFQLQ 118

Query: 174 RLKDLVRVVGKQRLVLDLSCRK-KDG-KYAIVTDRWQKFSDVYLDERVLDFLASYADEFL 231
           RL+++  + G+ RLV+DLSCR+  DG  + ++ ++WQ  + + L+E  L  L+ Y  EFL
Sbjct: 119 RLREISGLCGRARLVVDLSCRRASDGASWTVMMNKWQTPTTLALNEETLALLSEYCSEFL 178

Query: 232 VHGVDVEGKKLGIDDELVALLGKYSP-----IPVTYAGGVTTMADLEKIKVAGIGRVDVT 286
           +H  DVEG   GID+ELVA LG ++      + V YAGG  ++ADL  +K    GRVD+T
Sbjct: 179 IHAADVEGLCRGIDEELVAQLGLWAAQLRGDVRVVYAGGANSVADLGLVKRLSGGRVDLT 238

Query: 287 VGSALDIFGGNLA-YKDVVAWHAQQ 310
            GSALDIFGG+L  ++D  AW+ QQ
Sbjct: 239 YGSALDIFGGSLVRFQDCCAWNRQQ 263

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q9HFV5|HIS4_CANAX 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase OS=Candida albicans GN=HIS6 PE=3 SV=1

 Score =  209 bits (531), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 110/271 (40%), Positives = 172/271 (63%), Gaps = 17/271 (6%)

Query: 54  VRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVT---NFESDKSAAEFANLYKEDGLTGG 110
            +FR CIDIH G+VKQIVG TL       +K  +   NF S K ++ +A LYK+  + G 
Sbjct: 2   TKFRGCIDIHSGQVKQIVGGTLTQDDSASSKTSSAKENFVSTKPSSHYAQLYKDYNVKGC 61

Query: 111 HAIMLGADPLSKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNG-- 168
           H I LG++P +  AA  AL  +P  LQVGGGIN DN+  ++++GA+HVI+TS++F     
Sbjct: 62  HVIKLGSNPANDDAAKLALSTWPHNLQVGGGINLDNAQYWLDQGASHVILTSWLFTKNEQ 121

Query: 169 ---QMDLERLKDLVRVVGKQRLVLDLSCRK--KDGK--YAIVTDRWQKFSDVYLDERVLD 221
              ++D  +L+++ +++GK++L++DLSCR   ++GK  + +  ++WQ  +D  L    L 
Sbjct: 122 DKMELDFGKLREISKLIGKEKLIVDLSCRTVIENGKTNWYVAMNKWQTITDTILSAEFLL 181

Query: 222 FLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPI----PVTYAGGVTTMADLEKIKV 277
            +++Y DEFL+H  DVEG   GID++LV  LG++ P+     + YAGG  ++ DL+ +  
Sbjct: 182 KVSAYCDEFLIHAADVEGLCKGIDEKLVENLGEWCPVGFEEKIVYAGGAKSINDLDTVAK 241

Query: 278 AGIGRVDVTVGSALDIFGGNLA-YKDVVAWH 307
              G+VD+T GS+LDIF G L  + D+V W+
Sbjct: 242 LSKGKVDLTYGSSLDIFSGKLVNFTDLVEWN 272

Candida albicans (taxid: 5476)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q6CQL7|HIS4_KLULA 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=HIS6 PE=3 SV=1

 Score =  208 bits (529), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 118/270 (43%), Positives = 167/270 (61%), Gaps = 17/270 (6%)

Query: 55  RFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIM 114
           +F  CID+H G+VKQIVG TL DS  D  K+ TNF S    + +A LY E+ + G H I 
Sbjct: 3   KFVGCIDLHDGQVKQIVGGTLTDSSKD--KVTTNFVSKLPPSHYAKLYHENQVEGCHVIK 60

Query: 115 LGADPLSKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNG--QMDL 172
           LG  P +  AA+EAL+  P  LQVGGGI  DN   Y  + A+ +IVTS++F+    Q   
Sbjct: 61  LG--PNNDEAALEALNECPNFLQVGGGITLDNC-GYWLKYASKIIVTSFLFDKSTYQFQR 117

Query: 173 ERLKDLVRVVGKQRLVLDLSCRK-----KDGKYAIVTDRWQKFSDVYLDERVLDFLASYA 227
           E+L  L  + GK RLV+DLSC++     ++ K+ +  ++WQ  +D+ L+ER    L  Y 
Sbjct: 118 EKLVKLAEICGKDRLVVDLSCKRVTKPDQEPKWVVAMNKWQTLTDLELNERTFADLCQYT 177

Query: 228 DEFLVHGVDVEGKKLGIDDELVALLGKYS----PIPVTYAGGVTTMADLEKIKVAGIGRV 283
           DEFLVH  DVEG   GID+ELVA L K++     + + YAGG  ++ DL  ++    G++
Sbjct: 178 DEFLVHAADVEGLCNGIDEELVAHLYKWTADIPKVKIVYAGGAKSVDDLRLVEKLSHGKI 237

Query: 284 DVTVGSALDIFGGNLA-YKDVVAWHAQQEA 312
           D+T GSALDIFGG+L  ++D V W+ ++ A
Sbjct: 238 DLTFGSALDIFGGSLVKFEDCVQWNHEKHA 267

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q6BUV9|HIS4_DEBHA 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=HIS6 PE=3 SV=2

 Score =  205 bits (522), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 116/274 (42%), Positives = 170/274 (62%), Gaps = 22/274 (8%)

Query: 54  VRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKL------VTNFESDKSAAEFANLYKEDGL 107
            +FR CIDIH G+VKQIVG TL  ++DD T+L        NF S K ++ +A LYK  G+
Sbjct: 2   TKFRGCIDIHSGQVKQIVGGTL--TQDDTTELNHKSTTTENFVSTKPSSYYAELYKNAGI 59

Query: 108 TGGHAIMLGADPLSKAAAIEALHAYPGGLQVGGGINSDNSLSYIE-EGATHVIVTSYVFN 166
            G H I LG++P +  AA  A  ++P  LQVGGGIN DN+L +++   A+HVI+TS++F+
Sbjct: 60  NGCHVIKLGSNPENDEAAKLACQSWPNNLQVGGGINGDNALEWLDVHKASHVILTSWLFS 119

Query: 167 NG----QMDLERLKDLVRVVGKQRLVLDLSCR--KKDGK--YAIVTDRWQKFSDVYLDER 218
           +     + D  +LK +  +VGK RL++DLSCR  + D K  + +  ++WQ  ++  L   
Sbjct: 120 DSDEGKEFDWVKLKRVSELVGKSRLIVDLSCRELRVDDKIEWVVAMNKWQTLTNNKLSAE 179

Query: 219 VLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPI----PVTYAGGVTTMADLEK 274
            L  ++ Y DEFL+H  DVEG   GID  LVA LG++ P      + YAGG  ++ DL+ 
Sbjct: 180 FLGEVSQYCDEFLIHAADVEGLCNGIDVNLVAKLGEWCPEGFEGKIVYAGGARSVKDLDT 239

Query: 275 IKVAGIGRVDVTVGSALDIFGGNLA-YKDVVAWH 307
           +      +VD+T GSALD+FGG L  + D+V+W+
Sbjct: 240 VSKLSDDKVDLTYGSALDVFGGKLVKFDDLVSWN 273

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|P40545|HIS4_YEAST 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HIS6 PE=1 SV=1

 Score =  201 bits (510), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 115/264 (43%), Positives = 163/264 (61%), Gaps = 12/264 (4%)

Query: 54  VRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAI 113
            +F  CID+H G+VKQIVG TL   K+D  K  TNF S   ++ +A LYK+  + G H I
Sbjct: 2   TKFIGCIDLHNGEVKQIVGGTLTSKKEDVPK--TNFVSQHPSSYYAKLYKDRDVQGCHVI 59

Query: 114 MLGADPLSKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN-NGQMDL 172
            LG  P +  AA EAL   P  LQVGGGIN  N L ++ + A+ VIVTS++F   G   L
Sbjct: 60  KLG--PNNDDAAREALQESPQFLQVGGGINDTNCLEWL-KWASKVIVTSWLFTKEGHFQL 116

Query: 173 ERLKDLVRVVGKQRLVLDLSCRK-KDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFL 231
           +RL+ L  + GK R+V+DLSCRK +DG++ +  ++WQ  +D+ L+      L  Y +EFL
Sbjct: 117 KRLERLTELCGKDRIVVDLSCRKTQDGRWIVAMNKWQTLTDLELNADTFRELRKYTNEFL 176

Query: 232 VHGVDVEGKKLGIDDELVALLGK----YSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTV 287
           +H  DVEG   GID+ LV+ L +    Y  + + YAGG  ++ DL+ +     G+VD+T 
Sbjct: 177 IHAADVEGLCGGIDELLVSKLFEWTKDYDDLKIVYAGGAKSVDDLKLVDELSHGKVDLTF 236

Query: 288 GSALDIFGGNLA-YKDVVAWHAQQ 310
           GS+LDIFGGNL  ++D   W+ +Q
Sbjct: 237 GSSLDIFGGNLVKFEDCCRWNEKQ 260

Catalyzes the isomerization of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q6FPN5|HIS4_CANGA 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=HIS6 PE=3 SV=1

 Score =  187 bits (474), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 112/265 (42%), Positives = 166/265 (62%), Gaps = 14/265 (5%)

Query: 54  VRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAI 113
            +F  CID+H G+VKQIVG TL+D+ D    L TNF S    + +A LY E+ + G H I
Sbjct: 2   TKFVGCIDLHDGQVKQIVGGTLKDNDD---SLETNFVSKYPPSYYAQLYLENRIEGCHVI 58

Query: 114 MLGADPLSKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN-NGQMDL 172
            LG  P + AAA+EAL+A PG LQVGGGIN +N L ++E+ A+ +IVTS++F   G   +
Sbjct: 59  KLG--PNNDAAAMEALNAAPGFLQVGGGINDENCLQWLEK-ASKIIVTSWLFTKEGTFLM 115

Query: 173 ERLKDLVRVVGKQRLVLDLSCRKK-DGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFL 231
           +RL+ L    G  R+V+DLSCR+  D K+ +  ++WQ  + + L++     L+ Y DEFL
Sbjct: 116 DRLQLLSNKCGPDRIVVDLSCRRTPDSKWVVAMNKWQTLTTLELNKETFTELSKYTDEFL 175

Query: 232 VHGVDVEGKKLGIDDELVALLGKYS-----PIPVTYAGGVTTMADLEKIKVAGIGRVDVT 286
           +H  DVEG   GI+ +LV  L +++      + + YAGG  +++DLE +     G VD+T
Sbjct: 176 IHAADVEGLCKGIETDLVTKLYEWTKDINKEVKIVYAGGAKSISDLELVDKLSNGTVDLT 235

Query: 287 VGSALDIFGGNLA-YKDVVAWHAQQ 310
            GS+LDIFGG L  ++D   W+++ 
Sbjct: 236 YGSSLDIFGGKLVRFQDCCEWNSKH 260

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 6

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	316
TAIR|locus:2049470	304	APG10 "ALBINO AND PALE GREEN 1	0.955	0.993	0.751	1.3e-118
POMBASE|SPAC3F10.09	264	SPAC3F10.09 "1-(5-phosphoribos	0.806	0.965	0.486	3.4e-61
UNIPROTKB|G4N3L9	261	MGG_04998 "Phosphoribosylformi	0.797	0.965	0.458	1.3e-54
CGD|CAL0002920	279	orf19.1249 [Candida albicans (	0.800	0.906	0.418	3.1e-51
SGD|S000001282	261	HIS6 "Phosphoribosylformimino-	0.794	0.961	0.437	4.1e-49
UNIPROTKB|Q9KSW9	245	hisA "1-(5-phosphoribosyl)-5-[	0.734	0.946	0.269	1.2e-12
TIGR_CMR|VC_1137	245	VC_1137 "phosphoribosylformimi	0.734	0.946	0.269	1.2e-12
TIGR_CMR|CJE_1773	243	CJE_1773 "phosphoribosylformim	0.683	0.888	0.304	8.3e-12
UNIPROTKB|P10371	245	hisA [Escherichia coli K-12 (t	0.743	0.959	0.245	2.5e-06
TIGR_CMR|CPS_3894	261	CPS_3894 "phosphoribosylformim	0.610	0.739	0.248	6.8e-06

TAIR|locus:2049470 APG10 "ALBINO AND PALE GREEN 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 1168 (416.2 bits), Expect = 1.3e-118, P = 1.3e-118
 Identities = 227/302 (75%), Positives = 254/302 (84%)

Query:    12 RTRSLQPTSVSDLFWLHKNNNSSFYAXXXXXXXXXXXXVRCAVRFRPCIDIHKGKVKQIV 71
             RT S Q  S   L W  K N SS +             +  AV+FRPCIDIHKGKVKQIV
Sbjct:     2 RTLSSQLYSNGGLTWFQKKNQSSLFIKHLRVSKPSRVQLISAVQFRPCIDIHKGKVKQIV 61

Query:    72 GSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHA 131
             GSTL+D K+DG+ LVTNFESDKSA E+A +YKEDGLTGGH IMLGADPLS+AAAI ALHA
Sbjct:    62 GSTLRDLKEDGSVLVTNFESDKSAEEYAKMYKEDGLTGGHVIMLGADPLSQAAAIGALHA 121

Query:   132 YPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDL 191
             YPGGLQVGGGINS+N +SYIEEGA+HVIVTSYVFNNG++DLERLKD+V +VGKQRL+LDL
Sbjct:   122 YPGGLQVGGGINSENCMSYIEEGASHVIVTSYVFNNGKIDLERLKDIVSIVGKQRLILDL 181

Query:   192 SCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVAL 251
             SCRKKDG+YAIVTDRWQKFSDV LDE+ L+FL  ++DEFLVHGVDVEGKKLGID+ELVAL
Sbjct:   182 SCRKKDGRYAIVTDRWQKFSDVILDEKSLEFLGGFSDEFLVHGVDVEGKKLGIDEELVAL 241

Query:   252 LGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQQE 311
             LG YSPIPVTYAGGVT M D+E+IK AG GRVDVTVGSALDIFGGNL YKDVVAWH +Q 
Sbjct:   242 LGNYSPIPVTYAGGVTVMDDVERIKDAGKGRVDVTVGSALDIFGGNLPYKDVVAWHHKQH 301

Query:   312 AL 313
             +L
Sbjct:   302 SL 303

GO:0000105 "histidine biosynthetic process" evidence=IEA;ISS;IDA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003949 "1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA;TAS

GO:0007020 "microtubule nucleation" evidence=RCA

POMBASE|SPAC3F10.09 SPAC3F10.09 "1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino]imidazole-4-carboxamide isomerase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 626 (225.4 bits), Expect = 3.4e-61, P = 3.4e-61
 Identities = 127/261 (48%), Positives = 177/261 (67%)

Query:    56 FRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIML 115
             FRPCIDIH+G+VKQIVG TL +  D    + TN+ S K ++ +A LYK + L G H IML
Sbjct:     9 FRPCIDIHQGQVKQIVGGTLGNDAD----VKTNYVSLKPSSYYAELYKLNHLEGAHVIML 64

Query:   116 GADPLSKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERL 175
             G  P  + AA  ALH +PG LQ+GGGIN  N+ ++++EGA+ VIVTS++F + Q DL+RL
Sbjct:    65 G--PNCEEAAKTALHTWPGALQIGGGINISNAQNWLQEGASKVIVTSWLFPDAQFDLDRL 122

Query:   176 KDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGV 235
             K +   +GK RLV+D+SCR+KD ++    ++WQ  +   L+E  LD L+ Y  EFL+H  
Sbjct:   123 KAISSKIGKDRLVVDVSCRRKDNRWFAAINKWQVMTAFELNEENLDLLSQYCSEFLIHAA 182

Query:   236 DVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFG 295
             DVEG   GID++LV  LG++  IP TYAGG  ++ DL+ +     G+VD+T+GSALDIFG
Sbjct:   183 DVEGLCKGIDEDLVIKLGEWVKIPTTYAGGGRSIEDLDLVDKLSKGKVDLTIGSALDIFG 242

Query:   296 GNLAYKDVVAWHAQQEALTVQ 316
             G L +  VVAW+ +   L +Q
Sbjct:   243 GVLEFTRVVAWNRRFTPLPLQ 263

GO:0000105 "histidine biosynthetic process" evidence=ISO

GO:0003949 "1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|G4N3L9 MGG_04998 "Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
 Identities = 121/264 (45%), Positives = 169/264 (64%)

Query:    55 RFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIM 114
             RFRPCID+H G+VKQIVG TL DS    ++L TNF S    A FA LY++  L G H IM
Sbjct:     3 RFRPCIDLHAGQVKQIVGGTL-DSTT--SELRTNFVSPHPPAHFARLYRDANLVGAHVIM 59

Query:   115 LGADPLSKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLER 174
             LG  P +  AA E+L A+PGGLQVGGGI   N+  +I  GA   I+TS++F  G+    R
Sbjct:    60 LG--PGNDVAAKESLAAWPGGLQVGGGITDKNAAEWIANGADKAIITSFLFPEGRFSQSR 117

Query:   175 LKDLVRVVG--KQRLVLDLSCRKKD-G---KYAIVTDRWQKFSDVYLDERVLDFLASYAD 228
             L  ++  +G  K +LV+DLSCR++D G   K+ +  ++WQ  +D+ +++  +  L  Y  
Sbjct:   118 LDAVLAALGNDKSKLVIDLSCRRRDTGPEPKWVVAMNKWQTLTDMEVNQDSIKKLEPYCS 177

Query:   229 EFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVG 288
             EFL+H  D EG + GID++LV  L ++  IPVTYAGG   + DLE +K    G+VD+T+G
Sbjct:   178 EFLIHAADNEGLQGGIDEDLVRNLAEWCSIPVTYAGGGRNLDDLEAVKRLSNGKVDLTIG 237

Query:   289 SALDIFGGN-LAYKDVVAWHAQQE 311
             SALD FGG+ +   D + W+ +QE
Sbjct:   238 SALDCFGGSGVKLDDCIEWNKRQE 261

GO:0005575 "cellular_component" evidence=ND

CGD|CAL0002920 orf19.1249 [Candida albicans (taxid:5476)]

 Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
 Identities = 113/270 (41%), Positives = 173/270 (64%)

Query:    55 RFRPCIDIHKGKVKQIVGSTL--QDSKDDGTKLVT-NFESDKSAAEFANLYKEDGLTGGH 111
             +FR CIDIH G+VKQIVG TL   DS    T     NF S K ++ +A LYK+  + G H
Sbjct:     3 KFRGCIDIHSGQVKQIVGGTLTQDDSASSKTSSAKENFVSTKPSSHYAQLYKDYNVKGCH 62

Query:   112 AIMLGADPLSKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMD 171
              I LG++P +  AA  AL  +P  LQVGGGIN DN+  ++++GA+HVI+TS++F   + D
Sbjct:    63 VIKLGSNPANDDAAKLALSTWPHNLQVGGGINLDNAQYWLDQGASHVILTSWLFTKNEQD 122

Query:   172 -LE----RLKDLVRVVGKQRLVLDLSCRK--KDGK--YAIVTDRWQKFSDVYLDERVLDF 222
              +E    +L+++ +++GK++L++DLSCR   ++GK  + +  ++WQ  +D  L    L  
Sbjct:   123 KMELDFGKLREINKLIGKEKLIVDLSCRTVIENGKTNWYVAMNKWQTITDTILSAEFLLK 182

Query:   223 LASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPI----PVTYAGGVTTMADLEKIKVA 278
             +++Y DEFL+H  DVEG   GID++LV  LG++ P+     + YAGG  ++ DL+ +   
Sbjct:   183 VSAYCDEFLIHAADVEGLCKGIDEKLVENLGEWCPVGFEEKIVYAGGAKSINDLDTVAKL 242

Query:   279 GIGRVDVTVGSALDIFGGNLA-YKDVVAWH 307
               G+VD+T GS+LDIF G L  + D+V W+
Sbjct:   243 SKGKVDLTYGSSLDIFSGKLVNFTDLVEWN 272

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0000105 "histidine biosynthetic process" evidence=IEA

GO:0003949 "1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino

SGD|S000001282 HIS6 "Phosphoribosylformimino-5aminoimidazole carboxamide ribotide isomerase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
 Identities = 115/263 (43%), Positives = 163/263 (61%)

Query:    55 RFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIM 114
             +F  CID+H G+VKQIVG TL   K+D  K  TNF S   ++ +A LYK+  + G H I 
Sbjct:     3 KFIGCIDLHNGEVKQIVGGTLTSKKEDVPK--TNFVSQHPSSYYAKLYKDRDVQGCHVIK 60

Query:   115 LGADPLSKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNN-GQMDLE 173
             LG  P +  AA EAL   P  LQVGGGIN  N L +++  A+ VIVTS++F   G   L+
Sbjct:    61 LG--PNNDDAAREALQESPQFLQVGGGINDTNCLEWLK-WASKVIVTSWLFTKEGHFQLK 117

Query:   174 RLKDLVRVVGKQRLVLDLSCRK-KDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLV 232
             RL+ L  + GK R+V+DLSCRK +DG++ +  ++WQ  +D+ L+      L  Y +EFL+
Sbjct:   118 RLERLTELCGKDRIVVDLSCRKTQDGRWIVAMNKWQTLTDLELNADTFRELRKYTNEFLI 177

Query:   233 HGVDVEGKKLGIDDELVALLGK----YSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVG 288
             H  DVEG   GID+ LV+ L +    Y  + + YAGG  ++ DL+ +     G+VD+T G
Sbjct:   178 HAADVEGLCGGIDELLVSKLFEWTKDYDDLKIVYAGGAKSVDDLKLVDELSHGKVDLTFG 237

Query:   289 SALDIFGGNLA-YKDVVAWHAQQ 310
             S+LDIFGGNL  ++D   W+ +Q
Sbjct:   238 SSLDIFGGNLVKFEDCCRWNEKQ 260

GO:0000105 "histidine biosynthetic process" evidence=IEA;IGI;IMP

GO:0005622 "intracellular" evidence=TAS

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0003949 "1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q9KSW9 hisA "1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 177 (67.4 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 69/256 (26%), Positives = 118/256 (46%)

Query:    58 PCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIML-G 116
             P +D+ +G+V ++         D G   VT ++ D  A +F NLY + G    H + L G
Sbjct:     4 PALDLIEGQVVRLYQG------DYGQ--VTEYKVDP-AEQF-NLYHQAGAGWLHLVDLTG 53

Query:   117 A-DPLSKAAAIEA--LHAYPGGLQVGGGINSDNSL-SYIEEGATHVIVTSYVFNNGQMDL 172
             A +  ++   + A  L + P  +Q+GGG+ S+  +   +E GA  V+V S      Q+  
Sbjct:    54 AKNTAARQLNLIARLLASTPANIQIGGGVRSEQDVVDLLEAGAQRVVVGSTAVKQPQL-- 111

Query:   173 ERLKDLVRVVGKQRLVLDLSCR-KKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFL 231
               +K  +   G +++VL L     + G   +    WQ+ S V ++  + D+L       L
Sbjct:   112 --VKSWIEKYGAEKIVLALDINIDEQGTRKVAISGWQEDSGVTIEALIDDYLTVGLQHVL 169

Query:   232 VHGVDVEGKKLGIDDELVA-LLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSA 290
                +  +G   G + EL   L  +Y  +    +GG+ ++AD+E +K  G G   V VG A
Sbjct:   170 CTDISRDGTLAGSNVELYRDLCRQYPQVQFQSSGGIGSLADIEALK--GTGVAGVIVGRA 227

Query:   291 LDIFGGNLAYKDVVAW 306
             L + G   A +    W
Sbjct:   228 L-LDGKFTAQEAFACW 242

GO:0000105 "histidine biosynthetic process" evidence=ISS

GO:0003949 "1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino

TIGR_CMR|VC_1137 VC_1137 "phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 177 (67.4 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 69/256 (26%), Positives = 118/256 (46%)

Query:    58 PCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIML-G 116
             P +D+ +G+V ++         D G   VT ++ D  A +F NLY + G    H + L G
Sbjct:     4 PALDLIEGQVVRLYQG------DYGQ--VTEYKVDP-AEQF-NLYHQAGAGWLHLVDLTG 53

Query:   117 A-DPLSKAAAIEA--LHAYPGGLQVGGGINSDNSL-SYIEEGATHVIVTSYVFNNGQMDL 172
             A +  ++   + A  L + P  +Q+GGG+ S+  +   +E GA  V+V S      Q+  
Sbjct:    54 AKNTAARQLNLIARLLASTPANIQIGGGVRSEQDVVDLLEAGAQRVVVGSTAVKQPQL-- 111

Query:   173 ERLKDLVRVVGKQRLVLDLSCR-KKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFL 231
               +K  +   G +++VL L     + G   +    WQ+ S V ++  + D+L       L
Sbjct:   112 --VKSWIEKYGAEKIVLALDINIDEQGTRKVAISGWQEDSGVTIEALIDDYLTVGLQHVL 169

Query:   232 VHGVDVEGKKLGIDDELVA-LLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSA 290
                +  +G   G + EL   L  +Y  +    +GG+ ++AD+E +K  G G   V VG A
Sbjct:   170 CTDISRDGTLAGSNVELYRDLCRQYPQVQFQSSGGIGSLADIEALK--GTGVAGVIVGRA 227

Query:   291 LDIFGGNLAYKDVVAW 306
             L + G   A +    W
Sbjct:   228 L-LDGKFTAQEAFACW 242

GO:0000105 "histidine biosynthetic process" evidence=ISS

GO:0003949 "1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino

TIGR_CMR|CJE_1773 CJE_1773 "phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 172 (65.6 bits), Expect = 8.3e-12, P = 8.3e-12
 Identities = 73/240 (30%), Positives = 113/240 (47%)

Query:    58 PCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNF-ESDKSAAEFANLYKEDGLTGGHAIMLG 116
             P +D+  G+V ++V    +  K      +  F E +K+ A+   L+  D LTG       
Sbjct:     6 PALDLIDGEVVRLVKGDYEQKKVYKYNPLKKFKEYEKAGAK--ELHLVD-LTGAK----- 57

Query:   117 ADPLSKA-AAIEALHAYPG-GLQVGGGINSD-NSLSYIEEGATHVIVTSYVFNNGQMDLE 173
              DP  +  A IE L       LQVGGGI S   + + ++ G   V++ S    +  + LE
Sbjct:    58 -DPSKRQFALIEKLAKEVSVNLQVGGGIRSKAEARALLDCGVKRVVIGSMAIKDATLCLE 116

Query:   174 RLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYA-DEFLV 232
              LK+     G + +VL L    K+  Y +  + WQ+ SD  L E VLDF ++      L 
Sbjct:   117 ILKEF----GSEAIVLALDTILKED-YVVAVNAWQEASDKKLME-VLDFYSNKGLKHILC 170

Query:   233 HGVDVEGKKLGIDDELVALLGKYSP-IPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL 291
               +  +G   G++  L  L+ +  P I +  +GGV ++ DLE +K  GI    V VG AL
Sbjct:   171 TDISKDGTMQGVNARLYKLIHEIFPHICIQASGGVASLKDLENLK--GICS-GVIVGKAL 227

GO:0000105 "histidine biosynthetic process" evidence=ISS

GO:0003949 "1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino

UNIPROTKB|P10371 hisA [Escherichia coli K-12 (taxid:83333)]

 Score = 131 (51.2 bits), Expect = 2.5e-06, P = 2.5e-06
 Identities = 62/253 (24%), Positives = 103/253 (40%)

Query:    58 PCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGA 117
             P +D+  G V ++        +D G   +   +    AA+ A +     LTG        
Sbjct:     4 PALDLIDGTVVRLHQGDYGKQRDYGNDPLPRLQD--YAAQGAEVLHLVDLTGAKDPAKRQ 61

Query:   118 DPLSKAAAIEALHAYPGGLQVGGGINSDNSLS-YIEEGATHVIVTSYVFNNGQMDLERLK 176
              PL K   +  ++  P  +QVGGG+ S+  ++  +E G   V+V S    +  M    +K
Sbjct:    62 IPLIKTL-VAGVNV-P--VQVGGGVRSEEDVAALLEAGVARVVVGSTAVKSQDM----VK 113

Query:   177 DLVRVVGKQRLVLDLSCR-KKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGV 235
                   G   LVL L  R  + G   +    WQ+ S V L++ V  +L       L   +
Sbjct:   114 GWFERFGADALVLALDVRIDEQGNKQVAVSGWQENSGVSLEQLVETYLPVGLKHVLCTDI 173

Query:   236 DVEGKKLGIDDELVA-LLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIF 294
               +G   G +  L   +  +Y  +    +GG+  + D+  ++  G G   V VG AL   
Sbjct:   174 SRDGTLAGSNVSLYEEVCARYPQVAFQSSGGIGDIDDVAALR--GTGVRGVIVGRAL--L 229

Query:   295 GGNLAYKDVVA-W 306
              G    K+ +A W
Sbjct:   230 EGKFTVKEAIACW 242

GO:0006974 "response to DNA damage stimulus" evidence=IEP

GO:0005737 "cytoplasm" evidence=IEA

GO:0003949 "1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino

GO:0000105 "histidine biosynthetic process" evidence=IEA;IDA

TIGR_CMR|CPS_3894 CPS_3894 "phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 128 (50.1 bits), Expect = 6.8e-06, P = 6.8e-06
 Identities = 54/217 (24%), Positives = 100/217 (46%)

Query:   102 YKEDGLTGGHAIML-GADPLSKAA--AIEALHAYPGGL-QVGGGINSDNSLSYIEE-GAT 156
             Y E G T  H + L GA   +K     ++ +  +P  + QVGGG+  ++ +  +   GA 
Sbjct:    38 YAESGATVMHFVDLDGAKDSTKRQLKTLKTVVNHPSMIIQVGGGVRCEDDVKQLLALGAD 97

Query:   157 HVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCR-KKDGKYAIVTDRWQKFSDVYL 215
              V++ S      ++    +   V+  G +++VL L  +    G   + T  W + S V L
Sbjct:    98 RVVIGSLAIKQPEL----VTQWVKTYGCEKIVLALDIKIDAQGNKTLPTHGWIEDSGVNL 153

Query:   216 DERVLDFLASYADEFLVHGV--DV--EGKKLGIDDELVA-LLGKYSPIPVTYAGGVTTMA 270
             +    D LA Y D  + H +  D+  +G   G + +L + +  KY  I    +GG+ ++A
Sbjct:   154 E----DLLAQYQDAGIKHVLCTDISKDGTLTGTNVDLYSEVCAKYPDIDWQASGGIGSLA 209

Query:   271 DLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVA-W 306
             D++ +   G+    V +G +L    G    ++ +A W
Sbjct:   210 DIKALIPTGVS--GVILGRSL--LEGKFTLEEAIACW 242

GO:0000105 "histidine biosynthetic process" evidence=ISS

GO:0003949 "1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6CQL7	HIS4_KLULA	5, ., 3, ., 1, ., 1, 6	0.4370	0.8006	0.9475	yes	no
O82782	HIS4_ARATH	5, ., 3, ., 1, ., 1, 6	0.7649	0.9556	0.9934	yes	no
Q10184	HIS4_SCHPO	5, ., 3, ., 1, ., 1, 6	0.4865	0.8069	0.9659	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.3.1.16	0.979
3rd Layer	5.3.1	0.983

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00021607001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (306 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00027290001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (570 aa)	•		•	•		•	•		0.993
	GSVIVG00037970001	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (289 aa)	•			•		•	•		0.991
	GSVIVG00002274001	RecName- Full=Histidinol dehydrogenase; EC=1.1.1.23;; Catalyzes the sequential NAD-dependent ox [...] (438 aa)	•			•		•	•		0.946
	GSVIVG00019988001	RecName- Full=Imidazoleglycerol-phosphate dehydratase; EC=4.2.1.19; (180 aa)	•					•	•		0.921
	GSVIVG00035413001	SubName- Full=Chromosome chr12 scaffold_78, whole genome shotgun sequence; (390 aa)	•						•		0.652
	GSVIVG00000429001	SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (534 aa)	•			•			•		0.590
	GSVIVG00029073001	SubName- Full=Chromosome chr12 scaffold_47, whole genome shotgun sequence; (396 aa)	•						•		0.578
	GSVIVG00006013001	RecName- Full=DNA polymerase; EC=2.7.7.7; (1126 aa)							•		0.527
	GSVIVG00031801001	SubName- Full=Chromosome chr18 scaffold_59, whole genome shotgun sequence; (269 aa)	•						•		0.495
	GSVIVG00024606001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (288 aa)	•						•		0.491

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	316
PLN02446	262	PLN02446, PLN02446, (5-phosphoribosyl)-5-[(5- phos	0.0
TIGR02129	253	TIGR02129, hisA_euk, phosphoribosylformimino-5-ami	1e-138
cd04723	233	cd04723, HisA_HisF, Phosphoribosylformimino-5-amin	5e-65
COG0106	241	COG0106, HisA, Phosphoribosylformimino-5-aminoimid	9e-36
pfam00977	230	pfam00977, His_biosynth, Histidine biosynthesis pr	9e-29
cd04732	234	cd04732, HisA, HisA	1e-16
TIGR00007	230	TIGR00007, TIGR00007, phosphoribosylformimino-5-am	2e-14
PRK13585	241	PRK13585, PRK13585, 1-(5-phosphoribosyl)-5-[(5- ph	2e-12
TIGR03572	232	TIGR03572, WbuZ, glycosyl amidation-associated pro	1e-08
PRK01033	258	PRK01033, PRK01033, imidazole glycerol phosphate s	3e-07
PRK00748	233	PRK00748, PRK00748, 1-(5-phosphoribosyl)-5-[(5- ph	4e-07
cd04731	243	cd04731, HisF, The cyclase subunit of imidazolegly	4e-06
PRK13586	232	PRK13586, PRK13586, 1-(5-phosphoribosyl)-5-[(5- ph	3e-04
PRK04128	228	PRK04128, PRK04128, 1-(5-phosphoribosyl)-5-[(5- ph	6e-04
TIGR00735	254	TIGR00735, hisF, imidazoleglycerol phosphate synth	0.001
PRK13587	234	PRK13587, PRK13587, 1-(5-phosphoribosyl)-5-[(5- ph	0.003

>gnl|CDD|215245 PLN02446, PLN02446, (5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase

 Score =  513 bits (1324), Expect = 0.0
 Identities = 208/262 (79%), Positives = 238/262 (90%), Gaps = 3/262 (1%)

Query: 54  VRFRPCIDIHKGKVKQIVGSTLQDSKD---DGTKLVTNFESDKSAAEFANLYKEDGLTGG 110
           VRFRPCIDIHKGKVKQIVGSTL+DSKD   DG++LVTNFESDKSAAEFA +YK DGLTGG
Sbjct: 1   VRFRPCIDIHKGKVKQIVGSTLKDSKDGSEDGSELVTNFESDKSAAEFAEMYKRDGLTGG 60

Query: 111 HAIMLGADPLSKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQM 170
           H IMLGAD  S AAA+EAL AYPGGLQVGGG+NS+N++SY++ GA+HVIVTSYVF +GQ+
Sbjct: 61  HVIMLGADDASLAAALEALRAYPGGLQVGGGVNSENAMSYLDAGASHVIVTSYVFRDGQI 120

Query: 171 DLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEF 230
           DLERLKDLVR+VGKQRLVLDLSCRKKDG+Y +VTDRWQKFSD+ +DE  L+FLA+Y DEF
Sbjct: 121 DLERLKDLVRLVGKQRLVLDLSCRKKDGRYYVVTDRWQKFSDLAVDEETLEFLAAYCDEF 180

Query: 231 LVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSA 290
           LVHGVDVEGK+LGID+ELVALLG++SPIPVTYAGGV ++ DLE++KVAG GRVDVTVGSA
Sbjct: 181 LVHGVDVEGKRLGIDEELVALLGEHSPIPVTYAGGVRSLDDLERVKVAGGGRVDVTVGSA 240

Query: 291 LDIFGGNLAYKDVVAWHAQQEA 312
           LDIFGGNL Y DVVAWH QQ+ 
Sbjct: 241 LDIFGGNLPYDDVVAWHKQQKT 262

Length = 262

>gnl|CDD|162719 TIGR02129, hisA_euk, phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type

 Score =  390 bits (1004), Expect = e-138
 Identities = 141/256 (55%), Positives = 189/256 (73%), Gaps = 6/256 (2%)

Query: 54  VRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAI 113
            +FRPCIDIH GKVKQIVG TL   K     L TNF SDK ++ +A LYK+DG+ G H I
Sbjct: 1   TKFRPCIDIHNGKVKQIVGGTLTSKKGSV--LKTNFVSDKPSSYYAKLYKDDGVKGCHVI 58

Query: 114 MLGADPLSKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLE 173
           MLG +  +  AA EALHAYPGGLQVGGGIN  N+  +++EGA+HVIVTS++F  G+ DL+
Sbjct: 59  MLGPN--NDDAAKEALHAYPGGLQVGGGINDTNAQEWLDEGASHVIVTSWLFTKGKFDLK 116

Query: 174 RLKDLVRVVGKQRLVLDLSCRKK-DGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLV 232
           RLK++V +VGK RL++DLSCRK  DG++ +  ++WQ  +D+ L+   L+ L+ Y DEFL+
Sbjct: 117 RLKEIVSLVGKDRLIVDLSCRKTQDGRWIVAMNKWQTITDLELNAETLEELSKYCDEFLI 176

Query: 233 HGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALD 292
           H  DVEG   GID+ELV+ LG++SPIP+TYAGG  ++ DL+ +     G+VD+T+GSALD
Sbjct: 177 HAADVEGLCKGIDEELVSKLGEWSPIPITYAGGAKSIDDLDLVDELSKGKVDLTIGSALD 236

Query: 293 IFGGN-LAYKDVVAWH 307
           IFGGN + + D VAW+
Sbjct: 237 IFGGNLVKFTDCVAWN 252

This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut [Amino acid biosynthesis, Histidine family]. Length = 253

>gnl|CDD|240074 cd04723, HisA_HisF, Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

 Score =  204 bits (520), Expect = 5e-65
 Identities = 84/255 (32%), Positives = 115/255 (45%), Gaps = 26/255 (10%)

Query: 55  RFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIM 114
           R  P ID+  G V   VG       D+   + +N  S     + A  YKE G  G +   
Sbjct: 1   RIIPVIDLKDGVVVHGVGGDR----DNYRPITSNLCSTSDPLDVARAYKELGFRGLYIAD 56

Query: 115 LGA---DPLSKAAAIEALHAYPGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFNNGQM 170
           L A      +  A  E   A+P GL V GGI S +N+  +++ GA+ VIV +    +   
Sbjct: 57  LDAIMGRGDNDEAIRELAAAWPLGLWVDGGIRSLENAQEWLKRGASRVIVGTETLPSDD- 115

Query: 171 DLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEF 230
           D +RL  L    G+QRLVL L  R              K +D    E +L  LA + +E 
Sbjct: 116 DEDRLAAL----GEQRLVLSLDFRGGQLL---------KPTDFIGPEELLRRLAKWPEEL 162

Query: 231 LVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSA 290
           +V  +D  G   G D EL+  L   + IPV  AGGV ++ DLE +K   +G     V SA
Sbjct: 163 IVLDIDRVGSGQGPDLELLERLAARADIPVIAAGGVRSVEDLELLK--KLGASGALVASA 220

Query: 291 LDIFGGNLAYKDVVA 305
           L   G  L  +DVV 
Sbjct: 221 LHDGG--LTLEDVVR 233

The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''- phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4- carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. Length = 233

>gnl|CDD|223184 COG0106, HisA, Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]

 Score =  128 bits (325), Expect = 9e-36
 Identities = 67/245 (27%), Positives = 101/245 (41%), Gaps = 17/245 (6%)

Query: 56  FRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIML 115
             P ID+  GKV ++V                   + K + + A       L G  A   
Sbjct: 4   IIPAIDLKDGKVVRLVQGDYGKETVYSDD--PLEVAKKWSDQGAEWLHLVDLDGAKA--- 58

Query: 116 GADPLSKAAAIEALHAYPGGLQVGGGINSDNSL-SYIEEGATHVIVTSYVFNNGQMDLER 174
           G  P +  A  E L A    +QVGGGI S   + + ++ G   VI+ +    N     + 
Sbjct: 59  GG-PRNLEAIKEILEATDVPVQVGGGIRSLEDVEALLDAGVARVIIGTAAVKN----PDL 113

Query: 175 LKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHG 234
           +K+L    G  R+V+ L  R  DGK A+    WQ+ S V L+E             L   
Sbjct: 114 VKELCEEYG-DRIVVALDAR--DGKVAV--SGWQEDSGVELEELAKRLEEVGLAHILYTD 168

Query: 235 VDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIF 294
           +  +G   G + +LV  L +   IPV  +GGV+++ D++ +K    G   V VG AL   
Sbjct: 169 ISRDGTLSGPNVDLVKELAEAVDIPVIASGGVSSLDDIKALKELS-GVEGVIVGRALYEG 227

Query: 295 GGNLA 299
              L 
Sbjct: 228 KFTLE 232

Length = 241

>gnl|CDD|216225 pfam00977, His_biosynth, Histidine biosynthesis protein

 Score =  109 bits (276), Expect = 9e-29
 Identities = 59/239 (24%), Positives = 101/239 (42%), Gaps = 23/239 (9%)

Query: 58  PCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGA 117
           P ID+  G+V ++     +           +        E A  Y+E+G    H + L A
Sbjct: 4   PAIDLKDGRVVRLY----KGDYFKNLVYAGDP------VELAKRYEEEGADELHFVDLDA 53

Query: 118 DPLSKAAAIEALH----AYPGGLQVGGGINSDNSLS-YIEEGATHVIVTSYVFNNGQMDL 172
               +   ++ +          +QVGGGI S       +  GA  VI+ +    N     
Sbjct: 54  AKEGRPVNLDLIEEIAEEVFIPVQVGGGIRSLEDAERLLSAGADKVIIGTAAVKN----P 109

Query: 173 ERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLV 232
           E +K+     G Q +V+ +  +++DGK  +  + W++ + +   E         A E L+
Sbjct: 110 ELIKEAAEKFGSQCIVVAIDAKREDGK--VAINGWREETGIDAVEWAKKLEELGAGEILL 167

Query: 233 HGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL 291
             +D +G   G D EL   L +   IPV  +GGV ++ DL+++   G+    V  GSAL
Sbjct: 168 TDIDRDGTLSGPDLELTRELAEAVNIPVIASGGVGSLEDLKELFSEGV--DGVIAGSAL 224

Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in this family. Histidine is formed by several complex and distinct biochemical reactions catalyzed by eight enzymes. The enzymes in this Pfam entry are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. The structure of HisA is known to be a TIM barrel fold. In some archaeal HisA proteins the TIM barrel is composed of two tandem repeats of a half barrel . This family belong to the common phosphate binding site TIM barrel family. Length = 230

>gnl|CDD|240083 cd04732, HisA, HisA

 Score = 77.1 bits (191), Expect = 1e-16
 Identities = 66/239 (27%), Positives = 106/239 (44%), Gaps = 25/239 (10%)

Query: 58  PCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIML-G 116
           P ID+  GK  ++     Q   D  T             E A  ++E G    H + L G
Sbjct: 4   PAIDLKDGKCVRLY----QGDYDKKT------VYSDDPVEVAKKWEEAGAKWLHVVDLDG 53

Query: 117 A-DPLSK-AAAIEALHAYPGG-LQVGGGINSDNSL-SYIEEGATHVIVTSYVFNNGQMDL 172
           A          IE +    G  +QVGGGI S   +   ++ G + VI+ +    N ++  
Sbjct: 54  AKGGEPVNLELIEEIVKAVGIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAVKNPEL-- 111

Query: 173 ERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLV 232
             +K+L++  G +R+V+ L  +  DGK A  T  W + S+V L+E    F        + 
Sbjct: 112 --VKELLKEYGGERIVVGLDAK--DGKVA--TKGWLETSEVSLEELAKRFEELGVKAIIY 165

Query: 233 HGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL 291
             +  +G   G + EL   L   + IPV  +GGV+++ D++ +K  G+    V VG AL
Sbjct: 166 TDISRDGTLSGPNFELYKELAAATGIPVIASGGVSSLDDIKALKELGV--AGVIVGKAL 222

Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''- phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. Length = 234

>gnl|CDD|232779 TIGR00007, TIGR00007, phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase

 Score = 71.1 bits (175), Expect = 2e-14
 Identities = 63/244 (25%), Positives = 102/244 (41%), Gaps = 35/244 (14%)

Query: 58  PCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIML-G 116
           P IDI  GK  ++     Q   D  T        D    E A  ++E+G    H + L G
Sbjct: 3   PAIDIKDGKCVRLY----QGDYDKET-----VYGD-DPVEAAKKWEEEGAERIHVVDLDG 52

Query: 117 A--------DPLSKAAAIEALHAYPGGLQVGGGINSDNSL-SYIEEGATHVIVTSYVFNN 167
           A          + K      +      +QVGGGI S   +   ++ G   VI+ +    N
Sbjct: 53  AKEGGPVNLPVIKKIVRETGVP-----VQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVEN 107

Query: 168 GQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYA 227
                + +K+L++  G +R+V+ L  R   G+  +    W + S+V L+E          
Sbjct: 108 ----PDLVKELLKEYGPERIVVSLDAR--GGE--VAVKGWLEKSEVSLEELAKRLEELGL 159

Query: 228 DEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTV 287
           +  +   +  +G   G + EL   L K   +PV  +GGV+++ DL  +K  G+    V V
Sbjct: 160 EGIIYTDISRDGTLSGPNFELTKELVKAVNVPVIASGGVSSIDDLIALKKLGVY--GVIV 217

Query: 288 GSAL 291
           G AL
Sbjct: 218 GKAL 221

This protein family consists of HisA, phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, the enzyme catalyzing the fourth step in histidine biosynthesis. It is closely related to the enzyme HisF for the sixth step. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317) [Amino acid biosynthesis, Histidine family]. Length = 230

>gnl|CDD|184165 PRK13585, PRK13585, 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

 Score = 65.3 bits (160), Expect = 2e-12
 Identities = 74/248 (29%), Positives = 112/248 (45%), Gaps = 43/248 (17%)

Query: 58  PCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIML-G 116
           P +D+  GK  Q+V        + GT+ V+ +      A+    + + G    H + L G
Sbjct: 7   PAVDMKGGKCVQLVQG------EPGTETVS-YGDPVEVAK---RWVDAGAETLHLVDLDG 56

Query: 117 ADPLSK--AAAIEA-LHAYPGGLQVGGGINS-DNSLSYIEEGATHVIV-TSYVFNNGQMD 171
           A    +  A AIE  + A    +Q+GGGI S +++ S ++ G   VI+ T+ V N     
Sbjct: 57  AFEGERKNAEAIEKIIEAVGVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAVENP---- 112

Query: 172 LERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFL 231
            E +++L    G +R+++ L    KDG+  +V   W + +               A  F 
Sbjct: 113 -EIVRELSEEFGSERVMVSLDA--KDGE--VVIKGWTEKTG-------YTP-VEAAKRFE 159

Query: 232 VHG--------VDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRV 283
             G        VDVEG   G++ E V  L     IPV  +GGVTT+ DL  +K AG    
Sbjct: 160 ELGAGSILFTNVDVEGLLEGVNTEPVKELVDSVDIPVIASGGVTTLDDLRALKEAGAA-- 217

Query: 284 DVTVGSAL 291
            V VGSAL
Sbjct: 218 GVVVGSAL 225

Length = 241

>gnl|CDD|132611 TIGR03572, WbuZ, glycosyl amidation-associated protein WbuZ

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 38/162 (23%), Positives = 67/162 (41%), Gaps = 11/162 (6%)

Query: 136 LQVGGGINSDNSLSYI-EEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCR 194
           L VGGGI S      +   GA  V + +    N  +    +++  R  G Q +V+ +  +
Sbjct: 77  LTVGGGIRSLEDAKKLLSLGADKVSINTAALENPDL----IEEAARRFGSQCVVVSIDVK 132

Query: 195 KK--DGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALL 252
           K+     Y + +D  ++ +     E   +     A E L++ +D +G   G D EL+  +
Sbjct: 133 KELDGSDYKVYSDNGRRATGRDPVEWAREAEQLGAGEILLNSIDRDGTMKGYDLELIKTV 192

Query: 253 GKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIF 294
                IPV   GG  ++ DL    V        +  +A  +F
Sbjct: 193 SDAVSIPVIALGGAGSLDDL----VEVALEAGASAVAAASLF 230

This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli , IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to proteins provide ammonium ions to the amidotransferase when these are in low concentration. WbuY (like HisH) is proposed to act as a glutaminase to release ammonium. In histidine biosynthesis this is also dispensible in the presence of exogenous ammonium ion. HisH and HisF form a complex such that the ammonium ion is passed directly to HisF where it is used in an amidation reaction causing a subsequent cleavage and cyclization. In the case of WbuYZ, the ammonium ion would be passed from WbuY to WbuZ. WbuZ, being non-essential and so similar to HisF that a sugar substrate is unlikely, would function instead as a amoonium channel to the WbuX protein which does the enzymatic work. Length = 232

>gnl|CDD|234891 PRK01033, PRK01033, imidazole glycerol phosphate synthase subunit HisF; Provisional

 Score = 50.3 bits (121), Expect = 3e-07
 Identities = 34/158 (21%), Positives = 63/158 (39%), Gaps = 10/158 (6%)

Query: 139 GGGINS-DNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKK- 196
           GGGI + + +      G   V + +    +  +    + +     G Q +V+ +  +K  
Sbjct: 80  GGGIKTLEQAKKIFSLGVEKVSINTAALEDPDL----ITEAAERFGSQSVVVSIDVKKNL 135

Query: 197 DGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYS 256
            GK+ + T    K       E   ++ A  A E L++ +D +G   G D EL+       
Sbjct: 136 GGKFDVYTHNGTKKLKKDPLELAKEYEALGAGEILLNSIDRDGTMKGYDLELLKSFRNAL 195

Query: 257 PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIF 294
            IP+   GG  ++ D+    V  I  +     +A  +F
Sbjct: 196 KIPLIALGGAGSLDDI----VEAILNLGADAAAAGSLF 229

Length = 258

>gnl|CDD|179108 PRK00748, PRK00748, 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated

 Score = 49.7 bits (120), Expect = 4e-07
 Identities = 52/178 (29%), Positives = 84/178 (47%), Gaps = 26/178 (14%)

Query: 123 AAAIEA-LHAYPGGLQVGGGINSDNSLS-YIEEGATHVIVTSYVFNNGQMDLERLKDLVR 180
              IEA + A    +QVGGGI S  ++   ++ G + VI+ +    N ++    +K+  +
Sbjct: 63  LELIEAIVKAVDIPVQVGGGIRSLETVEALLDAGVSRVIIGTAAVKNPEL----VKEACK 118

Query: 181 ------VVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHG 234
                 VVG     LD     +DGK A  TD W + S V  ++    F  +     +   
Sbjct: 119 KFPGKIVVG-----LDA----RDGKVA--TDGWLETSGVTAEDLAKRFEDAGVKAIIYTD 167

Query: 235 VDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVD-VTVGSAL 291
           +  +G   G + E    L    PIPV  +GGV+++ D++ +K  G+G V+ V VG AL
Sbjct: 168 ISRDGTLSGPNVEATRELAAAVPIPVIASGGVSSLDDIKALK--GLGAVEGVIVGRAL 223

Length = 233

>gnl|CDD|240082 cd04731, HisF, The cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

 Score = 46.7 bits (112), Expect = 4e-06
 Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 6/140 (4%)

Query: 136 LQVGGGINS-DNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCR 194
           L VGGGI S +++   +  GA  V + S    N ++    ++++ +  G Q +V+ +  +
Sbjct: 74  LTVGGGIRSLEDARRLLRAGADKVSINSAAVENPEL----IREIAKRFGSQCVVVSIDAK 129

Query: 195 KK-DGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLG 253
           ++ DG Y + T   +K + +   E   +     A E L+  +D +G K G D EL+  + 
Sbjct: 130 RRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGTKKGYDLELIRAVS 189

Query: 254 KYSPIPVTYAGGVTTMADLE 273
               IPV  +GG        
Sbjct: 190 SAVNIPVIASGGAGKPEHFV 209

Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4- carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. Length = 243

>gnl|CDD|237439 PRK13586, PRK13586, 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 35/149 (23%), Positives = 61/149 (40%), Gaps = 16/149 (10%)

Query: 136 LQVGGGINSDNSLS-YIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCR 194
           +QVGGGI         +      ++ ++ VF N  +      D+VR +G  R+++  S  
Sbjct: 76  IQVGGGIRDIEKAKRLLSLDVNALVFSTIVFTNFNL----FHDIVREIGSNRVLV--SID 129

Query: 195 KKDGKYAIVT---DRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVAL 251
             + K  ++    ++  +  D       L+ L       +   +  EG   GID  +   
Sbjct: 130 YDNTKRVLIRGWKEKSMEVIDGIKKVNELELLG-----IIFTYISNEGTTKGIDYNVKDY 184

Query: 252 LGKYSPIPVTYAGGVTTMADLEKIKVAGI 280
                 +   YAGGV++ ADLE +K  G 
Sbjct: 185 ARLIRGLK-EYAGGVSSDADLEYLKNVGF 212

Length = 232

>gnl|CDD|167709 PRK04128, PRK04128, 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 45/157 (28%), Positives = 76/157 (48%), Gaps = 19/157 (12%)

Query: 136 LQVGGGINSDNSLSYIEE-GATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCR 194
           +QVGGG+ +  S+    E G  +VI+ +  F     DLE L+ +        + LD+   
Sbjct: 76  VQVGGGLRTYESIKDAYEIGVENVIIGTKAF-----DLEFLEKVTSEFEGITVSLDV--- 127

Query: 195 KKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGK 254
            K G+  I    W + S + +++   + L +Y + F+   ++ +G   GI+ E+    G 
Sbjct: 128 -KGGR--IAVKGWLEESSIKVED-AYEMLKNYVNRFIYTSIERDGTLTGIE-EIERFWGD 182

Query: 255 YSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL 291
              I   YAGGV++  D+   K+A IG   V +G AL
Sbjct: 183 EEFI---YAGGVSSAEDV--KKLAEIGFSGVIIGKAL 214

Length = 228

>gnl|CDD|233108 TIGR00735, hisF, imidazoleglycerol phosphate synthase, cyclase subunit

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 57/235 (24%), Positives = 92/235 (39%), Gaps = 44/235 (18%)

Query: 53  AVRFRPCIDIHKGKV-KQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDG----- 106
           A R  PC+D+  G+V K +    L+D+ D                E A  Y E+G     
Sbjct: 3   AKRIIPCLDVRDGRVVKGVQFLNLRDAGD--------------PVELAQRYDEEGADELV 48

Query: 107 ---LTGGH---AIMLGADPLSKAAAIEALHAYPGGLQVGGGINS-DNSLSYIEEGATHV- 158
              +T        M+  D + + A    +   P  L VGGGI S ++    +  GA  V 
Sbjct: 49  FLDITASSEGRTTMI--DVVERTAETVFI---P--LTVGGGIKSIEDVDKLLRAGADKVS 101

Query: 159 IVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKK----DGKYAIVTDRWQKFSDVY 214
           I T+ V N      E + +L    G Q +V+ +  ++        Y +     ++ + + 
Sbjct: 102 INTAAVKNP-----ELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLD 156

Query: 215 LDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTM 269
             E   +     A E L+  +D +G K G D EL   + +   IPV  +GG    
Sbjct: 157 AVEWAKEVEKLGAGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKP 211

[Amino acid biosynthesis, Histidine family]. Length = 254

>gnl|CDD|172156 PRK13587, PRK13587, 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 37/151 (24%), Positives = 68/151 (45%), Gaps = 20/151 (13%)

Query: 136 LQVGGGINSDNSL-SYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVV-GKQRLVLDLSC 193
           ++VGGGI + + +  Y   G  + IV +     G  D + LK++     G+  L +D   
Sbjct: 79  IEVGGGIRTKSQIMDYFAAGINYCIVGT----KGIQDTDWLKEMAHTFPGRIYLSVDAYG 134

Query: 194 RKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFL--VHGVDV--EGKKLGIDDELV 249
                   I  + W++  D  L+  +  F+   +D  L  +   D+  +GK  G + EL 
Sbjct: 135 ED------IKVNGWEE--DTELN--LFSFVRQLSDIPLGGIIYTDIAKDGKMSGPNFELT 184

Query: 250 ALLGKYSPIPVTYAGGVTTMADLEKIKVAGI 280
             L K + IPV  +GG+    D++++    +
Sbjct: 185 GQLVKATTIPVIASGGIRHQQDIQRLASLNV 215

Length = 234

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	316
PLN02446	262	(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy	100.0
COG0106	241	HisA Phosphoribosylformimino-5-aminoimidazole carb	100.0
TIGR02129	253	hisA_euk phosphoribosylformimino-5-aminoimidazole	100.0
PRK14114	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	100.0
PF00977	229	His_biosynth: Histidine biosynthesis protein; Inte	100.0
PRK13586	232	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	100.0
TIGR01919	243	hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy	100.0
COG0107	256	HisF Imidazoleglycerol-phosphate synthase [Amino a	100.0
PRK13587	234	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	100.0
PRK14024	241	phosphoribosyl isomerase A; Provisional	100.0
cd04723	233	HisA_HisF Phosphoribosylformimino-5-aminoimidazole	100.0
PRK04128	228	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	100.0
PRK02083	253	imidazole glycerol phosphate synthase subunit HisF	100.0
TIGR00735	254	hisF imidazoleglycerol phosphate synthase, cyclase	100.0
PRK01033	258	imidazole glycerol phosphate synthase subunit HisF	100.0
PRK13585	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	100.0
PLN02617	538	imidazole glycerol phosphate synthase hisHF	100.0
TIGR00734	221	hisAF_rel hisA/hisF family protein. This alignment	100.0
PRK00748	233	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	100.0
TIGR00007	230	phosphoribosylformimino-5-aminoimidazole carboxami	100.0
cd04732	234	HisA HisA. Phosphoribosylformimino-5-aminoimidazol	100.0
cd04731	243	HisF The cyclase subunit of imidazoleglycerol phos	100.0
TIGR03572	232	WbuZ glycosyl amidation-associated protein WbuZ. T	100.0
KOG3055	263	consensus Phosphoribosylformimino-5-aminoimidazole	100.0
COG1411	229	Uncharacterized protein related to proFAR isomeras	99.97
KOG0623	541	consensus Glutamine amidotransferase/cyclase [Amin	99.92
cd00331	217	IGPS Indole-3-glycerol phosphate synthase (IGPS);	99.87
TIGR01768	223	GGGP-family geranylgeranylglyceryl phosphate synth	99.74
cd02812	219	PcrB_like PcrB_like proteins. One member of this f	99.72
PF01884	230	PcrB: PcrB family; InterPro: IPR008205 This entry	99.71
PRK04169	232	geranylgeranylglyceryl phosphate synthase-like pro	99.67
COG0042	323	tRNA-dihydrouridine synthase [Translation, ribosom	99.64
PRK01033	258	imidazole glycerol phosphate synthase subunit HisF	99.63
PRK10415	321	tRNA-dihydrouridine synthase B; Provisional	99.63
cd04731	243	HisF The cyclase subunit of imidazoleglycerol phos	99.62
TIGR01769	205	GGGP geranylgeranylglyceryl phosphate synthase. Th	99.62
TIGR00735	254	hisF imidazoleglycerol phosphate synthase, cyclase	99.55
TIGR03572	232	WbuZ glycosyl amidation-associated protein WbuZ. T	99.55
PRK04128	228	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	99.54
TIGR00737	319	nifR3_yhdG putative TIM-barrel protein, nifR3 fami	99.51
PRK00748	233	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	99.51
PRK02083	253	imidazole glycerol phosphate synthase subunit HisF	99.5
PRK01130	221	N-acetylmannosamine-6-phosphate 2-epimerase; Provi	99.5
cd02801	231	DUS_like_FMN Dihydrouridine synthase-like (DUS-lik	99.48
PRK10550	312	tRNA-dihydrouridine synthase C; Provisional	99.46
COG0107	256	HisF Imidazoleglycerol-phosphate synthase [Amino a	99.45
PF01207	309	Dus: Dihydrouridine synthase (Dus); InterPro: IPR0	99.44
COG1646	240	Predicted phosphate-binding enzymes, TIM-barrel fo	99.44
PRK11815	333	tRNA-dihydrouridine synthase A; Provisional	99.42
TIGR00742	318	yjbN tRNA dihydrouridine synthase A. Members of th	99.39
PF04131	192	NanE: Putative N-acetylmannosamine-6-phosphate epi	99.36
KOG2335	358	consensus tRNA-dihydrouridine synthase [Translatio	99.35
PRK14024	241	phosphoribosyl isomerase A; Provisional	99.34
COG0106	241	HisA Phosphoribosylformimino-5-aminoimidazole carb	99.33
TIGR00007	230	phosphoribosylformimino-5-aminoimidazole carboxami	99.3
cd04732	234	HisA HisA. Phosphoribosylformimino-5-aminoimidazol	99.27
PRK13587	234	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	99.26
PF00977	229	His_biosynth: Histidine biosynthesis protein; Inte	99.25
cd04729	219	NanE N-acetylmannosamine-6-phosphate epimerase (Na	99.24
TIGR00736	231	nifR3_rel_arch TIM-barrel protein, putative. Membe	99.24
PRK00278	260	trpC indole-3-glycerol-phosphate synthase; Reviewe	99.24
PRK14114	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	99.22
PRK13586	232	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	99.22
PLN02446	262	(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy	99.21
cd04727	283	pdxS PdxS is a subunit of the pyridoxal 5'-phospha	99.19
cd04723	233	HisA_HisF Phosphoribosylformimino-5-aminoimidazole	99.19
PRK13585	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	99.14
TIGR01919	243	hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy	99.12
TIGR00343	287	pyridoxal 5'-phosphate synthase, synthase subunit	99.11
COG3010	229	NanE Putative N-acetylmannosamine-6-phosphate epim	99.1
PRK04180	293	pyridoxal biosynthesis lyase PdxS; Provisional	99.09
TIGR02129	253	hisA_euk phosphoribosylformimino-5-aminoimidazole	99.05
cd04722	200	TIM_phosphate_binding TIM barrel proteins share a	99.03
cd02940	299	DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM	98.97
TIGR00734	221	hisAF_rel hisA/hisF family protein. This alignment	98.97
PLN02617	538	imidazole glycerol phosphate synthase hisHF	98.97
cd04740	296	DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c	98.96
cd02911	233	arch_FMN Archeal FMN-binding domain. This family o	98.92
PRK07259	301	dihydroorotate dehydrogenase 1B; Reviewed	98.91
PRK05458	326	guanosine 5'-monophosphate oxidoreductase; Provisi	98.86
TIGR01163	210	rpe ribulose-phosphate 3-epimerase. This family co	98.86
TIGR03151	307	enACPred_II putative enoyl-(acyl-carrier-protein)	98.86
PLN02274	505	inosine-5'-monophosphate dehydrogenase	98.85
PRK08318	420	dihydropyrimidine dehydrogenase subunit B; Validat	98.83
TIGR01037	300	pyrD_sub1_fam dihydroorotate dehydrogenase (subfam	98.81
cd04730	236	NPD_like 2-Nitropropane dioxygenase (NPD), one of	98.77
cd02810	289	DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD)	98.75
PRK00043	212	thiE thiamine-phosphate pyrophosphorylase; Reviewe	98.75
PRK06843	404	inosine 5-monophosphate dehydrogenase; Validated	98.74
PRK09140	206	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R	98.72
cd02803	327	OYE_like_FMN_family Old yellow enzyme (OYE)-like F	98.68
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	98.66
PRK13957	247	indole-3-glycerol-phosphate synthase; Provisional	98.65
cd00429	211	RPE Ribulose-5-phosphate 3-epimerase (RPE). This e	98.65
cd04741	294	DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c	98.64
cd00381	325	IMPDH IMPDH: The catalytic domain of the inosine m	98.63
PRK07695	201	transcriptional regulator TenI; Provisional	98.62
PRK08883	220	ribulose-phosphate 3-epimerase; Provisional	98.61
cd04739	325	DHOD_like Dihydroorotate dehydrogenase (DHOD) like	98.61
cd00564	196	TMP_TenI Thiamine monophosphate synthase (TMP synt	98.61
cd00452	190	KDPG_aldolase KDPG and KHG aldolase. This family b	98.6
PF00218	254	IGPS: Indole-3-glycerol phosphate synthase; InterP	98.59
cd04738	327	DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl	98.59
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	98.58
PRK07565	334	dihydroorotate dehydrogenase 2; Reviewed	98.56
cd04733	338	OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN	98.56
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	98.55
PRK05286	344	dihydroorotate dehydrogenase 2; Reviewed	98.54
TIGR01306	321	GMP_reduct_2 guanosine monophosphate reductase, ba	98.53
cd04734	343	OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN	98.5
cd02809	299	alpha_hydroxyacid_oxid_FMN Family of homologous FM	98.47
cd04726	202	KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl	98.47
cd04728	248	ThiG Thiazole synthase (ThiG) is the tetrameric en	98.45
PRK04169	232	geranylgeranylglyceryl phosphate synthase-like pro	98.45
cd04724	242	Tryptophan_synthase_alpha Ttryptophan synthase (TR	98.44
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	98.44
cd02932	336	OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN	98.42
COG0134	254	TrpC Indole-3-glycerol phosphate synthase [Amino a	98.41
PRK13523	337	NADPH dehydrogenase NamA; Provisional	98.41
cd02933	338	OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind	98.41
PRK07028	430	bifunctional hexulose-6-phosphate synthase/ribonuc	98.41
PLN02334	229	ribulose-phosphate 3-epimerase	98.4
PRK05581	220	ribulose-phosphate 3-epimerase; Validated	98.4
PRK00208	250	thiG thiazole synthase; Reviewed	98.39
KOG2333	614	consensus Uncharacterized conserved protein [Gener	98.39
TIGR00693	196	thiE thiamine-phosphate pyrophosphorylase. This mo	98.39
TIGR01769	205	GGGP geranylgeranylglyceryl phosphate synthase. Th	98.39
TIGR03128	206	RuMP_HxlA 3-hexulose-6-phosphate synthase. at the	98.37
PF03437	254	BtpA: BtpA family; InterPro: IPR005137 Photosystem	98.37
PLN02460	338	indole-3-glycerol-phosphate synthase	98.35
cd02812	219	PcrB_like PcrB_like proteins. One member of this f	98.34
TIGR00262	256	trpA tryptophan synthase, alpha subunit. Tryptopha	98.31
TIGR00259	257	thylakoid_BtpA membrane complex biogenesis protein	98.3
TIGR01768	223	GGGP-family geranylgeranylglyceryl phosphate synth	98.29
PF00478	352	IMPDH: IMP dehydrogenase / GMP reductase domain; I	98.28
PRK13802	695	bifunctional indole-3-glycerol phosphate synthase/	98.28
cd02931	382	ER_like_FMN Enoate reductase (ER)-like FMN-binding	98.26
COG0167	310	PyrD Dihydroorotate dehydrogenase [Nucleotide tran	98.25
PRK04302	223	triosephosphate isomerase; Provisional	98.25
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	98.24
PF02581	180	TMP-TENI: Thiamine monophosphate synthase/TENI; In	98.23
PRK08745	223	ribulose-phosphate 3-epimerase; Provisional	98.23
PRK13125	244	trpA tryptophan synthase subunit alpha; Provisiona	98.23
PRK07455	187	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	98.2
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	98.19
PRK08649	368	inosine 5-monophosphate dehydrogenase; Validated	98.19
cd00405	203	PRAI Phosphoribosylanthranilate isomerase (PRAI) c	98.18
PRK05096	346	guanosine 5'-monophosphate oxidoreductase; Provisi	98.18
PRK08005	210	epimerase; Validated	98.17
PF03060	330	NMO: Nitronate monooxygenase; InterPro: IPR004136	98.17
TIGR01305	343	GMP_reduct_1 guanosine monophosphate reductase, eu	98.16
COG1411	229	Uncharacterized protein related to proFAR isomeras	98.14
cd02930	353	DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin	98.14
TIGR01304	369	IMP_DH_rel_2 IMP dehydrogenase family protein. Thi	98.13
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	98.13
PRK02615	347	thiamine-phosphate pyrophosphorylase; Provisional	98.13
PLN02826	409	dihydroorotate dehydrogenase	98.06
COG0269	217	SgbH 3-hexulose-6-phosphate synthase and related p	98.05
TIGR02708	367	L_lactate_ox L-lactate oxidase. Members of this pr	98.04
CHL00200	263	trpA tryptophan synthase alpha subunit; Provisiona	98.03
PRK13111	258	trpA tryptophan synthase subunit alpha; Provisiona	98.03
cd04735	353	OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN	98.03
PRK08091	228	ribulose-phosphate 3-epimerase; Validated	98.02
PRK06512	221	thiamine-phosphate pyrophosphorylase; Provisional	98.01
PRK13307	391	bifunctional formaldehyde-activating enzyme/3-hexu	98.01
TIGR01304	369	IMP_DH_rel_2 IMP dehydrogenase family protein. Thi	98.01
COG0352	211	ThiE Thiamine monophosphate synthase [Coenzyme met	98.0
PLN02591	250	tryptophan synthase	97.99
PRK08649	368	inosine 5-monophosphate dehydrogenase; Validated	97.99
PRK09427	454	bifunctional indole-3-glycerol phosphate synthase/	97.96
cd02929	370	TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH)	97.95
cd04747	361	OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN	97.95
PRK06552	213	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	97.95
PRK05718	212	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	97.92
KOG2334	477	consensus tRNA-dihydrouridine synthase [Translatio	97.89
PF05690	247	ThiG: Thiazole biosynthesis protein ThiG; InterPro	97.89
CHL00162	267	thiG thiamin biosynthesis protein G; Validated	97.89
PF03932	201	CutC: CutC family; InterPro: IPR005627 Copper tran	97.88
cd00958	235	DhnA Class I fructose-1,6-bisphosphate (FBP) aldol	97.87
COG0434	263	SgcQ Predicted TIM-barrel enzyme [General function	97.86
cd04737	351	LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d	97.86
TIGR01036	335	pyrD_sub2 dihydroorotate dehydrogenase, subfamily	97.85
COG2070	336	Dioxygenases related to 2-nitropropane dioxygenase	97.83
PRK02506	310	dihydroorotate dehydrogenase 1A; Reviewed	97.83
cd00945	201	Aldolase_Class_I Class I aldolases. The class I al	97.82
PRK14057	254	epimerase; Provisional	97.82
PRK09722	229	allulose-6-phosphate 3-epimerase; Provisional	97.81
TIGR01182	204	eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho	97.8
PLN02495	385	oxidoreductase, acting on the CH-CH group of donor	97.77
PTZ00170	228	D-ribulose-5-phosphate 3-epimerase; Provisional	97.75
COG0036	220	Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate	97.73
cd04736	361	MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin	97.72
PRK03512	211	thiamine-phosphate pyrophosphorylase; Provisional	97.71
PRK10605	362	N-ethylmaleimide reductase; Provisional	97.7
cd03319	316	L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase cat	97.7
PF01884	230	PcrB: PcrB family; InterPro: IPR008205 This entry	97.7
PF00290	259	Trp_syntA: Tryptophan synthase alpha chain; InterP	97.68
PRK11572	248	copper homeostasis protein CutC; Provisional	97.66
PLN02898	502	HMP-P kinase/thiamin-monophosphate pyrophosphoryla	97.66
PF00834	201	Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam	97.65
cd04743	320	NPD_PKS 2-Nitropropane dioxygenase (NPD)-like doma	97.65
COG0159	265	TrpA Tryptophan synthase alpha chain [Amino acid t	97.64
cd04728	248	ThiG Thiazole synthase (ThiG) is the tetrameric en	97.59
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	97.57
cd04740	296	DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c	97.55
PRK08999	312	hypothetical protein; Provisional	97.54
cd02801	231	DUS_like_FMN Dihydrouridine synthase-like (DUS-lik	97.54
cd02811	326	IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di	97.54
PRK00208	250	thiG thiazole synthase; Reviewed	97.52
PRK11840	326	bifunctional sulfur carrier protein/thiazole synth	97.5
COG2022	262	ThiG Uncharacterized enzyme of thiazole biosynthes	97.47
PRK07259	301	dihydroorotate dehydrogenase 1B; Reviewed	97.47
TIGR02151	333	IPP_isom_2 isopentenyl-diphosphate delta-isomerase	97.46
PRK13957	247	indole-3-glycerol-phosphate synthase; Provisional	97.42
TIGR01037	300	pyrD_sub1_fam dihydroorotate dehydrogenase (subfam	97.42
PF01180	295	DHO_dh: Dihydroorotate dehydrogenase; InterPro: IP	97.4
PLN02535	364	glycolate oxidase	97.4
PRK06015	201	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	97.39
cd03315	265	MLE_like Muconate lactonizing enzyme (MLE) like su	97.38
PRK10415	321	tRNA-dihydrouridine synthase B; Provisional	97.37
PRK07998	283	gatY putative fructose-1,6-bisphosphate aldolase;	97.36
cd02911	233	arch_FMN Archeal FMN-binding domain. This family o	97.34
PRK07114	222	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	97.33
PRK08185	283	hypothetical protein; Provisional	97.3
PRK05848	273	nicotinate-nucleotide pyrophosphorylase; Provision	97.27
cd03332	383	LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin	97.21
cd02803	327	OYE_like_FMN_family Old yellow enzyme (OYE)-like F	97.2
TIGR00262	256	trpA tryptophan synthase, alpha subunit. Tryptopha	97.2
PRK07226	267	fructose-bisphosphate aldolase; Provisional	97.2
cd00331	217	IGPS Indole-3-glycerol phosphate synthase (IGPS);	97.19
PF04481	242	DUF561: Protein of unknown function (DUF561); Inte	97.18
TIGR00737	319	nifR3_yhdG putative TIM-barrel protein, nifR3 fami	97.17
TIGR01859	282	fruc_bis_ald_ fructose-1,6-bisphosphate aldolase,	97.15
TIGR01949	258	AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep	97.14
cd02922	344	FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom	97.13
PRK05437	352	isopentenyl pyrophosphate isomerase; Provisional	97.13
CHL00162	267	thiG thiamin biosynthesis protein G; Validated	97.12
PF03437	254	BtpA: BtpA family; InterPro: IPR005137 Photosystem	97.1
cd02940	299	DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM	97.07
TIGR00259	257	thylakoid_BtpA membrane complex biogenesis protein	97.06
PF01081	196	Aldolase: KDPG and KHG aldolase; InterPro: IPR0008	97.05
PRK01130	221	N-acetylmannosamine-6-phosphate 2-epimerase; Provi	97.04
CHL00200	263	trpA tryptophan synthase alpha subunit; Provisiona	97.02
PRK12290	437	thiE thiamine-phosphate pyrophosphorylase; Reviewe	97.02
PRK08883	220	ribulose-phosphate 3-epimerase; Provisional	97.02
COG1902	363	NemA NADH:flavin oxidoreductases, Old Yellow Enzym	97.02
KOG3111	224	consensus D-ribulose-5-phosphate 3-epimerase [Carb	97.0
cd04742	418	NPD_FabD 2-Nitropropane dioxygenase (NPD)-like dom	97.0
TIGR00736	231	nifR3_rel_arch TIM-barrel protein, putative. Membe	96.99
PRK07709	285	fructose-bisphosphate aldolase; Provisional	96.96
PRK06801	286	hypothetical protein; Provisional	96.96
PRK11197	381	lldD L-lactate dehydrogenase; Provisional	96.96
cd04738	327	DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl	96.94
cd04739	325	DHOD_like Dihydroorotate dehydrogenase (DHOD) like	96.91
PLN02979	366	glycolate oxidase	96.91
KOG0623	541	consensus Glutamine amidotransferase/cyclase [Amin	96.89
cd02810	289	DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD)	96.89
KOG4201	289	consensus Anthranilate synthase component II [Amin	96.89
cd04726	202	KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl	96.87
PRK09517	755	multifunctional thiamine-phosphate pyrophosphoryla	96.82
COG1646	240	Predicted phosphate-binding enzymes, TIM-barrel fo	96.82
PRK08610	286	fructose-bisphosphate aldolase; Reviewed	96.79
PRK13111	258	trpA tryptophan synthase subunit alpha; Provisiona	96.79
cd00377	243	ICL_PEPM Members of the ICL/PEPM enzyme family cat	96.77
PRK12738	286	kbaY tagatose-bisphosphate aldolase; Reviewed	96.75
TIGR02814	444	pfaD_fam PfaD family protein. The protein PfaD is	96.73
PLN02334	229	ribulose-phosphate 3-epimerase	96.71
PRK05286	344	dihydroorotate dehydrogenase 2; Reviewed	96.71
cd04724	242	Tryptophan_synthase_alpha Ttryptophan synthase (TR	96.71
COG0434	263	SgcQ Predicted TIM-barrel enzyme [General function	96.7
PRK07565	334	dihydroorotate dehydrogenase 2; Reviewed	96.69
PLN02591	250	tryptophan synthase	96.68
PRK06806	281	fructose-bisphosphate aldolase; Provisional	96.68
PF00724	341	Oxidored_FMN: NADH:flavin oxidoreductase / NADH ox	96.66
cd00947	276	TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) a	96.66
PF01070	356	FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR	96.65
cd03316	357	MR_like Mandelate racemase (MR)-like subfamily of	96.64
PF05690	247	ThiG: Thiazole biosynthesis protein ThiG; InterPro	96.62
TIGR01858	282	tag_bisphos_ald class II aldolase, tagatose bispho	96.62
PLN02826	409	dihydroorotate dehydrogenase	96.62
PRK08091	228	ribulose-phosphate 3-epimerase; Validated	96.61
PRK11320	292	prpB 2-methylisocitrate lyase; Provisional	96.56
PRK09195	284	gatY tagatose-bisphosphate aldolase; Reviewed	96.55
cd00429	211	RPE Ribulose-5-phosphate 3-epimerase (RPE). This e	96.55
cd04730	236	NPD_like 2-Nitropropane dioxygenase (NPD), one of	96.55
PLN02493	367	probable peroxisomal (S)-2-hydroxy-acid oxidase	96.55
TIGR00167	288	cbbA ketose-bisphosphate aldolases. fructose-bisph	96.52
PRK07084	321	fructose-bisphosphate aldolase; Provisional	96.51
KOG1606	296	consensus Stationary phase-induced protein, SOR/SN	96.48
cd04729	219	NanE N-acetylmannosamine-6-phosphate epimerase (Na	96.46
PRK12857	284	fructose-1,6-bisphosphate aldolase; Reviewed	96.45
COG2022	262	ThiG Uncharacterized enzyme of thiazole biosynthes	96.44
PRK11815	333	tRNA-dihydrouridine synthase A; Provisional	96.43
cd02809	299	alpha_hydroxyacid_oxid_FMN Family of homologous FM	96.43
PRK07315	293	fructose-bisphosphate aldolase; Provisional	96.42
COG0036	220	Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate	96.38
PF01791	236	DeoC: DeoC/LacD family aldolase; InterPro: IPR0029	96.35
PRK05835	307	fructose-bisphosphate aldolase; Provisional	96.32
cd01573	272	modD_like ModD; Quinolinate phosphoribosyl transfe	96.3
PRK08745	223	ribulose-phosphate 3-epimerase; Provisional	96.27
TIGR01163	210	rpe ribulose-phosphate 3-epimerase. This family co	96.27
PRK08005	210	epimerase; Validated	96.26
PRK14057	254	epimerase; Provisional	96.25
PRK10550	312	tRNA-dihydrouridine synthase C; Provisional	96.23
TIGR03151	307	enACPred_II putative enoyl-(acyl-carrier-protein)	96.23
PRK00230	230	orotidine 5'-phosphate decarboxylase; Reviewed	96.22
PRK12737	284	gatY tagatose-bisphosphate aldolase; Reviewed	96.21
cd02932	336	OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN	96.19
PRK05581	220	ribulose-phosphate 3-epimerase; Validated	96.16
PRK08072	277	nicotinate-nucleotide pyrophosphorylase; Provision	96.14
PRK13125	244	trpA tryptophan synthase subunit alpha; Provisiona	96.13
TIGR01521	347	FruBisAldo_II_B fructose-bisphosphate aldolase, cl	96.13
PF01116	287	F_bP_aldolase: Fructose-bisphosphate aldolase clas	96.13
COG0214	296	SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme meta	96.12
PRK08318	420	dihydropyrimidine dehydrogenase subunit B; Validat	96.11
cd04737	351	LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d	96.09
PRK00507	221	deoxyribose-phosphate aldolase; Provisional	96.09
cd01572	268	QPRTase Quinolinate phosphoribosyl transferase (QA	96.08
PRK11840	326	bifunctional sulfur carrier protein/thiazole synth	96.07
cd04741	294	DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c	96.04
PRK13399	347	fructose-1,6-bisphosphate aldolase; Provisional	96.01
PRK07428	288	nicotinate-nucleotide pyrophosphorylase; Provision	95.99
PRK07028	430	bifunctional hexulose-6-phosphate synthase/ribonuc	95.99
PRK05742	277	nicotinate-nucleotide pyrophosphorylase; Provision	95.96
cd02808	392	GltS_FMN Glutamate synthase (GltS) FMN-binding dom	95.96
PLN02535	364	glycolate oxidase	95.94
PRK06852	304	aldolase; Validated	95.93
TIGR01036	335	pyrD_sub2 dihydroorotate dehydrogenase, subfamily	95.92
cd03321	355	mandelate_racemase Mandelate racemase (MR) catalyz	95.91
PRK13813	215	orotidine 5'-phosphate decarboxylase; Provisional	95.91
cd00564	196	TMP_TenI Thiamine monophosphate synthase (TMP synt	95.9
PRK00043	212	thiE thiamine-phosphate pyrophosphorylase; Reviewe	95.89
cd04734	343	OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN	95.89
PLN02411	391	12-oxophytodienoate reductase	95.84
TIGR00078	265	nadC nicotinate-nucleotide pyrophosphorylase. Syno	95.82
PRK04302	223	triosephosphate isomerase; Provisional	95.79
TIGR02317	285	prpB methylisocitrate lyase. Members of this famil	95.75
cd02922	344	FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom	95.61
PRK13307	391	bifunctional formaldehyde-activating enzyme/3-hexu	95.6
PRK09196	347	fructose-1,6-bisphosphate aldolase; Reviewed	95.5
TIGR02151	333	IPP_isom_2 isopentenyl-diphosphate delta-isomerase	95.47
cd02930	353	DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin	95.45
TIGR02319	294	CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos	95.43
PRK14567	253	triosephosphate isomerase; Provisional	95.41
TIGR00742	318	yjbN tRNA dihydrouridine synthase A. Members of th	95.41
PRK10605	362	N-ethylmaleimide reductase; Provisional	95.39
cd04736	361	MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin	95.37
COG3142	241	CutC Uncharacterized protein involved in copper re	95.35
cd02933	338	OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind	95.31
TIGR03128	206	RuMP_HxlA 3-hexulose-6-phosphate synthase. at the	95.28
cd04733	338	OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN	95.22
cd04735	353	OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN	95.22
COG0167	310	PyrD Dihydroorotate dehydrogenase [Nucleotide tran	95.21
PRK13523	337	NADPH dehydrogenase NamA; Provisional	95.21
PLN02274	505	inosine-5'-monophosphate dehydrogenase	95.21
PRK09722	229	allulose-6-phosphate 3-epimerase; Provisional	95.2
PF04131	192	NanE: Putative N-acetylmannosamine-6-phosphate epi	95.2
PRK06843	404	inosine 5-monophosphate dehydrogenase; Validated	95.18
PRK15452	443	putative protease; Provisional	95.18
cd00959	203	DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of	95.15
cd02931	382	ER_like_FMN Enoate reductase (ER)-like FMN-binding	95.14
PRK05096	346	guanosine 5'-monophosphate oxidoreductase; Provisi	95.12
TIGR01305	343	GMP_reduct_1 guanosine monophosphate reductase, eu	95.12
TIGR02708	367	L_lactate_ox L-lactate oxidase. Members of this pr	95.12
COG2513	289	PrpB PEP phosphonomutase and related enzymes [Carb	95.12
PTZ00333	255	triosephosphate isomerase; Provisional	95.09
PTZ00170	228	D-ribulose-5-phosphate 3-epimerase; Provisional	95.06
PRK05458	326	guanosine 5'-monophosphate oxidoreductase; Provisi	95.04
PRK09250	348	fructose-bisphosphate aldolase; Provisional	95.04
cd03329	368	MR_like_4 Mandelate racemase (MR)-like subfamily o	94.98
cd01568	269	QPRTase_NadC Quinolinate phosphoribosyl transferas	94.98
PF00290	259	Trp_syntA: Tryptophan synthase alpha chain; InterP	94.96
KOG0538	363	consensus Glycolate oxidase [Energy production and	94.94
TIGR01306	321	GMP_reduct_2 guanosine monophosphate reductase, ba	94.94
PF00834	201	Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam	94.93
KOG1436	398	consensus Dihydroorotate dehydrogenase [Nucleotide	94.87
PRK05848	273	nicotinate-nucleotide pyrophosphorylase; Provision	94.87
COG1304	360	idi Isopentenyl diphosphate isomerase (BS_ypgA, MT	94.83
PRK08227	264	autoinducer 2 aldolase; Validated	94.79
cd00311	242	TIM Triosephosphate isomerase (TIM) is a glycolyti	94.77
TIGR02090	363	LEU1_arch isopropylmalate/citramalate/homocitrate	94.77
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	94.75
cd02811	326	IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di	94.73
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	94.67
COG0159	265	TrpA Tryptophan synthase alpha chain [Amino acid t	94.64
cd04722	200	TIM_phosphate_binding TIM barrel proteins share a	94.64
PF03060	330	NMO: Nitronate monooxygenase; InterPro: IPR004136	94.55
PF01207	309	Dus: Dihydrouridine synthase (Dus); InterPro: IPR0	94.54
PRK00278	260	trpC indole-3-glycerol-phosphate synthase; Reviewe	94.53
PF00478	352	IMPDH: IMP dehydrogenase / GMP reductase domain; I	94.52
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	94.43
cd00381	325	IMPDH IMPDH: The catalytic domain of the inosine m	94.42
TIGR00381	389	cdhD CO dehydrogenase/acetyl-CoA synthase, delta s	94.27
PRK07455	187	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	94.23
COG1902	363	NemA NADH:flavin oxidoreductases, Old Yellow Enzym	94.22
PRK09427	454	bifunctional indole-3-glycerol phosphate synthase/	94.2
KOG3111	224	consensus D-ribulose-5-phosphate 3-epimerase [Carb	94.1
PRK09140	206	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R	94.04
PRK13397	250	3-deoxy-7-phosphoheptulonate synthase; Provisional	94.01
cd00452	190	KDPG_aldolase KDPG and KHG aldolase. This family b	94.0
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	93.97
cd03328	352	MR_like_3 Mandelate racemase (MR)-like subfamily o	93.97
COG0269	217	SgbH 3-hexulose-6-phosphate synthase and related p	93.92
PRK08385	278	nicotinate-nucleotide pyrophosphorylase; Provision	93.91
PRK07695	201	transcriptional regulator TenI; Provisional	93.86
PRK05742	277	nicotinate-nucleotide pyrophosphorylase; Provision	93.83
COG0042	323	tRNA-dihydrouridine synthase [Translation, ribosom	93.81
PF00697	197	PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isome	93.78
TIGR00126	211	deoC deoxyribose-phosphate aldolase. Deoxyribose-p	93.76
cd03332	383	LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin	93.76
TIGR01334	277	modD putative molybdenum utilization protein ModD.	93.64
cd03318	365	MLE Muconate Lactonizing Enzyme (MLE), an homoocta	93.64
cd06556	240	ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup	93.57
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	93.57
cd04727	283	pdxS PdxS is a subunit of the pyridoxal 5'-phospha	93.54
COG0826	347	Collagenase and related proteases [Posttranslation	93.54
COG0191	286	Fba Fructose/tagatose bisphosphate aldolase [Carbo	93.53
PF01180	295	DHO_dh: Dihydroorotate dehydrogenase; InterPro: IP	93.5
cd01568	269	QPRTase_NadC Quinolinate phosphoribosyl transferas	93.46
PRK04180	293	pyridoxal biosynthesis lyase PdxS; Provisional	93.45
PF01070	356	FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR	93.43
PRK05437	352	isopentenyl pyrophosphate isomerase; Provisional	93.41
cd03174	265	DRE_TIM_metallolyase DRE-TIM metallolyase superfam	93.39
cd07948	262	DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s	93.38
PRK07428	288	nicotinate-nucleotide pyrophosphorylase; Provision	93.37
PRK09197	350	fructose-bisphosphate aldolase; Provisional	93.36
TIGR01361	260	DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate	93.35
TIGR02320	285	PEP_mutase phosphoenolpyruvate phosphomutase. A cl	93.34
PLN02858	1378	fructose-bisphosphate aldolase	93.31
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	93.27
PRK06806	281	fructose-bisphosphate aldolase; Provisional	93.25
TIGR00693	196	thiE thiamine-phosphate pyrophosphorylase. This mo	93.23
PRK06552	213	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	93.17
cd00405	203	PRAI Phosphoribosylanthranilate isomerase (PRAI) c	93.17
PRK13306	216	ulaD 3-keto-L-gulonate-6-phosphate decarboxylase;	93.15
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	93.14
PRK08385	278	nicotinate-nucleotide pyrophosphorylase; Provision	93.12
cd00958	235	DhnA Class I fructose-1,6-bisphosphate (FBP) aldol	93.02
PRK12858	340	tagatose 1,6-diphosphate aldolase; Reviewed	93.01
PRK05718	212	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	93.0
cd03324	415	rTSbeta_L-fuconate_dehydratase Human rTS beta is e	92.99
TIGR01334	277	modD putative molybdenum utilization protein ModD.	92.98
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	92.94
PRK04452	319	acetyl-CoA decarbonylase/synthase complex subunit	92.92
cd00453	340	FTBP_aldolase_II Fructose/tagarose-bisphosphate al	92.91
KOG0538	363	consensus Glycolate oxidase [Energy production and	92.8
COG0149	251	TpiA Triosephosphate isomerase [Carbohydrate trans	92.79
TIGR01859	282	fruc_bis_ald_ fructose-1,6-bisphosphate aldolase,	92.77
TIGR02534	368	mucon_cyclo muconate and chloromuconate cycloisome	92.75
cd04742	418	NPD_FabD 2-Nitropropane dioxygenase (NPD)-like dom	92.69
PRK06106	281	nicotinate-nucleotide pyrophosphorylase; Provision	92.62
PRK08195	337	4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac	92.57
PRK06559	290	nicotinate-nucleotide pyrophosphorylase; Provision	92.48
PRK08072	277	nicotinate-nucleotide pyrophosphorylase; Provision	92.41
cd01572	268	QPRTase Quinolinate phosphoribosyl transferase (QA	92.39
PF01645	368	Glu_synthase: Conserved region in glutamate syntha	92.37
KOG4175	268	consensus Tryptophan synthase alpha chain [Amino a	92.27
PRK02714	320	O-succinylbenzoate synthase; Provisional	92.22
TIGR01182	204	eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho	92.21
PRK14017	382	galactonate dehydratase; Provisional	92.17
TIGR00078	265	nadC nicotinate-nucleotide pyrophosphorylase. Syno	92.16
cd02808	392	GltS_FMN Glutamate synthase (GltS) FMN-binding dom	92.15
TIGR00959	428	ffh signal recognition particle protein. This mode	92.13
cd03327	341	MR_like_2 Mandelate racemase (MR)-like subfamily o	92.12
PRK11858	378	aksA trans-homoaconitate synthase; Reviewed	92.08
TIGR00064	272	ftsY signal recognition particle-docking protein F	92.07
PF13714	238	PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB	92.04
PLN02979	366	glycolate oxidase	92.04
cd03325	352	D-galactonate_dehydratase D-galactonate dehydratas	92.01
TIGR02660	365	nifV_homocitr homocitrate synthase NifV. This fami	91.97
PF03932	201	CutC: CutC family; InterPro: IPR005627 Copper tran	91.93
cd07944	266	DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-	91.89
PRK06978	294	nicotinate-nucleotide pyrophosphorylase; Provision	91.85
cd03326	385	MR_like_1 Mandelate racemase (MR)-like subfamily o	91.84
COG3010	229	NanE Putative N-acetylmannosamine-6-phosphate epim	91.84
PRK12595	360	bifunctional 3-deoxy-7-phosphoheptulonate synthase	91.84
cd03317	354	NAAAR N-acylamino acid racemase (NAAAR), an octame	91.83
PRK09016	296	quinolinate phosphoribosyltransferase; Validated	91.83
PRK06096	284	molybdenum transport protein ModD; Provisional	91.83
TIGR00343	287	pyridoxal 5'-phosphate synthase, synthase subunit	91.78
COG0135	208	TrpF Phosphoribosylanthranilate isomerase [Amino a	91.7
TIGR01740	213	pyrF orotidine 5'-phosphate decarboxylase, subfami	91.66
TIGR01949	258	AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep	91.65
TIGR00419	205	tim triosephosphate isomerase. Triosephosphate iso	91.62
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	91.58
COG2070	336	Dioxygenases related to 2-nitropropane dioxygenase	91.57
PRK11572	248	copper homeostasis protein CutC; Provisional	91.56
PRK11197	381	lldD L-lactate dehydrogenase; Provisional	91.52
PRK06256	336	biotin synthase; Validated	91.52
PRK02261	137	methylaspartate mutase subunit S; Provisional	91.52
PRK13398	266	3-deoxy-7-phosphoheptulonate synthase; Provisional	91.51
PRK06543	281	nicotinate-nucleotide pyrophosphorylase; Provision	91.48
PLN02429	315	triosephosphate isomerase	91.37
TIGR01520	357	FruBisAldo_II_A fructose-bisphosphate aldolase, cl	91.29
PRK00771	437	signal recognition particle protein Srp54; Provisi	91.29
PF01729	169	QRPTase_C: Quinolinate phosphoribosyl transferase,	91.27
TIGR00640	132	acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal	91.27
PLN02493	367	probable peroxisomal (S)-2-hydroxy-acid oxidase	91.25
PRK06096	284	molybdenum transport protein ModD; Provisional	91.09
TIGR02814	444	pfaD_fam PfaD family protein. The protein PfaD is	91.07

>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase

Probab=100.00  E-value=1.8e-59  Score=428.91  Aligned_cols=258  Identities=79%  Similarity=1.272  Sum_probs=230.8

Q ss_pred             cEEEEEEEeeCCeEEEEEcccccC---CCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHH
Q 021156           54 VRFRPCIDIHKGKVKQIVGSTLQD---SKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALH  130 (316)
Q Consensus        54 ~~iIP~IDi~~G~vvr~~~g~~~~---~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~  130 (316)
                      .|+||||||++|+|||+++|++++   +...+....+.|.|..||+++|+.|.++|++++|+||||+....+..+++.+.
T Consensus         1 ~~~~PAIDl~~Gk~VrL~~G~~~~~~~~~~~~~~~~~~y~~~~dP~~~A~~~~~~Ga~~lHvVDLdgg~~~n~~~i~~i~   80 (262)
T PLN02446          1 VRFRPCIDIHKGKVKQIVGSTLKDSKDGSEDGSELVTNFESDKSAAEFAEMYKRDGLTGGHVIMLGADDASLAAALEALR   80 (262)
T ss_pred             CCeeeeEEeeCCEEEEeeCccccccccccccCCCceEEeCCCCCHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHH
Confidence            378999999999999999987642   11111122678865689999999999999999999999986555555555554


Q ss_pred             hCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCccee
Q 021156          131 AYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKF  210 (316)
Q Consensus       131 ~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~  210 (316)
                      ++++|+|||||||++++++++++||++|||||.+++||+++|+++++++++||+++|++++|+|+++|+|.|+++||++.
T Consensus        81 ~~~~~vqvGGGIR~e~i~~~l~~Ga~rViigT~Av~~~~~~p~~v~~~~~~~G~~~IvvsiD~k~~~g~~~Va~~GW~~~  160 (262)
T PLN02446         81 AYPGGLQVGGGVNSENAMSYLDAGASHVIVTSYVFRDGQIDLERLKDLVRLVGKQRLVLDLSCRKKDGRYYVVTDRWQKF  160 (262)
T ss_pred             hCCCCEEEeCCccHHHHHHHHHcCCCEEEEchHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEecCCCEEEEECCCccc
Confidence            48899999999999999999999999999999999999999999999999999999999999975456689999999999


Q ss_pred             cccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccc
Q 021156          211 SDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSA  290 (316)
Q Consensus       211 ~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~A  290 (316)
                      ++.++.+++.++.+.|++++++|+|++|||++|+|+++++++++.+++|||+|||++|++|+.++.++|.|+.++|+|+|
T Consensus       161 t~~~~~e~~~~~~~~g~~eii~TdI~rDGtl~G~d~el~~~l~~~~~ipVIASGGv~sleDi~~L~~~g~g~~gvIvGkA  240 (262)
T PLN02446        161 SDLAVDEETLEFLAAYCDEFLVHGVDVEGKRLGIDEELVALLGEHSPIPVTYAGGVRSLDDLERVKVAGGGRVDVTVGSA  240 (262)
T ss_pred             CCCCHHHHHHHHHHhCCCEEEEEEEcCCCcccCCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHcCCCCEEEEEEee
Confidence            99999999999999999999999999999999999999999999999999999999999999999998655899999999


Q ss_pred             hhhccCcccHHHHHHHHHhhc
Q 021156          291 LDIFGGNLAYKDVVAWHAQQE  311 (316)
Q Consensus       291 l~~~~g~~~~~~~~~~~~~~~  311 (316)
                      +.+|+|+++++|+++|.++++
T Consensus       241 l~~y~g~~~l~ea~~~~~~~~  261 (262)
T PLN02446        241 LDIFGGNLPYDDVVAWHKQQK  261 (262)
T ss_pred             HHHhCCCccHHHHHHHHhhcC
Confidence            988999999999999999764

>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]

Probab=100.00  E-value=1.3e-56  Score=402.41  Aligned_cols=235  Identities=28%  Similarity=0.418  Sum_probs=217.8

Q ss_pred             ccEEEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCCc---c-cHHHHHHH
Q 021156           53 AVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADP---L-SKAAAIEA  128 (316)
Q Consensus        53 ~~~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~~---~-~~~~i~~~  128 (316)
                      +|.||||||+++|+|||+++|++.        +++.|  .+||.++|+.|.+.|++++|+||||++.   + |.+.+.++
T Consensus         1 ~~~iiPAIDl~~G~~VRL~qGd~~--------~~~~y--~~~P~~~a~~~~~~Ga~~lHlVDLdgA~~g~~~n~~~i~~i   70 (241)
T COG0106           1 MMIIIPAIDLKDGKVVRLVQGDYG--------KETVY--SDDPLEVAKKWSDQGAEWLHLVDLDGAKAGGPRNLEAIKEI   70 (241)
T ss_pred             CceEEEeEEeeCCEEEEeecccCC--------cceEe--cCCHHHHHHHHHHcCCcEEEEeeccccccCCcccHHHHHHH
Confidence            589999999999999999988543        55777  4699999999999999999999999873   3 45667777


Q ss_pred             HHhCCCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCc
Q 021156          129 LHAYPGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRW  207 (316)
Q Consensus       129 v~~~~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw  207 (316)
                      ++.+++|+|+|||||+ ++++.|+++|+++||+||.+++|    |++++++.++|| ++|+++||+|  +|  .+.++||
T Consensus        71 ~~~~~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~av~~----p~~v~~~~~~~g-~rivv~lD~r--~g--~vav~GW  141 (241)
T COG0106          71 LEATDVPVQVGGGIRSLEDVEALLDAGVARVIIGTAAVKN----PDLVKELCEEYG-DRIVVALDAR--DG--KVAVSGW  141 (241)
T ss_pred             HHhCCCCEEeeCCcCCHHHHHHHHHCCCCEEEEecceecC----HHHHHHHHHHcC-CcEEEEEEcc--CC--ccccccc
Confidence            7889999999999995 99999999999999999999998    999999999998 9999999998  67  5899999


Q ss_pred             ceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEE
Q 021156          208 QKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTV  287 (316)
Q Consensus       208 ~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gViv  287 (316)
                      ++.+++++.++++++++.|+.+||+||+++|||++|+|+++++++++.+++|||+|||++|.+|++++.+.. |++|||+
T Consensus       142 ~e~s~~~~~~l~~~~~~~g~~~ii~TdI~~DGtl~G~n~~l~~~l~~~~~ipviaSGGv~s~~Di~~l~~~~-G~~GvIv  220 (241)
T COG0106         142 QEDSGVELEELAKRLEEVGLAHILYTDISRDGTLSGPNVDLVKELAEAVDIPVIASGGVSSLDDIKALKELS-GVEGVIV  220 (241)
T ss_pred             cccccCCHHHHHHHHHhcCCCeEEEEecccccccCCCCHHHHHHHHHHhCcCEEEecCcCCHHHHHHHHhcC-CCcEEEE
Confidence            999999999999999999999999999999999999999999999999999999999999999999999993 3999999


Q ss_pred             ccchhhccCcccHHHHHHHHHh
Q 021156          288 GSALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       288 G~Al~~~~g~~~~~~~~~~~~~  309 (316)
                      |||+  |+|.++++++++.++.
T Consensus       221 G~AL--y~g~~~l~ea~~~~~~  240 (241)
T COG0106         221 GRAL--YEGKFTLEEALACVRN  240 (241)
T ss_pred             ehHH--hcCCCCHHHHHHHHhc
Confidence            9999  9999999999887653

>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type

Probab=100.00  E-value=9e-53  Score=383.46  Aligned_cols=246  Identities=54%  Similarity=0.984  Sum_probs=215.5

Q ss_pred             EEEEEEEeeCCeEEEEEcccccCCCCCCCceee-ecCCccCH-HHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHhC
Q 021156           55 RFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVT-NFESDKSA-AEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAY  132 (316)
Q Consensus        55 ~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~-~~~~~~~p-~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~  132 (316)
                      ++||||||++|+|||+++|++++.  .+....+ .|.  .|| +++|+.|+++|++++|+||| +.. |.+.+.++++.+
T Consensus         2 ~~iPAIDl~~Gk~VrL~qG~~~~~--~~~~~~~~~y~--~~pp~~~A~~~~~~Ga~~lHvVDL-g~~-n~~~i~~i~~~~   75 (253)
T TIGR02129         2 KFRPCIDIHNGKVKQIVGGTLTSK--KGSVLKTNFVS--DKPSSYYAKLYKDDGVKGCHVIML-GPN-NDDAAKEALHAY   75 (253)
T ss_pred             ceEeEEEeeCCEEEEeeCcCcccc--ccCCcceEEec--CCCHHHHHHHHHHcCCCEEEEEEC-CCC-cHHHHHHHHHhC
Confidence            689999999999999999865421  0011115 563  456 99999999999999999999 434 777777778888


Q ss_pred             CCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeec-CCeeEEEeCCcceec
Q 021156          133 PGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKK-DGKYAIVTDRWQKFS  211 (316)
Q Consensus       133 ~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~-~g~~~v~~~gw~~~~  211 (316)
                      ++|+++|||||++++++++++||++|++||.+++++.++|++++++.++||+++|++++|+|.+ +|.|.|+++||++.+
T Consensus        76 ~~~v~vGGGIr~e~v~~~l~aGa~rVvIGS~av~~~~i~~~~~~~i~~~fG~~~IvvsiD~k~~~~g~~~V~~~GW~~~t  155 (253)
T TIGR02129        76 PGGLQVGGGINDTNAQEWLDEGASHVIVTSWLFTKGKFDLKRLKEIVSLVGKDRLIVDLSCRKTQDGRWIVAMNKWQTIT  155 (253)
T ss_pred             CCCEEEeCCcCHHHHHHHHHcCCCEEEECcHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEEcCCCcEEEEECCCcccC
Confidence            9999999999999999999999999999999999877779999999999999999999999732 455799999999999


Q ss_pred             ccCHH-HHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccc
Q 021156          212 DVYLD-ERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSA  290 (316)
Q Consensus       212 ~~~~~-e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~A  290 (316)
                      ++++. ++++++.+. ++++++|+|++|||++|||+++++++++.+++|||+|||++|++|+.++.+...++.++++|+|
T Consensus       156 ~~~~~~e~~~~~~~~-~~~il~TdI~rDGtl~G~dlel~~~l~~~~~ipVIASGGv~s~eDi~~l~~~~~g~~~aIvG~A  234 (253)
T TIGR02129       156 DLELNAETLEELSKY-CDEFLIHAADVEGLCKGIDEELVSKLGEWSPIPITYAGGAKSIDDLDLVDELSKGKVDLTIGSA  234 (253)
T ss_pred             CCChHHHHHHHHHhh-CCEEEEeeecccCccccCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhcCCCCcEEeeeh
Confidence            99999 999999999 9999999999999999999999999999999999999999999999999766222788999999


Q ss_pred             hhhccCcc-cHHHHHHHH
Q 021156          291 LDIFGGNL-AYKDVVAWH  307 (316)
Q Consensus       291 l~~~~g~~-~~~~~~~~~  307 (316)
                      +|||.|++ .|.+.++|-
T Consensus       235 lf~f~~~~~~~~~~~~~~  252 (253)
T TIGR02129       235 LDIFGGNLVKFTDCVAWN  252 (253)
T ss_pred             HHHhCCCCccHHHHHhhh
Confidence            99999984 677877774

This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.

>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=100.00  E-value=2.4e-52  Score=381.51  Aligned_cols=231  Identities=22%  Similarity=0.287  Sum_probs=206.4

Q ss_pred             cEEEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCC---cccHHHHHH-HH
Q 021156           54 VRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGAD---PLSKAAAIE-AL  129 (316)
Q Consensus        54 ~~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~---~~~~~~i~~-~v  129 (316)
                      |+|||||||++|+|||+++|++.+        .+.|  .+||+++|+.|+++|++++|++|||++   ...+..+++ +.
T Consensus         1 M~IIPaIDl~~Gk~Vrl~~G~~~~--------~~~~--~~dP~~~A~~~~~~ga~~lhivDLd~a~~g~~~n~~~i~~i~   70 (241)
T PRK14114          1 MLVVPAIDLFRGKVARMVKGKKEN--------TIFY--EKDPAELVEKLIEEGFTLIHVVDLSKAIENSVENLPVLEKLS   70 (241)
T ss_pred             CEEEEEEEEECCEEEEeeccccCc--------ceEE--CCCHHHHHHHHHHCCCCEEEEEECCCcccCCcchHHHHHHHH
Confidence            689999999999999999997642        2445  369999999999999999999999975   234444444 44


Q ss_pred             HhCCCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcc
Q 021156          130 HAYPGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQ  208 (316)
Q Consensus       130 ~~~~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~  208 (316)
                      +.+ .|+|+|||||+ +++++++++||++||+||++++|    |++++++ ++|| +++++|+|+|  +|  .|.++||.
T Consensus        71 ~~~-~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~~~----p~~l~~~-~~~~-~~ivvslD~k--~g--~v~~~gw~  139 (241)
T PRK14114         71 EFA-EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLED----PSFLKFL-KEID-VEPVFSLDTR--GG--KVAFKGWL  139 (241)
T ss_pred             hhc-CcEEEecCCCCHHHHHHHHHCCCCEEEECchhhCC----HHHHHHH-HHhC-CCEEEEEEcc--CC--EEeeCCCe
Confidence            555 79999999995 99999999999999999999998    9999999 5697 5699999998  67  68899999


Q ss_pred             eecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhC---C-CcCE
Q 021156          209 KFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAG---I-GRVD  284 (316)
Q Consensus       209 ~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G---~-g~~g  284 (316)
                      +.++.++.++++++.+.|++++++|++++|||++|||+++++++++.+++|||++||++|.+|+.++.+..   . +++|
T Consensus       140 ~~~~~~~~e~~~~~~~~g~~~ii~tdI~rdGt~~G~d~el~~~l~~~~~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~g  219 (241)
T PRK14114        140 AEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQEHDFSLTRKIAIEAEVKVFAAGGISSENSLKTAQRVHRETNGLLKG  219 (241)
T ss_pred             ecCCCCHHHHHHHHHhcCCCEEEEEeechhhcCCCcCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhcccccCCcEEE
Confidence            99999999999999999999999999999999999999999999998999999999999999999999971   2 3999


Q ss_pred             EEEccchhhccCcccHHHHHHHH
Q 021156          285 VTVGSALDIFGGNLAYKDVVAWH  307 (316)
Q Consensus       285 VivG~Al~~~~g~~~~~~~~~~~  307 (316)
                      |++|+|+  |+|.++++++++++
T Consensus       220 vivg~Al--~~g~i~~~e~~~~~  240 (241)
T PRK14114        220 VIVGRAF--LEGILTVEVMKRYA  240 (241)
T ss_pred             EEEehHH--HCCCCCHHHHHHhh
Confidence            9999999  99999999998775

>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes

Probab=100.00  E-value=1.7e-51  Score=373.91  Aligned_cols=224  Identities=31%  Similarity=0.472  Sum_probs=197.5

Q ss_pred             EEEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCCc----ccHHHHHHHHH
Q 021156           55 RFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADP----LSKAAAIEALH  130 (316)
Q Consensus        55 ~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~~----~~~~~i~~~v~  130 (316)
                      ||||||||++|+|||+++|+|.        ..+.+  .+||+++|+.|++.|++++|++|||++.    .|.+.+.++++
T Consensus         1 ~iiP~iDl~~G~~Vr~~~G~~~--------~~~~~--~~dP~~~a~~~~~~g~~~l~ivDLdaa~~g~~~n~~~i~~i~~   70 (229)
T PF00977_consen    1 RIIPAIDLKNGRVVRLVKGDRF--------SETVY--SGDPVEVAKAFNEQGADELHIVDLDAAKEGRGSNLELIKEIAK   70 (229)
T ss_dssp             EEEEEEEEETTEEEEESTTCCS--------CEECE--CCCHHHHHHHHHHTT-SEEEEEEHHHHCCTHHHHHHHHHHHHH
T ss_pred             CEEEEEEEECCEEEECCCeecc--------eeeEE--CcCHHHHHHHHHHcCCCEEEEEEccCcccCchhHHHHHHHHHh
Confidence            7999999999999999998753        22445  4799999999999999999999999763    34555566667


Q ss_pred             hCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcce
Q 021156          131 AYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQK  209 (316)
Q Consensus       131 ~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~  209 (316)
                      .+++|+|+||||| .+++++++++||++||+||++++|    |++++++.+.||+++|++|+|+|  +| |.+.+++|++
T Consensus        71 ~~~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~~----~~~l~~~~~~~g~~~ivvslD~~--~g-~~v~~~gw~~  143 (229)
T PF00977_consen   71 ETGIPIQVGGGIRSIEDAERLLDAGADRVVIGTEALED----PELLEELAERYGSQRIVVSLDAR--DG-YKVATNGWQE  143 (229)
T ss_dssp             HSSSEEEEESSE-SHHHHHHHHHTT-SEEEESHHHHHC----CHHHHHHHHHHGGGGEEEEEEEE--ET-EEEEETTTTE
T ss_pred             cCCccEEEeCccCcHHHHHHHHHhCCCEEEeChHHhhc----hhHHHHHHHHcCcccEEEEEEee--ec-eEEEecCccc
Confidence            7899999999999 599999999999999999999998    99999999999999999999998  56 6899999999


Q ss_pred             ecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEcc
Q 021156          210 FSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGS  289 (316)
Q Consensus       210 ~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~  289 (316)
                      .++.++.++++++.+.|++++++|++++||+++|||+++++++++.+++|+|++|||++.+|+.++.+.|  +++|++|+
T Consensus       144 ~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~d~~~~~~l~~~~~~~viasGGv~~~~Dl~~l~~~G--~~gvivg~  221 (229)
T PF00977_consen  144 SSGIDLEEFAKRLEELGAGEIILTDIDRDGTMQGPDLELLKQLAEAVNIPVIASGGVRSLEDLRELKKAG--IDGVIVGS  221 (229)
T ss_dssp             EEEEEHHHHHHHHHHTT-SEEEEEETTTTTTSSS--HHHHHHHHHHHSSEEEEESS--SHHHHHHHHHTT--ECEEEESH
T ss_pred             cCCcCHHHHHHHHHhcCCcEEEEeeccccCCcCCCCHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHCC--CcEEEEeh
Confidence            9899999999999999999999999999999999999999999988899999999999999999999998  99999999


Q ss_pred             chhhccCccc
Q 021156          290 ALDIFGGNLA  299 (316)
Q Consensus       290 Al~~~~g~~~  299 (316)
                      |+  |+|.++
T Consensus       222 al--~~g~it  229 (229)
T PF00977_consen  222 AL--HEGKIT  229 (229)
T ss_dssp             HH--HTTSS-
T ss_pred             Hh--hCCccC
Confidence            99  999875

Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....

>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=100.00  E-value=4.1e-50  Score=365.02  Aligned_cols=223  Identities=22%  Similarity=0.306  Sum_probs=197.8

Q ss_pred             ccEEEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCCc---ccHHHHHHHH
Q 021156           53 AVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADP---LSKAAAIEAL  129 (316)
Q Consensus        53 ~~~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~~---~~~~~i~~~v  129 (316)
                      +|+||||||+++|+|||+++|+|++        .+.+   +||+++|+.|+++|++++|++|||++.   .|.+.+.+++
T Consensus         1 mm~iIP~iDl~~G~~Vr~~~G~~~~--------~~~~---~dP~~~a~~~~~~ga~~lhivDLd~a~~~~~n~~~i~~i~   69 (232)
T PRK13586          1 MSKIIPSIDISLGKAVKRIRGVKGT--------GLIL---GNPIEIASKLYNEGYTRIHVVDLDAAEGVGNNEMYIKEIS   69 (232)
T ss_pred             CcEEEEEEEEECCEEEEeeecCCCC--------ceEc---CCHHHHHHHHHHCCCCEEEEEECCCcCCCcchHHHHHHHH
Confidence            4799999999999999999987641        1333   489999999999999999999999862   3444444444


Q ss_pred             HhCCCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcc
Q 021156          130 HAYPGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQ  208 (316)
Q Consensus       130 ~~~~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~  208 (316)
                      +....|+|+|||||+ ++++++++.||++||+||+++++    |+++++++++||+++|++|+|+|+ ++  .|+++||.
T Consensus        70 ~~~~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~~~----p~~~~~~~~~~g~~~ivvslD~~~-~~--~v~~~gw~  142 (232)
T PRK13586         70 KIGFDWIQVGGGIRDIEKAKRLLSLDVNALVFSTIVFTN----FNLFHDIVREIGSNRVLVSIDYDN-TK--RVLIRGWK  142 (232)
T ss_pred             hhCCCCEEEeCCcCCHHHHHHHHHCCCCEEEECchhhCC----HHHHHHHHHHhCCCCEEEEEEcCC-CC--EEEccCCe
Confidence            435569999999995 99999999999999999999998    999999999999999999999942 55  79999997


Q ss_pred             eecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEc
Q 021156          209 KFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVG  288 (316)
Q Consensus       209 ~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG  288 (316)
                      + +..++.++++++.+.|++++++|++++|||++|+|+++++.+++. ..|+|++||+++.+|+.++.+.|  ++||+||
T Consensus       143 ~-~~~~~~e~~~~l~~~g~~~ii~tdI~~dGt~~G~d~el~~~~~~~-~~~viasGGv~s~~Dl~~l~~~G--~~gvivg  218 (232)
T PRK13586        143 E-KSMEVIDGIKKVNELELLGIIFTYISNEGTTKGIDYNVKDYARLI-RGLKEYAGGVSSDADLEYLKNVG--FDYIIVG  218 (232)
T ss_pred             e-CCCCHHHHHHHHHhcCCCEEEEecccccccCcCcCHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHCC--CCEEEEe
Confidence            7 778999999999999999999999999999999999999999876 55799999999999999999988  9999999


Q ss_pred             cchhhccCccc
Q 021156          289 SALDIFGGNLA  299 (316)
Q Consensus       289 ~Al~~~~g~~~  299 (316)
                      +|+  |+|.+.
T Consensus       219 ~Al--y~g~~~  227 (232)
T PRK13586        219 MAF--YLGKLR  227 (232)
T ss_pred             hhh--hcCccc
Confidence            999  999864

>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase

Probab=100.00  E-value=6.7e-50  Score=366.12  Aligned_cols=234  Identities=16%  Similarity=0.166  Sum_probs=206.7

Q ss_pred             ccEEEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCCc---ccHHHHHHHH
Q 021156           53 AVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADP---LSKAAAIEAL  129 (316)
Q Consensus        53 ~~~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~~---~~~~~i~~~v  129 (316)
                      .|+||||||+++|+|||+++|++.        ..+.|   ++|++.|+.|++.|++++|++|||++.   .|...+.+++
T Consensus         2 ~m~iiPaIDl~~G~vVrl~~G~~~--------~~~~y---~~p~~~a~~~~~~g~~~lhivDLd~a~g~~~n~~~i~~i~   70 (243)
T TIGR01919         2 TLILLPAVDVNGGAAVRLQQGAGG--------SKTYY---GSLESAAKWWEQGGAEWIHLVDLDAAFGGGNNEMMLEEVV   70 (243)
T ss_pred             ceEEEEEEEEECCEEEEeecCCCC--------Cceec---CCHHHHHHHHHhCCCeEEEEEECCCCCCCcchHHHHHHHH
Confidence            579999999999999999988643        23566   389999999999999999999999862   3455455555


Q ss_pred             HhCCCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCC-eeEEEeCCc
Q 021156          130 HAYPGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDG-KYAIVTDRW  207 (316)
Q Consensus       130 ~~~~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g-~~~v~~~gw  207 (316)
                      +.+++|+|+|||||+ +++++++++||++||+||+++++    |++++++.+.|| +++++|+|+|. +| ...+.++||
T Consensus        71 ~~~~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~~~----p~~~~~~~~~~g-~~ivvslD~k~-~g~~~~v~~~Gw  144 (243)
T TIGR01919        71 KLLVVVEELSGGRRDDSSLRAALTGGRARVNGGTAALEN----PWWAAAVIRYGG-DIVAVGLDVLE-DGEWHTLGNRGW  144 (243)
T ss_pred             HHCCCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhhCC----HHHHHHHHHHcc-ccEEEEEEEec-CCceEEEECCCe
Confidence            678899999999995 99999999999999999999998    999999999996 67999999973 33 246788999


Q ss_pred             ceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhC-CCcCEEE
Q 021156          208 QKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAG-IGRVDVT  286 (316)
Q Consensus       208 ~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G-~g~~gVi  286 (316)
                      .+ +..++.++++++.+.|++++++|++++|||++|||+++++++++.+++|||++||++|.+|+.++.+.. .|++||+
T Consensus       145 ~~-~~~~~~~~~~~~~~~g~~~ii~tdI~~dGt~~G~d~~l~~~l~~~~~~pviasGGv~s~eDl~~l~~l~~~Gv~gvi  223 (243)
T TIGR01919       145 SD-GGGDLEVLERLLDSGGCSRVVVTDSKKDGLSGGPNELLLEVVAARTDAIVAASGGSSLLDDLRAIKYLDEGGVSVAI  223 (243)
T ss_pred             ec-CCCcHHHHHHHHHhCCCCEEEEEecCCcccCCCcCHHHHHHHHhhCCCCEEEECCcCCHHHHHHHHhhccCCeeEEE
Confidence            87 788999999999999999999999999999999999999999999999999999999999999987541 1499999


Q ss_pred             EccchhhccCcccHHHHHHH
Q 021156          287 VGSALDIFGGNLAYKDVVAW  306 (316)
Q Consensus       287 vG~Al~~~~g~~~~~~~~~~  306 (316)
                      +|+|+  |+|+++++|+++.
T Consensus       224 vg~Al--~~g~i~~~~~~~~  241 (243)
T TIGR01919       224 GGKLL--YARFFTLEAALAV  241 (243)
T ss_pred             EhHHH--HcCCCCHHHHHhh
Confidence            99999  9999999998653

This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.

>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]

Probab=100.00  E-value=1.3e-49  Score=351.49  Aligned_cols=241  Identities=23%  Similarity=0.354  Sum_probs=215.8

Q ss_pred             ccccEEEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHH
Q 021156           51 RCAVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALH  130 (316)
Q Consensus        51 ~~~~~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~  130 (316)
                      ++.+|||||+|+++|+||+  +.+|++.++.           +||+++|+.|++.|++++.+.|++|.......+++.++
T Consensus         1 mL~kRIIPCLDVk~GrVVK--Gv~F~~lrd~-----------GDpVelA~~Y~e~GADElvFlDItAs~~gr~~~~~vv~   67 (256)
T COG0107           1 MLAKRIIPCLDVKDGRVVK--GVNFKNLRDA-----------GDPVELAKRYNEEGADELVFLDITASSEGRETMLDVVE   67 (256)
T ss_pred             CCcceeEeeEEccCCEEEe--cccccchhhc-----------CChHHHHHHHHHcCCCeEEEEecccccccchhHHHHHH
Confidence            3578999999999999999  6667655543           69999999999999999999999998655555555553


Q ss_pred             ----hCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeec-CC---eeE
Q 021156          131 ----AYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKK-DG---KYA  201 (316)
Q Consensus       131 ----~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~-~g---~~~  201 (316)
                          .+.+|++|||||| .+|++++|.+|||+|-|+|.+.+|    |+++.+++++||+|+|++++|.|.+ +|   .|.
T Consensus        68 r~A~~vfiPltVGGGI~s~eD~~~ll~aGADKVSINsaAv~~----p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~  143 (256)
T COG0107          68 RVAEQVFIPLTVGGGIRSVEDARKLLRAGADKVSINSAAVKD----PELITEAADRFGSQCIVVAIDAKRVPDGENGWYE  143 (256)
T ss_pred             HHHhhceeeeEecCCcCCHHHHHHHHHcCCCeeeeChhHhcC----hHHHHHHHHHhCCceEEEEEEeeeccCCCCCcEE
Confidence                5789999999999 599999999999999999999998    9999999999999999999999875 33   589


Q ss_pred             EEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCC
Q 021156          202 IVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIG  281 (316)
Q Consensus       202 v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g  281 (316)
                      |+++|+++.+++++++|+++++++|++||++|++|+||+..|+|+++++.+++.+++|||+|||.++++|+.+++..| .
T Consensus       144 v~~~gGr~~t~~d~~~Wa~~~e~~GAGEIlLtsmD~DGtk~GyDl~l~~~v~~~v~iPvIASGGaG~~ehf~eaf~~~-~  222 (256)
T COG0107         144 VFTHGGREDTGLDAVEWAKEVEELGAGEILLTSMDRDGTKAGYDLELTRAVREAVNIPVIASGGAGKPEHFVEAFTEG-K  222 (256)
T ss_pred             EEecCCCcCCCcCHHHHHHHHHHcCCceEEEeeecccccccCcCHHHHHHHHHhCCCCEEecCCCCcHHHHHHHHHhc-C
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999998 3


Q ss_pred             cCEEEEccchhhccCcccHHHHHHHHHhhc
Q 021156          282 RVDVTVGSALDIFGGNLAYKDVVAWHAQQE  311 (316)
Q Consensus       282 ~~gVivG~Al~~~~g~~~~~~~~~~~~~~~  311 (316)
                      ++++..++-+ || +.+++.+++++++++.
T Consensus       223 adAaLAAsiF-H~-~~~~i~evK~yL~~~g  250 (256)
T COG0107         223 ADAALAASIF-HF-GEITIGEVKEYLAEQG  250 (256)
T ss_pred             ccHHHhhhhh-hc-CcccHHHHHHHHHHcC
Confidence            6655555554 55 8899999999998865

>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=100.00  E-value=1.7e-49  Score=361.80  Aligned_cols=221  Identities=19%  Similarity=0.275  Sum_probs=202.3

Q ss_pred             cEEEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHH-cCCCcceEEEecCCc----ccHHHHHHH
Q 021156           54 VRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKE-DGLTGGHAIMLGADP----LSKAAAIEA  128 (316)
Q Consensus        54 ~~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~-~G~~~l~lvDLda~~----~~~~~i~~~  128 (316)
                      ++|||+||+++|+|||+++|+|+        ..++|.  +||+++|+.|++ .|++++|++|||++.    .|.+.+.++
T Consensus         2 ~~iiPaIDl~~G~~Vr~~~G~~~--------~~~~~~--~dp~~~a~~~~~~~Ga~~l~ivDLd~a~~~~~~n~~~I~~i   71 (234)
T PRK13587          2 IELWPAIDLIGSTSVRLTEGKYD--------SEEKMS--RSAEESIAYYSQFECVNRIHIVDLIGAKAQHAREFDYIKSL   71 (234)
T ss_pred             CEEEEEEEccCCEEEEcCcccCC--------CceEeC--CCHHHHHHHHHhccCCCEEEEEECcccccCCcchHHHHHHH
Confidence            67999999999999999999875        236673  699999999999 689999999999873    345555566


Q ss_pred             HHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCc
Q 021156          129 LHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRW  207 (316)
Q Consensus       129 v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw  207 (316)
                      ++.+++|+|+||||| .|++++++++||++||+||++++|    |+++++++++|| ++|++|+|++  +|  .+.++||
T Consensus        72 ~~~~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~~~----~~~l~~~~~~fg-~~ivvslD~~--~g--~v~~~gw  142 (234)
T PRK13587         72 RRLTTKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGIQD----TDWLKEMAHTFP-GRIYLSVDAY--GE--DIKVNGW  142 (234)
T ss_pred             HhhcCCeEEEcCCcCCHHHHHHHHHCCCCEEEECchHhcC----HHHHHHHHHHcC-CCEEEEEEee--CC--EEEecCC
Confidence            677889999999999 599999999999999999999998    999999999997 7799999998  66  6889999


Q ss_pred             ceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEE
Q 021156          208 QKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTV  287 (316)
Q Consensus       208 ~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gViv  287 (316)
                      ++.++.++.++++++.+.|++++++|++++|||++|+|+++++++.+.+++|||++||+++++|+.++++.|  +++|++
T Consensus       143 ~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~~~~li~~l~~~~~ipvi~~GGi~s~edi~~l~~~G--~~~viv  220 (234)
T PRK13587        143 EEDTELNLFSFVRQLSDIPLGGIIYTDIAKDGKMSGPNFELTGQLVKATTIPVIASGGIRHQQDIQRLASLN--VHAAII  220 (234)
T ss_pred             cccCCCCHHHHHHHHHHcCCCEEEEecccCcCCCCccCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcC--CCEEEE
Confidence            999999999999999999999999999999999999999999999988899999999999999999999988  999999


Q ss_pred             ccchhhccCc
Q 021156          288 GSALDIFGGN  297 (316)
Q Consensus       288 G~Al~~~~g~  297 (316)
                      |+|+  |++.
T Consensus       221 G~a~--~~~~  228 (234)
T PRK13587        221 GKAA--HQAS  228 (234)
T ss_pred             hHHH--HhCh
Confidence            9999  9854

>PRK14024 phosphoribosyl isomerase A; Provisional

Probab=100.00  E-value=3.1e-49  Score=361.70  Aligned_cols=233  Identities=20%  Similarity=0.316  Sum_probs=208.0

Q ss_pred             cccEEEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCCc---ccHHHHHHH
Q 021156           52 CAVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADP---LSKAAAIEA  128 (316)
Q Consensus        52 ~~~~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~~---~~~~~i~~~  128 (316)
                      ++|+|||+||+++|+|||+++|+|.  +      .+.|   +||+++|+.|+++|++++|++|||++.   .|...+.++
T Consensus         2 ~~m~iIP~idl~~G~~V~~~~g~~~--~------~~~~---~dp~~~a~~~~~~g~~~l~ivDLd~~~g~~~n~~~i~~i   70 (241)
T PRK14024          2 MSLTLLPAVDVVDGQAVRLVQGEAG--S------ETSY---GSPLDAALAWQRDGAEWIHLVDLDAAFGRGSNRELLAEV   70 (241)
T ss_pred             CceEEEEEEEeECCEEEEeeccccc--C------ceEC---CCHHHHHHHHHHCCCCEEEEEeccccCCCCccHHHHHHH
Confidence            4589999999999999999998754  2      2445   499999999999999999999999873   456566666


Q ss_pred             HHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCc
Q 021156          129 LHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRW  207 (316)
Q Consensus       129 v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw  207 (316)
                      ++.+++|+|+||||| .|++++++++||+++++||++++|    |+++.+++++|+ +++++|+|++  ++  .+++.||
T Consensus        71 ~~~~~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l~~----p~l~~~i~~~~~-~~i~vsld~~--~~--~v~~~Gw  141 (241)
T PRK14024         71 VGKLDVKVELSGGIRDDESLEAALATGCARVNIGTAALEN----PEWCARVIAEHG-DRVAVGLDVR--GH--TLAARGW  141 (241)
T ss_pred             HHHcCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchHhCC----HHHHHHHHHHhh-hhEEEEEEEe--cc--EeccCCe
Confidence            677899999999999 599999999999999999999998    999999999996 6799999997  55  5777999


Q ss_pred             ceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhC-CCcCEEE
Q 021156          208 QKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAG-IGRVDVT  286 (316)
Q Consensus       208 ~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G-~g~~gVi  286 (316)
                      .+ +..++.++++++.+.|++++++|+++++|+++|+||++++++++.+++|||++||++|.+|+.++.+.. .|++|||
T Consensus       142 ~~-~~~~~~~~~~~l~~~G~~~iiv~~~~~~g~~~G~d~~~i~~i~~~~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~  220 (241)
T PRK14024        142 TR-DGGDLWEVLERLDSAGCSRYVVTDVTKDGTLTGPNLELLREVCARTDAPVVASGGVSSLDDLRALAELVPLGVEGAI  220 (241)
T ss_pred             ee-cCccHHHHHHHHHhcCCCEEEEEeecCCCCccCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHhhhccCCccEEE
Confidence            86 557899999999999999999999999999999999999999999999999999999999999997541 1399999


Q ss_pred             EccchhhccCcccHHHHHHHH
Q 021156          287 VGSALDIFGGNLAYKDVVAWH  307 (316)
Q Consensus       287 vG~Al~~~~g~~~~~~~~~~~  307 (316)
                      +|+|+  |+|+++++++++..
T Consensus       221 igra~--~~g~~~~~~~~~~~  239 (241)
T PRK14024        221 VGKAL--YAGAFTLPEALAVV  239 (241)
T ss_pred             EeHHH--HcCCCCHHHHHHHh
Confidence            99999  99999999998764

>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=100.00  E-value=5e-46  Score=338.87  Aligned_cols=228  Identities=33%  Similarity=0.433  Sum_probs=201.2

Q ss_pred             EEEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCC---cccHHHHHHHHHh
Q 021156           55 RFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGAD---PLSKAAAIEALHA  131 (316)
Q Consensus        55 ~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~---~~~~~~i~~~v~~  131 (316)
                      |||||||+++|+|||+++|+|+  +|.|.  .+.+...+||+++|+.|.++|++++|++|||++   +.|...+.++.+.
T Consensus         1 riiP~iDl~~G~~V~~~~G~~~--~~~p~--~~~~~~~~dp~~~a~~~~~~g~~~l~i~DLd~~~~~~~n~~~i~~i~~~   76 (233)
T cd04723           1 RIIPVIDLKDGVVVHGVGGDRD--NYRPI--TSNLCSTSDPLDVARAYKELGFRGLYIADLDAIMGRGDNDEAIRELAAA   76 (233)
T ss_pred             CeEEEEECcCCEEEEeeccChh--hcccc--ccCcccCCCHHHHHHHHHHCCCCEEEEEeCccccCCCccHHHHHHHHHh
Confidence            6899999999999999999875  34432  123332469999999999999999999999986   3455566666677


Q ss_pred             CCCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCccee
Q 021156          132 YPGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKF  210 (316)
Q Consensus       132 ~~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~  210 (316)
                      +++|+|+|||||+ |++++++++||++||+||++++    + +++++++++||++++++|+|++  +++  +.   | +.
T Consensus        77 ~~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~~~----~-~~~~~~~~~~~~~~iivslD~~--~~~--~~---~-~~  143 (233)
T cd04723          77 WPLGLWVDGGIRSLENAQEWLKRGASRVIVGTETLP----S-DDDEDRLAALGEQRLVLSLDFR--GGQ--LL---K-PT  143 (233)
T ss_pred             CCCCEEEecCcCCHHHHHHHHHcCCCeEEEcceecc----c-hHHHHHHHhcCCCCeEEEEecc--CCe--ec---c-cc
Confidence            8899999999995 9999999999999999999998    6 8999999999877999999998  663  33   4 34


Q ss_pred             cccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccc
Q 021156          211 SDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSA  290 (316)
Q Consensus       211 ~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~A  290 (316)
                      +..++.++++++.+. +++++++|++++|+++|+|+++++++.+.+++||+++||++|.+|+.++++.|  +++|++|+|
T Consensus       144 ~~~~~~~~~~~~~~~-~~~li~~di~~~G~~~g~~~~~~~~i~~~~~ipvi~~GGi~s~edi~~l~~~G--~~~vivGsa  220 (233)
T cd04723         144 DFIGPEELLRRLAKW-PEELIVLDIDRVGSGQGPDLELLERLAARADIPVIAAGGVRSVEDLELLKKLG--ASGALVASA  220 (233)
T ss_pred             CcCCHHHHHHHHHHh-CCeEEEEEcCccccCCCcCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcC--CCEEEEehH
Confidence            567899999999999 99999999999999999999999999999999999999999999999999998  999999999


Q ss_pred             hhhccCcccHHHHH
Q 021156          291 LDIFGGNLAYKDVV  304 (316)
Q Consensus       291 l~~~~g~~~~~~~~  304 (316)
                      +  |+|.+++++++
T Consensus       221 l--~~g~~~~~~~~  232 (233)
T cd04723         221 L--HDGGLTLEDVV  232 (233)
T ss_pred             H--HcCCCCHHHHh
Confidence            9  99999998875

The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl

>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=100.00  E-value=9.2e-45  Score=329.34  Aligned_cols=221  Identities=21%  Similarity=0.378  Sum_probs=195.4

Q ss_pred             ccEEEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCCc----ccHHHHHHH
Q 021156           53 AVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADP----LSKAAAIEA  128 (316)
Q Consensus        53 ~~~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~~----~~~~~i~~~  128 (316)
                      +|+|||+||+++|+|||+++|++++  |      +.+   .+|+++|+.|.+. ++++|++|||++.    .|.+.+.++
T Consensus         1 mmrIip~iD~~~G~vVr~~~G~~~~--~------~~~---~dp~~~a~~~~~~-~~~l~ivDldga~~g~~~n~~~i~~i   68 (228)
T PRK04128          1 MMRIYPAIDLMNGKAVRLYKGRKEE--V------KVY---GDPVEIALRFSEY-VDKIHVVDLDGAFEGKPKNLDVVKNI   68 (228)
T ss_pred             CcEEEEEEEeECCEEEEEEeccccC--c------eEC---CCHHHHHHHHHHh-CCEEEEEECcchhcCCcchHHHHHHH
Confidence            4899999999999999999997652  1      233   4899999999998 9999999999752    355555566


Q ss_pred             HHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCc
Q 021156          129 LHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRW  207 (316)
Q Consensus       129 v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw  207 (316)
                      .+.+++|+++||||| .+|+++++++||++||+||+++ |    |+++++++++|| + +++|+|+|  +|  .+.++||
T Consensus        69 ~~~~~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~-~----~~~l~~~~~~~g-~-ivvslD~~--~g--~v~~~gw  137 (228)
T PRK04128         69 IRETGLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAF-D----LEFLEKVTSEFE-G-ITVSLDVK--GG--RIAVKGW  137 (228)
T ss_pred             HhhCCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhc-C----HHHHHHHHHHcC-C-EEEEEEcc--CC--eEecCCC
Confidence            667889999999999 5999999999999999999999 7    999999999996 3 99999998  77  6889999


Q ss_pred             ceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEE
Q 021156          208 QKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTV  287 (316)
Q Consensus       208 ~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gViv  287 (316)
                      ++.++.+++++++++.+. ++++++|++++|||++|+| ++.+.+   .++|||++||+++.+|+.++.+.|  ++||++
T Consensus       138 ~~~~~~~~~~~~~~~~~~-~~~ii~t~i~~dGt~~G~d-~l~~~~---~~~pviasGGv~~~~Dl~~l~~~g--~~gviv  210 (228)
T PRK04128        138 LEESSIKVEDAYEMLKNY-VNRFIYTSIERDGTLTGIE-EIERFW---GDEEFIYAGGVSSAEDVKKLAEIG--FSGVII  210 (228)
T ss_pred             eEcCCCCHHHHHHHHHHH-hCEEEEEeccchhcccCHH-HHHHhc---CCCCEEEECCCCCHHHHHHHHHCC--CCEEEE
Confidence            998899999999999998 9999999999999999999 444332   579999999999999999999987  999999


Q ss_pred             ccchhhccCcccHHHHHH
Q 021156          288 GSALDIFGGNLAYKDVVA  305 (316)
Q Consensus       288 G~Al~~~~g~~~~~~~~~  305 (316)
                      |+|+  |+|.++++++++
T Consensus       211 g~al--~~g~~~~~~~~~  226 (228)
T PRK04128        211 GKAL--YEGRISLEELLE  226 (228)
T ss_pred             Ehhh--hcCCcCHHHHHh
Confidence            9999  999999998754

>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=100.00  E-value=8.5e-44  Score=327.75  Aligned_cols=239  Identities=22%  Similarity=0.292  Sum_probs=213.0

Q ss_pred             cccEEEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCCc----ccHHHHHH
Q 021156           52 CAVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADP----LSKAAAIE  127 (316)
Q Consensus        52 ~~~~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~~----~~~~~i~~  127 (316)
                      +..+|||+||+++|+|||+++.+          + ..+  ..||.++|+.|+++|++++|++|++++.    .+...+.+
T Consensus         2 ~~~~iip~idl~~g~~V~~~~~~----------~-~~~--~~d~~~~a~~~~~~G~~~i~i~dl~~~~~~~~~~~~~i~~   68 (253)
T PRK02083          2 LAKRIIPCLDVKDGRVVKGVNFV----------N-LRD--AGDPVELAKRYNEEGADELVFLDITASSEGRDTMLDVVER   68 (253)
T ss_pred             CCCeEEEEEEEECCEEEEeEEec----------c-eee--cCCHHHHHHHHHHcCCCEEEEEeCCcccccCcchHHHHHH
Confidence            57899999999999999987521          1 123  3699999999999999999999999752    34445555


Q ss_pred             HHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeec--CCeeEEEe
Q 021156          128 ALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKK--DGKYAIVT  204 (316)
Q Consensus       128 ~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~--~g~~~v~~  204 (316)
                      +.+.+++|+++||||+ .++++++++.||+.|++||..+++    |++++++.+.||++++++++|++..  .+.+.|++
T Consensus        69 i~~~~~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~l~~----p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~  144 (253)
T PRK02083         69 VAEQVFIPLTVGGGIRSVEDARRLLRAGADKVSINSAAVAN----PELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYT  144 (253)
T ss_pred             HHHhCCCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhHhhC----cHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEE
Confidence            5567889999999999 599999999999999999999998    9999999999999999999999720  14578999


Q ss_pred             CCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHh-CCCcC
Q 021156          205 DRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVA-GIGRV  283 (316)
Q Consensus       205 ~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~-G~g~~  283 (316)
                      ++|.+.+..++.++++++.+.|++++++|+++++|+++|+|+++++++++.+++|||++||+++.+|+.++++. |  ++
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G--~~  222 (253)
T PRK02083        145 HGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGTKNGYDLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGG--AD  222 (253)
T ss_pred             cCCceecCCCHHHHHHHHHHcCCCEEEEcCCcCCCCCCCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCC--cc
Confidence            99999888899999999999999999999999999999999999999999899999999999999999999986 6  99


Q ss_pred             EEEEccchhhccCcccHHHHHHHHHhhc
Q 021156          284 DVTVGSALDIFGGNLAYKDVVAWHAQQE  311 (316)
Q Consensus       284 gVivG~Al~~~~g~~~~~~~~~~~~~~~  311 (316)
                      +|++|+|+  |+|.+++++++++++++.
T Consensus       223 gvivg~al--~~~~~~~~~~~~~~~~~~  248 (253)
T PRK02083        223 AALAASIF--HFGEITIGELKAYLAEQG  248 (253)
T ss_pred             EEeEhHHH--HcCCCCHHHHHHHHHHCC
Confidence            99999999  999999999999998754

>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit

Probab=100.00  E-value=1.1e-43  Score=327.23  Aligned_cols=238  Identities=21%  Similarity=0.241  Sum_probs=213.1

Q ss_pred             cccEEEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCCc----ccHHHHHH
Q 021156           52 CAVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADP----LSKAAAIE  127 (316)
Q Consensus        52 ~~~~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~~----~~~~~i~~  127 (316)
                      +..+|||+||+++|+|||+++.+          . +.+  ..||+++|+.|++.|++++|++||+++.    .+.+.+.+
T Consensus         2 ~~~~iip~iD~~~G~~V~~~~~~----------~-~~~--~~dp~~~a~~~~~~G~~~l~v~Dl~~~~~~~~~n~~~i~~   68 (254)
T TIGR00735         2 LAKRIIPCLDVRDGRVVKGVQFL----------N-LRD--AGDPVELAQRYDEEGADELVFLDITASSEGRTTMIDVVER   68 (254)
T ss_pred             CCCeEEEEEEeECCEEEEeEeec----------C-ceE--CCCHHHHHHHHHHcCCCEEEEEcCCcccccChhhHHHHHH
Confidence            57899999999999999977421          1 223  3599999999999999999999999762    34444455


Q ss_pred             HHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCC------ee
Q 021156          128 ALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDG------KY  200 (316)
Q Consensus       128 ~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g------~~  200 (316)
                      +.+.+++|+++||||| .+|+++++++||++|++||+++++    |++++++.+.||+++|++++|++  +|      .|
T Consensus        69 i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~~~----p~~~~~~~~~~~~~~iv~slD~~--~g~~~~~~~~  142 (254)
T TIGR00735        69 TAETVFIPLTVGGGIKSIEDVDKLLRAGADKVSINTAAVKN----PELIYELADRFGSQCIVVAIDAK--RVYVNSYCWY  142 (254)
T ss_pred             HHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhhC----hHHHHHHHHHcCCCCEEEEEEec--cCCCCCCccE
Confidence            5567889999999999 599999999999999999999998    99999999999889999999997  44      35


Q ss_pred             EEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCC
Q 021156          201 AIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGI  280 (316)
Q Consensus       201 ~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~  280 (316)
                      .|++++|.+.+..++.++++.+.+.|++++++|+++++|+..|+|+++++++++.+++|||++||+++++|+.++++.| 
T Consensus       143 ~v~i~gw~~~~~~~~~~~~~~l~~~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g-  221 (254)
T TIGR00735       143 EVYIYGGRESTGLDAVEWAKEVEKLGAGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKG-  221 (254)
T ss_pred             EEEEeCCcccCCCCHHHHHHHHHHcCCCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcC-
Confidence            8999999998888999999999999999999999999999999999999999999999999999999999999999987 


Q ss_pred             CcCEEEEccchhhccCcccHHHHHHHHHhhc
Q 021156          281 GRVDVTVGSALDIFGGNLAYKDVVAWHAQQE  311 (316)
Q Consensus       281 g~~gVivG~Al~~~~g~~~~~~~~~~~~~~~  311 (316)
                      ++++|++|+++  |++.++++++++++++..
T Consensus       222 ~~dgv~~g~a~--~~~~~~~~~~~~~~~~~g  250 (254)
T TIGR00735       222 KADAALAASVF--HYREITIGEVKEYLAERG  250 (254)
T ss_pred             CcceeeEhHHH--hCCCCCHHHHHHHHHHCC
Confidence            69999999999  999999999999998643

>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=100.00  E-value=2.6e-43  Score=325.54  Aligned_cols=239  Identities=18%  Similarity=0.211  Sum_probs=209.9

Q ss_pred             cccEEEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCCc----ccHHHHHH
Q 021156           52 CAVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADP----LSKAAAIE  127 (316)
Q Consensus        52 ~~~~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~~----~~~~~i~~  127 (316)
                      ++++|||+||+++|++|++.+++.          .+ |  ..||+++|+.|.++|++++|++|||++.    .|.+.+.+
T Consensus         2 ~~~~iipaiD~~~G~~V~~~~~~~----------~~-~--~~dp~~~a~~~~~~g~~~l~i~Dl~~~~~~~~~n~~~i~~   68 (258)
T PRK01033          2 LRPRIIPCLLLKDGGLVKTVKFKD----------PR-Y--IGDPINAVRIFNEKEVDELIVLDIDASKRGSEPNYELIEN   68 (258)
T ss_pred             CCcEEEEEEEEECCcEEEeecccC----------ce-e--CCCHHHHHHHHHHcCCCEEEEEECCCCcCCCcccHHHHHH
Confidence            578999999999999999886431          13 4  2599999999999999999999999762    35555556


Q ss_pred             HHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeec-CCeeEEEeC
Q 021156          128 ALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKK-DGKYAIVTD  205 (316)
Q Consensus       128 ~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~-~g~~~v~~~  205 (316)
                      +++.+++|+++||||+ .+++++++++|+++|++||+.+++    |+++++++++||++++++|+|+|.. .|.|.+.++
T Consensus        69 i~~~~~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~~~~~----~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v~~~  144 (258)
T PRK01033         69 LASECFMPLCYGGGIKTLEQAKKIFSLGVEKVSINTAALED----PDLITEAAERFGSQSVVVSIDVKKNLGGKFDVYTH  144 (258)
T ss_pred             HHHhCCCCEEECCCCCCHHHHHHHHHCCCCEEEEChHHhcC----HHHHHHHHHHhCCCcEEEEEEEecCCCCcEEEEEc
Confidence            5667889999999999 599999999999999999999998    9999999999988999999999832 134789999


Q ss_pred             CcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHH-HhCCCcCE
Q 021156          206 RWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIK-VAGIGRVD  284 (316)
Q Consensus       206 gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~-~~G~g~~g  284 (316)
                      ||++.++.++.++++++++.|++++++|+++++|+++|+|+++++++++.+++|||++||+++.+|+.+++ +.|  ++|
T Consensus       145 gw~~~~~~~~~e~~~~~~~~g~~~ii~~~i~~~G~~~G~d~~~i~~~~~~~~ipvIasGGv~s~eD~~~l~~~~G--vdg  222 (258)
T PRK01033        145 NGTKKLKKDPLELAKEYEALGAGEILLNSIDRDGTMKGYDLELLKSFRNALKIPLIALGGAGSLDDIVEAILNLG--ADA  222 (258)
T ss_pred             CCeecCCCCHHHHHHHHHHcCCCEEEEEccCCCCCcCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHHCC--CCE
Confidence            99998888999999999999999999999999999999999999999999999999999999999999999 566  999


Q ss_pred             EEEccchhhccC--------cccHHHHHHHHHhhc
Q 021156          285 VTVGSALDIFGG--------NLAYKDVVAWHAQQE  311 (316)
Q Consensus       285 VivG~Al~~~~g--------~~~~~~~~~~~~~~~  311 (316)
                      |++|+|+  |-.        ..++..++.+++++.
T Consensus       223 Vivg~a~--~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (258)
T PRK01033        223 AAAGSLF--VFKGVYKAVLINYPNGDEKEELLKAG  255 (258)
T ss_pred             EEEccee--eeCcccccccccccHHHHHHHHHHcC
Confidence            9999999  545        566777777776553

>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=100.00  E-value=2.7e-43  Score=321.63  Aligned_cols=233  Identities=28%  Similarity=0.411  Sum_probs=211.8

Q ss_pred             ccEEEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCC----cccHHHHHHH
Q 021156           53 AVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGAD----PLSKAAAIEA  128 (316)
Q Consensus        53 ~~~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~----~~~~~~i~~~  128 (316)
                      .|+||||||+++|+|||+++|++++  |      ..+  .+||+++|+.|.+.|++++|++|+++.    ..+...+.++
T Consensus         2 ~~~iip~idl~~g~~v~~~~g~~~~--~------~~~--~~~~~e~a~~~~~~G~~~l~i~dl~~~~~~~~~~~~~i~~i   71 (241)
T PRK13585          2 SFEVIPAVDMKGGKCVQLVQGEPGT--E------TVS--YGDPVEVAKRWVDAGAETLHLVDLDGAFEGERKNAEAIEKI   71 (241)
T ss_pred             CeEEEEEEEeECCeEEEeeccccCC--c------eEE--CCCHHHHHHHHHHcCCCEEEEEechhhhcCCcccHHHHHHH
Confidence            5899999999999999999987541  1      233  369999999999999999999999965    2456667777


Q ss_pred             HHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCc
Q 021156          129 LHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRW  207 (316)
Q Consensus       129 v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw  207 (316)
                      ++.+++|+++||||| .++++.++++||++|++|++.+++    |+++.++.+.||++++++++|++  ++  .+.++||
T Consensus        72 ~~~~~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~~~----~~~~~~i~~~~g~~~i~~sid~~--~~--~v~~~g~  143 (241)
T PRK13585         72 IEAVGVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAVEN----PEIVRELSEEFGSERVMVSLDAK--DG--EVVIKGW  143 (241)
T ss_pred             HHHcCCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHhhC----hHHHHHHHHHhCCCcEEEEEEee--CC--EEEECCC
Confidence            778899999999999 599999999999999999999997    99999999999999999999998  66  5778999


Q ss_pred             ceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEE
Q 021156          208 QKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTV  287 (316)
Q Consensus       208 ~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gViv  287 (316)
                      .+.++.++.++++.+.+.|++++++|+++++|+..|+|+++++++++.+++||+++|||++.+|+.++++.|  +++|++
T Consensus       144 ~~~~~~~~~~~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~i~~i~~~~~iPvia~GGI~~~~di~~~~~~G--a~gv~v  221 (241)
T PRK13585        144 TEKTGYTPVEAAKRFEELGAGSILFTNVDVEGLLEGVNTEPVKELVDSVDIPVIASGGVTTLDDLRALKEAG--AAGVVV  221 (241)
T ss_pred             cccCCCCHHHHHHHHHHcCCCEEEEEeecCCCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcC--CCEEEE
Confidence            987777899999999999999999999999999999999999999999999999999999999999998888  999999


Q ss_pred             ccchhhccCcccHHHHHHHH
Q 021156          288 GSALDIFGGNLAYKDVVAWH  307 (316)
Q Consensus       288 G~Al~~~~g~~~~~~~~~~~  307 (316)
                      |+++  |++++.+++++++.
T Consensus       222 gsa~--~~~~~~~~~~~~~~  239 (241)
T PRK13585        222 GSAL--YKGKFTLEEAIEAV  239 (241)
T ss_pred             EHHH--hcCCcCHHHHHHHh
Confidence            9999  99999999987764

>PLN02617 imidazole glycerol phosphate synthase hisHF

Probab=100.00  E-value=1.4e-43  Score=354.87  Aligned_cols=247  Identities=21%  Similarity=0.274  Sum_probs=210.4

Q ss_pred             ccccccEEEEEEEeeC---C--eEEEEEcccc--------cCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEe
Q 021156           49 SVRCAVRFRPCIDIHK---G--KVKQIVGSTL--------QDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIML  115 (316)
Q Consensus        49 ~~~~~~~iIP~IDi~~---G--~vvr~~~g~~--------~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDL  115 (316)
                      +..+++|||||+|+++   |  .||+  +-+|        ++.+|           -+||+++|+.|+++|++++|++||
T Consensus       223 ~~~l~~riip~l~v~~~~~g~~~v~k--g~~f~~~~~~~~~~~~~-----------~gdPve~a~~y~~~Gadel~~~Di  289 (538)
T PLN02617        223 SKSLAKRVIACLDVRSNDKGDLVVTK--GDQYDVREHSEGREVRN-----------LGKPVELAGQYYKDGADEVAFLNI  289 (538)
T ss_pred             ccCccceEEEEEEeecCCCCceEEee--cccccccccccccCCCc-----------CCCHHHHHHHHHHcCCCEEEEEEC
Confidence            3567899999999997   6  4555  5566        22222           379999999999999999999999


Q ss_pred             cCCc---cc----HHHHHHHHHhCCCcEEEecCCCH------------HHHHHHHHcCCCEEEeCCeeecCC--------
Q 021156          116 GADP---LS----KAAAIEALHAYPGGLQVGGGINS------------DNSLSYIEEGATHVIVTSYVFNNG--------  168 (316)
Q Consensus       116 da~~---~~----~~~i~~~v~~~~~pl~vGGGIr~------------e~~~~~l~~Gad~VVigt~~~~~~--------  168 (316)
                      ++..   ..    .+.+.++++.+++|++||||||+            |+++++|++|||+|+|||.+++++        
T Consensus       290 ~~~~~~~~~~~~~~~~i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~GadkV~i~s~Av~~~~~~~~~~~  369 (538)
T PLN02617        290 TGFRDFPLGDLPMLEVLRRASENVFVPLTVGGGIRDFTDANGRYYSSLEVASEYFRSGADKISIGSDAVYAAEEYIASGV  369 (538)
T ss_pred             CCCcCCcccchhHHHHHHHHHhhCCCCEEEcCCccccccccccccchHHHHHHHHHcCCCEEEEChHHHhChhhhhcccc
Confidence            9852   22    33445555678999999999994            559999999999999999999862        


Q ss_pred             CCCHHHHHHHHHHhcCceEEEeeeeeec--------------------CCe----eEEEeCCcceecccCHHHHHHHHHH
Q 021156          169 QMDLERLKDLVRVVGKQRLVLDLSCRKK--------------------DGK----YAIVTDRWQKFSDVYLDERVLDFLA  224 (316)
Q Consensus       169 ~~~~eli~ei~~~~G~~~IvvslD~k~~--------------------~g~----~~v~~~gw~~~~~~~~~e~a~~~~~  224 (316)
                      +.+|+++++++++||+|+|+++||+|..                    +|+    |.|+++||++.++++++++++++++
T Consensus       370 ~~~p~~i~~~~~~fg~q~ivvsiD~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~~~~~~~~  449 (538)
T PLN02617        370 KTGKTSIEQISRVYGNQAVVVSIDPRRVYVKDPSDVPFKTVKVTNPGPNGEEYAWYQCTVKGGREGRPIGAYELAKAVEE  449 (538)
T ss_pred             ccCHHHHHHHHHHcCCceEEEEEecCcCcccCccccccccccccccCcCcccceEEEEEEecCcccCCCCHHHHHHHHHh
Confidence            2357999999999999999999999721                    111    7799999999999999999999999


Q ss_pred             cCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHH
Q 021156          225 SYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVV  304 (316)
Q Consensus       225 ~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~  304 (316)
                      +|+++|++|++++|||++|+|+++++.+++.+++|||+|||+++++|+.++++.+ ++++++.|+.+  |-+..++.+++
T Consensus       450 ~Gageil~t~id~DGt~~G~d~~l~~~v~~~~~ipviasGG~g~~~d~~~~~~~~-~~~a~~aa~~f--h~~~~~~~~~k  526 (538)
T PLN02617        450 LGAGEILLNCIDCDGQGKGFDIELVKLVSDAVTIPVIASSGAGTPEHFSDVFSKT-NASAALAAGIF--HRKEVPISSVK  526 (538)
T ss_pred             cCCCEEEEeeccccccccCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHhcC-CccEEEEEeee--ccCCCCHHHHH
Confidence            9999999999999999999999999999999999999999999999999999865 47888888777  66789999999


Q ss_pred             HHHHhhc
Q 021156          305 AWHAQQE  311 (316)
Q Consensus       305 ~~~~~~~  311 (316)
                      +++.+..
T Consensus       527 ~~l~~~g  533 (538)
T PLN02617        527 EHLLEEG  533 (538)
T ss_pred             HHHHHCC
Confidence            9988754

>TIGR00734 hisAF_rel hisA/hisF family protein

Probab=100.00  E-value=1.4e-43  Score=320.17  Aligned_cols=216  Identities=19%  Similarity=0.177  Sum_probs=184.2

Q ss_pred             cEEEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCCc--ccHHHHHHHHHh
Q 021156           54 VRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADP--LSKAAAIEALHA  131 (316)
Q Consensus        54 ~~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~~--~~~~~i~~~v~~  131 (316)
                      |||||+||+++|+|||+++|+|+  .|+|.+..+.|  .+||+++|+.|++.|++++|++|||+..  ..+..+++.+.+
T Consensus         1 m~iIP~iDl~~g~~Vr~~~G~~~--~~~~~~~~~~~--~~dP~~~a~~~~~~g~~~l~ivDLd~~~~~~~n~~~i~~i~~   76 (221)
T TIGR00734         1 MKIIPVIDLKDGIAVAGKSGERE--SYPPLESVSRL--SSSPDDAAKVIEEIGARFIYIADLDRIVGLGDNFSLLSKLSK   76 (221)
T ss_pred             CEEEEEEEeeCCEEEEccccCcc--cccccccceec--CCCHHHHHHHHHHcCCCEEEEEEcccccCCcchHHHHHHHHh
Confidence            79999999999999999999876  44443222344  4799999999999999999999999873  334444444433


Q ss_pred             CCCcEEEecCCC-HHHHHHHHH--cCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcc
Q 021156          132 YPGGLQVGGGIN-SDNSLSYIE--EGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQ  208 (316)
Q Consensus       132 ~~~pl~vGGGIr-~e~~~~~l~--~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~  208 (316)
                      . .|+|+||||| .|++++++.  .||++||+||+++++    |++++++.       +++|+|++  +|  .+.+.||.
T Consensus        77 ~-~~v~vgGGirs~e~~~~~~~~l~~a~rvvigT~a~~~----p~~l~~~~-------~vvslD~~--~g--~v~~~g~~  140 (221)
T TIGR00734        77 R-VELIADCGVRSPEDLETLPFTLEFASRVVVATETLDI----TELLRECY-------TVVSLDFK--EK--FLDASGLF  140 (221)
T ss_pred             h-CcEEEcCccCCHHHHHHHHhhhccceEEeecChhhCC----HHHHHHhh-------hEEEEEeE--CC--cccccccc
Confidence            2 4899999999 599999976  369999999999998    99998874       48999998  66  46778998


Q ss_pred             eecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEc
Q 021156          209 KFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVG  288 (316)
Q Consensus       209 ~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG  288 (316)
                      +    ++.++...+.+.|+ ++++||+++|||++|+|+++++++++.+++|||++||++|++|+.++++.|  +++|++|
T Consensus       141 ~----~~~~~~~~~~~~g~-~ii~tdI~~dGt~~G~d~eli~~i~~~~~~pvia~GGi~s~ed~~~l~~~G--a~~vivg  213 (221)
T TIGR00734       141 E----SLEEVRDFLNSFDY-GLIVLDIHSVGTMKGPNLELLTKTLELSEHPVMLGGGISGVEDLELLKEMG--VSAVLVA  213 (221)
T ss_pred             c----cHHHHHHHHHhcCC-EEEEEECCccccCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHCC--CCEEEEh
Confidence            5    57788888888998 789999999999999999999999999999999999999999999999988  9999999


Q ss_pred             cchhhccCcc
Q 021156          289 SALDIFGGNL  298 (316)
Q Consensus       289 ~Al~~~~g~~  298 (316)
                      +|+  |+|++
T Consensus       214 sal--~~g~i  221 (221)
T TIGR00734       214 TAV--HKGKI  221 (221)
T ss_pred             HHh--hCCCC
Confidence            999  99874

This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.

>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated

Probab=100.00  E-value=3.2e-43  Score=319.34  Aligned_cols=227  Identities=24%  Similarity=0.396  Sum_probs=204.6

Q ss_pred             cEEEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCCc----ccHHHHHHHH
Q 021156           54 VRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADP----LSKAAAIEAL  129 (316)
Q Consensus        54 ~~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~~----~~~~~i~~~v  129 (316)
                      |+|||+||+++|+|||+++|+++.        .+.+  ..||+++|+.|++.|++++|++|||+..    .+.+.+.++.
T Consensus         1 m~iip~iD~~~g~~v~~~~G~~~~--------~~~~--~~~~~~~a~~~~~~g~~~i~v~dld~~~~g~~~~~~~i~~i~   70 (233)
T PRK00748          1 MIIIPAIDLKDGKCVRLYQGDYDQ--------ATVY--SDDPVAQAKAWEDQGAKWLHLVDLDGAKAGKPVNLELIEAIV   70 (233)
T ss_pred             CeEEEEEEEECCeEEEcccccccc--------ceEe--cCCHHHHHHHHHHcCCCEEEEEeCCccccCCcccHHHHHHHH
Confidence            689999999999999999887542        2334  3699999999999999999999999862    4555555555


Q ss_pred             HhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcc
Q 021156          130 HAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQ  208 (316)
Q Consensus       130 ~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~  208 (316)
                      +.+++|+++||||| .+|+++++++||++|++|++.+++    |++++++.+.| ++++++++|+|  ++  .+.+++|.
T Consensus        71 ~~~~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~l~~----~~~l~ei~~~~-~~~i~vsid~k--~~--~v~~~g~~  141 (233)
T PRK00748         71 KAVDIPVQVGGGIRSLETVEALLDAGVSRVIIGTAAVKN----PELVKEACKKF-PGKIVVGLDAR--DG--KVATDGWL  141 (233)
T ss_pred             HHCCCCEEEcCCcCCHHHHHHHHHcCCCEEEECchHHhC----HHHHHHHHHHh-CCCceeeeecc--CC--EEEEccCe
Confidence            67889999999999 599999999999999999999997    99999999999 57899999998  55  68889998


Q ss_pred             eecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEc
Q 021156          209 KFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVG  288 (316)
Q Consensus       209 ~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG  288 (316)
                      +.+..++.++++.+.+.|++++++|+++++|+++|+|+++++++++.+++|+|++||+++++|+.++++.| +++||++|
T Consensus       142 ~~~~~~~~e~~~~~~~~g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~~~ipvia~GGi~~~~di~~~~~~g-~~~gv~vg  220 (233)
T PRK00748        142 ETSGVTAEDLAKRFEDAGVKAIIYTDISRDGTLSGPNVEATRELAAAVPIPVIASGGVSSLDDIKALKGLG-AVEGVIVG  220 (233)
T ss_pred             ecCCCCHHHHHHHHHhcCCCEEEEeeecCcCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcC-CccEEEEE
Confidence            87788899999999999999999999999999999999999999998899999999999999999999987 69999999


Q ss_pred             cchhhccCcccHHH
Q 021156          289 SALDIFGGNLAYKD  302 (316)
Q Consensus       289 ~Al~~~~g~~~~~~  302 (316)
                      +|+  |.|.++++|
T Consensus       221 ~a~--~~~~~~~~~  232 (233)
T PRK00748        221 RAL--YEGKFDLAE  232 (233)
T ss_pred             HHH--HcCCcCccc
Confidence            999  999998876

>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase

Probab=100.00  E-value=7.9e-43  Score=316.48  Aligned_cols=224  Identities=25%  Similarity=0.415  Sum_probs=202.0

Q ss_pred             EEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCCc----ccHHHHHHHHHh
Q 021156           56 FRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADP----LSKAAAIEALHA  131 (316)
Q Consensus        56 iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~~----~~~~~i~~~v~~  131 (316)
                      |||+||+++|+|||+++|++++  |      +++  ..||+++|+.|++.|++++|++|||+..    .|.+.+.++.+.
T Consensus         1 iip~id~~~g~~v~~~~G~~~~--~------~~~--~~dp~~~a~~~~~~g~~~l~v~dl~~~~~g~~~~~~~i~~i~~~   70 (230)
T TIGR00007         1 IIPAIDIKDGKCVRLYQGDYDK--E------TVY--GDDPVEAAKKWEEEGAERIHVVDLDGAKEGGPVNLPVIKKIVRE   70 (230)
T ss_pred             CEeEEEeeCCEEEEeeccccCc--c------eEe--cCCHHHHHHHHHHcCCCEEEEEeCCccccCCCCcHHHHHHHHHh
Confidence            6999999999999999987652  2      334  3699999999999999999999999862    244445555566


Q ss_pred             CCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCccee
Q 021156          132 YPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKF  210 (316)
Q Consensus       132 ~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~  210 (316)
                      +++|+++||||| .+++++++++||++|++||..+++    |+.+.++++++|++++++++|+|  +|  .+.++||++.
T Consensus        71 ~~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~d----~~~~~~~~~~~g~~~i~~sid~~--~~--~v~~~g~~~~  142 (230)
T TIGR00007        71 TGVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVEN----PDLVKELLKEYGPERIVVSLDAR--GG--EVAVKGWLEK  142 (230)
T ss_pred             cCCCEEEeCCcCCHHHHHHHHHcCCCEEEEChHHhhC----HHHHHHHHHHhCCCcEEEEEEEE--CC--EEEEcCCccc
Confidence            889999999999 599999999999999999999997    99999999999989999999998  67  5888999987


Q ss_pred             cccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccc
Q 021156          211 SDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSA  290 (316)
Q Consensus       211 ~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~A  290 (316)
                      +..++.++++.+.+.|++++++|+++++|+..|+|+++++++++.+++|++++|||++.+|++++++.|  +++|++|++
T Consensus       143 ~~~~~~~~~~~~~~~g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~~~ipvia~GGi~~~~di~~~~~~G--adgv~ig~a  220 (230)
T TIGR00007       143 SEVSLEELAKRLEELGLEGIIYTDISRDGTLSGPNFELTKELVKAVNVPVIASGGVSSIDDLIALKKLG--VYGVIVGKA  220 (230)
T ss_pred             CCCCHHHHHHHHHhCCCCEEEEEeecCCCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHCC--CCEEEEeHH
Confidence            778899999999999999999999999999999999999999998999999999999999999999987  999999999


Q ss_pred             hhhccCcccHH
Q 021156          291 LDIFGGNLAYK  301 (316)
Q Consensus       291 l~~~~g~~~~~  301 (316)
                      +  |.+.++++
T Consensus       221 ~--~~~~~~~~  229 (230)
T TIGR00007       221 L--YEGKITLE  229 (230)
T ss_pred             H--HcCCCCCC
Confidence            9  99998865

Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).

>cd04732 HisA HisA

Probab=100.00  E-value=8.6e-42  Score=309.94  Aligned_cols=228  Identities=26%  Similarity=0.430  Sum_probs=204.7

Q ss_pred             EEEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCCc----ccHHHHHHHHH
Q 021156           55 RFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADP----LSKAAAIEALH  130 (316)
Q Consensus        55 ~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~~----~~~~~i~~~v~  130 (316)
                      .||||||++||+|||.++|+|..  |      ..+  ..+|.++|+.|.+.|++++|++||++..    .+.+.+.++.+
T Consensus         1 ~iip~idl~~g~~v~~~~G~~~~--~------~~~--~~dp~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~   70 (234)
T cd04732           1 IIIPAIDLKDGKCVRLYQGDYDK--K------TVY--SDDPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVK   70 (234)
T ss_pred             CEEEEEEeECCEEEEeecccCCC--C------eEE--CCCHHHHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHH
Confidence            48999999999999999998752  1      223  3699999999999999999999999762    24555555556


Q ss_pred             hCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcce
Q 021156          131 AYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQK  209 (316)
Q Consensus       131 ~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~  209 (316)
                      .+++|+++||||+ .+++++++++|||+|++|+..+.+    |++++++.+.||++++++++|++  ++  .+.+.+|.+
T Consensus        71 ~~~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l~d----p~~~~~i~~~~g~~~i~~sid~~--~~--~~~~~~~~~  142 (234)
T cd04732          71 AVGIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAVKN----PELVKELLKEYGGERIVVGLDAK--DG--KVATKGWLE  142 (234)
T ss_pred             hcCCCEEEeCCcCCHHHHHHHHHcCCCEEEECchHHhC----hHHHHHHHHHcCCceEEEEEEee--CC--EEEECCCee
Confidence            6889999999999 599999999999999999999997    99999999999988999999998  66  566788987


Q ss_pred             ecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEcc
Q 021156          210 FSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGS  289 (316)
Q Consensus       210 ~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~  289 (316)
                      .+..++.++++.+.+.|++++++|+++++|+..|+|+++++++++.+++|++++||+++.+|+.++++.|  +++|++|+
T Consensus       143 ~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~~~ipvi~~GGi~~~~di~~~~~~G--a~gv~vg~  220 (234)
T cd04732         143 TSEVSLEELAKRFEELGVKAIIYTDISRDGTLSGPNFELYKELAAATGIPVIASGGVSSLDDIKALKELG--VAGVIVGK  220 (234)
T ss_pred             ecCCCHHHHHHHHHHcCCCEEEEEeecCCCccCCCCHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHCC--CCEEEEeH
Confidence            7778899999999999999999999999999999999999999999999999999999999999999987  99999999


Q ss_pred             chhhccCcccHHHHH
Q 021156          290 ALDIFGGNLAYKDVV  304 (316)
Q Consensus       290 Al~~~~g~~~~~~~~  304 (316)
                      ++  |.|++++++++
T Consensus       221 ~~--~~~~~~~~~~~  233 (234)
T cd04732         221 AL--YEGKITLEEAL  233 (234)
T ss_pred             HH--HcCCCCHHHHh
Confidence            99  99999988764

Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.

>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=100.00  E-value=2.1e-39  Score=296.57  Aligned_cols=236  Identities=22%  Similarity=0.295  Sum_probs=208.4

Q ss_pred             cEEEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCC----cccHHHHHHHH
Q 021156           54 VRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGAD----PLSKAAAIEAL  129 (316)
Q Consensus        54 ~~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~----~~~~~~i~~~v  129 (316)
                      ++|||+||+++|+||++.+.+          . ..+  ..+|.++|+.|+++|++++|++|+++.    +.+.+.+.++.
T Consensus         1 ~~ii~~iD~~~g~~v~~~~~~----------~-~~~--~~d~~~~a~~~~~~G~~~i~i~d~~~~~~~~~~~~~~i~~i~   67 (243)
T cd04731           1 KRIIPCLDVKDGRVVKGVNFK----------N-LRD--AGDPVELAKRYNEQGADELVFLDITASSEGRETMLDVVERVA   67 (243)
T ss_pred             CeEEEEEEEECCeEEEeEccc----------c-cee--CCCHHHHHHHHHHCCCCEEEEEcCCcccccCcccHHHHHHHH
Confidence            489999999999999987532          1 122  258999999999999999999999965    23444455555


Q ss_pred             HhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCC-eeEEEeCCc
Q 021156          130 HAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDG-KYAIVTDRW  207 (316)
Q Consensus       130 ~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g-~~~v~~~gw  207 (316)
                      +.+++|++++|||+ .++++++++.||+.|++|+.++++    |+++.++.+.|+++++++++|+|.+.+ .+.|.+++|
T Consensus        68 ~~~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~~~----p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~  143 (243)
T cd04731          68 EEVFIPLTVGGGIRSLEDARRLLRAGADKVSINSAAVEN----PELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGG  143 (243)
T ss_pred             HhCCCCEEEeCCCCCHHHHHHHHHcCCceEEECchhhhC----hHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCC
Confidence            56889999999999 599999999999999999999998    999999999998889999999985321 258999999


Q ss_pred             ceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEE
Q 021156          208 QKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTV  287 (316)
Q Consensus       208 ~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gViv  287 (316)
                      .+.+..+..++++.+.+.|++++++|+++++|+.+|+|+++++++++.+++|||++|||++++|+.++++.+ |+++|++
T Consensus       144 ~~~~~~~~~~~~~~l~~~G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~-g~dgv~v  222 (243)
T cd04731         144 RKPTGLDAVEWAKEVEELGAGEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEG-GADAALA  222 (243)
T ss_pred             ceecCCCHHHHHHHHHHCCCCEEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhC-CCCEEEE
Confidence            988888999999999999999999999999999999999999999998899999999999999999999983 3999999


Q ss_pred             ccchhhccCcccHHHHHHHHHh
Q 021156          288 GSALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       288 G~Al~~~~g~~~~~~~~~~~~~  309 (316)
                      |+|+  |+|.+++++++++++.
T Consensus       223 g~al--~~~~~~~~~~~~~~~~  242 (243)
T cd04731         223 ASIF--HFGEYTIAELKEYLAE  242 (243)
T ss_pred             eHHH--HcCCCCHHHHHHHHhh
Confidence            9999  9999999999888753

Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.

>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ

Probab=100.00  E-value=3.5e-38  Score=286.66  Aligned_cols=221  Identities=21%  Similarity=0.293  Sum_probs=194.5

Q ss_pred             cccEEEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCCc----ccHHHHHH
Q 021156           52 CAVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADP----LSKAAAIE  127 (316)
Q Consensus        52 ~~~~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~~----~~~~~i~~  127 (316)
                      +..+|||+||+++|++|++++++.       +   + +  ..+|+++|+.|++.|++++|++||++..    .+.+.+.+
T Consensus         2 ~~~~ii~~iD~~~g~~V~~~~~~~-------~---~-~--~~dp~~~a~~~~~~g~~~i~i~dl~~~~~~~~~n~~~~~~   68 (232)
T TIGR03572         2 LKKRIIPCLLLKDGRLVKTVQFKD-------P---R-Y--IGDPVNAARIYNAKGADELIVLDIDASKRGREPLFELISN   68 (232)
T ss_pred             CCceEEEEEEEECCeEEEeeccCC-------C---e-E--CCCHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCHHHHHH
Confidence            467999999999999999875321       1   1 2  2589999999999999999999999762    45555566


Q ss_pred             HHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeec--CCeeEEEe
Q 021156          128 ALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKK--DGKYAIVT  204 (316)
Q Consensus       128 ~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~--~g~~~v~~  204 (316)
                      +.+.+++|+++|||+| .++++++++.||+.|++|++.+++    |++++++.+.||.++|++++|++..  .+.|.+.+
T Consensus        69 i~~~~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~l~~----~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~  144 (232)
T TIGR03572        69 LAEECFMPLTVGGGIRSLEDAKKLLSLGADKVSINTAALEN----PDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYS  144 (232)
T ss_pred             HHHhCCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhcC----HHHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEE
Confidence            6667899999999999 599999999999999999999998    9999999999987789999999831  11157999


Q ss_pred             CCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHH-HHHhCCCcC
Q 021156          205 DRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEK-IKVAGIGRV  283 (316)
Q Consensus       205 ~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~-l~~~G~g~~  283 (316)
                      ++|++.+..++.+.++.+.+.|++++++|+++++|+..|+|+++++++++.+++||+++||+++.+|+.+ +.+.|  ++
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~G~d~i~i~~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~l~~~g--ad  222 (232)
T TIGR03572       145 DNGRRATGRDPVEWAREAEQLGAGEILLNSIDRDGTMKGYDLELIKTVSDAVSIPVIALGGAGSLDDLVEVALEAG--AS  222 (232)
T ss_pred             CCCcccCCCCHHHHHHHHHHcCCCEEEEeCCCccCCcCCCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHHcC--CC
Confidence            9999888888999999999999999999999999999999999999999999999999999999999999 66666  99


Q ss_pred             EEEEccch
Q 021156          284 DVTVGSAL  291 (316)
Q Consensus       284 gVivG~Al  291 (316)
                      +|++|+|+
T Consensus       223 gV~vg~a~  230 (232)
T TIGR03572       223 AVAAASLF  230 (232)
T ss_pred             EEEEehhh
Confidence            99999999

This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr

>KOG3055 consensus Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]

Probab=100.00  E-value=2.3e-38  Score=272.25  Aligned_cols=260  Identities=69%  Similarity=1.125  Sum_probs=235.5

Q ss_pred             cccccEEEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHH
Q 021156           50 VRCAVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEAL  129 (316)
Q Consensus        50 ~~~~~~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v  129 (316)
                      +.+..+++|||||.+|+|.++++|...+-+  +-.+.|+|.|+.....+|+.|.+.+..+-|++.|.  +.+....+.++
T Consensus         3 ~~~~t~FrpCIDiH~G~VKQIVGgTL~~~d--~dV~kTNfvS~kpssyYAklYK~~~l~G~HVImLG--Pn~~~AA~~AL   78 (263)
T KOG3055|consen    3 LISATQFRPCIDIHKGKVKQIVGGTLRDLD--GDVLKTNFVSDKPSSYYAKLYKEDGLTGGHVIMLG--PNSQAAAIGAL   78 (263)
T ss_pred             cccccceecceeeccCeeeeeeccccccCc--CCcccccccccCchHHHHHHHhhcCCCcceEEEEC--CCcHHHHHHHH
Confidence            456788999999999999999998775422  22346889876666689999999999999999996  45666778888


Q ss_pred             HhCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcce
Q 021156          130 HAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQK  209 (316)
Q Consensus       130 ~~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~  209 (316)
                      .+.+.-+||||||+++.+..+++.||++||+.|..+++|+++.+.++++++..|++|+++.+.+|+++|+|.+.++.|+.
T Consensus        79 h~~Pg~LQvGGGIN~~Nc~~wl~egASkVIVTSwlF~~g~fdL~RLk~i~s~~GKdRlvvDlSCRkkDgRw~~a~nkWQ~  158 (263)
T KOG3055|consen   79 HAYPGGLQVGGGINSENCMSWLEEGASKVIVTSWLFNNGKFDLERLKDIVSIVGKDRLVVDLSCRKKDGRWAIATNKWQK  158 (263)
T ss_pred             HhCCCceeecCccChHHHHHHHHhcCceEEEEEEeccCCcccHHHHHHHHHHhCcceEEEEeeeeccCCeEEEEechhhh
Confidence            88999999999999999999999999999999999999999999999999999999999999999889999999999999


Q ss_pred             ecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEcc
Q 021156          210 FSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGS  289 (316)
Q Consensus       210 ~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~  289 (316)
                      .+++.+-+..-++.....+++++|..|.+|...|+|.+++.++-+.+++|+.++||+++++|++.+.+++.|--.+.+|+
T Consensus       159 ~td~eLne~~l~~L~~y~~EFLiHaaDVEGlc~GIDE~LV~kLgew~kip~tYAGG~~s~dDl~lvd~lskGkVDlT~GS  238 (263)
T KOG3055|consen  159 FTDVELNEKSLEFLGGYSDEFLIHAADVEGLCLGIDEELVAKLGEWSKIPVTYAGGVTSMDDLELVDDLSKGKVDLTVGS  238 (263)
T ss_pred             hhheeeCHHHHHHHhccchhheeeccccchhhcCccHHHHHHhccceecceEEecCceehhHHHHHHhhcCCceeEEecc
Confidence            88877777777777777999999999999999999999999999999999999999999999999999987788899999


Q ss_pred             chhhccCcccHHHHHHHHHhhccc
Q 021156          290 ALDIFGGNLAYKDVVAWHAQQEAL  313 (316)
Q Consensus       290 Al~~~~g~~~~~~~~~~~~~~~~~  313 (316)
                      |+++|+|.+.|+++.+|.++|..+
T Consensus       239 aLDIFGG~l~f~dvvaWn~kq~~l  262 (263)
T KOG3055|consen  239 ALDIFGGNLPFKDVVAWNHKQHSL  262 (263)
T ss_pred             hhhhhcCCcchhhhhhcccccCCC
Confidence            999999999999999999988764

>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]

Probab=99.97  E-value=3.7e-30  Score=222.96  Aligned_cols=221  Identities=23%  Similarity=0.254  Sum_probs=185.1

Q ss_pred             cEEEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCCc--ccHHHHHHHHHh
Q 021156           54 VRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADP--LSKAAAIEALHA  131 (316)
Q Consensus        54 ~~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~~--~~~~~i~~~v~~  131 (316)
                      |+++|+|||++|+||..++|+|+  +|+|..  ..|+.++||+++|+.+...|++.+|++|||+..  ..+..+++.+..
T Consensus         1 m~vi~viDik~g~vV~gKsg~re--~Y~Pis--~~~~~s~dP~eia~~lr~rgar~vYiADLdaI~g~g~n~d~i~~l~~   76 (229)
T COG1411           1 MKVIFVIDIKDGKVVVGKSGERE--EYRPIS--SRYCLSDDPLEIAEALRERGARFVYIADLDAILGGGDNADTIRELSS   76 (229)
T ss_pred             CceEEEEEeccCcEEeccCCCcc--cccCcc--eeecCCCChHHHHHHHhhccCceEEeeehHHHhcCCCcHHHHHHHHh
Confidence            78999999999999999999987  777744  477778899999999999999999999999862  345555555543


Q ss_pred             CCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCccee
Q 021156          132 YPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKF  210 (316)
Q Consensus       132 ~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~  210 (316)
                      . .+++++-|+| .++.++.+.. +++.+++|+.+++    .+..++       .++++|+|+|  +++  + ...|.+ 
T Consensus        77 ~-~~~ivD~Gv~dL~s~~~~l~~-~~~~vv~TEt~e~----~e~~e~-------~r~vvslD~k--~~~--L-l~~~~e-  137 (229)
T COG1411          77 L-EKVIVDVGVRDLESHAHRLIP-AETAVVGTETLED----TEEDEE-------GRIVVSLDVK--GGE--L-LGPWLE-  137 (229)
T ss_pred             h-hhheeecccccccCHHHhcCC-Ccceeeccchhhh----hhhhhc-------cceEEEEecC--CCe--e-cCCCch-
Confidence            2 3489999999 5887777764 7899999999986    555444       5899999998  552  2 245532 


Q ss_pred             cccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccc
Q 021156          211 SDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSA  290 (316)
Q Consensus       211 ~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~A  290 (316)
                         +.+|..+.+....-.-+|+.|+++.||++|||.|++..+...+..||+.+|||+.+||++.+..+|  ++||++|+|
T Consensus       138 ---d~le~Vk~l~~~~~~~lIvLDi~aVGt~~G~~~E~l~~~~~~s~~pVllGGGV~g~Edlel~~~~G--v~gvLvaTa  212 (229)
T COG1411         138 ---DFLETVKDLNYRRDPGLIVLDIGAVGTKSGPDYELLTKVLELSEHPVLLGGGVGGMEDLELLLGMG--VSGVLVATA  212 (229)
T ss_pred             ---hHHHHHHHHhccCCCCeEEEEccccccccCCCHHHHHHHHHhccCceeecCCcCcHHHHHHHhcCC--Cceeeehhh
Confidence               467778888777777789999999999999999999999999999999999999999999999998  999999999


Q ss_pred             hhhccCcccHHHHH
Q 021156          291 LDIFGGNLAYKDVV  304 (316)
Q Consensus       291 l~~~~g~~~~~~~~  304 (316)
                      +  |+|.++++...
T Consensus       213 l--h~G~vple~~~  224 (229)
T COG1411         213 L--HEGVVPLEVEQ  224 (229)
T ss_pred             h--hcCcCcHHHHh
Confidence            9  99999987653

>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]

Probab=99.92  E-value=2.5e-24  Score=199.78  Aligned_cols=253  Identities=21%  Similarity=0.285  Sum_probs=193.5

Q ss_pred             ccccEEEEEEEeeCCe----EEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCC---cccHH
Q 021156           51 RCAVRFRPCIDIHKGK----VKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGAD---PLSKA  123 (316)
Q Consensus        51 ~~~~~iIP~IDi~~G~----vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~---~~~~~  123 (316)
                      .+..|||.|+|++..-    ||.  +|+-++.+.+.  .....-.-+.|+++|..|.+.|++++.+..+..-   +....
T Consensus       227 gLtkRiIACLDVRtND~GDLVVT--KGDQYDVREkS--~g~eVRNLGKPV~Laq~Yyq~GADEv~FLNITsFRdcPl~D~  302 (541)
T KOG0623|consen  227 GLTKRIIACLDVRTNDKGDLVVT--KGDQYDVREKS--NGNEVRNLGKPVDLAQQYYQDGADEVSFLNITSFRDCPLGDL  302 (541)
T ss_pred             hhhhhheeeeeeeccCCCceEEe--cCcccchhhcc--CchhhhccCChHHHHHHHHhcCCceeEEEeeccccCCCcccC
Confidence            5668999999997542    555  66422222111  1111112368999999999999999999988742   22333


Q ss_pred             HHHHHH----HhCCCcEEEecCCC-HH-----------HHHHHHHcCCCEEEeCCeeecC-------C-C-CCHHHHHHH
Q 021156          124 AAIEAL----HAYPGGLQVGGGIN-SD-----------NSLSYIEEGATHVIVTSYVFNN-------G-Q-MDLERLKDL  178 (316)
Q Consensus       124 ~i~~~v----~~~~~pl~vGGGIr-~e-----------~~~~~l~~Gad~VVigt~~~~~-------~-~-~~~eli~ei  178 (316)
                      .|++.+    +.+.+|++|||||| ..           -+..||..|||+|-|||-+..-       | + ....-++.+
T Consensus       303 PMlqVL~qaaktVFVPLTVGGGIrD~~D~dGt~~palEVA~~YFRSGADKvSIGsDAVyAAEkyye~G~k~~Gks~iEtI  382 (541)
T KOG0623|consen  303 PMLQVLRQAAKTVFVPLTVGGGIRDFTDADGTYYPALEVAAEYFRSGADKVSIGSDAVYAAEKYYESGVKGTGKSSIETI  382 (541)
T ss_pred             hHHHHHHHhhceEEEEEeecCcccccccCCCcCchhHHHHHHHHhcCCceeeechhHHHHHHHHHHhccCCCCcChHHHH
Confidence            344444    34779999999998 22           2567899999999999876532       2 1 124568999


Q ss_pred             HHHhcCceEEEeeeeeec------C--------------Ce----eEEEeCCcceecccCHHHHHHHHHHcCCCEEEEee
Q 021156          179 VRVVGKQRLVLDLSCRKK------D--------------GK----YAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHG  234 (316)
Q Consensus       179 ~~~~G~~~IvvslD~k~~------~--------------g~----~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtd  234 (316)
                      ++.||.|.+++|+|-|..      +              |+    |.+.++|+++..++..+|+.+.++.+|+++|+++.
T Consensus       383 SkaYGnQAVViSvDPkRvYVn~p~Dtk~kV~~t~~pGPNGE~YcWYQCTvkGGRE~Rdigv~ELtrAcEalGAGEiLLNC  462 (541)
T KOG0623|consen  383 SKAYGNQAVVISVDPKRVYVNHPDDTKYKVIRTTNPGPNGEEYCWYQCTVKGGREGRDIGVFELTRACEALGAGEILLNC  462 (541)
T ss_pred             HHHhCCeeEEEEeCCceeeecCCccCcceEEEecCCCCCCceeEEEEEEEcCCcccCccchhhHHHHHHHhCcchheeee
Confidence            999999999999997641      1              21    45567888888888999999999999999999999


Q ss_pred             cCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHHhh
Q 021156          235 VDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQQ  310 (316)
Q Consensus       235 i~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~~~  310 (316)
                      +|.||...|+|+|+++.+.+.++||||+|.|.+.+++++++++.. .+++++-+-.+  |.+.++++++++++...
T Consensus       463 iD~DGsn~GyDieLv~lvkdsV~IPVIASSGAG~P~HFeEvF~kT-~adAaLaAGiF--HR~e~~i~dVKEyL~eh  535 (541)
T KOG0623|consen  463 IDCDGSNKGYDIELVKLVKDSVGIPVIASSGAGTPDHFEEVFEKT-NADAALAAGIF--HRKEVPIQDVKEYLQEH  535 (541)
T ss_pred             eccCCCCCCcchhHHHHhhcccCCceEecCCCCCcHHHHHHHHhc-Cchhhhhccce--ecCccchHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999987 36555544444  56889999999988764

>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water

Probab=99.87  E-value=1.4e-20  Score=169.45  Aligned_cols=176  Identities=17%  Similarity=0.151  Sum_probs=142.9

Q ss_pred             ccCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHH-hCCCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeeecCCC
Q 021156           92 DKSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALH-AYPGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFNNGQ  169 (316)
Q Consensus        92 ~~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~-~~~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~~~~~  169 (316)
                      ..+|.++|+.|.+.|++++|++|+++.........+.++ .+++|++++|+++. ++++.++++|||.|++++..+.   
T Consensus        30 ~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~---  106 (217)
T cd00331          30 DFDPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAVSLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALD---  106 (217)
T ss_pred             CCCHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhcCCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCC---
Confidence            468999999999999999999999987533334444444 46899999999985 7899999999999999998876   


Q ss_pred             CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHH
Q 021156          170 MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELV  249 (316)
Q Consensus       170 ~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli  249 (316)
                        ++.++++.+.+    ....+|+       .+.+++|.         .++++.+.|++.+.+|  .++++..++|++.+
T Consensus       107 --~~~~~~~~~~~----~~~g~~~-------~v~v~~~~---------e~~~~~~~g~~~i~~t--~~~~~~~~~~~~~~  162 (217)
T cd00331         107 --DEQLKELYELA----RELGMEV-------LVEVHDEE---------ELERALALGAKIIGIN--NRDLKTFEVDLNTT  162 (217)
T ss_pred             --HHHHHHHHHHH----HHcCCeE-------EEEECCHH---------HHHHHHHcCCCEEEEe--CCCccccCcCHHHH
Confidence              57777777655    1234554       24444443         3667788999999999  56788889999999


Q ss_pred             HHHhhc--CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcc
Q 021156          250 ALLGKY--SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNL  298 (316)
Q Consensus       250 ~~l~~~--~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~  298 (316)
                      +++++.  .++|++++|||++++|+.++++.|  +++|+||+|+  |...-
T Consensus       163 ~~l~~~~~~~~pvia~gGI~s~edi~~~~~~G--a~gvivGsai--~~~~~  209 (217)
T cd00331         163 ERLAPLIPKDVILVSESGISTPEDVKRLAEAG--ADAVLIGESL--MRAPD  209 (217)
T ss_pred             HHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcC--CCEEEECHHH--cCCCC
Confidence            999876  478999999999999999999998  9999999999  86553

IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.

>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein

Probab=99.74  E-value=5e-18  Score=152.84  Aligned_cols=136  Identities=15%  Similarity=0.197  Sum_probs=108.5

Q ss_pred             CceeeecCCCCCCccccccccccCcccccccccEEEEE--EEeeCCe-EEEEEcccccCCCCCCCceeeecCCccCHHHH
Q 021156           22 SDLFWLHKNNNSSFYAPSSSLSRPSRLSVRCAVRFRPC--IDIHKGK-VKQIVGSTLQDSKDDGTKLVTNFESDKSAAEF   98 (316)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIP~--IDi~~G~-vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~   98 (316)
                      .-+|++++|||+|+||+|+. ++|.  +++++.++||+  |-+..|. |-++.+.             .+.+  -++.++
T Consensus        76 l~~svlNs~~~~~iig~~~~-~~~~--~~~~~~e~ip~gYiv~~~~~~v~~v~~a-------------~~~p--~~~~~~  137 (223)
T TIGR01768        76 FFPSVLNSDDPYWIIGAQIE-AAPK--FKKIGEEIIPEGYIIVNPGGAAARVTKA-------------KPIP--YDKEDL  137 (223)
T ss_pred             EEEEeecCCCchHHHhHHHH-HHHH--HhhhcceecceEEEEECCCcceeecccc-------------cccC--CCcHHH
Confidence            45899999999999999999 8888  58888999998  6676665 4444322             1111  245568


Q ss_pred             HHHHHHcC-CCcceEEEecCC----cccHHHHHHHHHh-C-CCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeeecCCCC
Q 021156           99 ANLYKEDG-LTGGHAIMLGAD----PLSKAAAIEALHA-Y-PGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFNNGQM  170 (316)
Q Consensus        99 a~~~~~~G-~~~l~lvDLda~----~~~~~~i~~~v~~-~-~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~~~~~~  170 (316)
                      |..++.++ +.+++++||+++    .+.+.++++.+++ . ++|+++|||||+ |++++++++|||+||+||.++++   
T Consensus       138 aa~~~lA~~~~g~~~vYlE~gs~~g~~v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~d---  214 (223)
T TIGR01768       138 AAYAAMAEEMLGMPIIYLEAGSGAPEPVPPELVAEVKKVLDKARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEED---  214 (223)
T ss_pred             HHHHHHHHHHcCCcEEEEEecCCCCCCcCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhhC---
Confidence            88888876 899999999954    3456667777764 5 799999999995 99999999999999999999998   


Q ss_pred             CHHHHHHHH
Q 021156          171 DLERLKDLV  179 (316)
Q Consensus       171 ~~eli~ei~  179 (316)
                       |+++.+.+
T Consensus       215 -p~~~~~~v  222 (223)
T TIGR01768       215 -VDKALETI  222 (223)
T ss_pred             -HHHHHHhh
Confidence             98887764

This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.

>cd02812 PcrB_like PcrB_like proteins

Probab=99.72  E-value=2.3e-17  Score=148.41  Aligned_cols=134  Identities=18%  Similarity=0.214  Sum_probs=104.1

Q ss_pred             CceeeecCCCCCCccccccccccCcccccc--cccEEEEE--EEeeCCe-EEEEEcccccCCCCCCCceeeecCCccCHH
Q 021156           22 SDLFWLHKNNNSSFYAPSSSLSRPSRLSVR--CAVRFRPC--IDIHKGK-VKQIVGSTLQDSKDDGTKLVTNFESDKSAA   96 (316)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iIP~--IDi~~G~-vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~   96 (316)
                      .-+|++++|||+|++|+|+. ++|..  ++  ...++||+  |-+..|. |-++.+.             .+   ..+|.
T Consensus        75 l~~svlns~n~~~i~g~~~~-~~~~~--~~~~~~~e~i~~gYiv~~~~~~v~~v~~a-------------~~---~~~~e  135 (219)
T cd02812          75 LFPSVLNSGDPYWIIGAQAE-AAPEV--GKIIPWLELIPEGYLVLNPDSTVARVTGA-------------KT---DLKPE  135 (219)
T ss_pred             EEEeeecCCCchHHHHHHHH-HHHHh--ccccccccccceEEEEECCCCceeeeecc-------------Cc---CCCHH
Confidence            45899999999999999999 88884  55  88999998  6676665 4454332             11   24676


Q ss_pred             HHHHHHHHcC-CCcceEEEecCC-cccHHHHHHHHH-hC-CCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeeecCCCCC
Q 021156           97 EFANLYKEDG-LTGGHAIMLGAD-PLSKAAAIEALH-AY-PGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFNNGQMD  171 (316)
Q Consensus        97 e~a~~~~~~G-~~~l~lvDLda~-~~~~~~i~~~v~-~~-~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~~~~~~~  171 (316)
                       .+..|+.++ ..++|++|||.. ...+..+++.++ .. +.|+++|||||+ |++++++++|||+||+||.++++    
T Consensus       136 -~~~ayA~aae~~g~~ivyLe~SG~~~~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai~~~----  210 (219)
T cd02812         136 -DAAAYALAAEYLGMPIVYLEYSGAYGPPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVEED----  210 (219)
T ss_pred             -HHHHHHHHHHHcCCeEEEeCCCCCcCCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEECchhhCC----
Confidence             455566654 666999999943 234555666665 56 899999999995 99999999999999999999997    


Q ss_pred             HHHHHHHH
Q 021156          172 LERLKDLV  179 (316)
Q Consensus       172 ~eli~ei~  179 (316)
                      |+++++++
T Consensus       211 p~~~~~~v  218 (219)
T cd02812         211 PNAALETV  218 (219)
T ss_pred             HHHHHHHh
Confidence            99988875

One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.

>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P)

Probab=99.71  E-value=2.9e-18  Score=154.75  Aligned_cols=138  Identities=20%  Similarity=0.225  Sum_probs=102.1

Q ss_pred             CCceeeecCCCCCCccccccccccCcccccccccEEEEE--EEeeCCeE-EEEEcccccCCCCCCCceeeecCCccCHHH
Q 021156           21 VSDLFWLHKNNNSSFYAPSSSLSRPSRLSVRCAVRFRPC--IDIHKGKV-KQIVGSTLQDSKDDGTKLVTNFESDKSAAE   97 (316)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIP~--IDi~~G~v-vr~~~g~~~~~~y~~~~~~~~~~~~~~p~e   97 (316)
                      -.-+|++++|||+|++|+|+. ++|.  ++++..++||+  |-+..|.- -++.+.             .+.+  -+..+
T Consensus        79 il~~svlNs~n~~~iig~~~~-aa~~--~~~~~~e~ip~gYivi~~g~~v~~v~~a-------------~pi~--~~~~~  140 (230)
T PF01884_consen   79 ILFPSVLNSRNPYWIIGAQVE-AAPL--IKKLGLEVIPTGYIVINPGSKVARVTGA-------------RPIP--LDKPE  140 (230)
T ss_dssp             EEEEEETTBSSTTTTTHHHHH-HHHH--CHHHHCCEEEEEEEEESTTSHHHHHTTB--------------------SHHH
T ss_pred             EEEEEEecCCCcchHhhHHHH-HHHH--HHhhcceecceEEEEECCCCceEEeecc-------------eecC--CCcHH
Confidence            346899999999999999999 8888  58888999999  77766653 332211             1121  24557


Q ss_pred             HHHHHHHcC-CCcceEEEecCC----cccHHHHHHHHHh-CCCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeeecCCCC
Q 021156           98 FANLYKEDG-LTGGHAIMLGAD----PLSKAAAIEALHA-YPGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFNNGQM  170 (316)
Q Consensus        98 ~a~~~~~~G-~~~l~lvDLda~----~~~~~~i~~~v~~-~~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~~~~~~  170 (316)
                      +|..++.++ +.++.++||+++    .+.++.+++.++. .+.|++||||||+ |++++++++|||.||+||.++++   
T Consensus       141 iaa~~alA~~~~g~~~iYLEaGSGa~~~v~~~v~~~~~~~~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~iee~---  217 (230)
T PF01884_consen  141 IAAAAALAAEYLGMPIIYLEAGSGAYGPVPEEVIAAVKKLSDIPLIVGGGIRSPEQAREMAEAGADTIVVGNAIEED---  217 (230)
T ss_dssp             HHHHHHHHHHHTT-SEEEEE--TTSSS-HHHHHHHHHHHSSSSEEEEESS--SHHHHHHHHCTTSSEEEESCHHHHH---
T ss_pred             HHHHHHHHHHHhCCCEEEEEeCCCCCCCccHHHHHHHHhcCCccEEEeCCcCCHHHHHHHHHCCCCEEEECCEEEEc---
Confidence            888888766 999999999973    2345778887775 6899999999995 99999999999999999999997   


Q ss_pred             CHHHHHHHHHH
Q 021156          171 DLERLKDLVRV  181 (316)
Q Consensus       171 ~~eli~ei~~~  181 (316)
                       ++ ++++.+.
T Consensus       218 -~~-~e~~~~~  226 (230)
T PF01884_consen  218 -PD-LEEALET  226 (230)
T ss_dssp             -H--HHHHHTH
T ss_pred             -ch-HHHHHHH
Confidence             64 5555543

This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.

>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed

Probab=99.67  E-value=2.4e-16  Score=143.10  Aligned_cols=137  Identities=16%  Similarity=0.174  Sum_probs=106.7

Q ss_pred             CceeeecCCCCCCccccccccccCcccccccccEEEEE--EEeeCCe-EEEEEcccccCCCCCCCceeeecCCccCHHHH
Q 021156           22 SDLFWLHKNNNSSFYAPSSSLSRPSRLSVRCAVRFRPC--IDIHKGK-VKQIVGSTLQDSKDDGTKLVTNFESDKSAAEF   98 (316)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIP~--IDi~~G~-vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~   98 (316)
                      ..+|++++|||+|+||+|++ ++|.+  +++.+++||+  |-+..|. |-++..+           ...++    ++.++
T Consensus        81 l~~svlNs~~~~~iig~~~~-~~~~~--~~~~le~ip~gYiv~~~~~~va~~~~~-----------~~~~~----~~~~~  142 (232)
T PRK04169         81 LFPSVLNSRNPYWIIGAHVE-AAPII--KKGGLEVIPEGYIVLNPGSKVAVVGTA-----------APIPL----DKPDI  142 (232)
T ss_pred             EEEEEecCCCcchHhhHHHH-HHHHH--hhcCcEECceEEEEECCCCeeeeeecc-----------ccCCC----ChHHH
Confidence            46899999999999999999 89984  8899999998  6676665 4442221           11333    56679


Q ss_pred             HHHHHHcC-CCcceEEEecCC----cccHHHHHHHHH-hCCC-cEEEecCCCH-HHHHHHHHcCCCEEEeCCeeecCCCC
Q 021156           99 ANLYKEDG-LTGGHAIMLGAD----PLSKAAAIEALH-AYPG-GLQVGGGINS-DNSLSYIEEGATHVIVTSYVFNNGQM  170 (316)
Q Consensus        99 a~~~~~~G-~~~l~lvDLda~----~~~~~~i~~~v~-~~~~-pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~~~~~~  170 (316)
                      |..++.++ +.++.+++|+++    .+.+.++++.++ ..+. |+++|||||+ |++++++.+|||.||+||.+.+|   
T Consensus       143 ~~~~~lA~~~~g~~~vYle~gs~~g~~~~~e~I~~v~~~~~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~d---  219 (232)
T PRK04169        143 AAYAALAAEYLGMPIVYLEYGGGAGDPVPPEMVKAVKKALDITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEED---  219 (232)
T ss_pred             HHHHHHHHHHcCCCeEEEECCCCCCCCCCHHHHHHHHHhcCCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhhC---
Confidence            99888886 889999999954    234455656665 4777 9999999995 89999999999999999999998   


Q ss_pred             CHH-HHHHHHH
Q 021156          171 DLE-RLKDLVR  180 (316)
Q Consensus       171 ~~e-li~ei~~  180 (316)
                       ++ .++++.+
T Consensus       220 -~~~~~~~~~~  229 (232)
T PRK04169        220 -PKKTVKAIKK  229 (232)
T ss_pred             -HHHHHHHHHh
Confidence             66 5555543

>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]

Probab=99.64  E-value=1.8e-15  Score=144.11  Aligned_cols=131  Identities=19%  Similarity=0.309  Sum_probs=111.0

Q ss_pred             CCeeecCCCCCHHHHHHHHHHhcCceEE-EeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCcc
Q 021156          161 TSYVFNNGQMDLERLKDLVRVVGKQRLV-LDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEG  239 (316)
Q Consensus       161 gt~~~~~~~~~~eli~ei~~~~G~~~Iv-vslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG  239 (316)
                      |+++.++    |+++.+++++. .+.+- +.+.+|+|        -||.+.. ....++++.+++.|++.+.+|.+++..
T Consensus       113 Ga~Ll~~----p~lv~~iv~a~-~~av~~iPVTVKiR--------lG~d~~~-~~~~~ia~~~~~~g~~~ltVHgRtr~~  178 (323)
T COG0042         113 GAALLKN----PELLAEIVKAM-VEAVGDIPVTVKIR--------LGWDDDD-ILALEIARILEDAGADALTVHGRTRAQ  178 (323)
T ss_pred             chhhcCC----HHHHHHHHHHH-HHhhCCCCeEEEEe--------cccCccc-ccHHHHHHHHHhcCCCEEEEecccHHh
Confidence            8889997    99999999887 34442 55665533        4776543 457889999999999999999999999


Q ss_pred             ccCCC-CHHHHHHHhhcCC-CcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHHh
Q 021156          240 KKLGI-DDELVALLGKYSP-IPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       240 ~~~G~-d~eli~~l~~~~~-iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~~  309 (316)
                      .+.|+ ||+.++++++.++ +|||++|+|.|.+|..++++.+ |++||||||++  |++||.+.++ ++...
T Consensus       179 ~y~~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~t-g~DgVMigRga--~~nP~l~~~i-~~~~~  246 (323)
T COG0042         179 GYLGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYT-GADGVMIGRGA--LGNPWLFRQI-DYLET  246 (323)
T ss_pred             cCCCccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhh-CCCEEEEcHHH--ccCCcHHHHH-HHhhc
Confidence            99987 9999999999888 9999999999999999999987 69999999999  9999998887 44443

>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=99.63  E-value=3.5e-15  Score=138.06  Aligned_cols=117  Identities=21%  Similarity=0.245  Sum_probs=106.1

Q ss_pred             CceEEEeeeeeecCCeeEEEeCCcceec-ccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEE
Q 021156          184 KQRLVLDLSCRKKDGKYAIVTDRWQKFS-DVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTY  262 (316)
Q Consensus       184 ~~~IvvslD~k~~~g~~~v~~~gw~~~~-~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIa  262 (316)
                      ..+|++++|++  +|+ .|++.+|.+.+ ..++.++++.+.+.|+++++++|++++++.+|+|+++++++++.+++||++
T Consensus         3 ~~~iipaiD~~--~G~-~V~~~~~~~~~~~~dp~~~a~~~~~~g~~~l~i~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~   79 (258)
T PRK01033          3 RPRIIPCLLLK--DGG-LVKTVKFKDPRYIGDPINAVRIFNEKEVDELIVLDIDASKRGSEPNYELIENLASECFMPLCY   79 (258)
T ss_pred             CcEEEEEEEEE--CCc-EEEeecccCceeCCCHHHHHHHHHHcCCCEEEEEECCCCcCCCcccHHHHHHHHHhCCCCEEE
Confidence            36899999998  886 89999998755 568999999999999999999999999999999999999999989999999


Q ss_pred             EeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHH
Q 021156          263 AGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWH  307 (316)
Q Consensus       263 sGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~  307 (316)
                      +||+++++|+.++++.|  ++++++|+++  ++++-.++++.+..
T Consensus        80 gGGi~s~~d~~~l~~~G--~~~vvigs~~--~~~~~~~~~~~~~~  120 (258)
T PRK01033         80 GGGIKTLEQAKKIFSLG--VEKVSINTAA--LEDPDLITEAAERF  120 (258)
T ss_pred             CCCCCCHHHHHHHHHCC--CCEEEEChHH--hcCHHHHHHHHHHh
Confidence            99999999999999988  9999999999  99886666665544

>PRK10415 tRNA-dihydrouridine synthase B; Provisional

Probab=99.63  E-value=2.9e-15  Score=142.76  Aligned_cols=133  Identities=13%  Similarity=0.126  Sum_probs=110.4

Q ss_pred             CCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccc
Q 021156          161 TSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGK  240 (316)
Q Consensus       161 gt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~  240 (316)
                      |++..+|    |+++.++.+.+ .+.+-+.+.+|.       + .||... ..+..++++.+++.|++.+.+|.+++++.
T Consensus       111 Gs~ll~~----p~~~~eiv~av-~~a~d~pv~vKi-------R-~G~~~~-~~~~~~~a~~le~~G~d~i~vh~rt~~~~  176 (321)
T PRK10415        111 GSALLQY----PDLVKSILTEV-VNAVDVPVTLKI-------R-TGWAPE-HRNCVEIAQLAEDCGIQALTIHGRTRACL  176 (321)
T ss_pred             ccHHhcC----HHHHHHHHHHH-HHhcCCceEEEE-------E-ccccCC-cchHHHHHHHHHHhCCCEEEEecCccccc
Confidence            7888887    99999999887 333322333332       1 577642 33678999999999999999999999999


Q ss_pred             cCC-CCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHHhh
Q 021156          241 KLG-IDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQQ  310 (316)
Q Consensus       241 ~~G-~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~~~  310 (316)
                      +.| .||+.++++++.+++|||++|||.|.+|+.++++.+ |+++|++||++  +.+||.++++.+++...
T Consensus       177 ~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~-gadgVmiGR~~--l~nP~if~~~~~~~~~~  244 (321)
T PRK10415        177 FNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYT-GADALMIGRAA--QGRPWIFREIQHYLDTG  244 (321)
T ss_pred             cCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhcc-CCCEEEEChHh--hcCChHHHHHHHHHhCC
Confidence            988 599999999999999999999999999999999864 49999999999  99999999998776543

>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=99.62  E-value=4.5e-15  Score=135.80  Aligned_cols=115  Identities=17%  Similarity=0.248  Sum_probs=103.6

Q ss_pred             eEEEeeeeeecCCeeEEEeCCcceec-ccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEe
Q 021156          186 RLVLDLSCRKKDGKYAIVTDRWQKFS-DVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAG  264 (316)
Q Consensus       186 ~IvvslD~k~~~g~~~v~~~gw~~~~-~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasG  264 (316)
                      +|++++|++  +|+ .|...+|.+.. ..++.++++.+++.|++++++||++++|+..|+|+++++++++.+++||+++|
T Consensus         2 ~ii~~iD~~--~g~-~v~~~~~~~~~~~~d~~~~a~~~~~~G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~~~pv~~~G   78 (243)
T cd04731           2 RIIPCLDVK--DGR-VVKGVNFKNLRDAGDPVELAKRYNEQGADELVFLDITASSEGRETMLDVVERVAEEVFIPLTVGG   78 (243)
T ss_pred             eEEEEEEEE--CCe-EEEeEccccceeCCCHHHHHHHHHHCCCCEEEEEcCCcccccCcccHHHHHHHHHhCCCCEEEeC
Confidence            789999998  886 66878888754 45899999999999999999999999999999999999999998999999999


Q ss_pred             CCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHH
Q 021156          265 GVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWH  307 (316)
Q Consensus       265 GI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~  307 (316)
                      ||++.+|++++++.|  +++|++|+++  +.++..+.++.+.+
T Consensus        79 GI~s~~d~~~~l~~G--~~~v~ig~~~--~~~p~~~~~i~~~~  117 (243)
T cd04731          79 GIRSLEDARRLLRAG--ADKVSINSAA--VENPELIREIAKRF  117 (243)
T ss_pred             CCCCHHHHHHHHHcC--CceEEECchh--hhChHHHHHHHHHc
Confidence            999999999999987  9999999999  99887777766544

Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.

>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase

Probab=99.62  E-value=1.3e-15  Score=135.99  Aligned_cols=123  Identities=14%  Similarity=0.093  Sum_probs=92.7

Q ss_pred             CceeeecCCCCCCccccccccccCcccccccccEEEEE--EEeeCCe-EEEEEcccccCCCCCCCceeeecCCccCHH--
Q 021156           22 SDLFWLHKNNNSSFYAPSSSLSRPSRLSVRCAVRFRPC--IDIHKGK-VKQIVGSTLQDSKDDGTKLVTNFESDKSAA--   96 (316)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIP~--IDi~~G~-vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~--   96 (316)
                      .-+|++++|||+|++|+|+. ++|.  +++...++||+  |-+..|. |-++.+.             .+.+ +.+|.  
T Consensus        74 ~~~sllns~~~~~i~g~~~~-~~~~--~~~~~~e~ip~gYiv~~~~~~v~~v~~a-------------~~ip-~~~~e~~  136 (205)
T TIGR01769        74 FFMSLLNSADTYFIVGAQIL-GAIT--ILKLNLEVIPMAYLIVGPGGAVGYVGKA-------------REIP-YNKPEIA  136 (205)
T ss_pred             EEEEeecCCCcchhhhHHHH-HHHH--HHHcCCcccceEEEEECCCCceeeecCc-------------ccCC-CCCHHHH
Confidence            45899999999999999999 8988  58899999998  6677666 4443321             1121 12343  


Q ss_pred             -HHHHHHHHcCCCcceEEEecCCc-ccHHHHHHHHH-hCCCcEEEecCCCH-HHHHHHHHcCCCEEEeC
Q 021156           97 -EFANLYKEDGLTGGHAIMLGADP-LSKAAAIEALH-AYPGGLQVGGGINS-DNSLSYIEEGATHVIVT  161 (316)
Q Consensus        97 -e~a~~~~~~G~~~l~lvDLda~~-~~~~~i~~~v~-~~~~pl~vGGGIr~-e~~~~~l~~Gad~VVig  161 (316)
                       ++|..-+..|++++|+.|+++.. ..+..+++.++ .+++|+++|||||+ |++++++++|||.||+|
T Consensus       137 ~~~a~aa~~~G~~~i~Le~~sGa~~~v~~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG  205 (205)
T TIGR01769       137 AAYCLAAKYFGMKWVYLEAGSGASYPVNPETISLVKKASGIPLIVGGGIRSPEIAYEIVLAGADAIVTG  205 (205)
T ss_pred             HHHHHHHHHcCCCEEEEEcCCCCCCCCCHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence             23333334689999999999873 45566666665 56899999999995 99999999999999997

This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.

>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit

Probab=99.55  E-value=4.2e-14  Score=130.54  Aligned_cols=115  Identities=19%  Similarity=0.234  Sum_probs=101.7

Q ss_pred             CceEEEeeeeeecCCeeEEEeCCccee---cccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcE
Q 021156          184 KQRLVLDLSCRKKDGKYAIVTDRWQKF---SDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPV  260 (316)
Q Consensus       184 ~~~IvvslD~k~~~g~~~v~~~gw~~~---~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPV  260 (316)
                      ..+|++++|++  +|+  + +++|+..   ...++.++++.+.+.|++++.++|+++.++..+.|+++++++++.+++||
T Consensus         3 ~~~iip~iD~~--~G~--~-V~~~~~~~~~~~~dp~~~a~~~~~~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~~~~pv   77 (254)
T TIGR00735         3 AKRIIPCLDVR--DGR--V-VKGVQFLNLRDAGDPVELAQRYDEEGADELVFLDITASSEGRTTMIDVVERTAETVFIPL   77 (254)
T ss_pred             CCeEEEEEEeE--CCE--E-EEeEeecCceECCCHHHHHHHHHHcCCCEEEEEcCCcccccChhhHHHHHHHHHhcCCCE
Confidence            36899999998  884  5 6777632   23589999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHH
Q 021156          261 TYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWH  307 (316)
Q Consensus       261 IasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~  307 (316)
                      +++|||+|.+|+++++..|  +++|++|+++  ++++.-++++.+..
T Consensus        78 ~~~GGi~s~~d~~~~~~~G--a~~vivgt~~--~~~p~~~~~~~~~~  120 (254)
T TIGR00735        78 TVGGGIKSIEDVDKLLRAG--ADKVSINTAA--VKNPELIYELADRF  120 (254)
T ss_pred             EEECCCCCHHHHHHHHHcC--CCEEEEChhH--hhChHHHHHHHHHc
Confidence            9999999999999999998  9999999999  99887777776544

>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ

Probab=99.55  E-value=8e-14  Score=126.69  Aligned_cols=112  Identities=21%  Similarity=0.220  Sum_probs=99.1

Q ss_pred             CceEEEeeeeeecCCeeEEE---eCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcE
Q 021156          184 KQRLVLDLSCRKKDGKYAIV---TDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPV  260 (316)
Q Consensus       184 ~~~IvvslD~k~~~g~~~v~---~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPV  260 (316)
                      .++|++++|++  +|+ .|.   ..+|+.  ..++.+.++.+.+.|+++++++|++++|+..|+|++.++++++.+++||
T Consensus         3 ~~~ii~~iD~~--~g~-~V~~~~~~~~~~--~~dp~~~a~~~~~~g~~~i~i~dl~~~~~~~~~n~~~~~~i~~~~~~pv   77 (232)
T TIGR03572         3 KKRIIPCLLLK--DGR-LVKTVQFKDPRY--IGDPVNAARIYNAKGADELIVLDIDASKRGREPLFELISNLAEECFMPL   77 (232)
T ss_pred             CceEEEEEEEE--CCe-EEEeeccCCCeE--CCCHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCHHHHHHHHHhCCCCE
Confidence            36899999998  885 665   678874  3389999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHH
Q 021156          261 TYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVV  304 (316)
Q Consensus       261 IasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~  304 (316)
                      +++||+++.+|+.++++.|  +++|++|+++  ++++-.++++.
T Consensus        78 ~~~ggi~~~~d~~~~~~~G--~~~vilg~~~--l~~~~~~~~~~  117 (232)
T TIGR03572        78 TVGGGIRSLEDAKKLLSLG--ADKVSINTAA--LENPDLIEEAA  117 (232)
T ss_pred             EEECCCCCHHHHHHHHHcC--CCEEEEChhH--hcCHHHHHHHH
Confidence            9999999999999999988  9999999999  98764444444

This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr

>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=99.54  E-value=6.9e-14  Score=127.22  Aligned_cols=101  Identities=22%  Similarity=0.278  Sum_probs=88.7

Q ss_pred             eEEEeeeeeecCCeeEE-EeCCcceecc--cCHHHHHHHHHHcCCCEEEEeecCCccccCC--CCHHHHHHHhhcCCCcE
Q 021156          186 RLVLDLSCRKKDGKYAI-VTDRWQKFSD--VYLDERVLDFLASYADEFLVHGVDVEGKKLG--IDDELVALLGKYSPIPV  260 (316)
Q Consensus       186 ~IvvslD~k~~~g~~~v-~~~gw~~~~~--~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G--~d~eli~~l~~~~~iPV  260 (316)
                      +|++++|++  +|+ .| .++||.+.+.  .++.+.++.+.+. ++++++  +|.||+.+|  +|+++++++.+.+++|+
T Consensus         3 rIip~iD~~--~G~-vVr~~~G~~~~~~~~~dp~~~a~~~~~~-~~~l~i--vDldga~~g~~~n~~~i~~i~~~~~~pv   76 (228)
T PRK04128          3 RIYPAIDLM--NGK-AVRLYKGRKEEVKVYGDPVEIALRFSEY-VDKIHV--VDLDGAFEGKPKNLDVVKNIIRETGLKV   76 (228)
T ss_pred             EEEEEEEeE--CCE-EEEEEeccccCceECCCHHHHHHHHHHh-CCEEEE--EECcchhcCCcchHHHHHHHHhhCCCCE
Confidence            689999998  884 44 5799987544  3899999999998 999877  778898877  69999999999899999


Q ss_pred             EEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCc
Q 021156          261 TYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGN  297 (316)
Q Consensus       261 IasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~  297 (316)
                      +++|||+|.+|++++++.|  +++|++|++.  | ++
T Consensus        77 ~~gGGIrs~edv~~l~~~G--~~~vivGtaa--~-~~  108 (228)
T PRK04128         77 QVGGGLRTYESIKDAYEIG--VENVIIGTKA--F-DL  108 (228)
T ss_pred             EEcCCCCCHHHHHHHHHCC--CCEEEECchh--c-CH
Confidence            9999999999999999998  9999999999  8 53

>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family

Probab=99.51  E-value=3.1e-13  Score=128.70  Aligned_cols=164  Identities=15%  Similarity=0.171  Sum_probs=125.5

Q ss_pred             CcEEEecCCC--H-HHHHHHHHcCCCEEEeCCeeecC-------CC---CCHHHHHHHHHHhcCceEEEeeeeeecCCee
Q 021156          134 GGLQVGGGIN--S-DNSLSYIEEGATHVIVTSYVFNN-------GQ---MDLERLKDLVRVVGKQRLVLDLSCRKKDGKY  200 (316)
Q Consensus       134 ~pl~vGGGIr--~-e~~~~~l~~Gad~VVigt~~~~~-------~~---~~~eli~ei~~~~G~~~IvvslD~k~~~g~~  200 (316)
                      +-+|++|.--  . +.++.+.++|+|-|=++...-.+       |.   -+|+++.++.+.. ++.+-+.+.+|.+    
T Consensus        65 ~i~ql~g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~v-r~~~~~pv~vKir----  139 (319)
T TIGR00737        65 ISVQLFGSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAV-VDAVDIPVTVKIR----  139 (319)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHH-HhhcCCCEEEEEE----
Confidence            3468888774  3 44777778899988774332111       11   1588888888887 4554455666522    


Q ss_pred             EEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCC-CHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhC
Q 021156          201 AIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGI-DDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAG  279 (316)
Q Consensus       201 ~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~-d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G  279 (316)
                          .||.+ ...+..++++.+++.|++.+.+|.++..+.+.|+ +|+.++++++.+++|||++|||.+.+|+.++++.+
T Consensus       140 ----~g~~~-~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~  214 (319)
T TIGR00737       140 ----IGWDD-AHINAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETT  214 (319)
T ss_pred             ----cccCC-CcchHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhh
Confidence                25643 2335779999999999999999998887777665 99999999999999999999999999999999655


Q ss_pred             CCcCEEEEccchhhccCcccHHHHHHHHHhh
Q 021156          280 IGRVDVTVGSALDIFGGNLAYKDVVAWHAQQ  310 (316)
Q Consensus       280 ~g~~gVivG~Al~~~~g~~~~~~~~~~~~~~  310 (316)
                       |+++|++||++  +.+|+.++++.+++..+
T Consensus       215 -gad~VmigR~~--l~~P~l~~~~~~~~~~~  242 (319)
T TIGR00737       215 -GCDGVMIGRGA--LGNPWLFRQIEQYLTTG  242 (319)
T ss_pred             -CCCEEEEChhh--hhCChHHHHHHHHHhCC
Confidence             59999999999  99999999887766543

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated

Probab=99.51  E-value=2.2e-13  Score=123.62  Aligned_cols=113  Identities=19%  Similarity=0.209  Sum_probs=97.0

Q ss_pred             eEEEeeeeeecCCeeEEE-eCCcceec---ccCHHHHHHHHHHcCCCEEEEeecCCccccC--CCCHHHHHHHhhcCCCc
Q 021156          186 RLVLDLSCRKKDGKYAIV-TDRWQKFS---DVYLDERVLDFLASYADEFLVHGVDVEGKKL--GIDDELVALLGKYSPIP  259 (316)
Q Consensus       186 ~IvvslD~k~~~g~~~v~-~~gw~~~~---~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~--G~d~eli~~l~~~~~iP  259 (316)
                      +|++++|++  +|+ .|+ ++||.+..   ..++.+.++.+.+.|++++.++|+  ||+.+  ++|+++++++++.+++|
T Consensus         2 ~iip~iD~~--~g~-~v~~~~G~~~~~~~~~~~~~~~a~~~~~~g~~~i~v~dl--d~~~~g~~~~~~~i~~i~~~~~~p   76 (233)
T PRK00748          2 IIIPAIDLK--DGK-CVRLYQGDYDQATVYSDDPVAQAKAWEDQGAKWLHLVDL--DGAKAGKPVNLELIEAIVKAVDIP   76 (233)
T ss_pred             eEEEEEEEE--CCe-EEEccccccccceEecCCHHHHHHHHHHcCCCEEEEEeC--CccccCCcccHHHHHHHHHHCCCC
Confidence            589999998  884 444 78998754   558999999999999999999998  46544  48999999999989999


Q ss_pred             EEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHH
Q 021156          260 VTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWH  307 (316)
Q Consensus       260 VIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~  307 (316)
                      |+++|||++.+|++++++.|  +++|++|+++  ++++-.++++.+..
T Consensus        77 v~~~GGI~~~ed~~~~~~~G--a~~vilg~~~--l~~~~~l~ei~~~~  120 (233)
T PRK00748         77 VQVGGGIRSLETVEALLDAG--VSRVIIGTAA--VKNPELVKEACKKF  120 (233)
T ss_pred             EEEcCCcCCHHHHHHHHHcC--CCEEEECchH--HhCHHHHHHHHHHh
Confidence            99999999999999999998  9999999999  99876666665543

>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=99.50  E-value=2.1e-13  Score=125.64  Aligned_cols=117  Identities=17%  Similarity=0.215  Sum_probs=100.2

Q ss_pred             CceEEEeeeeeecCCeeEEEeCCcce-ecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEE
Q 021156          184 KQRLVLDLSCRKKDGKYAIVTDRWQK-FSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTY  262 (316)
Q Consensus       184 ~~~IvvslD~k~~~g~~~v~~~gw~~-~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIa  262 (316)
                      ..+|++++|++  +|+ .|+.....+ ....++.++++.+.+.|++++.+||++++++..++|+++++++++.+++||++
T Consensus         3 ~~~iip~idl~--~g~-~V~~~~~~~~~~~~d~~~~a~~~~~~G~~~i~i~dl~~~~~~~~~~~~~i~~i~~~~~ipv~~   79 (253)
T PRK02083          3 AKRIIPCLDVK--DGR-VVKGVNFVNLRDAGDPVELAKRYNEEGADELVFLDITASSEGRDTMLDVVERVAEQVFIPLTV   79 (253)
T ss_pred             CCeEEEEEEEE--CCE-EEEeEEecceeecCCHHHHHHHHHHcCCCEEEEEeCCcccccCcchHHHHHHHHHhCCCCEEe
Confidence            36899999998  885 554333221 22348999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHH
Q 021156          263 AGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWH  307 (316)
Q Consensus       263 sGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~  307 (316)
                      +||+++.+|++++++.|  +++|++|+++  +.++..++++.+..
T Consensus        80 ~GGi~s~~~~~~~l~~G--a~~Viigt~~--l~~p~~~~ei~~~~  120 (253)
T PRK02083         80 GGGIRSVEDARRLLRAG--ADKVSINSAA--VANPELISEAADRF  120 (253)
T ss_pred             eCCCCCHHHHHHHHHcC--CCEEEEChhH--hhCcHHHHHHHHHc
Confidence            99999999999999987  9999999999  99887777776554

>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional

Probab=99.50  E-value=1.7e-12  Score=117.17  Aligned_cols=196  Identities=17%  Similarity=0.043  Sum_probs=127.3

Q ss_pred             EeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHH-hCCCcEE--
Q 021156           61 DIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALH-AYPGGLQ--  137 (316)
Q Consensus        61 Di~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~-~~~~pl~--  137 (316)
                      ++++|-+|.+. .      |    +-+++.+..++.++|+.+.+.|+..+.+-       . ...++.++ .+++|+.  
T Consensus         2 ~~~~~~~~~~~-~------~----~~~~~~~~~~~~~~a~a~~~~G~~~~~~~-------~-~~~i~~i~~~~~~Pil~~   62 (221)
T PRK01130          2 QLKGGLIVSCQ-A------L----PGEPLHSPEIMAAMALAAVQGGAVGIRAN-------G-VEDIKAIRAVVDVPIIGI   62 (221)
T ss_pred             CcCCCEEEEec-C------C----CCCCCCCHHHHHHHHHHHHHCCCeEEEcC-------C-HHHHHHHHHhCCCCEEEE
Confidence            56788877753 1      1    11444434578899999999998776651       1 33444444 4667764  


Q ss_pred             -E-e-cC--C----CHHHHHHHHHcCCCEEEeCCeeecCC--CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCC
Q 021156          138 -V-G-GG--I----NSDNSLSYIEEGATHVIVTSYVFNNG--QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDR  206 (316)
Q Consensus       138 -v-G-GG--I----r~e~~~~~l~~Gad~VVigt~~~~~~--~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~g  206 (316)
                       . . .+  +    ..++++.+.++|||.|+++.....++  +...++++++.+..   .+.+..++             
T Consensus        63 ~~~d~~~~~~~~~~~~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~~---~i~vi~~v-------------  126 (221)
T PRK01130         63 IKRDYPDSEVYITPTLKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEYP---GQLLMADC-------------  126 (221)
T ss_pred             EecCCCCCCceECCCHHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC---CCeEEEeC-------------
Confidence             1 0 01  1    23679999999999988877654320  11133444443211   12222222             


Q ss_pred             cceecccCHHHHHHHHHHcCCCEEEEeecCCcc---ccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcC
Q 021156          207 WQKFSDVYLDERVLDFLASYADEFLVHGVDVEG---KKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRV  283 (316)
Q Consensus       207 w~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG---~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~  283 (316)
                             ...+.++.+.+.|++.+.++.....+   ...+.++++++++++.+++||+++|||++.+|+.++++.|  ++
T Consensus       127 -------~t~ee~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia~GGI~t~~~~~~~l~~G--ad  197 (221)
T PRK01130        127 -------STLEEGLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVGCPVIAEGRINTPEQAKKALELG--AH  197 (221)
T ss_pred             -------CCHHHHHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHCC--CC
Confidence                   12356788999999987654322222   2355689999999988899999999999999999999998  99


Q ss_pred             EEEEccchhhccCcccHHH
Q 021156          284 DVTVGSALDIFGGNLAYKD  302 (316)
Q Consensus       284 gVivG~Al~~~~g~~~~~~  302 (316)
                      +|++|+++  ..-....++
T Consensus       198 gV~iGsai--~~~~~~~~~  214 (221)
T PRK01130        198 AVVVGGAI--TRPEEITKW  214 (221)
T ss_pred             EEEEchHh--cCCHHHHHH
Confidence            99999999  754333333

>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain

Probab=99.48  E-value=4.9e-13  Score=120.88  Aligned_cols=155  Identities=19%  Similarity=0.229  Sum_probs=118.4

Q ss_pred             CCcEEEecCC-C-H-HHHHHHHHcCCCEEEeCCe--------------eecCCCCCHHHHHHHHHHhcCceEEEeeeeee
Q 021156          133 PGGLQVGGGI-N-S-DNSLSYIEEGATHVIVTSY--------------VFNNGQMDLERLKDLVRVVGKQRLVLDLSCRK  195 (316)
Q Consensus       133 ~~pl~vGGGI-r-~-e~~~~~l~~Gad~VVigt~--------------~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~  195 (316)
                      ++.+|++|+- . . +.++.+.++|+|.|-|+..              ..++    ++++.++.+++. +.+-+.+.+|.
T Consensus        56 p~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~----~~~~~eii~~v~-~~~~~~v~vk~  130 (231)
T cd02801          56 PLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKD----PELVAEIVRAVR-EAVPIPVTVKI  130 (231)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCC----HHHHHHHHHHHH-HhcCCCEEEEE
Confidence            4556788875 3 3 5577777889999987532              2334    888888888773 43333444432


Q ss_pred             cCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCcc-ccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHH
Q 021156          196 KDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEG-KKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEK  274 (316)
Q Consensus       196 ~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG-~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~  274 (316)
                      +        .+|...  .+..++++.+.+.|++.+.+|.++.++ ...+.+++.++++++.+++||+++|||.+.+|+.+
T Consensus       131 r--------~~~~~~--~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~  200 (231)
T cd02801         131 R--------LGWDDE--EETLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALR  200 (231)
T ss_pred             e--------eccCCc--hHHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHH
Confidence            1        245432  257789999999999999999988775 33456999999999999999999999999999999


Q ss_pred             HHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156          275 IKVAGIGRVDVTVGSALDIFGGNLAYKDVVA  305 (316)
Q Consensus       275 l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~  305 (316)
                      +++.+ ++++|++|+++  +.+|+.++++.+
T Consensus       201 ~l~~~-gad~V~igr~~--l~~P~~~~~~~~  228 (231)
T cd02801         201 CLEQT-GVDGVMIGRGA--LGNPWLFREIKE  228 (231)
T ss_pred             HHHhc-CCCEEEEcHHh--HhCCHHHHhhhh
Confidence            99985 49999999999  999988877654

Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.

>PRK10550 tRNA-dihydrouridine synthase C; Provisional

Probab=99.46  E-value=7.4e-13  Score=125.72  Aligned_cols=158  Identities=16%  Similarity=0.113  Sum_probs=119.7

Q ss_pred             CCcEEEecCCC--H-HHHHHHHHcCCCEEEeCCeeec-----CC-----CCCHHHHHHHHHHhcCceE--EEeeeeeecC
Q 021156          133 PGGLQVGGGIN--S-DNSLSYIEEGATHVIVTSYVFN-----NG-----QMDLERLKDLVRVVGKQRL--VLDLSCRKKD  197 (316)
Q Consensus       133 ~~pl~vGGGIr--~-e~~~~~l~~Gad~VVigt~~~~-----~~-----~~~~eli~ei~~~~G~~~I--vvslD~k~~~  197 (316)
                      ++-+|+.|.--  . +.++.+.+.|+|.|=|+.....     .|     .-+|+++.++.+.. .+.+  -+.+.+|.+ 
T Consensus        64 p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~av-r~~~~~~~pVsvKiR-  141 (312)
T PRK10550         64 LVRIQLLGQYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAM-REAVPAHLPVTVKVR-  141 (312)
T ss_pred             cEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHH-HHhcCCCcceEEEEE-
Confidence            34578887763  3 4577777889888776533311     11     01488888887766 2322  134555421 


Q ss_pred             CeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCC--CHHHHHHHhhcCCCcEEEEeCCCCHHHHHHH
Q 021156          198 GKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGI--DDELVALLGKYSPIPVTYAGGVTTMADLEKI  275 (316)
Q Consensus       198 g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~--d~eli~~l~~~~~iPVIasGGI~s~eDi~~l  275 (316)
                             .||.+..  ...++++.+++.|++.+.+|.+++.+.++|+  ||+.++++++.+++|||++|||.|.+|+.++
T Consensus       142 -------~g~~~~~--~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~  212 (312)
T PRK10550        142 -------LGWDSGE--RKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQC  212 (312)
T ss_pred             -------CCCCCch--HHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHH
Confidence                   2675322  3679999999999999999999988888886  9999999999999999999999999999999


Q ss_pred             HHhCCCcCEEEEccchhhccCcccHHHHH
Q 021156          276 KVAGIGRVDVTVGSALDIFGGNLAYKDVV  304 (316)
Q Consensus       276 ~~~G~g~~gVivG~Al~~~~g~~~~~~~~  304 (316)
                      ++.+ |+++|||||++  +.+||.|+++.
T Consensus       213 l~~~-g~DgVmiGRg~--l~nP~lf~~~~  238 (312)
T PRK10550        213 MAIT-GCDAVMIGRGA--LNIPNLSRVVK  238 (312)
T ss_pred             Hhcc-CCCEEEEcHHh--HhCcHHHHHhh
Confidence            9876 69999999999  99999998764

>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]

Probab=99.45  E-value=6.1e-13  Score=118.69  Aligned_cols=119  Identities=18%  Similarity=0.242  Sum_probs=101.1

Q ss_pred             CceEEEeeeeeecCCeeEEEeCCcceecc-cCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEE
Q 021156          184 KQRLVLDLSCRKKDGKYAIVTDRWQKFSD-VYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTY  262 (316)
Q Consensus       184 ~~~IvvslD~k~~~g~~~v~~~gw~~~~~-~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIa  262 (316)
                      ..||+++||++  +|+ .|+...+.+... =++.++++.+.+.|++|+++.||+..-..+.++++.+++.++.+.||+.+
T Consensus         3 ~kRIIPCLDVk--~Gr-VVKGv~F~~lrd~GDpVelA~~Y~e~GADElvFlDItAs~~gr~~~~~vv~r~A~~vfiPltV   79 (256)
T COG0107           3 AKRIIPCLDVK--DGR-VVKGVNFKNLRDAGDPVELAKRYNEEGADELVFLDITASSEGRETMLDVVERVAEQVFIPLTV   79 (256)
T ss_pred             cceeEeeEEcc--CCE-EEecccccchhhcCChHHHHHHHHHcCCCeEEEEecccccccchhHHHHHHHHHhhceeeeEe
Confidence            36899999998  885 565555654211 17999999999999999999999988777889999999999999999999


Q ss_pred             EeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHHh
Q 021156          263 AGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       263 sGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~~  309 (316)
                      +|||++.+|+.+++..|  ++.|.|+++.  ..+|-.+.++.+.+-.
T Consensus        80 GGGI~s~eD~~~ll~aG--ADKVSINsaA--v~~p~lI~~~a~~FGs  122 (256)
T COG0107          80 GGGIRSVEDARKLLRAG--ADKVSINSAA--VKDPELITEAADRFGS  122 (256)
T ss_pred             cCCcCCHHHHHHHHHcC--CCeeeeChhH--hcChHHHHHHHHHhCC
Confidence            99999999999999999  8999999999  8888666666554433

>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA

Probab=99.44  E-value=8e-14  Score=132.21  Aligned_cols=125  Identities=20%  Similarity=0.296  Sum_probs=91.9

Q ss_pred             CCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccc
Q 021156          161 TSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGK  240 (316)
Q Consensus       161 gt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~  240 (316)
                      |++..++    |+.+.++++.. .+.+-+.+.+|.+        -||.+ +..+..++++.+++.|++.+.+|.+++...
T Consensus       100 Ga~Ll~~----p~~~~~iv~~~-~~~~~~pvsvKiR--------~g~~~-~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~  165 (309)
T PF01207_consen  100 GAALLKD----PDLLAEIVKAV-RKAVPIPVSVKIR--------LGWDD-SPEETIEFARILEDAGVSAITVHGRTRKQR  165 (309)
T ss_dssp             GGGGGC-----HHHHHHHHHHH-HHH-SSEEEEEEE--------SECT---CHHHHHHHHHHHHTT--EEEEECS-TTCC
T ss_pred             ChhhhcC----hHHhhHHHHhh-hcccccceEEecc--------ccccc-chhHHHHHHHHhhhcccceEEEecCchhhc
Confidence            5666666    88888888776 2333344444432        34542 223578999999999999999999999999


Q ss_pred             cCCC-CHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHH
Q 021156          241 KLGI-DDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKD  302 (316)
Q Consensus       241 ~~G~-d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~  302 (316)
                      ++|+ ||+.++++++.+++|||++|||.|.+|+.++++.. |++||||||++  +.+||.|.+
T Consensus       166 ~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~t-g~dgvMigRga--l~nP~lf~~  225 (309)
T PF01207_consen  166 YKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQT-GADGVMIGRGA--LGNPWLFRE  225 (309)
T ss_dssp             CTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH--SSEEEESHHH--CC-CCHHCH
T ss_pred             CCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhc-CCcEEEEchhh--hhcCHHhhh
Confidence            9887 99999999999999999999999999999999884 59999999999  999999986

Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.

>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]

Probab=99.44  E-value=7.1e-13  Score=118.62  Aligned_cols=140  Identities=16%  Similarity=0.176  Sum_probs=108.7

Q ss_pred             CCceeeecCCCCCCccccccccccCcccccccccEEEEE--EEe-eCCeEEEEEcccccCCCCCCCceeeecCCccCHHH
Q 021156           21 VSDLFWLHKNNNSSFYAPSSSLSRPSRLSVRCAVRFRPC--IDI-HKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAE   97 (316)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIP~--IDi-~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e   97 (316)
                      ...+|++..+||.|.+|.|+. .+|.  +.+..+++||.  |=+ .+++|-++.+-           ..+++   ++| +
T Consensus        90 vff~svLNS~n~~~i~gaq~~-~a~~--~~~~~~e~i~~gYiV~~p~~~va~v~~A-----------~~ip~---~~~-~  151 (240)
T COG1646          90 VFFPSVLNSDNPYWIVGAQVE-GAKL--VGKLGLEVIPEGYIVVNPDGTVAWVGKA-----------KPIPL---DKE-D  151 (240)
T ss_pred             EEEEEEecCCCcccccchhhh-hhHH--HHhhhheecceEEEEECCCCceeeeccc-----------ccCCC---CcH-H
Confidence            345799999999999999999 8888  58888999998  333 45566664321           11444   244 5


Q ss_pred             HHHHHHHcC-CCcceEEEecCC----cccHHHHHHHHHhCCCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeeecCCCCC
Q 021156           98 FANLYKEDG-LTGGHAIMLGAD----PLSKAAAIEALHAYPGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFNNGQMD  171 (316)
Q Consensus        98 ~a~~~~~~G-~~~l~lvDLda~----~~~~~~i~~~v~~~~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~~~~~~~  171 (316)
                      +|..|+.++ +.++.++||+++    .+...++.+.+... .|++||||||+ |+++++.++|||.||+|+..+++    
T Consensus       152 iaa~y~la~~~~g~~~~YlEagsga~~Pv~~e~v~~v~~~-~~LivGGGIrs~E~A~~~a~agAD~IVtG~iiee~----  226 (240)
T COG1646         152 IAAYYALAEKYLGMPVVYLEAGSGAGDPVPVEMVSRVLSD-TPLIVGGGIRSPEQAREMAEAGADTIVTGTIIEED----  226 (240)
T ss_pred             HHHHHHHHHHHhCCeEEEEEecCCCCCCcCHHHHHHhhcc-ceEEEcCCcCCHHHHHHHHHcCCCEEEECceeecC----
Confidence            888887766 999999999965    35566666655533 39999999995 99999999999999999999998    


Q ss_pred             HHHHHHHHHHhc
Q 021156          172 LERLKDLVRVVG  183 (316)
Q Consensus       172 ~eli~ei~~~~G  183 (316)
                      ++.+.++.+.+.
T Consensus       227 ~~~~~~~v~~~k  238 (240)
T COG1646         227 PDKALETVEAIK  238 (240)
T ss_pred             HHHHHHHHHHhh
Confidence            888888887763

>PRK11815 tRNA-dihydrouridine synthase A; Provisional

Probab=99.42  E-value=1.5e-12  Score=124.66  Aligned_cols=130  Identities=18%  Similarity=0.215  Sum_probs=102.5

Q ss_pred             CCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcce-ecccCHHHHHHHHHHcCCCEEEEeecCC--
Q 021156          161 TSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQK-FSDVYLDERVLDFLASYADEFLVHGVDV--  237 (316)
Q Consensus       161 gt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~-~~~~~~~e~a~~~~~~Ga~~ilvtdi~~--  237 (316)
                      |+...++    |+++.++.+.+ ++.+.+.+++|.+     +   +|.. .+..++.++++.+++.|++.+.+|.++.  
T Consensus       111 Gs~L~~~----p~~~~eiv~av-r~~v~~pVsvKiR-----~---g~~~~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~  177 (333)
T PRK11815        111 GACLMAE----PELVADCVKAM-KDAVSIPVTVKHR-----I---GIDDQDSYEFLCDFVDTVAEAGCDTFIVHARKAWL  177 (333)
T ss_pred             eeHHhcC----HHHHHHHHHHH-HHHcCCceEEEEE-----e---eeCCCcCHHHHHHHHHHHHHhCCCEEEEcCCchhh
Confidence            6777787    99999999998 4666678888732     2   3322 1223567899999999999999997653  


Q ss_pred             cccc-------CCCCHHHHHHHhhcC-CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHH
Q 021156          238 EGKK-------LGIDDELVALLGKYS-PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHA  308 (316)
Q Consensus       238 dG~~-------~G~d~eli~~l~~~~-~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~  308 (316)
                      .|..       ...+|+.++++++.+ ++|||++|||.|++|+.++++ +  +++|||||++  +.+||.++++.++..
T Consensus       178 ~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~-~--aDgVmIGRa~--l~nP~~~~~~~~~~~  251 (333)
T PRK11815        178 KGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQ-H--VDGVMIGRAA--YHNPYLLAEVDRELF  251 (333)
T ss_pred             cCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-c--CCEEEEcHHH--HhCCHHHHHHHHHhc
Confidence            2211       123799999998874 899999999999999999997 5  9999999999  999999999876554

>TIGR00742 yjbN tRNA dihydrouridine synthase A

Probab=99.39  E-value=4.8e-12  Score=120.48  Aligned_cols=158  Identities=15%  Similarity=0.150  Sum_probs=116.6

Q ss_pred             CCcEEEecCCC--H-HHHHHHHHcCCCEEEeC--------------CeeecCCCCCHHHHHHHHHHhcCceEEEeeeeee
Q 021156          133 PGGLQVGGGIN--S-DNSLSYIEEGATHVIVT--------------SYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRK  195 (316)
Q Consensus       133 ~~pl~vGGGIr--~-e~~~~~l~~Gad~VVig--------------t~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~  195 (316)
                      ++-+|++|+--  . +-++.+-+.|+|.|=|+              +...+    +|+++.++++.. .+.+-+.+.+|.
T Consensus        56 p~~vQl~g~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~----~p~~~~~iv~av-~~~~~~PVsvKi  130 (318)
T TIGR00742        56 PVALQLGGSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMG----NADLVADCVKAM-QEAVNIPVTVKH  130 (318)
T ss_pred             cEEEEEccCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhc----CHHHHHHHHHHH-HHHhCCCeEEEE
Confidence            34578888773  3 44555556788776553              34444    489999998887 344334455542


Q ss_pred             cCCeeEEEeCCccee-cccCHHHHHHHHHHcCCCEEEEeecCC-ccccCC-------C-CHHHHHHHhhcC-CCcEEEEe
Q 021156          196 KDGKYAIVTDRWQKF-SDVYLDERVLDFLASYADEFLVHGVDV-EGKKLG-------I-DDELVALLGKYS-PIPVTYAG  264 (316)
Q Consensus       196 ~~g~~~v~~~gw~~~-~~~~~~e~a~~~~~~Ga~~ilvtdi~~-dG~~~G-------~-d~eli~~l~~~~-~iPVIasG  264 (316)
                      +        -||... +..+..++++.+++.|++.+.+|.+++ .+.++|       + ||+.++++++.+ ++|||++|
T Consensus       131 R--------~g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NG  202 (318)
T TIGR00742       131 R--------IGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEING  202 (318)
T ss_pred             e--------cCCCCcchHHHHHHHHHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEEC
Confidence            2        256432 112467889999999999999999986 222333       2 899999998876 89999999


Q ss_pred             CCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHH
Q 021156          265 GVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHA  308 (316)
Q Consensus       265 GI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~  308 (316)
                      ||.|.+|+.+.+. |  +++|||||++  +.+||.|.++.+++.
T Consensus       203 dI~s~~da~~~l~-g--~dgVMigRga--l~nP~if~~~~~~l~  241 (318)
T TIGR00742       203 GIKNSEQIKQHLS-H--VDGVMVGREA--YENPYLLANVDREIF  241 (318)
T ss_pred             CcCCHHHHHHHHh-C--CCEEEECHHH--HhCCHHHHHHHHHhc
Confidence            9999999999996 6  9999999999  999999999977654

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene []

Probab=99.36  E-value=2.7e-12  Score=112.10  Aligned_cols=169  Identities=19%  Similarity=0.124  Sum_probs=110.3

Q ss_pred             HHHHHHHcCCCcceEEEecCCcccHHHHHHHHH-hCCCcEEE-------ecCC--C--HHHHHHHHHcCCCEEEeCCeee
Q 021156           98 FANLYKEDGLTGGHAIMLGADPLSKAAAIEALH-AYPGGLQV-------GGGI--N--SDNSLSYIEEGATHVIVTSYVF  165 (316)
Q Consensus        98 ~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~-~~~~pl~v-------GGGI--r--~e~~~~~l~~Gad~VVigt~~~  165 (316)
                      +|+.-..-|+.++.        .+..+-++.++ .+++|++-       +.++  .  .++++.+.++||+.|.++.+.+
T Consensus         4 mA~Aa~~gGA~giR--------~~~~~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlDaT~R   75 (192)
T PF04131_consen    4 MAKAAEEGGAVGIR--------ANGVEDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGADIIALDATDR   75 (192)
T ss_dssp             HHHHHHHCT-SEEE--------EESHHHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE-SSS
T ss_pred             HHHHHHHCCceEEE--------cCCHHHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEecCCC
Confidence            55555555655332        23344445555 57788752       2344  3  3899999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEe--ecCCccccCC
Q 021156          166 NNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVH--GVDVEGKKLG  243 (316)
Q Consensus       166 ~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvt--di~~dG~~~G  243 (316)
                      .+++...+++.++.++|    ..+.-|+.                    .+|.+....++|++.+--|  .-+.+....+
T Consensus        76 ~Rp~~l~~li~~i~~~~----~l~MADis--------------------t~ee~~~A~~~G~D~I~TTLsGYT~~t~~~~  131 (192)
T PF04131_consen   76 PRPETLEELIREIKEKY----QLVMADIS--------------------TLEEAINAAELGFDIIGTTLSGYTPYTKGDG  131 (192)
T ss_dssp             S-SS-HHHHHHHHHHCT----SEEEEE-S--------------------SHHHHHHHHHTT-SEEE-TTTTSSTTSTTSS
T ss_pred             CCCcCHHHHHHHHHHhC----cEEeeecC--------------------CHHHHHHHHHcCCCEEEcccccCCCCCCCCC
Confidence            88644457777777766    35666763                    3578899999999977421  1122222288


Q ss_pred             CCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHH
Q 021156          244 IDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWH  307 (316)
Q Consensus       244 ~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~  307 (316)
                      ||+++++++.+. ++|||+.|++++++++.++++.|  +++|+||+|+   ++|   +.+.+|+
T Consensus       132 pD~~lv~~l~~~-~~pvIaEGri~tpe~a~~al~~G--A~aVVVGsAI---TrP---~~It~~F  186 (192)
T PF04131_consen  132 PDFELVRELVQA-DVPVIAEGRIHTPEQAAKALELG--AHAVVVGSAI---TRP---QEITKRF  186 (192)
T ss_dssp             HHHHHHHHHHHT-TSEEEEESS--SHHHHHHHHHTT---SEEEE-HHH---H-H---HHHHHHH
T ss_pred             CCHHHHHHHHhC-CCcEeecCCCCCHHHHHHHHhcC--CeEEEECccc---CCH---HHHHHHH
Confidence            999999999876 89999999999999999999999  9999999999   554   4444443

; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.

>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]

Probab=99.35  E-value=5.7e-12  Score=119.22  Aligned_cols=121  Identities=20%  Similarity=0.208  Sum_probs=99.0

Q ss_pred             CCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccc
Q 021156          161 TSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGK  240 (316)
Q Consensus       161 gt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~  240 (316)
                      |+.+..+    |+++.++++.. ...+-+.+.+|++       +..-    .-+..+.++.+++.|++.+.+|+++++..
T Consensus       119 Ga~L~~~----~eLv~e~V~~v-~~~l~~pVs~KIR-------I~~d----~~kTvd~ak~~e~aG~~~ltVHGRtr~~k  182 (358)
T KOG2335|consen  119 GAFLMDN----PELVGEMVSAV-RANLNVPVSVKIR-------IFVD----LEKTVDYAKMLEDAGVSLLTVHGRTREQK  182 (358)
T ss_pred             cceeccC----HHHHHHHHHHH-HhhcCCCeEEEEE-------ecCc----HHHHHHHHHHHHhCCCcEEEEecccHHhc
Confidence            5666665    99999999887 3555555666542       2211    12467999999999999999999999866


Q ss_pred             c--CCC-CHHHHHHHhhcCC-CcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccH
Q 021156          241 K--LGI-DDELVALLGKYSP-IPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAY  300 (316)
Q Consensus       241 ~--~G~-d~eli~~l~~~~~-iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~  300 (316)
                      .  .|+ ||+.++.+++... +|||++|+|.+.+|+.++++.. |++|||+|+++  +.||+.|
T Consensus       183 g~~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~t-G~dGVM~argl--L~NPa~F  243 (358)
T KOG2335|consen  183 GLKTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYT-GADGVMSARGL--LYNPALF  243 (358)
T ss_pred             CCCCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHh-CCceEEecchh--hcCchhh
Confidence            5  677 9999999998776 9999999999999999999965 59999999999  9999887

>PRK14024 phosphoribosyl isomerase A; Provisional

Probab=99.34  E-value=1.8e-11  Score=112.15  Aligned_cols=113  Identities=20%  Similarity=0.183  Sum_probs=95.1

Q ss_pred             eEEEeeeeeecCCeeEEEeCCcc----eecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEE
Q 021156          186 RLVLDLSCRKKDGKYAIVTDRWQ----KFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVT  261 (316)
Q Consensus       186 ~IvvslD~k~~~g~~~v~~~gw~----~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVI  261 (316)
                      +|++++|++  +|+ .|+...+.    ...+ ++.+.++.+.+.|++++.+.|++... ..+.|.++++++.+.+++|++
T Consensus         5 ~iIP~idl~--~G~-~V~~~~g~~~~~~~~~-dp~~~a~~~~~~g~~~l~ivDLd~~~-g~~~n~~~i~~i~~~~~~pv~   79 (241)
T PRK14024          5 TLLPAVDVV--DGQ-AVRLVQGEAGSETSYG-SPLDAALAWQRDGAEWIHLVDLDAAF-GRGSNRELLAEVVGKLDVKVE   79 (241)
T ss_pred             EEEEEEEeE--CCE-EEEeecccccCceECC-CHHHHHHHHHHCCCCEEEEEeccccC-CCCccHHHHHHHHHHcCCCEE
Confidence            799999998  886 77665554    2333 89999999999999999888887653 567799999999999999999


Q ss_pred             EEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHH
Q 021156          262 YAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWH  307 (316)
Q Consensus       262 asGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~  307 (316)
                      ++|||+|.||++++++.|  ++.+++|+++  ++++=.++++.+..
T Consensus        80 vgGGirs~edv~~~l~~G--a~kvviGs~~--l~~p~l~~~i~~~~  121 (241)
T PRK14024         80 LSGGIRDDESLEAALATG--CARVNIGTAA--LENPEWCARVIAEH  121 (241)
T ss_pred             EcCCCCCHHHHHHHHHCC--CCEEEECchH--hCCHHHHHHHHHHh
Confidence            999999999999999998  9999999999  98765566665433

>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]

Probab=99.33  E-value=2.2e-11  Score=110.26  Aligned_cols=113  Identities=21%  Similarity=0.241  Sum_probs=96.7

Q ss_pred             eEEEeeeeeecCCeeEEEeCCcce----ecccCHHHHHHHHHHcCCCEEEEeecCCccccCC-C-CHHHHHHHhhcCCCc
Q 021156          186 RLVLDLSCRKKDGKYAIVTDRWQK----FSDVYLDERVLDFLASYADEFLVHGVDVEGKKLG-I-DDELVALLGKYSPIP  259 (316)
Q Consensus       186 ~IvvslD~k~~~g~~~v~~~gw~~----~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G-~-d~eli~~l~~~~~iP  259 (316)
                      .|++++|++  +|+ .|+..+++.    ....+|.+.++.+.+.|+..  +|-+|.||...| + |.++++++.+.+++|
T Consensus         3 ~iiPAIDl~--~G~-~VRL~qGd~~~~~~y~~~P~~~a~~~~~~Ga~~--lHlVDLdgA~~g~~~n~~~i~~i~~~~~~~   77 (241)
T COG0106           3 IIIPAIDLK--DGK-VVRLVQGDYGKETVYSDDPLEVAKKWSDQGAEW--LHLVDLDGAKAGGPRNLEAIKEILEATDVP   77 (241)
T ss_pred             eEEEeEEee--CCE-EEEeecccCCcceEecCCHHHHHHHHHHcCCcE--EEEeeccccccCCcccHHHHHHHHHhCCCC
Confidence            478999998  897 888766642    23458999999999999995  599999999844 3 889999999999999


Q ss_pred             EEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHHhh
Q 021156          260 VTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQQ  310 (316)
Q Consensus       260 VIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~~~  310 (316)
                      |..+|||+|.++++++++.|  +..|++|++.  +++   ++.+.++++++
T Consensus        78 vQvGGGIRs~~~v~~ll~~G--~~rViiGt~a--v~~---p~~v~~~~~~~  121 (241)
T COG0106          78 VQVGGGIRSLEDVEALLDAG--VARVIIGTAA--VKN---PDLVKELCEEY  121 (241)
T ss_pred             EEeeCCcCCHHHHHHHHHCC--CCEEEEecce--ecC---HHHHHHHHHHc
Confidence            99999999999999999998  9999999999  886   45566667665

>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase

Probab=99.30  E-value=4e-11  Score=108.70  Aligned_cols=113  Identities=17%  Similarity=0.188  Sum_probs=92.1

Q ss_pred             EEEeeeeeecCCeeEEE-eCCcceec---ccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEE
Q 021156          187 LVLDLSCRKKDGKYAIV-TDRWQKFS---DVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTY  262 (316)
Q Consensus       187 IvvslD~k~~~g~~~v~-~~gw~~~~---~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIa  262 (316)
                      |++++|++  +|+ .|+ ..||.+..   ..++.+.++.+.+.|++++.+.|.+...+..+.|+++++++++.+++|+++
T Consensus         1 iip~id~~--~g~-~v~~~~G~~~~~~~~~~dp~~~a~~~~~~g~~~l~v~dl~~~~~g~~~~~~~i~~i~~~~~~pi~~   77 (230)
T TIGR00007         1 IIPAIDIK--DGK-CVRLYQGDYDKETVYGDDPVEAAKKWEEEGAERIHVVDLDGAKEGGPVNLPVIKKIVRETGVPVQV   77 (230)
T ss_pred             CEeEEEee--CCE-EEEeeccccCcceEecCCHHHHHHHHHHcCCCEEEEEeCCccccCCCCcHHHHHHHHHhcCCCEEE
Confidence            57999998  885 554 56887543   458999999999999999988766654445556999999999989999999


Q ss_pred             EeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHH
Q 021156          263 AGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAW  306 (316)
Q Consensus       263 sGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~  306 (316)
                      +|||++.+|++++++.|  ++.|++|+++  ++++-.+.++.+.
T Consensus        78 ggGI~~~ed~~~~~~~G--a~~vvlgs~~--l~d~~~~~~~~~~  117 (230)
T TIGR00007        78 GGGIRSLEDVEKLLDLG--VDRVIIGTAA--VENPDLVKELLKE  117 (230)
T ss_pred             eCCcCCHHHHHHHHHcC--CCEEEEChHH--hhCHHHHHHHHHH
Confidence            99999999999999998  9999999999  8765444444433

Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).

>cd04732 HisA HisA

Probab=99.27  E-value=7.3e-11  Score=107.05  Aligned_cols=115  Identities=19%  Similarity=0.182  Sum_probs=95.1

Q ss_pred             eEEEeeeeeecCCeeEEEe-CCcce---ecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEE
Q 021156          186 RLVLDLSCRKKDGKYAIVT-DRWQK---FSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVT  261 (316)
Q Consensus       186 ~IvvslD~k~~~g~~~v~~-~gw~~---~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVI  261 (316)
                      .|+++||++  +|+ .|+. .|+..   ....++.+.++.+.+.|++++.++|+++..+..+.|+++++++++.+++|++
T Consensus         1 ~iip~idl~--~g~-~v~~~~G~~~~~~~~~~dp~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~~~~pv~   77 (234)
T cd04732           1 IIIPAIDLK--DGK-CVRLYQGDYDKKTVYSDDPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVKAVGIPVQ   77 (234)
T ss_pred             CEEEEEEeE--CCE-EEEeecccCCCCeEECCCHHHHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHHhcCCCEE
Confidence            378999998  885 5554 34432   2234899999999999999999998887545577899999999998899999


Q ss_pred             EEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHH
Q 021156          262 YAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWH  307 (316)
Q Consensus       262 asGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~  307 (316)
                      ++|||+++++++++++.|  ++.|++|+++  ++.+..++++.+.+
T Consensus        78 ~~GgI~~~e~~~~~~~~G--ad~vvigs~~--l~dp~~~~~i~~~~  119 (234)
T cd04732          78 VGGGIRSLEDIERLLDLG--VSRVIIGTAA--VKNPELVKELLKEY  119 (234)
T ss_pred             EeCCcCCHHHHHHHHHcC--CCEEEECchH--HhChHHHHHHHHHc
Confidence            999999999999999988  9999999999  88776666665543

Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.

>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=99.26  E-value=7.3e-11  Score=107.80  Aligned_cols=113  Identities=10%  Similarity=0.063  Sum_probs=91.7

Q ss_pred             eEEEeeeeeecCCeeEEEeCCcce----ecccCHHHHHHHHHH-cCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcE
Q 021156          186 RLVLDLSCRKKDGKYAIVTDRWQK----FSDVYLDERVLDFLA-SYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPV  260 (316)
Q Consensus       186 ~IvvslD~k~~~g~~~v~~~gw~~----~~~~~~~e~a~~~~~-~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPV  260 (316)
                      +|++++|++  +|+ .|+...+..    ...-++.+.++.+.+ .|++++.+-|++..-.....|+++++++++.+++|+
T Consensus         3 ~iiPaIDl~--~G~-~Vr~~~G~~~~~~~~~~dp~~~a~~~~~~~Ga~~l~ivDLd~a~~~~~~n~~~I~~i~~~~~~pi   79 (234)
T PRK13587          3 ELWPAIDLI--GST-SVRLTEGKYDSEEKMSRSAEESIAYYSQFECVNRIHIVDLIGAKAQHAREFDYIKSLRRLTTKDI   79 (234)
T ss_pred             EEEEEEEcc--CCE-EEEcCcccCCCceEeCCCHHHHHHHHHhccCCCEEEEEECcccccCCcchHHHHHHHHhhcCCeE
Confidence            589999998  886 777755532    223378999999999 699999777766443345569999999999999999


Q ss_pred             EEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156          261 TYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVA  305 (316)
Q Consensus       261 IasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~  305 (316)
                      +++|||+|.+|++++++.|  ++.|++|++.  ++++--++++.+
T Consensus        80 ~vGGGIrs~e~v~~~l~~G--a~kvvigt~a--~~~~~~l~~~~~  120 (234)
T PRK13587         80 EVGGGIRTKSQIMDYFAAG--INYCIVGTKG--IQDTDWLKEMAH  120 (234)
T ss_pred             EEcCCcCCHHHHHHHHHCC--CCEEEECchH--hcCHHHHHHHHH
Confidence            9999999999999999998  9999999999  887644555543

>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes

Probab=99.25  E-value=3e-11  Score=109.97  Aligned_cols=115  Identities=20%  Similarity=0.302  Sum_probs=92.9

Q ss_pred             eEEEeeeeeecCCeeEEEeCCcce----ecccCHHHHHHHHHHcCCCEEEEeecCCcccc--CCCCHHHHHHHhhcCCCc
Q 021156          186 RLVLDLSCRKKDGKYAIVTDRWQK----FSDVYLDERVLDFLASYADEFLVHGVDVEGKK--LGIDDELVALLGKYSPIP  259 (316)
Q Consensus       186 ~IvvslD~k~~~g~~~v~~~gw~~----~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~--~G~d~eli~~l~~~~~iP  259 (316)
                      +|++++|++  +|+ .|+...+..    ...-+|.+.++.+.+.|++++.+.|++  +..  .+.|+++++++++.+.+|
T Consensus         1 ~iiP~iDl~--~G~-~Vr~~~G~~~~~~~~~~dP~~~a~~~~~~g~~~l~ivDLd--aa~~g~~~n~~~i~~i~~~~~~~   75 (229)
T PF00977_consen    1 RIIPAIDLK--NGR-VVRLVKGDRFSETVYSGDPVEVAKAFNEQGADELHIVDLD--AAKEGRGSNLELIKEIAKETGIP   75 (229)
T ss_dssp             EEEEEEEEE--TTE-EEEESTTCCSCEECECCCHHHHHHHHHHTT-SEEEEEEHH--HHCCTHHHHHHHHHHHHHHSSSE
T ss_pred             CEEEEEEEE--CCE-EEECCCeecceeeEECcCHHHHHHHHHHcCCCEEEEEEcc--CcccCchhHHHHHHHHHhcCCcc
Confidence            589999998  886 776655543    234589999999999999999777765  454  345899999999999999


Q ss_pred             EEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHHh
Q 021156          260 VTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       260 VIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~~  309 (316)
                      ++++|||++.+|++++++.|  ++.|++|++.  ++++-.++++.+....
T Consensus        76 i~vgGGIrs~ed~~~ll~~G--a~~Vvigt~~--~~~~~~l~~~~~~~g~  121 (229)
T PF00977_consen   76 IQVGGGIRSIEDAERLLDAG--ADRVVIGTEA--LEDPELLEELAERYGS  121 (229)
T ss_dssp             EEEESSE-SHHHHHHHHHTT---SEEEESHHH--HHCCHHHHHHHHHHGG
T ss_pred             EEEeCccCcHHHHHHHHHhC--CCEEEeChHH--hhchhHHHHHHHHcCc
Confidence            99999999999999999999  9999999999  9988777777665444

Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....

>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate

Probab=99.24  E-value=9.3e-10  Score=99.25  Aligned_cols=173  Identities=19%  Similarity=0.068  Sum_probs=115.0

Q ss_pred             ecCCccCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHH-hCCCcEEE----ec---C--C--CHHHHHHHHHcCC
Q 021156           88 NFESDKSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALH-AYPGGLQV----GG---G--I--NSDNSLSYIEEGA  155 (316)
Q Consensus        88 ~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~-~~~~pl~v----GG---G--I--r~e~~~~~l~~Ga  155 (316)
                      ++....++.++|+.+.+.|+..+-   .     +....++.++ ..++|+..    +-   .  |  ..++++.+.++||
T Consensus        22 ~~~~~~~i~~~a~~~~~~G~~~~~---~-----~~~~~~~~i~~~~~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aGa   93 (219)
T cd04729          22 PLHSPEIMAAMALAAVQGGAVGIR---A-----NGVEDIRAIRARVDLPIIGLIKRDYPDSEVYITPTIEEVDALAAAGA   93 (219)
T ss_pred             CcCcHHHHHHHHHHHHHCCCeEEE---c-----CCHHHHHHHHHhCCCCEEEEEecCCCCCCceeCCCHHHHHHHHHcCC
Confidence            343234678999999999976432   1     2223444444 36778752    21   1  1  2468999999999


Q ss_pred             CEEEeCCeeecCC--CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEe
Q 021156          156 THVIVTSYVFNNG--QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVH  233 (316)
Q Consensus       156 d~VVigt~~~~~~--~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvt  233 (316)
                      +.|++......++  +...++++++.+.. .  +.+.+++.                    ..+.+..+.+.|++.+.++
T Consensus        94 d~I~~~~~~~~~p~~~~~~~~i~~~~~~g-~--~~iiv~v~--------------------t~~ea~~a~~~G~d~i~~~  150 (219)
T cd04729          94 DIIALDATDRPRPDGETLAELIKRIHEEY-N--CLLMADIS--------------------TLEEALNAAKLGFDIIGTT  150 (219)
T ss_pred             CEEEEeCCCCCCCCCcCHHHHHHHHHHHh-C--CeEEEECC--------------------CHHHHHHHHHcCCCEEEcc
Confidence            9998876554321  11234555554433 1  22222321                    1255688889999987653


Q ss_pred             ecCCcc---ccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhcc
Q 021156          234 GVDVEG---KKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFG  295 (316)
Q Consensus       234 di~~dG---~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~  295 (316)
                      .....+   ...+++++.++++++.+++|++++|||++.+|+.++++.|  +++|++|+++  +.
T Consensus       151 ~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia~GGI~~~~~~~~~l~~G--adgV~vGsal--~~  211 (219)
T cd04729         151 LSGYTEETAKTEDPDFELLKELRKALGIPVIAEGRINSPEQAAKALELG--ADAVVVGSAI--TR  211 (219)
T ss_pred             CccccccccCCCCCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHCC--CCEEEEchHH--hC
Confidence            332222   1346789999999988899999999999999999999998  9999999999  64

This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.

>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative

Probab=99.24  E-value=4.6e-10  Score=102.18  Aligned_cols=182  Identities=15%  Similarity=0.081  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHcCCCcceEEEecCCcc-cHHHHHHHHHhCCCcEEEecCCC-H---HHHHHHHHcCCCEEEeCCeeecC--
Q 021156           95 AAEFANLYKEDGLTGGHAIMLGADPL-SKAAAIEALHAYPGGLQVGGGIN-S---DNSLSYIEEGATHVIVTSYVFNN--  167 (316)
Q Consensus        95 p~e~a~~~~~~G~~~l~lvDLda~~~-~~~~i~~~v~~~~~pl~vGGGIr-~---e~~~~~l~~Gad~VVigt~~~~~--  167 (316)
                      -.+.++...+.|-++. +.|++.-.. ...++ ..++ ...|+.+-=|-. .   .++-+.++.+++.+=|++.....  
T Consensus        31 t~~a~~~~~~rgr~ef-~~~~e~~~~~i~~e~-~~~~-~~~~vivnv~~~~~ee~~~~a~~v~~~~d~IdiN~gCP~~~v  107 (231)
T TIGR00736        31 TYKASRDIEKRGRKEF-SFNLEEFNSYIIEQI-KKAE-SRALVSVNVRFVDLEEAYDVLLTIAEHADIIEINAHCRQPEI  107 (231)
T ss_pred             HHHHHHHHHHcCCccc-CcCcccHHHHHHHHH-HHHh-hcCCEEEEEecCCHHHHHHHHHHHhcCCCEEEEECCCCcHHH
Confidence            3456777888886664 455433111 11122 2222 234554443332 2   33444456688887775443221  


Q ss_pred             -----CC---CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCcc
Q 021156          168 -----GQ---MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEG  239 (316)
Q Consensus       168 -----~~---~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG  239 (316)
                           |.   -+|+++.++.+... + .-+.+.+|.+        -+|.   ..+..++++.+++.|++.+.+|.... |
T Consensus       108 ~~~g~G~~Ll~dp~~l~~iv~av~-~-~~~PVsvKiR--------~~~~---~~~~~~~a~~l~~aGad~i~Vd~~~~-g  173 (231)
T TIGR00736       108 TEIGIGQELLKNKELLKEFLTKMK-E-LNKPIFVKIR--------GNCI---PLDELIDALNLVDDGFDGIHVDAMYP-G  173 (231)
T ss_pred             cCCCCchhhcCCHHHHHHHHHHHH-c-CCCcEEEEeC--------CCCC---cchHHHHHHHHHHcCCCEEEEeeCCC-C
Confidence                 10   14999999998873 2 2234544422        1232   23578999999999999998864321 1


Q ss_pred             ccCC-CCHHHHHHHhhcCC-CcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCccc
Q 021156          240 KKLG-IDDELVALLGKYSP-IPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLA  299 (316)
Q Consensus       240 ~~~G-~d~eli~~l~~~~~-iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~  299 (316)
                        .+ .||+.++++++.++ +|||++|||.|.+|+.++++.|  +++|+|||++  +.|++.
T Consensus       174 --~~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~G--Ad~VmvgR~~--l~~~~~  229 (231)
T TIGR00736       174 --KPYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAG--ADFVSVARAI--LKGNVE  229 (231)
T ss_pred             --CchhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhC--CCeEEEcHhh--ccCCcC
Confidence              12 49999999999874 9999999999999999999987  9999999999  988764

Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.

>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed

Probab=99.24  E-value=1.4e-09  Score=100.95  Aligned_cols=181  Identities=18%  Similarity=0.123  Sum_probs=123.9

Q ss_pred             ccCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHH-hCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCC
Q 021156           92 DKSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALH-AYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQ  169 (316)
Q Consensus        92 ~~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~-~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~  169 (316)
                      ..+|.++|+.|.+.|+..+.+.-=..-...+...++.++ .+++|+..=-=|. ..++..++++|||.|.+....+.   
T Consensus        69 ~~~~~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~v~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~l~---  145 (260)
T PRK00278         69 DFDPVEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAAVSLPVLRKDFIIDPYQIYEARAAGADAILLIVAALD---  145 (260)
T ss_pred             CCCHHHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHhcCCCEEeeeecCCHHHHHHHHHcCCCEEEEEeccCC---
Confidence            358999999999999988754211111122333444444 5889998633233 47899999999999999887765   


Q ss_pred             CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHH
Q 021156          170 MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELV  249 (316)
Q Consensus       170 ~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli  249 (316)
                        ++.++++.+..-.-..-+-+|+.                   + .+.++++.+.|++-+-+|.++..  ...+|++..
T Consensus       146 --~~~l~~li~~a~~lGl~~lvevh-------------------~-~~E~~~A~~~gadiIgin~rdl~--~~~~d~~~~  201 (260)
T PRK00278        146 --DEQLKELLDYAHSLGLDVLVEVH-------------------D-EEELERALKLGAPLIGINNRNLK--TFEVDLETT  201 (260)
T ss_pred             --HHHHHHHHHHHHHcCCeEEEEeC-------------------C-HHHHHHHHHcCCCEEEECCCCcc--cccCCHHHH
Confidence              44555555443110122334442                   1 23446677889998888876653  346789988


Q ss_pred             HHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHH
Q 021156          250 ALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVV  304 (316)
Q Consensus       250 ~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~  304 (316)
                      .++.+..  ..|+|+.|||.+++|+.++.+.|  +++|+||+++  .... ++.+..
T Consensus       202 ~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~G--ad~vlVGsaI--~~~~-dp~~~~  253 (260)
T PRK00278        202 ERLAPLIPSDRLVVSESGIFTPEDLKRLAKAG--ADAVLVGESL--MRAD-DPGAAL  253 (260)
T ss_pred             HHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcC--CCEEEECHHH--cCCC-CHHHHH
Confidence            8887654  36999999999999999999998  9999999999  6443 444433

>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=99.22  E-value=1.6e-10  Score=106.03  Aligned_cols=112  Identities=15%  Similarity=0.102  Sum_probs=91.2

Q ss_pred             eEEEeeeeeecCCeeEEEeCCcce----ecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEE
Q 021156          186 RLVLDLSCRKKDGKYAIVTDRWQK----FSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVT  261 (316)
Q Consensus       186 ~IvvslD~k~~~g~~~v~~~gw~~----~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVI  261 (316)
                      +|++++|++  +|+ .|+...+..    ...-+|.+.++.+.+.|++++.+.|++..-...+.|+++++++.+.+ .|+.
T Consensus         2 ~IIPaIDl~--~Gk-~Vrl~~G~~~~~~~~~~dP~~~A~~~~~~ga~~lhivDLd~a~~g~~~n~~~i~~i~~~~-~~v~   77 (241)
T PRK14114          2 LVVPAIDLF--RGK-VARMVKGKKENTIFYEKDPAELVEKLIEEGFTLIHVVDLSKAIENSVENLPVLEKLSEFA-EHIQ   77 (241)
T ss_pred             EEEEEEEEE--CCE-EEEeeccccCcceEECCCHHHHHHHHHHCCCCEEEEEECCCcccCCcchHHHHHHHHhhc-CcEE
Confidence            489999998  886 666544432    22348999999999999999877777643234567999999999877 7999


Q ss_pred             EEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156          262 YAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVA  305 (316)
Q Consensus       262 asGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~  305 (316)
                      ++|||+|.+|++++++.|  ++.|++|++.  ++++-.++++.+
T Consensus        78 vGGGIrs~e~~~~~l~~G--a~rvvigT~a--~~~p~~l~~~~~  117 (241)
T PRK14114         78 IGGGIRSLDYAEKLRKLG--YRRQIVSSKV--LEDPSFLKFLKE  117 (241)
T ss_pred             EecCCCCHHHHHHHHHCC--CCEEEECchh--hCCHHHHHHHHH
Confidence            999999999999999998  9999999999  998766777644

>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=99.22  E-value=1.9e-10  Score=105.01  Aligned_cols=111  Identities=14%  Similarity=0.158  Sum_probs=91.0

Q ss_pred             eEEEeeeeeecCCeeEEEeCCcce----ecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEE
Q 021156          186 RLVLDLSCRKKDGKYAIVTDRWQK----FSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVT  261 (316)
Q Consensus       186 ~IvvslD~k~~~g~~~v~~~gw~~----~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVI  261 (316)
                      +|++++|++  +|+ .|+..++..    ..+ +|.+.++.+.+.|++++.+.|++.. ...+.|.+.++++.+.+..|+.
T Consensus         3 ~iIP~iDl~--~G~-~Vr~~~G~~~~~~~~~-dP~~~a~~~~~~ga~~lhivDLd~a-~~~~~n~~~i~~i~~~~~~~v~   77 (232)
T PRK13586          3 KIIPSIDIS--LGK-AVKRIRGVKGTGLILG-NPIEIASKLYNEGYTRIHVVDLDAA-EGVGNNEMYIKEISKIGFDWIQ   77 (232)
T ss_pred             EEEEEEEEE--CCE-EEEeeecCCCCceEcC-CHHHHHHHHHHCCCCEEEEEECCCc-CCCcchHHHHHHHHhhCCCCEE
Confidence            689999998  886 787766542    223 8999999999999999988887654 3456699999999885445999


Q ss_pred             EEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156          262 YAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVA  305 (316)
Q Consensus       262 asGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~  305 (316)
                      ++|||+|.+|++++++.|  ++.|++|++.  ++++-.++++.+
T Consensus        78 vGGGIrs~e~~~~~l~~G--a~kvvigt~a--~~~p~~~~~~~~  117 (232)
T PRK13586         78 VGGGIRDIEKAKRLLSLD--VNALVFSTIV--FTNFNLFHDIVR  117 (232)
T ss_pred             EeCCcCCHHHHHHHHHCC--CCEEEECchh--hCCHHHHHHHHH
Confidence            999999999999999998  9999999999  987655555443

>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase

Probab=99.21  E-value=1.7e-10  Score=106.31  Aligned_cols=113  Identities=14%  Similarity=0.027  Sum_probs=93.0

Q ss_pred             eEEEeeeeeecCCeeEEEeCCcce-e------------c--c--cCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHH
Q 021156          186 RLVLDLSCRKKDGKYAIVTDRWQK-F------------S--D--VYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDEL  248 (316)
Q Consensus       186 ~IvvslD~k~~~g~~~v~~~gw~~-~------------~--~--~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~el  248 (316)
                      |.+++||++  +|+ .|+..++.. .            +  .  .+|.+.|+.+.+.|++.+  |-+|.|| ..+-|.++
T Consensus         2 ~~~PAIDl~--~Gk-~VrL~~G~~~~~~~~~~~~~~~~~~y~~~~dP~~~A~~~~~~Ga~~l--HvVDLdg-g~~~n~~~   75 (262)
T PLN02446          2 RFRPCIDIH--KGK-VKQIVGSTLKDSKDGSEDGSELVTNFESDKSAAEFAEMYKRDGLTGG--HVIMLGA-DDASLAAA   75 (262)
T ss_pred             CeeeeEEee--CCE-EEEeeCccccccccccccCCCceEEeCCCCCHHHHHHHHHHCCCCEE--EEEECCC-CCcccHHH
Confidence            568999998  887 887765543 1            1  1  589999999999999965  7777777 56669999


Q ss_pred             HHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccC-cccHHHHHHHHHhh
Q 021156          249 VALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGG-NLAYKDVVAWHAQQ  310 (316)
Q Consensus       249 i~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g-~~~~~~~~~~~~~~  310 (316)
                      ++++++ +++||.++|||++ ++++++++.|  ++.|++|+++  +++ .++++-+.++++.+
T Consensus        76 i~~i~~-~~~~vqvGGGIR~-e~i~~~l~~G--a~rViigT~A--v~~~~~~p~~v~~~~~~~  132 (262)
T PLN02446         76 LEALRA-YPGGLQVGGGVNS-ENAMSYLDAG--ASHVIVTSYV--FRDGQIDLERLKDLVRLV  132 (262)
T ss_pred             HHHHHh-CCCCEEEeCCccH-HHHHHHHHcC--CCEEEEchHH--HhCCCCCHHHHHHHHHHh
Confidence            999998 8899999999996 9999999999  9999999999  885 45566666666665

>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa

Probab=99.19  E-value=2.2e-09  Score=99.19  Aligned_cols=168  Identities=21%  Similarity=0.141  Sum_probs=119.1

Q ss_pred             CHHHHHHHHHHcCCCcceEE-----EecCC----cccHHHHHHHHH-hCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCC
Q 021156           94 SAAEFANLYKEDGLTGGHAI-----MLGAD----PLSKAAAIEALH-AYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTS  162 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lv-----DLda~----~~~~~~i~~~v~-~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt  162 (316)
                      +| +.|+.-+++|+-.+-+.     |+-..    ..+.+..++.++ .+++|++-=-=+. ..+++.+.++|+|.|  +.
T Consensus        17 ~~-~qa~~ae~aga~~v~~~~~~~~~~~~~~~v~R~~~~~~I~~Ik~~V~iPVIGi~K~~~~~Ea~~L~eaGvDiI--Da   93 (283)
T cd04727          17 NA-EQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDMI--DE   93 (283)
T ss_pred             CH-HHHHHHHHcCceEEeeeccCchhhhhcCCeeecCCHHHHHHHHHhCCCCeEEeeehhHHHHHHHHHHcCCCEE--ec
Confidence            44 48888888997765552     22211    135555666665 6899988322222 588999999999988  44


Q ss_pred             eeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEee--------
Q 021156          163 YVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHG--------  234 (316)
Q Consensus       163 ~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtd--------  234 (316)
                      +.+.+|  ..+++..+.++|+   +.+..|+.                    .++.+.+..++|++.|=-|-        
T Consensus        94 T~r~rP--~~~~~~~iK~~~~---~l~MAD~s--------------------tleEal~a~~~Gad~I~TTl~gyT~~~~  148 (283)
T cd04727          94 SEVLTP--ADEEHHIDKHKFK---VPFVCGAR--------------------NLGEALRRISEGAAMIRTKGEAGTGNVV  148 (283)
T ss_pred             cCCCCc--HHHHHHHHHHHcC---CcEEccCC--------------------CHHHHHHHHHCCCCEEEecCCCCCCcHH
Confidence            444441  1378888888782   44566664                    24677888888998764221        


Q ss_pred             ------------------cCCcc-----ccCCCCHHHHHHHhhcCCCcEE--EEeCCCCHHHHHHHHHhCCCcCEEEEcc
Q 021156          235 ------------------VDVEG-----KKLGIDDELVALLGKYSPIPVT--YAGGVTTMADLEKIKVAGIGRVDVTVGS  289 (316)
Q Consensus       235 ------------------i~~dG-----~~~G~d~eli~~l~~~~~iPVI--asGGI~s~eDi~~l~~~G~g~~gVivG~  289 (316)
                                        .+.+.     ...++|+++++++.+..++||+  +.|||.+++++.++++.|  +++|+||+
T Consensus       149 ~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~~iPVV~iAeGGI~Tpena~~v~e~G--AdgVaVGS  226 (283)
T cd04727         149 EAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLGRLPVVNFAAGGVATPADAALMMQLG--ADGVFVGS  226 (283)
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHcC--CCEEEEcH
Confidence                              01111     1246899999999998899997  999999999999999998  99999999


Q ss_pred             ch
Q 021156          290 AL  291 (316)
Q Consensus       290 Al  291 (316)
                      ++
T Consensus       227 AI  228 (283)
T cd04727         227 GI  228 (283)
T ss_pred             Hh
Confidence            99

Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.

>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=99.19  E-value=2.9e-10  Score=103.80  Aligned_cols=111  Identities=16%  Similarity=0.169  Sum_probs=91.4

Q ss_pred             eEEEeeeeeecCCeeEEEeCCcce----------ecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhc
Q 021156          186 RLVLDLSCRKKDGKYAIVTDRWQK----------FSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKY  255 (316)
Q Consensus       186 ~IvvslD~k~~~g~~~v~~~gw~~----------~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~  255 (316)
                      +|++++|++  +|+ .|+..++..          ...-++.+.++.+.+.|++++.+-|+++. ...+.|.++++++.+.
T Consensus         1 riiP~iDl~--~G~-~V~~~~G~~~~~~p~~~~~~~~~dp~~~a~~~~~~g~~~l~i~DLd~~-~~~~~n~~~i~~i~~~   76 (233)
T cd04723           1 RIIPVIDLK--DGV-VVHGVGGDRDNYRPITSNLCSTSDPLDVARAYKELGFRGLYIADLDAI-MGRGDNDEAIRELAAA   76 (233)
T ss_pred             CeEEEEECc--CCE-EEEeeccChhhccccccCcccCCCHHHHHHHHHHCCCCEEEEEeCccc-cCCCccHHHHHHHHHh
Confidence            589999998  886 777655441          11348999999999999999988888765 3566799999999998


Q ss_pred             CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156          256 SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVA  305 (316)
Q Consensus       256 ~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~  305 (316)
                      +.+|+.++|||++.+|+.++++.|  ++.|++|+..  +.+ -.++++.+
T Consensus        77 ~~~~v~vgGGir~~edv~~~l~~G--a~~viigt~~--~~~-~~~~~~~~  121 (233)
T cd04723          77 WPLGLWVDGGIRSLENAQEWLKRG--ASRVIVGTET--LPS-DDDEDRLA  121 (233)
T ss_pred             CCCCEEEecCcCCHHHHHHHHHcC--CCeEEEccee--ccc-hHHHHHHH
Confidence            899999999999999999999998  9999999999  876 33444443

The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl

>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=99.14  E-value=6.9e-10  Score=101.29  Aligned_cols=114  Identities=14%  Similarity=0.130  Sum_probs=90.4

Q ss_pred             eEEEeeeeeecCCeeEEEeCCcc----eecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEE
Q 021156          186 RLVLDLSCRKKDGKYAIVTDRWQ----KFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVT  261 (316)
Q Consensus       186 ~IvvslD~k~~~g~~~v~~~gw~----~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVI  261 (316)
                      +|++++|++  +|+ .|...++.    ....-++.+.++.+.+.|++++.+-|.+..-...+.+++.++++++.+++|++
T Consensus         4 ~iip~idl~--~g~-~v~~~~g~~~~~~~~~~~~~e~a~~~~~~G~~~l~i~dl~~~~~~~~~~~~~i~~i~~~~~~~l~   80 (241)
T PRK13585          4 EVIPAVDMK--GGK-CVQLVQGEPGTETVSYGDPVEVAKRWVDAGAETLHLVDLDGAFEGERKNAEAIEKIIEAVGVPVQ   80 (241)
T ss_pred             EEEEEEEeE--CCe-EEEeeccccCCceEECCCHHHHHHHHHHcCCCEEEEEechhhhcCCcccHHHHHHHHHHcCCcEE
Confidence            699999998  886 66665553    12234799999999999999875554443323345689999999999999999


Q ss_pred             EEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHH
Q 021156          262 YAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAW  306 (316)
Q Consensus       262 asGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~  306 (316)
                      ++|||++.+|+..+++.|  +++|++|+++  +..+-.+.++.+.
T Consensus        81 v~GGi~~~~~~~~~~~~G--a~~v~iGs~~--~~~~~~~~~i~~~  121 (241)
T PRK13585         81 LGGGIRSAEDAASLLDLG--VDRVILGTAA--VENPEIVRELSEE  121 (241)
T ss_pred             EcCCcCCHHHHHHHHHcC--CCEEEEChHH--hhChHHHHHHHHH
Confidence            999999999999999998  9999999999  8776555555544

>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase

Probab=99.12  E-value=9e-10  Score=101.18  Aligned_cols=110  Identities=16%  Similarity=0.150  Sum_probs=89.8

Q ss_pred             eEEEeeeeeecCCeeEEEeCCcc----eecccCHHHHHHHHHHcCCCEEEEeecCCccc-cCCCCHHHHHHHhhcCCCcE
Q 021156          186 RLVLDLSCRKKDGKYAIVTDRWQ----KFSDVYLDERVLDFLASYADEFLVHGVDVEGK-KLGIDDELVALLGKYSPIPV  260 (316)
Q Consensus       186 ~IvvslD~k~~~g~~~v~~~gw~----~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~-~~G~d~eli~~l~~~~~iPV  260 (316)
                      .|++++|++  +|+ .|+..+++    +..+ ++.+.++.+.+.|++.+.  -+|.|+. ..+.|.++++++.+.+++|+
T Consensus         4 ~iiPaIDl~--~G~-vVrl~~G~~~~~~~y~-~p~~~a~~~~~~g~~~lh--ivDLd~a~g~~~n~~~i~~i~~~~~~~v   77 (243)
T TIGR01919         4 ILLPAVDVN--GGA-AVRLQQGAGGSKTYYG-SLESAAKWWEQGGAEWIH--LVDLDAAFGGGNNEMMLEEVVKLLVVVE   77 (243)
T ss_pred             EEEEEEEEE--CCE-EEEeecCCCCCceecC-CHHHHHHHHHhCCCeEEE--EEECCCCCCCcchHHHHHHHHHHCCCCE
Confidence            589999998  886 78776663    2334 889999999999988664  4445555 45669999999999889999


Q ss_pred             EEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156          261 TYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVA  305 (316)
Q Consensus       261 IasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~  305 (316)
                      .++|||+|.+|++++++.|  ++.|++|+++  ++++-.++++.+
T Consensus        78 ~vgGGIrs~e~~~~~l~~G--a~~vvigT~a--~~~p~~~~~~~~  118 (243)
T TIGR01919        78 ELSGGRRDDSSLRAALTGG--RARVNGGTAA--LENPWWAAAVIR  118 (243)
T ss_pred             EEcCCCCCHHHHHHHHHcC--CCEEEECchh--hCCHHHHHHHHH
Confidence            9999999999999999998  9999999999  887655555544

This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.

>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1

Probab=99.11  E-value=5.3e-09  Score=96.79  Aligned_cols=168  Identities=20%  Similarity=0.116  Sum_probs=115.8

Q ss_pred             CHHHHHHHHHHcCCCcceE-----EEecCC----cccHHHHHHHH-HhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCC
Q 021156           94 SAAEFANLYKEDGLTGGHA-----IMLGAD----PLSKAAAIEAL-HAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTS  162 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~l-----vDLda~----~~~~~~i~~~v-~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt  162 (316)
                      +|. .|+.-+++|+-.+-.     .|+-+.    ..+.+..++.+ +.+++|++-=--+. ..+++.+.++|+|.|  +.
T Consensus        19 ~~e-qa~iae~aga~avm~le~~p~d~r~~ggv~R~~~p~~I~~I~~~V~iPVig~~kigh~~Ea~~L~~~GvDiI--De   95 (287)
T TIGR00343        19 NPE-QAKIAEEAGAVAVMALERVPADIRASGGVARMSDPKMIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDYI--DE   95 (287)
T ss_pred             CHH-HHHHHHHcCceEEEeeccCchhhHhcCCeeecCCHHHHHHHHHhCCCCEEEEeeccHHHHHHHHHHcCCCEE--Ec
Confidence            564 888888899664333     222211    12455555555 47899998555554 689999999999988  43


Q ss_pred             eeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecC------
Q 021156          163 YVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVD------  236 (316)
Q Consensus       163 ~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~------  236 (316)
                      +.+.+|  ..+++..+.+.|+   +.+..|++                    .++.+.+..+.|++.|=-|.-.      
T Consensus        96 Te~lrP--ade~~~~~K~~f~---vpfmad~~--------------------~l~EAlrai~~GadmI~Tt~e~gTg~v~  150 (287)
T TIGR00343        96 SEVLTP--ADWTFHIDKKKFK---VPFVCGAR--------------------DLGEALRRINEGAAMIRTKGEAGTGNIV  150 (287)
T ss_pred             cCCCCc--HHHHHHHHHHHcC---CCEEccCC--------------------CHHHHHHHHHCCCCEEeccccCCCccHH
Confidence            333331  1367777777772   45666664                    1355666667777765322100      


Q ss_pred             --------------------Cc------cccCCCCHHHHHHHhhcCCCcEE--EEeCCCCHHHHHHHHHhCCCcCEEEEc
Q 021156          237 --------------------VE------GKKLGIDDELVALLGKYSPIPVT--YAGGVTTMADLEKIKVAGIGRVDVTVG  288 (316)
Q Consensus       237 --------------------~d------G~~~G~d~eli~~l~~~~~iPVI--asGGI~s~eDi~~l~~~G~g~~gVivG  288 (316)
                                          .+      -...++++++++++++..++||+  +.|||.|++|+..+++.|  +++|+||
T Consensus       151 ~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~~~~~~elLkei~~~~~iPVV~fAiGGI~TPedAa~~melG--AdGVaVG  228 (287)
T TIGR00343       151 EAVRHMRKINEEIRQIQNMLEEEDLAAVAKELRVPVELLLEVLKLGKLPVVNFAAGGVATPADAALMMQLG--ADGVFVG  228 (287)
T ss_pred             HHHHHHHHHHHHHHHHhcccchhHHhhhhcccCCCHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHcC--CCEEEEh
Confidence                                00      11236899999999998899998  999999999999999998  9999999


Q ss_pred             cch
Q 021156          289 SAL  291 (316)
Q Consensus       289 ~Al  291 (316)
                      +++
T Consensus       229 SaI  231 (287)
T TIGR00343       229 SGI  231 (287)
T ss_pred             HHh
Confidence            999

This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.

>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]

Probab=99.10  E-value=2.5e-09  Score=94.17  Aligned_cols=173  Identities=17%  Similarity=0.101  Sum_probs=121.5

Q ss_pred             HHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHhCCCcEEE-------ec--CCC--HHHHHHHHHcCCCEEEeCCeee
Q 021156           97 EFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAYPGGLQV-------GG--GIN--SDNSLSYIEEGATHVIVTSYVF  165 (316)
Q Consensus        97 e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~~~pl~v-------GG--GIr--~e~~~~~l~~Gad~VVigt~~~  165 (316)
                      .+|+.-.+.|+-++..=       ....+..+-+.+++|++-       +-  =|.  .++++.+.++||+.|.++.+.+
T Consensus        37 ~mA~Aa~~gGAvgiR~~-------gv~dIkai~~~v~vPIIGIiKrd~~~s~v~ITptlkeVd~L~~~Ga~IIA~DaT~R  109 (229)
T COG3010          37 AMALAAEQGGAVGIRIE-------GVEDIKAIRAVVDVPIIGIIKRDYPDSPVRITPTLKEVDALAEAGADIIAFDATDR  109 (229)
T ss_pred             HHHHHHHhCCcceEeec-------chhhHHHHHhhCCCCeEEEEecCCCCCCceecccHHHHHHHHHCCCcEEEeecccC
Confidence            45555555676644321       122233333357777751       11  133  2789999999999999999999


Q ss_pred             cCCCCCHH-HHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEE--EeecCC-cccc
Q 021156          166 NNGQMDLE-RLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFL--VHGVDV-EGKK  241 (316)
Q Consensus       166 ~~~~~~~e-li~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~il--vtdi~~-dG~~  241 (316)
                      ++    |+ -++++.+....-...++.|+.                    .+|....+.++|++.+-  +..-+. .-+-
T Consensus       110 ~R----P~~~~~~~i~~~k~~~~l~MAD~S--------------------t~ee~l~a~~~G~D~IGTTLsGYT~~~~~~  165 (229)
T COG3010         110 PR----PDGDLEELIARIKYPGQLAMADCS--------------------TFEEGLNAHKLGFDIIGTTLSGYTGYTEKP  165 (229)
T ss_pred             CC----CcchHHHHHHHhhcCCcEEEeccC--------------------CHHHHHHHHHcCCcEEecccccccCCCCCC
Confidence            98    65 666666543222345677763                    34677888999999763  222222 1245


Q ss_pred             CCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHHh
Q 021156          242 LGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       242 ~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~~  309 (316)
                      .+||+++++++.+ .+++||+.|.+.|++..+++++.|  +++|+||+|+   +.   ++++-+|+..
T Consensus       166 ~~pDf~lvk~l~~-~~~~vIAEGr~~tP~~Ak~a~~~G--a~aVvVGsAI---TR---p~~It~~F~~  224 (229)
T COG3010         166 TEPDFQLVKQLSD-AGCRVIAEGRYNTPEQAKKAIEIG--ADAVVVGSAI---TR---PEEITQWFVD  224 (229)
T ss_pred             CCCcHHHHHHHHh-CCCeEEeeCCCCCHHHHHHHHHhC--CeEEEECccc---CC---HHHHHHHHHH
Confidence            7899999999988 689999999999999999999999  9999999999   43   6778777654

>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional

Probab=99.09  E-value=4.8e-09  Score=97.34  Aligned_cols=168  Identities=19%  Similarity=0.121  Sum_probs=117.5

Q ss_pred             CHHHHHHHHHHcCCCcceE-----EEec--CC--cccHHHHHHHHH-hCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCC
Q 021156           94 SAAEFANLYKEDGLTGGHA-----IMLG--AD--PLSKAAAIEALH-AYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTS  162 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~l-----vDLd--a~--~~~~~~i~~~v~-~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt  162 (316)
                      +|. .|+.-+++|++++-+     -|.-  ++  -.+.+..++.++ .+++|++.=-=+- ..+++.+.++|+|.|  ..
T Consensus        26 ~~~-~a~iae~~g~~~v~~~~~~psd~~~~gg~~Rm~~p~~I~aIk~~V~iPVigk~Righ~~Ea~~L~~~GvDiI--D~  102 (293)
T PRK04180         26 NAE-QAKIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIEEIMDAVSIPVMAKARIGHFVEAQILEALGVDYI--DE  102 (293)
T ss_pred             CHH-HHHHHHHhChHHHHHccCCCchHhhcCCeeecCCHHHHHHHHHhCCCCeEEeehhhHHHHHHHHHHcCCCEE--ec
Confidence            454 778778889887665     2221  11  124555555554 6899998655554 689999999999988  33


Q ss_pred             eeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEe---------
Q 021156          163 YVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVH---------  233 (316)
Q Consensus       163 ~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvt---------  233 (316)
                      +.+.+|  ..+++..+.+.|   .+.+..|++                    .++.+.+..+.|++.|=-|         
T Consensus       103 Te~lrp--ad~~~~~~K~~f---~~~fmad~~--------------------~l~EAlrai~~GadmI~Ttge~gtg~v~  157 (293)
T PRK04180        103 SEVLTP--ADEEYHIDKWDF---TVPFVCGAR--------------------NLGEALRRIAEGAAMIRTKGEAGTGNVV  157 (293)
T ss_pred             cCCCCc--hHHHHHHHHHHc---CCCEEccCC--------------------CHHHHHHHHHCCCCeeeccCCCCCccHH
Confidence            333331  136777887878   345666664                    1355666666777755333         


Q ss_pred             -----------------ecCCcc--c---cCCCCHHHHHHHhhcCCCcEE--EEeCCCCHHHHHHHHHhCCCcCEEEEcc
Q 021156          234 -----------------GVDVEG--K---KLGIDDELVALLGKYSPIPVT--YAGGVTTMADLEKIKVAGIGRVDVTVGS  289 (316)
Q Consensus       234 -----------------di~~dG--~---~~G~d~eli~~l~~~~~iPVI--asGGI~s~eDi~~l~~~G~g~~gVivG~  289 (316)
                                       ..+.+.  +   ..++|+++++++++..++||+  +.|||.+++|+..+++.|  +++|+||+
T Consensus       158 ~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vme~G--AdgVaVGS  235 (293)
T PRK04180        158 EAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAELGRLPVVNFAAGGIATPADAALMMQLG--ADGVFVGS  235 (293)
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHHHhC--CCEEEEcH
Confidence                             111111  1   257899999999998899998  999999999999999998  99999999


Q ss_pred             ch
Q 021156          290 AL  291 (316)
Q Consensus       290 Al  291 (316)
                      ++
T Consensus       236 aI  237 (293)
T PRK04180        236 GI  237 (293)
T ss_pred             Hh
Confidence            99

>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type

Probab=99.05  E-value=2.5e-09  Score=98.31  Aligned_cols=111  Identities=13%  Similarity=0.035  Sum_probs=89.0

Q ss_pred             eEEEeeeeeecCCeeEEEeCCccee--------c---ccCH-HHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHh
Q 021156          186 RLVLDLSCRKKDGKYAIVTDRWQKF--------S---DVYL-DERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLG  253 (316)
Q Consensus       186 ~IvvslD~k~~~g~~~v~~~gw~~~--------~---~~~~-~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~  253 (316)
                      +.+++||++  +|+ .|+...+...        +   ..++ .+.|+.+.+.|++.+  |-+|.   ... |.++++++.
T Consensus         2 ~~iPAIDl~--~Gk-~VrL~qG~~~~~~~~~~~~~~y~~~pp~~~A~~~~~~Ga~~l--HvVDL---g~~-n~~~i~~i~   72 (253)
T TIGR02129         2 KFRPCIDIH--NGK-VKQIVGGTLTSKKGSVLKTNFVSDKPSSYYAKLYKDDGVKGC--HVIML---GPN-NDDAAKEAL   72 (253)
T ss_pred             ceEeEEEee--CCE-EEEeeCcCccccccCCcceEEecCCCHHHHHHHHHHcCCCEE--EEEEC---CCC-cHHHHHHHH
Confidence            468999998  887 8887665422        1   2346 999999999999976  55555   233 999999999


Q ss_pred             hcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCc-ccHHHHHHHHHhh
Q 021156          254 KYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGN-LAYKDVVAWHAQQ  310 (316)
Q Consensus       254 ~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~-~~~~~~~~~~~~~  310 (316)
                      +.+++||.++|||++ +++++++++|  ++.|++|+++  +.++ +..+.+.++.+.+
T Consensus        73 ~~~~~~v~vGGGIr~-e~v~~~l~aG--a~rVvIGS~a--v~~~~i~~~~~~~i~~~f  125 (253)
T TIGR02129        73 HAYPGGLQVGGGIND-TNAQEWLDEG--ASHVIVTSWL--FTKGKFDLKRLKEIVSLV  125 (253)
T ss_pred             HhCCCCEEEeCCcCH-HHHHHHHHcC--CCEEEECcHH--HhCCCCCHHHHHHHHHHh
Confidence            999999999999998 9999999999  9999999999  8874 4555666666665

This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.

>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure

Probab=99.03  E-value=2e-08  Score=86.77  Aligned_cols=174  Identities=23%  Similarity=0.172  Sum_probs=119.3

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCcc-c--H--HHHHHHHHhCCCcEEEecCCC-HHH-H----HHHHHcCCCEEEeCC
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADPL-S--K--AAAIEALHAYPGGLQVGGGIN-SDN-S----LSYIEEGATHVIVTS  162 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~~-~--~--~~i~~~v~~~~~pl~vGGGIr-~e~-~----~~~l~~Gad~VVigt  162 (316)
                      ++.+.++.+.+.|+..+++...+.... +  .  ..+....+..++|+.+...++ ..+ .    +.+.++|+|.|.++.
T Consensus        13 ~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l~~   92 (200)
T cd04722          13 DPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIHG   92 (200)
T ss_pred             HHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHHHHcCCCEEEEec
Confidence            678899999999999888888775421 1  1  124444456788999998886 333 3    478899999999987


Q ss_pred             eeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccC
Q 021156          163 YVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKL  242 (316)
Q Consensus       163 ~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~  242 (316)
                      .....++..++.++++.+.++.-.+.+.+...   .          +   ..   .+ .+.+.|++.+.++.....+...
T Consensus        93 ~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~---~----------~---~~---~~-~~~~~g~d~i~~~~~~~~~~~~  152 (200)
T cd04722          93 AVGYLAREDLELIRELREAVPDVKVVVKLSPT---G----------E---LA---AA-AAEEAGVDEVGLGNGGGGGGGR  152 (200)
T ss_pred             cCCcHHHHHHHHHHHHHHhcCCceEEEEECCC---C----------c---cc---hh-hHHHcCCCEEEEcCCcCCCCCc
Confidence            76431011156777777766222333333221   0          0   00   11 1678899999888876655555


Q ss_pred             CCCH---HHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEcc
Q 021156          243 GIDD---ELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGS  289 (316)
Q Consensus       243 G~d~---eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~  289 (316)
                      ..+.   ..++.+.+..++||+++||+.+.+++.++++.|  ++++++||
T Consensus       153 ~~~~~~~~~~~~~~~~~~~pi~~~GGi~~~~~~~~~~~~G--ad~v~vgs  200 (200)
T cd04722         153 DAVPIADLLLILAKRGSKVPVIAGGGINDPEDAAEALALG--ADGVIVGS  200 (200)
T ss_pred             cCchhHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHhC--CCEEEecC
Confidence            5543   456666667789999999999999999999998  99999996

Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.

>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=98.97  E-value=7.5e-09  Score=97.80  Aligned_cols=153  Identities=16%  Similarity=0.142  Sum_probs=105.4

Q ss_pred             EEEecCCCH---HH-HHHHHHcCCCEEEeCCeeecC------C---CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEE
Q 021156          136 LQVGGGINS---DN-SLSYIEEGATHVIVTSYVFNN------G---QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAI  202 (316)
Q Consensus       136 l~vGGGIr~---e~-~~~~l~~Gad~VVigt~~~~~------~---~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v  202 (316)
                      +++-|+-..   .+ ++.+-+.|||.+-++...-+.      |   ..+|+.+.++.+.. ++.+-+.+-+|.       
T Consensus       104 ~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v-~~~~~~Pv~vKl-------  175 (299)
T cd02940         104 ASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWV-REAVKIPVIAKL-------  175 (299)
T ss_pred             EEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHH-HHhcCCCeEEEC-------
Confidence            566665332   22 455555799988775443221      1   02588999988877 333333444442       


Q ss_pred             EeCCcceecccCHHHHHHHHHHcCCCEEEEee---------------------cCCccccCCC-C----HHHHHHHhhcC
Q 021156          203 VTDRWQKFSDVYLDERVLDFLASYADEFLVHG---------------------VDVEGKKLGI-D----DELVALLGKYS  256 (316)
Q Consensus       203 ~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtd---------------------i~~dG~~~G~-d----~eli~~l~~~~  256 (316)
                        .-.   . .++.++++.+++.|++.+++++                     .+..|.++|+ +    |+.+.++++.+
T Consensus       176 --~~~---~-~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~  249 (299)
T cd02940         176 --TPN---I-TDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAP  249 (299)
T ss_pred             --CCC---c-hhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhc
Confidence              211   1 1577899999999999987532                     2233455665 4    78999999888


Q ss_pred             --CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156          257 --PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVA  305 (316)
Q Consensus       257 --~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~  305 (316)
                        ++|||++|||.+.+|+.+.+.+|  +++|+|||++ .++|+-.+.++.+
T Consensus       250 ~~~ipIig~GGI~~~~da~~~l~aG--A~~V~i~ta~-~~~g~~~~~~i~~  297 (299)
T cd02940         250 EPGLPISGIGGIESWEDAAEFLLLG--ASVVQVCTAV-MNQGFTIVDDMCT  297 (299)
T ss_pred             CCCCcEEEECCCCCHHHHHHHHHcC--CChheEceee-cccCCcHHHHHhh
Confidence              89999999999999999999988  9999999998 2448877777653

DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.

>TIGR00734 hisAF_rel hisA/hisF family protein

Probab=98.97  E-value=6.9e-09  Score=94.04  Aligned_cols=110  Identities=16%  Similarity=0.121  Sum_probs=86.0

Q ss_pred             eEEEeeeeeecCCeeEEEeCCcce-e---------cccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhc
Q 021156          186 RLVLDLSCRKKDGKYAIVTDRWQK-F---------SDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKY  255 (316)
Q Consensus       186 ~IvvslD~k~~~g~~~v~~~gw~~-~---------~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~  255 (316)
                      +|++++|++  +|+ .|+..++.. .         ..-+|.+.++.+.+.|++++.+.|++.. ...+.|+++++++++.
T Consensus         2 ~iIP~iDl~--~g~-~Vr~~~G~~~~~~~~~~~~~~~~dP~~~a~~~~~~g~~~l~ivDLd~~-~~~~~n~~~i~~i~~~   77 (221)
T TIGR00734         2 KIIPVIDLK--DGI-AVAGKSGERESYPPLESVSRLSSSPDDAAKVIEEIGARFIYIADLDRI-VGLGDNFSLLSKLSKR   77 (221)
T ss_pred             EEEEEEEee--CCE-EEEccccCcccccccccceecCCCHHHHHHHHHHcCCCEEEEEEcccc-cCCcchHHHHHHHHhh
Confidence            689999998  886 777765331 1         1238999999999999999988887664 2456699999999886


Q ss_pred             CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHH
Q 021156          256 SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDV  303 (316)
Q Consensus       256 ~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~  303 (316)
                        +|+.++|||+|.+|+++++..-.+++.|++|++.  ++++-.++++
T Consensus        78 --~~v~vgGGirs~e~~~~~~~~l~~a~rvvigT~a--~~~p~~l~~~  121 (221)
T TIGR00734        78 --VELIADCGVRSPEDLETLPFTLEFASRVVVATET--LDITELLREC  121 (221)
T ss_pred             --CcEEEcCccCCHHHHHHHHhhhccceEEeecChh--hCCHHHHHHh
Confidence              4999999999999999998731138999999999  8865444433

This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.

>PLN02617 imidazole glycerol phosphate synthase hisHF

Probab=98.97  E-value=3.9e-09  Score=106.86  Aligned_cols=109  Identities=17%  Similarity=0.146  Sum_probs=84.5

Q ss_pred             CceEEEeeeeeecC-Cee-EEEeCCc--------ce--ecccCHHHHHHHHHHcCCCEEEEeecCCccc---cCCCCHHH
Q 021156          184 KQRLVLDLSCRKKD-GKY-AIVTDRW--------QK--FSDVYLDERVLDFLASYADEFLVHGVDVEGK---KLGIDDEL  248 (316)
Q Consensus       184 ~~~IvvslD~k~~~-g~~-~v~~~gw--------~~--~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~---~~G~d~el  248 (316)
                      ..||+++||+|.++ |.. .++...+        ..  ..+ ++.++|+.+.+.|++++.+.|++..-.   .+.+++++
T Consensus       227 ~~riip~l~v~~~~~g~~~v~kg~~f~~~~~~~~~~~~~~g-dPve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~  305 (538)
T PLN02617        227 AKRVIACLDVRSNDKGDLVVTKGDQYDVREHSEGREVRNLG-KPVELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEV  305 (538)
T ss_pred             cceEEEEEEeecCCCCceEEeecccccccccccccCCCcCC-CHHHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHH
Confidence            35899999998321 321 2233444        11  122 799999999999999999999986321   23456999


Q ss_pred             HHHHhhcCCCcEEEEeCCCCH-----------HHHHHHHHhCCCcCEEEEccchhhccCc
Q 021156          249 VALLGKYSPIPVTYAGGVTTM-----------ADLEKIKVAGIGRVDVTVGSALDIFGGN  297 (316)
Q Consensus       249 i~~l~~~~~iPVIasGGI~s~-----------eDi~~l~~~G~g~~gVivG~Al~~~~g~  297 (316)
                      ++++++.+.+|+.++|||++.           |+++++++.|  ++.|+||+++  ++++
T Consensus       306 i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~G--adkV~i~s~A--v~~~  361 (538)
T PLN02617        306 LRRASENVFVPLTVGGGIRDFTDANGRYYSSLEVASEYFRSG--ADKISIGSDA--VYAA  361 (538)
T ss_pred             HHHHHhhCCCCEEEcCCccccccccccccchHHHHHHHHHcC--CCEEEEChHH--HhCh
Confidence            999999999999999999998           6699999998  9999999999  8753

>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain

Probab=98.96  E-value=2.7e-08  Score=93.61  Aligned_cols=153  Identities=19%  Similarity=0.167  Sum_probs=107.0

Q ss_pred             CcEEEecCCC--H-HHHHHHHHcCCCEEEeCCe----------eecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCee
Q 021156          134 GGLQVGGGIN--S-DNSLSYIEEGATHVIVTSY----------VFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKY  200 (316)
Q Consensus       134 ~pl~vGGGIr--~-e~~~~~l~~Gad~VVigt~----------~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~  200 (316)
                      +-++++|.-.  . +-++.+.++|+|.|-++..          ...    +++++.++.+.. ++.+-+.+-+|      
T Consensus        92 ~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~----~~~~~~eiv~~v-r~~~~~Pv~vK------  160 (296)
T cd04740          92 VIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGT----DPEAVAEIVKAV-KKATDVPVIVK------  160 (296)
T ss_pred             EEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccC----CHHHHHHHHHHH-HhccCCCEEEE------
Confidence            3356666542  2 3466777789999988432          223    488888888877 34332233332      


Q ss_pred             EEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecC------C----------ccccCCC-----CHHHHHHHhhcCCCc
Q 021156          201 AIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVD------V----------EGKKLGI-----DDELVALLGKYSPIP  259 (316)
Q Consensus       201 ~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~------~----------dG~~~G~-----d~eli~~l~~~~~iP  259 (316)
                         +....    -+..++++.+++.|++.+.+++..      .          .|.+.|+     .+++++++++.+++|
T Consensus       161 ---l~~~~----~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ip  233 (296)
T cd04740         161 ---LTPNV----TDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIP  233 (296)
T ss_pred             ---eCCCc----hhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCC
Confidence               22111    146788999999999988765321      1          0334444     368899998888999


Q ss_pred             EEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHH
Q 021156          260 VTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHA  308 (316)
Q Consensus       260 VIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~  308 (316)
                      ||++|||.+.+|+.++++.|  ++.|++||++  +.+++.++++.+-+.
T Consensus       234 ii~~GGI~~~~da~~~l~~G--Ad~V~igra~--l~~p~~~~~i~~~l~  278 (296)
T cd04740         234 IIGVGGIASGEDALEFLMAG--ASAVQVGTAN--FVDPEAFKEIIEGLE  278 (296)
T ss_pred             EEEECCCCCHHHHHHHHHcC--CCEEEEchhh--hcChHHHHHHHHHHH
Confidence            99999999999999999988  9999999999  889988888766443

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>cd02911 arch_FMN Archeal FMN-binding domain

Probab=98.92  E-value=1.2e-08  Score=93.30  Aligned_cols=107  Identities=18%  Similarity=0.089  Sum_probs=81.8

Q ss_pred             CHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccC--CCCHHH
Q 021156          171 DLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKL--GIDDEL  248 (316)
Q Consensus       171 ~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~--G~d~el  248 (316)
                      +|+.+.++.+..- + .-+.+.+|.+        .+|.    .+..++++.+++.|++.+  |-..   +..  ..||+.
T Consensus       124 ~p~~l~eiv~avr-~-~~~pVsvKir--------~g~~----~~~~~la~~l~~aG~d~i--hv~~---~~~g~~ad~~~  184 (233)
T cd02911         124 DPERLSEFIKALK-E-TGVPVSVKIR--------AGVD----VDDEELARLIEKAGADII--HVDA---MDPGNHADLKK  184 (233)
T ss_pred             CHHHHHHHHHHHH-h-cCCCEEEEEc--------CCcC----cCHHHHHHHHHHhCCCEE--EECc---CCCCCCCcHHH
Confidence            4999999998873 3 2233444321        2453    257899999999999954  5432   233  349999


Q ss_pred             HHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHH
Q 021156          249 VALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVV  304 (316)
Q Consensus       249 i~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~  304 (316)
                      +++++  +++|||++|||.|.+|+.++++.|  +++|++||+.    +||.|+++.
T Consensus       185 I~~i~--~~ipVIgnGgI~s~eda~~~l~~G--aD~VmiGR~~----~p~~~~~~~  232 (233)
T cd02911         185 IRDIS--TELFIIGNNSVTTIESAKEMFSYG--ADMVSVARAS----LPENIEWLV  232 (233)
T ss_pred             HHHhc--CCCEEEEECCcCCHHHHHHHHHcC--CCEEEEcCCC----CchHHHHhh
Confidence            99987  689999999999999999999987  9999999994    889988764

This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.

>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed

Probab=98.91  E-value=7e-08  Score=91.13  Aligned_cols=139  Identities=17%  Similarity=0.142  Sum_probs=99.5

Q ss_pred             HHHHHHcC-CCEEEeC----------CeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCH
Q 021156          147 SLSYIEEG-ATHVIVT----------SYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYL  215 (316)
Q Consensus       147 ~~~~l~~G-ad~VVig----------t~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~  215 (316)
                      ++++-++| +|.|-++          ....+    +++++.++.+.. ++.+-+.+-+|         +....    .+.
T Consensus       110 a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~----~~~~~~eiv~~v-r~~~~~pv~vK---------l~~~~----~~~  171 (301)
T PRK07259        110 AEKLSKAPNVDAIELNISCPNVKHGGMAFGT----DPELAYEVVKAV-KEVVKVPVIVK---------LTPNV----TDI  171 (301)
T ss_pred             HHHHhccCCcCEEEEECCCCCCCCCcccccc----CHHHHHHHHHHH-HHhcCCCEEEE---------cCCCc----hhH
Confidence            66666788 9998773          23333    388888888877 34332333333         22111    156


Q ss_pred             HHHHHHHHHcCCCEEEEeecC------C----------ccccCCC-----CHHHHHHHhhcCCCcEEEEeCCCCHHHHHH
Q 021156          216 DERVLDFLASYADEFLVHGVD------V----------EGKKLGI-----DDELVALLGKYSPIPVTYAGGVTTMADLEK  274 (316)
Q Consensus       216 ~e~a~~~~~~Ga~~ilvtdi~------~----------dG~~~G~-----d~eli~~l~~~~~iPVIasGGI~s~eDi~~  274 (316)
                      .++++.+++.|++.+.+++..      .          .|.+.|+     .+++++++++.+++|||++|||.+.+|+.+
T Consensus       172 ~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~da~~  251 (301)
T PRK07259        172 VEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAEDAIE  251 (301)
T ss_pred             HHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHHHHHH
Confidence            788999999999988764321      1          1223333     578999999888999999999999999999


Q ss_pred             HHHhCCCcCEEEEccchhhccCcccHHHHHHHH
Q 021156          275 IKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWH  307 (316)
Q Consensus       275 l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~  307 (316)
                      ++..|  ++.|++||++  +.++..++++.+-.
T Consensus       252 ~l~aG--Ad~V~igr~l--l~~P~~~~~i~~~l  280 (301)
T PRK07259        252 FIMAG--ASAVQVGTAN--FYDPYAFPKIIEGL  280 (301)
T ss_pred             HHHcC--CCceeEcHHH--hcCcHHHHHHHHHH
Confidence            99988  8999999999  88998887776643

>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=98.86  E-value=3.1e-08  Score=94.44  Aligned_cols=165  Identities=17%  Similarity=0.123  Sum_probs=108.7

Q ss_pred             HHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHhC-CCcEEEecCCC--H---HHHHHHHHcCC--CEEEeCCeeecCC
Q 021156           97 EFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAY-PGGLQVGGGIN--S---DNSLSYIEEGA--THVIVTSYVFNNG  168 (316)
Q Consensus        97 e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~-~~pl~vGGGIr--~---e~~~~~l~~Ga--d~VVigt~~~~~~  168 (316)
                      ++|+..++.|-..+..= +     +.+......+++ +-.+.++.++.  .   +.+.+++++|+  |.++|+++--.. 
T Consensus        52 ~LA~~a~~~G~~~~~~k-~-----~~e~~~~~~r~~~~~~l~v~~~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~-  124 (326)
T PRK05458         52 KIAEWLAENGYFYIMHR-F-----DPEARIPFIKDMHEQGLIASISVGVKDDEYDFVDQLAAEGLTPEYITIDIAHGHS-  124 (326)
T ss_pred             HHHHHHHHcCCEEEEec-C-----CHHHHHHHHHhccccccEEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCch-
Confidence            46776666662221111 1     222222333433 33457777773  2   56889999965  999998876321 


Q ss_pred             CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEee------cCCcccc-
Q 021156          169 QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHG------VDVEGKK-  241 (316)
Q Consensus       169 ~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtd------i~~dG~~-  241 (316)
                      ..-.++++++.+.|+ +..++.-++.                    ..+.++.+.+.|++.+.+..      +++..+. 
T Consensus       125 ~~~~e~I~~ir~~~p-~~~vi~g~V~--------------------t~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~  183 (326)
T PRK05458        125 DSVINMIQHIKKHLP-ETFVIAGNVG--------------------TPEAVRELENAGADATKVGIGPGKVCITKIKTGF  183 (326)
T ss_pred             HHHHHHHHHHHhhCC-CCeEEEEecC--------------------CHHHHHHHHHcCcCEEEECCCCCcccccccccCC
Confidence            112467888888773 4443333431                    24788999999999976531      1221122 


Q ss_pred             CCCCHHH--HHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          242 LGIDDEL--VALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       242 ~G~d~el--i~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      .-+||.+  ++++++.+++|||+.|||++..|+.+++.+|  +++|++|+++
T Consensus       184 ~~~~w~l~ai~~~~~~~~ipVIAdGGI~~~~Di~KaLa~G--A~aV~vG~~~  233 (326)
T PRK05458        184 GTGGWQLAALRWCAKAARKPIIADGGIRTHGDIAKSIRFG--ATMVMIGSLF  233 (326)
T ss_pred             CCCccHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhC--CCEEEechhh
Confidence            2357774  8888887899999999999999999999998  9999999998

>TIGR01163 rpe ribulose-phosphate 3-epimerase

Probab=98.86  E-value=4.3e-07  Score=80.73  Aligned_cols=179  Identities=21%  Similarity=0.195  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHcCCCcceEEEecCCc----ccHHHHHHHHH-hCCCcEEEecCCC-H-HHHHHHHHcCCCEEEeCCeeecC
Q 021156           95 AAEFANLYKEDGLTGGHAIMLGADP----LSKAAAIEALH-AYPGGLQVGGGIN-S-DNSLSYIEEGATHVIVTSYVFNN  167 (316)
Q Consensus        95 p~e~a~~~~~~G~~~l~lvDLda~~----~~~~~i~~~v~-~~~~pl~vGGGIr-~-e~~~~~l~~Gad~VVigt~~~~~  167 (316)
                      ..+.++...+.|++.+|+.-.|+..    .....+.+.++ ..+.|+.++==++ . +.++.+.++|+|.|++--....+
T Consensus        13 ~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~~~~~~   92 (210)
T TIGR01163        13 LGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIITVHPEASEH   92 (210)
T ss_pred             HHHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEccCCchh
Confidence            4467788888899999996455432    12233344444 3456766554444 4 45888889999998885433222


Q ss_pred             CCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHH
Q 021156          168 GQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDE  247 (316)
Q Consensus       168 ~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~e  247 (316)
                          +....+..+.+|. ++.+.++..                   +..+.++.+. .+++.+++..+...++....++.
T Consensus        93 ----~~~~~~~~~~~g~-~~~~~~~~~-------------------t~~e~~~~~~-~~~d~i~~~~~~~g~tg~~~~~~  147 (210)
T TIGR01163        93 ----IHRLLQLIKDLGA-KAGIVLNPA-------------------TPLEFLEYVL-PDVDLVLLMSVNPGFGGQKFIPD  147 (210)
T ss_pred             ----HHHHHHHHHHcCC-cEEEEECCC-------------------CCHHHHHHHH-hhCCEEEEEEEcCCCCcccccHH
Confidence                3223333444553 333444331                   1245555553 46888776655543333334554


Q ss_pred             H---HHHHhhcC-----CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHH
Q 021156          248 L---VALLGKYS-----PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVV  304 (316)
Q Consensus       248 l---i~~l~~~~-----~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~  304 (316)
                      .   ++++++..     ++|+.+.|||+ .+++.++.+.|  ++++++|+++  |.-+ ++++..
T Consensus       148 ~~~~i~~i~~~~~~~~~~~~i~v~GGI~-~env~~l~~~g--ad~iivgsai--~~~~-d~~~~~  206 (210)
T TIGR01163       148 TLEKIREVRKMIDENGLSILIEVDGGVN-DDNARELAEAG--ADILVAGSAI--FGAD-DYKEVI  206 (210)
T ss_pred             HHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHHcC--CCEEEEChHH--hCCC-CHHHHH
Confidence            4   44444433     27999999996 69999999988  9999999999  7544 555544

This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.

>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II

Probab=98.86  E-value=1.2e-07  Score=89.99  Aligned_cols=164  Identities=18%  Similarity=0.141  Sum_probs=110.9

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCCc-ccHHHHHHHHHh-CCCcEEEecCC-C--H-HHHHHHHHcCCCEEEeCCeeec
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGADP-LSKAAAIEALHA-YPGGLQVGGGI-N--S-DNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~~-~~~~~i~~~v~~-~~~pl~vGGGI-r--~-e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      .+|. ++....++|..+  ++...... ......++.+++ .+.|+-++=-. .  . +.++.+++.|++.|.++.   .
T Consensus        23 s~~~-la~avs~aGglG--~l~~~~~~~~~l~~~i~~~~~~t~~pfgvn~~~~~~~~~~~~~~~~~~~v~~v~~~~---g   96 (307)
T TIGR03151        23 ATGS-LAAAVSNAGGLG--IIGAGNAPPDVVRKEIRKVKELTDKPFGVNIMLLSPFVDELVDLVIEEKVPVVTTGA---G   96 (307)
T ss_pred             CCHH-HHHHHHhCCCcc--eeccccCCHHHHHHHHHHHHHhcCCCcEEeeecCCCCHHHHHHHHHhCCCCEEEEcC---C
Confidence            3564 888888888443  22221111 112222333443 45565443322 2  2 446778899999887642   2


Q ss_pred             CCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCcccc-CCCC
Q 021156          167 NGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKK-LGID  245 (316)
Q Consensus       167 ~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~-~G~d  245 (316)
                      +   ..++++++.+ .| -.+  ..++-                    ..+.++.+++.|++.|++|..+..|+. ..++
T Consensus        97 ~---p~~~i~~lk~-~g-~~v--~~~v~--------------------s~~~a~~a~~~GaD~Ivv~g~eagGh~g~~~~  149 (307)
T TIGR03151        97 N---PGKYIPRLKE-NG-VKV--IPVVA--------------------SVALAKRMEKAGADAVIAEGMESGGHIGELTT  149 (307)
T ss_pred             C---cHHHHHHHHH-cC-CEE--EEEcC--------------------CHHHHHHHHHcCCCEEEEECcccCCCCCCCcH
Confidence            2   1346666654 33 122  22331                    246789999999999999999888874 3358


Q ss_pred             HHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          246 DELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       246 ~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      +++++++++.+++|||++|||.+.+|+.+++..|  +++|++|+.+
T Consensus       150 ~~ll~~v~~~~~iPviaaGGI~~~~~~~~al~~G--A~gV~iGt~f  193 (307)
T TIGR03151       150 MALVPQVVDAVSIPVIAAGGIADGRGMAAAFALG--AEAVQMGTRF  193 (307)
T ss_pred             HHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcC--CCEeecchHH
Confidence            9999999998899999999999999999999988  9999999987

This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=98.85  E-value=1.6e-07  Score=94.79  Aligned_cols=175  Identities=17%  Similarity=0.153  Sum_probs=120.2

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCC---cccHHHHHHHHHh---------CCCcEEEecCC--C--H-HHHHHHHHcCC
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGAD---PLSKAAAIEALHA---------YPGGLQVGGGI--N--S-DNSLSYIEEGA  155 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~---~~~~~~i~~~v~~---------~~~pl~vGGGI--r--~-e~~~~~l~~Ga  155 (316)
                      .+..++.+.+.+.+...+-++|=++.   -.....+.+....         -...+.||.-|  +  . |.++.+.++|+
T Consensus       182 ~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~p~~~~~~~d~~~~l~vgaavg~~~~~~~r~~~l~~ag~  261 (505)
T PLN02274        182 IDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGYPKLGKPSVGKDGKLLVGAAIGTRESDKERLEHLVKAGV  261 (505)
T ss_pred             CCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCcCccccccCCCCCEEEEEEEcCCccHHHHHHHHHHcCC
Confidence            34556777788888888888874332   1233344444321         13468888866  3  2 66999999999


Q ss_pred             CEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEe--
Q 021156          156 THVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVH--  233 (316)
Q Consensus       156 d~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvt--  233 (316)
                      |.|+++++-=.+ ..-++.++++.+.|+ +..++.-++                    ...+.++.+.+.|++.|.+.  
T Consensus       262 d~i~iD~~~g~~-~~~~~~i~~ik~~~p-~~~vi~g~v--------------------~t~e~a~~a~~aGaD~i~vg~g  319 (505)
T PLN02274        262 DVVVLDSSQGDS-IYQLEMIKYIKKTYP-ELDVIGGNV--------------------VTMYQAQNLIQAGVDGLRVGMG  319 (505)
T ss_pred             CEEEEeCCCCCc-HHHHHHHHHHHHhCC-CCcEEEecC--------------------CCHHHHHHHHHcCcCEEEECCC
Confidence            999999963111 111378999988884 333333333                    23477899999999988652  


Q ss_pred             ----ecCCccccCC----CCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          234 ----GVDVEGKKLG----IDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       234 ----di~~dG~~~G----~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                          ..++..+..|    ..+..+.++++..++|||+.|||++..|+.+++.+|  +++|++|+++
T Consensus       320 ~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIadGGI~~~~di~kAla~G--A~~V~vGs~~  383 (505)
T PLN02274        320 SGSICTTQEVCAVGRGQATAVYKVASIAAQHGVPVIADGGISNSGHIVKALTLG--ASTVMMGSFL  383 (505)
T ss_pred             CCccccCccccccCCCcccHHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcC--CCEEEEchhh
Confidence                1122222222    255667788777889999999999999999999999  9999999998

>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated

Probab=98.83  E-value=1.7e-07  Score=92.52  Aligned_cols=143  Identities=20%  Similarity=0.154  Sum_probs=100.7

Q ss_pred             HHHHHHcCCCEEEeCCeeec----C--CC---CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHH
Q 021156          147 SLSYIEEGATHVIVTSYVFN----N--GQ---MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDE  217 (316)
Q Consensus       147 ~~~~l~~Gad~VVigt~~~~----~--~~---~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e  217 (316)
                      ++.+-++|+|.+-++...-+    +  |.   .+|+.+.++.+.. ++.+-+.+-+|         +.-.  .  .++.+
T Consensus       119 a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v-~~~~~~Pv~vK---------l~p~--~--~~~~~  184 (420)
T PRK08318        119 APLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWV-KRGSRLPVIVK---------LTPN--I--TDIRE  184 (420)
T ss_pred             HHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHH-HhccCCcEEEE---------cCCC--c--ccHHH
Confidence            45555679999887644322    0  10   2589999999887 34333444444         2211  1  14678


Q ss_pred             HHHHHHHcCCCEEEE---------------------eecCCccccCCCC-----HHHHHHHhhcC---CCcEEEEeCCCC
Q 021156          218 RVLDFLASYADEFLV---------------------HGVDVEGKKLGID-----DELVALLGKYS---PIPVTYAGGVTT  268 (316)
Q Consensus       218 ~a~~~~~~Ga~~ilv---------------------tdi~~dG~~~G~d-----~eli~~l~~~~---~iPVIasGGI~s  268 (316)
                      +++.+++.|++.+++                     |.....|.++|+-     |+.++++.+.+   ++|||++|||.|
T Consensus       185 ~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s  264 (420)
T PRK08318        185 PARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISGIGGIET  264 (420)
T ss_pred             HHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEeecCcCC
Confidence            999999999999873                     1122335566764     78999998876   799999999999


Q ss_pred             HHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHH
Q 021156          269 MADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAW  306 (316)
Q Consensus       269 ~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~  306 (316)
                      .+|+.+.+.+|  +++|+||||+ .++|+-.++++.+-
T Consensus       265 ~~da~e~i~aG--A~~Vqi~ta~-~~~gp~ii~~I~~~  299 (420)
T PRK08318        265 WRDAAEFILLG--AGTVQVCTAA-MQYGFRIVEDMISG  299 (420)
T ss_pred             HHHHHHHHHhC--CChheeeeee-ccCCchhHHHHHHH
Confidence            99999999988  9999999998 24488776666553

>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein

Probab=98.81  E-value=9.5e-08  Score=90.14  Aligned_cols=144  Identities=19%  Similarity=0.165  Sum_probs=98.3

Q ss_pred             HHHHHHc--CCCEEEeCCeeecC---C-C--CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHH
Q 021156          147 SLSYIEE--GATHVIVTSYVFNN---G-Q--MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDER  218 (316)
Q Consensus       147 ~~~~l~~--Gad~VVigt~~~~~---~-~--~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~  218 (316)
                      ++.+-++  ++|.+-++...-..   | .  -+++++.++.++. ++.+-+.+-+|         +....    .+..++
T Consensus       109 a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~v-r~~~~~pv~vK---------i~~~~----~~~~~~  174 (300)
T TIGR01037       109 AEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAV-KDKTDVPVFAK---------LSPNV----TDITEI  174 (300)
T ss_pred             HHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHH-HHhcCCCEEEE---------CCCCh----hhHHHH
Confidence            4444444  38888885432211   1 0  1588888888777 33332233333         22111    146789


Q ss_pred             HHHHHHcCCCEEEEeecC----------------CccccCCCC-----HHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHH
Q 021156          219 VLDFLASYADEFLVHGVD----------------VEGKKLGID-----DELVALLGKYSPIPVTYAGGVTTMADLEKIKV  277 (316)
Q Consensus       219 a~~~~~~Ga~~ilvtdi~----------------~dG~~~G~d-----~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~  277 (316)
                      ++.+++.|++.+.+|...                ..|.+.|+.     ++.++++++.+++|||++|||.+.+|+.+++.
T Consensus       175 a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ipvi~~GGI~s~~da~~~l~  254 (300)
T TIGR01037       175 AKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVDIPIIGVGGITSFEDALEFLM  254 (300)
T ss_pred             HHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHH
Confidence            999999999999876321                113345552     47888888888999999999999999999999


Q ss_pred             hCCCcCEEEEccchhhccCcccHHHHHHHHH
Q 021156          278 AGIGRVDVTVGSALDIFGGNLAYKDVVAWHA  308 (316)
Q Consensus       278 ~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~  308 (316)
                      .|  +++|++||++  +.+++.+.++.+-+.
T Consensus       255 ~G--Ad~V~igr~~--l~~p~~~~~i~~~l~  281 (300)
T TIGR01037       255 AG--ASAVQVGTAV--YYRGFAFKKIIEGLI  281 (300)
T ss_pred             cC--CCceeecHHH--hcCchHHHHHHHHHH
Confidence            87  9999999999  888887777766443

This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.

>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites

Probab=98.77  E-value=2.3e-07  Score=84.09  Aligned_cols=131  Identities=19%  Similarity=0.140  Sum_probs=92.6

Q ss_pred             HHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHH
Q 021156          145 DNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLA  224 (316)
Q Consensus       145 e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~  224 (316)
                      +.++.+.++|++.|.++..  ..    ++.++++.+ ++ -.+++.+                      ...+.++.+.+
T Consensus        71 ~~~~~~~~~g~d~v~l~~~--~~----~~~~~~~~~-~~-i~~i~~v----------------------~~~~~~~~~~~  120 (236)
T cd04730          71 ALLEVALEEGVPVVSFSFG--PP----AEVVERLKA-AG-IKVIPTV----------------------TSVEEARKAEA  120 (236)
T ss_pred             HHHHHHHhCCCCEEEEcCC--CC----HHHHHHHHH-cC-CEEEEeC----------------------CCHHHHHHHHH
Confidence            4688889999999999865  32    566655543 32 1222221                      11256777888


Q ss_pred             cCCCEEEEeecCCccccCC---CCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCc--cc
Q 021156          225 SYADEFLVHGVDVEGKKLG---IDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGN--LA  299 (316)
Q Consensus       225 ~Ga~~ilvtdi~~dG~~~G---~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~--~~  299 (316)
                      .|++.++++.....|....   .++++++++++.+++||+++|||++.+|+.++++.|  +++|++|+++  ..-.  -.
T Consensus       121 ~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~~~~~v~~~l~~G--adgV~vgS~l--~~~~e~~~  196 (236)
T cd04730         121 AGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGIADGRGIAAALALG--ADGVQMGTRF--LATEESGA  196 (236)
T ss_pred             cCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcC--CcEEEEchhh--hcCcccCC
Confidence            9999998887755454433   357799999888899999999999999999999988  9999999999  4322  22


Q ss_pred             HHHHHHHHHh
Q 021156          300 YKDVVAWHAQ  309 (316)
Q Consensus       300 ~~~~~~~~~~  309 (316)
                      ..++++.+.+
T Consensus       197 ~~~~~~~~~~  206 (236)
T cd04730         197 SPAYKQALLA  206 (236)
T ss_pred             CHHHHHHHHc
Confidence            3455554444

NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=98.75  E-value=8.1e-08  Score=89.97  Aligned_cols=144  Identities=19%  Similarity=0.156  Sum_probs=98.9

Q ss_pred             HHHHHHHHcCCCEEEeCCeeecCC-----CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHH
Q 021156          145 DNSLSYIEEGATHVIVTSYVFNNG-----QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERV  219 (316)
Q Consensus       145 e~~~~~l~~Gad~VVigt~~~~~~-----~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a  219 (316)
                      +.++.+.++|+|.+-++...-+.+     ..+++.+.++.+... +.+-+.+-+|         +....+  .-+..+++
T Consensus       115 ~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr-~~~~~pv~vK---------l~~~~~--~~~~~~~a  182 (289)
T cd02810         115 ELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVK-AAVDIPLLVK---------LSPYFD--LEDIVELA  182 (289)
T ss_pred             HHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHH-HccCCCEEEE---------eCCCCC--HHHHHHHH
Confidence            447777788999988864422110     114788888877773 3321223222         222111  11467889


Q ss_pred             HHHHHcCCCEEEEeecCCc----------------cccCCC-----CHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHH
Q 021156          220 LDFLASYADEFLVHGVDVE----------------GKKLGI-----DDELVALLGKYS--PIPVTYAGGVTTMADLEKIK  276 (316)
Q Consensus       220 ~~~~~~Ga~~ilvtdi~~d----------------G~~~G~-----d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~  276 (316)
                      +.+.+.|++.+.++.....                |.+.|+     .++.++++++.+  ++|||++|||.+.+|+.+++
T Consensus       183 ~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l  262 (289)
T cd02810         183 KAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSGEDVLEML  262 (289)
T ss_pred             HHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHH
Confidence            9999999999987653221                112232     467888998877  89999999999999999999


Q ss_pred             HhCCCcCEEEEccchhhccC-cccHHHHH
Q 021156          277 VAGIGRVDVTVGSALDIFGG-NLAYKDVV  304 (316)
Q Consensus       277 ~~G~g~~gVivG~Al~~~~g-~~~~~~~~  304 (316)
                      ..|  +++|++|+++  +.+ +..+.++.
T Consensus       263 ~~G--Ad~V~vg~a~--~~~GP~~~~~i~  287 (289)
T cd02810         263 MAG--ASAVQVATAL--MWDGPDVIRKIK  287 (289)
T ss_pred             HcC--ccHheEcHHH--HhcCccHHHHHh
Confidence            988  9999999999  665 88877764

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of

>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed

Probab=98.75  E-value=9.8e-07  Score=78.53  Aligned_cols=172  Identities=22%  Similarity=0.133  Sum_probs=112.6

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCcc-cHHH---HHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCC
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADPL-SKAA---AIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQ  169 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~~-~~~~---i~~~v~~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~  169 (316)
                      +..+.++...+.|++.+|+-.-|.... ....   +.+.+...++++++-     +.++.+.++|++.|.++.....   
T Consensus        22 ~~~~~~~~~~~~gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~a~~~gad~vh~~~~~~~---   93 (212)
T PRK00043         22 DLLEVVEAALEGGVTLVQLREKGLDTRERLELARALKELCRRYGVPLIVN-----DRVDLALAVGADGVHLGQDDLP---   93 (212)
T ss_pred             cHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCeEEEe-----ChHHHHHHcCCCEEecCcccCC---
Confidence            456677777788999988876554321 1111   222233456777763     5688889999999988765322   


Q ss_pred             CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCC----C
Q 021156          170 MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGI----D  245 (316)
Q Consensus       170 ~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~----d  245 (316)
                        ...+..+   .+ ....+++.+.                   + .+.+.+..+.|++.+.+..+...++..+.    .
T Consensus        94 --~~~~~~~---~~-~~~~~g~~~~-------------------t-~~e~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g  147 (212)
T PRK00043         94 --VADARAL---LG-PDAIIGLSTH-------------------T-LEEAAAALAAGADYVGVGPIFPTPTKKDAKAPQG  147 (212)
T ss_pred             --HHHHHHH---cC-CCCEEEEeCC-------------------C-HHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCC
Confidence              2323222   22 1223444331                   2 23466777889999987665544444332    3


Q ss_pred             HHHHHHHhhcCC-CcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156          246 DELVALLGKYSP-IPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVA  305 (316)
Q Consensus       246 ~eli~~l~~~~~-iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~  305 (316)
                      ++.++++++..+ +||++.||| +.+++.++++.|  ++++++|+++  +... ++.+..+
T Consensus       148 ~~~~~~~~~~~~~~~v~a~GGI-~~~~i~~~~~~G--a~gv~~gs~i--~~~~-d~~~~~~  202 (212)
T PRK00043        148 LEGLREIRAAVGDIPIVAIGGI-TPENAPEVLEAG--ADGVAVVSAI--TGAE-DPEAAAR  202 (212)
T ss_pred             HHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcC--CCEEEEeHHh--hcCC-CHHHHHH
Confidence            889999988776 999999999 689999999998  9999999999  6533 4444443

>PRK06843 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.74  E-value=1.7e-07  Score=91.69  Aligned_cols=132  Identities=18%  Similarity=0.212  Sum_probs=94.5

Q ss_pred             cEEEecCC--CH---HHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcce
Q 021156          135 GLQVGGGI--NS---DNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQK  209 (316)
Q Consensus       135 pl~vGGGI--r~---e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~  209 (316)
                      .+.||..+  +.   +.++.+.++|+|.|+|+++--. ++.-.++++++.+.|+ +..++.=++                
T Consensus       141 ~l~v~aavg~~~~~~~~v~~lv~aGvDvI~iD~a~g~-~~~~~~~v~~ik~~~p-~~~vi~g~V----------------  202 (404)
T PRK06843        141 KLRVGAAVSIDIDTIERVEELVKAHVDILVIDSAHGH-STRIIELVKKIKTKYP-NLDLIAGNI----------------  202 (404)
T ss_pred             CeEEEEEEeCCHHHHHHHHHHHhcCCCEEEEECCCCC-ChhHHHHHHHHHhhCC-CCcEEEEec----------------
Confidence            46677666  42   5799999999999999887643 2223567888887774 332233333                


Q ss_pred             ecccCHHHHHHHHHHcCCCEEEEeecCCcc-------ccCC-CCHHHHHH---HhhcCCCcEEEEeCCCCHHHHHHHHHh
Q 021156          210 FSDVYLDERVLDFLASYADEFLVHGVDVEG-------KKLG-IDDELVAL---LGKYSPIPVTYAGGVTTMADLEKIKVA  278 (316)
Q Consensus       210 ~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG-------~~~G-~d~eli~~---l~~~~~iPVIasGGI~s~eDi~~l~~~  278 (316)
                          ...+.++.+.+.|++.|.+ .+...+       +.-| |++..+..   +.+..++|||+.|||++..|+.+++.+
T Consensus       203 ----~T~e~a~~l~~aGaD~I~v-G~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KALal  277 (404)
T PRK06843        203 ----VTKEAALDLISVGADCLKV-GIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIAA  277 (404)
T ss_pred             ----CCHHHHHHHHHcCCCEEEE-CCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHc
Confidence                2357889999999999864 332211       1123 46776544   444568999999999999999999999


Q ss_pred             CCCcCEEEEccch
Q 021156          279 GIGRVDVTVGSAL  291 (316)
Q Consensus       279 G~g~~gVivG~Al  291 (316)
                      |  +++|++|+++
T Consensus       278 G--A~aVmvGs~~  288 (404)
T PRK06843        278 G--ADSVMIGNLF  288 (404)
T ss_pred             C--CCEEEEccee
Confidence            9  9999999998

>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed

Probab=98.72  E-value=1.7e-06  Score=77.68  Aligned_cols=173  Identities=16%  Similarity=0.185  Sum_probs=119.6

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHhCCCcEEEecCC-C-HHHHHHHHHcCCCEEEeCCeeecCCCC
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAYPGGLQVGGGI-N-SDNSLSYIEEGATHVIVTSYVFNNGQM  170 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~~~pl~vGGGI-r-~e~~~~~l~~Gad~VVigt~~~~~~~~  170 (316)
                      .+..++++...+.|++-+-+.. +. +...+.+.+..++.+.++.+|-|- . .++++.++++||+.++.+..       
T Consensus        22 ~~~~~~~~a~~~gGi~~iEvt~-~~-~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp~~-------   92 (206)
T PRK09140         22 DEALAHVGALIEAGFRAIEIPL-NS-PDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTPNT-------   92 (206)
T ss_pred             HHHHHHHHHHHHCCCCEEEEeC-CC-ccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECCCC-------
Confidence            3566788888888888666663 22 223334545555666678888776 4 59999999999999998764       


Q ss_pred             CHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHH
Q 021156          171 DLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVA  250 (316)
Q Consensus       171 ~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~  250 (316)
                      +++.++.. ...| ..++++  +.                   ++ +.+.+..+.|++.+-+..-      ....++.++
T Consensus        93 ~~~v~~~~-~~~~-~~~~~G--~~-------------------t~-~E~~~A~~~Gad~vk~Fpa------~~~G~~~l~  142 (206)
T PRK09140         93 DPEVIRRA-VALG-MVVMPG--VA-------------------TP-TEAFAALRAGAQALKLFPA------SQLGPAGIK  142 (206)
T ss_pred             CHHHHHHH-HHCC-CcEEcc--cC-------------------CH-HHHHHHHHcCCCEEEECCC------CCCCHHHHH
Confidence            25555443 4443 222233  21                   23 4467788899998865331      123478899


Q ss_pred             HHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHHh
Q 021156          251 LLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       251 ~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~~  309 (316)
                      .+++..  ++|+++.||| +.+++.++++.|  ++++.+++++  +......+++.+.+++
T Consensus       143 ~l~~~~~~~ipvvaiGGI-~~~n~~~~~~aG--a~~vav~s~l--~~~~~~~~~i~~~a~~  198 (206)
T PRK09140        143 ALRAVLPPDVPVFAVGGV-TPENLAPYLAAG--AAGFGLGSAL--YRPGQSAEEVAERARA  198 (206)
T ss_pred             HHHhhcCCCCeEEEECCC-CHHHHHHHHHCC--CeEEEEehHh--cccccChHHHHHHHHH
Confidence            998766  4999999999 889999999998  9999999999  7654555666655554

>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain

Probab=98.68  E-value=4e-07  Score=86.71  Aligned_cols=148  Identities=20%  Similarity=0.144  Sum_probs=102.2

Q ss_pred             HHHHHHHcCCCEEEeCCee--------------ecC---C------CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEE
Q 021156          146 NSLSYIEEGATHVIVTSYV--------------FNN---G------QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAI  202 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~~--------------~~~---~------~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v  202 (316)
                      .++++.++|+|-|=|...-              ++|   |      ++..+.++++.+.+|++ +.+.+++..  .  ..
T Consensus       146 aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d-~~i~vris~--~--~~  220 (327)
T cd02803         146 AARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPD-FPVGVRLSA--D--DF  220 (327)
T ss_pred             HHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCC-ceEEEEech--h--cc
Confidence            4667778999998775431              111   0      12247777777777643 445555431  1  00


Q ss_pred             EeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCcccc---------CCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHH
Q 021156          203 VTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKK---------LGIDDELVALLGKYSPIPVTYAGGVTTMADLE  273 (316)
Q Consensus       203 ~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~---------~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~  273 (316)
                      .-.+|..   .+..++++.+++.|++.+-++........         .+.+++.++.+++.+++||+++||+.+.+++.
T Consensus       221 ~~~g~~~---~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~  297 (327)
T cd02803         221 VPGGLTL---EEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVGGIRDPEVAE  297 (327)
T ss_pred             CCCCCCH---HHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHH
Confidence            0122221   24678899999999998877665443221         24578899999998999999999999999999


Q ss_pred             HHHHhCCCcCEEEEccchhhccCcccHHHHH
Q 021156          274 KIKVAGIGRVDVTVGSALDIFGGNLAYKDVV  304 (316)
Q Consensus       274 ~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~  304 (316)
                      ++++.| +++.|.+||++  +.+|..++++.
T Consensus       298 ~~l~~g-~aD~V~igR~~--ladP~l~~k~~  325 (327)
T cd02803         298 EILAEG-KADLVALGRAL--LADPDLPNKAR  325 (327)
T ss_pred             HHHHCC-CCCeeeecHHH--HhCccHHHHHh
Confidence            999986 59999999999  98886665543

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=98.66  E-value=1.1e-06  Score=87.81  Aligned_cols=184  Identities=16%  Similarity=0.168  Sum_probs=120.4

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCCc---ccHHHHHHHHH------hCCCcEEEecCCC----H-HHHHHHHHcCCCEE
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGADP---LSKAAAIEALH------AYPGGLQVGGGIN----S-DNSLSYIEEGATHV  158 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~~---~~~~~i~~~v~------~~~~pl~vGGGIr----~-e~~~~~l~~Gad~V  158 (316)
                      .+..++.+.+.+.+...+-++|=++.-   .....+.+...      .-+..+.|||-+.    . +.++.+.++|++.+
T Consensus       161 ~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~~~~~~~d~~g~l~V~aav~~~~~~~~r~~~L~~aG~d~I  240 (450)
T TIGR01302       161 IDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRKFPHASKDENGRLIVGAAVGTREFDKERAEALVKAGVDVI  240 (450)
T ss_pred             CcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcccCCcceEeCCCCEEEEEEecCchhHHHHHHHHHHhCCCEE
Confidence            345567777777888888888865431   12233333222      1235788999884    1 56889999999999


Q ss_pred             EeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEee----
Q 021156          159 IVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHG----  234 (316)
Q Consensus       159 Vigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtd----  234 (316)
                      +|.++--.+ +.-.+.++++.+.|+ +..++.=++                    ...+.++.+.+.|++.|.+.-    
T Consensus       241 ~vd~a~g~~-~~~~~~i~~i~~~~~-~~~vi~G~v--------------------~t~~~a~~l~~aGad~i~vg~g~G~  298 (450)
T TIGR01302       241 VIDSSHGHS-IYVIDSIKEIKKTYP-DLDIIAGNV--------------------ATAEQAKALIDAGADGLRVGIGPGS  298 (450)
T ss_pred             EEECCCCcH-hHHHHHHHHHHHhCC-CCCEEEEeC--------------------CCHHHHHHHHHhCCCEEEECCCCCc
Confidence            998854322 112577888888774 222222111                    234788899999999885420    


Q ss_pred             --cCCccccCC-CCHHHHHHHh---hcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHH
Q 021156          235 --VDVEGKKLG-IDDELVALLG---KYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKD  302 (316)
Q Consensus       235 --i~~dG~~~G-~d~eli~~l~---~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~  302 (316)
                        .++.-+.-| |.+..+.+++   +..++|||+.|||++..|+.+++.+|  ++.|++|+++  -.-...+.+
T Consensus       299 ~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~G--A~~V~~G~~~--a~~~e~pg~  368 (450)
T TIGR01302       299 ICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAG--ADAVMLGSLL--AGTTESPGE  368 (450)
T ss_pred             CCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcC--CCEEEECchh--hcCCcCCCc
Confidence              122211223 3566666664   34689999999999999999999999  9999999998  433344433

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>PRK13957 indole-3-glycerol-phosphate synthase; Provisional

Probab=98.65  E-value=4.2e-06  Score=76.90  Aligned_cols=169  Identities=12%  Similarity=0.116  Sum_probs=121.9

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCC--cccHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCC
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGAD--PLSKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQ  169 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~--~~~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~  169 (316)
                      -||.++|+.|.+.|+..+ =|.-|..  ..+.+.+..+.+.+++|+.-=..|- ..++.....+|||-|.+=...+.   
T Consensus        61 ~d~~~~A~~y~~~GA~aI-SVlTe~~~F~Gs~~~l~~v~~~v~~PvL~KDFIid~~QI~ea~~~GADavLLI~~~L~---  136 (247)
T PRK13957         61 YHPVQIAKTYETLGASAI-SVLTDQSYFGGSLEDLKSVSSELKIPVLRKDFILDEIQIREARAFGASAILLIVRILT---  136 (247)
T ss_pred             CCHHHHHHHHHHCCCcEE-EEEcCCCcCCCCHHHHHHHHHhcCCCEEeccccCCHHHHHHHHHcCCCEEEeEHhhCC---
Confidence            489999999999999776 3344433  2344444444446789999999996 68899999999999988777665   


Q ss_pred             CCHHHHHHHHH---HhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCH
Q 021156          170 MDLERLKDLVR---VVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDD  246 (316)
Q Consensus       170 ~~~eli~ei~~---~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~  246 (316)
                        ++.++++.+   .+|       +++-       |-++         ..+.++...+.|++-+-++.++....  ..|.
T Consensus       137 --~~~l~~l~~~a~~lG-------le~L-------VEVh---------~~~El~~a~~~ga~iiGINnRdL~t~--~vd~  189 (247)
T PRK13957        137 --PSQIKSFLKHASSLG-------MDVL-------VEVH---------TEDEAKLALDCGAEIIGINTRDLDTF--QIHQ  189 (247)
T ss_pred             --HHHHHHHHHHHHHcC-------CceE-------EEEC---------CHHHHHHHHhCCCCEEEEeCCCCccc--eECH
Confidence              444555443   344       3331       2111         23456677788999888898887632  3477


Q ss_pred             HHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCc
Q 021156          247 ELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGN  297 (316)
Q Consensus       247 eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~  297 (316)
                      +...++....  +..+|+.+||.+++|+.++.+ +  ++++.||+++  ....
T Consensus       190 ~~~~~L~~~ip~~~~~IsESGI~t~~d~~~l~~-~--~davLvG~~l--m~~~  237 (247)
T PRK13957        190 NLVEEVAAFLPPNIVKVGESGIESRSDLDKFRK-L--VDAALIGTYF--MEKK  237 (247)
T ss_pred             HHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHH-h--CCEEEECHHH--hCCC
Confidence            7777776554  456899999999999999886 3  7999999999  8755

>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE)

Probab=98.65  E-value=4.9e-06  Score=73.81  Aligned_cols=180  Identities=19%  Similarity=0.195  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHcCCCcceEEEecCCc-c---cHHHHHHHHHh-CCCcEEEecCCC-H-HHHHHHHHcCCCEEEeCCeeecC
Q 021156           95 AAEFANLYKEDGLTGGHAIMLGADP-L---SKAAAIEALHA-YPGGLQVGGGIN-S-DNSLSYIEEGATHVIVTSYVFNN  167 (316)
Q Consensus        95 p~e~a~~~~~~G~~~l~lvDLda~~-~---~~~~i~~~v~~-~~~pl~vGGGIr-~-e~~~~~l~~Gad~VVigt~~~~~  167 (316)
                      ..+.++...+.|++.+|+=..|+.. +   ....+.+.+++ ++.|+.+.==+. . +.++.+.++|+|.|.+--.....
T Consensus        14 ~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~~~d~~~~~~~~~~~g~dgv~vh~~~~~~   93 (211)
T cd00429          14 LGEELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHTDLPLDVHLMVENPERYIEAFAKAGADIITFHAEATDH   93 (211)
T ss_pred             HHHHHHHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhhCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEECccchhh
Confidence            4456777778899999995555431 1   11233444443 334444443334 3 55888899999998664332222


Q ss_pred             CCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHH
Q 021156          168 GQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDE  247 (316)
Q Consensus       168 ~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~e  247 (316)
                          +....+..+.+|   +.+.+++.  ..               +..+.++.+... ++.+++..+...++....++.
T Consensus        94 ----~~~~~~~~~~~~---~~~g~~~~--~~---------------~~~~~~~~~~~~-~d~i~~~~~~~g~tg~~~~~~  148 (211)
T cd00429          94 ----LHRTIQLIKELG---MKAGVALN--PG---------------TPVEVLEPYLDE-VDLVLVMSVNPGFGGQKFIPE  148 (211)
T ss_pred             ----HHHHHHHHHHCC---CeEEEEec--CC---------------CCHHHHHHHHhh-CCEEEEEEECCCCCCcccCHH
Confidence                222222223343   33334332  00               123455555433 788877665433333344554


Q ss_pred             ---HHHHHhhcC-----CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156          248 ---LVALLGKYS-----PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVA  305 (316)
Q Consensus       248 ---li~~l~~~~-----~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~  305 (316)
                         .++++++..     ++|+++.|||+. +++.++.+.|  ++++++|+++  ++. -++++..+
T Consensus       149 ~~~~i~~~~~~~~~~~~~~pi~v~GGI~~-env~~~~~~g--ad~iivgsai--~~~-~~~~~~~~  208 (211)
T cd00429         149 VLEKIRKLRELIPENNLNLLIEVDGGINL-ETIPLLAEAG--ADVLVAGSAL--FGS-DDYAEAIK  208 (211)
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEEECCCCH-HHHHHHHHcC--CCEEEECHHH--hCC-CCHHHHHH
Confidence               444444444     489999999996 9999999998  9999999999  743 35544443

This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.

>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain

Probab=98.64  E-value=5.2e-07  Score=85.15  Aligned_cols=158  Identities=16%  Similarity=0.127  Sum_probs=103.7

Q ss_pred             EEEecCCC-H-HHHHHHHHc---CCCEEEeCCeeecC-C--C--CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeC
Q 021156          136 LQVGGGIN-S-DNSLSYIEE---GATHVIVTSYVFNN-G--Q--MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTD  205 (316)
Q Consensus       136 l~vGGGIr-~-e~~~~~l~~---Gad~VVigt~~~~~-~--~--~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~  205 (316)
                      ++++|-.. . +.++++.+.   |||.+-++...-+. +  .  .+|+.+.++.+.. ++.+-+.+-+|..        .
T Consensus        96 vsi~g~~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v-~~~~~iPv~vKl~--------p  166 (294)
T cd04741          96 ISVTGSAEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAV-KAAYSIPVGVKTP--------P  166 (294)
T ss_pred             EECCCCHHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHH-HHhcCCCEEEEeC--------C
Confidence            56666622 2 335555554   69998886653221 0  1  1589999999887 3444344544421        2


Q ss_pred             CcceecccCHHHHHHHHHHc--CCCEEEEee-------cC--Cc----------cccCCC--C---HHHHHHHhhcC--C
Q 021156          206 RWQKFSDVYLDERVLDFLAS--YADEFLVHG-------VD--VE----------GKKLGI--D---DELVALLGKYS--P  257 (316)
Q Consensus       206 gw~~~~~~~~~e~a~~~~~~--Ga~~ilvtd-------i~--~d----------G~~~G~--d---~eli~~l~~~~--~  257 (316)
                      +|..   .++.+.++.+.+.  |++.++.++       ++  +.          |-++|+  .   ++.++++++.+  +
T Consensus       167 ~~~~---~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~  243 (294)
T cd04741         167 YTDP---AQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSE  243 (294)
T ss_pred             CCCH---HHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCC
Confidence            3321   1356777888788  899887421       12  11          111232  2   34567777777  4


Q ss_pred             CcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhc-cCcccHHHHHHHHHh
Q 021156          258 IPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIF-GGNLAYKDVVAWHAQ  309 (316)
Q Consensus       258 iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~-~g~~~~~~~~~~~~~  309 (316)
                      +|||++|||.|.+|+.+.+.+|  +++|+|++++  + +|++.++++.+.+..
T Consensus       244 ipIig~GGI~s~~da~e~l~aG--A~~Vqv~ta~--~~~gp~~~~~i~~~L~~  292 (294)
T cd04741         244 IQIIGVGGVLDGRGAFRMRLAG--ASAVQVGTAL--GKEGPKVFARIEKELED  292 (294)
T ss_pred             CCEEEeCCCCCHHHHHHHHHcC--CCceeEchhh--hhcCchHHHHHHHHHHh
Confidence            9999999999999999999988  9999999999  6 699999998876654

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase

Probab=98.63  E-value=8.2e-07  Score=84.99  Aligned_cols=168  Identities=23%  Similarity=0.218  Sum_probs=106.5

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHhCCCcEEEecCC--C--H-HHHHHHHHcCCCEEEeCCeeecCC
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAYPGGLQVGGGI--N--S-DNSLSYIEEGATHVIVTSYVFNNG  168 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~~~pl~vGGGI--r--~-e~~~~~l~~Gad~VVigt~~~~~~  168 (316)
                      +| ++|...+++|..++  +-..  . ..+...+.++++..++.++..+  +  . +.++.++++|++.+++.++.-.. 
T Consensus        47 ~~-~ma~ava~~GglGv--i~~~--~-~~~~~~~~i~~vk~~l~v~~~~~~~~~~~~~~~~l~eagv~~I~vd~~~G~~-  119 (325)
T cd00381          47 ES-EMAIAMARLGGIGV--IHRN--M-SIEEQAEEVRKVKGRLLVGAAVGTREDDKERAEALVEAGVDVIVIDSAHGHS-  119 (325)
T ss_pred             cH-HHHHHHHHCCCEEE--EeCC--C-CHHHHHHHHHHhccCceEEEecCCChhHHHHHHHHHhcCCCEEEEECCCCCc-
Confidence            45 48888888874332  2211  1 2233344444444445555544  3  2 56889999999999987754221 


Q ss_pred             CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEee------cCCccccC
Q 021156          169 QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHG------VDVEGKKL  242 (316)
Q Consensus       169 ~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtd------i~~dG~~~  242 (316)
                      +...+.++++.+.++ +..++.=+                    +...+.++.+.+.|++.|.++-      .++.-+..
T Consensus       120 ~~~~~~i~~ik~~~p-~v~Vi~G~--------------------v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~  178 (325)
T cd00381         120 VYVIEMIKFIKKKYP-NVDVIAGN--------------------VVTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGV  178 (325)
T ss_pred             HHHHHHHHHHHHHCC-CceEEECC--------------------CCCHHHHHHHHhcCCCEEEECCCCCcCcccceeCCC
Confidence            111456667766552 21111101                    1234788999999999987631      11111112


Q ss_pred             C-CCHHHHHHHhhcC---CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          243 G-IDDELVALLGKYS---PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       243 G-~d~eli~~l~~~~---~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      | +++.++..+.+..   ++|||++|||.+..|+.+++.+|  +++|++|+.+
T Consensus       179 g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~G--A~~VmiGt~f  229 (325)
T cd00381         179 GVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAG--ADAVMLGSLL  229 (325)
T ss_pred             CCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcC--CCEEEecchh
Confidence            3 4777777776543   69999999999999999999998  9999999987

IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.

>PRK07695 transcriptional regulator TenI; Provisional

Probab=98.62  E-value=6.4e-06  Score=73.29  Aligned_cols=156  Identities=16%  Similarity=0.048  Sum_probs=101.7

Q ss_pred             HHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHhCCC---cEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHH
Q 021156           97 EFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAYPG---GLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLE  173 (316)
Q Consensus        97 e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~~~---pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~e  173 (316)
                      +.+. ..+.|++.+++=+=+..........+.+.+...   ++++-     ++.+-++..|++.|=++.....       
T Consensus        19 ~~~~-~~~~g~~~iqlR~k~~~~~~~~~~~~~l~~~~~~~~~liin-----~~~~la~~~~~~gvHl~~~~~~-------   85 (201)
T PRK07695         19 AVAM-QIHSEVDYIHIREREKSAKELYEGVESLLKKGVPASKLIIN-----DRVDIALLLNIHRVQLGYRSFS-------   85 (201)
T ss_pred             HHHH-HHhCCCCEEEEcCCCCCHHHHHHHHHHHHHhCCCCCeEEEE-----CHHHHHHHcCCCEEEeCcccCC-------
Confidence            3444 445678877776544332222223333333222   24433     3577788889999988764322       


Q ss_pred             HHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCcccc---CCCCHHHHH
Q 021156          174 RLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKK---LGIDDELVA  250 (316)
Q Consensus       174 li~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~---~G~d~eli~  250 (316)
                       ++++.+.++ +. .+++.+.                   + .+.++++.+.|++.+++..+....+.   .+.+++.++
T Consensus        86 -~~~~r~~~~-~~-~ig~s~~-------------------s-~e~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~  142 (201)
T PRK07695         86 -VRSVREKFP-YL-HVGYSVH-------------------S-LEEAIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELS  142 (201)
T ss_pred             -HHHHHHhCC-CC-EEEEeCC-------------------C-HHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHH
Confidence             344445553 32 2344332                   1 34578888999999876444433333   234789999


Q ss_pred             HHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          251 LLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       251 ~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      ++.+.+++||++.||| +.+++.++.+.|  +++|.+|+++
T Consensus       143 ~~~~~~~ipvia~GGI-~~~~~~~~~~~G--a~gvav~s~i  180 (201)
T PRK07695        143 DIARALSIPVIAIGGI-TPENTRDVLAAG--VSGIAVMSGI  180 (201)
T ss_pred             HHHHhCCCCEEEEcCC-CHHHHHHHHHcC--CCEEEEEHHH
Confidence            9988889999999999 999999999988  9999999999

>PRK08883 ribulose-phosphate 3-epimerase; Provisional

Probab=98.61  E-value=9.6e-06  Score=73.51  Aligned_cols=184  Identities=18%  Similarity=0.154  Sum_probs=120.9

Q ss_pred             CHHH---HHHHHHHcCCCcceEEEecCCc-cc---HHHHHHHHHh--CCCcEEEecCC-CHHH-HHHHHHcCCCEEEeCC
Q 021156           94 SAAE---FANLYKEDGLTGGHAIMLGADP-LS---KAAAIEALHA--YPGGLQVGGGI-NSDN-SLSYIEEGATHVIVTS  162 (316)
Q Consensus        94 ~p~e---~a~~~~~~G~~~l~lvDLda~~-~~---~~~i~~~v~~--~~~pl~vGGGI-r~e~-~~~~l~~Gad~VVigt  162 (316)
                      |+..   -.+.+.+.|++++|+==+|+.. +|   -+.+++.+++  .+.|+.|===+ +.+. ++.+.++||+.+.+-.
T Consensus        10 d~~~l~~~i~~l~~~g~~~lH~DvmDG~Fvpn~tfg~~~i~~i~~~~~~~~~dvHLMv~~p~~~i~~~~~~gad~i~~H~   89 (220)
T PRK08883         10 DFARLGEDVEKVLAAGADVVHFDVMDNHYVPNLTFGAPICKALRDYGITAPIDVHLMVKPVDRIIPDFAKAGASMITFHV   89 (220)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEecccCcccCccccCHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEcc
Confidence            5554   4455566799999998888763 22   3345566654  35554333223 3544 8889999999999988


Q ss_pred             eeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccC
Q 021156          163 YVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKL  242 (316)
Q Consensus       163 ~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~  242 (316)
                      ++..+    +..+-+..+..| -+.-+++.-.                   .+.+..+.+.+ -++.+++..++..-..+
T Consensus        90 Ea~~~----~~~~l~~ik~~g-~k~GlalnP~-------------------Tp~~~i~~~l~-~~D~vlvMtV~PGfgGq  144 (220)
T PRK08883         90 EASEH----VDRTLQLIKEHG-CQAGVVLNPA-------------------TPLHHLEYIMD-KVDLILLMSVNPGFGGQ  144 (220)
T ss_pred             cCccc----HHHHHHHHHHcC-CcEEEEeCCC-------------------CCHHHHHHHHH-hCCeEEEEEecCCCCCc
Confidence            87665    654445556666 3444555432                   23455555655 48999988886643333


Q ss_pred             CC---CHHHHHHHhhcC-----CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHH
Q 021156          243 GI---DDELVALLGKYS-----PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHA  308 (316)
Q Consensus       243 G~---d~eli~~l~~~~-----~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~  308 (316)
                      .+   .++.++++++..     ++|+.+-|||. .+.+.++.+.|  ++++++|+++  |... ++++..+..+
T Consensus       145 ~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~~aG--Ad~vVvGSaI--f~~~-d~~~~i~~l~  212 (220)
T PRK08883        145 SFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIAEAG--ADMFVAGSAI--FGQP-DYKAVIDEMR  212 (220)
T ss_pred             eecHhHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcC--CCEEEEeHHH--hCCC-CHHHHHHHHH
Confidence            34   445666665543     38999999999 89999999998  9999999999  6433 4555544443

>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins

Probab=98.61  E-value=2.5e-06  Score=81.70  Aligned_cols=141  Identities=20%  Similarity=0.187  Sum_probs=93.5

Q ss_pred             HHHHHHcCCCEEEeCCeeec-CCC----CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHH
Q 021156          147 SLSYIEEGATHVIVTSYVFN-NGQ----MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLD  221 (316)
Q Consensus       147 ~~~~l~~Gad~VVigt~~~~-~~~----~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~  221 (316)
                      ++.+-++|+|.+-++..... ++.    ..++.+.++.+.+ ++.+-+.+-+|         .....    .+..++++.
T Consensus       118 a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v-~~~~~iPv~vK---------l~p~~----~~~~~~a~~  183 (325)
T cd04739         118 ARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAV-KSAVTIPVAVK---------LSPFF----SALAHMAKQ  183 (325)
T ss_pred             HHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHH-HhccCCCEEEE---------cCCCc----cCHHHHHHH
Confidence            55555689999988775422 111    1124556666655 23222333333         22211    157789999


Q ss_pred             HHHcCCCEEEEeecC------C-------ccccCCC-----CHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcC
Q 021156          222 FLASYADEFLVHGVD------V-------EGKKLGI-----DDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRV  283 (316)
Q Consensus       222 ~~~~Ga~~ilvtdi~------~-------dG~~~G~-----d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~  283 (316)
                      +++.|++.+.+|...      .       .+.++|+     -+++++++.+.+++|||++|||.|.+|+.+.+.+|  ++
T Consensus       184 l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~ipIig~GGI~s~~Da~e~l~aG--A~  261 (325)
T cd04739         184 LDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKASLAASGGVHDAEDVVKYLLAG--AD  261 (325)
T ss_pred             HHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCCCEEEECCCCCHHHHHHHHHcC--CC
Confidence            999999999887643      1       1122333     24667788877899999999999999999999988  99


Q ss_pred             EEEEccchhhcc-CcccHHHHHH
Q 021156          284 DVTVGSALDIFG-GNLAYKDVVA  305 (316)
Q Consensus       284 gVivG~Al~~~~-g~~~~~~~~~  305 (316)
                      .|.||+++  +. |+-.+.++.+
T Consensus       262 ~Vqv~ta~--~~~gp~~~~~i~~  282 (325)
T cd04739         262 VVMTTSAL--LRHGPDYIGTLLA  282 (325)
T ss_pred             eeEEehhh--hhcCchHHHHHHH
Confidence            99999999  55 6755555444

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.

>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI

Probab=98.61  E-value=5.7e-06  Score=72.05  Aligned_cols=164  Identities=23%  Similarity=0.172  Sum_probs=107.0

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHH----HhCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCC
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEAL----HAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQ  169 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v----~~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~  169 (316)
                      +..+..+.+.+.|++.+|+=+-+..........+.+    ...++++.+-     +.++.+.++|++.+-+......   
T Consensus        13 ~~~~~l~~l~~~g~~~i~lr~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~-----~~~~~a~~~g~~~vh~~~~~~~---   84 (196)
T cd00564          13 DLLEVVEAALKGGVTLVQLREKDLSARELLELARALRELCRKYGVPLIIN-----DRVDLALAVGADGVHLGQDDLP---   84 (196)
T ss_pred             hHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCeEEEe-----ChHHHHHHcCCCEEecCcccCC---
Confidence            456777777788999988877665432222222222    2345666653     3577788999997766653221   


Q ss_pred             CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCcccc----CCCC
Q 021156          170 MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKK----LGID  245 (316)
Q Consensus       170 ~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~----~G~d  245 (316)
                        ...+.++   .+ ....+++.+.                   ++ +.+.++.+.|++.+.+..+...+..    ....
T Consensus        85 --~~~~~~~---~~-~~~~~g~~~~-------------------t~-~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~  138 (196)
T cd00564          85 --VAEARAL---LG-PDLIIGVSTH-------------------SL-EEALRAEELGADYVGFGPVFPTPTKPGAGPPLG  138 (196)
T ss_pred             --HHHHHHH---cC-CCCEEEeeCC-------------------CH-HHHHHHhhcCCCEEEECCccCCCCCCCCCCCCC
Confidence              3333333   22 1223333321                   12 4567788889999887655332222    2347


Q ss_pred             HHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccC
Q 021156          246 DELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGG  296 (316)
Q Consensus       246 ~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g  296 (316)
                      ++.++++++..++||++.|||. .+++.++.+.|  ++++++|+++  +..
T Consensus       139 ~~~~~~~~~~~~~pv~a~GGi~-~~~i~~~~~~G--a~~i~~g~~i--~~~  184 (196)
T cd00564         139 LELLREIAELVEIPVVAIGGIT-PENAAEVLAAG--ADGVAVISAI--TGA  184 (196)
T ss_pred             HHHHHHHHHhCCCCEEEECCCC-HHHHHHHHHcC--CCEEEEehHh--hcC
Confidence            8899999887889999999995 69999999998  9999999999  643

TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.

>cd00452 KDPG_aldolase KDPG and KHG aldolase

Probab=98.60  E-value=2.4e-06  Score=75.47  Aligned_cols=157  Identities=20%  Similarity=0.252  Sum_probs=107.6

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHH-hCCCcEEEecCC-C-HHHHHHHHHcCCCEEEeCCeeecCCC
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALH-AYPGGLQVGGGI-N-SDNSLSYIEEGATHVIVTSYVFNNGQ  169 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~-~~~~pl~vGGGI-r-~e~~~~~l~~Gad~VVigt~~~~~~~  169 (316)
                      .+..++++.+.+.|++.+.+-. .  ..+....++.++ ..+ .+.+|+|- - .++++.+.++||+.++.+..   +  
T Consensus        16 ~~~~~~~~~l~~~G~~~vev~~-~--~~~~~~~i~~l~~~~~-~~~iGag~v~~~~~~~~a~~~Ga~~i~~p~~---~--   86 (190)
T cd00452          16 EDALALAEALIEGGIRAIEITL-R--TPGALEAIRALRKEFP-EALIGAGTVLTPEQADAAIAAGAQFIVSPGL---D--   86 (190)
T ss_pred             HHHHHHHHHHHHCCCCEEEEeC-C--ChhHHHHHHHHHHHCC-CCEEEEEeCCCHHHHHHHHHcCCCEEEcCCC---C--
Confidence            3566788888888888655442 2  222334445554 444 26677766 3 58899999999999987643   2  


Q ss_pred             CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHH
Q 021156          170 MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELV  249 (316)
Q Consensus       170 ~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli  249 (316)
                        ++.++. .+.++ ..+++.+.                     ++ +.+.++.+.|++.+-+...+   .   ...+.+
T Consensus        87 --~~~~~~-~~~~~-~~~i~gv~---------------------t~-~e~~~A~~~Gad~i~~~p~~---~---~g~~~~  134 (190)
T cd00452          87 --PEVVKA-ANRAG-IPLLPGVA---------------------TP-TEIMQALELGADIVKLFPAE---A---VGPAYI  134 (190)
T ss_pred             --HHHHHH-HHHcC-CcEECCcC---------------------CH-HHHHHHHHCCCCEEEEcCCc---c---cCHHHH
Confidence              555444 44454 23333221                     23 55777788999988764321   1   145678


Q ss_pred             HHHhhcC-CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhcc
Q 021156          250 ALLGKYS-PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFG  295 (316)
Q Consensus       250 ~~l~~~~-~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~  295 (316)
                      +.+++.. ++|+++.||| +.+++.++++.|  ++++.+++++  +.
T Consensus       135 ~~l~~~~~~~p~~a~GGI-~~~n~~~~~~~G--~~~v~v~s~i--~~  176 (190)
T cd00452         135 KALKGPFPQVRFMPTGGV-SLDNAAEWLAAG--VVAVGGGSLL--PK  176 (190)
T ss_pred             HHHHhhCCCCeEEEeCCC-CHHHHHHHHHCC--CEEEEEchhc--ch
Confidence            8887655 5999999999 999999999998  9999999999  73

This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.

>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4

Probab=98.59  E-value=2.5e-06  Score=78.78  Aligned_cols=172  Identities=20%  Similarity=0.168  Sum_probs=112.6

Q ss_pred             ccCHHHHHHHHHHcCCCcceEEEecCCc-ccHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCC
Q 021156           92 DKSAAEFANLYKEDGLTGGHAIMLGADP-LSKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQ  169 (316)
Q Consensus        92 ~~~p~e~a~~~~~~G~~~l~lvDLda~~-~~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~  169 (316)
                      ..||.++|+.|.+.|+..+-+.==.--. .....+..+.+.+++|+.-===|- ..++.....+|||-|.+=...+.   
T Consensus        67 ~~d~~~~a~~y~~~GA~aiSVlTe~~~F~Gs~~dL~~v~~~~~~PvL~KDFIid~~QI~eA~~~GADaVLLI~~~L~---  143 (254)
T PF00218_consen   67 DFDPAEIAKAYEEAGAAAISVLTEPKFFGGSLEDLRAVRKAVDLPVLRKDFIIDPYQIYEARAAGADAVLLIAAILS---  143 (254)
T ss_dssp             S-SHHHHHHHHHHTT-SEEEEE--SCCCHHHHHHHHHHHHHSSS-EEEES---SHHHHHHHHHTT-SEEEEEGGGSG---
T ss_pred             cCCHHHHHHHHHhcCCCEEEEECCCCCCCCCHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHcCCCEeehhHHhCC---
Confidence            3589999999999998866553211111 233334444446888887633332 47899999999999988777777   


Q ss_pred             CCHHHHHHHH---HHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCH
Q 021156          170 MDLERLKDLV---RVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDD  246 (316)
Q Consensus       170 ~~~eli~ei~---~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~  246 (316)
                        ++.++++.   +.+|       +++-       |-++.         .+.++...+.|++-|-++.++....  ..|+
T Consensus       144 --~~~l~~l~~~a~~lG-------le~l-------VEVh~---------~~El~~al~~~a~iiGINnRdL~tf--~vd~  196 (254)
T PF00218_consen  144 --DDQLEELLELAHSLG-------LEAL-------VEVHN---------EEELERALEAGADIIGINNRDLKTF--EVDL  196 (254)
T ss_dssp             --HHHHHHHHHHHHHTT--------EEE-------EEESS---------HHHHHHHHHTT-SEEEEESBCTTTC--CBHT
T ss_pred             --HHHHHHHHHHHHHcC-------CCeE-------EEECC---------HHHHHHHHHcCCCEEEEeCccccCc--ccCh
Confidence              45555554   4455       3331       22221         2445666788999888898876522  3577


Q ss_pred             HHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCc
Q 021156          247 ELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGN  297 (316)
Q Consensus       247 eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~  297 (316)
                      +...++....  ++.+|+.+||.+++|+.++.+.|  +++++||+++  +..+
T Consensus       197 ~~~~~l~~~ip~~~~~iseSGI~~~~d~~~l~~~G--~davLVGe~l--m~~~  245 (254)
T PF00218_consen  197 NRTEELAPLIPKDVIVISESGIKTPEDARRLARAG--ADAVLVGEAL--MRSP  245 (254)
T ss_dssp             HHHHHHHCHSHTTSEEEEESS-SSHHHHHHHCTTT---SEEEESHHH--HTSS
T ss_pred             HHHHHHHhhCccceeEEeecCCCCHHHHHHHHHCC--CCEEEECHHH--hCCC
Confidence            7777777643  47899999999999999999998  9999999999  8665

1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....

>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2

Probab=98.59  E-value=4.2e-07  Score=87.03  Aligned_cols=138  Identities=21%  Similarity=0.220  Sum_probs=93.7

Q ss_pred             cCCCEEEeCCeeecC-C---CCCHHHHHHHHHHhcCceEE-----EeeeeeecCCeeEEEeCCcceecccCHHHHHHHHH
Q 021156          153 EGATHVIVTSYVFNN-G---QMDLERLKDLVRVVGKQRLV-----LDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFL  223 (316)
Q Consensus       153 ~Gad~VVigt~~~~~-~---~~~~eli~ei~~~~G~~~Iv-----vslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~  223 (316)
                      .+||.+.++...-+. +   ..+++.+.++.+.. ++.+-     +.+-+|.       . ..|..   -+..++++.++
T Consensus       159 ~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av-~~~~~~~~~~~Pv~vKl-------~-~~~~~---~~~~~ia~~l~  226 (327)
T cd04738         159 PYADYLVVNVSSPNTPGLRDLQGKEALRELLTAV-KEERNKLGKKVPLLVKI-------A-PDLSD---EELEDIADVAL  226 (327)
T ss_pred             hhCCEEEEECCCCCCCccccccCHHHHHHHHHHH-HHHHhhcccCCCeEEEe-------C-CCCCH---HHHHHHHHHHH
Confidence            348888875432211 0   12477777777665 22221     3344431       1 12321   14678899999


Q ss_pred             HcCCCEEEEeecCC-------------ccccCCC-----CHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcC
Q 021156          224 ASYADEFLVHGVDV-------------EGKKLGI-----DDELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRV  283 (316)
Q Consensus       224 ~~Ga~~ilvtdi~~-------------dG~~~G~-----d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~  283 (316)
                      +.|++.+.+|....             .|.++|+     .++.++.+++.+  ++||+++|||.|.+|+.+++..|  ++
T Consensus       227 ~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~aG--Ad  304 (327)
T cd04738         227 EHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAG--AS  304 (327)
T ss_pred             HcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHcC--CC
Confidence            99999998776422             1234554     268888998887  79999999999999999999987  99


Q ss_pred             EEEEccchhhccCcccHHHHHH
Q 021156          284 DVTVGSALDIFGGNLAYKDVVA  305 (316)
Q Consensus       284 gVivG~Al~~~~g~~~~~~~~~  305 (316)
                      .|+|||++ .++|++.++++.+
T Consensus       305 ~V~vg~~~-~~~gP~~~~~i~~  325 (327)
T cd04738         305 LVQLYTGL-VYEGPGLVKRIKR  325 (327)
T ss_pred             HHhccHHH-HhhCcHHHHHHHh
Confidence            99999998 2347888887754

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=98.58  E-value=3.1e-06  Score=85.28  Aligned_cols=176  Identities=19%  Similarity=0.189  Sum_probs=116.5

Q ss_pred             ccCHHHHHHHHHHcCCCcceEEEecCCc---ccHHHHHHHHHh------CCCcEEEecCCC-----HHHHHHHHHcCCCE
Q 021156           92 DKSAAEFANLYKEDGLTGGHAIMLGADP---LSKAAAIEALHA------YPGGLQVGGGIN-----SDNSLSYIEEGATH  157 (316)
Q Consensus        92 ~~~p~e~a~~~~~~G~~~l~lvDLda~~---~~~~~i~~~v~~------~~~pl~vGGGIr-----~e~~~~~l~~Gad~  157 (316)
                      +.+..++++.+.+.+...+-++|=++..   .....+.+.+..      ....+.||+.+.     .+.++.++++|++.
T Consensus       164 ~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aai~~~~~~~e~a~~L~~agvdv  243 (486)
T PRK05567        164 GTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAAVGVGADNEERAEALVEAGVDV  243 (486)
T ss_pred             CCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhCCCcccccCCCEEEEeecccCcchHHHHHHHHHhCCCE
Confidence            3455677788888888888888765431   223334333321      124688999886     26799999999999


Q ss_pred             EEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEE--ee-
Q 021156          158 VIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLV--HG-  234 (316)
Q Consensus       158 VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilv--td-  234 (316)
                      +++.++--.. +--.+.++++.+.++ +..++.=+                    +...+.++.+.+.|++.|.+  +. 
T Consensus       244 ivvD~a~g~~-~~vl~~i~~i~~~~p-~~~vi~g~--------------------v~t~e~a~~l~~aGad~i~vg~g~g  301 (486)
T PRK05567        244 LVVDTAHGHS-EGVLDRVREIKAKYP-DVQIIAGN--------------------VATAEAARALIEAGADAVKVGIGPG  301 (486)
T ss_pred             EEEECCCCcc-hhHHHHHHHHHhhCC-CCCEEEec--------------------cCCHHHHHHHHHcCCCEEEECCCCC
Confidence            9887752211 112456777776663 21112111                    12347888999999998853  11 


Q ss_pred             ---cCCccccCC-CCHHHHHHHhhc---CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          235 ---VDVEGKKLG-IDDELVALLGKY---SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       235 ---i~~dG~~~G-~d~eli~~l~~~---~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                         .++.-+.-| |+++.+.++++.   .++|||+.|||++..|+.+++.+|  ++.||+|+++
T Consensus       302 s~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~G--A~~v~~G~~~  363 (486)
T PRK05567        302 SICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAG--ASAVMLGSML  363 (486)
T ss_pred             ccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhC--CCEEEECccc
Confidence               111111222 578888777653   479999999999999999999999  8999999998

>PRK07565 dihydroorotate dehydrogenase 2; Reviewed

Probab=98.56  E-value=4.7e-06  Score=79.99  Aligned_cols=158  Identities=17%  Similarity=0.137  Sum_probs=96.5

Q ss_pred             HhCCCcEEEecCC-CHH---H-HHHHHHcCCCEEEeCCeeecC-----CCCCHHHHHHHHHHhcCceEEEeeeeeecCCe
Q 021156          130 HAYPGGLQVGGGI-NSD---N-SLSYIEEGATHVIVTSYVFNN-----GQMDLERLKDLVRVVGKQRLVLDLSCRKKDGK  199 (316)
Q Consensus       130 ~~~~~pl~vGGGI-r~e---~-~~~~l~~Gad~VVigt~~~~~-----~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~  199 (316)
                      ++.+.|+++.=+- ..+   + ++.+-++|+|.+-++...-..     |.-.++.+.++.+.. ++.+-+.+-+|     
T Consensus        98 ~~~~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v-~~~~~iPV~vK-----  171 (334)
T PRK07565         98 EAVDIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAV-KSAVSIPVAVK-----  171 (334)
T ss_pred             HhcCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHH-HhccCCcEEEE-----
Confidence            3445666544322 222   3 555566899999886432111     111123444555544 22222333333     


Q ss_pred             eEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCc-------------cccCCCC-----HHHHHHHhhcCCCcEE
Q 021156          200 YAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVE-------------GKKLGID-----DELVALLGKYSPIPVT  261 (316)
Q Consensus       200 ~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~d-------------G~~~G~d-----~eli~~l~~~~~iPVI  261 (316)
                          .....    .+..++++.+++.|++.|.++.....             +-++|+.     ++.+.++.+.+++|||
T Consensus       172 ----l~p~~----~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~ipIi  243 (334)
T PRK07565        172 ----LSPYF----SNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRVGADLA  243 (334)
T ss_pred             ----eCCCc----hhHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhcCCCEE
Confidence                22110    14678899999999999987664321             1122321     4567777777799999


Q ss_pred             EEeCCCCHHHHHHHHHhCCCcCEEEEccchhhcc-CcccHHHHHH
Q 021156          262 YAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFG-GNLAYKDVVA  305 (316)
Q Consensus       262 asGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~-g~~~~~~~~~  305 (316)
                      ++|||.|.+|+.+.+.+|  +++|.+|+++  +. |+-.++++.+
T Consensus       244 g~GGI~s~~Da~e~l~aG--A~~V~v~t~~--~~~g~~~~~~i~~  284 (334)
T PRK07565        244 ATTGVHDAEDVIKMLLAG--ADVVMIASAL--LRHGPDYIGTILR  284 (334)
T ss_pred             EECCCCCHHHHHHHHHcC--CCceeeehHH--hhhCcHHHHHHHH
Confidence            999999999999999988  9999999998  54 6644444444

>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2

Probab=98.56  E-value=5.4e-07  Score=86.59  Aligned_cols=148  Identities=16%  Similarity=0.133  Sum_probs=103.9

Q ss_pred             HHHHHHHcCCCEEEeCCe----------eec----C---C------CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEE
Q 021156          146 NSLSYIEEGATHVIVTSY----------VFN----N---G------QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAI  202 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~----------~~~----~---~------~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v  202 (316)
                      .++++.++|+|-|=|...          ...    |   |      ++..+.++++.+.+| +.+.+.+++...+    .
T Consensus       154 aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG-~d~~v~vris~~~----~  228 (338)
T cd04733         154 AARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVG-PGFPVGIKLNSAD----F  228 (338)
T ss_pred             HHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcC-CCCeEEEEEcHHH----c
Confidence            356677899999977533          111    1   1      234578888888887 4455666653111    0


Q ss_pred             EeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCcccc------------CCCCHHHHHHHhhcCCCcEEEEeCCCCHH
Q 021156          203 VTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKK------------LGIDDELVALLGKYSPIPVTYAGGVTTMA  270 (316)
Q Consensus       203 ~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~------------~G~d~eli~~l~~~~~iPVIasGGI~s~e  270 (316)
                      .-.||..   -+..++++.+++.|++.+-+|....+...            .+..++..+++++.+++||+++|++.+++
T Consensus       229 ~~~g~~~---eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~t~~  305 (338)
T cd04733         229 QRGGFTE---EDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTPLMVTGGFRTRA  305 (338)
T ss_pred             CCCCCCH---HHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHcCCCEEEeCCCCCHH
Confidence            1134532   14678899999999998876654322111            22346788899998999999999999999


Q ss_pred             HHHHHHHhCCCcCEEEEccchhhccCcccHHHHH
Q 021156          271 DLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVV  304 (316)
Q Consensus       271 Di~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~  304 (316)
                      ++.++++.| .++.|.+||++  +.+|..++.++
T Consensus       306 ~a~~~l~~g-~aD~V~lgR~~--iadP~~~~k~~  336 (338)
T cd04733         306 AMEQALASG-AVDGIGLARPL--ALEPDLPNKLL  336 (338)
T ss_pred             HHHHHHHcC-CCCeeeeChHh--hhCccHHHHHh
Confidence            999999998 59999999999  99998776654

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=98.55  E-value=3.4e-06  Score=85.09  Aligned_cols=175  Identities=19%  Similarity=0.200  Sum_probs=114.6

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCCc---ccHHHHHHH------HHhCCCcEEEecCC--CH---HHHHHHHHcCCCEE
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGADP---LSKAAAIEA------LHAYPGGLQVGGGI--NS---DNSLSYIEEGATHV  158 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~~---~~~~~i~~~------v~~~~~pl~vGGGI--r~---e~~~~~l~~Gad~V  158 (316)
                      .+..+..+.+.+.+...+-++|=++.-   .....+.+.      ++.-...+.||.-+  +.   +.++.+.++|++.+
T Consensus       178 ~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~~p~a~~D~~GrL~Vgaavg~~~~~~~~~~~l~~ag~d~i  257 (495)
T PTZ00314        178 ISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRGYPNASLDSNGQLLVGAAISTRPEDIERAAALIEAGVDVL  257 (495)
T ss_pred             CCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcccCchhhhccCCCEEEEEEECCCHHHHHHHHHHHHCCCCEE
Confidence            355677778888888888888755421   111222221      22224578887766  32   55889999999999


Q ss_pred             EeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEe-----
Q 021156          159 IVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVH-----  233 (316)
Q Consensus       159 Vigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvt-----  233 (316)
                      +++++--.+ ....+.++++.+.|+ +..++.=+                    +...+.++.+.+.|++.|.+.     
T Consensus       258 ~id~a~G~s-~~~~~~i~~ik~~~~-~~~v~aG~--------------------V~t~~~a~~~~~aGad~I~vg~g~Gs  315 (495)
T PTZ00314        258 VVDSSQGNS-IYQIDMIKKLKSNYP-HVDIIAGN--------------------VVTADQAKNLIDAGADGLRIGMGSGS  315 (495)
T ss_pred             EEecCCCCc-hHHHHHHHHHHhhCC-CceEEECC--------------------cCCHHHHHHHHHcCCCEEEECCcCCc
Confidence            998852111 112578888888874 21111111                    123478889999999987541     


Q ss_pred             -ecCCccccCC-CCHHHHHHHh---hcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          234 -GVDVEGKKLG-IDDELVALLG---KYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       234 -di~~dG~~~G-~d~eli~~l~---~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                       ..++.-+.-| |.+..+.+++   +..++|+|+.|||++..|+.+++.+|  +++||+|+++
T Consensus       316 ~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~~~~di~kAla~G--A~~Vm~G~~~  376 (495)
T PTZ00314        316 ICITQEVCAVGRPQASAVYHVARYARERGVPCIADGGIKNSGDICKALALG--ADCVMLGSLL  376 (495)
T ss_pred             ccccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHcC--CCEEEECchh
Confidence             1222222223 4566655554   44689999999999999999999999  9999999998

>PRK05286 dihydroorotate dehydrogenase 2; Reviewed

Probab=98.54  E-value=3.8e-07  Score=87.94  Aligned_cols=141  Identities=23%  Similarity=0.189  Sum_probs=95.9

Q ss_pred             cCCCEEEeCCeeecC-C---CCCHHHHHHHHHHhcCceEE-----EeeeeeecCCeeEEEeC-CcceecccCHHHHHHHH
Q 021156          153 EGATHVIVTSYVFNN-G---QMDLERLKDLVRVVGKQRLV-----LDLSCRKKDGKYAIVTD-RWQKFSDVYLDERVLDF  222 (316)
Q Consensus       153 ~Gad~VVigt~~~~~-~---~~~~eli~ei~~~~G~~~Iv-----vslD~k~~~g~~~v~~~-gw~~~~~~~~~e~a~~~  222 (316)
                      .+||.+.++...-+. +   ..+++.+.++.+.. ++.+-     +.+-+|         +. ++..   -+..++++.+
T Consensus       168 ~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aV-r~~~~~~~~~~PV~vK---------lsp~~~~---~~~~~ia~~l  234 (344)
T PRK05286        168 PYADYFTVNISSPNTPGLRDLQYGEALDELLAAL-KEAQAELHGYVPLLVK---------IAPDLSD---EELDDIADLA  234 (344)
T ss_pred             hhCCEEEEEccCCCCCCcccccCHHHHHHHHHHH-HHHHhccccCCceEEE---------eCCCCCH---HHHHHHHHHH
Confidence            358988876432211 0   11366677776665 22221     233333         22 2221   1367899999


Q ss_pred             HHcCCCEEEEeecCC-------------ccccCCC-----CHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCc
Q 021156          223 LASYADEFLVHGVDV-------------EGKKLGI-----DDELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGR  282 (316)
Q Consensus       223 ~~~Ga~~ilvtdi~~-------------dG~~~G~-----d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~  282 (316)
                      ++.|++.+.++....             .|.++|+     .++.++++++.+  ++|||++|||.+.+|+.+++..|  +
T Consensus       235 ~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aG--A  312 (344)
T PRK05286        235 LEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAG--A  312 (344)
T ss_pred             HHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcC--C
Confidence            999999998876431             2334553     577888998877  79999999999999999999987  9


Q ss_pred             CEEEEccchhhccCcccHHHHHHHHHh
Q 021156          283 VDVTVGSALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       283 ~gVivG~Al~~~~g~~~~~~~~~~~~~  309 (316)
                      +.|.|||++ .++|++.++++.+.+.+
T Consensus       313 d~V~v~~~~-~~~gP~~~~~i~~~L~~  338 (344)
T PRK05286        313 SLVQIYSGL-IYEGPGLVKEIVRGLAR  338 (344)
T ss_pred             CHHHHHHHH-HHhCchHHHHHHHHHHH
Confidence            999999998 23479888888765544

>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial

Probab=98.53  E-value=3.2e-06  Score=80.55  Aligned_cols=168  Identities=17%  Similarity=0.129  Sum_probs=105.0

Q ss_pred             HHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHhCCCcEEEecCCCH---HHHHHHHHcC--CCEEEeCCeeecCCCCC
Q 021156           97 EFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAYPGGLQVGGGINS---DNSLSYIEEG--ATHVIVTSYVFNNGQMD  171 (316)
Q Consensus        97 e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~~~pl~vGGGIr~---e~~~~~l~~G--ad~VVigt~~~~~~~~~  171 (316)
                      ++|+..++.|...+..= ++  ........+.++...+++-++=|++.   +.+..+.++|  +|.|+++++-=.+ +.-
T Consensus        49 ~LA~~a~~~G~~~i~hK-~~--~E~~~sfvrk~k~~~L~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~ahg~s-~~~  124 (321)
T TIGR01306        49 KLAEQLAENGYFYIMHR-FD--EESRIPFIKDMQERGLFASISVGVKACEYEFVTQLAEEALTPEYITIDIAHGHS-NSV  124 (321)
T ss_pred             HHHHHHHHcCCEEEEec-CC--HHHHHHHHHhccccccEEEEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCccCch-HHH
Confidence            57777777763322111 11  11111112222222345556666663   4588889999  7999999854322 111


Q ss_pred             HHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEee------cCCccccCCC-
Q 021156          172 LERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHG------VDVEGKKLGI-  244 (316)
Q Consensus       172 ~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtd------i~~dG~~~G~-  244 (316)
                      .+.++++.+.++ ...++.      ++              +...+.++.+.+.|++.+.+.-      .++.-+..|. 
T Consensus       125 ~~~i~~i~~~~p-~~~vi~------Gn--------------V~t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~  183 (321)
T TIGR01306       125 INMIKHIKTHLP-DSFVIA------GN--------------VGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTG  183 (321)
T ss_pred             HHHHHHHHHhCC-CCEEEE------ec--------------CCCHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCC
Confidence            466777777773 221111      11              1235789999999999986541      1222222233 


Q ss_pred             CH--HHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          245 DD--ELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       245 d~--eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      +|  ..+.++++.+++|||+.|||++-.|+.+++.+|  ++.|++|+.+
T Consensus       184 ~~~l~ai~ev~~a~~~pVIadGGIr~~~Di~KALa~G--Ad~Vmig~~~  230 (321)
T TIGR01306       184 GWQLAALRWCAKAARKPIIADGGIRTHGDIAKSIRFG--ASMVMIGSLF  230 (321)
T ss_pred             chHHHHHHHHHHhcCCeEEEECCcCcHHHHHHHHHcC--CCEEeechhh
Confidence            34  478888888899999999999999999999998  9999999887

A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.

>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3

Probab=98.50  E-value=1.7e-06  Score=83.45  Aligned_cols=88  Identities=20%  Similarity=0.043  Sum_probs=71.0

Q ss_pred             CHHHHHHHHHHcC-CCEEEEeecCCc------------cccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCC
Q 021156          214 YLDERVLDFLASY-ADEFLVHGVDVE------------GKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGI  280 (316)
Q Consensus       214 ~~~e~a~~~~~~G-a~~ilvtdi~~d------------G~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~  280 (316)
                      +..++++.+++.| ++.+-++.-...            ....+++++..+.+++.+++||+++||+.+++++.++++.| 
T Consensus       229 e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~-  307 (343)
T cd04734         229 EALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVDLPVFHAGRIRDPAEAEQALAAG-  307 (343)
T ss_pred             HHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcCCCEEeeCCCCCHHHHHHHHHcC-
Confidence            4568899999998 898766432111            11234578899999988999999999999999999999987 


Q ss_pred             CcCEEEEccchhhccCcccHHHHH
Q 021156          281 GRVDVTVGSALDIFGGNLAYKDVV  304 (316)
Q Consensus       281 g~~gVivG~Al~~~~g~~~~~~~~  304 (316)
                      +++.|++||++  ..+|+.++.+.
T Consensus       308 ~~D~V~~gR~~--ladP~l~~k~~  329 (343)
T cd04734         308 HADMVGMTRAH--IADPHLVAKAR  329 (343)
T ss_pred             CCCeeeecHHh--HhCccHHHHHH
Confidence            59999999999  99998776664

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.

>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes

Probab=98.47  E-value=2.7e-06  Score=80.45  Aligned_cols=133  Identities=17%  Similarity=0.053  Sum_probs=91.6

Q ss_pred             cEEEecCCC---H-HHHHHHHHcCCCEEEeCCeeecC-CCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcce
Q 021156          135 GLQVGGGIN---S-DNSLSYIEEGATHVIVTSYVFNN-GQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQK  209 (316)
Q Consensus       135 pl~vGGGIr---~-e~~~~~l~~Gad~VVigt~~~~~-~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~  209 (316)
                      -+|+-+...   . +.++.+.+.|++.+.++.-.-.. ....++.++++.+.++     ..+-+|      .+       
T Consensus       119 ~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~~~~~~i~~l~~~~~-----~pvivK------~v-------  180 (299)
T cd02809         119 WFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQWK-----GPLILK------GI-------  180 (299)
T ss_pred             EEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCCHHHHHHHHHhcC-----CCEEEe------ec-------
Confidence            366655433   2 44667778899988874322211 1223678888887763     122222      01       


Q ss_pred             ecccCHHHHHHHHHHcCCCEEEEeecCCccccCCC-CHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEE
Q 021156          210 FSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGI-DDELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVT  286 (316)
Q Consensus       210 ~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~-d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVi  286 (316)
                          ...+.++.+.+.|++.|.++....-....|+ +++.+.++++.+  ++|||++|||++..|+.+++.+|  +++|+
T Consensus       181 ----~s~~~a~~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lG--Ad~V~  254 (299)
T cd02809         181 ----LTPEDALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALG--ADAVL  254 (299)
T ss_pred             ----CCHHHHHHHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcC--CCEEE
Confidence                1246789999999999988653211111344 889999998765  59999999999999999999998  99999


Q ss_pred             Eccch
Q 021156          287 VGSAL  291 (316)
Q Consensus       287 vG~Al  291 (316)
                      +|+++
T Consensus       255 ig~~~  259 (299)
T cd02809         255 IGRPF  259 (299)
T ss_pred             EcHHH
Confidence            99988

This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.

>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS)

Probab=98.47  E-value=1.2e-05  Score=71.08  Aligned_cols=177  Identities=18%  Similarity=0.104  Sum_probs=105.5

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCC--cccHHHHHHHHHh--CCCcEEEecCCC-H--HHHHHHHHcCCCEEEeCCeeec
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGAD--PLSKAAAIEALHA--YPGGLQVGGGIN-S--DNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~--~~~~~~i~~~v~~--~~~pl~vGGGIr-~--e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      +..++++.+.+. +++   +-+...  ...-...++.+++  .+.|+.+++=+. .  ..++.+.++||+.+++-.+...
T Consensus        14 ~~~~~~~~l~~~-i~~---ieig~~~~~~~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~~~   89 (202)
T cd04726          14 EALELAKKVPDG-VDI---IEAGTPLIKSEGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAAPL   89 (202)
T ss_pred             HHHHHHHHhhhc-CCE---EEcCCHHHHHhCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeCCH
Confidence            445566666555 443   333211  1111334454543  367776665554 2  3478899999999998655421


Q ss_pred             CCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCcccc-CCCC
Q 021156          167 NGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKK-LGID  245 (316)
Q Consensus       167 ~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~-~G~d  245 (316)
                      +   ..+.+-+..+++|   +.+.+++-                +..++.+..+ +.+.|++.+.++..-..++. ....
T Consensus        90 ~---~~~~~i~~~~~~g---~~~~v~~~----------------~~~t~~e~~~-~~~~~~d~v~~~~~~~~~~~~~~~~  146 (202)
T cd04726          90 S---TIKKAVKAAKKYG---KEVQVDLI----------------GVEDPEKRAK-LLKLGVDIVILHRGIDAQAAGGWWP  146 (202)
T ss_pred             H---HHHHHHHHHHHcC---CeEEEEEe----------------CCCCHHHHHH-HHHCCCCEEEEcCcccccccCCCCC
Confidence            1   0232333334454   22333321                0113445554 77889998877432222333 2336


Q ss_pred             HHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHH
Q 021156          246 DELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDV  303 (316)
Q Consensus       246 ~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~  303 (316)
                      .+.++++.+..++|+.+.|||+ .+++.++++.|  ++++++|+++  +.. -++++.
T Consensus       147 ~~~i~~~~~~~~~~i~~~GGI~-~~~i~~~~~~G--ad~vvvGsai--~~~-~d~~~~  198 (202)
T cd04726         147 EDDLKKVKKLLGVKVAVAGGIT-PDTLPEFKKAG--ADIVIVGRAI--TGA-ADPAEA  198 (202)
T ss_pred             HHHHHHHHhhcCCCEEEECCcC-HHHHHHHHhcC--CCEEEEeehh--cCC-CCHHHH
Confidence            7888888876789999999996 99999999998  9999999999  643 244443

KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.

>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism

Probab=98.45  E-value=1.7e-06  Score=78.87  Aligned_cols=75  Identities=15%  Similarity=0.156  Sum_probs=65.0

Q ss_pred             HHHHHHHHHcCCCEEEEeecCCccccCCC-CHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhc
Q 021156          216 DERVLDFLASYADEFLVHGVDVEGKKLGI-DDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIF  294 (316)
Q Consensus       216 ~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~-d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~  294 (316)
                      ...++++.+.|++.+--+. +.-|+..|. |.++++.+++..++|||+.|||++++|+.+++++|  +++|++|+|+  .
T Consensus       134 ~~~ar~l~~~G~~~vmPlg-~pIGsg~Gi~~~~~I~~I~e~~~vpVI~egGI~tpeda~~AmelG--AdgVlV~SAI--t  208 (248)
T cd04728         134 PVLAKRLEDAGCAAVMPLG-SPIGSGQGLLNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELG--ADAVLLNTAI--A  208 (248)
T ss_pred             HHHHHHHHHcCCCEeCCCC-cCCCCCCCCCCHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcC--CCEEEEChHh--c
Confidence            4789999999999773211 445677888 99999999988899999999999999999999999  9999999999  6


Q ss_pred             c
Q 021156          295 G  295 (316)
Q Consensus       295 ~  295 (316)
                      .
T Consensus       209 ~  209 (248)
T cd04728         209 K  209 (248)
T ss_pred             C
Confidence            4

ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).

>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed

Probab=98.45  E-value=2e-05  Score=71.93  Aligned_cols=65  Identities=20%  Similarity=0.286  Sum_probs=55.9

Q ss_pred             EEEEeecCCccccCCCCHHHHHHHhhcCCC-cEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcc
Q 021156          229 EFLVHGVDVEGKKLGIDDELVALLGKYSPI-PVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNL  298 (316)
Q Consensus       229 ~ilvtdi~~dG~~~G~d~eli~~l~~~~~i-PVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~  298 (316)
                      .++|+.... ++..++|.+.++++++.++. |++++|||++.+++++++..|  +++|+||+++  ++++-
T Consensus       156 ~~vYle~gs-~~g~~~~~e~I~~v~~~~~~~pvivGGGIrs~e~a~~~l~~G--AD~VVVGSai--~~d~~  221 (232)
T PRK04169        156 PIVYLEYGG-GAGDPVPPEMVKAVKKALDITPLIYGGGIRSPEQARELMAAG--ADTIVVGNII--EEDPK  221 (232)
T ss_pred             CeEEEECCC-CCCCCCCHHHHHHHHHhcCCCcEEEECCCCCHHHHHHHHHhC--CCEEEEChHH--hhCHH
Confidence            356677543 56677799999999998888 999999999999999999998  9999999999  87643

>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA)

Probab=98.44  E-value=1.4e-05  Score=73.35  Aligned_cols=171  Identities=17%  Similarity=0.186  Sum_probs=107.4

Q ss_pred             CHHHHHHHHHHcCCCcceEE------EecCCc-c--------------cHHHHHHHHH-hCCCcEEEecCCCH------H
Q 021156           94 SAAEFANLYKEDGLTGGHAI------MLGADP-L--------------SKAAAIEALH-AYPGGLQVGGGINS------D  145 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lv------DLda~~-~--------------~~~~i~~~v~-~~~~pl~vGGGIr~------e  145 (316)
                      .-.+.++.+.++|++.+|+=      -.|+.. .              .-..+++.++ ...+|+.+=.=.+.      +
T Consensus        15 ~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~~~~G~~   94 (242)
T cd04724          15 TTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNPILQYGLE   94 (242)
T ss_pred             HHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCHHHHhCHH
Confidence            34578888989999988875      444421 1              1123444444 35678654322232      3


Q ss_pred             H-HHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHH
Q 021156          146 N-SLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLA  224 (316)
Q Consensus       146 ~-~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~  224 (316)
                      + ++.+.++|++.+++--...+.    .+.+.+..+++|-+. ++.+.-                   ..+.+.++.+.+
T Consensus        95 ~fi~~~~~aG~~giiipDl~~ee----~~~~~~~~~~~g~~~-i~~i~P-------------------~T~~~~i~~i~~  150 (242)
T cd04724          95 RFLRDAKEAGVDGLIIPDLPPEE----AEEFREAAKEYGLDL-IFLVAP-------------------TTPDERIKKIAE  150 (242)
T ss_pred             HHHHHHHHCCCcEEEECCCCHHH----HHHHHHHHHHcCCcE-EEEeCC-------------------CCCHHHHHHHHh
Confidence            3 778888999999885443332    333444445555222 222211                   123466677777


Q ss_pred             cCCCEEEEeecC-CccccCCC--C-HHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          225 SYADEFLVHGVD-VEGKKLGI--D-DELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       225 ~Ga~~ilvtdi~-~dG~~~G~--d-~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      ...+.+++..+. ..|...+.  + .+.++++++..++|+.++|||++.+++.++.+.   +++++||+++
T Consensus       151 ~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~~~pI~vggGI~~~e~~~~~~~~---ADgvVvGSai  218 (242)
T cd04724         151 LASGFIYYVSRTGVTGARTELPDDLKELIKRIRKYTDLPIAVGFGISTPEQAAEVAKY---ADGVIVGSAL  218 (242)
T ss_pred             hCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhcCCCcEEEEccCCCHHHHHHHHcc---CCEEEECHHH
Confidence            667766655542 12222322  2 367888888889999999999999999999986   5999999999

TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.44  E-value=1.5e-06  Score=87.17  Aligned_cols=174  Identities=18%  Similarity=0.140  Sum_probs=115.4

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCC---cccHHHHHHHHHhC-----CCcEEEecCC--C--H-HHHHHHHHcCCCEEEe
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGAD---PLSKAAAIEALHAY-----PGGLQVGGGI--N--S-DNSLSYIEEGATHVIV  160 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~---~~~~~~i~~~v~~~-----~~pl~vGGGI--r--~-e~~~~~l~~Gad~VVi  160 (316)
                      +..++...+.+.+...+-++|=++.   -.....+.+....-     ...+.||.=+  +  . +.++.+.++|++.|++
T Consensus       166 sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~~~~~~~g~l~V~aav~~~~~~~~~a~~Lv~aGvd~i~~  245 (479)
T PRK07807        166 DPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYTPAVDAAGRLRVAAAVGINGDVAAKARALLEAGVDVLVV  245 (479)
T ss_pred             cHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCCchhhhhhccchHhhhccChhHHHHHHHHHHhCCCEEEE
Confidence            4456666777777887777764332   01222232222110     1134455444  2  2 5588999999999999


Q ss_pred             CCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEE--ee----
Q 021156          161 TSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLV--HG----  234 (316)
Q Consensus       161 gt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilv--td----  234 (316)
                      +++-..+ +.-.++++++.++|+ +..++.=|+                    ...+-++.+.+.|++.+-+  -.    
T Consensus       246 D~a~~~~-~~~~~~i~~ik~~~p-~~~v~agnv--------------------~t~~~a~~l~~aGad~v~vgig~gsic  303 (479)
T PRK07807        246 DTAHGHQ-EKMLEALRAVRALDP-GVPIVAGNV--------------------VTAEGTRDLVEAGADIVKVGVGPGAMC  303 (479)
T ss_pred             eccCCcc-HHHHHHHHHHHHHCC-CCeEEeecc--------------------CCHHHHHHHHHcCCCEEEECccCCccc
Confidence            9886653 323678899998884 433333343                    2357889999999998741  01    


Q ss_pred             cCCccccCC-CCHHHHHHHhh---cCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          235 VDVEGKKLG-IDDELVALLGK---YSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       235 i~~dG~~~G-~d~eli~~l~~---~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      .++.=+.-| |++.++.++++   ..++|||+.|||.+..|+.+++.+|  +++||+|+++
T Consensus       304 tt~~~~~~~~p~~~av~~~~~~~~~~~~~via~ggi~~~~~~~~al~~g--a~~v~~g~~~  362 (479)
T PRK07807        304 TTRMMTGVGRPQFSAVLECAAAARELGAHVWADGGVRHPRDVALALAAG--ASNVMIGSWF  362 (479)
T ss_pred             ccccccCCchhHHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHcC--CCeeeccHhh
Confidence            122212222 68999998876   4689999999999999999999998  9999999988

>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain

Probab=98.42  E-value=5.7e-06  Score=79.42  Aligned_cols=147  Identities=16%  Similarity=0.068  Sum_probs=100.0

Q ss_pred             HHHHHHHcCCCEEEeCCe--------------eecC---------CCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEE
Q 021156          146 NSLSYIEEGATHVIVTSY--------------VFNN---------GQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAI  202 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~--------------~~~~---------~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v  202 (316)
                      .++++.++|+|.|=|...              .+.|         .++..+.++.+.+.+|++ +.+.+++...+    .
T Consensus       159 aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d-~~v~vri~~~~----~  233 (336)
T cd02932         159 AARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPED-KPLFVRISATD----W  233 (336)
T ss_pred             HHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCC-ceEEEEEcccc----c
Confidence            466777899999977642              1111         112257888888888744 45666653100    1


Q ss_pred             EeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccc----c-CCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHH
Q 021156          203 VTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGK----K-LGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKV  277 (316)
Q Consensus       203 ~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~----~-~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~  277 (316)
                      .-.||..   .+..++++.+++.|++.+-++.-.....    . .+.+++..+++++.+++||+++|++.++++++++++
T Consensus       234 ~~~g~~~---~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~G~i~t~~~a~~~l~  310 (336)
T cd02932         234 VEGGWDL---EDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEAGIPVIAVGLITDPEQAEAILE  310 (336)
T ss_pred             CCCCCCH---HHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHH
Confidence            1124432   2456888899999998775542111111    1 334678889999989999999999999999999999


Q ss_pred             hCCCcCEEEEccchhhccCcccHHHH
Q 021156          278 AGIGRVDVTVGSALDIFGGNLAYKDV  303 (316)
Q Consensus       278 ~G~g~~gVivG~Al~~~~g~~~~~~~  303 (316)
                      .| .++.|.+||++  +.+|.....+
T Consensus       311 ~g-~aD~V~~gR~~--i~dP~~~~k~  333 (336)
T cd02932         311 SG-RADLVALGREL--LRNPYWPLHA  333 (336)
T ss_pred             cC-CCCeehhhHHH--HhCccHHHHH
Confidence            98 58999999999  9888655443

YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.

>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]

Probab=98.41  E-value=1.3e-05  Score=73.64  Aligned_cols=173  Identities=19%  Similarity=0.156  Sum_probs=118.9

Q ss_pred             ccCHHHHHHHHHHcCCCcceEEEecCC-cccHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCC
Q 021156           92 DKSAAEFANLYKEDGLTGGHAIMLGAD-PLSKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQ  169 (316)
Q Consensus        92 ~~~p~e~a~~~~~~G~~~l~lvDLda~-~~~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~  169 (316)
                      +-||.++|+.|++.|+..+-+.-=..- ..+.+.+..+...+.+|+-.===|- ..++..+..+|||.|.+=...+.+  
T Consensus        65 d~dp~~ia~~Ye~~GAa~iSVLTd~~~F~Gs~e~L~~v~~~v~~PvL~KDFiiD~yQI~~Ar~~GADavLLI~~~L~~--  142 (254)
T COG0134          65 DFDPVEIAKAYEEGGAAAISVLTDPKYFQGSFEDLRAVRAAVDLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDD--  142 (254)
T ss_pred             cCCHHHHHHHHHHhCCeEEEEecCccccCCCHHHHHHHHHhcCCCeeeccCCCCHHHHHHHHHcCcccHHHHHHhcCH--
Confidence            458999999999999876554321111 1334444444456888875544343 578999999999987765555553  


Q ss_pred             CCHHHHHHHH---HHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCH
Q 021156          170 MDLERLKDLV---RVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDD  246 (316)
Q Consensus       170 ~~~eli~ei~---~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~  246 (316)
                         +.++++.   +.+|       +|+-       |-++         -.+.++++.+.|++-|-++.++....  -.|+
T Consensus       143 ---~~l~el~~~A~~LG-------m~~L-------VEVh---------~~eEl~rAl~~ga~iIGINnRdL~tf--~vdl  194 (254)
T COG0134         143 ---EQLEELVDRAHELG-------MEVL-------VEVH---------NEEELERALKLGAKIIGINNRDLTTL--EVDL  194 (254)
T ss_pred             ---HHHHHHHHHHHHcC-------CeeE-------EEEC---------CHHHHHHHHhCCCCEEEEeCCCcchh--eecH
Confidence               4344444   4444       3432       2222         23456666779999888888776422  3477


Q ss_pred             HHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcc
Q 021156          247 ELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNL  298 (316)
Q Consensus       247 eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~  298 (316)
                      +...+++...  +.-+|...||.+++|+.++.+.|  ++++.||+++  +..+=
T Consensus       195 ~~t~~la~~~p~~~~~IsESGI~~~~dv~~l~~~g--a~a~LVG~sl--M~~~~  244 (254)
T COG0134         195 ETTEKLAPLIPKDVILISESGISTPEDVRRLAKAG--ADAFLVGEAL--MRADD  244 (254)
T ss_pred             HHHHHHHhhCCCCcEEEecCCCCCHHHHHHHHHcC--CCEEEecHHH--hcCCC
Confidence            7788887654  36789999999999999999998  9999999999  87653

>PRK13523 NADPH dehydrogenase NamA; Provisional

Probab=98.41  E-value=2.8e-06  Score=81.73  Aligned_cols=92  Identities=13%  Similarity=-0.036  Sum_probs=76.3

Q ss_pred             CHHHHHHHHHHcCCCEEEEeecCC----ccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEcc
Q 021156          214 YLDERVLDFLASYADEFLVHGVDV----EGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGS  289 (316)
Q Consensus       214 ~~~e~a~~~~~~Ga~~ilvtdi~~----dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~  289 (316)
                      +..++++.+++.|++.+-++.-..    .....|+++++.+++++.+++||+++|++.+++++.++++.| ++|.|.+||
T Consensus       228 e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g-~~D~V~~gR  306 (337)
T PRK13523        228 DYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHANIATGAVGLITSGAQAEEILQNN-RADLIFIGR  306 (337)
T ss_pred             HHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcC-CCChHHhhH
Confidence            456788999999999887765431    122457789999999999999999999999999999999988 599999999


Q ss_pred             chhhccCcccHHHHHHHHH
Q 021156          290 ALDIFGGNLAYKDVVAWHA  308 (316)
Q Consensus       290 Al~~~~g~~~~~~~~~~~~  308 (316)
                      ++  ..+|..++.+.+.+.
T Consensus       307 ~~--iadP~~~~k~~~~~~  323 (337)
T PRK13523        307 EL--LRNPYFPRIAAKELG  323 (337)
T ss_pred             HH--HhCccHHHHHHHHcC
Confidence            99  999988888766443

>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain

Probab=98.41  E-value=5.3e-06  Score=79.87  Aligned_cols=149  Identities=15%  Similarity=0.089  Sum_probs=99.6

Q ss_pred             HHHHHHHcCCCEEEeCCee----------ecC-------C------CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEE
Q 021156          146 NSLSYIEEGATHVIVTSYV----------FNN-------G------QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAI  202 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~~----------~~~-------~------~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v  202 (316)
                      .++++.++|+|.|=|...-          ..|       |      ++..+.++.+.+..|.+.  +.  +|.....+ +
T Consensus       157 aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~--v~--vRis~~~~-~  231 (338)
T cd02933         157 AARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADR--VG--IRLSPFGT-F  231 (338)
T ss_pred             HHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCc--eE--EEECcccc-C
Confidence            3556678999999885432          111       1      234477777777777552  22  23211100 0


Q ss_pred             EeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCc
Q 021156          203 VTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGR  282 (316)
Q Consensus       203 ~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~  282 (316)
                      ....|. .+.-+..++++.+.+.|++.+-++.-.......+++++..+.+++.+++||+++||+. ++++.++++.| ++
T Consensus       232 ~~~~~~-~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i~-~~~a~~~l~~g-~~  308 (338)
T cd02933         232 NDMGDS-DPEATFSYLAKELNKRGLAYLHLVEPRVAGNPEDQPPDFLDFLRKAFKGPLIAAGGYD-AESAEAALADG-KA  308 (338)
T ss_pred             CCCCCC-CCHHHHHHHHHHHHHcCCcEEEEecCCCCCcccccchHHHHHHHHHcCCCEEEECCCC-HHHHHHHHHcC-CC
Confidence            000011 1112356788999999999876622212222367899999999999999999999997 99999999987 59


Q ss_pred             CEEEEccchhhccCcccHHHHH
Q 021156          283 VDVTVGSALDIFGGNLAYKDVV  304 (316)
Q Consensus       283 ~gVivG~Al~~~~g~~~~~~~~  304 (316)
                      +.|.+||++  ..+|..++++.
T Consensus       309 D~V~~gR~~--ladP~~~~k~~  328 (338)
T cd02933         309 DLVAFGRPF--IANPDLVERLK  328 (338)
T ss_pred             CEEEeCHhh--hhCcCHHHHHh
Confidence            999999999  99997776653

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.

>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated

Probab=98.41  E-value=2.7e-05  Score=77.29  Aligned_cols=180  Identities=20%  Similarity=0.128  Sum_probs=107.1

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCC-cccHHHHHHHHHhCCCcEEEec----CCCHHHHHHHHHcCCCEEEe-CCeeecC
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGAD-PLSKAAAIEALHAYPGGLQVGG----GINSDNSLSYIEEGATHVIV-TSYVFNN  167 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~-~~~~~~i~~~v~~~~~pl~vGG----GIr~e~~~~~l~~Gad~VVi-gt~~~~~  167 (316)
                      +-+++++...+.|++.+|+ ..... ......+.++.+..+.+.++.=    ++-..+++.+.++||+.|.+ +......
T Consensus        17 ~~~~~~~~~~~~Gv~~ie~-g~p~~~~~~~~~i~~l~~~~~~~~ii~D~kl~d~g~~~v~~a~~aGAdgV~v~g~~~~~~   95 (430)
T PRK07028         17 RAVEIAKEAVAGGADWIEA-GTPLIKSEGMNAIRTLRKNFPDHTIVADMKTMDTGAIEVEMAAKAGADIVCILGLADDST   95 (430)
T ss_pred             HHHHHHHHHHhcCCcEEEe-CCHHHHHhhHHHHHHHHHHCCCCEEEEEeeeccchHHHHHHHHHcCCCEEEEecCCChHH
Confidence            3445666655678888875 11110 0112233333344444444311    11135899999999999886 5422111


Q ss_pred             CCCCHHHHHHHHHHhcCceEEEe-eeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCC-C
Q 021156          168 GQMDLERLKDLVRVVGKQRLVLD-LSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGI-D  245 (316)
Q Consensus       168 ~~~~~eli~ei~~~~G~~~Ivvs-lD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~-d  245 (316)
                          +..+.+..+++|. .+++. +..                   .+..+.++.+.+.|++.+.++.-- ++...++ .
T Consensus        96 ----~~~~i~~a~~~G~-~~~~g~~s~-------------------~t~~e~~~~a~~~GaD~I~~~pg~-~~~~~~~~~  150 (430)
T PRK07028         96 ----IEDAVRAARKYGV-RLMADLINV-------------------PDPVKRAVELEELGVDYINVHVGI-DQQMLGKDP  150 (430)
T ss_pred             ----HHHHHHHHHHcCC-EEEEEecCC-------------------CCHHHHHHHHHhcCCCEEEEEecc-chhhcCCCh
Confidence                2223333344653 22221 111                   124566788889999998765422 1222233 4


Q ss_pred             HHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156          246 DELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVA  305 (316)
Q Consensus       246 ~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~  305 (316)
                      ++.++++++..++|+.+.||| +.+.+.++++.|  ++++++|+++  +... ++++..+
T Consensus       151 ~~~l~~l~~~~~iPI~a~GGI-~~~n~~~~l~aG--Adgv~vGsaI--~~~~-d~~~~~~  204 (430)
T PRK07028        151 LELLKEVSEEVSIPIAVAGGL-DAETAAKAVAAG--ADIVIVGGNI--IKSA-DVTEAAR  204 (430)
T ss_pred             HHHHHHHHhhCCCcEEEECCC-CHHHHHHHHHcC--CCEEEEChHH--cCCC-CHHHHHH
Confidence            678999988788999999999 679999999998  9999999999  6543 4444443

>PLN02334 ribulose-phosphate 3-epimerase

Probab=98.40  E-value=7.7e-05  Score=67.79  Aligned_cols=181  Identities=20%  Similarity=0.192  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHcCCCcceEEEecCCc-ccHH---HHHHHHHh-CCCcEEEecCCC-H-HHHHHHHHcCCCEEEeCCe-eec
Q 021156           95 AAEFANLYKEDGLTGGHAIMLGADP-LSKA---AAIEALHA-YPGGLQVGGGIN-S-DNSLSYIEEGATHVIVTSY-VFN  166 (316)
Q Consensus        95 p~e~a~~~~~~G~~~l~lvDLda~~-~~~~---~i~~~v~~-~~~pl~vGGGIr-~-e~~~~~l~~Gad~VVigt~-~~~  166 (316)
                      ..+.++...+.|++++|+=..|+.. ++..   .+.+.+++ ...|+.+-==+. . +.++.++++||+.|.+--. ...
T Consensus        22 l~~~l~~~~~~g~~~ihld~~d~~f~~~~~~g~~~~~~l~~~~~~~~~vhlmv~~p~d~~~~~~~~gad~v~vH~~q~~~  101 (229)
T PLN02334         22 LAEEAKRVLDAGADWLHVDVMDGHFVPNLTIGPPVVKALRKHTDAPLDCHLMVTNPEDYVPDFAKAGASIFTFHIEQAST  101 (229)
T ss_pred             HHHHHHHHHHcCCCEEEEecccCCcCCccccCHHHHHHHHhcCCCcEEEEeccCCHHHHHHHHHHcCCCEEEEeeccccc
Confidence            4456666777899999995556532 2211   34444543 333332222222 3 4588889999999944333 111


Q ss_pred             CCCCCH-HHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcC-CCEEEEeecCCccccCCC
Q 021156          167 NGQMDL-ERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASY-ADEFLVHGVDVEGKKLGI  244 (316)
Q Consensus       167 ~~~~~~-eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~G-a~~ilvtdi~~dG~~~G~  244 (316)
                      +   .+ +.++++. ..|   ..+.+.+.  ..               ++.+.++.+.+.| ++.+++..+....+.+..
T Consensus       102 d---~~~~~~~~i~-~~g---~~iGls~~--~~---------------t~~~~~~~~~~~~~~Dyi~~~~v~pg~~~~~~  157 (229)
T PLN02334        102 I---HLHRLIQQIK-SAG---MKAGVVLN--PG---------------TPVEAVEPVVEKGLVDMVLVMSVEPGFGGQSF  157 (229)
T ss_pred             h---hHHHHHHHHH-HCC---CeEEEEEC--CC---------------CCHHHHHHHHhccCCCEEEEEEEecCCCcccc
Confidence            1   13 3333332 233   23455442  10               2456677776764 999887666542222222


Q ss_pred             ---CHHHHHHHhhc-CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156          245 ---DDELVALLGKY-SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVA  305 (316)
Q Consensus       245 ---d~eli~~l~~~-~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~  305 (316)
                         .++.++++++. .++|+.+-||| +.+++..+.+.|  ++++++|+++  +... ++++..+
T Consensus       158 ~~~~~~~i~~~~~~~~~~~I~a~GGI-~~e~i~~l~~aG--ad~vvvgsai--~~~~-d~~~~~~  216 (229)
T PLN02334        158 IPSMMDKVRALRKKYPELDIEVDGGV-GPSTIDKAAEAG--ANVIVAGSAV--FGAP-DYAEVIS  216 (229)
T ss_pred             CHHHHHHHHHHHHhCCCCcEEEeCCC-CHHHHHHHHHcC--CCEEEEChHH--hCCC-CHHHHHH
Confidence               34567777665 46899999999 689999999998  9999999999  7533 4444433

>PRK05581 ribulose-phosphate 3-epimerase; Validated

Probab=98.40  E-value=5.8e-05  Score=67.64  Aligned_cols=178  Identities=19%  Similarity=0.204  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHcCCCcceEEEecCCc-cc---HHHHHHHHHh-CCCcEEEecCC--C-H-HHHHHHHHcCCCEEEeCCeee
Q 021156           95 AAEFANLYKEDGLTGGHAIMLGADP-LS---KAAAIEALHA-YPGGLQVGGGI--N-S-DNSLSYIEEGATHVIVTSYVF  165 (316)
Q Consensus        95 p~e~a~~~~~~G~~~l~lvDLda~~-~~---~~~i~~~v~~-~~~pl~vGGGI--r-~-e~~~~~l~~Gad~VVigt~~~  165 (316)
                      ..+.++...+.|++.+|+=..|+.. ++   .....+.++. ++.|  ++-.+  + . +.++.+.++|++.+.+--...
T Consensus        18 ~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~--~~v~l~v~d~~~~i~~~~~~g~d~v~vh~~~~   95 (220)
T PRK05581         18 LGEEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVTKLP--LDVHLMVENPDRYVPDFAKAGADIITFHVEAS   95 (220)
T ss_pred             HHHHHHHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcCCCc--EEEEeeeCCHHHHHHHHHHcCCCEEEEeeccc
Confidence            3356777778899999995555532 12   2333344432 3322  22223  2 3 457778899999966643322


Q ss_pred             cCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCC
Q 021156          166 NNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGID  245 (316)
Q Consensus       166 ~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d  245 (316)
                      ..    +....+..+.+| -++.+++...                   +..+.++.+. .+++.+++-.+...++.+..+
T Consensus        96 ~~----~~~~~~~~~~~~-~~~g~~~~~~-------------------t~~e~~~~~~-~~~d~i~~~~~~~g~tg~~~~  150 (220)
T PRK05581         96 EH----IHRLLQLIKSAG-IKAGLVLNPA-------------------TPLEPLEDVL-DLLDLVLLMSVNPGFGGQKFI  150 (220)
T ss_pred             hh----HHHHHHHHHHcC-CEEEEEECCC-------------------CCHHHHHHHH-hhCCEEEEEEECCCCCccccc
Confidence            22    222223333443 2333333211                   1235555543 347877665554444444446


Q ss_pred             HHHHHHH---hhcCC-----CcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156          246 DELVALL---GKYSP-----IPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVA  305 (316)
Q Consensus       246 ~eli~~l---~~~~~-----iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~  305 (316)
                      ++.++.+   ++..+     .++.+.|||+. +++.++.+.|  ++++++||++  +..+ ++++..+
T Consensus       151 ~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~-~nv~~l~~~G--aD~vvvgSai--~~~~-d~~~~~~  212 (220)
T PRK05581        151 PEVLEKIRELRKLIDERGLDILIEVDGGINA-DNIKECAEAG--ADVFVAGSAV--FGAP-DYKEAID  212 (220)
T ss_pred             HHHHHHHHHHHHHHHhcCCCceEEEECCCCH-HHHHHHHHcC--CCEEEEChhh--hCCC-CHHHHHH
Confidence            6554444   33322     34668899999 8999999988  9999999999  7433 4444444

>PRK00208 thiG thiazole synthase; Reviewed

Probab=98.39  E-value=2.5e-06  Score=77.87  Aligned_cols=75  Identities=16%  Similarity=0.170  Sum_probs=64.7

Q ss_pred             HHHHHHHHHcCCCEEEEeecCCccccCCC-CHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhc
Q 021156          216 DERVLDFLASYADEFLVHGVDVEGKKLGI-DDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIF  294 (316)
Q Consensus       216 ~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~-d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~  294 (316)
                      ...++++.+.|++.+--+. ..-|+..|. |.+.++.+.+..++|||+.|||++++|+.+++++|  +++|++|+|+  .
T Consensus       134 ~~~ak~l~~~G~~~vmPlg-~pIGsg~gi~~~~~i~~i~e~~~vpVIveaGI~tpeda~~AmelG--AdgVlV~SAI--t  208 (250)
T PRK00208        134 PVLAKRLEEAGCAAVMPLG-APIGSGLGLLNPYNLRIIIEQADVPVIVDAGIGTPSDAAQAMELG--ADAVLLNTAI--A  208 (250)
T ss_pred             HHHHHHHHHcCCCEeCCCC-cCCCCCCCCCCHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcC--CCEEEEChHh--h
Confidence            4789999999999772211 345677788 99999999988899999999999999999999999  9999999999  6


Q ss_pred             c
Q 021156          295 G  295 (316)
Q Consensus       295 ~  295 (316)
                      .
T Consensus       209 k  209 (250)
T PRK00208        209 V  209 (250)
T ss_pred             C
Confidence            4

>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]

Probab=98.39  E-value=1.5e-06  Score=85.11  Aligned_cols=155  Identities=13%  Similarity=0.153  Sum_probs=109.4

Q ss_pred             CcEEEecCCC-H-HHHHHHHHcCC--CEEEe--------------CCeeecCCCCCHHHHHHHHHHhc--CceEEEeeee
Q 021156          134 GGLQVGGGIN-S-DNSLSYIEEGA--THVIV--------------TSYVFNNGQMDLERLKDLVRVVG--KQRLVLDLSC  193 (316)
Q Consensus       134 ~pl~vGGGIr-~-e~~~~~l~~Ga--d~VVi--------------gt~~~~~~~~~~eli~ei~~~~G--~~~IvvslD~  193 (316)
                      .-+|+.||-- . ..+.+++..-|  |.|=|              ||++.++    |..+.++++..-  ++.|  .+.+
T Consensus       322 FGVQlag~~pdt~~kaaq~i~e~~~VDFIDlN~GCPIDlvy~qG~GsALl~r----p~rl~~~l~~m~~vs~~i--PiTV  395 (614)
T KOG2333|consen  322 FGVQLAGSKPDTAAKAAQVIAETCDVDFIDLNMGCPIDLVYRQGGGSALLNR----PARLIRILRAMNAVSGDI--PITV  395 (614)
T ss_pred             eeeEeccCChHHHHHHHHHHHhhcceeeeeccCCCChheeeccCCcchhhcC----cHHHHHHHHHHHHhccCC--CeEE
Confidence            4688989884 3 44555543222  22221              5677776    777777776542  1222  4555


Q ss_pred             eecCCeeEEEeCCcceecccCHHHHHHHHH-HcCCCEEEEeecCCccccCCC-CHHHHHHHhhc--CCCcEEEEeCCCCH
Q 021156          194 RKKDGKYAIVTDRWQKFSDVYLDERVLDFL-ASYADEFLVHGVDVEGKKLGI-DDELVALLGKY--SPIPVTYAGGVTTM  269 (316)
Q Consensus       194 k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~-~~Ga~~ilvtdi~~dG~~~G~-d~eli~~l~~~--~~iPVIasGGI~s~  269 (316)
                      |++.|        ..+.. .-..+++..+. +.|+..+.+|.++|...++-. ||+.+.++++.  +.+|+|.+|+|-|.
T Consensus       396 KiRTG--------~keg~-~~a~~Li~~i~newg~savTlHGRSRqQRYTK~AnWdYi~e~a~~ak~~l~liGNGDi~S~  466 (614)
T KOG2333|consen  396 KIRTG--------TKEGH-PVAHELIPRIVNEWGASAVTLHGRSRQQRYTKSANWDYIEECADKAKSALPLIGNGDILSW  466 (614)
T ss_pred             EEecc--------cccCc-hhHHHHHHHHhhccCcceEEecCchhhhhhhcccChHHHHHHHHhcccCceeEecCccccH
Confidence            43322        22211 23456666666 888999999999999998766 99999999764  34899999999999


Q ss_pred             HHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156          270 ADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVA  305 (316)
Q Consensus       270 eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~  305 (316)
                      +|..+-+..+-.+++||||+++  .-.||.|.|+.+
T Consensus       467 eDw~~~~~~~p~v~svMIaRGA--LIKPWIFtEIke  500 (614)
T KOG2333|consen  467 EDWYERLNQNPNVDSVMIARGA--LIKPWIFTEIKE  500 (614)
T ss_pred             HHHHHHhhcCCCcceEEeeccc--cccchHhhhhhh
Confidence            9988877776349999999999  999999999975

>TIGR00693 thiE thiamine-phosphate pyrophosphorylase

Probab=98.39  E-value=5.2e-05  Score=66.82  Aligned_cols=163  Identities=20%  Similarity=0.141  Sum_probs=107.8

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCcc----cHHHHHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCC
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADPL----SKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQ  169 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~~----~~~~i~~~v~~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~  169 (316)
                      +..+..+...+.|++.+++-+-+....    ....+...++..+.|+.+-.     +++-+.+.|++.|.++.....   
T Consensus        14 ~~~~~~~~~~~~g~~~v~lR~~~~~~~~~~~~~~~l~~~~~~~~~~l~i~~-----~~~la~~~g~~GvHl~~~~~~---   85 (196)
T TIGR00693        14 DLLNRVEAALKGGVTLVQLRDKGSNTRERLALAEKLQELCRRYGVPFIVND-----RVDLALALGADGVHLGQDDLP---   85 (196)
T ss_pred             cHHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHHHHHHHHHHhCCeEEEEC-----HHHHHHHcCCCEEecCcccCC---
Confidence            355666666677888777765543321    12233444455678888854     677788899999999754322   


Q ss_pred             CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCcccc----CCCC
Q 021156          170 MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKK----LGID  245 (316)
Q Consensus       170 ~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~----~G~d  245 (316)
                        ++.+++.   .+ ....+++.+.                   +. +.+.++.+.|++.+.+..+-..++.    ...+
T Consensus        86 --~~~~r~~---~~-~~~~ig~s~h-------------------~~-~e~~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g  139 (196)
T TIGR00693        86 --ASEARAL---LG-PDKIIGVSTH-------------------NL-EELAEAEAEGADYIGFGPIFPTPTKKDPAPPAG  139 (196)
T ss_pred             --HHHHHHh---cC-CCCEEEEeCC-------------------CH-HHHHHHhHcCCCEEEECCccCCCCCCCCCCCCC
Confidence              3333322   32 2234555552                   23 3345677889999875444333332    2237


Q ss_pred             HHHHHHHhhcC-CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhcc
Q 021156          246 DELVALLGKYS-PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFG  295 (316)
Q Consensus       246 ~eli~~l~~~~-~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~  295 (316)
                      ++.++++.+.. ++||++.||| +.+++.++++.|  +++|.+|+++  +.
T Consensus       140 ~~~l~~~~~~~~~~pv~a~GGI-~~~~~~~~~~~G--~~gva~~~~i--~~  185 (196)
T TIGR00693       140 VELLREIAATSIDIPIVAIGGI-TLENAAEVLAAG--ADGVAVVSAI--MQ  185 (196)
T ss_pred             HHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcC--CCEEEEhHHh--hC
Confidence            89999987654 5999999999 589999999998  9999999999  64

This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.

>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase

Probab=98.39  E-value=2.3e-05  Score=70.21  Aligned_cols=180  Identities=14%  Similarity=0.012  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHcCCCcceEE-EecCCcccHHHHHHHHHh-CCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCH
Q 021156           95 AAEFANLYKEDGLTGGHAI-MLGADPLSKAAAIEALHA-YPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDL  172 (316)
Q Consensus        95 p~e~a~~~~~~G~~~l~lv-DLda~~~~~~~i~~~v~~-~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~  172 (316)
                      -.++|+...+.|.+.+.+= -.+-...+...+.+.+++ +++|+++==|- .+.+.    -+||.+.+=|..=.+   ||
T Consensus        13 ~~~ia~~v~~~gtDaI~VGGS~gvt~~~~~~~v~~ik~~~~lPvilfp~~-~~~i~----~~aD~~~~~sllns~---~~   84 (205)
T TIGR01769        13 IEKIAKNAKDAGTDAIMVGGSLGIVESNLDQTVKKIKKITNLPVILFPGN-VNGLS----RYADAVFFMSLLNSA---DT   84 (205)
T ss_pred             HHHHHHHHHhcCCCEEEEcCcCCCCHHHHHHHHHHHHhhcCCCEEEECCC-ccccC----cCCCEEEEEEeecCC---Cc
Confidence            4456667788888855331 111112334445566665 77898864222 12211    347776554433211   36


Q ss_pred             HHHHHHH-------HHhcCceEEEeeeeeecCCeeEEEeCCccee-cccC---HHHHHHHHHHcCCCEEEEeecCCcccc
Q 021156          173 ERLKDLV-------RVVGKQRLVLDLSCRKKDGKYAIVTDRWQKF-SDVY---LDERVLDFLASYADEFLVHGVDVEGKK  241 (316)
Q Consensus       173 eli~ei~-------~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~-~~~~---~~e~a~~~~~~Ga~~ilvtdi~~dG~~  241 (316)
                      +++-...       +++| ..++..--+-.+.|. .+..-+-.+. ...+   ..+.+...+..|++.+  |-.+.+|+.
T Consensus        85 ~~i~g~~~~~~~~~~~~~-~e~ip~gYiv~~~~~-~v~~v~~a~~ip~~~~e~~~~~a~aa~~~G~~~i--~Le~~sGa~  160 (205)
T TIGR01769        85 YFIVGAQILGAITILKLN-LEVIPMAYLIVGPGG-AVGYVGKAREIPYNKPEIAAAYCLAAKYFGMKWV--YLEAGSGAS  160 (205)
T ss_pred             chhhhHHHHHHHHHHHcC-CcccceEEEEECCCC-ceeeecCcccCCCCCHHHHHHHHHHHHHcCCCEE--EEEcCCCCC
Confidence            5543332       5665 333332222112221 2221111111 1122   3345566667788855  335567886


Q ss_pred             CCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEc
Q 021156          242 LGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVG  288 (316)
Q Consensus       242 ~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG  288 (316)
                      ...+.++++++++.+++|++++|||++.++++++.+.|  +++|++|
T Consensus       161 ~~v~~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~~~G--AD~VVVG  205 (205)
T TIGR01769       161 YPVNPETISLVKKASGIPLIVGGGIRSPEIAYEIVLAG--ADAIVTG  205 (205)
T ss_pred             CCCCHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHcC--CCEEEeC
Confidence            66799999999998999999999999999999999998  8999997

This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.

>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase

Probab=98.37  E-value=9.1e-05  Score=65.86  Aligned_cols=134  Identities=17%  Similarity=0.071  Sum_probs=85.8

Q ss_pred             HHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHc
Q 021156          146 NSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLAS  225 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~  225 (316)
                      +++.+.++|||.+++-...-..   .+..+.+..+++| -.+  .+++-  +              ..++.+.++.+.+.
T Consensus        68 ~~~~~~~~Gad~i~vh~~~~~~---~~~~~i~~~~~~g-~~~--~~~~~--~--------------~~t~~~~~~~~~~~  125 (206)
T TIGR03128        68 EAEQAFAAGADIVTVLGVADDA---TIKGAVKAAKKHG-KEV--QVDLI--N--------------VKDKVKRAKELKEL  125 (206)
T ss_pred             HHHHHHHcCCCEEEEeccCCHH---HHHHHHHHHHHcC-CEE--EEEec--C--------------CCChHHHHHHHHHc
Confidence            6999999999999876553210   1233344445565 223  33321  0              01255777788888


Q ss_pred             CCCEEEEeecCCccccCCCCHHHHHHHhhcCC-CcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHH
Q 021156          226 YADEFLVHGVDVEGKKLGIDDELVALLGKYSP-IPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVV  304 (316)
Q Consensus       226 Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~-iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~  304 (316)
                      |++.+.++.-....+..+..++.++++.+..+ .++.+.||| +.+.+.++++.|  ++++++|+++  |..+ ++++..
T Consensus       126 g~d~v~~~pg~~~~~~~~~~~~~i~~l~~~~~~~~i~v~GGI-~~~n~~~~~~~G--a~~v~vGsai--~~~~-d~~~~~  199 (206)
T TIGR03128       126 GADYIGVHTGLDEQAKGQNPFEDLQTILKLVKEARVAVAGGI-NLDTIPDVIKLG--PDIVIVGGAI--TKAA-DPAEAA  199 (206)
T ss_pred             CCCEEEEcCCcCcccCCCCCHHHHHHHHHhcCCCcEEEECCc-CHHHHHHHHHcC--CCEEEEeehh--cCCC-CHHHHH
Confidence            99987665322222333346777888876544 455569999 889999999998  9999999999  7543 355554


Q ss_pred             HHH
Q 021156          305 AWH  307 (316)
Q Consensus       305 ~~~  307 (316)
                      +.+
T Consensus       200 ~~l  202 (206)
T TIGR03128       200 RQI  202 (206)
T ss_pred             HHH
Confidence            433

at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.

>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane

Probab=98.37  E-value=0.00018  Score=66.48  Aligned_cols=196  Identities=19%  Similarity=0.172  Sum_probs=127.2

Q ss_pred             HHHHHHHHHHcCCCcceEEEecCCc---ccH----HHHHHH---HH-hCCCcEEEecCC-C-H--HHHHHHHHcCCCEEE
Q 021156           95 AAEFANLYKEDGLTGGHAIMLGADP---LSK----AAAIEA---LH-AYPGGLQVGGGI-N-S--DNSLSYIEEGATHVI  159 (316)
Q Consensus        95 p~e~a~~~~~~G~~~l~lvDLda~~---~~~----~~i~~~---v~-~~~~pl~vGGGI-r-~--e~~~~~l~~Gad~VV  159 (316)
                      ..+=|+.|.+.|+|++.+-+....+   ...    ..|-.+   ++ .+.+|  +|=-+ + .  +.+.-+...||+.|=
T Consensus        31 A~~ea~~l~~~GvDgiiveN~~D~Py~~~~~~etvaaM~~i~~~v~~~~~~p--~GVnvL~nd~~aalaiA~A~ga~FIR  108 (254)
T PF03437_consen   31 AVREAEALEEGGVDGIIVENMGDVPYPKRVGPETVAAMARIAREVRREVSVP--VGVNVLRNDPKAALAIAAATGADFIR  108 (254)
T ss_pred             HHHHHHHHHHCCCCEEEEecCCCCCccCCCCHHHHHHHHHHHHHHHHhCCCC--EEeeeecCCCHHHHHHHHHhCCCEEE
Confidence            3456677888999999999876431   111    222222   22 35555  44344 2 2  345556678999876


Q ss_pred             eCCeeec----CCCC--CHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH-HHcCCCEEEE
Q 021156          160 VTSYVFN----NGQM--DLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF-LASYADEFLV  232 (316)
Q Consensus       160 igt~~~~----~~~~--~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~-~~~Ga~~ilv  232 (316)
                      ++.....    .|-+  +...+-+..+..|.+ |.+--|++.+++.       +.  ...++.+.++.. ...++|.+++
T Consensus       109 v~~~~g~~~~d~G~~~~~a~e~~r~R~~l~a~-v~ilaDV~~kh~~-------~l--~~~~~~~~~~~a~~~~~aDaviV  178 (254)
T PF03437_consen  109 VNVFVGAYVTDEGIIEGCAGELLRYRKRLGAD-VKILADVHVKHSS-------PL--ATRDLEEAAKDAVERGGADAVIV  178 (254)
T ss_pred             ecCEEceecccCccccccHHHHHHHHHHcCCC-eEEEeeechhhcc-------cC--CCCCHHHHHHHHHHhcCCCEEEE
Confidence            5543322    1322  234555666777776 7777787633331       11  123466677666 5677999998


Q ss_pred             eecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchh---hccCcccHHHHHHHHHh
Q 021156          233 HGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALD---IFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       233 tdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~---~~~g~~~~~~~~~~~~~  309 (316)
                      |.-.   |...+|.+.++++++.+++||++++|+.. +.+.+++..   ++|+|||+.+=   ...|+++.+.+.++.+.
T Consensus       179 tG~~---TG~~~~~~~l~~vr~~~~~PVlvGSGvt~-~Ni~~~l~~---ADG~IVGS~~K~~G~~~n~VD~~Rv~~fm~~  251 (254)
T PF03437_consen  179 TGKA---TGEPPDPEKLKRVREAVPVPVLVGSGVTP-ENIAEYLSY---ADGAIVGSYFKKDGKWENPVDPERVRRFMEA  251 (254)
T ss_pred             CCcc---cCCCCCHHHHHHHHhcCCCCEEEecCCCH-HHHHHHHHh---CCEEEEeeeeeeCCEeCCcCCHHHHHHHHHH
Confidence            7653   44667999999999988899999999765 778888876   69999999871   12346888888887764

It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.

>PLN02460 indole-3-glycerol-phosphate synthase

Probab=98.35  E-value=2e-05  Score=75.39  Aligned_cols=176  Identities=16%  Similarity=0.100  Sum_probs=115.5

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCC-cccHHHHHHHHHh-CCCcEEEecCC-CHHHHHHHHHcCCCEEEeCCeeecCCC
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGAD-PLSKAAAIEALHA-YPGGLQVGGGI-NSDNSLSYIEEGATHVIVTSYVFNNGQ  169 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~-~~~~~~i~~~v~~-~~~pl~vGGGI-r~e~~~~~l~~Gad~VVigt~~~~~~~  169 (316)
                      -||.++|+.|.+.|+..+-+.-=..- ......+.++-+. +++|+.-===| ..-++.....+|||-|.+=.+.+.+. 
T Consensus       139 ~dp~~iA~~Ye~~GA~aISVLTd~~~F~Gs~e~L~~vr~~~v~lPvLrKDFIID~yQI~eAr~~GADAVLLIaaiL~~~-  217 (338)
T PLN02460        139 FDPVEIAQAYEKGGAACLSVLTDEKYFQGSFENLEAIRNAGVKCPLLCKEFIVDAWQIYYARSKGADAILLIAAVLPDL-  217 (338)
T ss_pred             CCHHHHHHHHHhCCCcEEEEecCcCcCCCCHHHHHHHHHcCCCCCEeeccccCCHHHHHHHHHcCCCcHHHHHHhCCHH-
Confidence            48999999999999876554321111 1233334333334 67887543333 34778999999999988776666620 


Q ss_pred             CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHc-CCCEEEEeecCCccccCCCCHHH
Q 021156          170 MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLAS-YADEFLVHGVDVEGKKLGIDDEL  248 (316)
Q Consensus       170 ~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~-Ga~~ilvtdi~~dG~~~G~d~el  248 (316)
                       ....+-++++.+|       +++-       |-++         ..+.+....+. |++-|-++.++.+..  ..|++.
T Consensus       218 -~L~~l~~~A~~LG-------me~L-------VEVH---------~~~ElerAl~~~ga~iIGINNRdL~Tf--~vDl~~  271 (338)
T PLN02460        218 -DIKYMLKICKSLG-------MAAL-------IEVH---------DEREMDRVLGIEGVELIGINNRSLETF--EVDISN  271 (338)
T ss_pred             -HHHHHHHHHHHcC-------CeEE-------EEeC---------CHHHHHHHHhcCCCCEEEEeCCCCCcc--eECHHH
Confidence             0233334444454       4432       2122         12445566676 999888898887522  247777


Q ss_pred             HHHHhh-----c---CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCccc
Q 021156          249 VALLGK-----Y---SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLA  299 (316)
Q Consensus       249 i~~l~~-----~---~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~  299 (316)
                      ..++..     .   .++-+++.+||.+.+|+.++.+.|  +++|.||.++  +..+=+
T Consensus       272 t~~L~~~~~~~~i~~~~~~~VsESGI~t~~Dv~~l~~~G--adAvLVGEsL--Mr~~dp  326 (338)
T PLN02460        272 TKKLLEGERGEQIREKGIIVVGESGLFTPDDVAYVQNAG--VKAVLVGESL--VKQDDP  326 (338)
T ss_pred             HHHHhhhccccccCCCCeEEEECCCCCCHHHHHHHHHCC--CCEEEECHHH--hCCCCH
Confidence            777765     1   134578999999999999999998  9999999999  876543

>cd02812 PcrB_like PcrB_like proteins

Probab=98.34  E-value=2.2e-06  Score=77.42  Aligned_cols=73  Identities=16%  Similarity=0.116  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcC-CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhh
Q 021156          215 LDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYS-PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDI  293 (316)
Q Consensus       215 ~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~-~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~  293 (316)
                      ....|...+..| -++++.+  -.|+  ..|.++++++++.+ ++|++++|||++.+++++++++|  +++|++|+++  
T Consensus       137 ~~ayA~aae~~g-~~ivyLe--~SG~--~~~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aG--AD~VVVGsai--  207 (219)
T cd02812         137 AAAYALAAEYLG-MPIVYLE--YSGA--YGPPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAG--ADTIVVGNIV--  207 (219)
T ss_pred             HHHHHHHHHHcC-CeEEEeC--CCCC--cCCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcC--CCEEEECchh--
Confidence            334456666667 5566555  3344  37999999999988 99999999999999999999998  9999999999  


Q ss_pred             ccC
Q 021156          294 FGG  296 (316)
Q Consensus       294 ~~g  296 (316)
                      +++
T Consensus       208 ~~~  210 (219)
T cd02812         208 EED  210 (219)
T ss_pred             hCC
Confidence            886

One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.

>TIGR00262 trpA tryptophan synthase, alpha subunit

Probab=98.31  E-value=8.4e-06  Score=75.52  Aligned_cols=134  Identities=21%  Similarity=0.180  Sum_probs=86.6

Q ss_pred             CCCcEEEecCCCH------HH-HHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEe
Q 021156          132 YPGGLQVGGGINS------DN-SLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVT  204 (316)
Q Consensus       132 ~~~pl~vGGGIr~------e~-~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~  204 (316)
                      .++|+..=+=.+.      ++ ++.+.++|++.+++--...+.    .+.+.+..+++|-+.+ +.+.-           
T Consensus        86 ~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee----~~~~~~~~~~~gl~~i-~lv~P-----------  149 (256)
T TIGR00262        86 PNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEE----SGDLVEAAKKHGVKPI-FLVAP-----------  149 (256)
T ss_pred             CCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHH----HHHHHHHHHHCCCcEE-EEECC-----------
Confidence            4678652222233      44 888889999998887665543    4444455566653322 22221           


Q ss_pred             CCcceecccCHHHHHHHHHHcCCCEEEEeecC-Ccccc---CCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCC
Q 021156          205 DRWQKFSDVYLDERVLDFLASYADEFLVHGVD-VEGKK---LGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGI  280 (316)
Q Consensus       205 ~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~-~dG~~---~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~  280 (316)
                              ....+.++.+.+..-+.+.+..+. ..|..   .....+.++++++.++.||+++|||++.+++.++.+.| 
T Consensus       150 --------~T~~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~~~G-  220 (256)
T TIGR00262       150 --------NADDERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYSAKPVLVGFGISKPEQVKQAIDAG-  220 (256)
T ss_pred             --------CCCHHHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcCCCEEEeCCCCCHHHHHHHHHcC-
Confidence                    122355555656544455544432 22221   12246688888888889999999999999999999998 


Q ss_pred             CcCEEEEccch
Q 021156          281 GRVDVTVGSAL  291 (316)
Q Consensus       281 g~~gVivG~Al  291 (316)
                       +++|++|+|+
T Consensus       221 -ADgvVvGSai  230 (256)
T TIGR00262       221 -ADGVIVGSAI  230 (256)
T ss_pred             -CCEEEECHHH
Confidence             9999999999

Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.

>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family

Probab=98.30  E-value=0.00022  Score=66.04  Aligned_cols=195  Identities=18%  Similarity=0.182  Sum_probs=129.0

Q ss_pred             HHHHHHHHHHcCCCcceEEEecCCcc---c----HHHHHHH---HH-hCCCcEEEecCC-C-H--HHHHHHHHcCCCEEE
Q 021156           95 AAEFANLYKEDGLTGGHAIMLGADPL---S----KAAAIEA---LH-AYPGGLQVGGGI-N-S--DNSLSYIEEGATHVI  159 (316)
Q Consensus        95 p~e~a~~~~~~G~~~l~lvDLda~~~---~----~~~i~~~---v~-~~~~pl~vGGGI-r-~--e~~~~~l~~Gad~VV  159 (316)
                      ..+=|+.|++.|+|++.+=+....+-   .    ...|-.+   ++ .+++|  +|=.+ + .  +.+.-+...||+.|=
T Consensus        30 A~~ea~~l~~~GvD~viveN~~d~P~~~~~~p~tva~m~~i~~~v~~~~~~p--~GvnvL~nd~~aal~iA~a~ga~FIR  107 (257)
T TIGR00259        30 AWKDAMALEEGGVDAVMFENFFDAPFLKEVDPETVAAMAVIAGQLKSDVSIP--LGINVLRNDAVAALAIAMAVGAKFIR  107 (257)
T ss_pred             HHHHHHHHHhCCCCEEEEecCCCCCCcCCCCHHHHHHHHHHHHHHHHhcCCC--eeeeeecCCCHHHHHHHHHhCCCEEE
Confidence            34556778888999999877764421   1    2222222   32 45666  44444 3 2  345555678999765


Q ss_pred             e----CCeeecCCC--CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcC-CCEEEE
Q 021156          160 V----TSYVFNNGQ--MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASY-ADEFLV  232 (316)
Q Consensus       160 i----gt~~~~~~~--~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~G-a~~ilv  232 (316)
                      +    |+..-..|-  -+...+-+..+..| +.+.+--|++.+++        .. -.+.++.|.++.....+ ++.+++
T Consensus       108 v~~~~g~~~~d~G~~~~~a~e~~r~r~~l~-~~v~i~adV~~kh~--------~~-l~~~~~~e~a~~~~~~~~aDaviv  177 (257)
T TIGR00259       108 VNVLTGVYASDQGIIEGNAGELIRYKKLLG-SEVKILADIVVKHA--------VH-LGNRDLESIALDTVERGLADAVIL  177 (257)
T ss_pred             EccEeeeEecccccccccHHHHHHHHHHcC-CCcEEEeceeeccc--------Cc-CCCCCHHHHHHHHHHhcCCCEEEE
Confidence            5    444322231  23455666777776 56767677753333        11 23457888899888887 999997


Q ss_pred             eecCCccccCCCCHHHHHHHhhc-CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccC----cccHHHHHHHH
Q 021156          233 HGVDVEGKKLGIDDELVALLGKY-SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGG----NLAYKDVVAWH  307 (316)
Q Consensus       233 tdi~~dG~~~G~d~eli~~l~~~-~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g----~~~~~~~~~~~  307 (316)
                      |..   +|...+||+.++.+++. .+.|++++||+. ++.+.++++.   ++|++|||.+= -.|    +++.+.+.++.
T Consensus       178 tG~---~TG~~~d~~~l~~vr~~~~~~PvllggGvt-~eNv~e~l~~---adGviVgS~~K-~~G~~~n~~D~~rV~~Fm  249 (257)
T TIGR00259       178 SGK---TTGTEVDLELLKLAKETVKDTPVLAGSGVN-LENVEELLSI---ADGVIVATTIK-KDGVFNNFVDQARVSQFV  249 (257)
T ss_pred             CcC---CCCCCCCHHHHHHHHhccCCCeEEEECCCC-HHHHHHHHhh---CCEEEECCCcc-cCCccCCCcCHHHHHHHH
Confidence            764   45566899999999874 478999999986 4788888886   79999999982 224    67888888877


Q ss_pred             Hh
Q 021156          308 AQ  309 (316)
Q Consensus       308 ~~  309 (316)
                      ++
T Consensus       250 ~~  251 (257)
T TIGR00259       250 EK  251 (257)
T ss_pred             HH
Confidence            65

Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.

>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein

Probab=98.29  E-value=5.4e-05  Score=68.61  Aligned_cols=184  Identities=16%  Similarity=0.101  Sum_probs=103.2

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCc----ccHHHHHHHHHhCCCcEEEe-cCCCHHHHHHHHHcCCCEEEeCCeeecCC
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADP----LSKAAAIEALHAYPGGLQVG-GGINSDNSLSYIEEGATHVIVTSYVFNNG  168 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~----~~~~~i~~~v~~~~~pl~vG-GGIr~e~~~~~l~~Gad~VVigt~~~~~~  168 (316)
                      .+.+.++...+.|.+.+.   +.+..    .+...+.+.+++..+|+..= |...  .+    --+||.+.+=|..=.+ 
T Consensus        15 ~~~~~~~~~~~~gtdai~---vGGS~~vt~~~~~~~v~~ik~~~lPvilfp~~~~--~i----~~~aDa~l~~svlNs~-   84 (223)
T TIGR01768        15 EADEIAKAAAESGTDAIL---IGGSQGVTYEKTDTLIEALRRYGLPIILFPSNPT--NV----SRDADALFFPSVLNSD-   84 (223)
T ss_pred             ccHHHHHHHHhcCCCEEE---EcCCCcccHHHHHHHHHHHhccCCCEEEeCCCcc--cc----CcCCCEEEEEEeecCC-
Confidence            355788888888888543   33332    34455566677767888742 3222  11    1347776554433222 


Q ss_pred             CCCHHHHHHHH----HHhcC--ceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHH---HHH-cCCCEEEEeecCCc
Q 021156          169 QMDLERLKDLV----RVVGK--QRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLD---FLA-SYADEFLVHGVDVE  238 (316)
Q Consensus       169 ~~~~eli~ei~----~~~G~--~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~---~~~-~Ga~~ilvtdi~~d  238 (316)
                        ||+++-...    ..+++  ..++..--+-.+.|. .+.--+-.+....+..+.+..   ..+ .|.. ++|..-. .
T Consensus        85 --~~~~iig~~~~~~~~~~~~~~e~ip~gYiv~~~~~-~v~~v~~a~~~p~~~~~~aa~~~lA~~~~g~~-~vYlE~g-s  159 (223)
T TIGR01768        85 --DPYWIIGAQIEAAPKFKKIGEEIIPEGYIIVNPGG-AAARVTKAKPIPYDKEDLAAYAAMAEEMLGMP-IIYLEAG-S  159 (223)
T ss_pred             --CchHHHhHHHHHHHHHhhhcceecceEEEEECCCc-ceeecccccccCCCcHHHHHHHHHHHHHcCCc-EEEEEec-C
Confidence              355533322    22211  233222221111221 222111111111233333222   222 2444 5555532 2


Q ss_pred             cccCCCCHHHHHHHhhcC-CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccC
Q 021156          239 GKKLGIDDELVALLGKYS-PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGG  296 (316)
Q Consensus       239 G~~~G~d~eli~~l~~~~-~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g  296 (316)
                      |.....+.+.++++++.+ ++|++++|||++.+++++++++|  +++|++|+++  +++
T Consensus       160 ~~g~~v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aG--AD~VVVGs~~--~~d  214 (223)
T TIGR01768       160 GAPEPVPPELVAEVKKVLDKARLFVGGGIRSVEKAREMAEAG--ADTIVTGNVI--EED  214 (223)
T ss_pred             CCCCCcCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHcC--CCEEEECcHH--hhC
Confidence            344555899999999887 89999999999999999999998  9999999999  886

This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.

>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase

Probab=98.28  E-value=1.3e-05  Score=77.26  Aligned_cols=171  Identities=20%  Similarity=0.215  Sum_probs=108.5

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHh--------CCCcEEEecC--CC--H-HHHHHHHHcCCCEEEe
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHA--------YPGGLQVGGG--IN--S-DNSLSYIEEGATHVIV  160 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~--------~~~pl~vGGG--Ir--~-e~~~~~l~~Gad~VVi  160 (316)
                      ++ ++|..+++.|  ++.++..+.........++.+++        ...++.|+..  ++  . +.++.+.++|+|.++|
T Consensus        50 e~-~mAiama~~G--glgvih~~~~~e~q~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~~~~er~~~L~~agvD~ivI  126 (352)
T PF00478_consen   50 ES-EMAIAMARLG--GLGVIHRNMSIEEQAEEVKKVKRYYPNASKDEKGRLLVAAAVGTRDDDFERAEALVEAGVDVIVI  126 (352)
T ss_dssp             SH-HHHHHHHHTT--SEEEEESSSCHHHHHHHHHHHHTHHTTHHBHTTSCBCEEEEEESSTCHHHHHHHHHHTT-SEEEE
T ss_pred             hH-HHHHHHHHhc--CCceecCCCCHHHHHHHHhhhccccccccccccccceEEEEecCCHHHHHHHHHHHHcCCCEEEc
Confidence            44 5888888876  55666666543233334444432        2345666664  44  2 6689999999999999


Q ss_pred             CCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEe------e
Q 021156          161 TSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVH------G  234 (316)
Q Consensus       161 gt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvt------d  234 (316)
                      .++--.+ +.-.+.++++.+.|+ +..++.=.+                    -..+-++.+.+.|++.+.+-      .
T Consensus       127 D~a~g~s-~~~~~~ik~ik~~~~-~~~viaGNV--------------------~T~e~a~~L~~aGad~vkVGiGpGsiC  184 (352)
T PF00478_consen  127 DSAHGHS-EHVIDMIKKIKKKFP-DVPVIAGNV--------------------VTYEGAKDLIDAGADAVKVGIGPGSIC  184 (352)
T ss_dssp             E-SSTTS-HHHHHHHHHHHHHST-TSEEEEEEE---------------------SHHHHHHHHHTT-SEEEESSSSSTTB
T ss_pred             cccCccH-HHHHHHHHHHHHhCC-CceEEeccc--------------------CCHHHHHHHHHcCCCEEEEeccCCccc
Confidence            8765443 111467888888885 322222222                    12478889999999988541      2


Q ss_pred             cCCccccCCC-CHHHHHHHh---hcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          235 VDVEGKKLGI-DDELVALLG---KYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       235 i~~dG~~~G~-d~eli~~l~---~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      .+|.-+.-|. -+..+.+.+   +..++|||+-|||++.-|+.+++..|  ++.||+|+.|
T Consensus       185 tTr~v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGGi~~sGDi~KAla~G--Ad~VMlG~ll  243 (352)
T PF00478_consen  185 TTREVTGVGVPQLTAVYECAEAARDYGVPIIADGGIRTSGDIVKALAAG--ADAVMLGSLL  243 (352)
T ss_dssp             HHHHHHSBSCTHHHHHHHHHHHHHCTTSEEEEESS-SSHHHHHHHHHTT---SEEEESTTT
T ss_pred             ccccccccCCcHHHHHHHHHHHhhhccCceeecCCcCcccceeeeeeec--ccceeechhh
Confidence            2333333343 444555554   34579999999999999999999999  8999999977

These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....

>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional

Probab=98.28  E-value=5.4e-05  Score=78.99  Aligned_cols=185  Identities=16%  Similarity=0.082  Sum_probs=124.2

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCC-cccHHHHHHHHHhCCCcEEEecCC-CHHHHHHHHHcCCCEEEeCCeeecCCCC
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGAD-PLSKAAAIEALHAYPGGLQVGGGI-NSDNSLSYIEEGATHVIVTSYVFNNGQM  170 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~-~~~~~~i~~~v~~~~~pl~vGGGI-r~e~~~~~l~~Gad~VVigt~~~~~~~~  170 (316)
                      .||.++|+.|.+.|+..+-+.-=.-- ..+...+..+.+.+++||.-===| ...++.+...+|||.|.+=...+.    
T Consensus        70 ~d~~~~a~~y~~~GA~aiSVlTe~~~F~Gs~~~l~~vr~~v~~PvLrKDFIid~~QI~ea~~~GADavLLI~~~L~----  145 (695)
T PRK13802         70 PDPAALAREYEQGGASAISVLTEGRRFLGSLDDFDKVRAAVHIPVLRKDFIVTDYQIWEARAHGADLVLLIVAALD----  145 (695)
T ss_pred             CCHHHHHHHHHHcCCcEEEEecCcCcCCCCHHHHHHHHHhCCCCEEeccccCCHHHHHHHHHcCCCEeehhHhhcC----
Confidence            48999999999999886655421111 123444444444678887532223 357899999999999988777765    


Q ss_pred             CHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHH
Q 021156          171 DLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVA  250 (316)
Q Consensus       171 ~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~  250 (316)
                       ++.++++.+..-    -+.+++-       |-++         ..+.++...+.|++-|-++.++..-.  ..|.+...
T Consensus       146 -~~~l~~l~~~a~----~lGme~L-------vEvh---------~~~el~~a~~~ga~iiGINnRdL~tf--~vd~~~t~  202 (695)
T PRK13802        146 -DAQLKHLLDLAH----ELGMTVL-------VETH---------TREEIERAIAAGAKVIGINARNLKDL--KVDVNKYN  202 (695)
T ss_pred             -HHHHHHHHHHHH----HcCCeEE-------EEeC---------CHHHHHHHHhCCCCEEEEeCCCCccc--eeCHHHHH
Confidence             344555544321    1223331       2111         23556677888999888898887522  35777777


Q ss_pred             HHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHH
Q 021156          251 LLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHA  308 (316)
Q Consensus       251 ~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~  308 (316)
                      +|....  ++.+|+.+||.+.+|+.++.+.|  +++|+||.++  +..+=+-+.+.++..
T Consensus       203 ~L~~~ip~~~~~VsESGI~~~~d~~~l~~~G--~davLIGesl--m~~~dp~~~~~~l~~  258 (695)
T PRK13802        203 ELAADLPDDVIKVAESGVFGAVEVEDYARAG--ADAVLVGEGV--ATADDHELAVERLVK  258 (695)
T ss_pred             HHHhhCCCCcEEEEcCCCCCHHHHHHHHHCC--CCEEEECHHh--hCCCCHHHHHHHHHh
Confidence            776654  46789999999999999999998  9999999999  887644344444443

>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain

Probab=98.26  E-value=1.3e-05  Score=78.48  Aligned_cols=88  Identities=14%  Similarity=0.054  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHcCCCEEEEeecCCcc---------ccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEE
Q 021156          215 LDERVLDFLASYADEFLVHGVDVEG---------KKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDV  285 (316)
Q Consensus       215 ~~e~a~~~~~~Ga~~ilvtdi~~dG---------~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gV  285 (316)
                      ..++++.+++.|++.+-++.-..+.         ...|..++..+.+++.+++||+++||+.+++++.++++.| .++.|
T Consensus       254 ~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~g-~~D~V  332 (382)
T cd02931         254 GLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVDVPVIMAGRMEDPELASEAINEG-IADMI  332 (382)
T ss_pred             HHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHcC-CCCee
Confidence            4578899999999988776433221         1123446788888888999999999999999999999988 59999


Q ss_pred             EEccchhhccCcccHHHHHH
Q 021156          286 TVGSALDIFGGNLAYKDVVA  305 (316)
Q Consensus       286 ivG~Al~~~~g~~~~~~~~~  305 (316)
                      .+||++  ..+|..++++.+
T Consensus       333 ~~gR~~--ladP~l~~k~~~  350 (382)
T cd02931         333 SLGRPL--LADPDVVNKIRR  350 (382)
T ss_pred             eechHh--HhCccHHHHHHc
Confidence            999999  999987777643

Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.

>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]

Probab=98.25  E-value=1.5e-05  Score=75.47  Aligned_cols=145  Identities=25%  Similarity=0.228  Sum_probs=102.7

Q ss_pred             HH-HHHHHHcC-CCEEEeCCeeecCC-----CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHH
Q 021156          145 DN-SLSYIEEG-ATHVIVTSYVFNNG-----QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDE  217 (316)
Q Consensus       145 e~-~~~~l~~G-ad~VVigt~~~~~~-----~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e  217 (316)
                      +| +..+-+++ ||.+.++-..-+.+     ..+++.+.++.+.. ++..-+.+=+|         ..=    ..-+..+
T Consensus       112 ~d~~~~~~~~~~ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~v-k~~~~~Pv~vK---------l~P----~~~di~~  177 (310)
T COG0167         112 ADYARLLEEAGDADAIELNISCPNTPGGRALGQDPELLEKLLEAV-KAATKVPVFVK---------LAP----NITDIDE  177 (310)
T ss_pred             HHHHHHHHhcCCCCEEEEEccCCCCCChhhhccCHHHHHHHHHHH-HhcccCceEEE---------eCC----CHHHHHH
Confidence            44 44444567 89988876554421     12588888888776 34444444443         211    1125788


Q ss_pred             HHHHHHHcCCCEEEEeecCCc-----------------cccCCC-----CHHHHHHHhhcCC--CcEEEEeCCCCHHHHH
Q 021156          218 RVLDFLASYADEFLVHGVDVE-----------------GKKLGI-----DDELVALLGKYSP--IPVTYAGGVTTMADLE  273 (316)
Q Consensus       218 ~a~~~~~~Ga~~ilvtdi~~d-----------------G~~~G~-----d~eli~~l~~~~~--iPVIasGGI~s~eDi~  273 (316)
                      .|+.+.+.|++.++++.-..+                 |-++|+     -+++++++.+.++  +|+|..|||.|.+|+.
T Consensus       178 iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~ipIIGvGGI~s~~DA~  257 (310)
T COG0167         178 IAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIGVGGIETGEDAL  257 (310)
T ss_pred             HHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCCCcEEEecCcCcHHHHH
Confidence            999999999999876552221                 233454     4567888888765  9999999999999999


Q ss_pred             HHHHhCCCcCEEEEccchhhccCcccHHHHHHH
Q 021156          274 KIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAW  306 (316)
Q Consensus       274 ~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~  306 (316)
                      +.+.+|  ++.|-|++|+ +|.|+.-++++.+-
T Consensus       258 E~i~aG--A~~vQv~Tal-~~~Gp~i~~~I~~~  287 (310)
T COG0167         258 EFILAG--ASAVQVGTAL-IYKGPGIVKEIIKG  287 (310)
T ss_pred             HHHHcC--Cchheeeeee-eeeCchHHHHHHHH
Confidence            999999  8999999999 67789888887663

>PRK04302 triosephosphate isomerase; Provisional

Probab=98.25  E-value=2.9e-05  Score=70.33  Aligned_cols=131  Identities=16%  Similarity=0.117  Sum_probs=82.3

Q ss_pred             HHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcC
Q 021156          147 SLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASY  226 (316)
Q Consensus       147 ~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~G  226 (316)
                      ++.+.++|++.|+++-.-+..   ..+.+.+..+..-...+.+-+++.                   + .+.++.+.+.+
T Consensus        78 ~~~l~~~G~~~vii~~ser~~---~~~e~~~~v~~a~~~Gl~~I~~v~-------------------~-~~~~~~~~~~~  134 (223)
T PRK04302         78 PEAVKDAGAVGTLINHSERRL---TLADIEAVVERAKKLGLESVVCVN-------------------N-PETSAAAAALG  134 (223)
T ss_pred             HHHHHHcCCCEEEEecccccc---CHHHHHHHHHHHHHCCCeEEEEcC-------------------C-HHHHHHHhcCC
Confidence            888888999999998742222   133344444332111111112321                   1 23455667778


Q ss_pred             CCEEEEeecCCccccCC---CCHH----HHHHHhhc-CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcc
Q 021156          227 ADEFLVHGVDVEGKKLG---IDDE----LVALLGKY-SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNL  298 (316)
Q Consensus       227 a~~ilvtdi~~dG~~~G---~d~e----li~~l~~~-~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~  298 (316)
                      .+.+-|..+..-|+..+   .+.+    .++.+++. .++||+++|||++.+++.++++.|  ++||+||+|+  ..- =
T Consensus       135 ~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~g--adGvlVGsa~--l~~-~  209 (223)
T PRK04302        135 PDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGEDVKAALELG--ADGVLLASGV--VKA-K  209 (223)
T ss_pred             CCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCC--CCEEEEehHH--hCC-c
Confidence            88777777655565444   2222    34445553 368999999999999999999988  9999999999  643 3


Q ss_pred             cHHHHHH
Q 021156          299 AYKDVVA  305 (316)
Q Consensus       299 ~~~~~~~  305 (316)
                      ++.++.+
T Consensus       210 ~~~~~~~  216 (223)
T PRK04302        210 DPEAALR  216 (223)
T ss_pred             CHHHHHH
Confidence            4544443

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=98.24  E-value=4.3e-05  Score=76.70  Aligned_cols=172  Identities=17%  Similarity=0.138  Sum_probs=107.2

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCC---cccHHHHHHHHHh-----CCCcEEEecCCC----H-HHHHHHHHcCCCEEE
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGAD---PLSKAAAIEALHA-----YPGGLQVGGGIN----S-DNSLSYIEEGATHVI  159 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~---~~~~~~i~~~v~~-----~~~pl~vGGGIr----~-e~~~~~l~~Gad~VV  159 (316)
                      .+..++.+.+.+.+...+-++|=++.   -.....+.+....     ....+.||.-+.    . +-++.+.++|++.++
T Consensus       163 ~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~~~~~d~~grl~Vgaav~~~~~~~~ra~~Lv~aGVd~i~  242 (475)
T TIGR01303       163 TEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIYTPATDAAGRLRIGAAVGINGDVGGKAKALLDAGVDVLV  242 (475)
T ss_pred             CcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhCCchhhhccCceehheeeeCccHHHHHHHHHHhCCCEEE
Confidence            34556777777888887777763332   1122333332211     112455666552    2 558999999999999


Q ss_pred             eCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEE--------
Q 021156          160 VTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFL--------  231 (316)
Q Consensus       160 igt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~il--------  231 (316)
                      ++++- .+.+.-.+.++++.+.|. +..++ .+.                   ....+-++.+.+.|++.|-        
T Consensus       243 ~D~a~-g~~~~~~~~i~~i~~~~~-~~~vi-~g~-------------------~~t~~~~~~l~~~G~d~i~vg~g~Gs~  300 (475)
T TIGR01303       243 IDTAH-GHQVKMISAIKAVRALDL-GVPIV-AGN-------------------VVSAEGVRDLLEAGANIIKVGVGPGAM  300 (475)
T ss_pred             EeCCC-CCcHHHHHHHHHHHHHCC-CCeEE-Eec-------------------cCCHHHHHHHHHhCCCEEEECCcCCcc
Confidence            99986 432222356666666663 22211 121                   1234788899999999875        


Q ss_pred             EeecCCccccCCC-----CHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          232 VHGVDVEGKKLGI-----DDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       232 vtdi~~dG~~~G~-----d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      +|....  +.-|.     +++..+.+++ .++|||+.|||++..|+.+++.+|  ++.||+|+.+
T Consensus       301 ~ttr~~--~~~g~~~~~a~~~~~~~~~~-~~~~viadGgi~~~~di~kala~G--A~~vm~g~~~  360 (475)
T TIGR01303       301 CTTRMM--TGVGRPQFSAVLECAAEARK-LGGHVWADGGVRHPRDVALALAAG--ASNVMVGSWF  360 (475)
T ss_pred             ccCccc--cCCCCchHHHHHHHHHHHHH-cCCcEEEeCCCCCHHHHHHHHHcC--CCEEeechhh
Confidence            333222  22222     3333333333 389999999999999999999999  8999999987

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2

Probab=98.23  E-value=8.2e-05  Score=65.08  Aligned_cols=160  Identities=20%  Similarity=0.174  Sum_probs=107.8

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCcc----cHHHHHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCC
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADPL----SKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQ  169 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~~----~~~~i~~~v~~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~  169 (316)
                      +-.+.+....+.|++.+++=+=+....    --..+.+.++..+.++++..     +.+-+.+.||+.|=++.....   
T Consensus        13 ~~~~~l~~~~~~gv~~v~lR~k~~~~~~~~~~a~~l~~~~~~~~~~liin~-----~~~la~~~~~dGvHl~~~~~~---   84 (180)
T PF02581_consen   13 DFLEQLEAALAAGVDLVQLREKDLSDEELLELARRLAELCQKYGVPLIIND-----RVDLALELGADGVHLGQSDLP---   84 (180)
T ss_dssp             HHHHHHHHHHHTT-SEEEEE-SSS-HHHHHHHHHHHHHHHHHTTGCEEEES------HHHHHHCT-SEEEEBTTSSS---
T ss_pred             hHHHHHHHHHHCCCcEEEEcCCCCCccHHHHHHHHHHHHhhcceEEEEecC-----CHHHHHhcCCCEEEecccccc---
Confidence            455677777778888877777554322    12334455556778899887     666777899999988874433   


Q ss_pred             CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeec----CCccccCCCC
Q 021156          170 MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGV----DVEGKKLGID  245 (316)
Q Consensus       170 ~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi----~~dG~~~G~d  245 (316)
                        +   .+..+.++++. +++..+.                   +. +.++++.+.|++.+.+-.+    ++.+. ....
T Consensus        85 --~---~~~r~~~~~~~-~ig~S~h-------------------~~-~e~~~a~~~g~dYv~~gpvf~T~sk~~~-~~~g  137 (180)
T PF02581_consen   85 --P---AEARKLLGPDK-IIGASCH-------------------SL-EEAREAEELGADYVFLGPVFPTSSKPGA-PPLG  137 (180)
T ss_dssp             --H---HHHHHHHTTTS-EEEEEES-------------------SH-HHHHHHHHCTTSEEEEETSS--SSSSS--TTCH
T ss_pred             --h---HHhhhhcccce-EEEeecC-------------------cH-HHHHHhhhcCCCEEEECCccCCCCCccc-cccC
Confidence              3   34444454444 4677663                   23 3488888999999987555    33333 4458


Q ss_pred             HHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          246 DELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       246 ~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      ++.++++++..++||++-||| +.+++..+.+.|  ++||.+-+|+
T Consensus       138 ~~~l~~~~~~~~~pv~AlGGI-~~~~i~~l~~~G--a~gvAvi~aI  180 (180)
T PF02581_consen  138 LDGLREIARASPIPVYALGGI-TPENIPELREAG--ADGVAVISAI  180 (180)
T ss_dssp             HHHHHHHHHHTSSCEEEESS---TTTHHHHHHTT---SEEEESHHH
T ss_pred             HHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHHcC--CCEEEEEeeC
Confidence            899999999889999999999 679999999998  8999887764

5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....

>PRK08745 ribulose-phosphate 3-epimerase; Provisional

Probab=98.23  E-value=0.00049  Score=62.56  Aligned_cols=182  Identities=19%  Similarity=0.154  Sum_probs=119.1

Q ss_pred             HHHHHHHHcCCCcceEEEecCCc-cc---HHHHHHHHHh--CCCcEEEecCC-CH-HHHHHHHHcCCCEEEeCCeeecCC
Q 021156           97 EFANLYKEDGLTGGHAIMLGADP-LS---KAAAIEALHA--YPGGLQVGGGI-NS-DNSLSYIEEGATHVIVTSYVFNNG  168 (316)
Q Consensus        97 e~a~~~~~~G~~~l~lvDLda~~-~~---~~~i~~~v~~--~~~pl~vGGGI-r~-e~~~~~l~~Gad~VVigt~~~~~~  168 (316)
                      +-++.+.+.|++++|+==+|+.. +|   -+.+++.+++  .+.|+.|===+ +. .-++.+.++||+.+.+-.+.-.+ 
T Consensus        20 ~~i~~l~~~g~d~lHiDimDG~FVPN~tfg~~~i~~lr~~~~~~~~dvHLMv~~P~~~i~~~~~~gad~I~~H~Ea~~~-   98 (223)
T PRK08745         20 EEVDNVLKAGADWVHFDVMDNHYVPNLTIGPMVCQALRKHGITAPIDVHLMVEPVDRIVPDFADAGATTISFHPEASRH-   98 (223)
T ss_pred             HHHHHHHHcCCCEEEEecccCccCCCcccCHHHHHHHHhhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEcccCccc-
Confidence            45556666799999998888763 22   2345555654  35664332223 45 44889999999999998886554 


Q ss_pred             CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHH
Q 021156          169 QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDEL  248 (316)
Q Consensus       169 ~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~el  248 (316)
                         +..+-+..+..| -+.-+++...                   .+.+..+.+.+ -++.+++..++-....+.+..+.
T Consensus        99 ---~~~~l~~Ir~~g-~k~GlalnP~-------------------T~~~~i~~~l~-~vD~VlvMtV~PGf~GQ~fi~~~  154 (223)
T PRK08745         99 ---VHRTIQLIKSHG-CQAGLVLNPA-------------------TPVDILDWVLP-ELDLVLVMSVNPGFGGQAFIPSA  154 (223)
T ss_pred             ---HHHHHHHHHHCC-CceeEEeCCC-------------------CCHHHHHHHHh-hcCEEEEEEECCCCCCccccHHH
Confidence               644444445566 3444444331                   23455556655 48999999988766666665444


Q ss_pred             HHH---Hhhc-----CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHHh
Q 021156          249 VAL---LGKY-----SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       249 i~~---l~~~-----~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~~  309 (316)
                      +++   +++.     .++.+.+-|||. .+.+..+.++|  ++.+++|+++  |... ++++..+..++
T Consensus       155 l~KI~~l~~~~~~~~~~~~IeVDGGI~-~eti~~l~~aG--aDi~V~GSai--F~~~-d~~~~~~~lr~  217 (223)
T PRK08745        155 LDKLRAIRKKIDALGKPIRLEIDGGVK-ADNIGAIAAAG--ADTFVAGSAI--FNAP-DYAQVIAQMRA  217 (223)
T ss_pred             HHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcC--CCEEEEChhh--hCCC-CHHHHHHHHHH
Confidence            433   3332     246699999998 68999999998  8999999999  7432 46666554443

>PRK13125 trpA tryptophan synthase subunit alpha; Provisional

Probab=98.23  E-value=9.8e-05  Score=67.85  Aligned_cols=157  Identities=14%  Similarity=0.133  Sum_probs=95.1

Q ss_pred             HHHHHH-hCCCcEEEec----CC-CHHH-HHHHHHcCCCEEEeCCeee---cCCCCCHHHHHHHHHHhcCceEEEeeeee
Q 021156          125 AIEALH-AYPGGLQVGG----GI-NSDN-SLSYIEEGATHVIVTSYVF---NNGQMDLERLKDLVRVVGKQRLVLDLSCR  194 (316)
Q Consensus       125 i~~~v~-~~~~pl~vGG----GI-r~e~-~~~~l~~Gad~VVigt~~~---~~~~~~~eli~ei~~~~G~~~IvvslD~k  194 (316)
                      +.+.++ .+++|+.+=+    -+ +.++ ++.+.++|++.+++=...+   ++    ++.+.+..+++|- +.++.+.-.
T Consensus        65 ~v~~vr~~~~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~----~~~~~~~~~~~Gl-~~~~~v~p~  139 (244)
T PRK13125         65 LLEEVRKDVSVPIILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPDD----LEKYVEIIKNKGL-KPVFFTSPK  139 (244)
T ss_pred             HHHHHhccCCCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHHH----HHHHHHHHHHcCC-CEEEEECCC
Confidence            444444 3678874311    12 3455 8889999999999864332   22    4444455566663 334444321


Q ss_pred             ecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCC--C-HHHHHHHhhcC-CCcEEEEeCCCCHH
Q 021156          195 KKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGI--D-DELVALLGKYS-PIPVTYAGGVTTMA  270 (316)
Q Consensus       195 ~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~--d-~eli~~l~~~~-~iPVIasGGI~s~e  270 (316)
                                         .+.+.++.+.+. .+.++|..+.. |+.+.+  + .+.++++++.. +.|+++.|||++.+
T Consensus       140 -------------------T~~e~l~~~~~~-~~~~l~msv~~-~~g~~~~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e  198 (244)
T PRK13125        140 -------------------FPDLLIHRLSKL-SPLFIYYGLRP-ATGVPLPVSVERNIKRVRNLVGNKYLVVGFGLDSPE  198 (244)
T ss_pred             -------------------CCHHHHHHHHHh-CCCEEEEEeCC-CCCCCchHHHHHHHHHHHHhcCCCCEEEeCCcCCHH
Confidence                               234566666665 44455444421 222223  3 23666777665 57999999999999


Q ss_pred             HHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHHh
Q 021156          271 DLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       271 Di~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~~  309 (316)
                      ++.++.+.|  ++++++|+++|..-+.-.++++.++++.
T Consensus       199 ~i~~~~~~g--aD~vvvGSai~~~~~~~~~~~~~~~~~~  235 (244)
T PRK13125        199 DARDALSAG--ADGVVVGTAFIEELEKNGVESALNLLKK  235 (244)
T ss_pred             HHHHHHHcC--CCEEEECHHHHHHHHhcCHHHHHHHHHH
Confidence            999999998  9999999999321011125666666654

>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=98.20  E-value=0.00011  Score=65.06  Aligned_cols=158  Identities=16%  Similarity=0.125  Sum_probs=106.7

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHhCCCcEEEecCC-C-HHHHHHHHHcCCCEEEeCCeeecCCCCC
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAYPGGLQVGGGI-N-SDNSLSYIEEGATHVIVTSYVFNNGQMD  171 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~~~pl~vGGGI-r-~e~~~~~l~~Gad~VVigt~~~~~~~~~  171 (316)
                      +..++++...+.|++.+.+-+=+.   ...+.++.+++..--+.+|+|. - .++++.++++||+.++++...       
T Consensus        25 ~~~~~~~~~~~~Gv~~vqlr~k~~---~~~e~~~~~~~~~~~~~~g~gtvl~~d~~~~A~~~gAdgv~~p~~~-------   94 (187)
T PRK07455         25 LGLQMAEAVAAGGMRLIEITWNSD---QPAELISQLREKLPECIIGTGTILTLEDLEEAIAAGAQFCFTPHVD-------   94 (187)
T ss_pred             HHHHHHHHHHHCCCCEEEEeCCCC---CHHHHHHHHHHhCCCcEEeEEEEEcHHHHHHHHHcCCCEEECCCCC-------
Confidence            455677777778888777775443   3344555555322124466555 3 588999999999999998854       


Q ss_pred             HHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHH
Q 021156          172 LERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVAL  251 (316)
Q Consensus       172 ~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~  251 (316)
                      ++. .+..+..+.. .++.  +                   .++ +.+.+..+.|++.+-+..-   .+..  ..+.++.
T Consensus        95 ~~~-~~~~~~~~~~-~i~G--~-------------------~t~-~e~~~A~~~Gadyv~~Fpt---~~~~--G~~~l~~  145 (187)
T PRK07455         95 PEL-IEAAVAQDIP-IIPG--A-------------------LTP-TEIVTAWQAGASCVKVFPV---QAVG--GADYIKS  145 (187)
T ss_pred             HHH-HHHHHHcCCC-EEcC--c-------------------CCH-HHHHHHHHCCCCEEEECcC---Cccc--CHHHHHH
Confidence            333 3444545421 1122  1                   123 4466777899998866332   1222  4567889


Q ss_pred             HhhcC-CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhcc
Q 021156          252 LGKYS-PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFG  295 (316)
Q Consensus       252 l~~~~-~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~  295 (316)
                      +++.. ++|+++.||| +.+++.++++.|  +++|.+++++  +.
T Consensus       146 ~~~~~~~ipvvaiGGI-~~~n~~~~l~aG--a~~vav~s~i--~~  185 (187)
T PRK07455        146 LQGPLGHIPLIPTGGV-TLENAQAFIQAG--AIAVGLSGQL--FP  185 (187)
T ss_pred             HHhhCCCCcEEEeCCC-CHHHHHHHHHCC--CeEEEEehhc--cc
Confidence            88776 6999999999 669999999998  9999999999  64

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.19  E-value=5.6e-05  Score=76.43  Aligned_cols=176  Identities=17%  Similarity=0.146  Sum_probs=116.3

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCC--c-ccHHHHHHH------HHhCCCcEEEecCCCH----HHHHHHHHcCCCEEE
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGAD--P-LSKAAAIEA------LHAYPGGLQVGGGINS----DNSLSYIEEGATHVI  159 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~--~-~~~~~i~~~------v~~~~~pl~vGGGIr~----e~~~~~l~~Gad~VV  159 (316)
                      .+..+..+.+.+.+...+-++|=++.  . .....+.+.      .+.-...+.||.++..    +.++.+.++|+|.++
T Consensus       180 ~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~~~P~a~~d~~grL~V~~av~~~~~~~ra~~Lv~aGvd~i~  259 (502)
T PRK07107        180 TTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHKENPLELLDSSKRYVVGAGINTRDYAERVPALVEAGADVLC  259 (502)
T ss_pred             CcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcccChhhhhhhccCeeeeeccChhhHHHHHHHHHHhCCCeEe
Confidence            45557777788888998888875432  0 111112111      1112357889999952    558899999999999


Q ss_pred             eCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEE--e----
Q 021156          160 VTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLV--H----  233 (316)
Q Consensus       160 igt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilv--t----  233 (316)
                      |+++--.+ +.-.+.++++.+.|+ ..    +++.  .|             .+-..+.++.+.+.|++.+.+  +    
T Consensus       260 vd~a~g~~-~~~~~~i~~ir~~~~-~~----~~V~--aG-------------nV~t~e~a~~li~aGAd~I~vg~g~Gs~  318 (502)
T PRK07107        260 IDSSEGYS-EWQKRTLDWIREKYG-DS----VKVG--AG-------------NVVDREGFRYLAEAGADFVKVGIGGGSI  318 (502)
T ss_pred             ecCccccc-HHHHHHHHHHHHhCC-CC----ceEE--ec-------------cccCHHHHHHHHHcCCCEEEECCCCCcC
Confidence            98554331 111467788877774 22    3332  22             112347888999999998865  1    


Q ss_pred             ecCCccccCCC-CHHHHHHHhhcC-------C--CcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          234 GVDVEGKKLGI-DDELVALLGKYS-------P--IPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       234 di~~dG~~~G~-d~eli~~l~~~~-------~--iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      ..+|.-+.-|+ -+..+.++++..       +  +|||+-|||++..|+.+++.+|  ++.||+|+.+
T Consensus       319 c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla~G--A~~vm~G~~~  384 (502)
T PRK07107        319 CITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAMG--ADFIMLGRYF  384 (502)
T ss_pred             cccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHHcC--CCeeeeChhh
Confidence            12233344443 566666665532       3  8999999999999999999998  8999999987

>PRK08649 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.19  E-value=3.8e-05  Score=74.70  Aligned_cols=137  Identities=20%  Similarity=0.270  Sum_probs=86.2

Q ss_pred             HHhCCCcEEEecCC-CH-HHHHHHHHcCCCEEEeCCee----ecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEE
Q 021156          129 LHAYPGGLQVGGGI-NS-DNSLSYIEEGATHVIVTSYV----FNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAI  202 (316)
Q Consensus       129 v~~~~~pl~vGGGI-r~-e~~~~~l~~Gad~VVigt~~----~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v  202 (316)
                      +++..+++.+.-.- .. +-++.+.++|+|.+++....    +..+.-+++.+.++.+.++ -.|++ =++         
T Consensus       127 ~~~~~V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~-ipVIa-G~V---------  195 (368)
T PRK08649        127 IRDAGVIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELD-VPVIV-GGC---------  195 (368)
T ss_pred             HHhCeEEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHCC-CCEEE-eCC---------
Confidence            33334555554433 34 66899999999999994322    1111113777777777653 11211 111         


Q ss_pred             EeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCcc------ccCCCCHHH---HHHHhhc----------CCCcEEEE
Q 021156          203 VTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEG------KKLGIDDEL---VALLGKY----------SPIPVTYA  263 (316)
Q Consensus       203 ~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG------~~~G~d~el---i~~l~~~----------~~iPVIas  263 (316)
                                 ...+.++.+.+.|++.+.+ .+.. |      ...|.....   +.+.++.          .++|||+.
T Consensus       196 -----------~t~e~A~~l~~aGAD~V~V-G~G~-Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAd  262 (368)
T PRK08649        196 -----------VTYTTALHLMRTGAAGVLV-GIGP-GAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIAD  262 (368)
T ss_pred             -----------CCHHHHHHHHHcCCCEEEE-CCCC-CcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEe
Confidence                       2246788888999999865 3322 2      123333333   3333221          15899999


Q ss_pred             eCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          264 GGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       264 GGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      |||++..|+.+++.+|  +++|++|+++
T Consensus       263 GGI~~~~diakAlalG--Ad~Vm~Gs~f  288 (368)
T PRK08649        263 GGIGTSGDIAKAIACG--ADAVMLGSPL  288 (368)
T ss_pred             CCCCCHHHHHHHHHcC--CCeecccchh
Confidence            9999999999999998  9999999988

>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP)

Probab=98.18  E-value=0.00028  Score=62.85  Aligned_cols=183  Identities=21%  Similarity=0.153  Sum_probs=115.9

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCcc-c-HHHHHHHHHhCC-----CcEEEecCCCHHHHHH-HHHcCCCEEEeCCeee
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADPL-S-KAAAIEALHAYP-----GGLQVGGGINSDNSLS-YIEEGATHVIVTSYVF  165 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~~-~-~~~i~~~v~~~~-----~pl~vGGGIr~e~~~~-~l~~Gad~VVigt~~~  165 (316)
                      ++. -++...+.|++.+.++.-+..+. . .....++.+.++     +++.+.-  +.+++.. +.+.|+|.|=++..  
T Consensus         8 ~~e-d~~~a~~~Gvd~ig~i~~~~s~R~v~~~~a~~l~~~~~~~~~~V~v~vn~--~~~~i~~ia~~~~~d~Vqlhg~--   82 (203)
T cd00405           8 TLE-DALAAAEAGADAIGFIFAPKSPRYVSPEQAREIVAALPPFVKRVGVFVNE--DLEEILEIAEELGLDVVQLHGD--   82 (203)
T ss_pred             CHH-HHHHHHHcCCCEEEEecCCCCCCCCCHHHHHHHHHhCCCCCcEEEEEeCC--CHHHHHHHHHhcCCCEEEECCC--
Confidence            454 55666688999999997765432 2 333434433332     3333222  2355444 44679999988764  


Q ss_pred             cCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCc---cccC
Q 021156          166 NNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVE---GKKL  242 (316)
Q Consensus       166 ~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~d---G~~~  242 (316)
                      ++    ++.++++.+.+| .+++..+.+.  ..               ...+. ......+++.+++-.-+..   |+..
T Consensus        83 e~----~~~~~~l~~~~~-~~~i~~i~~~--~~---------------~~~~~-~~~~~~~aD~il~dt~~~~~~Gg~g~  139 (203)
T cd00405          83 ES----PEYCAQLRARLG-LPVIKAIRVK--DE---------------EDLEK-AAAYAGEVDAILLDSKSGGGGGGTGK  139 (203)
T ss_pred             CC----HHHHHHHHhhcC-CcEEEEEecC--Ch---------------hhHHH-hhhccccCCEEEEcCCCCCCCCCCcc
Confidence            23    778888887775 4455444442  00               01111 2334568898876332322   2344


Q ss_pred             CCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHH
Q 021156          243 GIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHA  308 (316)
Q Consensus       243 G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~  308 (316)
                      .+||++++++.  .++|++++||+ +++.+.++++.+ ..+|+-+++++....|.-+++.+.++++
T Consensus       140 ~~~~~~l~~~~--~~~PvilaGGI-~~~Nv~~~i~~~-~~~gvdv~S~ie~~pg~kd~~ki~~~~~  201 (203)
T cd00405         140 TFDWSLLRGLA--SRKPVILAGGL-TPDNVAEAIRLV-RPYGVDVSSGVETSPGIKDPEKIRAFIE  201 (203)
T ss_pred             eEChHHhhccc--cCCCEEEECCC-ChHHHHHHHHhc-CCCEEEcCCcccCCCCCcCHHHHHHHHH
Confidence            56999998876  57899999999 899999999986 3799999999922225677777777665

Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.

>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=98.18  E-value=4.2e-05  Score=72.88  Aligned_cols=167  Identities=16%  Similarity=0.061  Sum_probs=106.8

Q ss_pred             HHHHHHHHcC-CCcceE-EEecCCcccHHHHHHHHH-hCCCcEEEecCCCH---HHHHHHHH--cCCCEEEeCCeeecCC
Q 021156           97 EFANLYKEDG-LTGGHA-IMLGADPLSKAAAIEALH-AYPGGLQVGGGINS---DNSLSYIE--EGATHVIVTSYVFNNG  168 (316)
Q Consensus        97 e~a~~~~~~G-~~~l~l-vDLda~~~~~~~i~~~v~-~~~~pl~vGGGIr~---e~~~~~l~--~Gad~VVigt~~~~~~  168 (316)
                      ++|..+++.| +.-+|= .++    ..+....+.++ .....+.|.=|++.   +.++.+++  +|+|.++|+++-=.+ 
T Consensus        61 ~mA~~la~~g~~~~iHk~~~~----e~~~~fv~~~~~~~~~~~~vavG~~~~d~er~~~L~~~~~g~D~iviD~AhGhs-  135 (346)
T PRK05096         61 EMAKALASFDILTAVHKHYSV----EEWAAFVNNSSADVLKHVMVSTGTSDADFEKTKQILALSPALNFICIDVANGYS-  135 (346)
T ss_pred             HHHHHHHHCCCeEEEecCCCH----HHHHHHHHhccccccceEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCcH-
Confidence            7999999987 322221 111    11222222233 22345777888873   55888888  499999999875332 


Q ss_pred             CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEE------eecCCccccC
Q 021156          169 QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLV------HGVDVEGKKL  242 (316)
Q Consensus       169 ~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilv------tdi~~dG~~~  242 (316)
                      +.-.+.++++.+.|+ +..++.=.                    +-..+.++.+.+.|++.+-+      ...++.-+.-
T Consensus       136 ~~~i~~ik~ik~~~P-~~~vIaGN--------------------V~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGv  194 (346)
T PRK05096        136 EHFVQFVAKAREAWP-DKTICAGN--------------------VVTGEMVEELILSGADIVKVGIGPGSVCTTRVKTGV  194 (346)
T ss_pred             HHHHHHHHHHHHhCC-CCcEEEec--------------------ccCHHHHHHHHHcCCCEEEEcccCCccccCcccccc
Confidence            112467777777774 32222211                    12347889999999998731      1123333333


Q ss_pred             CC-CHHHHHHHh---hcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          243 GI-DDELVALLG---KYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       243 G~-d~eli~~l~---~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      |. -+..+.+.+   ...++|||+-|||++.-|+.+.+.+|  ++.||+|+.+
T Consensus       195 G~PQltAV~~~a~~a~~~gvpiIADGGi~~sGDI~KAlaaG--Ad~VMlGsll  245 (346)
T PRK05096        195 GYPQLSAVIECADAAHGLGGQIVSDGGCTVPGDVAKAFGGG--ADFVMLGGML  245 (346)
T ss_pred             ChhHHHHHHHHHHHHHHcCCCEEecCCcccccHHHHHHHcC--CCEEEeChhh
Confidence            43 445555543   44689999999999999999999998  8999999987

>PRK08005 epimerase; Validated

Probab=98.17  E-value=0.00053  Score=61.73  Aligned_cols=178  Identities=13%  Similarity=0.100  Sum_probs=117.3

Q ss_pred             HHHHHHHHcCCCcceEEEecCCc-cc---HHHHHHHHHh-CCCcEEEecCCC-HHH-HHHHHHcCCCEEEeCCeeecCCC
Q 021156           97 EFANLYKEDGLTGGHAIMLGADP-LS---KAAAIEALHA-YPGGLQVGGGIN-SDN-SLSYIEEGATHVIVTSYVFNNGQ  169 (316)
Q Consensus        97 e~a~~~~~~G~~~l~lvDLda~~-~~---~~~i~~~v~~-~~~pl~vGGGIr-~e~-~~~~l~~Gad~VVigt~~~~~~~  169 (316)
                      +.++.+.++|++++|+==+|+.. +|   -+.+++.+++ .+.|+-|===+. .++ ++.+.++||+.+.+-.++..+  
T Consensus        17 ~el~~l~~~g~d~lHiDvMDG~FVPN~tfG~~~i~~l~~~t~~~~DvHLMv~~P~~~i~~~~~~gad~It~H~Ea~~~--   94 (210)
T PRK08005         17 EALTALHDAPLGSLHLDIEDTSFINNITFGMKTIQAVAQQTRHPLSFHLMVSSPQRWLPWLAAIRPGWIFIHAESVQN--   94 (210)
T ss_pred             HHHHHHHHCCCCEEEEeccCCCcCCccccCHHHHHHHHhcCCCCeEEEeccCCHHHHHHHHHHhCCCEEEEcccCccC--
Confidence            45566677899999987788763 22   2334555543 455644333333 544 889999999999998887655  


Q ss_pred             CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHH
Q 021156          170 MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELV  249 (316)
Q Consensus       170 ~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli  249 (316)
                        +..+-+..++.| -+.-+++...                   .+.+.++.+.+ -++.+++..++-.-..+.+..+.+
T Consensus        95 --~~~~l~~Ik~~G-~k~GlAlnP~-------------------Tp~~~i~~~l~-~vD~VlvMsV~PGf~GQ~f~~~~~  151 (210)
T PRK08005         95 --PSEILADIRAIG-AKAGLALNPA-------------------TPLLPYRYLAL-QLDALMIMTSEPDGRGQQFIAAMC  151 (210)
T ss_pred             --HHHHHHHHHHcC-CcEEEEECCC-------------------CCHHHHHHHHH-hcCEEEEEEecCCCccceecHHHH
Confidence              644444445566 3444555431                   23455555555 489999999877655666766555


Q ss_pred             HHHh---hcC-CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156          250 ALLG---KYS-PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVA  305 (316)
Q Consensus       250 ~~l~---~~~-~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~  305 (316)
                      ++++   +.. ...+.+=|||+ .+.+..+.++|  ++.+++|+++  |... ++++.++
T Consensus       152 ~KI~~l~~~~~~~~I~VDGGI~-~~~i~~l~~aG--ad~~V~Gsai--F~~~-d~~~~~~  205 (210)
T PRK08005        152 EKVSQSREHFPAAECWADGGIT-LRAARLLAAAG--AQHLVIGRAL--FTTA-NYDVTLS  205 (210)
T ss_pred             HHHHHHHHhcccCCEEEECCCC-HHHHHHHHHCC--CCEEEEChHh--hCCC-CHHHHHH
Confidence            5554   332 23699999998 57899999998  8999999999  7533 4555443

>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1

Probab=98.17  E-value=2.5e-05  Score=74.88  Aligned_cols=74  Identities=19%  Similarity=0.257  Sum_probs=57.1

Q ss_pred             HHHHHHHHHcCCCEEEEeecCCccccC-CCC--HHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          216 DERVLDFLASYADEFLVHGVDVEGKKL-GID--DELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       216 ~e~a~~~~~~Ga~~ilvtdi~~dG~~~-G~d--~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      .+.++.+.+.|+|.+++...+.-|+.. ...  +.++.++++.+++|||++|||.+-+++..++.+|  ++||.+|+.+
T Consensus       146 ~~~A~~a~~~G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~~iPViaAGGI~dg~~iaaal~lG--A~gV~~GTrF  222 (330)
T PF03060_consen  146 VREARKAAKAGADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAVDIPVIAAGGIADGRGIAAALALG--ADGVQMGTRF  222 (330)
T ss_dssp             HHHHHHHHHTT-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH-SS-EEEESS--SHHHHHHHHHCT---SEEEESHHH
T ss_pred             HHHHHHhhhcCCCEEEEeccccCCCCCccccceeeHHHHHhhhcCCcEEEecCcCCHHHHHHHHHcC--CCEeecCCeE
Confidence            467889999999999999888766654 223  6688899999999999999999999999999999  9999999988

13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.

>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic

Probab=98.16  E-value=3.5e-05  Score=73.44  Aligned_cols=177  Identities=18%  Similarity=0.082  Sum_probs=114.1

Q ss_pred             HHHHHHHHcC-CCcceE-EEecCCcccHHHHHHHH-HhCCCcEEEecCCCH---HHHHHHHHcC--CCEEEeCCeeecCC
Q 021156           97 EFANLYKEDG-LTGGHA-IMLGADPLSKAAAIEAL-HAYPGGLQVGGGINS---DNSLSYIEEG--ATHVIVTSYVFNNG  168 (316)
Q Consensus        97 e~a~~~~~~G-~~~l~l-vDLda~~~~~~~i~~~v-~~~~~pl~vGGGIr~---e~~~~~l~~G--ad~VVigt~~~~~~  168 (316)
                      ++|..+++.| +.-+|= .+++    .+....+.+ +.....+.+.=|++.   +.++.++++|  +|.++|+++-=.+ 
T Consensus        60 ~mA~~la~~g~~~~iHk~~~~e----~~~~~v~~~~~~~~~~~~vsvG~~~~d~er~~~L~~a~~~~d~iviD~AhGhs-  134 (343)
T TIGR01305        60 EMAAALSQHSIFTAIHKHYSVD----EWKAFATNSSPDCLQNVAVSSGSSDNDLEKMTSILEAVPQLKFICLDVANGYS-  134 (343)
T ss_pred             HHHHHHHHCCCeEEEeeCCCHH----HHHHHHHhhcccccceEEEEeccCHHHHHHHHHHHhcCCCCCEEEEECCCCcH-
Confidence            6899999987 332222 1111    112222222 223345677888873   6688999985  9999999874332 


Q ss_pred             CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEe------ecCCccccC
Q 021156          169 QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVH------GVDVEGKKL  242 (316)
Q Consensus       169 ~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvt------di~~dG~~~  242 (316)
                      +.-.+.++.+.+.|+ +..++.=.                    +-..|.++.+.+.|++.+.+-      ..+|.-+.-
T Consensus       135 ~~~i~~ik~ir~~~p-~~~viaGN--------------------V~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gv  193 (343)
T TIGR01305       135 EHFVEFVKLVREAFP-EHTIMAGN--------------------VVTGEMVEELILSGADIVKVGIGPGSVCTTRTKTGV  193 (343)
T ss_pred             HHHHHHHHHHHhhCC-CCeEEEec--------------------ccCHHHHHHHHHcCCCEEEEcccCCCcccCceeCCC
Confidence            112466777777773 33222211                    123478889999999988532      234443444


Q ss_pred             C-CCHHHHHHHhhc---CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHH
Q 021156          243 G-IDDELVALLGKY---SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDV  303 (316)
Q Consensus       243 G-~d~eli~~l~~~---~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~  303 (316)
                      | |-+..+.++++.   .++|||+=|||++.-|+.+++.+|  ++.||+|+.+  -.+.-.+.++
T Consensus       194 g~pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~G--Ad~VMlG~ll--AG~~Espg~~  254 (343)
T TIGR01305       194 GYPQLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAG--ADFVMLGGMF--AGHTESGGEV  254 (343)
T ss_pred             CcCHHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcC--CCEEEECHhh--hCcCcCccee
Confidence            5 567777776653   478999999999999999999998  8999999777  5554444444

A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.

>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]

Probab=98.14  E-value=1.7e-05  Score=69.83  Aligned_cols=99  Identities=17%  Similarity=0.188  Sum_probs=77.5

Q ss_pred             cEEEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCC----cccHHHHHHHH
Q 021156           54 VRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGAD----PLSKAAAIEAL  129 (316)
Q Consensus        54 ~~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~----~~~~~~i~~~v  129 (316)
                      -++.-++|+++|+.-.  .               .+   +++++..+.++..--.++.++|+++-    .++.+.+....
T Consensus       118 ~r~vvslD~k~~~Ll~--~---------------~~---ed~le~Vk~l~~~~~~~lIvLDi~aVGt~~G~~~E~l~~~~  177 (229)
T COG1411         118 GRIVVSLDVKGGELLG--P---------------WL---EDFLETVKDLNYRRDPGLIVLDIGAVGTKSGPDYELLTKVL  177 (229)
T ss_pred             cceEEEEecCCCeecC--C---------------Cc---hhHHHHHHHHhccCCCCeEEEEccccccccCCCHHHHHHHH
Confidence            5688899999988765  1               12   58999999998888899999999953    24444444444


Q ss_pred             HhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHH
Q 021156          130 HAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLE  173 (316)
Q Consensus       130 ~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~e  173 (316)
                      ....-|+.+||||+ .|+.+.++..|++-|.++|+.++ |..+.+
T Consensus       178 ~~s~~pVllGGGV~g~Edlel~~~~Gv~gvLvaTalh~-G~vple  221 (229)
T COG1411         178 ELSEHPVLLGGGVGGMEDLELLLGMGVSGVLVATALHE-GVVPLE  221 (229)
T ss_pred             HhccCceeecCCcCcHHHHHHHhcCCCceeeehhhhhc-CcCcHH
Confidence            45678999999999 79999999999999999999998 444333

>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain

Probab=98.14  E-value=2.8e-05  Score=75.26  Aligned_cols=149  Identities=15%  Similarity=0.040  Sum_probs=97.1

Q ss_pred             HHHHHHHcCCCEEEeCCe-----------eec---C---------CCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEE
Q 021156          146 NSLSYIEEGATHVIVTSY-----------VFN---N---------GQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAI  202 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~-----------~~~---~---------~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v  202 (316)
                      .++++.++|+|-|=|-.+           ..+   |         .++..+.++.+.+.+|++ +.+.+  |. +.. ..
T Consensus       142 aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d-~~v~i--Ri-~~~-D~  216 (353)
T cd02930         142 CAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGED-FIIIY--RL-SML-DL  216 (353)
T ss_pred             HHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCC-ceEEE--Ee-ccc-cc
Confidence            466677899999977431           111   1         123447777887878743 22322  11 000 00


Q ss_pred             EeCCcceecccCHHHHHHHHHHcCCCEEEEee-----cCC-cccc--CCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHH
Q 021156          203 VTDRWQKFSDVYLDERVLDFLASYADEFLVHG-----VDV-EGKK--LGIDDELVALLGKYSPIPVTYAGGVTTMADLEK  274 (316)
Q Consensus       203 ~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtd-----i~~-dG~~--~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~  274 (316)
                      ...+|..   .+..++++.+++.|++.+-++.     ... ....  .+...+..+++++.+++||+++|++.+++++.+
T Consensus       217 ~~~g~~~---~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~~~~~a~~  293 (353)
T cd02930         217 VEGGSTW---EEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDIPVIASNRINTPEVAER  293 (353)
T ss_pred             CCCCCCH---HHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCCCEEEcCCCCCHHHHHH
Confidence            0012221   2467889999999999876521     111 1111  122456778899989999999999999999999


Q ss_pred             HHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156          275 IKVAGIGRVDVTVGSALDIFGGNLAYKDVVA  305 (316)
Q Consensus       275 l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~  305 (316)
                      +++.| +++.|.+||++  ..+|..++++++
T Consensus       294 ~i~~g-~~D~V~~gR~~--l~dP~~~~k~~~  321 (353)
T cd02930         294 LLADG-DADMVSMARPF--LADPDFVAKAAA  321 (353)
T ss_pred             HHHCC-CCChhHhhHHH--HHCccHHHHHHh
Confidence            99988 59999999999  999987777653

DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi

>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein

Probab=98.13  E-value=3.1e-05  Score=75.29  Aligned_cols=156  Identities=19%  Similarity=0.067  Sum_probs=104.7

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCC---cccHHHHHHHHHhCCCcEEEecCCCH---HHHHHHHHcCCCEEEeCCeeec
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGAD---PLSKAAAIEALHAYPGGLQVGGGINS---DNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~---~~~~~~i~~~v~~~~~pl~vGGGIr~---e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      .||. ++....++|+.++  +++++-   ..+...+...+...        .-..   +.++.+-+.+++-        .
T Consensus        56 td~~-fr~~~~~~Galgv--vsaegl~~~~~~~~~~~~QI~g~--------~~~~~~a~aa~~~~e~~~~~--------~  116 (369)
T TIGR01304        56 VSPE-FAIELGELGGLGV--LNLEGLWGRHEDPDPAIAKIAEA--------YEEGDQAAATRLLQELHAAP--------L  116 (369)
T ss_pred             cCHH-HHHHHHHcCCccc--ccchHHHhcCCCHHHHHHHHhhc--------CCChHHHHHHHHHHHcCCCc--------c
Confidence            4665 8888889997666  444332   12233333222211        1111   3445555555553        2


Q ss_pred             CCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCcccc-CC-C
Q 021156          167 NGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKK-LG-I  244 (316)
Q Consensus       167 ~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~-~G-~  244 (316)
                      +    |+++.++.++.. +..   +.++       ++.      +..+..++++.+++.|++.+.+|..+++..+ .| -
T Consensus       117 ~----p~l~~~ii~~vr-~a~---Vtvk-------iRl------~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~  175 (369)
T TIGR01304       117 K----PELLGERIAEVR-DSG---VITA-------VRV------SPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSG  175 (369)
T ss_pred             C----hHHHHHHHHHHH-hcc---eEEE-------Eec------CCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCC
Confidence            3    899888888874 332   3333       111      1135789999999999999999998877655 33 3


Q ss_pred             CHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          245 DDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       245 d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      ||..+.++.+..++|||+ |++.+.+++.++++.|  +++|++|+.-
T Consensus       176 ~p~~l~~~i~~~~IPVI~-G~V~t~e~A~~~~~aG--aDgV~~G~gg  219 (369)
T TIGR01304       176 EPLNLKEFIGELDVPVIA-GGVNDYTTALHLMRTG--AAGVIVGPGG  219 (369)
T ss_pred             CHHHHHHHHHHCCCCEEE-eCCCCHHHHHHHHHcC--CCEEEECCCC
Confidence            788888888888999997 8899999999999987  9999988755

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=98.13  E-value=2.4e-05  Score=82.98  Aligned_cols=147  Identities=13%  Similarity=0.074  Sum_probs=97.8

Q ss_pred             HHHHHHcCCCEEEeCCe----------e----ecC---C------CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEE
Q 021156          147 SLSYIEEGATHVIVTSY----------V----FNN---G------QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIV  203 (316)
Q Consensus       147 ~~~~l~~Gad~VVigt~----------~----~~~---~------~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~  203 (316)
                      ++++.++|+|.|=|...          .    ++|   |      ++..|.++.+.+.+|++ ..++  +|.       .
T Consensus       557 A~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~-~~v~--~ri-------~  626 (765)
T PRK08255        557 ARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAE-KPMS--VRI-------S  626 (765)
T ss_pred             HHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCC-CeeE--EEE-------c
Confidence            45666899999988544          1    111   1      23346777777777643 2233  231       1


Q ss_pred             eCCccee--cccCHHHHHHHHHHcCCCEEEEeec-CCcc----ccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHH
Q 021156          204 TDRWQKF--SDVYLDERVLDFLASYADEFLVHGV-DVEG----KKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIK  276 (316)
Q Consensus       204 ~~gw~~~--~~~~~~e~a~~~~~~Ga~~ilvtdi-~~dG----~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~  276 (316)
                      ..+|.+.  +..+..++++.+++.|++.+-++.- ....    ...++..+..+++++.+++||+++|++.+.+++.+++
T Consensus       627 ~~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~i~~~~~a~~~l  706 (765)
T PRK08255        627 AHDWVEGGNTPDDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEAGIATIAVGAISEADHVNSII  706 (765)
T ss_pred             cccccCCCCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHH
Confidence            1223221  1113568899999999998866531 1110    0123456677888888899999999999999999999


Q ss_pred             HhCCCcCEEEEccchhhccCc-ccHHHHHHH
Q 021156          277 VAGIGRVDVTVGSALDIFGGN-LAYKDVVAW  306 (316)
Q Consensus       277 ~~G~g~~gVivG~Al~~~~g~-~~~~~~~~~  306 (316)
                      +.| ++|.|++||++  +.+| |.++.+.++
T Consensus       707 ~~g-~~D~v~~gR~~--l~dP~~~~~~~~~~  734 (765)
T PRK08255        707 AAG-RADLCALARPH--LADPAWTLHEAAEI  734 (765)
T ss_pred             HcC-CcceeeEcHHH--HhCccHHHHHHHHc
Confidence            998 69999999999  9999 777666543

>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional

Probab=98.13  E-value=0.00028  Score=68.16  Aligned_cols=164  Identities=21%  Similarity=0.144  Sum_probs=112.7

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCcc----cHHHHHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCC
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADPL----SKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQ  169 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~~----~~~~i~~~v~~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~  169 (316)
                      +..+.+....+.|+..+++=+=+....    .-..+.+.++..+.++++-.     +++-++..|||.|=+|-....   
T Consensus       158 ~ll~~l~~al~~Gv~~VQLR~K~~~~~~~~~~a~~L~~l~~~~~~~lIIND-----~vdlAl~~~aDGVHLgq~dl~---  229 (347)
T PRK02615        158 NLLEVVEAALKGGVTLVQYRDKTADDRQRLEEAKKLKELCHRYGALFIVND-----RVDIALAVDADGVHLGQEDLP---  229 (347)
T ss_pred             hHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHhCCeEEEeC-----hHHHHHHcCCCEEEeChhhcC---
Confidence            345566666667877666654443221    12234455556677888875     566778889999988764322   


Q ss_pred             CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCcccc---CCCCH
Q 021156          170 MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKK---LGIDD  246 (316)
Q Consensus       170 ~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~---~G~d~  246 (316)
                           +.+..+.+|++++ +++++.                   ++ +.+..+.+.|++.+.+-.+-...+.   ....+
T Consensus       230 -----~~~aR~llg~~~i-IG~S~H-------------------s~-~e~~~A~~~GaDYI~lGPvf~T~tKp~~~~~Gl  283 (347)
T PRK02615        230 -----LAVARQLLGPEKI-IGRSTT-------------------NP-EEMAKAIAEGADYIGVGPVFPTPTKPGKAPAGL  283 (347)
T ss_pred             -----HHHHHHhcCCCCE-EEEecC-------------------CH-HHHHHHHHcCCCEEEECCCcCCCCCCCCCCCCH
Confidence                 2344444665554 666652                   22 4567777889999876555333333   34578


Q ss_pred             HHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccC
Q 021156          247 ELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGG  296 (316)
Q Consensus       247 eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g  296 (316)
                      +.++.+++..++||++-|||. .+++.+++..|  +++|.+++++  +..
T Consensus       284 e~l~~~~~~~~iPv~AiGGI~-~~ni~~l~~~G--a~gVAvisaI--~~a  328 (347)
T PRK02615        284 EYLKYAAKEAPIPWFAIGGID-KSNIPEVLQAG--AKRVAVVRAI--MGA  328 (347)
T ss_pred             HHHHHHHHhCCCCEEEECCCC-HHHHHHHHHcC--CcEEEEeHHH--hCC
Confidence            999999888899999999995 89999999998  9999999999  753

>PLN02826 dihydroorotate dehydrogenase

Probab=98.06  E-value=0.00011  Score=72.36  Aligned_cols=91  Identities=22%  Similarity=0.207  Sum_probs=71.3

Q ss_pred             CHHHHHHHHHHcCCCEEEEeecC--------------CccccCCCC-----HHHHHHHhhcC--CCcEEEEeCCCCHHHH
Q 021156          214 YLDERVLDFLASYADEFLVHGVD--------------VEGKKLGID-----DELVALLGKYS--PIPVTYAGGVTTMADL  272 (316)
Q Consensus       214 ~~~e~a~~~~~~Ga~~ilvtdi~--------------~dG~~~G~d-----~eli~~l~~~~--~iPVIasGGI~s~eDi  272 (316)
                      ++.++++.+.+.|++.|++++..              ..|-++|+.     ++.++++.+.+  ++|||..|||.+.+|+
T Consensus       277 di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~~ipIIgvGGI~sg~Da  356 (409)
T PLN02826        277 DLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRGKIPLVGCGGVSSGEDA  356 (409)
T ss_pred             HHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHH
Confidence            47788999999999999876521              123355653     56788887766  7999999999999999


Q ss_pred             HHHHHhCCCcCEEEEccchhhccCcccHHHHHHHH
Q 021156          273 EKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWH  307 (316)
Q Consensus       273 ~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~  307 (316)
                      .+.+.+|  ++.|-+++++ +|+|+..++++.+.+
T Consensus       357 ~e~i~AG--As~VQv~Ta~-~~~Gp~~i~~I~~eL  388 (409)
T PLN02826        357 YKKIRAG--ASLVQLYTAF-AYEGPALIPRIKAEL  388 (409)
T ss_pred             HHHHHhC--CCeeeecHHH-HhcCHHHHHHHHHHH
Confidence            9999999  8999999997 466887666665543

>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]

Probab=98.05  E-value=0.00014  Score=65.12  Aligned_cols=142  Identities=18%  Similarity=0.128  Sum_probs=96.6

Q ss_pred             CcEEEecCCC-H--HHHHHHHHcCCCEEEe-CCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcce
Q 021156          134 GGLQVGGGIN-S--DNSLSYIEEGATHVIV-TSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQK  209 (316)
Q Consensus       134 ~pl~vGGGIr-~--e~~~~~l~~Gad~VVi-gt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~  209 (316)
                      -++..+.=+- .  -+++.++++|||.+.+ |.+....    ..-.-+..++||   +-+-+|.-  +.           
T Consensus        57 ~~IvAD~Kt~D~G~~e~~ma~~aGAd~~tV~g~A~~~T----I~~~i~~A~~~~---~~v~iDl~--~~-----------  116 (217)
T COG0269          57 KIIVADLKTADAGAIEARMAFEAGADWVTVLGAADDAT----IKKAIKVAKEYG---KEVQIDLI--GV-----------  116 (217)
T ss_pred             CeEEeeeeecchhHHHHHHHHHcCCCEEEEEecCCHHH----HHHHHHHHHHcC---CeEEEEee--cC-----------
Confidence            3444444443 2  3588899999998766 4443333    445555556676   34556764  11           


Q ss_pred             ecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCH--HHHHHHhhcCC--CcEEEEeCCCCHHHHHHHHHhCCCcCEE
Q 021156          210 FSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDD--ELVALLGKYSP--IPVTYAGGVTTMADLEKIKVAGIGRVDV  285 (316)
Q Consensus       210 ~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~--eli~~l~~~~~--iPVIasGGI~s~eDi~~l~~~G~g~~gV  285 (316)
                         .++.+.++++.+.|++.+++|- .+|-...|..|  +.+.++++..+  .++-+.|||. ++++..+...|  ++-+
T Consensus       117 ---~~~~~~~~~l~~~gvd~~~~H~-g~D~q~~G~~~~~~~l~~ik~~~~~g~~vAVaGGI~-~~~i~~~~~~~--~~iv  189 (217)
T COG0269         117 ---WDPEQRAKWLKELGVDQVILHR-GRDAQAAGKSWGEDDLEKIKKLSDLGAKVAVAGGIT-PEDIPLFKGIG--ADIV  189 (217)
T ss_pred             ---CCHHHHHHHHHHhCCCEEEEEe-cccHhhcCCCccHHHHHHHHHhhccCceEEEecCCC-HHHHHHHhcCC--CCEE
Confidence               2577888888889999999875 34444455544  56777766554  6899999985 58999999998  8999


Q ss_pred             EEccchhhccCcccHHHHHH
Q 021156          286 TVGSALDIFGGNLAYKDVVA  305 (316)
Q Consensus       286 ivG~Al~~~~g~~~~~~~~~  305 (316)
                      |+|+++   .+.=++.+..+
T Consensus       190 IvGraI---t~a~dp~~~a~  206 (217)
T COG0269         190 IVGRAI---TGAKDPAEAAR  206 (217)
T ss_pred             EECchh---cCCCCHHHHHH
Confidence            999999   56556555544

>TIGR02708 L_lactate_ox L-lactate oxidase

Probab=98.04  E-value=5.1e-05  Score=73.63  Aligned_cols=74  Identities=16%  Similarity=0.124  Sum_probs=60.4

Q ss_pred             HHHHHHHHHcCCCEEEEeecCCccccCCC-CHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          216 DERVLDFLASYADEFLVHGVDVEGKKLGI-DDELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       216 ~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~-d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      .+.++.+.+.|++.|.+..--.-....++ +++.+.++++.+  ++|||++|||++-.|+.+++.+|  +++|+||+.+
T Consensus       239 ~eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av~~~i~vi~dGGIr~g~Dv~KaLalG--Ad~V~igR~~  315 (367)
T TIGR02708       239 PEDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFDSGVRRGQHVFKALASG--ADLVALGRPV  315 (367)
T ss_pred             HHHHHHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHHhCCCCcEEeeCCcCCHHHHHHHHHcC--CCEEEEcHHH
Confidence            57899999999999876432222223455 689999998765  49999999999999999999998  9999999986

Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.

>CHL00200 trpA tryptophan synthase alpha subunit; Provisional

Probab=98.03  E-value=7.1e-05  Score=69.66  Aligned_cols=134  Identities=15%  Similarity=0.207  Sum_probs=86.1

Q ss_pred             CCCcEEEecCCC------HHH-HHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEe
Q 021156          132 YPGGLQVGGGIN------SDN-SLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVT  204 (316)
Q Consensus       132 ~~~pl~vGGGIr------~e~-~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~  204 (316)
                      .++|+.+=+=.+      .|+ ++.+.++|+|.+++--...+.    .+.+.+..+++|-+ .+.-+.-           
T Consensus        90 ~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee----~~~~~~~~~~~gi~-~I~lv~P-----------  153 (263)
T CHL00200         90 IKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEE----SDYLISVCNLYNIE-LILLIAP-----------  153 (263)
T ss_pred             CCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHH----HHHHHHHHHHcCCC-EEEEECC-----------
Confidence            467854433333      133 777788999999987766554    55555666667622 2222211           


Q ss_pred             CCcceecccCHHHHHHHHHHcCCCEEEEeec-CCccccCCC--C-HHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCC
Q 021156          205 DRWQKFSDVYLDERVLDFLASYADEFLVHGV-DVEGKKLGI--D-DELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGI  280 (316)
Q Consensus       205 ~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi-~~dG~~~G~--d-~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~  280 (316)
                              -.+.+.++.+.+..-+.+.+.+. -..|...-.  + .++++++++.++.|+.+++||++.++++++.+.| 
T Consensus       154 --------tT~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~~G-  224 (263)
T CHL00200        154 --------TSSKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIILGFGISTSEQIKQIKGWN-  224 (263)
T ss_pred             --------CCCHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHhcC-
Confidence                    12345666666654444443332 112221111  2 2467778888899999999999999999999998 


Q ss_pred             CcCEEEEccch
Q 021156          281 GRVDVTVGSAL  291 (316)
Q Consensus       281 g~~gVivG~Al  291 (316)
                       +||||||+|+
T Consensus       225 -ADGvVVGSal  234 (263)
T CHL00200        225 -INGIVIGSAC  234 (263)
T ss_pred             -CCEEEECHHH
Confidence             9999999999

>PRK13111 trpA tryptophan synthase subunit alpha; Provisional

Probab=98.03  E-value=9.8e-05  Score=68.52  Aligned_cols=133  Identities=22%  Similarity=0.200  Sum_probs=82.6

Q ss_pred             CCCcEEEecCCC------HHH-HHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEe
Q 021156          132 YPGGLQVGGGIN------SDN-SLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVT  204 (316)
Q Consensus       132 ~~~pl~vGGGIr------~e~-~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~  204 (316)
                      .++|+.+=+=.+      .++ ++.+.++|++-+++--..++.    .+.+.+..+++|-+-| +-+..           
T Consensus        88 ~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee----~~~~~~~~~~~gl~~I-~lvap-----------  151 (258)
T PRK13111         88 PTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEE----AEELRAAAKKHGLDLI-FLVAP-----------  151 (258)
T ss_pred             CCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHH----HHHHHHHHHHcCCcEE-EEeCC-----------
Confidence            457865544222      233 778888999999985433322    2233333355552222 11111           


Q ss_pred             CCcceecccCHHHHHHHHHHcCCCEEEEeec-CCccccCCC--C-HHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCC
Q 021156          205 DRWQKFSDVYLDERVLDFLASYADEFLVHGV-DVEGKKLGI--D-DELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGI  280 (316)
Q Consensus       205 ~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi-~~dG~~~G~--d-~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~  280 (316)
                              ....+.++.+.+..-+.+-+..+ ...|...+.  + .+.++++++.+++|+++++||++.+|+.++.+.  
T Consensus       152 --------~t~~eri~~i~~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~~--  221 (258)
T PRK13111        152 --------TTTDERLKKIASHASGFVYYVSRAGVTGARSADAADLAELVARLKAHTDLPVAVGFGISTPEQAAAIAAV--  221 (258)
T ss_pred             --------CCCHHHHHHHHHhCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcCCCcEEEEcccCCHHHHHHHHHh--
Confidence                    12345666676666555433232 223433332  3 348899999889999999999999999999974  


Q ss_pred             CcCEEEEccch
Q 021156          281 GRVDVTVGSAL  291 (316)
Q Consensus       281 g~~gVivG~Al  291 (316)
                       ++||+||+++
T Consensus       222 -ADGviVGSai  231 (258)
T PRK13111        222 -ADGVIVGSAL  231 (258)
T ss_pred             -CCEEEEcHHH
Confidence             7999999999

>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4

Probab=98.03  E-value=3.3e-05  Score=74.77  Aligned_cols=148  Identities=16%  Similarity=0.121  Sum_probs=93.8

Q ss_pred             HHHHHHHcCCCEEEeCCe----------e-e---cC---C------CCCHHHHHHHHHHhcC---ceEEEeeeeeecCCe
Q 021156          146 NSLSYIEEGATHVIVTSY----------V-F---NN---G------QMDLERLKDLVRVVGK---QRLVLDLSCRKKDGK  199 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~----------~-~---~~---~------~~~~eli~ei~~~~G~---~~IvvslD~k~~~g~  199 (316)
                      .++++.++|+|-|=|..+          . .   +|   |      ++..|.++.+.+.+|.   ..+.+.+-+.   ..
T Consensus       149 aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s---~~  225 (353)
T cd04735         149 ATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFS---PE  225 (353)
T ss_pred             HHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEEC---cc
Confidence            356667899999988642          1 1   11   1      2334677777777761   1222333211   10


Q ss_pred             eEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccc--cCCC-CHHHHHHHhhcC--CCcEEEEeCCCCHHHHHH
Q 021156          200 YAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGK--KLGI-DDELVALLGKYS--PIPVTYAGGVTTMADLEK  274 (316)
Q Consensus       200 ~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~--~~G~-d~eli~~l~~~~--~iPVIasGGI~s~eDi~~  274 (316)
                       . ...+..  +.-+..++++.+++.|++.+-++.-.....  ..++ +++..+.+++.+  ++||+++||+.+++++.+
T Consensus       226 -~-~~~~g~--~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~  301 (353)
T cd04735         226 -E-PEEPGI--RMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGSINTPDDALE  301 (353)
T ss_pred             -c-ccCCCC--CHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECCCCCHHHHHH
Confidence             0 001111  112456789999999999887765322221  1222 456666676655  799999999999999999


Q ss_pred             HHHhCCCcCEEEEccchhhccCcccHHHHH
Q 021156          275 IKVAGIGRVDVTVGSALDIFGGNLAYKDVV  304 (316)
Q Consensus       275 l~~~G~g~~gVivG~Al~~~~g~~~~~~~~  304 (316)
                      +++.|  ++.|.+||++  ..+|..++.+.
T Consensus       302 ~l~~g--aD~V~~gR~l--iadPdl~~k~~  327 (353)
T cd04735         302 ALETG--ADLVAIGRGL--LVDPDWVEKIK  327 (353)
T ss_pred             HHHcC--CChHHHhHHH--HhCccHHHHHH
Confidence            99987  9999999999  88887666553

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>PRK08091 ribulose-phosphate 3-epimerase; Validated

Probab=98.02  E-value=0.0018  Score=58.98  Aligned_cols=179  Identities=16%  Similarity=0.042  Sum_probs=115.2

Q ss_pred             HHHHHHHHcCCCcceEEEecCCc-cc---HHHHHHHHHhCCCcEEEecCC-CH-HHHHHHHHcCCCEEEeCCeeecCCCC
Q 021156           97 EFANLYKEDGLTGGHAIMLGADP-LS---KAAAIEALHAYPGGLQVGGGI-NS-DNSLSYIEEGATHVIVTSYVFNNGQM  170 (316)
Q Consensus        97 e~a~~~~~~G~~~l~lvDLda~~-~~---~~~i~~~v~~~~~pl~vGGGI-r~-e~~~~~l~~Gad~VVigt~~~~~~~~  170 (316)
                      +..+.+.++|++++|+==.|+.. +|   -+.+++.++. ..|+.|===+ +. +-++.+.++|||.+.+-.+...+   
T Consensus        29 ~el~~l~~~g~d~lHiDVMDG~FVPNitfGp~~i~~i~~-~~~~DvHLMv~~P~~~i~~~~~aGad~It~H~Ea~~~---  104 (228)
T PRK08091         29 ETLTTLSENQLRLLHFDIADGQFSPFFTVGAIAIKQFPT-HCFKDVHLMVRDQFEVAKACVAAGADIVTLQVEQTHD---  104 (228)
T ss_pred             HHHHHHHHCCCCEEEEeccCCCcCCccccCHHHHHHhCC-CCCEEEEeccCCHHHHHHHHHHhCCCEEEEcccCccc---
Confidence            56666777899999987788763 22   2334455553 4453332223 35 44889999999999998887554   


Q ss_pred             CHHHHHHHHHHhcC-ceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHH
Q 021156          171 DLERLKDLVRVVGK-QRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELV  249 (316)
Q Consensus       171 ~~eli~ei~~~~G~-~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli  249 (316)
                       +..+-+..++.|. -+.-+++...                   .+.+.++.+.+. ++.+++..++-....+.+..+.+
T Consensus       105 -~~~~l~~Ik~~g~~~kaGlalnP~-------------------Tp~~~i~~~l~~-vD~VLiMtV~PGfgGQ~f~~~~l  163 (228)
T PRK08091        105 -LALTIEWLAKQKTTVLIGLCLCPE-------------------TPISLLEPYLDQ-IDLIQILTLDPRTGTKAPSDLIL  163 (228)
T ss_pred             -HHHHHHHHHHCCCCceEEEEECCC-------------------CCHHHHHHHHhh-cCEEEEEEECCCCCCccccHHHH
Confidence             5444444455552 0333333321                   234556666654 99999999887655666655444


Q ss_pred             HHH---hhc-----CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHH
Q 021156          250 ALL---GKY-----SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAW  306 (316)
Q Consensus       250 ~~l---~~~-----~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~  306 (316)
                      +++   ++.     .+..+.+=|||+ .+.+.++.++|  ++.+++|+++  |..+ ++++..+.
T Consensus       164 ~KI~~lr~~~~~~~~~~~IeVDGGI~-~~ti~~l~~aG--aD~~V~GSal--F~~~-d~~~~i~~  222 (228)
T PRK08091        164 DRVIQVENRLGNRRVEKLISIDGSMT-LELASYLKQHQ--IDWVVSGSAL--FSQG-ELKTTLKE  222 (228)
T ss_pred             HHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHHCC--CCEEEEChhh--hCCC-CHHHHHHH
Confidence            444   322     245689999988 57899999998  8999999999  7532 45555443

>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional

Probab=98.01  E-value=0.0011  Score=60.14  Aligned_cols=165  Identities=11%  Similarity=0.106  Sum_probs=109.3

Q ss_pred             CHHHHHHHHHHcC-CCcceEEEecCCcc----cHHHHHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCC
Q 021156           94 SAAEFANLYKEDG-LTGGHAIMLGADPL----SKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNG  168 (316)
Q Consensus        94 ~p~e~a~~~~~~G-~~~l~lvDLda~~~----~~~~i~~~v~~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~  168 (316)
                      +..+.++...+.| +..+++=+=+....    --..+.+.++..++++++-.     +++-+++.|||-|=+|.....  
T Consensus        27 ~~~~~l~~al~~G~v~~vQlR~K~l~~~~~~~~a~~l~~l~~~~gv~liINd-----~~dlA~~~~adGVHLg~~d~~--   99 (221)
T PRK06512         27 ELAKLLRAALQGGDVASVILPQYGLDEATFQKQAEKLVPVIQEAGAAALIAG-----DSRIAGRVKADGLHIEGNLAA--   99 (221)
T ss_pred             cHHHHHHHHHcCCCccEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCEEEEeC-----HHHHHHHhCCCEEEECccccC--
Confidence            3455666666677 57666654333211    12234445556678888875     577778889998888865322  


Q ss_pred             CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCc--cccCCCCH
Q 021156          169 QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVE--GKKLGIDD  246 (316)
Q Consensus       169 ~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~d--G~~~G~d~  246 (316)
                            +.+..+..|++.+ +++.+.  +                + .+.+.+..+.|++.+.+-.+-..  .......+
T Consensus       100 ------~~~~r~~~~~~~i-iG~s~~--~----------------s-~~~a~~A~~~gaDYv~~Gpv~t~tK~~~~p~gl  153 (221)
T PRK06512        100 ------LAEAIEKHAPKMI-VGFGNL--R----------------D-RHGAMEIGELRPDYLFFGKLGADNKPEAHPRNL  153 (221)
T ss_pred             ------HHHHHHhcCCCCE-EEecCC--C----------------C-HHHHHHhhhcCCCEEEECCCCCCCCCCCCCCCh
Confidence                  4566666665543 566532  1                1 23455667899999876444211  11122267


Q ss_pred             HHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccC
Q 021156          247 ELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGG  296 (316)
Q Consensus       247 eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g  296 (316)
                      +.++++++.+++||++-||| +.+++.++.+.|  ++||.+-+++  +..
T Consensus       154 ~~l~~~~~~~~iPvvAIGGI-~~~n~~~~~~~G--A~giAvisai--~~~  198 (221)
T PRK06512        154 SLAEWWAEMIEIPCIVQAGS-DLASAVEVAETG--AEFVALERAV--FDA  198 (221)
T ss_pred             HHHHHHHHhCCCCEEEEeCC-CHHHHHHHHHhC--CCEEEEhHHh--hCC
Confidence            88888888889999999999 889999999998  9999999999  643

>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional

Probab=98.01  E-value=0.00016  Score=70.84  Aligned_cols=141  Identities=16%  Similarity=0.089  Sum_probs=93.8

Q ss_pred             CcEEEecCCC-H-HH-HHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCccee
Q 021156          134 GGLQVGGGIN-S-DN-SLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKF  210 (316)
Q Consensus       134 ~pl~vGGGIr-~-e~-~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~  210 (316)
                      .++.+.==+. . .. ++.+.++||+.+.+-.+.-..   .++...+..+++|   +.+.+|.-  +             
T Consensus       227 ~~I~~DLK~~Di~~~vv~~~a~aGAD~vTVH~ea~~~---ti~~ai~~akk~G---ikvgVD~l--n-------------  285 (391)
T PRK13307        227 AFIVADLKTLDTGNLEARMAADATADAVVISGLAPIS---TIEKAIHEAQKTG---IYSILDML--N-------------  285 (391)
T ss_pred             CeEEEEecccChhhHHHHHHHhcCCCEEEEeccCCHH---HHHHHHHHHHHcC---CEEEEEEc--C-------------
Confidence            4555555443 2 23 667789999999887654221   1333444445565   34555543  1             


Q ss_pred             cccCHHHHHHHHHHcCCCEEEEee-cCCccccCCCCHHHHHHHhhc-CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEc
Q 021156          211 SDVYLDERVLDFLASYADEFLVHG-VDVEGKKLGIDDELVALLGKY-SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVG  288 (316)
Q Consensus       211 ~~~~~~e~a~~~~~~Ga~~ilvtd-i~~dG~~~G~d~eli~~l~~~-~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG  288 (316)
                       .-++.+.++.+ ..+++.+++|. ++..  .+.+-|+.++++++. .++++.+.|||+ .+++..+.+.|  ++.+++|
T Consensus       286 -p~tp~e~i~~l-~~~vD~Vllht~vdp~--~~~~~~~kI~~ikk~~~~~~I~VdGGI~-~eti~~l~~aG--ADivVVG  358 (391)
T PRK13307        286 -VEDPVKLLESL-KVKPDVVELHRGIDEE--GTEHAWGNIKEIKKAGGKILVAVAGGVR-VENVEEALKAG--ADILVVG  358 (391)
T ss_pred             -CCCHHHHHHHh-hCCCCEEEEccccCCC--cccchHHHHHHHHHhCCCCcEEEECCcC-HHHHHHHHHcC--CCEEEEe
Confidence             01356777776 67899999885 6665  335667778877763 578999999999 78899999998  8999999


Q ss_pred             cchhhccCcccHHHHHH
Q 021156          289 SALDIFGGNLAYKDVVA  305 (316)
Q Consensus       289 ~Al~~~~g~~~~~~~~~  305 (316)
                      |++  |... ++++..+
T Consensus       359 saI--f~a~-Dp~~aak  372 (391)
T PRK13307        359 RAI--TKSK-DVRRAAE  372 (391)
T ss_pred             HHH--hCCC-CHHHHHH
Confidence            999  7433 4444443

>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein

Probab=98.01  E-value=0.00017  Score=70.22  Aligned_cols=120  Identities=19%  Similarity=0.242  Sum_probs=78.9

Q ss_pred             HHHHHHHHcCCCEEEeCCeeec----CCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHH
Q 021156          145 DNSLSYIEEGATHVIVTSYVFN----NGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVL  220 (316)
Q Consensus       145 e~~~~~l~~Gad~VVigt~~~~----~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~  220 (316)
                      +-++.+.++|++.+++-..+..    .+.-+|..+.++.+.++ -.|+. =++                    ...+.++
T Consensus       146 e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~-IPVI~-G~V--------------------~t~e~A~  203 (369)
T TIGR01304       146 EIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELD-VPVIA-GGV--------------------NDYTTAL  203 (369)
T ss_pred             HHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCC-CCEEE-eCC--------------------CCHHHHH
Confidence            5588899999999998533211    12224777888887763 22221 121                    1236677


Q ss_pred             HHHHcCCCEEEEeecCCccc-----cCC--C-CHHHHHHHhh-------cC---CCcEEEEeCCCCHHHHHHHHHhCCCc
Q 021156          221 DFLASYADEFLVHGVDVEGK-----KLG--I-DDELVALLGK-------YS---PIPVTYAGGVTTMADLEKIKVAGIGR  282 (316)
Q Consensus       221 ~~~~~Ga~~ilvtdi~~dG~-----~~G--~-d~eli~~l~~-------~~---~iPVIasGGI~s~eDi~~l~~~G~g~  282 (316)
                      ++.+.|++.|+   +.+-|.     ..|  . ....+.++++       .+   .+|||+.|||++..|+.+++.+|  +
T Consensus       204 ~~~~aGaDgV~---~G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlAlG--A  278 (369)
T TIGR01304       204 HLMRTGAAGVI---VGPGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIACG--A  278 (369)
T ss_pred             HHHHcCCCEEE---ECCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHcC--C
Confidence            78889999886   222221     112  2 2334444432       12   38999999999999999999998  9


Q ss_pred             CEEEEccch
Q 021156          283 VDVTVGSAL  291 (316)
Q Consensus       283 ~gVivG~Al  291 (316)
                      ++|++|+++
T Consensus       279 daV~iGt~~  287 (369)
T TIGR01304       279 DAVVLGSPL  287 (369)
T ss_pred             CEeeeHHHH
Confidence            999999988

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.

>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]

Probab=98.00  E-value=0.00058  Score=61.48  Aligned_cols=174  Identities=17%  Similarity=0.109  Sum_probs=123.5

Q ss_pred             HHHHHHHHHcCCCcceEEEecCCccc----HHHHHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCC
Q 021156           96 AEFANLYKEDGLTGGHAIMLGADPLS----KAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMD  171 (316)
Q Consensus        96 ~e~a~~~~~~G~~~l~lvDLda~~~~----~~~i~~~v~~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~  171 (316)
                      .+.++...+.|.+-+.+-+=+.....    -..+.+++++.++|+.+.+     +++-+++.|||.|=+|.....     
T Consensus        24 ~~~ve~al~~Gv~~vQlR~K~~~~~~~~~~a~~~~~lc~~~~v~liINd-----~~dlA~~~~AdGVHlGq~D~~-----   93 (211)
T COG0352          24 LEWVEAALKGGVTAVQLREKDLSDEEYLALAEKLRALCQKYGVPLIIND-----RVDLALAVGADGVHLGQDDMP-----   93 (211)
T ss_pred             HHHHHHHHhCCCeEEEEecCCCChHHHHHHHHHHHHHHHHhCCeEEecC-----cHHHHHhCCCCEEEcCCcccc-----
Confidence            56777777788888888776654322    2345556677889999987     566677899999999987444     


Q ss_pred             HHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeec----CCccccCCCCHH
Q 021156          172 LERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGV----DVEGKKLGIDDE  247 (316)
Q Consensus       172 ~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi----~~dG~~~G~d~e  247 (316)
                         +.+..+.+++ ..++.+.+.                    -.+.+.+..+.|++.+.+-.+    +..+. ....++
T Consensus        94 ---~~~ar~~~~~-~~iIG~S~h--------------------~~eea~~A~~~g~DYv~~GpifpT~tK~~~-~~~G~~  148 (211)
T COG0352          94 ---LAEARELLGP-GLIIGLSTH--------------------DLEEALEAEELGADYVGLGPIFPTSTKPDA-PPLGLE  148 (211)
T ss_pred             ---hHHHHHhcCC-CCEEEeecC--------------------CHHHHHHHHhcCCCEEEECCcCCCCCCCCC-CccCHH
Confidence               3455555653 444666553                    146788888999998865333    44444 444789


Q ss_pred             HHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHHh
Q 021156          248 LVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       248 li~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~~  309 (316)
                      .++++.+...+|+++-|||. .+.+.++++.|  ++||.+-||+  +...=....+.++.++
T Consensus       149 ~l~~~~~~~~iP~vAIGGi~-~~nv~~v~~~G--a~gVAvvsai--~~a~d~~~a~~~~~~~  205 (211)
T COG0352         149 GLREIRELVNIPVVAIGGIN-LENVPEVLEAG--ADGVAVVSAI--TSAADPAAAAKALRNA  205 (211)
T ss_pred             HHHHHHHhCCCCEEEEcCCC-HHHHHHHHHhC--CCeEEehhHh--hcCCCHHHHHHHHHHH
Confidence            99999888889999999986 58899999998  9999999999  6544333334444443

>PLN02591 tryptophan synthase

Probab=97.99  E-value=0.00011  Score=67.97  Aligned_cols=134  Identities=21%  Similarity=0.197  Sum_probs=82.8

Q ss_pred             CCCcEEEecCCC------HHH-HHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEe
Q 021156          132 YPGGLQVGGGIN------SDN-SLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVT  204 (316)
Q Consensus       132 ~~~pl~vGGGIr------~e~-~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~  204 (316)
                      ..+|+.+=+=.+      .++ ++++.++|++-+++--..++.    .+.+.+..+++|=+ .+..+.-           
T Consensus        77 ~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee----~~~~~~~~~~~gl~-~I~lv~P-----------  140 (250)
T PLN02591         77 LSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEE----TEALRAEAAKNGIE-LVLLTTP-----------  140 (250)
T ss_pred             CCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHH----HHHHHHHHHHcCCe-EEEEeCC-----------
Confidence            567865444333      133 777788999999886544332    33344444555421 2222211           


Q ss_pred             CCcceecccCHHHHHHHHHHcCCCEEEEee-cCCccccCCC--CHH-HHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCC
Q 021156          205 DRWQKFSDVYLDERVLDFLASYADEFLVHG-VDVEGKKLGI--DDE-LVALLGKYSPIPVTYAGGVTTMADLEKIKVAGI  280 (316)
Q Consensus       205 ~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtd-i~~dG~~~G~--d~e-li~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~  280 (316)
                              -...+.++...+..-+.+-+-+ .-..|...+.  +.+ .++++++.+++||.++-||++.+|+.++.+.| 
T Consensus       141 --------tt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~G-  211 (250)
T PLN02591        141 --------TTPTERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVTDKPVAVGFGISKPEHAKQIAGWG-  211 (250)
T ss_pred             --------CCCHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcCCCceEEeCCCCCHHHHHHHHhcC-
Confidence                    0123455555555444332222 2223443342  433 58888888899999999999999999999998 


Q ss_pred             CcCEEEEccch
Q 021156          281 GRVDVTVGSAL  291 (316)
Q Consensus       281 g~~gVivG~Al  291 (316)
                       ++||+||||+
T Consensus       212 -ADGvIVGSal  221 (250)
T PLN02591        212 -ADGVIVGSAM  221 (250)
T ss_pred             -CCEEEECHHH
Confidence             9999999999

>PRK08649 inosine 5-monophosphate dehydrogenase; Validated

Probab=97.99  E-value=8.8e-05  Score=72.17  Aligned_cols=99  Identities=16%  Similarity=0.176  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCC--CHHHH
Q 021156          172 LERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGI--DDELV  249 (316)
Q Consensus       172 ~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~--d~eli  249 (316)
                      |+++.++.+...+..  +.+-++         .      +..+..+.++.+.+.|++.+.+|..+++..+.+.  |++.+
T Consensus       117 p~l~~~iv~~~~~~~--V~v~vr---------~------~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i  179 (368)
T PRK08649        117 PELITERIAEIRDAG--VIVAVS---------L------SPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNL  179 (368)
T ss_pred             HHHHHHHHHHHHhCe--EEEEEe---------c------CCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHH
Confidence            888888887773222  222222         1      1235779999999999999999999888776543  78888


Q ss_pred             HHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccc
Q 021156          250 ALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSA  290 (316)
Q Consensus       250 ~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~A  290 (316)
                      .++.+..++|||+ |++.|.++.+++.+.|  +++|++|+.
T Consensus       180 ~~~ik~~~ipVIa-G~V~t~e~A~~l~~aG--AD~V~VG~G  217 (368)
T PRK08649        180 KEFIYELDVPVIV-GGCVTYTTALHLMRTG--AAGVLVGIG  217 (368)
T ss_pred             HHHHHHCCCCEEE-eCCCCHHHHHHHHHcC--CCEEEECCC
Confidence            8887777999999 8899999999999988  999999965

>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional

Probab=97.96  E-value=0.00048  Score=68.80  Aligned_cols=169  Identities=15%  Similarity=0.074  Sum_probs=113.8

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCC---cccHHHHHHHHHhCCCcEEEecCC-CHHHHHHHHHcCCCEEEeCCeeecCC
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGAD---PLSKAAAIEALHAYPGGLQVGGGI-NSDNSLSYIEEGATHVIVTSYVFNNG  168 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~---~~~~~~i~~~v~~~~~pl~vGGGI-r~e~~~~~l~~Gad~VVigt~~~~~~  168 (316)
                      -||.++|+.| +.|+..+-+  |.-.   ..+...+..+.+.+.+|+.-===| ..-++.+...+|||.|.+=...+.  
T Consensus        70 ~d~~~~a~~y-~~gA~aiSV--lTe~~~F~Gs~~~l~~vr~~v~~PvLrKDFiid~~QI~ea~~~GADavLLI~~~L~--  144 (454)
T PRK09427         70 FDPAEIARVY-KHYASAISV--LTDEKYFQGSFDFLPIVRAIVTQPILCKDFIIDPYQIYLARYYGADAILLMLSVLD--  144 (454)
T ss_pred             CCHHHHHHHH-HcCCeEEEE--ecCcCcCCCCHHHHHHHHHhCCCCEEeccccCCHHHHHHHHHcCCCchhHHHHhCC--
Confidence            4899999999 777654333  2211   134444444444677887643334 357899999999999888776666  


Q ss_pred             CCCHHHHHHHH---HHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCC
Q 021156          169 QMDLERLKDLV---RVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGID  245 (316)
Q Consensus       169 ~~~~eli~ei~---~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d  245 (316)
                         ++.++++.   +.+|       +++-       |-++         ..+.++...+.|++-+-++.++....  -.|
T Consensus       145 ---~~~l~~l~~~a~~lG-------l~~l-------vEvh---------~~~El~~al~~~a~iiGiNnRdL~t~--~vd  196 (454)
T PRK09427        145 ---DEQYRQLAAVAHSLN-------MGVL-------TEVS---------NEEELERAIALGAKVIGINNRNLRDL--SID  196 (454)
T ss_pred             ---HHHHHHHHHHHHHcC-------CcEE-------EEEC---------CHHHHHHHHhCCCCEEEEeCCCCccc--eEC
Confidence               44445444   4444       3331       2111         13456677888999888898887522  247


Q ss_pred             HHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCccc
Q 021156          246 DELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLA  299 (316)
Q Consensus       246 ~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~  299 (316)
                      .+...++....  ++.+++.+||.+.+|+.++.. +  ++++.||.++  +..+=+
T Consensus       197 ~~~~~~l~~~ip~~~~~vseSGI~t~~d~~~~~~-~--~davLiG~~l--m~~~d~  247 (454)
T PRK09427        197 LNRTRELAPLIPADVIVISESGIYTHAQVRELSP-F--ANGFLIGSSL--MAEDDL  247 (454)
T ss_pred             HHHHHHHHhhCCCCcEEEEeCCCCCHHHHHHHHh-c--CCEEEECHHH--cCCCCH
Confidence            77777776543  567899999999999999864 6  8999999999  876533

>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain

Probab=97.95  E-value=0.00012  Score=71.46  Aligned_cols=148  Identities=17%  Similarity=0.078  Sum_probs=92.4

Q ss_pred             HHHHHHHcCCCEEEeCCee----------ecC-------C------CCCHHHHHHHHHHhcCc-eEEEeeeeeecCCeeE
Q 021156          146 NSLSYIEEGATHVIVTSYV----------FNN-------G------QMDLERLKDLVRVVGKQ-RLVLDLSCRKKDGKYA  201 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~~----------~~~-------~------~~~~eli~ei~~~~G~~-~IvvslD~k~~~g~~~  201 (316)
                      .++++.++|+|-|=|..+-          ..|       |      ++..|.++++.+.+|++ .|.+-+...  +   .
T Consensus       155 AA~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~--~---~  229 (370)
T cd02929         155 AALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVD--E---L  229 (370)
T ss_pred             HHHHHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHH--H---h
Confidence            3556667999999775432          111       1      23457778887778743 122222211  0   0


Q ss_pred             EEe-CCcceecccCHHHHHHHHHHcCCCEEEEee-------cCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHH
Q 021156          202 IVT-DRWQKFSDVYLDERVLDFLASYADEFLVHG-------VDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLE  273 (316)
Q Consensus       202 v~~-~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtd-------i~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~  273 (316)
                      ... .++.   .-+..++++.+++. ++.+-++.       ........|+.+++.+.+++.+++||+++||+.+++++.
T Consensus       230 ~~~~g~~~---~~e~~~~~~~l~~~-~D~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~~~  305 (370)
T cd02929         230 IGPGGIES---EGEGVEFVEMLDEL-PDLWDVNVGDWANDGEDSRFYPEGHQEPYIKFVKQVTSKPVVGVGRFTSPDKMV  305 (370)
T ss_pred             cCCCCCCC---HHHHHHHHHHHHhh-CCEEEecCCCccccccccccCCccccHHHHHHHHHHCCCCEEEeCCCCCHHHHH
Confidence            000 0111   11345677777654 55432211       000011245678888899988999999999999999999


Q ss_pred             HHHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156          274 KIKVAGIGRVDVTVGSALDIFGGNLAYKDVVA  305 (316)
Q Consensus       274 ~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~  305 (316)
                      ++++.| .+|.|.+||++  ..+|..++++++
T Consensus       306 ~~l~~g-~~D~V~~gR~~--ladP~l~~k~~~  334 (370)
T cd02929         306 EVVKSG-ILDLIGAARPS--IADPFLPKKIRE  334 (370)
T ss_pred             HHHHcC-CCCeeeechHh--hhCchHHHHHHc
Confidence            999998 59999999999  999987776643

TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.

>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5

Probab=97.95  E-value=0.00019  Score=69.79  Aligned_cols=151  Identities=19%  Similarity=0.115  Sum_probs=95.8

Q ss_pred             HHHHHHcCCCEEEeCCee--------------ecC--C-------CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEE
Q 021156          147 SLSYIEEGATHVIVTSYV--------------FNN--G-------QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIV  203 (316)
Q Consensus       147 ~~~~l~~Gad~VVigt~~--------------~~~--~-------~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~  203 (316)
                      ++++.++|+|-|=|..+-              ++|  |       ++..|.++.+.+.+|++. .+.+  |....+..-.
T Consensus       150 A~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~-~v~v--Ris~~~~~~~  226 (361)
T cd04747         150 AADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDF-PIIL--RFSQWKQQDY  226 (361)
T ss_pred             HHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCC-eEEE--EECccccccc
Confidence            556667899999776443              122  1       234577777777777543 2332  2110000000


Q ss_pred             eCCcceecccCHHHHHHHHHHcCCCEEEEeecC-CccccCCCCHHHHHHHhhcCCCcEEEEeCC----------------
Q 021156          204 TDRWQKFSDVYLDERVLDFLASYADEFLVHGVD-VEGKKLGIDDELVALLGKYSPIPVTYAGGV----------------  266 (316)
Q Consensus       204 ~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~-~dG~~~G~d~eli~~l~~~~~iPVIasGGI----------------  266 (316)
                      ..++. .+..+..++++.+.+.|++.+=+..-. ......|.++++.+++++.+++||++.|++                
T Consensus       227 ~~~~g-~~~~e~~~~~~~l~~~gvd~i~vs~g~~~~~~~~~~~~~~~~~~k~~~~~pv~~~G~i~~~~~~~~~~~~~~~~  305 (361)
T cd04747         227 TARLA-DTPDELEALLAPLVDAGVDIFHCSTRRFWEPEFEGSELNLAGWTKKLTGLPTITVGSVGLDGDFIGAFAGDEGA  305 (361)
T ss_pred             ccCCC-CCHHHHHHHHHHHHHcCCCEEEecCCCccCCCcCccchhHHHHHHHHcCCCEEEECCccccccccccccccccc
Confidence            00100 011134566777899999865332210 022345667888888888889999999999                


Q ss_pred             --CCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHH
Q 021156          267 --TTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVV  304 (316)
Q Consensus       267 --~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~  304 (316)
                        .+++++.++++.| +++.|.+||++  ..+|..++++.
T Consensus       306 ~~~~~~~a~~~l~~g-~~D~V~~gR~~--iadP~~~~k~~  342 (361)
T cd04747         306 SPASLDRLLERLERG-EFDLVAVGRAL--LSDPAWVAKVR  342 (361)
T ss_pred             ccCCHHHHHHHHHCC-CCCeehhhHHH--HhCcHHHHHHH
Confidence              6999999999988 59999999999  99997766653

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=97.95  E-value=0.0018  Score=58.53  Aligned_cols=171  Identities=16%  Similarity=0.182  Sum_probs=110.3

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHH-hCCC--cEEEecCC-C-HHHHHHHHHcCCCEEEeCCeeecC
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALH-AYPG--GLQVGGGI-N-SDNSLSYIEEGATHVIVTSYVFNN  167 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~-~~~~--pl~vGGGI-r-~e~~~~~l~~Gad~VVigt~~~~~  167 (316)
                      .+...+++.+.+.|+.-+-+..   ..+.....++.++ +.+-  .+.+|.|- . .++++.+.++||+.+|-  -    
T Consensus        25 ~~a~~~~~al~~~Gi~~iEit~---~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fivs--P----   95 (213)
T PRK06552         25 EEALKISLAVIKGGIKAIEVTY---TNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIVS--P----   95 (213)
T ss_pred             HHHHHHHHHHHHCCCCEEEEEC---CCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEEC--C----
Confidence            3566788888887766444443   2233444445554 4432  28888776 4 59999999999999872  1    


Q ss_pred             CCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHH
Q 021156          168 GQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDE  247 (316)
Q Consensus       168 ~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~e  247 (316)
                       -++++.++.. ++.|    ++.+-     |        -     .++ +.+....+.|++.+-+...+    ..|  .+
T Consensus        96 -~~~~~v~~~~-~~~~----i~~iP-----G--------~-----~T~-~E~~~A~~~Gad~vklFPa~----~~G--~~  144 (213)
T PRK06552         96 -SFNRETAKIC-NLYQ----IPYLP-----G--------C-----MTV-TEIVTALEAGSEIVKLFPGS----TLG--PS  144 (213)
T ss_pred             -CCCHHHHHHH-HHcC----CCEEC-----C--------c-----CCH-HHHHHHHHcCCCEEEECCcc----cCC--HH
Confidence             1237766554 3443    22221     1        0     123 44566678999988764422    123  56


Q ss_pred             HHHHHhhcCC-CcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCc--ccHHHHHHHHH
Q 021156          248 LVALLGKYSP-IPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGN--LAYKDVVAWHA  308 (316)
Q Consensus       248 li~~l~~~~~-iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~--~~~~~~~~~~~  308 (316)
                      .++.++...+ +|+++.|||. .+.+.++++.|  ++++.+|+++  +...  -+++++.+.++
T Consensus       145 ~ik~l~~~~p~ip~~atGGI~-~~N~~~~l~aG--a~~vavgs~l--~~~~~~~~~~~i~~~a~  203 (213)
T PRK06552        145 FIKAIKGPLPQVNVMVTGGVN-LDNVKDWFAAG--ADAVGIGGEL--NKLASQGDFDLITEKAK  203 (213)
T ss_pred             HHHHHhhhCCCCEEEEECCCC-HHHHHHHHHCC--CcEEEEchHH--hCccccCCHHHHHHHHH
Confidence            7888887654 9999999998 68999999998  8999999999  6431  13345544443

>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=97.92  E-value=0.0011  Score=59.88  Aligned_cols=172  Identities=16%  Similarity=0.155  Sum_probs=113.1

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHH-hCCCcEEEecCCC--HHHHHHHHHcCCCEEEeCCeeecCCC
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALH-AYPGGLQVGGGIN--SDNSLSYIEEGATHVIVTSYVFNNGQ  169 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~-~~~~pl~vGGGIr--~e~~~~~l~~Gad~VVigt~~~~~~~  169 (316)
                      ++.+++++.+.+.|++-+-+. |+.  +.....++.++ +.+ .+.+|.|--  .++++.++++||+.++.=..      
T Consensus        27 ~~a~~i~~al~~~Gi~~iEit-l~~--~~~~~~I~~l~~~~p-~~~IGAGTVl~~~~a~~a~~aGA~FivsP~~------   96 (212)
T PRK05718         27 EDAVPLAKALVAGGLPVLEVT-LRT--PAALEAIRLIAKEVP-EALIGAGTVLNPEQLAQAIEAGAQFIVSPGL------   96 (212)
T ss_pred             HHHHHHHHHHHHcCCCEEEEe-cCC--ccHHHHHHHHHHHCC-CCEEEEeeccCHHHHHHHHHcCCCEEECCCC------
Confidence            356678888888888766666 332  23344445554 454 477887774  48999999999999876442      


Q ss_pred             CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHH
Q 021156          170 MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELV  249 (316)
Q Consensus       170 ~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli  249 (316)
                       +++.++... +++       +++-  -|             -.++.| +..+.+.|++.+-+.+-+.-|     ....+
T Consensus        97 -~~~vi~~a~-~~~-------i~~i--PG-------------~~TptE-i~~a~~~Ga~~vKlFPa~~~g-----g~~~l  146 (212)
T PRK05718         97 -TPPLLKAAQ-EGP-------IPLI--PG-------------VSTPSE-LMLGMELGLRTFKFFPAEASG-----GVKML  146 (212)
T ss_pred             -CHHHHHHHH-HcC-------CCEe--CC-------------CCCHHH-HHHHHHCCCCEEEEccchhcc-----CHHHH
Confidence             266665544 333       2221  11             124555 888999999998776643222     44667


Q ss_pred             HHHhhc-CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcc----cHHHHHHHHHh
Q 021156          250 ALLGKY-SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNL----AYKDVVAWHAQ  309 (316)
Q Consensus       250 ~~l~~~-~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~----~~~~~~~~~~~  309 (316)
                      +.++.. .++|++..|||.. +++.++++.|  ...++.|+.+  +....    .++++.+.+++
T Consensus       147 k~l~~p~p~~~~~ptGGV~~-~ni~~~l~ag--~v~~vggs~L--~~~~~~~~~~~~~i~~~a~~  206 (212)
T PRK05718        147 KALAGPFPDVRFCPTGGISP-ANYRDYLALP--NVLCIGGSWM--VPKDAIENGDWDRITRLARE  206 (212)
T ss_pred             HHHhccCCCCeEEEeCCCCH-HHHHHHHhCC--CEEEEEChHh--CCcchhccccHHHHHHHHHH
Confidence            777653 5699999999987 8999999998  5566668888  65442    34555554444

>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]

Probab=97.89  E-value=4.3e-05  Score=74.13  Aligned_cols=115  Identities=14%  Similarity=0.200  Sum_probs=92.0

Q ss_pred             eCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCcc
Q 021156          160 VTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEG  239 (316)
Q Consensus       160 igt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG  239 (316)
                      .|.+.+.+    |+.+..+.... -..+.+++++|++       .-.    +.-+.+++.+++...|+..|-+|.+++|+
T Consensus       126 mgaalLt~----~dkl~~IL~sL-vk~~~vpvtckIR-------~L~----s~edtL~lv~ri~~tgi~ai~vh~rt~d~  189 (477)
T KOG2334|consen  126 MGAALLTD----PDKLVAILYSL-VKGNKVPVTCKIR-------LLD----SKEDTLKLVKRICATGIAAITVHCRTRDE  189 (477)
T ss_pred             CCchhhcC----HHHHHHHHHHH-HhcCcccceeEEE-------ecC----CcccHHHHHHHHHhcCCceEEEEeecccc
Confidence            47778887    88888887766 2345678887642       211    12257899999999999999999999999


Q ss_pred             ccCCC-CHHHHHHHhhcCC-CcEEEEeCCCC---HHHHHHHHHhCCCcCEEEEccch
Q 021156          240 KKLGI-DDELVALLGKYSP-IPVTYAGGVTT---MADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       240 ~~~G~-d~eli~~l~~~~~-iPVIasGGI~s---~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      .-+.+ +.+.++++...+. +|||++||..+   ..|+....+.. +.++|||+++.
T Consensus       190 r~~~~~~~~~i~~i~~~~~~V~vi~ng~~~~~e~y~Di~~~~~~~-~~~~vmiAR~A  245 (477)
T KOG2334|consen  190 RNQEPATKDYIREIAQACQMVPVIVNGGSMDIEQYSDIEDFQEKT-GADSVMIARAA  245 (477)
T ss_pred             CCCCCCCHHHHHHHHHHhccceEeeccchhhHHhhhhHHHHHHHh-ccchhhhhHhh
Confidence            98877 8889999998876 99999999999   77888777765 58999999876

>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences

Probab=97.89  E-value=6.4e-05  Score=68.09  Aligned_cols=84  Identities=17%  Similarity=0.149  Sum_probs=62.9

Q ss_pred             HHHHHHHHHcCCCEEEEeecCCccccCCC-CHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhc
Q 021156          216 DERVLDFLASYADEFLVHGVDVEGKKLGI-DDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIF  294 (316)
Q Consensus       216 ~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~-d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~  294 (316)
                      .-.++++++.||..+.-.. +--|+.+|. |...++.+.+..++|||+-+||+++.|...+.++|  +++|++.+|+..-
T Consensus       134 ~v~akrL~d~GcaavMPlg-sPIGSg~Gi~n~~~l~~i~~~~~vPvIvDAGiG~pSdaa~AMElG--~daVLvNTAiA~A  210 (247)
T PF05690_consen  134 PVLAKRLEDAGCAAVMPLG-SPIGSGRGIQNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELG--ADAVLVNTAIAKA  210 (247)
T ss_dssp             HHHHHHHHHTT-SEBEEBS-SSTTT---SSTHHHHHHHHHHGSSSBEEES---SHHHHHHHHHTT---SEEEESHHHHTS
T ss_pred             HHHHHHHHHCCCCEEEecc-cccccCcCCCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcC--CceeehhhHHhcc
Confidence            3589999999999764333 567999999 89999999988899999999999999999999999  9999999999444


Q ss_pred             cCcccHHH
Q 021156          295 GGNLAYKD  302 (316)
Q Consensus       295 ~g~~~~~~  302 (316)
                      .+|....+
T Consensus       211 ~dPv~MA~  218 (247)
T PF05690_consen  211 KDPVAMAR  218 (247)
T ss_dssp             SSHHHHHH
T ss_pred             CCHHHHHH
Confidence            45544433

ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.

>CHL00162 thiG thiamin biosynthesis protein G; Validated

Probab=97.89  E-value=7.8e-05  Score=68.26  Aligned_cols=78  Identities=14%  Similarity=0.124  Sum_probs=67.1

Q ss_pred             HHHHHHHHcCCCEEEEeecCCccccCCC-CHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhcc
Q 021156          217 ERVLDFLASYADEFLVHGVDVEGKKLGI-DDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFG  295 (316)
Q Consensus       217 e~a~~~~~~Ga~~ilvtdi~~dG~~~G~-d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~  295 (316)
                      -.++++++.||..+.-.. +--|+.+|. |...++.+.+..++||+..+||++.+|+..+.++|  ++||.+++|+..-.
T Consensus       149 v~a~rLed~Gc~aVMPlg-sPIGSg~Gl~n~~~l~~i~e~~~vpVivdAGIgt~sDa~~AmElG--aDgVL~nSaIakA~  225 (267)
T CHL00162        149 MLAKHLEDIGCATVMPLG-SPIGSGQGLQNLLNLQIIIENAKIPVIIDAGIGTPSEASQAMELG--ASGVLLNTAVAQAK  225 (267)
T ss_pred             HHHHHHHHcCCeEEeecc-CcccCCCCCCCHHHHHHHHHcCCCcEEEeCCcCCHHHHHHHHHcC--CCEEeecceeecCC
Confidence            589999999999764332 556899999 99999999998899999999999999999999999  99999999993333


Q ss_pred             Cc
Q 021156          296 GN  297 (316)
Q Consensus       296 g~  297 (316)
                      ++
T Consensus       226 dP  227 (267)
T CHL00162        226 NP  227 (267)
T ss_pred             CH
Confidence            33

>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF

Probab=97.88  E-value=0.0013  Score=58.89  Aligned_cols=164  Identities=18%  Similarity=0.146  Sum_probs=101.8

Q ss_pred             CHHHHHHHHHHcCCCcceEEE-ec--CCcccHHHHHHHHHhCCCcEEE-----ecCCC-H--------HHHHHHHHcCCC
Q 021156           94 SAAEFANLYKEDGLTGGHAIM-LG--ADPLSKAAAIEALHAYPGGLQV-----GGGIN-S--------DNSLSYIEEGAT  156 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvD-Ld--a~~~~~~~i~~~v~~~~~pl~v-----GGGIr-~--------e~~~~~l~~Gad  156 (316)
                      ++. -|..-.+.|++++.+.. |.  +..+....+..+.+..++|+.|     +|... +        +|++.+.++|++
T Consensus         9 s~~-~a~~A~~~GAdRiELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~~Gad   87 (201)
T PF03932_consen    9 SLE-DALAAEAGGADRIELCSNLEVGGLTPSLGLIRQAREAVDIPVHVMIRPRGGDFVYSDEEIEIMKEDIRMLRELGAD   87 (201)
T ss_dssp             SHH-HHHHHHHTT-SEEEEEBTGGGT-B---HHHHHHHHHHTTSEEEEE--SSSS-S---HHHHHHHHHHHHHHHHTT-S
T ss_pred             CHH-HHHHHHHcCCCEEEECCCccCCCcCcCHHHHHHHHhhcCCceEEEECCCCCCccCCHHHHHHHHHHHHHHHHcCCC
Confidence            454 44445678999999986 33  2246666676666778888877     77664 2        357777889999


Q ss_pred             EEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecC
Q 021156          157 HVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVD  236 (316)
Q Consensus       157 ~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~  236 (316)
                      -+|+|..... +++|.+.++++.+..++-.+              +..+.+...  .++.+....+.++|+++|+ |+=.
T Consensus        88 G~VfG~L~~d-g~iD~~~~~~Li~~a~~~~~--------------tFHRAfD~~--~d~~~al~~L~~lG~~rVL-TSGg  149 (201)
T PF03932_consen   88 GFVFGALTED-GEIDEEALEELIEAAGGMPV--------------TFHRAFDEV--PDPEEALEQLIELGFDRVL-TSGG  149 (201)
T ss_dssp             EEEE--BETT-SSB-HHHHHHHHHHHTTSEE--------------EE-GGGGGS--STHHHHHHHHHHHT-SEEE-ESTT
T ss_pred             eeEEEeECCC-CCcCHHHHHHHHHhcCCCeE--------------EEeCcHHHh--CCHHHHHHHHHhcCCCEEE-CCCC
Confidence            9999997654 68999999999987752222              222233322  2577888899999999987 4423


Q ss_pred             CccccCCCCHHHHHHHhhc--CCCcEEEEeCCCCHHHHHHHHH-hC
Q 021156          237 VEGKKLGIDDELVALLGKY--SPIPVTYAGGVTTMADLEKIKV-AG  279 (316)
Q Consensus       237 ~dG~~~G~d~eli~~l~~~--~~iPVIasGGI~s~eDi~~l~~-~G  279 (316)
                      ......  +.+.++++.+.  .++.|+++|||+. +.+..+.+ .|
T Consensus       150 ~~~a~~--g~~~L~~lv~~a~~~i~Im~GgGv~~-~nv~~l~~~tg  192 (201)
T PF03932_consen  150 APTALE--GIENLKELVEQAKGRIEIMPGGGVRA-ENVPELVEETG  192 (201)
T ss_dssp             SSSTTT--CHHHHHHHHHHHTTSSEEEEESS--T-TTHHHHHHHHT
T ss_pred             CCCHHH--HHHHHHHHHHHcCCCcEEEecCCCCH-HHHHHHHHhhC
Confidence            322223  56778887553  4688999999987 56777776 55

A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.

>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea

Probab=97.87  E-value=0.00054  Score=62.24  Aligned_cols=188  Identities=17%  Similarity=0.067  Sum_probs=102.7

Q ss_pred             ccCHHHHHHHHHHcCCCcceEEE--ecCCc----ccHHHHHHHHH--hCCCcEEEecCCC--HHHHHHHHHcCCCEE--E
Q 021156           92 DKSAAEFANLYKEDGLTGGHAIM--LGADP----LSKAAAIEALH--AYPGGLQVGGGIN--SDNSLSYIEEGATHV--I  159 (316)
Q Consensus        92 ~~~p~e~a~~~~~~G~~~l~lvD--Lda~~----~~~~~i~~~v~--~~~~pl~vGGGIr--~e~~~~~l~~Gad~V--V  159 (316)
                      ..+|.++++.+.+.|++.+.+--  +....    .....+.+...  .++.|   .--+.  ..+++++++.||+-|  +
T Consensus        20 ~~d~~~~~~~~~~~g~~av~v~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~p---~~~~~~~~~~v~~a~~~Ga~~v~~~   96 (235)
T cd00958          20 LEDPEETVKLAAEGGADAVALTKGIARAYGREYAGDIPLIVKLNGSTSLSPK---DDNDKVLVASVEDAVRLGADAVGVT   96 (235)
T ss_pred             ccCHHHHHHHHHhcCCCEEEeChHHHHhcccccCCCCcEEEEECCCCCCCCC---CCCchhhhcCHHHHHHCCCCEEEEE
Confidence            35899999999999988655430  00000    00000000000  01111   11122  255999999999976  4


Q ss_pred             eCCeeecCCCCCHHHHHHHH---HHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecC
Q 021156          160 VTSYVFNNGQMDLERLKDLV---RVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVD  236 (316)
Q Consensus       160 igt~~~~~~~~~~eli~ei~---~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~  236 (316)
                      +.--.....+ ..+.+.++.   +.+| -.+++....   +|. .+  ..  ..+.-.....++.+.+.|++.+-+..  
T Consensus        97 ~~~~~~~~~~-~~~~i~~v~~~~~~~g-~~~iie~~~---~g~-~~--~~--~~~~~~i~~~~~~a~~~GaD~Ik~~~--  164 (235)
T cd00958          97 VYVGSEEERE-MLEELARVAAEAHKYG-LPLIAWMYP---RGP-AV--KN--EKDPDLIAYAARIGAELGADIVKTKY--  164 (235)
T ss_pred             EecCCchHHH-HHHHHHHHHHHHHHcC-CCEEEEEec---cCC-cc--cC--ccCHHHHHHHHHHHHHHCCCEEEecC--
Confidence            4222111100 022344443   3454 234443322   121 00  00  11111122236778899999765421  


Q ss_pred             CccccCCCCHHHHHHHhhcCCCcEEEEeCC--CCHHH----HHHHHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156          237 VEGKKLGIDDELVALLGKYSPIPVTYAGGV--TTMAD----LEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVA  305 (316)
Q Consensus       237 ~dG~~~G~d~eli~~l~~~~~iPVIasGGI--~s~eD----i~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~  305 (316)
                            ..|++.++++.+.+++||+++||+  .+.+|    +.++.+.|  ++|+.+|+++  +..+ ++.+..+
T Consensus       165 ------~~~~~~~~~i~~~~~~pvv~~GG~~~~~~~~~l~~~~~~~~~G--a~gv~vg~~i--~~~~-dp~~~~~  228 (235)
T cd00958         165 ------TGDAESFKEVVEGCPVPVVIAGGPKKDSEEEFLKMVYDAMEAG--AAGVAVGRNI--FQRP-DPVAMLR  228 (235)
T ss_pred             ------CCCHHHHHHHHhcCCCCEEEeCCCCCCCHHHHHHHHHHHHHcC--CcEEEechhh--hcCC-CHHHHHH
Confidence                  127889999998889999999997  56665    88889888  9999999999  6544 4455444

Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.

>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]

Probab=97.86  E-value=0.0013  Score=59.76  Aligned_cols=191  Identities=20%  Similarity=0.234  Sum_probs=119.4

Q ss_pred             HHHHHHHHHcCCCcceEEEecCCc-------ccHHHHHHHH----HhCCCcEEEecCCC-H-HH----HHHHHHcCCCEE
Q 021156           96 AEFANLYKEDGLTGGHAIMLGADP-------LSKAAAIEAL----HAYPGGLQVGGGIN-S-DN----SLSYIEEGATHV  158 (316)
Q Consensus        96 ~e~a~~~~~~G~~~l~lvDLda~~-------~~~~~i~~~v----~~~~~pl~vGGGIr-~-e~----~~~~l~~Gad~V  158 (316)
                      +.=|+.|++.|++.+.+=.-.-.+       .....|-.++    +.+.+|+    ||+ . .|    +.-+...||+.|
T Consensus        37 ~~dA~~leegG~DavivEN~gD~Pf~k~v~~~tvaaMa~iv~~v~r~v~iPv----GvNVLrNd~vaA~~IA~a~gA~FI  112 (263)
T COG0434          37 VRDAAALEEGGVDAVIVENYGDAPFLKDVGPETVAAMAVIVREVVREVSIPV----GVNVLRNDAVAALAIAYAVGADFI  112 (263)
T ss_pred             HHHHHHHHhCCCcEEEEeccCCCCCCCCCChHHHHHHHHHHHHHHHhccccc----eeeeeccccHHHHHHHHhcCCCEE
Confidence            345677888899988776654221       2222333333    3455554    554 2 23    333345689976


Q ss_pred             EeCCee---ecC-CCC--CHHHHHHHHHHhcCce--EEEeeeeeecCCeeEEEeCCcceecccCHHHHHHH-HHHcCCCE
Q 021156          159 IVTSYV---FNN-GQM--DLERLKDLVRVVGKQR--LVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLD-FLASYADE  229 (316)
Q Consensus       159 Vigt~~---~~~-~~~--~~eli~ei~~~~G~~~--IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~-~~~~Ga~~  229 (316)
                      =++..+   ..| |-+  +...+.+...+.| .+  +.+.+++|  ++.         -....++.+.++. .+..+++.
T Consensus       113 RVN~~tg~~~tdqGiieg~A~e~~r~r~~L~-~~v~vlADv~VK--Ha~---------~l~~~~~~~~v~dtver~~aDa  180 (263)
T COG0434         113 RVNVLTGAYATDQGIIEGNAAELARYRARLG-SRVKVLADVHVK--HAV---------HLGNRSLEEAVKDTVERGLADA  180 (263)
T ss_pred             EEEeeeceEecccceecchHHHHHHHHHhcc-CCcEEEeecchh--ccc---------ccCCcCHHHHHHHHHHccCCCE
Confidence            654322   222 322  2334455556665 44  44445554  442         0112257777877 44455999


Q ss_pred             EEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhcc-C----cccHHHHH
Q 021156          230 FLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFG-G----NLAYKDVV  304 (316)
Q Consensus       230 ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~-g----~~~~~~~~  304 (316)
                      +++|.-.   |...+|.+.++..++.++.||+++-|+. ++.+.++++.   ++|+|||+.+  =+ |    +++.+.+.
T Consensus       181 VI~tG~~---TG~~~d~~el~~a~~~~~~pvlvGSGv~-~eN~~~~l~~---adG~IvgT~l--K~~G~~~n~VD~~Rv~  251 (263)
T COG0434         181 VIVTGSR---TGSPPDLEELKLAKEAVDTPVLVGSGVN-PENIEELLKI---ADGVIVGTSL--KKGGVTWNPVDLERVR  251 (263)
T ss_pred             EEEeccc---CCCCCCHHHHHHHHhccCCCEEEecCCC-HHHHHHHHHH---cCceEEEEEE--ccCCEecCccCHHHHH
Confidence            9988753   5567899999999999999999999975 5778888887   6999999998  33 3    56777777


Q ss_pred             HHHHhhc
Q 021156          305 AWHAQQE  311 (316)
Q Consensus       305 ~~~~~~~  311 (316)
                      ++.+..+
T Consensus       252 ~~v~~a~  258 (263)
T COG0434         252 RFVEAAR  258 (263)
T ss_pred             HHHHHHH
Confidence            7766544

>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain

Probab=97.86  E-value=0.00011  Score=71.13  Aligned_cols=72  Identities=21%  Similarity=0.231  Sum_probs=58.9

Q ss_pred             HHHHHHHHHcCCCEEEE--eecCCccccCCC-CHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccc
Q 021156          216 DERVLDFLASYADEFLV--HGVDVEGKKLGI-DDELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSA  290 (316)
Q Consensus       216 ~e~a~~~~~~Ga~~ilv--tdi~~dG~~~G~-d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~A  290 (316)
                      .+.++.+.+.|++.|++  |.- +. ...++ .++.+.++++.+  ++|||++|||++-.|+.+++.+|  +++|++|++
T Consensus       232 ~~dA~~a~~~G~d~I~vsnhGG-r~-ld~~~~~~~~l~~i~~a~~~~i~vi~dGGIr~g~Di~kaLalG--A~~V~iGr~  307 (351)
T cd04737         232 PEDADVAINAGADGIWVSNHGG-RQ-LDGGPASFDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKALASG--ADAVAVGRP  307 (351)
T ss_pred             HHHHHHHHHcCCCEEEEeCCCC-cc-CCCCchHHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcC--CCEEEECHH
Confidence            47889999999999988  431 11 11344 678888887766  69999999999999999999998  999999998


Q ss_pred             h
Q 021156          291 L  291 (316)
Q Consensus       291 l  291 (316)
                      +
T Consensus       308 ~  308 (351)
T cd04737         308 V  308 (351)
T ss_pred             H
Confidence            8

LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2

Probab=97.85  E-value=0.00013  Score=70.18  Aligned_cols=89  Identities=19%  Similarity=0.228  Sum_probs=66.4

Q ss_pred             CHHHHHHHHHHcCCCEEEEeec--CC-----------ccccCCC-----CHHHHHHHhhcC--CCcEEEEeCCCCHHHHH
Q 021156          214 YLDERVLDFLASYADEFLVHGV--DV-----------EGKKLGI-----DDELVALLGKYS--PIPVTYAGGVTTMADLE  273 (316)
Q Consensus       214 ~~~e~a~~~~~~Ga~~ilvtdi--~~-----------dG~~~G~-----d~eli~~l~~~~--~iPVIasGGI~s~eDi~  273 (316)
                      ++.++++.+.+.|++.+++++.  ++           -|-++|+     -+++++.+.+.+  ++|+|+.|||.+.+|+.
T Consensus       225 ~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~  304 (335)
T TIGR01036       225 DLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAELQGRLPIIGVGGISSAQDAL  304 (335)
T ss_pred             HHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHH
Confidence            4778999999999999876442  11           2333444     234666776655  68999999999999999


Q ss_pred             HHHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156          274 KIKVAGIGRVDVTVGSALDIFGGNLAYKDVVA  305 (316)
Q Consensus       274 ~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~  305 (316)
                      +.+.+|  ++.|.+|+|+ .+.|+-.++++.+
T Consensus       305 e~l~aG--A~~Vqv~ta~-~~~Gp~~~~~i~~  333 (335)
T TIGR01036       305 EKIRAG--ASLLQIYSGF-IYWGPPLVKEIVK  333 (335)
T ss_pred             HHHHcC--CcHHHhhHHH-HHhCchHHHHHHh
Confidence            999998  8999999998 2337766666543

The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.

>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]

Probab=97.83  E-value=0.0001  Score=70.98  Aligned_cols=74  Identities=23%  Similarity=0.311  Sum_probs=64.6

Q ss_pred             HHHHHHHHHcCCCEEEEeecCCccccCC----CC-HHHHHHHhhcCC-CcEEEEeCCCCHHHHHHHHHhCCCcCEEEEcc
Q 021156          216 DERVLDFLASYADEFLVHGVDVEGKKLG----ID-DELVALLGKYSP-IPVTYAGGVTTMADLEKIKVAGIGRVDVTVGS  289 (316)
Q Consensus       216 ~e~a~~~~~~Ga~~ilvtdi~~dG~~~G----~d-~eli~~l~~~~~-iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~  289 (316)
                      ..+++.+++.|++.++...-+.-|+..+    +. +.++.++.+.++ +|||++|||.+-+++..++.+|  +++|-+|+
T Consensus       137 ~~~A~~~~~~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~~~iPViAAGGI~dg~~i~AAlalG--A~gVq~GT  214 (336)
T COG2070         137 VREALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAVDGIPVIAAGGIADGRGIAAALALG--ADGVQMGT  214 (336)
T ss_pred             HHHHHHHHhCCCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHhcCCCEEEecCccChHHHHHHHHhc--cHHHHhhh
Confidence            3689999999999999988877666442    22 458999999988 9999999999999999999999  99999999


Q ss_pred             ch
Q 021156          290 AL  291 (316)
Q Consensus       290 Al  291 (316)
                      ++
T Consensus       215 ~F  216 (336)
T COG2070         215 RF  216 (336)
T ss_pred             hh
Confidence            88

>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed

Probab=97.83  E-value=0.00048  Score=65.55  Aligned_cols=154  Identities=16%  Similarity=0.043  Sum_probs=91.8

Q ss_pred             CCcEEEe-cCCCHHH----HHHHHHcC-CCEEEeCCeeecC--C-C--CCHHHHHHHHHHhcCceEEEeeeeeecCCeeE
Q 021156          133 PGGLQVG-GGINSDN----SLSYIEEG-ATHVIVTSYVFNN--G-Q--MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYA  201 (316)
Q Consensus       133 ~~pl~vG-GGIr~e~----~~~~l~~G-ad~VVigt~~~~~--~-~--~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~  201 (316)
                      +.|+++. -|.+.++    ++.+-++| ||.+-++...-+-  + .  .+++.+.++.+.. ++.+-+.+-+|       
T Consensus        92 ~~pvI~Si~G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~~~~~~g~d~~~~~~i~~~v-~~~~~~Pv~vK-------  163 (310)
T PRK02506         92 NKPHFLSVVGLSPEETHTILKKIQASDFNGLVELNLSCPNVPGKPQIAYDFETTEQILEEV-FTYFTKPLGVK-------  163 (310)
T ss_pred             CCCEEEEEEeCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCCCccccccCHHHHHHHHHHH-HHhcCCccEEe-------
Confidence            4788766 5665333    44444577 9998887654311  1 1  1478888888776 33332333333       


Q ss_pred             EEeCCcceecccCHHHHHHHH---HHcCCCEEEEe---------ecCCc----------cccCCC-----CHHHHHHHhh
Q 021156          202 IVTDRWQKFSDVYLDERVLDF---LASYADEFLVH---------GVDVE----------GKKLGI-----DDELVALLGK  254 (316)
Q Consensus       202 v~~~gw~~~~~~~~~e~a~~~---~~~Ga~~ilvt---------di~~d----------G~~~G~-----d~eli~~l~~  254 (316)
                        +.-     ..+..++++.+   ...|++.+..+         |++..          |-++|+     -+.++.++.+
T Consensus       164 --lsp-----~~~~~~~a~~~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~  236 (310)
T PRK02506        164 --LPP-----YFDIVHFDQAAAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIGGDYIKPTALANVRAFYQ  236 (310)
T ss_pred             --cCC-----CCCHHHHHHHHHHhCcCceEEEEEeccCCCceEEecCCCCccccCCCCCCcCCchhccHHHHHHHHHHHH
Confidence              111     11233444333   34455554321         22111          222444     2345666666


Q ss_pred             cC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhcc-CcccHHHHHH
Q 021156          255 YS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFG-GNLAYKDVVA  305 (316)
Q Consensus       255 ~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~-g~~~~~~~~~  305 (316)
                      .+  ++|||++|||.+.+|+.+.+.+|  ++.|.+++++  +. |+-.+.++.+
T Consensus       237 ~~~~~ipIig~GGI~s~~da~e~i~aG--A~~Vqv~ta~--~~~gp~~~~~i~~  286 (310)
T PRK02506        237 RLNPSIQIIGTGGVKTGRDAFEHILCG--ASMVQVGTAL--HKEGPAVFERLTK  286 (310)
T ss_pred             hcCCCCCEEEECCCCCHHHHHHHHHcC--CCHHhhhHHH--HHhChHHHHHHHH
Confidence            65  69999999999999999999999  8999999998  54 7765666544

>cd00945 Aldolase_Class_I Class I aldolases

Probab=97.82  E-value=0.0011  Score=57.59  Aligned_cols=169  Identities=18%  Similarity=0.063  Sum_probs=100.2

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHH-HhC---CCcEEEecCCC--------H-HHHHHHHHcCCCEEEe
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEAL-HAY---PGGLQVGGGIN--------S-DNSLSYIEEGATHVIV  160 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v-~~~---~~pl~vGGGIr--------~-e~~~~~l~~Gad~VVi  160 (316)
                      .+.++++.+.+.|++++.+-   +      .+++.+ +..   .+|+.+|-|-.        . +.++.+.++|||.+.+
T Consensus        14 ~~~~~~~~~~~~gv~gi~~~---g------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v   84 (201)
T cd00945          14 DIAKLCDEAIEYGFAAVCVN---P------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDV   84 (201)
T ss_pred             HHHHHHHHHHHhCCcEEEEC---H------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEE
Confidence            46677787878887754332   1      333333 322   47877665542        2 6789999999999988


Q ss_pred             CCeeecCCC----CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecC
Q 021156          161 TSYVFNNGQ----MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVD  236 (316)
Q Consensus       161 gt~~~~~~~----~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~  236 (316)
                      -......+.    ...+.++++.+.. +..+-+.+...          .++. .+.....+.++.+.+.|++.+=.+.-.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~pv~iy~~----------p~~~-~~~~~~~~~~~~~~~~g~~~iK~~~~~  152 (201)
T cd00945          85 VINIGSLKEGDWEEVLEEIAAVVEAA-DGGLPLKVILE----------TRGL-KTADEIAKAARIAAEAGADFIKTSTGF  152 (201)
T ss_pred             eccHHHHhCCCHHHHHHHHHHHHHHh-cCCceEEEEEE----------CCCC-CCHHHHHHHHHHHHHhCCCEEEeCCCC
Confidence            544332100    0024444555443 11222333221          1111 011123344455667888876432211


Q ss_pred             CccccCCCCHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEc
Q 021156          237 VEGKKLGIDDELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVG  288 (316)
Q Consensus       237 ~dG~~~G~d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG  288 (316)
                         ...+.|++.++++.+..  ++|+++.||+.+.+.+..++..|  ++|+++|
T Consensus       153 ---~~~~~~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~~~G--a~g~~~g  201 (201)
T cd00945         153 ---GGGGATVEDVKLMKEAVGGRVGVKAAGGIKTLEDALAAIEAG--ADGIGTS  201 (201)
T ss_pred             ---CCCCCCHHHHHHHHHhcccCCcEEEECCCCCHHHHHHHHHhc--cceeecC
Confidence               11345899999988765  67999999999999999999998  8888875

The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.

>PRK14057 epimerase; Provisional

Probab=97.82  E-value=0.0046  Score=57.17  Aligned_cols=183  Identities=11%  Similarity=0.010  Sum_probs=115.9

Q ss_pred             HHHHHHHHcCCCcceEEEecCCc-cc---HHHHHHHHHhCCCcEEEecCC-CHH-HHHHHHHcCCCEEEeCCeeecCCCC
Q 021156           97 EFANLYKEDGLTGGHAIMLGADP-LS---KAAAIEALHAYPGGLQVGGGI-NSD-NSLSYIEEGATHVIVTSYVFNNGQM  170 (316)
Q Consensus        97 e~a~~~~~~G~~~l~lvDLda~~-~~---~~~i~~~v~~~~~pl~vGGGI-r~e-~~~~~l~~Gad~VVigt~~~~~~~~  170 (316)
                      +..+.+++.|++++|+==+|+.. +|   -+.+++.++. ..|+.|===+ +.+ -++.+.++|||.|.+-.++..+   
T Consensus        36 ~el~~l~~~g~d~lHiDVMDG~FVPNitfGp~~i~~i~~-~~p~DvHLMV~~P~~~i~~~~~aGad~It~H~Ea~~~---  111 (254)
T PRK14057         36 RYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAVGQLPQ-TFIKDVHLMVADQWTAAQACVKAGAHCITLQAEGDIH---  111 (254)
T ss_pred             HHHHHHHHCCCCEEEEeccCCccCCccccCHHHHHHhcc-CCCeeEEeeeCCHHHHHHHHHHhCCCEEEEeeccccC---
Confidence            55666777899999997788763 22   2334555554 3443222222 454 4889999999999998886555   


Q ss_pred             CHHHHHHHHHHhcCc------eEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCC
Q 021156          171 DLERLKDLVRVVGKQ------RLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGI  244 (316)
Q Consensus       171 ~~eli~ei~~~~G~~------~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~  244 (316)
                       +...-+..+..|..      .+.+.+-++  -            .   .+.+.++.+.+. ++.+++..++-.-..+.+
T Consensus       112 -~~~~l~~Ir~~G~k~~~~~~~~kaGlAln--P------------~---Tp~e~i~~~l~~-vD~VLvMtV~PGfgGQ~F  172 (254)
T PRK14057        112 -LHHTLSWLGQQTVPVIGGEMPVIRGISLC--P------------A---TPLDVIIPILSD-VEVIQLLAVNPGYGSKMR  172 (254)
T ss_pred             -HHHHHHHHHHcCCCcccccccceeEEEEC--C------------C---CCHHHHHHHHHh-CCEEEEEEECCCCCchhc
Confidence             54444444555521      011222221  0            1   245566666664 999999998776556666


Q ss_pred             CHHHHHHHh---hc-----CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHH
Q 021156          245 DDELVALLG---KY-----SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHA  308 (316)
Q Consensus       245 d~eli~~l~---~~-----~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~  308 (316)
                      ..+.+++++   +.     .++.+.+=|||+. +.+.++.++|  ++-++.|+++  |.. -++++..+..+
T Consensus       173 i~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~-~ti~~l~~aG--ad~~V~GSal--F~~-~d~~~~i~~l~  238 (254)
T PRK14057        173 SSDLHERVAQLLCLLGDKREGKIIVIDGSLTQ-DQLPSLIAQG--IDRVVSGSAL--FRD-DRLVENTRSWR  238 (254)
T ss_pred             cHHHHHHHHHHHHHHHhcCCCceEEEECCCCH-HHHHHHHHCC--CCEEEEChHh--hCC-CCHHHHHHHHH
Confidence            655554443   22     2466899999876 5899999998  8999999999  753 24566555444

>PRK09722 allulose-6-phosphate 3-epimerase; Provisional

Probab=97.81  E-value=0.0073  Score=55.13  Aligned_cols=180  Identities=15%  Similarity=0.101  Sum_probs=113.8

Q ss_pred             HHHHHHHcCCCcceEEEecCCc-cc---HHHHHHHHHh-CCCcEEEecCC-CHH-HHHHHHHcCCCEEEeCCeee-cCCC
Q 021156           98 FANLYKEDGLTGGHAIMLGADP-LS---KAAAIEALHA-YPGGLQVGGGI-NSD-NSLSYIEEGATHVIVTSYVF-NNGQ  169 (316)
Q Consensus        98 ~a~~~~~~G~~~l~lvDLda~~-~~---~~~i~~~v~~-~~~pl~vGGGI-r~e-~~~~~l~~Gad~VVigt~~~-~~~~  169 (316)
                      -++.+.. |++++|+==+|+.. +|   -+.+++.+++ .+.|+.|===+ +.+ -++.+.++||+.+.+-.+.. .+  
T Consensus        20 el~~l~~-g~d~lH~DiMDG~FVPN~tfg~~~i~~ir~~t~~~~DvHLMv~~P~~~i~~~~~aGad~it~H~Ea~~~~--   96 (229)
T PRK09722         20 QIEFLNS-KADYFHIDIMDGHFVPNLTLSPFFVSQVKKLASKPLDVHLMVTDPQDYIDQLADAGADFITLHPETINGQ--   96 (229)
T ss_pred             HHHHHHh-CCCEEEEecccCccCCCcccCHHHHHHHHhcCCCCeEEEEEecCHHHHHHHHHHcCCCEEEECccCCcch--
Confidence            3444444 89999987788763 22   2335566654 45554333223 354 48999999999999988864 33  


Q ss_pred             CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHH
Q 021156          170 MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELV  249 (316)
Q Consensus       170 ~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli  249 (316)
                        +..+-+..+..| -+.-+++...                   .+.+....+.+. ++.+++..++-....+.+..+.+
T Consensus        97 --~~~~i~~Ik~~G-~kaGlalnP~-------------------T~~~~l~~~l~~-vD~VLvMsV~PGf~GQ~fi~~~l  153 (229)
T PRK09722         97 --AFRLIDEIRRAG-MKVGLVLNPE-------------------TPVESIKYYIHL-LDKITVMTVDPGFAGQPFIPEML  153 (229)
T ss_pred             --HHHHHHHHHHcC-CCEEEEeCCC-------------------CCHHHHHHHHHh-cCEEEEEEEcCCCcchhccHHHH
Confidence              544434445565 3444444331                   234555556553 89999999887545566666555


Q ss_pred             HHHhh---c-----CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEcc-chhhccCcccHHHHHHHHH
Q 021156          250 ALLGK---Y-----SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGS-ALDIFGGNLAYKDVVAWHA  308 (316)
Q Consensus       250 ~~l~~---~-----~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~-Al~~~~g~~~~~~~~~~~~  308 (316)
                      +++++   .     .++.+.+=|||+ .+.+.++.++|  ++.+++|+ ++  |...-++++.++.++
T Consensus       154 ~KI~~lr~~~~~~~~~~~IeVDGGI~-~~~i~~~~~aG--ad~~V~Gss~i--F~~~~d~~~~i~~l~  216 (229)
T PRK09722        154 DKIAELKALRERNGLEYLIEVDGSCN-QKTYEKLMEAG--ADVFIVGTSGL--FNLDEDIDEAWDIMT  216 (229)
T ss_pred             HHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHcC--CCEEEEChHHH--cCCCCCHHHHHHHHH
Confidence            55432   1     235689999998 57899999998  89999996 48  752224555554443

>TIGR01182 eda Entner-Doudoroff aldolase

Probab=97.80  E-value=0.0028  Score=56.83  Aligned_cols=171  Identities=18%  Similarity=0.234  Sum_probs=112.5

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHH-hCCCcEEEecCC-C-HHHHHHHHHcCCCEEEeCCeeecCCCC
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALH-AYPGGLQVGGGI-N-SDNSLSYIEEGATHVIVTSYVFNNGQM  170 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~-~~~~pl~vGGGI-r-~e~~~~~l~~Gad~VVigt~~~~~~~~  170 (316)
                      +..++++.+.+.|++-+-+..   ..++....++.++ +.+ .+.+|.|- . .++++.+.++||+.+|--+.   +   
T Consensus        21 ~a~~~~~al~~~Gi~~iEit~---~t~~a~~~i~~l~~~~~-~~~vGAGTVl~~~~a~~a~~aGA~FivsP~~---~---   90 (204)
T TIGR01182        21 DALPLAKALIEGGLRVLEVTL---RTPVALDAIRLLRKEVP-DALIGAGTVLNPEQLRQAVDAGAQFIVSPGL---T---   90 (204)
T ss_pred             HHHHHHHHHHHcCCCEEEEeC---CCccHHHHHHHHHHHCC-CCEEEEEeCCCHHHHHHHHHcCCCEEECCCC---C---
Confidence            556788888888876444433   2234444455554 454 47777776 4 59999999999999854332   2   


Q ss_pred             CHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHH
Q 021156          171 DLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVA  250 (316)
Q Consensus       171 ~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~  250 (316)
                       ++.++.. +++|    ++.+-     |        -     .++ ..+..+.+.|++.+=+...+.   +.|+  ..++
T Consensus        91 -~~v~~~~-~~~~----i~~iP-----G--------~-----~Tp-tEi~~A~~~Ga~~vKlFPA~~---~GG~--~yik  140 (204)
T TIGR01182        91 -PELAKHA-QDHG----IPIIP-----G--------V-----ATP-SEIMLALELGITALKLFPAEV---SGGV--KMLK  140 (204)
T ss_pred             -HHHHHHH-HHcC----CcEEC-----C--------C-----CCH-HHHHHHHHCCCCEEEECCchh---cCCH--HHHH
Confidence             6666554 4554    22221     1        1     123 456677789999886666432   2234  4677


Q ss_pred             HHhh-cCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcc----cHHHHHHHHHh
Q 021156          251 LLGK-YSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNL----AYKDVVAWHAQ  309 (316)
Q Consensus       251 ~l~~-~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~----~~~~~~~~~~~  309 (316)
                      .++. ..++|++..|||.. +.+.+.++.|  +.+|.+|+.+  +....    .++++.+.+++
T Consensus       141 al~~plp~i~~~ptGGV~~-~N~~~~l~aG--a~~vg~Gs~L--~~~~~~~~~~~~~i~~~a~~  199 (204)
T TIGR01182       141 ALAGPFPQVRFCPTGGINL-ANVRDYLAAP--NVACGGGSWL--VPKDLIAAGDWDEITRLARE  199 (204)
T ss_pred             HHhccCCCCcEEecCCCCH-HHHHHHHhCC--CEEEEEChhh--cCchhhccccHHHHHHHHHH
Confidence            7765 35799999999987 8999999999  8999999999  75432    45566555444

2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida

>PLN02495 oxidoreductase, acting on the CH-CH group of donors

Probab=97.77  E-value=0.0011  Score=64.85  Aligned_cols=158  Identities=16%  Similarity=0.142  Sum_probs=98.5

Q ss_pred             hC-CCcEEEec--CCCHHH----HHHHHHcCCCEEEeCCeeecC------C---CCCHHHHHHHHHHhcCceEEEeeeee
Q 021156          131 AY-PGGLQVGG--GINSDN----SLSYIEEGATHVIVTSYVFNN------G---QMDLERLKDLVRVVGKQRLVLDLSCR  194 (316)
Q Consensus       131 ~~-~~pl~vGG--GIr~e~----~~~~l~~Gad~VVigt~~~~~------~---~~~~eli~ei~~~~G~~~IvvslD~k  194 (316)
                      +. ..|+++-=  +-..++    ++++-++|||.+-++-..-+.      |   ..+|+.+.++.+.. ++..-+.+-+|
T Consensus       110 ~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~V-k~~~~iPv~vK  188 (385)
T PLN02495        110 EYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWI-NAKATVPVWAK  188 (385)
T ss_pred             hCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHH-HHhhcCceEEE
Confidence            44 46877654  444333    455557899999886543221      0   12589998887776 33332333333


Q ss_pred             ecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEee-------cCCc--------------cccCCCCHH-----H
Q 021156          195 KKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHG-------VDVE--------------GKKLGIDDE-----L  248 (316)
Q Consensus       195 ~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtd-------i~~d--------------G~~~G~d~e-----l  248 (316)
                               ..-..  +  ++.+.++.+.+.|++.+++++       +|-+              |-+.|+-+.     .
T Consensus       189 ---------LsPn~--t--~i~~ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~  255 (385)
T PLN02495        189 ---------MTPNI--T--DITQPARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAK  255 (385)
T ss_pred             ---------eCCCh--h--hHHHHHHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHHHH
Confidence                     22111  1  477889999999999886432       2111              112333222     2


Q ss_pred             HHHHhhcC------CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156          249 VALLGKYS------PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVA  305 (316)
Q Consensus       249 i~~l~~~~------~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~  305 (316)
                      +.++++.+      ++|++..|||.+.+|+.+.+.+|  ++.|-|++|+ .+.|+-.++++.+
T Consensus       256 v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e~i~aG--As~VQv~Ta~-~~~Gp~vi~~i~~  315 (385)
T PLN02495        256 VMAIAKMMKSEFPEDRSLSGIGGVETGGDAAEFILLG--ADTVQVCTGV-MMHGYPLVKNLCA  315 (385)
T ss_pred             HHHHHHHHhhhccCCCcEEEECCCCCHHHHHHHHHhC--CCceeEeeee-eecCcHHHHHHHH
Confidence            33344433      48999999999999999999999  8999999998 2455766666544

>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional

Probab=97.75  E-value=0.0021  Score=58.60  Aligned_cols=185  Identities=15%  Similarity=0.157  Sum_probs=109.1

Q ss_pred             cCHH---HHHHHHHHcCCCcceEEEecCCc-cc---HHHHHHHHHh-C-CCcEEEecCCC-H-HHHHHHHHcCCCEEEeC
Q 021156           93 KSAA---EFANLYKEDGLTGGHAIMLGADP-LS---KAAAIEALHA-Y-PGGLQVGGGIN-S-DNSLSYIEEGATHVIVT  161 (316)
Q Consensus        93 ~~p~---e~a~~~~~~G~~~l~lvDLda~~-~~---~~~i~~~v~~-~-~~pl~vGGGIr-~-e~~~~~l~~Gad~VVig  161 (316)
                      .||.   +.++.+.+.|++++|+==.|+.. +|   -..+++.+++ . ++|+-+===+. . .-++.+.++|||.+.+-
T Consensus        16 ~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~~~G~~~v~~lr~~~~~~~lDvHLm~~~p~~~i~~~~~~Gad~itvH   95 (228)
T PTZ00170         16 ADFSKLADEAQDVLSGGADWLHVDVMDGHFVPNLSFGPPVVKSLRKHLPNTFLDCHLMVSNPEKWVDDFAKAGASQFTFH   95 (228)
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEEecccCccCCCcCcCHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHHcCCCEEEEe
Confidence            3555   44555666789999987778753 22   2334555553 3 56654444454 4 45889999999999886


Q ss_pred             CeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcC-CCEEEEeecC--Cc
Q 021156          162 SYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASY-ADEFLVHGVD--VE  238 (316)
Q Consensus       162 t~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~G-a~~ilvtdi~--~d  238 (316)
                      .+.-..   .+...-+..+.+| -+  +.+.+.  .              .. ..+.++.+.+.. ++.+++..++  .+
T Consensus        96 ~ea~~~---~~~~~l~~ik~~G-~~--~gval~--p--------------~t-~~e~l~~~l~~~~vD~Vl~m~v~pG~~  152 (228)
T PTZ00170         96 IEATED---DPKAVARKIREAG-MK--VGVAIK--P--------------KT-PVEVLFPLIDTDLVDMVLVMTVEPGFG  152 (228)
T ss_pred             ccCCch---HHHHHHHHHHHCC-Ce--EEEEEC--C--------------CC-CHHHHHHHHccchhhhHHhhhcccCCC
Confidence            554221   0223333334455 23  344432  0              11 234444444323 6766665555  33


Q ss_pred             cccCCC-CHHHHHHHhhcC-CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHH
Q 021156          239 GKKLGI-DDELVALLGKYS-PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAW  306 (316)
Q Consensus       239 G~~~G~-d~eli~~l~~~~-~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~  306 (316)
                      |....+ .++.++++++.. ...+.+.|||+. +.+..+.+.|  ++.+++||++  +... ++++..+.
T Consensus       153 gq~~~~~~~~ki~~~~~~~~~~~I~VdGGI~~-~ti~~~~~aG--ad~iVvGsaI--~~a~-d~~~~~~~  216 (228)
T PTZ00170        153 GQSFMHDMMPKVRELRKRYPHLNIQVDGGINL-ETIDIAADAG--ANVIVAGSSI--FKAK-DRKQAIEL  216 (228)
T ss_pred             CcEecHHHHHHHHHHHHhcccCeEEECCCCCH-HHHHHHHHcC--CCEEEEchHH--hCCC-CHHHHHHH
Confidence            333222 355666666543 467899999987 6899999998  8999999999  7543 45554443

>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]

Probab=97.73  E-value=0.0093  Score=53.82  Aligned_cols=183  Identities=17%  Similarity=0.171  Sum_probs=120.7

Q ss_pred             HHHHHHHHHHcCCCcceEEEecCCc-cc---HHHHHHHHHh-CCCcEEEecCCC-H-HHHHHHHHcCCCEEEeCCeeecC
Q 021156           95 AAEFANLYKEDGLTGGHAIMLGADP-LS---KAAAIEALHA-YPGGLQVGGGIN-S-DNSLSYIEEGATHVIVTSYVFNN  167 (316)
Q Consensus        95 p~e~a~~~~~~G~~~l~lvDLda~~-~~---~~~i~~~v~~-~~~pl~vGGGIr-~-e~~~~~l~~Gad~VVigt~~~~~  167 (316)
                      ..+..+.+.++|++++|+==+|+.. +|   -+.+.+.++. ...|+-|===+. . .-++.+.++||+++.+-.+.-.+
T Consensus        18 l~~el~~~~~agad~iH~DVMDghFVPNiTfGp~~v~~l~~~t~~p~DvHLMV~~p~~~i~~fa~agad~It~H~E~~~~   97 (220)
T COG0036          18 LGEELKALEAAGADLIHIDVMDGHFVPNITFGPPVVKALRKITDLPLDVHLMVENPDRYIEAFAKAGADIITFHAEATEH   97 (220)
T ss_pred             HHHHHHHHHHcCCCEEEEeccCCCcCCCcccCHHHHHHHhhcCCCceEEEEecCCHHHHHHHHHHhCCCEEEEEeccCcC
Confidence            4466777788899999998888863 22   2345566654 456666555554 4 44899999999999998885554


Q ss_pred             CCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHH
Q 021156          168 GQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDE  247 (316)
Q Consensus       168 ~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~e  247 (316)
                          +..+-+..+..|   +-+.+-.+  -+               .+++..+.+.+. ++.+++..+.-.-..+-+--+
T Consensus        98 ----~~r~i~~Ik~~G---~kaGv~ln--P~---------------Tp~~~i~~~l~~-vD~VllMsVnPGfgGQ~Fi~~  152 (220)
T COG0036          98 ----IHRTIQLIKELG---VKAGLVLN--PA---------------TPLEALEPVLDD-VDLVLLMSVNPGFGGQKFIPE  152 (220)
T ss_pred             ----HHHHHHHHHHcC---CeEEEEEC--CC---------------CCHHHHHHHHhh-CCEEEEEeECCCCcccccCHH
Confidence                444444445555   23334332  11               245566666554 899999998876555666544


Q ss_pred             HHHHH---hhcC----CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHH
Q 021156          248 LVALL---GKYS----PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHA  308 (316)
Q Consensus       248 li~~l---~~~~----~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~  308 (316)
                      .++++   ++..    ++-+.+=|||.. +.+..+.++|  ++-++.||++  |++.. .++.++..+
T Consensus       153 ~l~Ki~~lr~~~~~~~~~~IeVDGGI~~-~t~~~~~~AG--ad~~VaGSal--F~~~d-~~~~i~~~~  214 (220)
T COG0036         153 VLEKIRELRAMIDERLDILIEVDGGINL-ETIKQLAAAG--ADVFVAGSAL--FGADD-YKATIRELR  214 (220)
T ss_pred             HHHHHHHHHHHhcccCCeEEEEeCCcCH-HHHHHHHHcC--CCEEEEEEEE--eCCcc-HHHHHHHHH
Confidence            44444   4332    345788899865 7899999998  8889999999  88765 444444433

>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain

Probab=97.72  E-value=0.0004  Score=67.37  Aligned_cols=72  Identities=21%  Similarity=0.167  Sum_probs=59.7

Q ss_pred             HHHHHHHHHcCCCEEEEeecCCcccc-C--CCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          216 DERVLDFLASYADEFLVHGVDVEGKK-L--GIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       216 ~e~a~~~~~~Ga~~ilvtdi~~dG~~-~--G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      .+.++.+.+.|++.|++..--  |+. .  ...++.+.++++.+++|||+.|||++-.|+.+++.+|  ++.|++|+++
T Consensus       247 ~eda~~a~~~G~d~I~VSnhG--Grqld~~~~~~~~L~ei~~~~~~~vi~dGGIr~g~Dv~KALaLG--A~aV~iGr~~  321 (361)
T cd04736         247 AEDAKRCIELGADGVILSNHG--GRQLDDAIAPIEALAEIVAATYKPVLIDSGIRRGSDIVKALALG--ANAVLLGRAT  321 (361)
T ss_pred             HHHHHHHHHCCcCEEEECCCC--cCCCcCCccHHHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHHcC--CCEEEECHHH
Confidence            478899999999999874321  221 1  1357888888887889999999999999999999999  8999999998

MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional

Probab=97.71  E-value=0.0047  Score=55.63  Aligned_cols=170  Identities=15%  Similarity=0.075  Sum_probs=111.5

Q ss_pred             HHHHHHHHHcCCCcceEEEecCCcccH----HHHHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCC
Q 021156           96 AEFANLYKEDGLTGGHAIMLGADPLSK----AAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMD  171 (316)
Q Consensus        96 ~e~a~~~~~~G~~~l~lvDLda~~~~~----~~i~~~v~~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~  171 (316)
                      .+.++...+.|+..+++=+-+......    ..+.+.+++.+.++++-.     .++-+.+.|++.|=+|.....     
T Consensus        22 ~~~l~~~l~~G~~~vqLR~k~~~~~~~~~la~~l~~~~~~~~~~liInd-----~~~lA~~~~adGVHlg~~d~~-----   91 (211)
T PRK03512         22 VQWIERLLDAGVRTLQLRIKDRRDEEVEADVVAAIALGRRYQARLFIND-----YWRLAIKHQAYGVHLGQEDLE-----   91 (211)
T ss_pred             HHHHHHHHhCCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHhCCeEEEeC-----HHHHHHHcCCCEEEcChHhCC-----
Confidence            356666777889888887665542211    223344456778888875     566677789998877754322     


Q ss_pred             HHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeec----CCccccCCCCHH
Q 021156          172 LERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGV----DVEGKKLGIDDE  247 (316)
Q Consensus       172 ~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi----~~dG~~~G~d~e  247 (316)
                      +.   +..+..|.. .++++.+.                   +. +.+.++.+.|++.+.+-.+    +..+......++
T Consensus        92 ~~---~~r~~~~~~-~~iG~S~H-------------------~~-~e~~~A~~~gaDYi~lgpvf~T~tK~~~~~~~G~~  147 (211)
T PRK03512         92 TA---DLNAIRAAG-LRLGVSTH-------------------DD-MEIDVALAARPSYIALGHVFPTQTKQMPSAPQGLA  147 (211)
T ss_pred             HH---HHHHhcCCC-CEEEEeCC-------------------CH-HHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHH
Confidence            22   333334433 34666552                   12 3466777889999876444    333333445788


Q ss_pred             HHHHHhhc-CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156          248 LVALLGKY-SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVA  305 (316)
Q Consensus       248 li~~l~~~-~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~  305 (316)
                      .++++.+. .++||++-|||. .+++.++++.|  ++|+.+-+++  +... ++++..+
T Consensus       148 ~l~~~~~~~~~~PV~AiGGI~-~~ni~~l~~~G--a~GiAvisai--~~~~-d~~~~~~  200 (211)
T PRK03512        148 QLARHVERLADYPTVAIGGIS-LERAPAVLATG--VGSIAVVSAI--TQAA-DWRAATA  200 (211)
T ss_pred             HHHHHHHhcCCCCEEEECCCC-HHHHHHHHHcC--CCEEEEhhHh--hCCC-CHHHHHH
Confidence            88888765 589999999998 68999999998  9999999999  6433 4444433

>PRK10605 N-ethylmaleimide reductase; Provisional

Probab=97.70  E-value=0.00061  Score=66.26  Aligned_cols=148  Identities=15%  Similarity=0.012  Sum_probs=94.1

Q ss_pred             HHHHHHHcCCCEEEeCCee--------------ecC---C------CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEE
Q 021156          146 NSLSYIEEGATHVIVTSYV--------------FNN---G------QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAI  202 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~~--------------~~~---~------~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v  202 (316)
                      .++++.++|+|-|=|-.+-              ++|   |      ++..|.++.+.+.+|++.|.+-+...   +. .-
T Consensus       164 AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~---~~-~~  239 (362)
T PRK10605        164 AIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPL---GT-FN  239 (362)
T ss_pred             HHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCc---cc-cc
Confidence            3566678999999774221              111   1      34558888888888865332222210   10 00


Q ss_pred             EeCCcceecccC-HHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCC
Q 021156          203 VTDRWQKFSDVY-LDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIG  281 (316)
Q Consensus       203 ~~~gw~~~~~~~-~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g  281 (316)
                      ...++..  ..+ ..++++.+.+.|++.+=+..-+-.+ ..++..+..+++++.+++||+++|++ +++.++++++.| .
T Consensus       240 ~~~~G~~--~~e~~~~~~~~L~~~giD~i~vs~~~~~~-~~~~~~~~~~~ik~~~~~pv~~~G~~-~~~~ae~~i~~G-~  314 (362)
T PRK10605        240 NVDNGPN--EEADALYLIEQLGKRGIAYLHMSEPDWAG-GEPYSDAFREKVRARFHGVIIGAGAY-TAEKAETLIGKG-L  314 (362)
T ss_pred             cCCCCCC--HHHHHHHHHHHHHHcCCCEEEeccccccC-CccccHHHHHHHHHHCCCCEEEeCCC-CHHHHHHHHHcC-C
Confidence            0112211  112 4678899999999876444321111 12335566678888889999999996 899999999998 5


Q ss_pred             cCEEEEccchhhccCcccHHHHH
Q 021156          282 RVDVTVGSALDIFGGNLAYKDVV  304 (316)
Q Consensus       282 ~~gVivG~Al~~~~g~~~~~~~~  304 (316)
                      ++.|.+||++  ..+|-..+.++
T Consensus       315 ~D~V~~gR~~--iadPd~~~k~~  335 (362)
T PRK10605        315 IDAVAFGRDY--IANPDLVARLQ  335 (362)
T ss_pred             CCEEEECHHh--hhCccHHHHHh
Confidence            9999999999  98885555543

>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides

Probab=97.70  E-value=0.00094  Score=63.40  Aligned_cols=138  Identities=14%  Similarity=0.148  Sum_probs=102.4

Q ss_pred             HHHHHHHHcCCCEEE--eCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH
Q 021156          145 DNSLSYIEEGATHVI--VTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF  222 (316)
Q Consensus       145 e~~~~~l~~Gad~VV--igt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~  222 (316)
                      +.++++.+.|.+.+=  +|....++    .+.++.+.+.+|  .+.+.+|+.          .+|...   +..++++.+
T Consensus       140 ~~~~~~~~~Gf~~iKik~g~~~~~d----~~~v~~lr~~~g--~~~l~vD~n----------~~~~~~---~A~~~~~~l  200 (316)
T cd03319         140 AAAKKAAKRGFPLLKIKLGGDLEDD----IERIRAIREAAP--DARLRVDAN----------QGWTPE---EAVELLREL  200 (316)
T ss_pred             HHHHHHHHcCCCEEEEEeCCChhhH----HHHHHHHHHhCC--CCeEEEeCC----------CCcCHH---HHHHHHHHH
Confidence            346777888977543  34433333    788999999897  567889984          356532   467788888


Q ss_pred             HHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHH
Q 021156          223 LASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKD  302 (316)
Q Consensus       223 ~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~  302 (316)
                      .+.++..+       +.-+...|++.++++++.+++||.+++.+.+.++++++++.+ +++.+.+--+.  .+|--...+
T Consensus       201 ~~~~l~~i-------EeP~~~~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~-~~d~v~~~~~~--~GGi~~~~~  270 (316)
T cd03319         201 AELGVELI-------EQPVPAGDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGG-AYDGINIKLMK--TGGLTEALR  270 (316)
T ss_pred             HhcCCCEE-------ECCCCCCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcC-CCCEEEEeccc--cCCHHHHHH
Confidence            88887654       223344589999999999999999999999999999999987 57888887777  777666777


Q ss_pred             HHHHHHhhc
Q 021156          303 VVAWHAQQE  311 (316)
Q Consensus       303 ~~~~~~~~~  311 (316)
                      +.+++++..
T Consensus       271 ~~~~a~~~g  279 (316)
T cd03319         271 IADLARAAG  279 (316)
T ss_pred             HHHHHHHcC
Confidence            777766644

The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.

>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P)

Probab=97.70  E-value=4.1e-05  Score=69.64  Aligned_cols=75  Identities=19%  Similarity=0.242  Sum_probs=52.5

Q ss_pred             CCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156          226 YADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVA  305 (316)
Q Consensus       226 Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~  305 (316)
                      |.. ++|..- -.|+...+..+.++..++..++|+|++|||+|.++++++.+.|  +|-|++|.++  |++.. ++++++
T Consensus       153 g~~-~iYLEa-GSGa~~~v~~~v~~~~~~~~~~~LivGGGIrs~e~A~~~~~aG--AD~IVvGn~i--ee~~~-~e~~~~  225 (230)
T PF01884_consen  153 GMP-IIYLEA-GSGAYGPVPEEVIAAVKKLSDIPLIVGGGIRSPEQAREMAEAG--ADTIVVGNAI--EEDPD-LEEALE  225 (230)
T ss_dssp             T-S-EEEEE---TTSSS-HHHHHHHHHHHSSSSEEEEESS--SHHHHHHHHCTT--SSEEEESCHH--HHHH--HHHHHT
T ss_pred             CCC-EEEEEe-CCCCCCCccHHHHHHHHhcCCccEEEeCCcCCHHHHHHHHHCC--CCEEEECCEE--EEcch-HHHHHH
Confidence            444 445543 1577665555566555667899999999999999999999998  8999999999  87664 666655


Q ss_pred             HH
Q 021156          306 WH  307 (316)
Q Consensus       306 ~~  307 (316)
                      ..
T Consensus       226 ~i  227 (230)
T PF01884_consen  226 TI  227 (230)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.

>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4

Probab=97.68  E-value=0.00074  Score=62.69  Aligned_cols=133  Identities=20%  Similarity=0.221  Sum_probs=86.0

Q ss_pred             CCCcEEEecCCC------HHH-HHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEe
Q 021156          132 YPGGLQVGGGIN------SDN-SLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVT  204 (316)
Q Consensus       132 ~~~pl~vGGGIr------~e~-~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~  204 (316)
                      .++|+.+=+=.+      .|. ++++-++|++-+++=-...+.    .+.+.+..+.+|= ..+.-+.            
T Consensus        86 ~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee----~~~~~~~~~~~gl-~~I~lv~------------  148 (259)
T PF00290_consen   86 PDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEE----SEELREAAKKHGL-DLIPLVA------------  148 (259)
T ss_dssp             TSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGG----HHHHHHHHHHTT--EEEEEEE------------
T ss_pred             CCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHH----HHHHHHHHHHcCC-eEEEEEC------------
Confidence            568887766544      123 555667899999887766664    6677777788871 1212121            


Q ss_pred             CCcceecccCHHHHHHHHHHcCCCEEEEeec-CCccccCCCC---HHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCC
Q 021156          205 DRWQKFSDVYLDERVLDFLASYADEFLVHGV-DVEGKKLGID---DELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGI  280 (316)
Q Consensus       205 ~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi-~~dG~~~G~d---~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~  280 (316)
                             .....+.++...+..-+.+.+.+. ...|.....+   .+.++++++.++.|+.++=||++.+|++++. .+ 
T Consensus       149 -------p~t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~-~~-  219 (259)
T PF00290_consen  149 -------PTTPEERIKKIAKQASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHTDLPVAVGFGISTPEQAKKLA-AG-  219 (259)
T ss_dssp             -------TTS-HHHHHHHHHH-SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTTSS-EEEESSS-SHHHHHHHH-TT-
T ss_pred             -------CCCCHHHHHHHHHhCCcEEEeeccCCCCCCcccchHHHHHHHHHHHhhcCcceEEecCCCCHHHHHHHH-cc-
Confidence                   113456677777665555433333 2223333332   2478888888999999999999999999999 66 


Q ss_pred             CcCEEEEccch
Q 021156          281 GRVDVTVGSAL  291 (316)
Q Consensus       281 g~~gVivG~Al  291 (316)
                       +||||||||+
T Consensus       220 -aDGvIVGSa~  229 (259)
T PF00290_consen  220 -ADGVIVGSAF  229 (259)
T ss_dssp             -SSEEEESHHH
T ss_pred             -CCEEEECHHH
Confidence             8999999998

2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....

>PRK11572 copper homeostasis protein CutC; Provisional

Probab=97.66  E-value=0.007  Score=55.74  Aligned_cols=162  Identities=15%  Similarity=0.112  Sum_probs=107.8

Q ss_pred             CHHHHHHHHHHcCCCcceEEE-ec--CCcccHHHHHHHHHhCCCcEEE-----ecCCC-H--------HHHHHHHHcCCC
Q 021156           94 SAAEFANLYKEDGLTGGHAIM-LG--ADPLSKAAAIEALHAYPGGLQV-----GGGIN-S--------DNSLSYIEEGAT  156 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvD-Ld--a~~~~~~~i~~~v~~~~~pl~v-----GGGIr-~--------e~~~~~l~~Gad  156 (316)
                      ++. -|..-.+.|++++.|.+ |.  +..+....+..+.+.+.+|+.+     ||+.- +        +|++.+.+.|++
T Consensus        10 s~~-~a~~A~~~GAdRiELc~~L~~GGlTPS~g~i~~~~~~~~ipv~vMIRPR~gdF~Ys~~E~~~M~~di~~~~~~Gad   88 (248)
T PRK11572         10 SME-CALTAQQAGADRIELCAAPKEGGLTPSLGVLKSVRERVTIPVHPIIRPRGGDFCYSDGEFAAMLEDIATVRELGFP   88 (248)
T ss_pred             CHH-HHHHHHHcCCCEEEEccCcCCCCcCCCHHHHHHHHHhcCCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHcCCC
Confidence            454 44445577999998874 33  3346666676666667888775     67763 2        357777889999


Q ss_pred             EEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecC
Q 021156          157 HVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVD  236 (316)
Q Consensus       157 ~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~  236 (316)
                      -+|+|.... ++++|.+.++++.+..++-.+              .+.+.+...  .++.+..+.+.++|+++|+ |+  
T Consensus        89 GvV~G~L~~-dg~vD~~~~~~Li~~a~~~~v--------------TFHRAfD~~--~d~~~al~~l~~lG~~rIL-TS--  148 (248)
T PRK11572         89 GLVTGVLDV-DGHVDMPRMRKIMAAAGPLAV--------------TFHRAFDMC--ANPLNALKQLADLGVARIL-TS--  148 (248)
T ss_pred             EEEEeeECC-CCCcCHHHHHHHHHHhcCCce--------------EEechhhcc--CCHHHHHHHHHHcCCCEEE-CC--
Confidence            999998764 478999999999987753222              122222221  2577888899999999987 33  


Q ss_pred             CccccCCC--CHHHHHHHhhcC-CCcEEEEeCCCCHHHHHHHHHhC
Q 021156          237 VEGKKLGI--DDELVALLGKYS-PIPVTYAGGVTTMADLEKIKVAG  279 (316)
Q Consensus       237 ~dG~~~G~--d~eli~~l~~~~-~iPVIasGGI~s~eDi~~l~~~G  279 (316)
                        |.....  ..+.++++.+.. +.-|+++|||+. +.+.++.+.|
T Consensus       149 --Gg~~~a~~g~~~L~~lv~~a~~~~Im~GgGV~~-~Nv~~l~~tG  191 (248)
T PRK11572        149 --GQQQDAEQGLSLIMELIAASDGPIIMAGAGVRL-SNLHKFLDAG  191 (248)
T ss_pred             --CCCCCHHHHHHHHHHHHHhcCCCEEEeCCCCCH-HHHHHHHHcC
Confidence              222222  466777776543 333777777765 6788887666

>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase

Probab=97.66  E-value=0.004  Score=63.07  Aligned_cols=160  Identities=18%  Similarity=0.134  Sum_probs=106.2

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCcc----cHHHHHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCC
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADPL----SKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQ  169 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~~----~~~~i~~~v~~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~  169 (316)
                      +..+.++...+.|+..+++=+=+....    --..+.+.+++.++++++-.     +.+-+.+.|++.|=+|-....   
T Consensus       308 ~~~~~l~~~l~~Gv~~vqlR~k~~~~~~~~~~a~~l~~~~~~~~~~liind-----~~~lA~~~~adGvHl~~~d~~---  379 (502)
T PLN02898        308 STVDAVRAAIEGGATIVQLREKEAETREFIEEAKACLAICRSYGVPLLIND-----RVDVALACDADGVHLGQSDMP---  379 (502)
T ss_pred             hHHHHHHHHHHcCCCEEEEccCCCCHHHHHHHHHHHHHHHHHhCCEEEEcC-----hHHHHHhcCCCEEEeChHhcC---
Confidence            455677777778887777654333211    11122333444566777654     567777889998877754322   


Q ss_pred             CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEE----eecCCccccCCCC
Q 021156          170 MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLV----HGVDVEGKKLGID  245 (316)
Q Consensus       170 ~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilv----tdi~~dG~~~G~d  245 (316)
                           ..+..+.+|++. ++++.+.                   +. +.+.+..+.|++.+.+    ...+..+ ....+
T Consensus       380 -----~~~~r~~~~~~~-~iG~S~h-------------------~~-~e~~~a~~~gadyi~~gpif~t~tk~~-~~~~g  432 (502)
T PLN02898        380 -----VRLARSLLGPGK-IIGVSCK-------------------TP-EQAEQAWKDGADYIGCGGVFPTNTKAN-NKTIG  432 (502)
T ss_pred             -----HHHHHHhcCCCC-EEEEeCC-------------------CH-HHHHHHhhcCCCEEEECCeecCCCCCC-CCCCC
Confidence                 234444455444 4666653                   23 4467777889999864    2223332 23448


Q ss_pred             HHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcC---EEEEccch
Q 021156          246 DELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRV---DVTVGSAL  291 (316)
Q Consensus       246 ~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~---gVivG~Al  291 (316)
                      ++.++++.+..++||++-|||. .+++.++++.|  ++   +|.+++++
T Consensus       433 ~~~~~~~~~~~~~Pv~aiGGI~-~~~~~~~~~~G--~~~~~gvav~~~i  478 (502)
T PLN02898        433 LDGLREVCEASKLPVVAIGGIS-ASNAASVMESG--APNLKGVAVVSAL  478 (502)
T ss_pred             HHHHHHHHHcCCCCEEEECCCC-HHHHHHHHHcC--CCcCceEEEEeHH
Confidence            9999999888899999999996 89999999998  56   99999999

>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5

Probab=97.65  E-value=0.0006  Score=61.01  Aligned_cols=172  Identities=17%  Similarity=0.157  Sum_probs=109.2

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCc-c---cHHHHHHHHH-hCCCcEEEecCCC-H-HHHHHHHHcCCCEEEeCCeeec
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADP-L---SKAAAIEALH-AYPGGLQVGGGIN-S-DNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~-~---~~~~i~~~v~-~~~~pl~vGGGIr-~-e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      +..+.++.+.++|++++|+==+|+.. +   -.+.+++.++ ..+.|+-|===+. . .-++.+.++|++.|.+-.+...
T Consensus        13 ~l~~~i~~l~~~g~d~lHiDiMDg~fvpn~~~g~~~i~~i~~~~~~~~DvHLMv~~P~~~i~~~~~~g~~~i~~H~E~~~   92 (201)
T PF00834_consen   13 NLEEEIKRLEEAGADWLHIDIMDGHFVPNLTFGPDIIKAIRKITDLPLDVHLMVENPERYIEEFAEAGADYITFHAEATE   92 (201)
T ss_dssp             GHHHHHHHHHHTT-SEEEEEEEBSSSSSSB-B-HHHHHHHHTTSSSEEEEEEESSSGGGHHHHHHHHT-SEEEEEGGGTT
T ss_pred             HHHHHHHHHHHcCCCEEEEeecccccCCcccCCHHHHHHHhhcCCCcEEEEeeeccHHHHHHHHHhcCCCEEEEcccchh
Confidence            45577788888999999998888763 1   2344555555 4556666555454 5 4499999999999988887666


Q ss_pred             CCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCH
Q 021156          167 NGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDD  246 (316)
Q Consensus       167 ~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~  246 (316)
                      +    +..+-+..++.| -+.-+++...                +   +.+..+.+.+ -++.+++..++-....+.+..
T Consensus        93 ~----~~~~i~~ik~~g-~k~GialnP~----------------T---~~~~~~~~l~-~vD~VlvMsV~PG~~Gq~f~~  147 (201)
T PF00834_consen   93 D----PKETIKYIKEAG-IKAGIALNPE----------------T---PVEELEPYLD-QVDMVLVMSVEPGFGGQKFIP  147 (201)
T ss_dssp             T----HHHHHHHHHHTT-SEEEEEE-TT----------------S----GGGGTTTGC-CSSEEEEESS-TTTSSB--HG
T ss_pred             C----HHHHHHHHHHhC-CCEEEEEECC----------------C---CchHHHHHhh-hcCEEEEEEecCCCCcccccH
Confidence            5    554445555565 3444444321                1   2233334444 489999999887544555544


Q ss_pred             HHHHH---Hhhc-----CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhcc
Q 021156          247 ELVAL---LGKY-----SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFG  295 (316)
Q Consensus       247 eli~~---l~~~-----~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~  295 (316)
                      +.+++   +++.     .++.+.+=|||+. +.+..+.++|  ++.+++||++  |.
T Consensus       148 ~~~~KI~~l~~~~~~~~~~~~I~vDGGI~~-~~~~~~~~aG--ad~~V~Gs~i--F~  199 (201)
T PF00834_consen  148 EVLEKIRELRKLIPENGLDFEIEVDGGINE-ENIKQLVEAG--ADIFVAGSAI--FK  199 (201)
T ss_dssp             GHHHHHHHHHHHHHHHTCGSEEEEESSEST-TTHHHHHHHT----EEEESHHH--HT
T ss_pred             HHHHHHHHHHHHHHhcCCceEEEEECCCCH-HHHHHHHHcC--CCEEEECHHH--hC
Confidence            44444   3332     3478999999987 5899999999  8999999999  64

1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....

>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS)

Probab=97.65  E-value=0.0027  Score=60.58  Aligned_cols=161  Identities=20%  Similarity=0.167  Sum_probs=101.9

Q ss_pred             HHHHHHHHcCCCcceEEEecCCc-ccHHHHHHHHHh--CCCcEEEecCC---C---HHHHHHHHHcCCCEEEeCCeeecC
Q 021156           97 EFANLYKEDGLTGGHAIMLGADP-LSKAAAIEALHA--YPGGLQVGGGI---N---SDNSLSYIEEGATHVIVTSYVFNN  167 (316)
Q Consensus        97 e~a~~~~~~G~~~l~lvDLda~~-~~~~~i~~~v~~--~~~pl~vGGGI---r---~e~~~~~l~~Gad~VVigt~~~~~  167 (316)
                      ++|..-.++|..+  ++.+.... ......++.+++  .+-|+-|+==.   .   .+.++-+++.+...|+++-   .+
T Consensus        18 ~LaaAVS~AGgLG--~la~~~~~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l~vi~e~~v~~V~~~~---G~   92 (320)
T cd04743          18 EFAVAVAEGGGLP--FIALALMRGEQVKALLEETAELLGDKPWGVGILGFVDTELRAAQLAVVRAIKPTFALIAG---GR   92 (320)
T ss_pred             HHHHHHHhCCccc--cCCCCCCCHHHHHHHHHHHHHhccCCCeEEEEeccCCCcchHHHHHHHHhcCCcEEEEcC---CC
Confidence            4888888888443  33332211 112223333443  34565444311   1   3568888899998887652   33


Q ss_pred             CCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCC--C
Q 021156          168 GQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGI--D  245 (316)
Q Consensus       168 ~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~--d  245 (316)
                          |..++++. ..|   |.+-..+                    .-.+.++.+++.|+|.+++...+.-|+. |.  -
T Consensus        93 ----P~~~~~lk-~~G---i~v~~~v--------------------~s~~~A~~a~~~GaD~vVaqG~EAGGH~-G~~~t  143 (320)
T cd04743          93 ----PDQARALE-AIG---ISTYLHV--------------------PSPGLLKQFLENGARKFIFEGRECGGHV-GPRSS  143 (320)
T ss_pred             ----hHHHHHHH-HCC---CEEEEEe--------------------CCHHHHHHHHHcCCCEEEEecCcCcCCC-CCCCc
Confidence                65554443 344   2222222                    1236789999999999999999887764 53  3


Q ss_pred             HHHHHHHhhc----------CCCcEEEEeCCCCHHHHHHHHHhCC-----Cc-CEEEEccch
Q 021156          246 DELVALLGKY----------SPIPVTYAGGVTTMADLEKIKVAGI-----GR-VDVTVGSAL  291 (316)
Q Consensus       246 ~eli~~l~~~----------~~iPVIasGGI~s~eDi~~l~~~G~-----g~-~gVivG~Al  291 (316)
                      +.++.++.+.          +++|||++|||.+-..+..++.+|+     |+ +||.+|+++
T Consensus       144 ~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dgr~~aaalaLGA~~~~~Ga~~GV~mGTrF  205 (320)
T cd04743         144 FVLWESAIDALLAANGPDKAGKIHLLFAGGIHDERSAAMVSALAAPLAERGAKVGVLMGTAY  205 (320)
T ss_pred             hhhHHHHHHHHHHhhcccccCCccEEEEcCCCCHHHHHHHHHcCCcccccccccEEEEccHH
Confidence            4455554432          2799999999999999999999983     12 799999998

NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]

Probab=97.64  E-value=0.00083  Score=62.27  Aligned_cols=133  Identities=20%  Similarity=0.223  Sum_probs=87.6

Q ss_pred             CCCcEEEecCCC------HHH-HHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEe
Q 021156          132 YPGGLQVGGGIN------SDN-SLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVT  204 (316)
Q Consensus       132 ~~~pl~vGGGIr------~e~-~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~  204 (316)
                      ..+|+.+=+=.+      .+. ++++.++|+|-+++--...+-    .+.+.+..+++|=+.|.+            +  
T Consensus        93 ~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee----~~~~~~~~~~~gi~~I~l------------v--  154 (265)
T COG0159          93 VKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEE----SDELLKAAEKHGIDPIFL------------V--  154 (265)
T ss_pred             CCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHH----HHHHHHHHHHcCCcEEEE------------e--
Confidence            456776555443      244 667788999998886655543    455666667776222211            1  


Q ss_pred             CCcceecccCHHHHHHHHHHcCCCEEEEeec-CCccccCCC--C-HHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCC
Q 021156          205 DRWQKFSDVYLDERVLDFLASYADEFLVHGV-DVEGKKLGI--D-DELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGI  280 (316)
Q Consensus       205 ~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi-~~dG~~~G~--d-~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~  280 (316)
                            +.....+..++..+..-+.+.+-++ -..|.....  + .++++++++.+++|+.++-||++.++++++.+.  
T Consensus       155 ------aPtt~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~--  226 (265)
T COG0159         155 ------APTTPDERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYTDVPVLVGFGISSPEQAAQVAEA--  226 (265)
T ss_pred             ------CCCCCHHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhcCCCeEEecCcCCHHHHHHHHHh--
Confidence                  0112345666666655555544444 222333331  2 458889999899999999999999999999998  


Q ss_pred             CcCEEEEccch
Q 021156          281 GRVDVTVGSAL  291 (316)
Q Consensus       281 g~~gVivG~Al  291 (316)
                       ++|||||||+
T Consensus       227 -ADGVIVGSAi  236 (265)
T COG0159         227 -ADGVIVGSAI  236 (265)
T ss_pred             -CCeEEEcHHH
Confidence             5999999998

>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism

Probab=97.59  E-value=0.00041  Score=63.43  Aligned_cols=77  Identities=14%  Similarity=0.209  Sum_probs=53.6

Q ss_pred             ecCCccCHHHHHHHHHHcCCCcceE--EEecCC-cccHHHHHHHHH-hCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCC
Q 021156           88 NFESDKSAAEFANLYKEDGLTGGHA--IMLGAD-PLSKAAAIEALH-AYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTS  162 (316)
Q Consensus        88 ~~~~~~~p~e~a~~~~~~G~~~l~l--vDLda~-~~~~~~i~~~v~-~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt  162 (316)
                      +|+ .+||. .|+.+++.|++-+--  --+... ...++..++.++ ..++|++++|||. .+|+.++++.||+-|++||
T Consensus       128 pyc-~dd~~-~ar~l~~~G~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~~~vpVI~egGI~tpeda~~AmelGAdgVlV~S  205 (248)
T cd04728         128 PYC-TDDPV-LAKRLEDAGCAAVMPLGSPIGSGQGLLNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLLNT  205 (248)
T ss_pred             EEe-CCCHH-HHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence            355 35776 778888877664411  001111 122455555555 4689999999998 5999999999999999999


Q ss_pred             eeec
Q 021156          163 YVFN  166 (316)
Q Consensus       163 ~~~~  166 (316)
                      +..+
T Consensus       206 AIt~  209 (248)
T cd04728         206 AIAK  209 (248)
T ss_pred             HhcC
Confidence            9876

ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=97.57  E-value=0.00065  Score=65.91  Aligned_cols=134  Identities=23%  Similarity=0.275  Sum_probs=94.8

Q ss_pred             CcEEEecCCC--H---HHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcc
Q 021156          134 GGLQVGGGIN--S---DNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQ  208 (316)
Q Consensus       134 ~pl~vGGGIr--~---e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~  208 (316)
                      -.+.+|.+|-  .   +.+..+.++|+|.||+++.-=+. .+-.++++-+.+.|+ +     +++-  .|  -|.     
T Consensus       238 kqll~gAaiGTre~dK~rl~ll~~aGvdvviLDSSqGnS-~~qiemik~iK~~yP-~-----l~Vi--aG--NVV-----  301 (503)
T KOG2550|consen  238 KQLLCGAAIGTRDDDKERLDLLVQAGVDVVILDSSQGNS-IYQLEMIKYIKETYP-D-----LQII--AG--NVV-----  301 (503)
T ss_pred             cceeeeeccccccchhHHHHHhhhcCCcEEEEecCCCcc-hhHHHHHHHHHhhCC-C-----ceee--cc--cee-----
Confidence            4678899993  2   33667778999999997753221 222688888888884 3     3332  23  121     


Q ss_pred             eecccCHHHHHHHHHHcCCCEE---------EE-eecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHh
Q 021156          209 KFSDVYLDERVLDFLASYADEF---------LV-HGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVA  278 (316)
Q Consensus       209 ~~~~~~~~e~a~~~~~~Ga~~i---------lv-tdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~  278 (316)
                            .-+.++.+...|++.+         .+ ..+-.-|.-+|--.--+.+++...++|+|+-|||.+..|+.+.+.+
T Consensus       302 ------T~~qa~nLI~aGaDgLrVGMGsGSiCiTqevma~GrpQ~TAVy~va~~A~q~gvpviADGGiq~~Ghi~KAl~l  375 (503)
T KOG2550|consen  302 ------TKEQAANLIAAGADGLRVGMGSGSICITQKVMACGRPQGTAVYKVAEFANQFGVPCIADGGIQNVGHVVKALGL  375 (503)
T ss_pred             ------eHHHHHHHHHccCceeEeccccCceeeeceeeeccCCcccchhhHHHHHHhcCCceeecCCcCccchhHhhhhc
Confidence                  2367889999999864         22 2344556656654444556667789999999999999999999999


Q ss_pred             CCCcCEEEEccch
Q 021156          279 GIGRVDVTVGSAL  291 (316)
Q Consensus       279 G~g~~gVivG~Al  291 (316)
                      |  ++.||.|.-+
T Consensus       376 G--AstVMmG~lL  386 (503)
T KOG2550|consen  376 G--ASTVMMGGLL  386 (503)
T ss_pred             C--chhheeccee
Confidence            8  8899999765

>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain

Probab=97.55  E-value=0.00041  Score=65.24  Aligned_cols=85  Identities=22%  Similarity=0.303  Sum_probs=64.7

Q ss_pred             CHHHHHHHHHHcCCCcceEE--------EecCC-------------cc----cHHHHHHHHHhCCCcEEEecCCC-HHHH
Q 021156           94 SAAEFANLYKEDGLTGGHAI--------MLGAD-------------PL----SKAAAIEALHAYPGGLQVGGGIN-SDNS  147 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lv--------DLda~-------------~~----~~~~i~~~v~~~~~pl~vGGGIr-~e~~  147 (316)
                      +..++|+.+.++|++.+.++        |+...             ..    ....+.++.+.+++||+..|||+ .+|+
T Consensus       167 ~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~da  246 (296)
T cd04740         167 DIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGEDA  246 (296)
T ss_pred             hHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHHHH
Confidence            57788999999999998876        33210             00    11223333345789999999998 5999


Q ss_pred             HHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHh
Q 021156          148 LSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVV  182 (316)
Q Consensus       148 ~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~  182 (316)
                      .+++.+|||.|-+++.++.+    |.++.++.+..
T Consensus       247 ~~~l~~GAd~V~igra~l~~----p~~~~~i~~~l  277 (296)
T cd04740         247 LEFLMAGASAVQVGTANFVD----PEAFKEIIEGL  277 (296)
T ss_pred             HHHHHcCCCEEEEchhhhcC----hHHHHHHHHHH
Confidence            99999999999999999997    88888887665

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>PRK08999 hypothetical protein; Provisional

Probab=97.54  E-value=0.0046  Score=58.49  Aligned_cols=157  Identities=19%  Similarity=0.084  Sum_probs=97.9

Q ss_pred             HHHHHHHHcCCCcceEEEecCCcc----cHHHHHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCH
Q 021156           97 EFANLYKEDGLTGGHAIMLGADPL----SKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDL  172 (316)
Q Consensus        97 e~a~~~~~~G~~~l~lvDLda~~~----~~~~i~~~v~~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~  172 (316)
                      +.++.....|+..+++=+=+....    --..+.+.+++.++++++-.     +.+-+++.|++.|=+|.....     +
T Consensus       148 ~~~~~~l~~g~~~vqlR~k~~~~~~~~~~~~~l~~~~~~~~~~liind-----~~~la~~~~~~GvHl~~~d~~-----~  217 (312)
T PRK08999        148 ARLERALAAGIRLIQLRAPQLPPAAYRALARAALGLCRRAGAQLLLNG-----DPELAEDLGADGVHLTSAQLA-----A  217 (312)
T ss_pred             HHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCEEEEEC-----cHHHHHhcCCCEEEcChhhcC-----h
Confidence            344444455666666655443221    11223333445567777765     456667788888877754322     1


Q ss_pred             HHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCcccc---CCCCHHHH
Q 021156          173 ERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKK---LGIDDELV  249 (316)
Q Consensus       173 eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~---~G~d~eli  249 (316)
                         .+..+ ++++. ++++.+.                   +. +.++++.+.|++.+.+-.+-...+.   ....++.+
T Consensus       218 ---~~~r~-~~~~~-~ig~S~h-------------------~~-~~~~~a~~~~~dyi~~gpvf~t~tk~~~~~~g~~~~  272 (312)
T PRK08999        218 ---LAARP-LPAGR-WVAASCH-------------------DA-EELARAQRLGVDFAVLSPVQPTASHPGAAPLGWEGF  272 (312)
T ss_pred             ---Hhhcc-CCCCC-EEEEecC-------------------CH-HHHHHHHhcCCCEEEECCCcCCCCCCCCCCCCHHHH
Confidence               11222 44333 4555552                   12 3466777889999876444222222   33478889


Q ss_pred             HHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          250 ALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       250 ~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      +++++..++||++-||| +.+++.++++.|  +++|.+-+++
T Consensus       273 ~~~~~~~~~Pv~AiGGI-~~~~~~~~~~~g--~~gva~i~~~  311 (312)
T PRK08999        273 AALIAGVPLPVYALGGL-GPGDLEEAREHG--AQGIAGIRGL  311 (312)
T ss_pred             HHHHHhCCCCEEEECCC-CHHHHHHHHHhC--CCEEEEEEEe
Confidence            99998889999999999 899999999998  8888887765

>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain

Probab=97.54  E-value=0.0002  Score=64.50  Aligned_cols=84  Identities=15%  Similarity=0.173  Sum_probs=66.0

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCC-----cccHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHc-CCCEEEeCCeeec
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGAD-----PLSKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEE-GATHVIVTSYVFN  166 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~-----~~~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~-Gad~VVigt~~~~  166 (316)
                      +..++++.+.+.|++.+++..-...     +.+.+.+.++.+..++|+++.|||+ .++++++++. |||.|.+|+.++.
T Consensus       139 ~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~  218 (231)
T cd02801         139 ETLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALG  218 (231)
T ss_pred             HHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhHh
Confidence            5778999999999988877654321     1244444444446789999999998 5999999998 8999999999999


Q ss_pred             CCCCCHHHHHHHHHH
Q 021156          167 NGQMDLERLKDLVRV  181 (316)
Q Consensus       167 ~~~~~~eli~ei~~~  181 (316)
                      |    |+++.++.+.
T Consensus       219 ~----P~~~~~~~~~  229 (231)
T cd02801         219 N----PWLFREIKEL  229 (231)
T ss_pred             C----CHHHHhhhhc
Confidence            8    9999887653

Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.

>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain

Probab=97.54  E-value=0.00047  Score=66.07  Aligned_cols=72  Identities=17%  Similarity=0.182  Sum_probs=56.5

Q ss_pred             HHHHHHHHHcCCCEEEEeecCCcccc-------CCC-----------C-----HHHHHHHhhcC-CCcEEEEeCCCCHHH
Q 021156          216 DERVLDFLASYADEFLVHGVDVEGKK-------LGI-----------D-----DELVALLGKYS-PIPVTYAGGVTTMAD  271 (316)
Q Consensus       216 ~e~a~~~~~~Ga~~ilvtdi~~dG~~-------~G~-----------d-----~eli~~l~~~~-~iPVIasGGI~s~eD  271 (316)
                      .+.++.+.+.|++.|.+...  -|+.       .+.           |     .+.+.++++.+ ++|||++|||++..|
T Consensus       192 ~~~a~~l~~~Gvd~I~vsG~--GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipIiasGGIr~~~d  269 (326)
T cd02811         192 RETAKRLADAGVKAIDVAGA--GGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALPDLPLIASGGIRNGLD  269 (326)
T ss_pred             HHHHHHHHHcCCCEEEECCC--CCCcccccccccccccccccccccccccccHHHHHHHHHHHcCCCcEEEECCCCCHHH
Confidence            48899999999999987653  2210       110           2     24566666656 899999999999999


Q ss_pred             HHHHHHhCCCcCEEEEccch
Q 021156          272 LEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       272 i~~l~~~G~g~~gVivG~Al  291 (316)
                      +.+++.+|  +++|.+|+++
T Consensus       270 v~kal~lG--Ad~V~i~~~~  287 (326)
T cd02811         270 IAKALALG--ADLVGMAGPF  287 (326)
T ss_pred             HHHHHHhC--CCEEEEcHHH
Confidence            99999998  9999999987

Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.

>PRK00208 thiG thiazole synthase; Reviewed

Probab=97.52  E-value=0.00056  Score=62.63  Aligned_cols=74  Identities=18%  Similarity=0.242  Sum_probs=52.8

Q ss_pred             cCCccCHHHHHHHHHHcCCCcceEEEec---CC--cccHHHHHHHHH-hCCCcEEEecCCC-HHHHHHHHHcCCCEEEeC
Q 021156           89 FESDKSAAEFANLYKEDGLTGGHAIMLG---AD--PLSKAAAIEALH-AYPGGLQVGGGIN-SDNSLSYIEEGATHVIVT  161 (316)
Q Consensus        89 ~~~~~~p~e~a~~~~~~G~~~l~lvDLd---a~--~~~~~~i~~~v~-~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVig  161 (316)
                      |+ .+||. .|+.+++.|++-+  --|.   +.  ...++..++.++ ..++|++++|||. .+|+.+.++.|||-|++|
T Consensus       129 yc-~~d~~-~ak~l~~~G~~~v--mPlg~pIGsg~gi~~~~~i~~i~e~~~vpVIveaGI~tpeda~~AmelGAdgVlV~  204 (250)
T PRK00208        129 YC-TDDPV-LAKRLEEAGCAAV--MPLGAPIGSGLGLLNPYNLRIIIEQADVPVIVDAGIGTPSDAAQAMELGADAVLLN  204 (250)
T ss_pred             Ee-CCCHH-HHHHHHHcCCCEe--CCCCcCCCCCCCCCCHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence            55 35676 7777777776644  1111   11  122355556655 4689999999998 599999999999999999


Q ss_pred             Ceeec
Q 021156          162 SYVFN  166 (316)
Q Consensus       162 t~~~~  166 (316)
                      |+..+
T Consensus       205 SAItk  209 (250)
T PRK00208        205 TAIAV  209 (250)
T ss_pred             hHhhC
Confidence            99876

>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional

Probab=97.50  E-value=0.001  Score=63.23  Aligned_cols=81  Identities=20%  Similarity=0.132  Sum_probs=66.3

Q ss_pred             HHHHHHHHHcCCCEEEEee-cCCccccCCC-CHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhh
Q 021156          216 DERVLDFLASYADEFLVHG-VDVEGKKLGI-DDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDI  293 (316)
Q Consensus       216 ~e~a~~~~~~Ga~~ilvtd-i~~dG~~~G~-d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~  293 (316)
                      ...++++.+.|+  +.+.. -+.-|+..|. |.+.++.+.+..++||+..+||++.+|+..+.++|  ++||.+.+|+..
T Consensus       208 ~~~a~~l~~~g~--~avmPl~~pIGsg~gv~~p~~i~~~~e~~~vpVivdAGIg~~sda~~AmelG--adgVL~nSaIa~  283 (326)
T PRK11840        208 PIAAKRLEDAGA--VAVMPLGAPIGSGLGIQNPYTIRLIVEGATVPVLVDAGVGTASDAAVAMELG--CDGVLMNTAIAE  283 (326)
T ss_pred             HHHHHHHHhcCC--EEEeeccccccCCCCCCCHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHcC--CCEEEEcceecc
Confidence            467888999888  34455 4566888888 99999999988899999999999999999999999  999999999933


Q ss_pred             ccCcccH
Q 021156          294 FGGNLAY  300 (316)
Q Consensus       294 ~~g~~~~  300 (316)
                      -.+|...
T Consensus       284 a~dPv~M  290 (326)
T PRK11840        284 AKNPVLM  290 (326)
T ss_pred             CCCHHHH
Confidence            3333333

>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]

Probab=97.47  E-value=0.0028  Score=57.41  Aligned_cols=83  Identities=14%  Similarity=0.131  Sum_probs=63.1

Q ss_pred             HHHHHHHcCCCEEEEeecCCccccCCC-CHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccC
Q 021156          218 RVLDFLASYADEFLVHGVDVEGKKLGI-DDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGG  296 (316)
Q Consensus       218 ~a~~~~~~Ga~~ilvtdi~~dG~~~G~-d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g  296 (316)
                      .++++++.||..+.=. -.--|+..|+ |...++.+.+..++|||+--||+++.|.....++|  +++|++.+|+-.-.+
T Consensus       143 ~arrLee~GcaavMPl-~aPIGSg~G~~n~~~l~iiie~a~VPviVDAGiG~pSdAa~aMElG--~DaVL~NTAiA~A~D  219 (262)
T COG2022         143 LARRLEEAGCAAVMPL-GAPIGSGLGLQNPYNLEIIIEEADVPVIVDAGIGTPSDAAQAMELG--ADAVLLNTAIARAKD  219 (262)
T ss_pred             HHHHHHhcCceEeccc-cccccCCcCcCCHHHHHHHHHhCCCCEEEeCCCCChhHHHHHHhcc--cceeehhhHhhccCC
Confidence            5566666666544211 1334888898 88899999888899999999999999999999999  999999999944444


Q ss_pred             cccHHHH
Q 021156          297 NLAYKDV  303 (316)
Q Consensus       297 ~~~~~~~  303 (316)
                      +....++
T Consensus       220 Pv~MA~A  226 (262)
T COG2022         220 PVAMARA  226 (262)
T ss_pred             hHHHHHH
Confidence            4444333

>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed

Probab=97.47  E-value=0.00048  Score=65.02  Aligned_cols=86  Identities=19%  Similarity=0.232  Sum_probs=65.2

Q ss_pred             cCHHHHHHHHHHcCCCcceEEE--------ecCC----------------cc-cHHHHHHHHHhCCCcEEEecCCC-HHH
Q 021156           93 KSAAEFANLYKEDGLTGGHAIM--------LGAD----------------PL-SKAAAIEALHAYPGGLQVGGGIN-SDN  146 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvD--------Lda~----------------~~-~~~~i~~~v~~~~~pl~vGGGIr-~e~  146 (316)
                      .+..++|+.+.++|++.++++.        ++..                .+ ....+.++.+.+++|++.-|||+ .++
T Consensus       169 ~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~d  248 (301)
T PRK07259        169 TDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAED  248 (301)
T ss_pred             hhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHHH
Confidence            3677899999999999998753        2110                00 12233333345789999999998 599


Q ss_pred             HHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHh
Q 021156          147 SLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVV  182 (316)
Q Consensus       147 ~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~  182 (316)
                      +.+++.+|||.|.+++.++.+    |+++.++.+..
T Consensus       249 a~~~l~aGAd~V~igr~ll~~----P~~~~~i~~~l  280 (301)
T PRK07259        249 AIEFIMAGASAVQVGTANFYD----PYAFPKIIEGL  280 (301)
T ss_pred             HHHHHHcCCCceeEcHHHhcC----cHHHHHHHHHH
Confidence            999999999999999999987    88888887654

>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2

Probab=97.46  E-value=0.00048  Score=66.23  Aligned_cols=72  Identities=18%  Similarity=0.137  Sum_probs=56.7

Q ss_pred             HHHHHHHHHcCCCEEEEeecCCcccc----------C----C--CCH-----HHHHHHhh-cCCCcEEEEeCCCCHHHHH
Q 021156          216 DERVLDFLASYADEFLVHGVDVEGKK----------L----G--IDD-----ELVALLGK-YSPIPVTYAGGVTTMADLE  273 (316)
Q Consensus       216 ~e~a~~~~~~Ga~~ilvtdi~~dG~~----------~----G--~d~-----eli~~l~~-~~~iPVIasGGI~s~eDi~  273 (316)
                      .+.++.+.+.|++.|.++..  -|+.          .    .  .||     +.+.++++ ..++|||++|||++.+|+.
T Consensus       193 ~~~a~~L~~aGvd~I~Vsg~--gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipVIasGGI~~~~di~  270 (333)
T TIGR02151       193 KEVAKLLADAGVSAIDVAGA--GGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSDAPDAPIIASGGLRTGLDVA  270 (333)
T ss_pred             HHHHHHHHHcCCCEEEECCC--CCCcccchhhhcccccccchhhhcccHhHHHHHHHHHhcCCCCeEEEECCCCCHHHHH
Confidence            58899999999999988763  2321          1    0  133     34555555 4689999999999999999


Q ss_pred             HHHHhCCCcCEEEEccch
Q 021156          274 KIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       274 ~l~~~G~g~~gVivG~Al  291 (316)
                      +++.+|  ++.|.+|+++
T Consensus       271 kaLalG--Ad~V~igr~~  286 (333)
T TIGR02151       271 KAIALG--ADAVGMARPF  286 (333)
T ss_pred             HHHHhC--CCeehhhHHH
Confidence            999998  9999999998

Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.

>PRK13957 indole-3-glycerol-phosphate synthase; Provisional

Probab=97.42  E-value=0.002  Score=59.36  Aligned_cols=111  Identities=11%  Similarity=0.051  Sum_probs=84.8

Q ss_pred             CceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEE
Q 021156          184 KQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYA  263 (316)
Q Consensus       184 ~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIas  263 (316)
                      ++++.+..++|..     -...|+. ....++.++++.+++.|+..|   ++..|+++-|-+++.++.+++.+++||+.-
T Consensus        38 ~~~~~vIaEiKr~-----SPs~G~i-~~~~d~~~~A~~y~~~GA~aI---SVlTe~~~F~Gs~~~l~~v~~~v~~PvL~K  108 (247)
T PRK13957         38 SRSFSIIAECKRK-----SPSAGEL-RADYHPVQIAKTYETLGASAI---SVLTDQSYFGGSLEDLKSVSSELKIPVLRK  108 (247)
T ss_pred             CCCCeEEEEEecC-----CCCCCCc-CCCCCHHHHHHHHHHCCCcEE---EEEcCCCcCCCCHHHHHHHHHhcCCCEEec
Confidence            3557777788732     1123443 245689999999999999987   677788999999999999999999999999


Q ss_pred             eCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHH
Q 021156          264 GGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHA  308 (316)
Q Consensus       264 GGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~  308 (316)
                      +.|-++.++.+....|  +++|++=-++  ++ +-.++++.+.+.
T Consensus       109 DFIid~~QI~ea~~~G--ADavLLI~~~--L~-~~~l~~l~~~a~  148 (247)
T PRK13957        109 DFILDEIQIREARAFG--ASAILLIVRI--LT-PSQIKSFLKHAS  148 (247)
T ss_pred             cccCCHHHHHHHHHcC--CCEEEeEHhh--CC-HHHHHHHHHHHH
Confidence            9999999999999998  8888776666  43 223444444443

>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein

Probab=97.42  E-value=0.00049  Score=64.88  Aligned_cols=86  Identities=20%  Similarity=0.239  Sum_probs=64.4

Q ss_pred             cCHHHHHHHHHHcCCCcceEE--------EecCC-------------ccc----HHHHHHHHHhCCCcEEEecCCC-HHH
Q 021156           93 KSAAEFANLYKEDGLTGGHAI--------MLGAD-------------PLS----KAAAIEALHAYPGGLQVGGGIN-SDN  146 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lv--------DLda~-------------~~~----~~~i~~~v~~~~~pl~vGGGIr-~e~  146 (316)
                      .+..++|+.+.++|++.+++.        |+...             +..    ...+.++.+.+++|++.-|||+ .+|
T Consensus       169 ~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ipvi~~GGI~s~~d  248 (300)
T TIGR01037       169 TDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVDIPIIGVGGITSFED  248 (300)
T ss_pred             hhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEECCCCCHHH
Confidence            356789999999999999885        22110             001    1223333345789999999998 599


Q ss_pred             HHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHh
Q 021156          147 SLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVV  182 (316)
Q Consensus       147 ~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~  182 (316)
                      +.+++.+|||.|.+|+.++.+    |+++.++.+..
T Consensus       249 a~~~l~~GAd~V~igr~~l~~----p~~~~~i~~~l  280 (300)
T TIGR01037       249 ALEFLMAGASAVQVGTAVYYR----GFAFKKIIEGL  280 (300)
T ss_pred             HHHHHHcCCCceeecHHHhcC----chHHHHHHHHH
Confidence            999999999999999999997    77777777654

This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.

>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway

Probab=97.40  E-value=0.00025  Score=66.85  Aligned_cols=162  Identities=22%  Similarity=0.185  Sum_probs=97.1

Q ss_pred             CCcEEEecCC-C---HHHHH---HHHHcCCCEEEeCCeeecC-C----CCCHHHHHHHHHHhcCceEEEeeeeeecCCee
Q 021156          133 PGGLQVGGGI-N---SDNSL---SYIEEGATHVIVTSYVFNN-G----QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKY  200 (316)
Q Consensus       133 ~~pl~vGGGI-r---~e~~~---~~l~~Gad~VVigt~~~~~-~----~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~  200 (316)
                      ++|+++.-.- .   .+|..   +.++.|||.+-++-..-+- +    ..+++...++.+... ...-+.+-+|      
T Consensus        96 ~~pvi~Si~~~~~~~~~d~~~~a~~~~~~ad~lElN~ScPn~~~~~~~~~~~~~~~~i~~~v~-~~~~~Pv~vK------  168 (295)
T PF01180_consen   96 DIPVIASINGDSEEEIEDWAELAKRLEAGADALELNLSCPNVPGGRPFGQDPELVAEIVRAVR-EAVDIPVFVK------  168 (295)
T ss_dssp             CEEEEEEE-TSSSGHHHHHHHHHHHHHHHCSEEEEESTSTTSTTSGGGGGHHHHHHHHHHHHH-HHHSSEEEEE------
T ss_pred             ceeEEEEeecCCchhHHHHHHHHHHhcCcCCceEEEeeccCCCCccccccCHHHHHHHHHHHH-hccCCCEEEE------
Confidence            5777765422 2   24422   3345899998886433211 0    113666666665542 2221222222      


Q ss_pred             EEEeCCcceecccCHHHHHHHHHHcCCCEEEEee-------cCCc----------cccCCC-----CHHHHHHHhhcCC-
Q 021156          201 AIVTDRWQKFSDVYLDERVLDFLASYADEFLVHG-------VDVE----------GKKLGI-----DDELVALLGKYSP-  257 (316)
Q Consensus       201 ~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtd-------i~~d----------G~~~G~-----d~eli~~l~~~~~-  257 (316)
                         +....  +.....+.+..+.+.|++.|..+.       +|.+          |-++|+     -+.+++++++.++ 
T Consensus       169 ---L~p~~--~~~~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V~~~~~~~~~  243 (295)
T PF01180_consen  169 ---LSPNF--TDIEPFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWVRELRKALGQ  243 (295)
T ss_dssp             ---E-STS--SCHHHHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHHHHHHHHTTT
T ss_pred             ---ecCCC--CchHHHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHHHHHHHHHhcccc
Confidence               22111  122345667777788999876211       2222          123454     3456777888777 


Q ss_pred             -CcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHHh
Q 021156          258 -IPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       258 -iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~~  309 (316)
                       +|||++|||.|.+|+.+.+.+|  ++.|-+++++ +|.|+-.++++.+-+.+
T Consensus       244 ~i~Iig~GGI~s~~da~e~l~aG--A~~Vqv~Sal-~~~Gp~~~~~i~~~L~~  293 (295)
T PF01180_consen  244 DIPIIGVGGIHSGEDAIEFLMAG--ASAVQVCSAL-IYRGPGVIRRINRELEE  293 (295)
T ss_dssp             SSEEEEESS--SHHHHHHHHHHT--ESEEEESHHH-HHHGTTHHHHHHHHHHH
T ss_pred             ceEEEEeCCcCCHHHHHHHHHhC--CCHheechhh-hhcCcHHHHHHHHHHHh
Confidence             9999999999999999999999  8999999999 56688888888765544

DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....

>PLN02535 glycolate oxidase

Probab=97.40  E-value=0.001  Score=64.68  Aligned_cols=71  Identities=20%  Similarity=0.240  Sum_probs=56.6

Q ss_pred             HHHHHHHHcCCCEEEEeecCCccccCC--C-CHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          217 ERVLDFLASYADEFLVHGVDVEGKKLG--I-DDELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       217 e~a~~~~~~Ga~~ilvtdi~~dG~~~G--~-d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      +.++.+.+.|++.|.+.+--  |...+  + -.+.+.++.+.+  ++|||+.|||++-.|+.+++.+|  +++|.+|+++
T Consensus       235 ~dA~~a~~~GvD~I~vsn~G--Gr~~d~~~~t~~~L~ev~~av~~~ipVi~dGGIr~g~Dv~KALalG--A~aV~vGr~~  310 (364)
T PLN02535        235 EDAIKAVEVGVAGIIVSNHG--ARQLDYSPATISVLEEVVQAVGGRVPVLLDGGVRRGTDVFKALALG--AQAVLVGRPV  310 (364)
T ss_pred             HHHHHHHhcCCCEEEEeCCC--cCCCCCChHHHHHHHHHHHHHhcCCCEEeeCCCCCHHHHHHHHHcC--CCEEEECHHH
Confidence            56899999999999875432  33222  2 256777776654  69999999999999999999999  8999999998

>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=97.39  E-value=0.026  Score=50.50  Aligned_cols=171  Identities=15%  Similarity=0.109  Sum_probs=110.2

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHH-hCCCcEEEecCC-C-HHHHHHHHHcCCCEEEeCCeeecCCCC
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALH-AYPGGLQVGGGI-N-SDNSLSYIEEGATHVIVTSYVFNNGQM  170 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~-~~~~pl~vGGGI-r-~e~~~~~l~~Gad~VVigt~~~~~~~~  170 (316)
                      +..++++.+.+.|++-+-+..-   .+.....++.++ +.+ .+.+|.|- . .++++++.++||+.+|-=..       
T Consensus        17 ~a~~ia~al~~gGi~~iEit~~---tp~a~~~I~~l~~~~~-~~~vGAGTVl~~e~a~~ai~aGA~FivSP~~-------   85 (201)
T PRK06015         17 HAVPLARALAAGGLPAIEITLR---TPAALDAIRAVAAEVE-EAIVGAGTILNAKQFEDAAKAGSRFIVSPGT-------   85 (201)
T ss_pred             HHHHHHHHHHHCCCCEEEEeCC---CccHHHHHHHHHHHCC-CCEEeeEeCcCHHHHHHHHHcCCCEEECCCC-------
Confidence            4567888888888775444432   233444445554 454 47788776 4 59999999999998764332       


Q ss_pred             CHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHH
Q 021156          171 DLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVA  250 (316)
Q Consensus       171 ~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~  250 (316)
                      +++.++.. ++++    ++.+-     |        -     .++ ..+....+.|++.+=+..-+.-   .|+  ..++
T Consensus        86 ~~~vi~~a-~~~~----i~~iP-----G--------~-----~Tp-tEi~~A~~~Ga~~vK~FPa~~~---GG~--~yik  136 (201)
T PRK06015         86 TQELLAAA-NDSD----VPLLP-----G--------A-----ATP-SEVMALREEGYTVLKFFPAEQA---GGA--AFLK  136 (201)
T ss_pred             CHHHHHHH-HHcC----CCEeC-----C--------C-----CCH-HHHHHHHHCCCCEEEECCchhh---CCH--HHHH
Confidence            37776554 4554    23331     1        1     123 4566777899998866664322   233  4677


Q ss_pred             HHhh-cCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcc----cHHHHHHHHHh
Q 021156          251 LLGK-YSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNL----AYKDVVAWHAQ  309 (316)
Q Consensus       251 ~l~~-~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~----~~~~~~~~~~~  309 (316)
                      .++. ..++|++..|||.. +++.+.+++|  ...++.|+.+  +...+    .++++.+.+++
T Consensus       137 al~~plp~~~l~ptGGV~~-~n~~~~l~ag--~~~~~ggs~l--~~~~~~~~~~~~~i~~~a~~  195 (201)
T PRK06015        137 ALSSPLAGTFFCPTGGISL-KNARDYLSLP--NVVCVGGSWV--APKELVAAGDWAGITKLAAE  195 (201)
T ss_pred             HHHhhCCCCcEEecCCCCH-HHHHHHHhCC--CeEEEEchhh--CCchhhhcccHHHHHHHHHH
Confidence            7765 35799999999977 7999999998  5567778888  65433    34555554444

>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily

Probab=97.38  E-value=0.0043  Score=57.42  Aligned_cols=139  Identities=17%  Similarity=0.084  Sum_probs=99.0

Q ss_pred             HHHHHHHHcCCCEE--EeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH
Q 021156          145 DNSLSYIEEGATHV--IVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF  222 (316)
Q Consensus       145 e~~~~~l~~Gad~V--Vigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~  222 (316)
                      +.++++.+.|...+  =+|....++    .+.++.+.+.+|+ .+.+.+|..          .+|..   .+..++++.+
T Consensus        91 ~~~~~~~~~G~~~~KiKvg~~~~~d----~~~v~~vr~~~g~-~~~l~vDan----------~~~~~---~~a~~~~~~l  152 (265)
T cd03315          91 EEARRALEAGFRTFKLKVGRDPARD----VAVVAALREAVGD-DAELRVDAN----------RGWTP---KQAIRALRAL  152 (265)
T ss_pred             HHHHHHHHCCCCEEEEecCCCHHHH----HHHHHHHHHhcCC-CCEEEEeCC----------CCcCH---HHHHHHHHHH
Confidence            46777888897744  345432233    7889999998974 566788873          35653   2466788888


Q ss_pred             HHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHH
Q 021156          223 LASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKD  302 (316)
Q Consensus       223 ~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~  302 (316)
                      .+.++..+  -     .-....|++.++++++.+++||.+.+.+.+..++.++.+.+ .++.+.+--+.  .+|-....+
T Consensus       153 ~~~~i~~i--E-----eP~~~~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~-~~d~v~~k~~~--~GGi~~~~~  222 (265)
T cd03315         153 EDLGLDYV--E-----QPLPADDLEGRAALARATDTPIMADESAFTPHDAFRELALG-AADAVNIKTAK--TGGLTKAQR  222 (265)
T ss_pred             HhcCCCEE--E-----CCCCcccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhC-CCCEEEEeccc--ccCHHHHHH
Confidence            88887644  1     12344589999999999999999999999999999999887 47777776666  666555666


Q ss_pred             HHHHHHhhc
Q 021156          303 VVAWHAQQE  311 (316)
Q Consensus       303 ~~~~~~~~~  311 (316)
                      +.+++++..
T Consensus       223 ~~~~A~~~g  231 (265)
T cd03315         223 VLAVAEALG  231 (265)
T ss_pred             HHHHHHHcC
Confidence            666665543

Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.

>PRK10415 tRNA-dihydrouridine synthase B; Provisional

Probab=97.37  E-value=0.00082  Score=64.31  Aligned_cols=85  Identities=9%  Similarity=0.067  Sum_probs=68.3

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCC-----cccHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHH-cCCCEEEeCCeeec
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGAD-----PLSKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIE-EGATHVIVTSYVFN  166 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~-----~~~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~-~Gad~VVigt~~~~  166 (316)
                      +..++|+.+.++|++.+++-.-...     ..+...+.++.+++++||+.-|||+ .++++++++ .|||.|.+|..++.
T Consensus       150 ~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l~  229 (321)
T PRK10415        150 NCVEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQG  229 (321)
T ss_pred             hHHHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhhc
Confidence            5778999999999998877654422     2345555555556899999999998 599999997 69999999999999


Q ss_pred             CCCCCHHHHHHHHHHh
Q 021156          167 NGQMDLERLKDLVRVV  182 (316)
Q Consensus       167 ~~~~~~eli~ei~~~~  182 (316)
                      |    |.++.++.+.+
T Consensus       230 n----P~if~~~~~~~  241 (321)
T PRK10415        230 R----PWIFREIQHYL  241 (321)
T ss_pred             C----ChHHHHHHHHH
Confidence            8    99999987644

>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed

Probab=97.36  E-value=0.0071  Score=56.85  Aligned_cols=156  Identities=16%  Similarity=0.116  Sum_probs=98.7

Q ss_pred             HHHHhCCCc--EEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEe
Q 021156          127 EALHAYPGG--LQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVT  204 (316)
Q Consensus       127 ~~v~~~~~p--l~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~  204 (316)
                      ...++..+|  +-.+=|-..+.+++++++|++.|.++...+.- +=|.+..+++++..-+  .-+++-.-.  |  .+.-
T Consensus        68 ~~A~~~~vPV~lHLDH~~~~e~i~~Ai~~GftSVM~DgS~l~~-eeNi~~T~~vve~Ah~--~gv~VEaEl--G--~vgg  140 (283)
T PRK07998         68 RHADKMDVPVSLHLDHGKTFEDVKQAVRAGFTSVMIDGAALPF-EENIAFTKEAVDFAKS--YGVPVEAEL--G--AILG  140 (283)
T ss_pred             HHHHHCCCCEEEECcCCCCHHHHHHHHHcCCCEEEEeCCCCCH-HHHHHHHHHHHHHHHH--cCCEEEEEe--c--cCCC
Confidence            333444555  45566666799999999999999996544421 0024555555544311  112332210  1  1110


Q ss_pred             -CCc---ceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCC--CHHHHHHHhhcCCCcEEEEeCCCCH-HHHHHHHH
Q 021156          205 -DRW---QKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGI--DDELVALLGKYSPIPVTYAGGVTTM-ADLEKIKV  277 (316)
Q Consensus       205 -~gw---~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~--d~eli~~l~~~~~iPVIasGGI~s~-eDi~~l~~  277 (316)
                       .+.   ....--++.+..+.+.+.|++.+-+--=+.-|.+.+|  |++.++++.+.+++|+..-||=+.. ++++++.+
T Consensus       141 ~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~~~vPLVlHGgSG~~~e~~~~ai~  220 (283)
T PRK07998        141 KEDDHVSEADCKTEPEKVKDFVERTGCDMLAVSIGNVHGLEDIPRIDIPLLKRIAEVSPVPLVIHGGSGIPPEILRSFVN  220 (283)
T ss_pred             ccccccccccccCCHHHHHHHHHHhCcCeeehhccccccCCCCCCcCHHHHHHHHhhCCCCEEEeCCCCCCHHHHHHHHH
Confidence             000   0111126777777777899997643333445666544  8999999999999999999998877 67788888


Q ss_pred             hCCCcCEEEEccch
Q 021156          278 AGIGRVDVTVGSAL  291 (316)
Q Consensus       278 ~G~g~~gVivG~Al  291 (316)
                      .|  +..+-|++.+
T Consensus       221 ~G--i~KiNi~Tel  232 (283)
T PRK07998        221 YK--VAKVNIASDL  232 (283)
T ss_pred             cC--CcEEEECHHH
Confidence            88  9999999987

>cd02911 arch_FMN Archeal FMN-binding domain

Probab=97.34  E-value=0.00079  Score=61.57  Aligned_cols=78  Identities=15%  Similarity=0.082  Sum_probs=59.6

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCC-cccHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCC
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGAD-PLSKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMD  171 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~-~~~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~  171 (316)
                      +.+++|+.+.++|++.+|+-..... ..+...+ +.++ .++|++.-|||+ .++++++++.|||.|.+|..  .+    
T Consensus       153 ~~~~la~~l~~aG~d~ihv~~~~~g~~ad~~~I-~~i~-~~ipVIgnGgI~s~eda~~~l~~GaD~VmiGR~--~~----  224 (233)
T cd02911         153 DDEELARLIEKAGADIIHVDAMDPGNHADLKKI-RDIS-TELFIIGNNSVTTIESAKEMFSYGADMVSVARA--SL----  224 (233)
T ss_pred             CHHHHHHHHHHhCCCEEEECcCCCCCCCcHHHH-HHhc-CCCEEEEECCcCCHHHHHHHHHcCCCEEEEcCC--CC----
Confidence            6788999999999999888433222 2233333 3333 679999999998 59999999999999999999  54    


Q ss_pred             HHHHHHHH
Q 021156          172 LERLKDLV  179 (316)
Q Consensus       172 ~eli~ei~  179 (316)
                      |.+++++.
T Consensus       225 p~~~~~~~  232 (233)
T cd02911         225 PENIEWLV  232 (233)
T ss_pred             chHHHHhh
Confidence            87887763

This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.

>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=97.33  E-value=0.016  Score=52.66  Aligned_cols=171  Identities=17%  Similarity=0.092  Sum_probs=110.5

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHH-----hCCCcEEEecCC-C-HHHHHHHHHcCCCEEEeCCeeec
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALH-----AYPGGLQVGGGI-N-SDNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~-----~~~~pl~vGGGI-r-~e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      +..++++.+.+.|++-+-+..=   .++....++.++     +.+ .+.+|.|- . .++++.+.++||+.+|-=..   
T Consensus        28 ~a~~~~~al~~gGi~~iEiT~~---tp~a~~~i~~l~~~~~~~~p-~~~vGaGTVl~~e~a~~a~~aGA~FiVsP~~---  100 (222)
T PRK07114         28 VAKKVIKACYDGGARVFEFTNR---GDFAHEVFAELVKYAAKELP-GMILGVGSIVDAATAALYIQLGANFIVTPLF---  100 (222)
T ss_pred             HHHHHHHHHHHCCCCEEEEeCC---CCcHHHHHHHHHHHHHhhCC-CeEEeeEeCcCHHHHHHHHHcCCCEEECCCC---
Confidence            5667888888888775444432   222333333332     222 37888776 4 59999999999998764331   


Q ss_pred             CCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCH
Q 021156          167 NGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDD  246 (316)
Q Consensus       167 ~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~  246 (316)
                          ++++++... +++    ++.+-     |        -     .++ ..+....+.|++.+=+...+    .-|  .
T Consensus       101 ----~~~v~~~~~-~~~----i~~iP-----G--------~-----~Tp-sEi~~A~~~Ga~~vKlFPA~----~~G--~  146 (222)
T PRK07114        101 ----NPDIAKVCN-RRK----VPYSP-----G--------C-----GSL-SEIGYAEELGCEIVKLFPGS----VYG--P  146 (222)
T ss_pred             ----CHHHHHHHH-HcC----CCEeC-----C--------C-----CCH-HHHHHHHHCCCCEEEECccc----ccC--H
Confidence                377765554 443    22221     1        1     123 45667778999988666633    124  5


Q ss_pred             HHHHHHhhc-CCCcEEEEeCCCC-HHHHHHHHHhCCCcCEEEEccchhhccCcc----cHHHHHHHHHh
Q 021156          247 ELVALLGKY-SPIPVTYAGGVTT-MADLEKIKVAGIGRVDVTVGSALDIFGGNL----AYKDVVAWHAQ  309 (316)
Q Consensus       247 eli~~l~~~-~~iPVIasGGI~s-~eDi~~l~~~G~g~~gVivG~Al~~~~g~~----~~~~~~~~~~~  309 (316)
                      ..++.+..- .++|++..|||.. .+++.+.++.|  +.+|-+|+.+  +...+    .++++.+.+++
T Consensus       147 ~~ikal~~p~p~i~~~ptGGV~~~~~n~~~yl~aG--a~avg~Gs~L--~~~~~~~~~~~~~i~~~a~~  211 (222)
T PRK07114        147 GFVKAIKGPMPWTKIMPTGGVEPTEENLKKWFGAG--VTCVGMGSKL--IPKEALAAKDYAGIEQKVRE  211 (222)
T ss_pred             HHHHHHhccCCCCeEEeCCCCCcchhcHHHHHhCC--CEEEEEChhh--cCccccccccHHHHHHHHHH
Confidence            678888763 5799999999996 69999999988  8999999999  75332    34555554433

>PRK08185 hypothetical protein; Provisional

Probab=97.30  E-value=0.017  Score=54.44  Aligned_cols=151  Identities=17%  Similarity=0.217  Sum_probs=96.6

Q ss_pred             HHhCCCcE--EEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHH---HHhcCceEEEeeeeeecCCeeEEE
Q 021156          129 LHAYPGGL--QVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLV---RVVGKQRLVLDLSCRKKDGKYAIV  203 (316)
Q Consensus       129 v~~~~~pl--~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~---~~~G~~~IvvslD~k~~~g~~~v~  203 (316)
                      .++..+|+  -.+=|-..++++++++.|.+.|.+....+.. +=|.++.++++   +.+|   +-+..-+    |  .+.
T Consensus        64 a~~~~vPV~lHLDHg~~~e~i~~ai~~Gf~SVM~D~S~l~~-eeNi~~t~~vv~~a~~~g---v~vE~El----G--~vg  133 (283)
T PRK08185         64 AKRSPVPFVIHLDHGATIEDVMRAIRCGFTSVMIDGSLLPY-EENVALTKEVVELAHKVG---VSVEGEL----G--TIG  133 (283)
T ss_pred             HHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCH-HHHHHHHHHHHHHHHHcC---CeEEEEE----e--ecc
Confidence            33455554  4555666799999999999999997665532 00244555555   4444   2222221    1  110


Q ss_pred             e-----CCcceeccc-CHHHHHHHHHHcCCCEEEE-----eecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCH-HH
Q 021156          204 T-----DRWQKFSDV-YLDERVLDFLASYADEFLV-----HGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTM-AD  271 (316)
Q Consensus       204 ~-----~gw~~~~~~-~~~e~a~~~~~~Ga~~ilv-----tdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~-eD  271 (316)
                      .     ..+...... ++.+..+...+.|++.+.+     |.+-..+...+.|++.++++++.+++|+.+-||.+.+ ++
T Consensus       134 ~~e~~~~~~~~~~~~t~peea~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~~iPLVlHGgsg~~~e~  213 (283)
T PRK08185        134 NTGTSIEGGVSEIIYTDPEQAEDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERVDIPLVLHGGSANPDAE  213 (283)
T ss_pred             CcccccccccccccCCCHHHHHHHHHhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhhCCCEEEECCCCCCHHH
Confidence            0     001110002 4544444444459999877     7776555445679999999999999999999999654 66


Q ss_pred             HHHHHHhCCCcCEEEEccch
Q 021156          272 LEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       272 i~~l~~~G~g~~gVivG~Al  291 (316)
                      ++++.+.|  +..+=|++.+
T Consensus       214 ~~~ai~~G--I~KiNi~T~l  231 (283)
T PRK08185        214 IAESVQLG--VGKINISSDM  231 (283)
T ss_pred             HHHHHHCC--CeEEEeChHH
Confidence            78888888  9999999877

>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=97.27  E-value=0.0027  Score=59.39  Aligned_cols=90  Identities=13%  Similarity=0.206  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHhcC-ceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHH
Q 021156          172 LERLKDLVRVVGK-QRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVA  250 (316)
Q Consensus       172 ~eli~ei~~~~G~-~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~  250 (316)
                      .+.++++.++++. .+|.+  ++.                    ..|.++++.+.|++.|.         +..++.+.++
T Consensus       169 ~~~v~~~k~~~p~~~~I~V--Ev~--------------------tleea~~A~~~GaDiI~---------LDn~~~e~l~  217 (273)
T PRK05848        169 KEFIQHARKNIPFTAKIEI--ECE--------------------SLEEAKNAMNAGADIVM---------CDNMSVEEIK  217 (273)
T ss_pred             HHHHHHHHHhCCCCceEEE--EeC--------------------CHHHHHHHHHcCCCEEE---------ECCCCHHHHH
Confidence            5678888888853 34433  332                    24778888899999765         2245778777


Q ss_pred             HHhhc-----CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCc
Q 021156          251 LLGKY-----SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGN  297 (316)
Q Consensus       251 ~l~~~-----~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~  297 (316)
                      ++.+.     .++.++++||| +++.+.++.+.|  ++.+.+|+..  |..+
T Consensus       218 ~~v~~~~~~~~~~~ieAsGgI-t~~ni~~ya~~G--vD~IsvG~l~--~sa~  264 (273)
T PRK05848        218 EVVAYRNANYPHVLLEASGNI-TLENINAYAKSG--VDAISSGSLI--HQAT  264 (273)
T ss_pred             HHHHHhhccCCCeEEEEECCC-CHHHHHHHHHcC--CCEEEeChhh--cCCC
Confidence            77654     25569999999 999999999998  9999999998  7443

>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain

Probab=97.21  E-value=0.0025  Score=62.31  Aligned_cols=72  Identities=19%  Similarity=0.226  Sum_probs=57.8

Q ss_pred             HHHHHHHHHcCCCEEEEeecCCcccc--CCC-CHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccc
Q 021156          216 DERVLDFLASYADEFLVHGVDVEGKK--LGI-DDELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSA  290 (316)
Q Consensus       216 ~e~a~~~~~~Ga~~ilvtdi~~dG~~--~G~-d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~A  290 (316)
                      .+.++.+.+.|++.|++..-  .|+.  .++ -.+.+.++++.+  ++||++.|||++-.|+.+++.+|  +++|.+|++
T Consensus       264 ~~dA~~a~~~G~d~I~vsnh--GGr~~d~~~~t~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALaLG--A~~v~iGr~  339 (383)
T cd03332         264 PDDARRAVEAGVDGVVVSNH--GGRQVDGSIAALDALPEIVEAVGDRLTVLFDSGVRTGADIMKALALG--AKAVLIGRP  339 (383)
T ss_pred             HHHHHHHHHCCCCEEEEcCC--CCcCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHHcC--CCEEEEcHH
Confidence            47888999999999987431  2221  233 467788887655  59999999999999999999999  999999998


Q ss_pred             h
Q 021156          291 L  291 (316)
Q Consensus       291 l  291 (316)
                      +
T Consensus       340 ~  340 (383)
T cd03332         340 Y  340 (383)
T ss_pred             H
Confidence            8

LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.

>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain

Probab=97.20  E-value=0.00077  Score=64.17  Aligned_cols=83  Identities=17%  Similarity=0.095  Sum_probs=63.1

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCc------------ccHHHHHHHH-HhCCCcEEEecCCC-HHHHHHHHHc-CCCEE
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADP------------LSKAAAIEAL-HAYPGGLQVGGGIN-SDNSLSYIEE-GATHV  158 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~------------~~~~~i~~~v-~~~~~pl~vGGGIr-~e~~~~~l~~-Gad~V  158 (316)
                      +.+++++.+.+.|++.+|+..-....            .......+.+ +.+++||.++|||+ .++++++++. |||.|
T Consensus       229 e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V  308 (327)
T cd02803         229 EAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGKADLV  308 (327)
T ss_pred             HHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCCCee
Confidence            46678999999999988875443221            1112233334 45789999999998 5999999998 79999


Q ss_pred             EeCCeeecCCCCCHHHHHHHHH
Q 021156          159 IVTSYVFNNGQMDLERLKDLVR  180 (316)
Q Consensus       159 Vigt~~~~~~~~~~eli~ei~~  180 (316)
                      .+|+.++.|    |+++.++.+
T Consensus       309 ~igR~~lad----P~l~~k~~~  326 (327)
T cd02803         309 ALGRALLAD----PDLPNKARE  326 (327)
T ss_pred             eecHHHHhC----ccHHHHHhc
Confidence            999999998    999888753

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>TIGR00262 trpA tryptophan synthase, alpha subunit

Probab=97.20  E-value=0.0017  Score=60.26  Aligned_cols=74  Identities=19%  Similarity=0.122  Sum_probs=51.5

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCCc-------ccHHHHHHHHH-hCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCe
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGADP-------LSKAAAIEALH-AYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSY  163 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~~-------~~~~~i~~~v~-~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~  163 (316)
                      ..|.+.++.+.+..-..++++-..+..       ......++.++ ..+.|+.+||||+ .++++++.++|||.||+||+
T Consensus       150 ~T~~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGSa  229 (256)
T TIGR00262       150 NADDERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYSAKPVLVGFGISKPEQVKQAIDAGADGVIVGSA  229 (256)
T ss_pred             CCCHHHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEECHH
Confidence            345566666666543456666655321       12233344444 3578999999998 69999999999999999999


Q ss_pred             eec
Q 021156          164 VFN  166 (316)
Q Consensus       164 ~~~  166 (316)
                      .++
T Consensus       230 iv~  232 (256)
T TIGR00262       230 IVK  232 (256)
T ss_pred             HHH
Confidence            876

Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.

>PRK07226 fructose-bisphosphate aldolase; Provisional

Probab=97.20  E-value=0.0081  Score=55.91  Aligned_cols=69  Identities=25%  Similarity=0.210  Sum_probs=53.8

Q ss_pred             HHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCC--CHHHHHHHH----HhCCCcCEEEEccc
Q 021156          217 ERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVT--TMADLEKIK----VAGIGRVDVTVGSA  290 (316)
Q Consensus       217 e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~--s~eDi~~l~----~~G~g~~gVivG~A  290 (316)
                      ..++.+.+.|++.+= ++      +. .+.+.++++.+.+++||.++|||+  +.+++.+..    +.|  ++|+.+|++
T Consensus       164 ~a~~~a~e~GAD~vK-t~------~~-~~~~~l~~~~~~~~ipV~a~GGi~~~~~~~~l~~v~~~~~aG--A~Gis~gr~  233 (267)
T PRK07226        164 HAARVAAELGADIVK-TN------YT-GDPESFREVVEGCPVPVVIAGGPKTDTDREFLEMVRDAMEAG--AAGVAVGRN  233 (267)
T ss_pred             HHHHHHHHHCCCEEe-eC------CC-CCHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcC--CcEEehhhh
Confidence            446778889999762 22      11 378899999887789999999999  888777765    777  899999999


Q ss_pred             hhhccCc
Q 021156          291 LDIFGGN  297 (316)
Q Consensus       291 l~~~~g~  297 (316)
                      +  +..+
T Consensus       234 i--~~~~  238 (267)
T PRK07226        234 V--FQHE  238 (267)
T ss_pred             h--hcCC
Confidence            9  6543

>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water

Probab=97.19  E-value=0.003  Score=56.70  Aligned_cols=75  Identities=13%  Similarity=-0.048  Sum_probs=62.3

Q ss_pred             ccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          212 DVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       212 ~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      ..++.++++.+.+.|++.+  |-.+.++... -+.+.++.+++.+++||+..|++.+.+++..+.+.|  +++|+++...
T Consensus        30 ~~~~~~~A~~~~~~GA~~l--~v~~~~~~~~-g~~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~G--ad~v~l~~~~  104 (217)
T cd00331          30 DFDPVEIAKAYEKAGAAAI--SVLTEPKYFQ-GSLEDLRAVREAVSLPVLRKDFIIDPYQIYEARAAG--ADAVLLIVAA  104 (217)
T ss_pred             CCCHHHHHHHHHHcCCCEE--EEEeCccccC-CCHHHHHHHHHhcCCCEEECCeecCHHHHHHHHHcC--CCEEEEeecc
Confidence            3479999999999999987  5555555544 345677777777799999999999999999999999  9999999887

IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.

>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae

Probab=97.18  E-value=0.031  Score=50.32  Aligned_cols=170  Identities=18%  Similarity=0.236  Sum_probs=104.9

Q ss_pred             HHHHHHHcCCCcceEEEecCCcccHHHHHHHHH-hCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCe--eecCCC-CCHH
Q 021156           98 FANLYKEDGLTGGHAIMLGADPLSKAAAIEALH-AYPGGLQVGGGINSDNSLSYIEEGATHVIVTSY--VFNNGQ-MDLE  173 (316)
Q Consensus        98 ~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~-~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~--~~~~~~-~~~e  173 (316)
                      +++....+..-+-.++|+-++    +.+.+.++ ..++|+.|.+ +..+..-...++|||.|=||+.  ++..|+ +..+
T Consensus        29 V~~i~~AA~~ggAt~vDIAad----p~LV~~~~~~s~lPICVSa-Vep~~f~~aV~AGAdliEIGNfDsFY~qGr~f~a~  103 (242)
T PF04481_consen   29 VAAIVKAAEIGGATFVDIAAD----PELVKLAKSLSNLPICVSA-VEPELFVAAVKAGADLIEIGNFDSFYAQGRRFSAE  103 (242)
T ss_pred             HHHHHHHHHccCCceEEecCC----HHHHHHHHHhCCCCeEeec-CCHHHHHHHHHhCCCEEEecchHHHHhcCCeecHH
Confidence            333333333334447888553    23445555 4789999975 6678888999999999999974  344453 4555


Q ss_pred             HHHHHHHHhcC--ceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCC----CHH
Q 021156          174 RLKDLVRVVGK--QRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGI----DDE  247 (316)
Q Consensus       174 li~ei~~~~G~--~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~----d~e  247 (316)
                      .+-++.++...  -.+.+|+.+-  +   .+..        ..-.+++.++++.|++-|= |   .-|+-.-|    -..
T Consensus       104 eVL~Lt~~tR~LLP~~~LsVTVP--H---iL~l--------d~Qv~LA~~L~~~GaDiIQ-T---EGgtss~p~~~g~lg  166 (242)
T PF04481_consen  104 EVLALTRETRSLLPDITLSVTVP--H---ILPL--------DQQVQLAEDLVKAGADIIQ-T---EGGTSSKPTSPGILG  166 (242)
T ss_pred             HHHHHHHHHHHhCCCCceEEecC--c---cccH--------HHHHHHHHHHHHhCCcEEE-c---CCCCCCCCCCcchHH
Confidence            55555544310  1355666553  1   1110        1245789999999999652 1   11221111    222


Q ss_pred             HHH----------HHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchh
Q 021156          248 LVA----------LLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALD  292 (316)
Q Consensus       248 li~----------~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~  292 (316)
                      +++          .+.+.+++||+.+-|+++.- .--.+..|  +.||=||+|+-
T Consensus       167 lIekaapTLAaay~ISr~v~iPVlcASGlS~vT-~PmAiaaG--AsGVGVGSavn  218 (242)
T PF04481_consen  167 LIEKAAPTLAAAYAISRAVSIPVLCASGLSAVT-APMAIAAG--ASGVGVGSAVN  218 (242)
T ss_pred             HHHHHhHHHHHHHHHHhccCCceEeccCcchhh-HHHHHHcC--CcccchhHHhh
Confidence            333          45567899999999999874 45555567  89999999993

As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.

>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family

Probab=97.17  E-value=0.0017  Score=61.95  Aligned_cols=85  Identities=12%  Similarity=0.072  Sum_probs=65.4

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCC-----cccHHHHHHHHHhCCCcEEEecCCC-HHHHHHHH-HcCCCEEEeCCeeec
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGAD-----PLSKAAAIEALHAYPGGLQVGGGIN-SDNSLSYI-EEGATHVIVTSYVFN  166 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~-----~~~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l-~~Gad~VVigt~~~~  166 (316)
                      +..++++.+.+.|++.+++---...     +.+.+.+.++.+.+++|++.-|||+ .+++++++ ..|||.|.+|..++.
T Consensus       148 ~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~l~  227 (319)
T TIGR00737       148 NAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGALG  227 (319)
T ss_pred             hHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhhhh
Confidence            4678999999999998876422111     1234434444446889999999998 59999999 589999999999999


Q ss_pred             CCCCCHHHHHHHHHHh
Q 021156          167 NGQMDLERLKDLVRVV  182 (316)
Q Consensus       167 ~~~~~~eli~ei~~~~  182 (316)
                      |    |.++.++.+.+
T Consensus       228 ~----P~l~~~~~~~~  239 (319)
T TIGR00737       228 N----PWLFRQIEQYL  239 (319)
T ss_pred             C----ChHHHHHHHHH
Confidence            7    99999987665

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist

Probab=97.15  E-value=0.012  Score=55.37  Aligned_cols=152  Identities=16%  Similarity=0.247  Sum_probs=91.8

Q ss_pred             HHHhCC-CcEEEe--cCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHH---HHhcCceEEEeeeeeecCCeeE
Q 021156          128 ALHAYP-GGLQVG--GGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLV---RVVGKQRLVLDLSCRKKDGKYA  201 (316)
Q Consensus       128 ~v~~~~-~pl~vG--GGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~---~~~G~~~IvvslD~k~~~g~~~  201 (316)
                      ..++.+ +|+.+=  -|-..+.+++.++.|++.|.+........+ +.+..+++.   +.+|- .+-..+..-  +|+..
T Consensus        68 ~a~~~~~vpv~lhlDH~~~~e~i~~ai~~Gf~sVmid~s~l~~~e-ni~~t~~v~~~a~~~gv-~Ve~ElG~~--gg~ed  143 (282)
T TIGR01859        68 LIERMSIVPVALHLDHGSSYESCIKAIKAGFSSVMIDGSHLPFEE-NLALTKKVVEIAHAKGV-SVEAELGTL--GGIED  143 (282)
T ss_pred             HHHHCCCCeEEEECCCCCCHHHHHHHHHcCCCEEEECCCCCCHHH-HHHHHHHHHHHHHHcCC-EEEEeeCCC--cCccc
Confidence            344556 776654  343468899999999999999766554200 133444444   44541 111111110  11000


Q ss_pred             EEeCCcceecccCHHHHHHHHHH-cCCCEEEE-----eecCCccccCCCCHHHHHHHhhcCCCcEEEEe--CCCCHHHHH
Q 021156          202 IVTDRWQKFSDVYLDERVLDFLA-SYADEFLV-----HGVDVEGKKLGIDDELVALLGKYSPIPVTYAG--GVTTMADLE  273 (316)
Q Consensus       202 v~~~gw~~~~~~~~~e~a~~~~~-~Ga~~ilv-----tdi~~dG~~~G~d~eli~~l~~~~~iPVIasG--GI~s~eDi~  273 (316)
                       ...+ ...+--++ |.++++.+ .|++.+.+     |.+.. + ....|++.++++++.+++|+.+-|  |+.. +++.
T Consensus       144 -~~~g-~~~~~t~~-eea~~f~~~tgvD~Lavs~Gt~hg~~~-~-~~~l~~e~L~~i~~~~~iPlv~hGgSGi~~-e~i~  217 (282)
T TIGR01859       144 -GVDE-KEAELADP-DEAEQFVKETGVDYLAAAIGTSHGKYK-G-EPGLDFERLKEIKELTNIPLVLHGASGIPE-EQIK  217 (282)
T ss_pred             -cccc-cccccCCH-HHHHHHHHHHCcCEEeeccCccccccC-C-CCccCHHHHHHHHHHhCCCEEEECCCCCCH-HHHH
Confidence             0001 00111145 44555554 89998763     33221 1 133599999999999999999999  8765 6799


Q ss_pred             HHHHhCCCcCEEEEccch
Q 021156          274 KIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       274 ~l~~~G~g~~gVivG~Al  291 (316)
                      ++.+.|  +.++-|++.+
T Consensus       218 ~~i~~G--i~kiNv~T~l  233 (282)
T TIGR01859       218 KAIKLG--IAKINIDTDC  233 (282)
T ss_pred             HHHHcC--CCEEEECcHH
Confidence            999998  9999999988

This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.

>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase

Probab=97.14  E-value=0.0074  Score=55.81  Aligned_cols=185  Identities=15%  Similarity=0.032  Sum_probs=101.3

Q ss_pred             ccCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHH-HhCCCcEEEecCCC---------H-HHHHHHHHcCCCEEEe
Q 021156           92 DKSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEAL-HAYPGGLQVGGGIN---------S-DNSLSYIEEGATHVIV  160 (316)
Q Consensus        92 ~~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v-~~~~~pl~vGGGIr---------~-e~~~~~l~~Gad~VVi  160 (316)
                      ..+|.++.+...+.+++.+.+----     -....+.. ..+.+-+.+++|..         . ..++.+++.||+-|-+
T Consensus        35 ~~~~~~~~~~a~~~~~~~v~~~p~~-----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~~Ga~~v~~  109 (258)
T TIGR01949        35 LVDIRKTVNEVAEGGADAVLLHKGI-----VRRGHRGYGKDVGLIIHLSASTSLSPDPNDKRIVTTVEDAIRMGADAVSI  109 (258)
T ss_pred             cCCHHHHHHHHHhcCCCEEEeCcch-----hhhcccccCCCCcEEEEEcCCCCCCCCCCcceeeeeHHHHHHCCCCEEEE
Confidence            3578888887777776654332100     00000111 12333345555542         1 3488999999996655


Q ss_pred             CCe--eecCCCCCHHHHHHHHH---HhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeec
Q 021156          161 TSY--VFNNGQMDLERLKDLVR---VVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGV  235 (316)
Q Consensus       161 gt~--~~~~~~~~~eli~ei~~---~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi  235 (316)
                      -..  .....++ .+.+.++.+   .+|- .+++-+..   +|.   .... .  +.-.....++.+.+.|++.+-+ + 
T Consensus       110 ~~~~g~~~~~~~-~~~~~~i~~~~~~~g~-~liv~~~~---~Gv---h~~~-~--~~~~~~~~~~~a~~~GADyikt-~-  176 (258)
T TIGR01949       110 HVNVGSDTEWEQ-IRDLGMIAEICDDWGV-PLLAMMYP---RGP---HIDD-R--DPELVAHAARLGAELGADIVKT-P-  176 (258)
T ss_pred             EEecCCchHHHH-HHHHHHHHHHHHHcCC-CEEEEEec---cCc---cccc-c--cHHHHHHHHHHHHHHCCCEEec-c-
Confidence            221  0111000 233444443   3442 23332222   221   0111 1  1111223357788899997653 2 


Q ss_pred             CCccccCCCCHHHHHHHhhcCCCcEEEEeCCC--C----HHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156          236 DVEGKKLGIDDELVALLGKYSPIPVTYAGGVT--T----MADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVA  305 (316)
Q Consensus       236 ~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~--s----~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~  305 (316)
                           + ..+.+.++++.+.+++||.+.||++  +    .+.+.++.+.|  ++|+.+|+++  +..+ ++.+..+
T Consensus       177 -----~-~~~~~~l~~~~~~~~iPVva~GGi~~~~~~~~~~~i~~~~~aG--a~Gia~g~~i--~~~~-dp~~~~~  241 (258)
T TIGR01949       177 -----Y-TGDIDSFRDVVKGCPAPVVVAGGPKTNSDREFLQMIKDAMEAG--AAGVAVGRNI--FQHD-DPVGITK  241 (258)
T ss_pred             -----C-CCCHHHHHHHHHhCCCcEEEecCCCCCCHHHHHHHHHHHHHcC--CcEEehhhHh--hcCC-CHHHHHH
Confidence                 1 2378999999988899999999999  5    55566666888  8999999999  6543 3444433

Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.

>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain

Probab=97.13  E-value=0.0051  Score=59.45  Aligned_cols=76  Identities=20%  Similarity=0.158  Sum_probs=58.2

Q ss_pred             HHHHHHHHHcCCCEEEEeecCCcccc---CCCCHHHHHHHhhc-----CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEE
Q 021156          216 DERVLDFLASYADEFLVHGVDVEGKK---LGIDDELVALLGKY-----SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTV  287 (316)
Q Consensus       216 ~e~a~~~~~~Ga~~ilvtdi~~dG~~---~G~d~eli~~l~~~-----~~iPVIasGGI~s~eDi~~l~~~G~g~~gViv  287 (316)
                      .+.++.+.+.|++.|++-+  .-|+.   ..+-.+.+.++.+.     -++|||++|||++-.|+.+++.+|  +++|.|
T Consensus       224 ~~dA~~a~~~G~d~I~vsn--hgG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv~kalaLG--A~aV~i  299 (344)
T cd02922         224 VEDAVLAAEYGVDGIVLSN--HGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKALCLG--AKAVGL  299 (344)
T ss_pred             HHHHHHHHHcCCCEEEEEC--CCcccCCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcC--CCEEEE
Confidence            5788999999999998744  22442   12345556565542     258999999999999999999999  999999


Q ss_pred             ccchhhccCc
Q 021156          288 GSALDIFGGN  297 (316)
Q Consensus       288 G~Al~~~~g~  297 (316)
                      |+++  +.+.
T Consensus       300 G~~~--l~~l  307 (344)
T cd02922         300 GRPF--LYAL  307 (344)
T ss_pred             CHHH--HHHH
Confidence            9999  6544

FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.

>PRK05437 isopentenyl pyrophosphate isomerase; Provisional

Probab=97.13  E-value=0.0026  Score=61.65  Aligned_cols=72  Identities=18%  Similarity=0.259  Sum_probs=56.7

Q ss_pred             HHHHHHHHHcCCCEEEEeecCCcccc-------C-------------CC-CHHHHHHHhhc-CCCcEEEEeCCCCHHHHH
Q 021156          216 DERVLDFLASYADEFLVHGVDVEGKK-------L-------------GI-DDELVALLGKY-SPIPVTYAGGVTTMADLE  273 (316)
Q Consensus       216 ~e~a~~~~~~Ga~~ilvtdi~~dG~~-------~-------------G~-d~eli~~l~~~-~~iPVIasGGI~s~eDi~  273 (316)
                      .+.++.+.+.|++.|.+...  -||.       +             |. -.+.+.++++. .++|||++|||++..|+.
T Consensus       200 ~~~a~~l~~~Gvd~I~Vsg~--GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~~~ipvia~GGI~~~~dv~  277 (352)
T PRK05437        200 KETAKRLADAGVKAIDVAGA--GGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLLPDLPIIASGGIRNGLDIA  277 (352)
T ss_pred             HHHHHHHHHcCCCEEEECCC--CCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhcCCCeEEEECCCCCHHHHH
Confidence            58899999999999988653  2321       1             11 12356666665 589999999999999999


Q ss_pred             HHHHhCCCcCEEEEccch
Q 021156          274 KIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       274 ~l~~~G~g~~gVivG~Al  291 (316)
                      +++.+|  +++|.+|+++
T Consensus       278 k~l~~G--Ad~v~ig~~~  293 (352)
T PRK05437        278 KALALG--ADAVGMAGPF  293 (352)
T ss_pred             HHHHcC--CCEEEEhHHH
Confidence            999998  9999999998

>CHL00162 thiG thiamin biosynthesis protein G; Validated

Probab=97.12  E-value=0.0036  Score=57.48  Aligned_cols=76  Identities=16%  Similarity=0.240  Sum_probs=56.3

Q ss_pred             ecCCccCHHHHHHHHHHcCCCcceEEEecCC-----cccHHHHHHHHH-hCCCcEEEecCCC-HHHHHHHHHcCCCEEEe
Q 021156           88 NFESDKSAAEFANLYKEDGLTGGHAIMLGAD-----PLSKAAAIEALH-AYPGGLQVGGGIN-SDNSLSYIEEGATHVIV  160 (316)
Q Consensus        88 ~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~-----~~~~~~i~~~v~-~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVi  160 (316)
                      +|. ++||+ +|+++.+.|+.  -+.-|-+-     ...++..++++. ..++|+++|+||. .+|+...++.|||-|.+
T Consensus       142 PY~-~~D~v-~a~rLed~Gc~--aVMPlgsPIGSg~Gl~n~~~l~~i~e~~~vpVivdAGIgt~sDa~~AmElGaDgVL~  217 (267)
T CHL00162        142 PYI-NADPM-LAKHLEDIGCA--TVMPLGSPIGSGQGLQNLLNLQIIIENAKIPVIIDAGIGTPSEASQAMELGASGVLL  217 (267)
T ss_pred             ecC-CCCHH-HHHHHHHcCCe--EEeeccCcccCCCCCCCHHHHHHHHHcCCCcEEEeCCcCCHHHHHHHHHcCCCEEee
Confidence            454 35787 88888888865  23334321     234555556654 5789999999997 59999999999999999


Q ss_pred             CCeeecC
Q 021156          161 TSYVFNN  167 (316)
Q Consensus       161 gt~~~~~  167 (316)
                      +|...+.
T Consensus       218 nSaIakA  224 (267)
T CHL00162        218 NTAVAQA  224 (267)
T ss_pred             cceeecC
Confidence            9999864

>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane

Probab=97.10  E-value=0.0039  Score=57.71  Aligned_cols=89  Identities=24%  Similarity=0.281  Sum_probs=65.8

Q ss_pred             cCHHHHHHHHHH-cCCCcceEEEecCCcc-cHHHHHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCC--
Q 021156           93 KSAAEFANLYKE-DGLTGGHAIMLGADPL-SKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNG--  168 (316)
Q Consensus        93 ~~p~e~a~~~~~-~G~~~l~lvDLda~~~-~~~~i~~~v~~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~--  168 (316)
                      .+..+.++...+ .++|.+.+---..+.+ +.+.+.+..+.++.|+.+|+|++.+.+.+++.. ||-+||||.+-++|  
T Consensus       158 ~~~~~~~~~a~~~~~aDaviVtG~~TG~~~~~~~l~~vr~~~~~PVlvGSGvt~~Ni~~~l~~-ADG~IVGS~~K~~G~~  236 (254)
T PF03437_consen  158 RDLEEAAKDAVERGGADAVIVTGKATGEPPDPEKLKRVREAVPVPVLVGSGVTPENIAEYLSY-ADGAIVGSYFKKDGKW  236 (254)
T ss_pred             CCHHHHHHHHHHhcCCCEEEECCcccCCCCCHHHHHHHHhcCCCCEEEecCCCHHHHHHHHHh-CCEEEEeeeeeeCCEe
Confidence            355666666544 4688777665554433 444444444457799999999999999999976 89999999988776  


Q ss_pred             --CCCHHHHHHHHHHh
Q 021156          169 --QMDLERLKDLVRVV  182 (316)
Q Consensus       169 --~~~~eli~ei~~~~  182 (316)
                        .+|++.++++.+..
T Consensus       237 ~n~VD~~Rv~~fm~~v  252 (254)
T PF03437_consen  237 ENPVDPERVRRFMEAV  252 (254)
T ss_pred             CCcCCHHHHHHHHHHh
Confidence              47999999988764

It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.

>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=97.07  E-value=0.002  Score=61.00  Aligned_cols=86  Identities=27%  Similarity=0.282  Sum_probs=63.9

Q ss_pred             cCHHHHHHHHHHcCCCcceEE---------EecCC-----------------ccc----HHHHHHHHHhC--CCcEEEec
Q 021156           93 KSAAEFANLYKEDGLTGGHAI---------MLGAD-----------------PLS----KAAAIEALHAY--PGGLQVGG  140 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lv---------DLda~-----------------~~~----~~~i~~~v~~~--~~pl~vGG  140 (316)
                      .+..++|+...++|++++.++         |++..                 +..    ...+.++.+.+  .+||+.-|
T Consensus       180 ~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~G  259 (299)
T cd02940         180 TDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIG  259 (299)
T ss_pred             hhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEEC
Confidence            367789999999999999863         32211                 011    23333333456  79999999


Q ss_pred             CCCH-HHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHH
Q 021156          141 GINS-DNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRV  181 (316)
Q Consensus       141 GIr~-e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~  181 (316)
                      ||++ +|+.+++.+||+.|-++|+++..   .|+.+.++.+.
T Consensus       260 GI~~~~da~~~l~aGA~~V~i~ta~~~~---g~~~~~~i~~~  298 (299)
T cd02940         260 GIESWEDAAEFLLLGASVVQVCTAVMNQ---GFTIVDDMCTG  298 (299)
T ss_pred             CCCCHHHHHHHHHcCCChheEceeeccc---CCcHHHHHhhh
Confidence            9984 99999999999999999999885   28888887653

DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.

>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family

Probab=97.06  E-value=0.0057  Score=56.72  Aligned_cols=89  Identities=19%  Similarity=0.152  Sum_probs=67.4

Q ss_pred             cCHHHHHHHHHHcC-CCcceEEEecCCc-ccHHHHHHHHHhC-CCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCC-
Q 021156           93 KSAAEFANLYKEDG-LTGGHAIMLGADP-LSKAAAIEALHAY-PGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNG-  168 (316)
Q Consensus        93 ~~p~e~a~~~~~~G-~~~l~lvDLda~~-~~~~~i~~~v~~~-~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~-  168 (316)
                      .+..+.++.....+ +|++.+-=...+. .+.+.+.+..+.. +.|+.+|||++.+.+.++++. ||-+++||.+.++| 
T Consensus       157 ~~~~e~a~~~~~~~~aDavivtG~~TG~~~d~~~l~~vr~~~~~~PvllggGvt~eNv~e~l~~-adGviVgS~~K~~G~  235 (257)
T TIGR00259       157 RDLESIALDTVERGLADAVILSGKTTGTEVDLELLKLAKETVKDTPVLAGSGVNLENVEELLSI-ADGVIVATTIKKDGV  235 (257)
T ss_pred             CCHHHHHHHHHHhcCCCEEEECcCCCCCCCCHHHHHHHHhccCCCeEEEECCCCHHHHHHHHhh-CCEEEECCCcccCCc
Confidence            35667888888777 8877665544333 3444444433323 589999999999999999987 99999999998777 


Q ss_pred             ---CCCHHHHHHHHHHh
Q 021156          169 ---QMDLERLKDLVRVV  182 (316)
Q Consensus       169 ---~~~~eli~ei~~~~  182 (316)
                         ..|++.++++.+..
T Consensus       236 ~~n~~D~~rV~~Fm~~v  252 (257)
T TIGR00259       236 FNNFVDQARVSQFVEKV  252 (257)
T ss_pred             cCCCcCHHHHHHHHHHH
Confidence               57899999988765

Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.

>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4

Probab=97.05  E-value=0.027  Score=50.21  Aligned_cols=159  Identities=25%  Similarity=0.369  Sum_probs=101.0

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHH-hCCCcEEEecCC-C-HHHHHHHHHcCCCEEEeCCeeecCCC
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALH-AYPGGLQVGGGI-N-SDNSLSYIEEGATHVIVTSYVFNNGQ  169 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~-~~~~pl~vGGGI-r-~e~~~~~l~~Gad~VVigt~~~~~~~  169 (316)
                      .+..++++.+.+.|++-+-+..   ..++..++++.++ +.+ -+.+|.|- . .++++++.++||+.+|-=..      
T Consensus        20 ~~a~~~~~al~~gGi~~iEiT~---~t~~a~~~I~~l~~~~p-~~~vGAGTV~~~e~a~~a~~aGA~FivSP~~------   89 (196)
T PF01081_consen   20 EDAVPIAEALIEGGIRAIEITL---RTPNALEAIEALRKEFP-DLLVGAGTVLTAEQAEAAIAAGAQFIVSPGF------   89 (196)
T ss_dssp             GGHHHHHHHHHHTT--EEEEET---TSTTHHHHHHHHHHHHT-TSEEEEES--SHHHHHHHHHHT-SEEEESS-------
T ss_pred             HHHHHHHHHHHHCCCCEEEEec---CCccHHHHHHHHHHHCC-CCeeEEEeccCHHHHHHHHHcCCCEEECCCC------
Confidence            4677899999988866444333   2234455555554 444 36677665 4 59999999999999875331      


Q ss_pred             CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHH
Q 021156          170 MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELV  249 (316)
Q Consensus       170 ~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli  249 (316)
                       +++.++... +++    ++.+-     |   +          .++ ..+..+.+.|++.+=+...+.-|   |  ...+
T Consensus        90 -~~~v~~~~~-~~~----i~~iP-----G---~----------~Tp-tEi~~A~~~G~~~vK~FPA~~~G---G--~~~i  139 (196)
T PF01081_consen   90 -DPEVIEYAR-EYG----IPYIP-----G---V----------MTP-TEIMQALEAGADIVKLFPAGALG---G--PSYI  139 (196)
T ss_dssp             --HHHHHHHH-HHT----SEEEE-----E---E----------SSH-HHHHHHHHTT-SEEEETTTTTTT---H--HHHH
T ss_pred             -CHHHHHHHH-HcC----CcccC-----C---c----------CCH-HHHHHHHHCCCCEEEEecchhcC---c--HHHH
Confidence             266665554 453    12221     1   0          123 34556778999988777765443   2  3578


Q ss_pred             HHHhh-cCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccC
Q 021156          250 ALLGK-YSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGG  296 (316)
Q Consensus       250 ~~l~~-~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g  296 (316)
                      +.++. ..++|++..|||.. +++.+.++.|  +.+|.+|+.+  +..
T Consensus       140 k~l~~p~p~~~~~ptGGV~~-~N~~~~l~ag--~~~vg~Gs~L--~~~  182 (196)
T PF01081_consen  140 KALRGPFPDLPFMPTGGVNP-DNLAEYLKAG--AVAVGGGSWL--FPK  182 (196)
T ss_dssp             HHHHTTTTT-EEEEBSS--T-TTHHHHHTST--TBSEEEESGG--GSH
T ss_pred             HHHhccCCCCeEEEcCCCCH-HHHHHHHhCC--CEEEEECchh--cCH
Confidence            88876 45799999999987 7999999998  8899999999  754

1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....

>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional

Probab=97.04  E-value=0.0046  Score=55.68  Aligned_cols=84  Identities=19%  Similarity=0.055  Sum_probs=57.3

Q ss_pred             CHHHHHHHHHHcCCCcceE--EEecCC-----cccHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeee
Q 021156           94 SAAEFANLYKEDGLTGGHA--IMLGAD-----PLSKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVF  165 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~l--vDLda~-----~~~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~  165 (316)
                      ++. .++...+.|++.+.+  ..+.+.     ......+.++.+.+++|+.++|||+ .++++++++.||+-|++||.+.
T Consensus       128 t~e-e~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~  206 (221)
T PRK01130        128 TLE-EGLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVGCPVIAEGRINTPEQAKKALELGAHAVVVGGAIT  206 (221)
T ss_pred             CHH-HHHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHCCCCEEEEchHhc
Confidence            454 557777889886533  123221     1223334444445689999999998 6999999999999999999987


Q ss_pred             cCCCCCHHHHHHHHHHh
Q 021156          166 NNGQMDLERLKDLVRVV  182 (316)
Q Consensus       166 ~~~~~~~eli~ei~~~~  182 (316)
                      +.    .+..+++.+.+
T Consensus       207 ~~----~~~~~~~~~~~  219 (221)
T PRK01130        207 RP----EEITKWFVDAL  219 (221)
T ss_pred             CC----HHHHHHHHHHh
Confidence            74    55555555544

>CHL00200 trpA tryptophan synthase alpha subunit; Provisional

Probab=97.02  E-value=0.0016  Score=60.57  Aligned_cols=74  Identities=11%  Similarity=-0.008  Sum_probs=52.1

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCCc-------ccHHHHHHHHH-hCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCe
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGADP-------LSKAAAIEALH-AYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSY  163 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~~-------~~~~~i~~~v~-~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~  163 (316)
                      +.|.+..+.+.+..-..+|++-..+..       ......++.++ ..+.|+.||+||+ .|+++++.+.|||-||+||+
T Consensus       154 tT~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSa  233 (263)
T CHL00200        154 TSSKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIILGFGISTSEQIKQIKGWNINGIVIGSA  233 (263)
T ss_pred             CCCHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHhcCCCEEEECHH
Confidence            345566666666543455666555431       12334455555 4689999999999 59999999999999999999


Q ss_pred             eec
Q 021156          164 VFN  166 (316)
Q Consensus       164 ~~~  166 (316)
                      +.+
T Consensus       234 lv~  236 (263)
T CHL00200        234 CVQ  236 (263)
T ss_pred             HHH
Confidence            853

>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed

Probab=97.02  E-value=0.063  Score=53.26  Aligned_cols=169  Identities=14%  Similarity=0.067  Sum_probs=108.1

Q ss_pred             HHHHHHHHcCCCcceEEEecCCccc----HHHHHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCH
Q 021156           97 EFANLYKEDGLTGGHAIMLGADPLS----KAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDL  172 (316)
Q Consensus        97 e~a~~~~~~G~~~l~lvDLda~~~~----~~~i~~~v~~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~  172 (316)
                      +.++...+.|++.+.+=+=+.....    -..+.+.++..+.++++-.     ..+-+++.||+-|=+|-.-..     .
T Consensus       221 ~~ve~aL~aGv~~VQLReK~ls~~el~~la~~l~~l~~~~gv~LiIND-----~~dlAl~~gAdGVHLGQeDL~-----~  290 (437)
T PRK12290        221 EWIERLLPLGINTVQLRIKDPQQADLEQQIIRAIALGREYNAQVFIND-----YWQLAIKHQAYGVHLGQEDLE-----E  290 (437)
T ss_pred             HHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCEEEEEC-----HHHHHHHcCCCEEEcChHHcc-----h
Confidence            5677777788877666654433211    1223344455677777764     577788899999988875443     2


Q ss_pred             HHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccc----cCCCCHHH
Q 021156          173 ERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGK----KLGIDDEL  248 (316)
Q Consensus       173 eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~----~~G~d~el  248 (316)
                         .+..+..|++ .++++.+.                   +. +.+.++.+.|++.+.+-.+-...+    ..+..++.
T Consensus       291 ---~~aR~ilg~~-~iIGvStH-------------------s~-eEl~~A~~~gaDYI~lGPIFpT~TK~~~~~p~Gl~~  346 (437)
T PRK12290        291 ---ANLAQLTDAG-IRLGLSTH-------------------GY-YELLRIVQIQPSYIALGHIFPTTTKQMPSKPQGLVR  346 (437)
T ss_pred             ---hhhhhhcCCC-CEEEEecC-------------------CH-HHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHH
Confidence               2233333433 34566652                   23 345677788999887644422222    23346777


Q ss_pred             HHHHhhcC---------CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156          249 VALLGKYS---------PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVA  305 (316)
Q Consensus       249 i~~l~~~~---------~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~  305 (316)
                      ++++++..         ++|+++-||| +.+++.++++.|  ++||.+=+|+  ..- -++++..+
T Consensus       347 L~~~~~l~~~~~~~~~~~iPVVAIGGI-~~~Ni~~vl~aG--a~GVAVVSAI--~~A-~DP~aa~~  406 (437)
T PRK12290        347 LALYQKLIDTIPYQGQTGFPTVAIGGI-DQSNAEQVWQCG--VSSLAVVRAI--TLA-EDPQLVIE  406 (437)
T ss_pred             HHHHHHHhhhccccccCCCCEEEECCc-CHHHHHHHHHcC--CCEEEEehHh--hcC-CCHHHHHH
Confidence            77665543         6999999999 779999999998  9999999999  643 34555544

>PRK08883 ribulose-phosphate 3-epimerase; Provisional

Probab=97.02  E-value=0.0026  Score=57.74  Aligned_cols=86  Identities=12%  Similarity=0.108  Sum_probs=54.4

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCC---cc----cHHHHHHHHHh-----CCCcEEEecCCCHHHHHHHHHcCCCEEEeC
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGAD---PL----SKAAAIEALHA-----YPGGLQVGGGINSDNSLSYIEEGATHVIVT  161 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~---~~----~~~~i~~~v~~-----~~~pl~vGGGIr~e~~~~~l~~Gad~VVig  161 (316)
                      .|++..+.+... .+.+-+.=.+.+   +.    ..+.+.+..+.     .++|++++|||+.+.+..+.++|||.+|+|
T Consensus       117 Tp~~~i~~~l~~-~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~~eni~~l~~aGAd~vVvG  195 (220)
T PRK08883        117 TPLHHLEYIMDK-VDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVKVDNIREIAEAGADMFVAG  195 (220)
T ss_pred             CCHHHHHHHHHh-CCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEEEEe
Confidence            566676666543 666666555533   11    12222222221     248999999999999999999999999999


Q ss_pred             CeeecCCCCCHHHHHHHHHH
Q 021156          162 SYVFNNGQMDLERLKDLVRV  181 (316)
Q Consensus       162 t~~~~~~~~~~eli~ei~~~  181 (316)
                      |+.++... ..+.++++.+.
T Consensus       196 SaIf~~~d-~~~~i~~l~~~  214 (220)
T PRK08883        196 SAIFGQPD-YKAVIDEMRAE  214 (220)
T ss_pred             HHHhCCCC-HHHHHHHHHHH
Confidence            99886421 12445555443

>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]

Probab=97.02  E-value=0.0064  Score=59.19  Aligned_cols=146  Identities=19%  Similarity=0.141  Sum_probs=94.2

Q ss_pred             HHHHHHcCCCEEEeCCee--------------ecC---C------CCCHHHHHHHHHHhcCce-EEEeeeeeecCCeeEE
Q 021156          147 SLSYIEEGATHVIVTSYV--------------FNN---G------QMDLERLKDLVRVVGKQR-LVLDLSCRKKDGKYAI  202 (316)
Q Consensus       147 ~~~~l~~Gad~VVigt~~--------------~~~---~------~~~~eli~ei~~~~G~~~-IvvslD~k~~~g~~~v  202 (316)
                      ++++.++|.|-|=|-.+-              ++|   |      ++..|.++.+.+++|.++ |.+-+...   . + -
T Consensus       155 A~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~---d-~-~  229 (363)
T COG1902         155 ARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPD---D-F-F  229 (363)
T ss_pred             HHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECcc---c-c-C
Confidence            556668999988663221              111   1      345688888888898776 33333321   0 0 0


Q ss_pred             EeCCcceecccCHHHHHHHHHHcC-CCEEEEeecCC--cccc----CCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHH
Q 021156          203 VTDRWQKFSDVYLDERVLDFLASY-ADEFLVHGVDV--EGKK----LGIDDELVALLGKYSPIPVTYAGGVTTMADLEKI  275 (316)
Q Consensus       203 ~~~gw~~~~~~~~~e~a~~~~~~G-a~~ilvtdi~~--dG~~----~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l  275 (316)
                      ...||..   -+..++++.+.+.| ++.+-+..-+.  .++.    .|+-.+..+.++..+.+|+|+.|+|.+++.+.++
T Consensus       230 ~~~g~~~---~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~pvi~~G~i~~~~~Ae~~  306 (363)
T COG1902         230 DGGGLTI---EEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVRIPVIAVGGINDPEQAEEI  306 (363)
T ss_pred             CCCCCCH---HHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHH
Confidence            0012221   14578899999999 68653322111  2221    2334455666777778999999999999999999


Q ss_pred             HHhCCCcCEEEEccchhhccCcccHHHH
Q 021156          276 KVAGIGRVDVTVGSALDIFGGNLAYKDV  303 (316)
Q Consensus       276 ~~~G~g~~gVivG~Al~~~~g~~~~~~~  303 (316)
                      ++.| .+|-|-+||++  ..+|--...+
T Consensus       307 l~~g-~aDlVa~gR~~--ladP~~~~k~  331 (363)
T COG1902         307 LASG-RADLVAMGRPF--LADPDLVLKA  331 (363)
T ss_pred             HHcC-CCCEEEechhh--hcCccHHHHH
Confidence            9998 68999999999  8887544444

>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]

Probab=97.00  E-value=0.17  Score=44.84  Aligned_cols=185  Identities=18%  Similarity=0.178  Sum_probs=115.0

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCc-cc---HHHHHHHHHh-CCCcEEEecCC---CHHH-HHHHHHcCCCEEEeCCee
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADP-LS---KAAAIEALHA-YPGGLQVGGGI---NSDN-SLSYIEEGATHVIVTSYV  164 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~-~~---~~~i~~~v~~-~~~pl~vGGGI---r~e~-~~~~l~~Gad~VVigt~~  164 (316)
                      +-.+-.+...++|++|+|+=-+|+.. +|   -+.+.+.+++ .+-+--.+--.   +.++ ++...++||+.+-+-.+.
T Consensus        18 nL~~e~~~~l~~GadwlHlDVMDg~FVpNiT~G~pvV~slR~~~~~~~ffD~HmMV~~Peq~V~~~a~agas~~tfH~E~   97 (224)
T KOG3111|consen   18 NLAAECKKMLDAGADWLHLDVMDGHFVPNITFGPPVVESLRKHTGADPFFDVHMMVENPEQWVDQMAKAGASLFTFHYEA   97 (224)
T ss_pred             HHHHHHHHHHHcCCCeEEEeeecccccCCcccchHHHHHHHhccCCCcceeEEEeecCHHHHHHHHHhcCcceEEEEEee
Confidence            34455666778999999999999863 21   1234455553 44433344433   3566 999999999999999988


Q ss_pred             ecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCC
Q 021156          165 FNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGI  244 (316)
Q Consensus       165 ~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~  244 (316)
                      .++    +..+-+-.++-|   .-+.+-++  -|            +   ..|.+..+.+ -++.+++..+.--=-.+-+
T Consensus        98 ~q~----~~~lv~~ir~~G---mk~G~alk--Pg------------T---~Ve~~~~~~~-~~D~vLvMtVePGFGGQkF  152 (224)
T KOG3111|consen   98 TQK----PAELVEKIREKG---MKVGLALK--PG------------T---PVEDLEPLAE-HVDMVLVMTVEPGFGGQKF  152 (224)
T ss_pred             ccC----HHHHHHHHHHcC---CeeeEEeC--CC------------C---cHHHHHHhhc-cccEEEEEEecCCCchhhh
Confidence            775    543333334333   34455444  33            1   2344444433 4788888887642122334


Q ss_pred             CHH---HHHHHhhc-CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHHh
Q 021156          245 DDE---LVALLGKY-SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       245 d~e---li~~l~~~-~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~~  309 (316)
                      -.+   -++.+++. .+.-+.+-||+.. +.+.++.++|  +..++.|+|.  | +.-+.++++...+.
T Consensus       153 me~mm~KV~~lR~kyp~l~ievDGGv~~-~ti~~~a~AG--AN~iVaGsav--f-~a~d~~~vi~~lr~  215 (224)
T KOG3111|consen  153 MEDMMPKVEWLREKYPNLDIEVDGGVGP-STIDKAAEAG--ANMIVAGSAV--F-GAADPSDVISLLRN  215 (224)
T ss_pred             HHHHHHHHHHHHHhCCCceEEecCCcCc-chHHHHHHcC--CCEEEeccee--e-cCCCHHHHHHHHHH
Confidence            334   45556644 4545558999865 6799999998  7889999999  6 33356666665543

>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD

Probab=97.00  E-value=0.0026  Score=62.76  Aligned_cols=73  Identities=23%  Similarity=0.151  Sum_probs=53.3

Q ss_pred             HHHHHHHHHcC-CCEEEEeecCCcccc-CCCCHHHHHHHhh---cC--------CCcEEEEeCCCCHHHHHHHHHhCCCc
Q 021156          216 DERVLDFLASY-ADEFLVHGVDVEGKK-LGIDDELVALLGK---YS--------PIPVTYAGGVTTMADLEKIKVAGIGR  282 (316)
Q Consensus       216 ~e~a~~~~~~G-a~~ilvtdi~~dG~~-~G~d~eli~~l~~---~~--------~iPVIasGGI~s~eDi~~l~~~G~g~  282 (316)
                      .+.++.+.+.| ++.|++. .+.-|+- ..+-+.++..+.+   .+        ++||+++|||.|.+++..++.+|  +
T Consensus       166 ~~eA~~A~~~g~aD~Ivvq-~EAGGH~g~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~tg~~vaAA~alG--A  242 (418)
T cd04742         166 EEQAELARRVPVADDITVE-ADSGGHTDNRPLSVLLPTIIRLRDELAARYGYRRPIRVGAAGGIGTPEAAAAAFALG--A  242 (418)
T ss_pred             HHHHHHHHhCCCCCEEEEc-ccCCCCCCCccHHhHHHHHHHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHcC--C
Confidence            34555666666 5888776 5665553 2234455555433   22        69999999999999999999999  9


Q ss_pred             CEEEEccch
Q 021156          283 VDVTVGSAL  291 (316)
Q Consensus       283 ~gVivG~Al  291 (316)
                      ++|.+|+.+
T Consensus       243 d~V~~GT~f  251 (418)
T cd04742         243 DFIVTGSIN  251 (418)
T ss_pred             cEEeeccHH
Confidence            999999987

NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative

Probab=96.99  E-value=0.0029  Score=57.83  Aligned_cols=74  Identities=14%  Similarity=0.100  Sum_probs=57.4

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCc--ccHHHHHHHHHhCC-CcEEEecCCCH-HHHHHHHHcCCCEEEeCCeeecC
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADP--LSKAAAIEALHAYP-GGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFNN  167 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~--~~~~~i~~~v~~~~-~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~~~  167 (316)
                      +..++|+...++|++++|+=......  .+...+.++.+.++ +|++.-|||++ +|+.+++++|||-|-+|+..+.+
T Consensus       149 ~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~VmvgR~~l~~  226 (231)
T TIGR00736       149 DELIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVSVARAILKG  226 (231)
T ss_pred             hHHHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEEEcHhhccC
Confidence            67789999999999999993222222  23444444444564 99999999985 99999999999999999988875

Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.

>PRK07709 fructose-bisphosphate aldolase; Provisional

Probab=96.96  E-value=0.024  Score=53.37  Aligned_cols=146  Identities=17%  Similarity=0.135  Sum_probs=97.0

Q ss_pred             CcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCccee---
Q 021156          134 GGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKF---  210 (316)
Q Consensus       134 ~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~---  210 (316)
                      +-+-.+=|-..+.+.+++++|.+.|.++...+.- +=|.+..+++++...+  .-+++-.-       +-.-|..+.   
T Consensus        80 V~lHLDHg~~~e~i~~ai~~GftSVM~DgS~lp~-eeNi~~Trevv~~Ah~--~gv~VEaE-------lG~igg~ed~~~  149 (285)
T PRK07709         80 VAIHLDHGSSFEKCKEAIDAGFTSVMIDASHHPF-EENVETTKKVVEYAHA--RNVSVEAE-------LGTVGGQEDDVI  149 (285)
T ss_pred             EEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCH-HHHHHHHHHHHHHHHH--cCCEEEEE-------EeccCCccCCcc
Confidence            3345566666799999999999999997655431 0025555555544311  11334321       111111111   


Q ss_pred             ---c-ccCHHHHHHHHHHcCCCEEEEeecCCccccCC---CCHHHHHHHhhcCCCcEEEEeCCCCH-HHHHHHHHhCCCc
Q 021156          211 ---S-DVYLDERVLDFLASYADEFLVHGVDVEGKKLG---IDDELVALLGKYSPIPVTYAGGVTTM-ADLEKIKVAGIGR  282 (316)
Q Consensus       211 ---~-~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G---~d~eli~~l~~~~~iPVIasGGI~s~-eDi~~l~~~G~g~  282 (316)
                         . --++.+..+...+.|++.+-+--=+.-|.+.|   .|+++++++.+.+++|+..-||-+.+ ++++++.+.|  +
T Consensus       150 ~~~~~yT~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~~iPLVLHGgSG~~~e~~~~ai~~G--i  227 (285)
T PRK07709        150 AEGVIYADPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFTGVPLVLHGGTGIPTADIEKAISLG--T  227 (285)
T ss_pred             cccccCCCHHHHHHHHHHhCCCEEEEeecccccCcCCCCccCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHcC--C
Confidence               0 12577767777778999875433355566655   49999999999999999999998877 7788899988  9


Q ss_pred             CEEEEccch
Q 021156          283 VDVTVGSAL  291 (316)
Q Consensus       283 ~gVivG~Al  291 (316)
                      ..+=|++.+
T Consensus       228 ~KiNi~T~l  236 (285)
T PRK07709        228 SKINVNTEN  236 (285)
T ss_pred             eEEEeChHH
Confidence            999999876

>PRK06801 hypothetical protein; Provisional

Probab=96.96  E-value=0.036  Score=52.25  Aligned_cols=153  Identities=13%  Similarity=0.155  Sum_probs=93.4

Q ss_pred             HhCCCcE--EEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHH---HHHhcCceEEEeeeeeecCCee-EEE
Q 021156          130 HAYPGGL--QVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDL---VRVVGKQRLVLDLSCRKKDGKY-AIV  203 (316)
Q Consensus       130 ~~~~~pl--~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei---~~~~G~~~IvvslD~k~~~g~~-~v~  203 (316)
                      ++..+|+  ..+=|-..+.++++++.|++.|-+....+.. +-|.+..+++   .+.+|- .+-.-+..-  +|.. -+.
T Consensus        71 ~~~~vpV~lHlDH~~~~e~i~~Ai~~GftSVm~D~S~l~~-eeNi~~t~~v~~~a~~~gv-~VE~ElG~v--gg~e~~v~  146 (286)
T PRK06801         71 ARHDIPVVLNLDHGLHFEAVVRALRLGFSSVMFDGSTLEY-EENVRQTREVVKMCHAVGV-SVEAELGAV--GGDEGGAL  146 (286)
T ss_pred             HHCCCCEEEECCCCCCHHHHHHHHHhCCcEEEEcCCCCCH-HHHHHHHHHHHHHHHHcCC-eEEeecCcc--cCCCCCcc
Confidence            3455554  4555556789999999999999996554431 0024444444   444541 111122211  1100 000


Q ss_pred             e-C-CcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCC---CCHHHHHHHhhcCCCcEEEEeC--CCCHHHHHHHH
Q 021156          204 T-D-RWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLG---IDDELVALLGKYSPIPVTYAGG--VTTMADLEKIK  276 (316)
Q Consensus       204 ~-~-gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G---~d~eli~~l~~~~~iPVIasGG--I~s~eDi~~l~  276 (316)
                      . . +..  ..-++.+..+...+.|++.+-+.-=+..|.+.+   .|++.++++++.+++|+.+-||  +. .+++.++.
T Consensus       147 ~~~~~~~--~~T~pe~a~~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~~~PLVlHGGSgi~-~e~~~~~i  223 (286)
T PRK06801        147 YGEADSA--KFTDPQLARDFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQTGLPLVLHGGSGIS-DADFRRAI  223 (286)
T ss_pred             cCCcccc--cCCCHHHHHHHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhcCCCEEEECCCCCC-HHHHHHHH
Confidence            0 0 111  111344444444488999876622244455544   4999999999988999999999  66 47899999


Q ss_pred             HhCCCcCEEEEccch
Q 021156          277 VAGIGRVDVTVGSAL  291 (316)
Q Consensus       277 ~~G~g~~gVivG~Al  291 (316)
                      +.|  +..+-|++++
T Consensus       224 ~~G--i~KINv~T~~  236 (286)
T PRK06801        224 ELG--IHKINFYTGM  236 (286)
T ss_pred             HcC--CcEEEehhHH
Confidence            998  9999999988

>PRK11197 lldD L-lactate dehydrogenase; Provisional

Probab=96.96  E-value=0.0061  Score=59.62  Aligned_cols=72  Identities=19%  Similarity=0.245  Sum_probs=56.0

Q ss_pred             HHHHHHHHHcCCCEEEEeecCCcccc-CC--CCHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccc
Q 021156          216 DERVLDFLASYADEFLVHGVDVEGKK-LG--IDDELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSA  290 (316)
Q Consensus       216 ~e~a~~~~~~Ga~~ilvtdi~~dG~~-~G--~d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~A  290 (316)
                      .+.++.+.+.|++.|++-.-  -|+. .+  +-.+.+.++.+.+  ++|||+.|||++-.|+.+++.+|  +++|++|+.
T Consensus       256 ~~dA~~a~~~Gvd~I~Vs~h--GGr~~d~~~~t~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALaLG--A~~V~iGr~  331 (381)
T PRK11197        256 PEDARDAVRFGADGIVVSNH--GGRQLDGVLSSARALPAIADAVKGDITILADSGIRNGLDVVRMIALG--ADTVLLGRA  331 (381)
T ss_pred             HHHHHHHHhCCCCEEEECCC--CCCCCCCcccHHHHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHHcC--cCceeEhHH
Confidence            47889999999999986431  2332 11  1356666665543  69999999999999999999999  999999998


Q ss_pred             h
Q 021156          291 L  291 (316)
Q Consensus       291 l  291 (316)
                      +
T Consensus       332 ~  332 (381)
T PRK11197        332 F  332 (381)
T ss_pred             H
Confidence            8

>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2

Probab=96.94  E-value=0.0011  Score=63.65  Aligned_cols=85  Identities=20%  Similarity=0.180  Sum_probs=62.9

Q ss_pred             CHHHHHHHHHHcCCCcceEEEec---------------CC---cccH---HHHHHHHH-hC--CCcEEEecCCCH-HHHH
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLG---------------AD---PLSK---AAAIEALH-AY--PGGLQVGGGINS-DNSL  148 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLd---------------a~---~~~~---~~i~~~v~-~~--~~pl~vGGGIr~-e~~~  148 (316)
                      +..++|+.+.++|++++.+..=-               +.   ....   ...+..++ .+  ++||+.-|||++ +|+.
T Consensus       217 ~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~  296 (327)
T cd04738         217 ELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAY  296 (327)
T ss_pred             HHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHH
Confidence            57789999999999999887510               00   1111   12233333 45  689999999984 9999


Q ss_pred             HHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHH
Q 021156          149 SYIEEGATHVIVTSYVFNNGQMDLERLKDLVRV  181 (316)
Q Consensus       149 ~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~  181 (316)
                      +++.+|||.|-++|.++.+   +|.++.++.+.
T Consensus       297 e~l~aGAd~V~vg~~~~~~---gP~~~~~i~~~  326 (327)
T cd04738         297 EKIRAGASLVQLYTGLVYE---GPGLVKRIKRE  326 (327)
T ss_pred             HHHHcCCCHHhccHHHHhh---CcHHHHHHHhc
Confidence            9999999999999999764   39999888754

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.

>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins

Probab=96.91  E-value=0.0038  Score=59.84  Aligned_cols=87  Identities=20%  Similarity=0.250  Sum_probs=62.5

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEe--------cCCc----------c---cHHHHHHHH-HhCCCcEEEecCCCH-HHHHH
Q 021156           93 KSAAEFANLYKEDGLTGGHAIML--------GADP----------L---SKAAAIEAL-HAYPGGLQVGGGINS-DNSLS  149 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDL--------da~~----------~---~~~~i~~~v-~~~~~pl~vGGGIr~-e~~~~  149 (316)
                      ++..++++.+.+.|++++.+..-        +...          .   .....+..+ +.+++||+..|||++ +|+.+
T Consensus       175 ~~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~ipIig~GGI~s~~Da~e  254 (325)
T cd04739         175 SALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKASLAASGGVHDAEDVVK  254 (325)
T ss_pred             cCHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCCCEEEECCCCCHHHHHH
Confidence            36778999999999999988552        1100          0   111222333 346899999999985 99999


Q ss_pred             HHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHh
Q 021156          150 YIEEGATHVIVTSYVFNNGQMDLERLKDLVRVV  182 (316)
Q Consensus       150 ~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~  182 (316)
                      .+.+||+.|-++|+++.+|   |+.+.++.+..
T Consensus       255 ~l~aGA~~Vqv~ta~~~~g---p~~~~~i~~~L  284 (325)
T cd04739         255 YLLAGADVVMTTSALLRHG---PDYIGTLLAGL  284 (325)
T ss_pred             HHHcCCCeeEEehhhhhcC---chHHHHHHHHH
Confidence            9999999999999998863   66666665544

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.

>PLN02979 glycolate oxidase

Probab=96.91  E-value=0.0064  Score=58.96  Aligned_cols=74  Identities=19%  Similarity=0.152  Sum_probs=56.4

Q ss_pred             HHHHHHHHHcCCCEEEEeecCCccccCCC-CHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          216 DERVLDFLASYADEFLVHGVDVEGKKLGI-DDELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       216 ~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~-d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      .+.++.+.+.|++.|++-.-.--+...++ -.+.+.++++.+  ++||+++|||++-.|+.+.+.+|  +++|.+|+.+
T Consensus       234 ~~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi~dGGIr~G~Di~KALALG--AdaV~iGrp~  310 (366)
T PLN02979        234 GEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG--ASGIFIGRPV  310 (366)
T ss_pred             HHHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcC--CCEEEEcHHH
Confidence            47889999999999976443211111222 356677776543  49999999999999999999999  8999999988

>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]

Probab=96.89  E-value=0.0035  Score=59.65  Aligned_cols=104  Identities=20%  Similarity=0.182  Sum_probs=72.1

Q ss_pred             ceEEEeeeeeecCCeeEEEeCCcc----eecc-------cCHHHHHHHHHHcCCCEEEEeecCC--cccc-CCCCHHHHH
Q 021156          185 QRLVLDLSCRKKDGKYAIVTDRWQ----KFSD-------VYLDERVLDFLASYADEFLVHGVDV--EGKK-LGIDDELVA  250 (316)
Q Consensus       185 ~~IvvslD~k~~~g~~~v~~~gw~----~~~~-------~~~~e~a~~~~~~Ga~~ilvtdi~~--dG~~-~G~d~eli~  250 (316)
                      .||++++|+|.++..-.|.++|-+    +.++       -.+.++++++.+.|++++.+..|+.  |=-+ .-|-++.++
T Consensus       230 kRiIACLDVRtND~GDLVVTKGDQYDVREkS~g~eVRNLGKPV~Laq~Yyq~GADEv~FLNITsFRdcPl~D~PMlqVL~  309 (541)
T KOG0623|consen  230 KRIIACLDVRTNDKGDLVVTKGDQYDVREKSNGNEVRNLGKPVDLAQQYYQDGADEVSFLNITSFRDCPLGDLPMLQVLR  309 (541)
T ss_pred             hhheeeeeeeccCCCceEEecCcccchhhccCchhhhccCChHHHHHHHHhcCCceeEEEeeccccCCCcccChHHHHHH
Confidence            689999999986432366666653    1111       1588999999999999998877753  2111 223455566


Q ss_pred             HHhhcCCCcEEEEeCCCCHHHH-----------HHHHHhCCCcCEEEEccc
Q 021156          251 LLGKYSPIPVTYAGGVTTMADL-----------EKIKVAGIGRVDVTVGSA  290 (316)
Q Consensus       251 ~l~~~~~iPVIasGGI~s~eDi-----------~~l~~~G~g~~gVivG~A  290 (316)
                      +.++.+-+|+.++|||++..|.           ...++.|  ++.|.||+-
T Consensus       310 qaaktVFVPLTVGGGIrD~~D~dGt~~palEVA~~YFRSG--ADKvSIGsD  358 (541)
T KOG0623|consen  310 QAAKTVFVPLTVGGGIRDFTDADGTYYPALEVAAEYFRSG--ADKVSIGSD  358 (541)
T ss_pred             HhhceEEEEEeecCcccccccCCCcCchhHHHHHHHHhcC--Cceeeechh
Confidence            6666677999999999987653           3445556  899999973

>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=96.89  E-value=0.002  Score=60.32  Aligned_cols=84  Identities=19%  Similarity=0.225  Sum_probs=62.0

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecC---------------C------ccc---HHHHHHHH-HhC--CCcEEEecCCC-HH
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGA---------------D------PLS---KAAAIEAL-HAY--PGGLQVGGGIN-SD  145 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda---------------~------~~~---~~~i~~~v-~~~--~~pl~vGGGIr-~e  145 (316)
                      +..++++.+.++|++.+.+..-..               .      ...   ....++.+ +.+  ++|++..|||+ .+
T Consensus       177 ~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~~  256 (289)
T cd02810         177 DIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSGE  256 (289)
T ss_pred             HHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCHH
Confidence            567889999999999998853210               0      000   11223333 346  79999999998 59


Q ss_pred             HHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHH
Q 021156          146 NSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVR  180 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~  180 (316)
                      ++.+++.+|||.|-+|+.++.+|   |+++.++.+
T Consensus       257 da~~~l~~GAd~V~vg~a~~~~G---P~~~~~i~~  288 (289)
T cd02810         257 DVLEMLMAGASAVQVATALMWDG---PDVIRKIKK  288 (289)
T ss_pred             HHHHHHHcCccHheEcHHHHhcC---ccHHHHHhc
Confidence            99999999999999999999863   888888764

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of

>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]

Probab=96.89  E-value=0.017  Score=51.81  Aligned_cols=175  Identities=19%  Similarity=0.167  Sum_probs=105.8

Q ss_pred             ccCHHHHHHHHHHcCCCcceEEEec----CCcccHHHHHHHHH-hCCCcEEEecC-C-CHHHHHHHHHcCCCEEEeCCee
Q 021156           92 DKSAAEFANLYKEDGLTGGHAIMLG----ADPLSKAAAIEALH-AYPGGLQVGGG-I-NSDNSLSYIEEGATHVIVTSYV  164 (316)
Q Consensus        92 ~~~p~e~a~~~~~~G~~~l~lvDLd----a~~~~~~~i~~~v~-~~~~pl~vGGG-I-r~e~~~~~l~~Gad~VVigt~~  164 (316)
                      +-+|.+.|..|++.|+.-+.+.-=+    +.-.+...+.+++. +++-|+..--- | ..-++...--.|||.|.+=.+.
T Consensus        90 d~~~ae~A~~Yak~GAs~iSVLTe~k~FkGsledL~~irk~~~~k~p~~~lL~KeFivd~~QI~~aR~~GADaVLLIvam  169 (289)
T KOG4201|consen   90 DANAAEQALAYAKGGASCISVLTEPKWFKGSLEDLVAIRKIAGVKCPPKCLLRKEFIVDPYQIYEARLKGADAVLLIVAM  169 (289)
T ss_pred             ccCHHHHHHHHHhcCceeeeeecCchhhcccHHHHHHHHHHhcCcCChHhHhHHHHccCHHHHHHHHhcCCceeehHHHH
Confidence            3589999999999997755543221    11122222222221 12212111100 0 1245666667899998776655


Q ss_pred             ecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCC
Q 021156          165 FNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGI  244 (316)
Q Consensus       165 ~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~  244 (316)
                      +.+  ...+.+-++++..|-+.+   +.                    ++..+..++..+.|+.-+-++.++..-  -..
T Consensus       170 Ls~--~~lk~l~k~~K~L~me~L---VE--------------------Vn~~eEm~raleiGakvvGvNNRnL~s--FeV  222 (289)
T KOG4201|consen  170 LSD--LLLKELYKISKDLGMEPL---VE--------------------VNDEEEMQRALEIGAKVVGVNNRNLHS--FEV  222 (289)
T ss_pred             cCh--HHHHHHHHHHHHcCCcce---ee--------------------eccHHHHHHHHHhCcEEEeecCCccce--eee
Confidence            554  013444455555542221   11                    122456667777899977777766541  234


Q ss_pred             CHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCc
Q 021156          245 DDELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGN  297 (316)
Q Consensus       245 d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~  297 (316)
                      |+...+++.+-.  ++-+++-.|+.|++|+....++|  +.+|.||-++  ....
T Consensus       223 DlstTskL~E~i~kDvilva~SGi~tpdDia~~q~~G--V~avLVGEsl--mk~s  273 (289)
T KOG4201|consen  223 DLSTTSKLLEGIPKDVILVALSGIFTPDDIAKYQKAG--VKAVLVGESL--MKQS  273 (289)
T ss_pred             chhhHHHHHhhCccceEEEeccCCCCHHHHHHHHHcC--ceEEEecHHH--Hhcc
Confidence            777777877653  45577888999999999999998  9999999999  7543

>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS)

Probab=96.87  E-value=0.0058  Score=53.90  Aligned_cols=74  Identities=19%  Similarity=0.126  Sum_probs=51.3

Q ss_pred             ccCHHHHHHHHHHcCCCcceEEEec--CC----cccHHHHHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeee
Q 021156           92 DKSAAEFANLYKEDGLTGGHAIMLG--AD----PLSKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVF  165 (316)
Q Consensus        92 ~~~p~e~a~~~~~~G~~~l~lvDLd--a~----~~~~~~i~~~v~~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~  165 (316)
                      ..+|.+..+ ....|++.+.+ ...  +.    ....+.+.+..+..++|++++|||+.+++..++++||+.+++||..+
T Consensus       113 ~~t~~e~~~-~~~~~~d~v~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~GGI~~~~i~~~~~~Gad~vvvGsai~  190 (202)
T cd04726         113 VEDPEKRAK-LLKLGVDIVIL-HRGIDAQAAGGWWPEDDLKKVKKLLGVKVAVAGGITPDTLPEFKKAGADIVIVGRAIT  190 (202)
T ss_pred             CCCHHHHHH-HHHCCCCEEEE-cCcccccccCCCCCHHHHHHHHhhcCCCEEEECCcCHHHHHHHHhcCCCEEEEeehhc
Confidence            357888776 55567775444 221  11    11233333333336799999999999999999999999999999988


Q ss_pred             cC
Q 021156          166 NN  167 (316)
Q Consensus       166 ~~  167 (316)
                      +.
T Consensus       191 ~~  192 (202)
T cd04726         191 GA  192 (202)
T ss_pred             CC
Confidence            64

KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.

>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional

Probab=96.82  E-value=0.096  Score=55.83  Aligned_cols=163  Identities=17%  Similarity=0.084  Sum_probs=102.7

Q ss_pred             HHHHHHHHHHcCCCcceEEEecCCccc----HHHHHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCC
Q 021156           95 AAEFANLYKEDGLTGGHAIMLGADPLS----KAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQM  170 (316)
Q Consensus        95 p~e~a~~~~~~G~~~l~lvDLda~~~~----~~~i~~~v~~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~  170 (316)
                      ..+..+...+.|+..+++=+=+.....    -..+.+.+++.++++++-.     +++-+++.|+| |=+|.....    
T Consensus        21 ~~~~l~~~l~~g~~~iqlR~K~~~~~~~~~~a~~l~~l~~~~~~~liind-----~~~la~~~~~d-VHlg~~dl~----   90 (755)
T PRK09517         21 VAGIVDSAISGGVSVVQLRDKNAGVEDVRAAAKELKELCDARGVALVVND-----RLDVAVELGLH-VHIGQGDTP----   90 (755)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCeEEEeC-----hHHHHHHcCCC-eecCCCcCC----
Confidence            345555556678877776544433211    1223334445567788765     57777889999 657754322    


Q ss_pred             CHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHH---HHHc---CCCEEEEeecCCcccc---
Q 021156          171 DLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLD---FLAS---YADEFLVHGVDVEGKK---  241 (316)
Q Consensus       171 ~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~---~~~~---Ga~~ilvtdi~~dG~~---  241 (316)
                       +   .+..+..|++. ++++.+.                   +..+..+.   ....   |++.+.+-.+-...+.   
T Consensus        91 -~---~~~r~~~~~~~-~iG~S~h-------------------~~~e~~~~~~~~~~~g~~gaDYi~~Gpvf~T~tK~~~  146 (755)
T PRK09517         91 -Y---TQARRLLPAHL-ELGLTIE-------------------TLDQLEAVIAQCAETGVALPDVIGIGPVASTATKPDA  146 (755)
T ss_pred             -H---HHHHHhcCCCC-EEEEeCC-------------------CHHHHHHHHhhhccCCCCCCCEEEECCccccCCCCCC
Confidence             3   33444455433 4666653                   12232211   1223   4898876555333333   


Q ss_pred             -CCCCHHHHHHHhhcCC---CcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccC
Q 021156          242 -LGIDDELVALLGKYSP---IPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGG  296 (316)
Q Consensus       242 -~G~d~eli~~l~~~~~---iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g  296 (316)
                       ....++.++++++.+.   +||++-||| +.+++.++.+.|  ++|+.+-+++  +.-
T Consensus       147 ~~~lG~~~l~~~~~~~~~~~iPv~AiGGI-~~~~~~~~~~~G--a~giAvisai--~~a  200 (755)
T PRK09517        147 PPALGVDGIAEIAAVAQDHGIASVAIGGV-GLRNAAELAATG--IDGLCVVSAI--MAA  200 (755)
T ss_pred             CCCCCHHHHHHHHHhcCcCCCCEEEECCC-CHHHHHHHHHcC--CCEEEEehHh--hCC
Confidence             3348899999988776   999999999 789999999998  9999999999  743

>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]

Probab=96.82  E-value=0.004  Score=56.48  Aligned_cols=65  Identities=12%  Similarity=0.169  Sum_probs=51.7

Q ss_pred             cCCccccCCC-CHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHH
Q 021156          235 VDVEGKKLGI-DDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHA  308 (316)
Q Consensus       235 i~~dG~~~G~-d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~  308 (316)
                      +...|+...| ..|.++++.+..  |+|++|||+|.|..+++.++|  +|-+++|..+  |+.+   +.+.+...
T Consensus       170 lEagsga~~Pv~~e~v~~v~~~~--~LivGGGIrs~E~A~~~a~ag--AD~IVtG~ii--ee~~---~~~~~~v~  235 (240)
T COG1646         170 LEAGSGAGDPVPVEMVSRVLSDT--PLIVGGGIRSPEQAREMAEAG--ADTIVTGTII--EEDP---DKALETVE  235 (240)
T ss_pred             EEecCCCCCCcCHHHHHHhhccc--eEEEcCCcCCHHHHHHHHHcC--CCEEEECcee--ecCH---HHHHHHHH
Confidence            3444666555 888888887655  999999999999999999998  8999999999  9876   44444433

>PRK08610 fructose-bisphosphate aldolase; Reviewed

Probab=96.79  E-value=0.038  Score=52.07  Aligned_cols=146  Identities=15%  Similarity=0.109  Sum_probs=95.9

Q ss_pred             CcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCccee---
Q 021156          134 GGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKF---  210 (316)
Q Consensus       134 ~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~---  210 (316)
                      +-+-.+=|-..+.+++++++|.+.|.++...+.- +=|.+..+++++...  ..-+++-.-       +-.-|..+.   
T Consensus        80 V~lHLDHg~~~e~i~~ai~~GftSVM~DgS~l~~-eeNi~~T~~vve~Ah--~~gv~VEaE-------lG~vgg~ed~~~  149 (286)
T PRK08610         80 VAIHLDHGSSFEKCKEAIDAGFTSVMIDASHSPF-EENVATTKKVVEYAH--EKGVSVEAE-------LGTVGGQEDDVV  149 (286)
T ss_pred             EEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCH-HHHHHHHHHHHHHHH--HcCCEEEEE-------EeccCCccCCCC
Confidence            3345555666799999999999999997655431 002455555554431  111344331       111111110   


Q ss_pred             -c---ccCHHHHHHHHHHcCCCEEEEeecCCccccCC---CCHHHHHHHhhcCCCcEEEEeCCCCH-HHHHHHHHhCCCc
Q 021156          211 -S---DVYLDERVLDFLASYADEFLVHGVDVEGKKLG---IDDELVALLGKYSPIPVTYAGGVTTM-ADLEKIKVAGIGR  282 (316)
Q Consensus       211 -~---~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G---~d~eli~~l~~~~~iPVIasGGI~s~-eDi~~l~~~G~g~  282 (316)
                       .   --++.+..+...+-|++.+-+--=+.-|.+.|   .|++.++++.+.+++|+..-||=+.+ ++++++.+.|  +
T Consensus       150 ~~~~~yT~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~~G--I  227 (286)
T PRK08610        150 ADGIIYADPKECQELVEKTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLSTGLPLVLHGGTGIPTKDIQKAIPFG--T  227 (286)
T ss_pred             CcccccCCHHHHHHHHHHHCCCEEEeeccccccccCCCCCCCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHCC--C
Confidence             0   12576666666678999775433355566655   49999999999899999999998887 6778888888  9


Q ss_pred             CEEEEccch
Q 021156          283 VDVTVGSAL  291 (316)
Q Consensus       283 ~gVivG~Al  291 (316)
                      ..+=|++.+
T Consensus       228 ~KiNi~T~l  236 (286)
T PRK08610        228 AKINVNTEN  236 (286)
T ss_pred             eEEEeccHH
Confidence            999999877

>PRK13111 trpA tryptophan synthase subunit alpha; Provisional

Probab=96.79  E-value=0.0039  Score=57.94  Aligned_cols=74  Identities=18%  Similarity=0.065  Sum_probs=54.5

Q ss_pred             ccCHHHHHHHHHHcCCCcceEEEecCC-------cccHHHHHHHHHh-CCCcEEEecCCCH-HHHHHHHHcCCCEEEeCC
Q 021156           92 DKSAAEFANLYKEDGLTGGHAIMLGAD-------PLSKAAAIEALHA-YPGGLQVGGGINS-DNSLSYIEEGATHVIVTS  162 (316)
Q Consensus        92 ~~~p~e~a~~~~~~G~~~l~lvDLda~-------~~~~~~i~~~v~~-~~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt  162 (316)
                      ...|.+.++..++..-..+|++-+-+.       .......++.+++ .+.|+.+|+||++ ++++++.+. ||-||+||
T Consensus       151 p~t~~eri~~i~~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~~-ADGviVGS  229 (258)
T PRK13111        151 PTTTDERLKKIASHASGFVYYVSRAGVTGARSADAADLAELVARLKAHTDLPVAVGFGISTPEQAAAIAAV-ADGVIVGS  229 (258)
T ss_pred             CCCCHHHHHHHHHhCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcCCCcEEEEcccCCHHHHHHHHHh-CCEEEEcH
Confidence            345667777777776666777766542       1234445566664 6899999999985 999999985 99999999


Q ss_pred             eeec
Q 021156          163 YVFN  166 (316)
Q Consensus       163 ~~~~  166 (316)
                      ++.+
T Consensus       230 aiv~  233 (258)
T PRK13111        230 ALVK  233 (258)
T ss_pred             HHHH
Confidence            9865

>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage

Probab=96.77  E-value=0.04  Score=50.63  Aligned_cols=176  Identities=17%  Similarity=0.162  Sum_probs=106.6

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCC---------cccHHHHHHHH----HhCCCcEEEecCC---C---H-HHHHHHHHc
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGAD---------PLSKAAAIEAL----HAYPGGLQVGGGI---N---S-DNSLSYIEE  153 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~---------~~~~~~i~~~v----~~~~~pl~vGGGI---r---~-e~~~~~l~~  153 (316)
                      |+. .|+..+++|++-+++-+.-..         .....++...+    +.+.+|+++++-.   .   . +.++++.++
T Consensus        18 D~~-sA~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~   96 (243)
T cd00377          18 DAL-SARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAVDLPVIADADTGYGNALNVARTVRELEEA   96 (243)
T ss_pred             CHH-HHHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHc
Confidence            676 788888889887777665411         11334443333    4567899887655   3   2 458888899


Q ss_pred             CCCEEEeCCeee-cC-----C--CCCH-H---HHHHHHHHhcC--c-eEEEeeeeeecCCeeEEEeCCcceecccCHHHH
Q 021156          154 GATHVIVTSYVF-NN-----G--QMDL-E---RLKDLVRVVGK--Q-RLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDER  218 (316)
Q Consensus       154 Gad~VVigt~~~-~~-----~--~~~~-e---li~ei~~~~G~--~-~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~  218 (316)
                      |++-|.|--... ++     +  -+++ +   .++.+.+....  + -|++-.|..      .+...+.     -+.++.
T Consensus        97 G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~------~~~~~~~-----~eai~R  165 (243)
T cd00377          97 GAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDAL------LAGEEGL-----DEAIER  165 (243)
T ss_pred             CCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCch------hccCCCH-----HHHHHH
Confidence            999999911111 00     0  0122 2   33333333321  1 122222322      0100111     247889


Q ss_pred             HHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCC-HHHHHHHHHhCCCcCEEEEccch
Q 021156          219 VLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTT-MADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       219 a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s-~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      ++.+.+.|++.+.++...        +.+.++++.+..+.|+.+.-.-.. .-.+.++.++|  +.-++.|..+
T Consensus       166 a~ay~~AGAD~v~v~~~~--------~~~~~~~~~~~~~~Pl~~~~~~~~~~~~~~~l~~lG--~~~v~~~~~~  229 (243)
T cd00377         166 AKAYAEAGADGIFVEGLK--------DPEEIRAFAEAPDVPLNVNMTPGGNLLTVAELAELG--VRRVSYGLAL  229 (243)
T ss_pred             HHHHHHcCCCEEEeCCCC--------CHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHCC--CeEEEEChHH
Confidence            999999999999877654        678999999888899877632211 13577777888  8889999877

Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to

>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed

Probab=96.75  E-value=0.077  Score=50.03  Aligned_cols=154  Identities=14%  Similarity=0.071  Sum_probs=98.1

Q ss_pred             HHhCCCc--EEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEe-C
Q 021156          129 LHAYPGG--LQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVT-D  205 (316)
Q Consensus       129 v~~~~~p--l~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~-~  205 (316)
                      .++..+|  +..+=|-..+.+++++++|.+.|.++...+.- +-|.+..+++++...+  .-+++-.-.  |  .|.. .
T Consensus        70 a~~~~VPValHLDHg~~~e~i~~ai~~GFtSVM~DgS~lp~-eeNi~~T~evv~~Ah~--~gv~VEaEl--G--~igg~e  142 (286)
T PRK12738         70 STTYNMPLALHLDHHESLDDIRRKVHAGVRSAMIDGSHFPF-AENVKLVKSVVDFCHS--QDCSVEAEL--G--RLGGVE  142 (286)
T ss_pred             HHHCCCCEEEECCCCCCHHHHHHHHHcCCCeEeecCCCCCH-HHHHHHHHHHHHHHHH--cCCeEEEEE--E--eeCCcc
Confidence            3444455  55666667799999999999999997665532 0135566666554321  113333210  1  1210 0


Q ss_pred             Cc----c-eecccCHHHHHHHHHHcCCCEEEEeecCCccccCC---CCHHHHHHHhhcCCCcEEEEeCCCCH-HHHHHHH
Q 021156          206 RW----Q-KFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLG---IDDELVALLGKYSPIPVTYAGGVTTM-ADLEKIK  276 (316)
Q Consensus       206 gw----~-~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G---~d~eli~~l~~~~~iPVIasGGI~s~-eDi~~l~  276 (316)
                      +.    . +..--++.+..+...+.|+|.+-+.-=+.-|.+.+   .|+++++++.+.+++|+..-||=+.+ ++++++.
T Consensus       143 d~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~~vPLVLHGgSG~~~e~~~kai  222 (286)
T PRK12738        143 DDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTI  222 (286)
T ss_pred             CCcccccchhcCCCHHHHHHHHHHhCCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHH
Confidence            10    0 00012576666677778999875433345566644   49999999999999999998887665 5677788


Q ss_pred             HhCCCcCEEEEccch
Q 021156          277 VAGIGRVDVTVGSAL  291 (316)
Q Consensus       277 ~~G~g~~gVivG~Al  291 (316)
                      +.|  +..+=|++.+
T Consensus       223 ~~G--I~KiNi~T~l  235 (286)
T PRK12738        223 ELG--VTKVNVATEL  235 (286)
T ss_pred             HcC--CeEEEeCcHH
Confidence            888  9999999877

>TIGR02814 pfaD_fam PfaD family protein

Probab=96.73  E-value=0.0063  Score=60.56  Aligned_cols=72  Identities=24%  Similarity=0.124  Sum_probs=52.8

Q ss_pred             HHHHHHHHcC-CCEEEEeecCCcccc-CCCCHHHHHHHh---hcC--------CCcEEEEeCCCCHHHHHHHHHhCCCcC
Q 021156          217 ERVLDFLASY-ADEFLVHGVDVEGKK-LGIDDELVALLG---KYS--------PIPVTYAGGVTTMADLEKIKVAGIGRV  283 (316)
Q Consensus       217 e~a~~~~~~G-a~~ilvtdi~~dG~~-~G~d~eli~~l~---~~~--------~iPVIasGGI~s~eDi~~l~~~G~g~~  283 (316)
                      +.+..+.+.| ++.|++. .+.-|+- ..+-+.++..+.   +.+        ++||+++|||.|.+++..++.+|  ++
T Consensus       172 eEA~~a~~~g~aD~Ivve-~EAGGHtg~~~~~~Llp~i~~lrd~v~~~~~y~~~VpViAAGGI~t~~~vaAAlaLG--Ad  248 (444)
T TIGR02814       172 EEAELARRVPVADDICVE-ADSGGHTDNRPLVVLLPAIIRLRDTLMRRYGYRKPIRVGAAGGIGTPEAAAAAFMLG--AD  248 (444)
T ss_pred             HHHHHHHhCCCCcEEEEe-ccCCCCCCCCcHHHHHHHHHHHHHHHhhcccCCCCceEEEeCCCCCHHHHHHHHHcC--Cc
Confidence            3445555666 5777664 6665553 223556666663   333        78999999999999999999999  99


Q ss_pred             EEEEccch
Q 021156          284 DVTVGSAL  291 (316)
Q Consensus       284 gVivG~Al  291 (316)
                      +|.+|+.+
T Consensus       249 gV~~GT~f  256 (444)
T TIGR02814       249 FIVTGSVN  256 (444)
T ss_pred             EEEeccHH
Confidence            99999987

The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.

>PLN02334 ribulose-phosphate 3-epimerase

Probab=96.71  E-value=0.0089  Score=54.27  Aligned_cols=87  Identities=21%  Similarity=0.218  Sum_probs=59.5

Q ss_pred             CHHHHHHHHHHcC-CCcceEEEecCC--cc-cHHH---HHHHHHh--CCCcEEEecCCCHHHHHHHHHcCCCEEEeCCee
Q 021156           94 SAAEFANLYKEDG-LTGGHAIMLGAD--PL-SKAA---AIEALHA--YPGGLQVGGGINSDNSLSYIEEGATHVIVTSYV  164 (316)
Q Consensus        94 ~p~e~a~~~~~~G-~~~l~lvDLda~--~~-~~~~---i~~~v~~--~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~  164 (316)
                      +|.+.++.+...| ++.+-+-.+..+  +. -.+.   .++.+++  .+.|+.+.|||+.+++..+.++||+.+++||+.
T Consensus       126 t~~~~~~~~~~~~~~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~~~~~I~a~GGI~~e~i~~l~~aGad~vvvgsai  205 (229)
T PLN02334        126 TPVEAVEPVVEKGLVDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKYPELDIEVDGGVGPSTIDKAAEAGANVIVAGSAV  205 (229)
T ss_pred             CCHHHHHHHHhccCCCEEEEEEEecCCCccccCHHHHHHHHHHHHhCCCCcEEEeCCCCHHHHHHHHHcCCCEEEEChHH
Confidence            5788888777664 887777666643  11 1111   1222332  357999999999999999999999999999998


Q ss_pred             ecCCCCCH-HHHHHHHHHh
Q 021156          165 FNNGQMDL-ERLKDLVRVV  182 (316)
Q Consensus       165 ~~~~~~~~-eli~ei~~~~  182 (316)
                      ++..  +| +.++++.+.+
T Consensus       206 ~~~~--d~~~~~~~l~~~~  222 (229)
T PLN02334        206 FGAP--DYAEVISGLRASV  222 (229)
T ss_pred             hCCC--CHHHHHHHHHHHH
Confidence            8642  23 4555555544

>PRK05286 dihydroorotate dehydrogenase 2; Reviewed

Probab=96.71  E-value=0.0013  Score=63.59  Aligned_cols=86  Identities=23%  Similarity=0.258  Sum_probs=63.3

Q ss_pred             CHHHHHHHHHHcCCCcceEEEe-------cC--------C---cc---cHHHHHHHH-HhC--CCcEEEecCCCH-HHHH
Q 021156           94 SAAEFANLYKEDGLTGGHAIML-------GA--------D---PL---SKAAAIEAL-HAY--PGGLQVGGGINS-DNSL  148 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDL-------da--------~---~~---~~~~i~~~v-~~~--~~pl~vGGGIr~-e~~~  148 (316)
                      +..++|+.+.++|++++.+..=       ..        .   ..   .....+..+ +.+  ++||+.-|||++ +|+.
T Consensus       226 ~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~  305 (344)
T PRK05286        226 ELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAY  305 (344)
T ss_pred             HHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHH
Confidence            4778999999999999999862       10        0   00   111122333 345  689999999985 9999


Q ss_pred             HHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHh
Q 021156          149 SYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVV  182 (316)
Q Consensus       149 ~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~  182 (316)
                      +++.+||+.|-++|.++.+   +|.++.++.+.+
T Consensus       306 e~l~aGAd~V~v~~~~~~~---gP~~~~~i~~~L  336 (344)
T PRK05286        306 EKIRAGASLVQIYSGLIYE---GPGLVKEIVRGL  336 (344)
T ss_pred             HHHHcCCCHHHHHHHHHHh---CchHHHHHHHHH
Confidence            9999999999999999753   288888887654

>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA)

Probab=96.71  E-value=0.0051  Score=56.47  Aligned_cols=73  Identities=16%  Similarity=0.018  Sum_probs=52.8

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCCc-------ccHHHHHHHHHh-CCCcEEEecCCCH-HHHHHHHHcCCCEEEeCCe
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGADP-------LSKAAAIEALHA-YPGGLQVGGGINS-DNSLSYIEEGATHVIVTSY  163 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~~-------~~~~~i~~~v~~-~~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~  163 (316)
                      ..|.+..+.+.+...+.++++-..+..       .+....++.+++ .+.|+.+||||+. ++++++.++ ||.+|+||+
T Consensus       139 ~T~~~~i~~i~~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~~~pI~vggGI~~~e~~~~~~~~-ADgvVvGSa  217 (242)
T cd04724         139 TTPDERIKKIAELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKYTDLPIAVGFGISTPEQAAEVAKY-ADGVIVGSA  217 (242)
T ss_pred             CCCHHHHHHHHhhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhcCCCcEEEEccCCCHHHHHHHHcc-CCEEEECHH
Confidence            456677777777556666777766431       122233444443 5799999999994 899999999 999999998


Q ss_pred             eec
Q 021156          164 VFN  166 (316)
Q Consensus       164 ~~~  166 (316)
                      +++
T Consensus       218 iv~  220 (242)
T cd04724         218 LVK  220 (242)
T ss_pred             HHH
Confidence            875

TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.

>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]

Probab=96.70  E-value=0.023  Score=51.75  Aligned_cols=88  Identities=25%  Similarity=0.237  Sum_probs=69.8

Q ss_pred             CHHHHHHHHHHcC-CCcceEEEecCC-cccHHHHHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCC---
Q 021156           94 SAAEFANLYKEDG-LTGGHAIMLGAD-PLSKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNG---  168 (316)
Q Consensus        94 ~p~e~a~~~~~~G-~~~l~lvDLda~-~~~~~~i~~~v~~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~---  168 (316)
                      +-.+.++.+.+.| ++.+.+.=.-.+ +.+.+++..+.+..+.|+.+|-|++.+.+..+++. ||-+|+||.+-++|   
T Consensus       164 ~~~~~v~dtver~~aDaVI~tG~~TG~~~d~~el~~a~~~~~~pvlvGSGv~~eN~~~~l~~-adG~IvgT~lK~~G~~~  242 (263)
T COG0434         164 SLEEAVKDTVERGLADAVIVTGSRTGSPPDLEELKLAKEAVDTPVLVGSGVNPENIEELLKI-ADGVIVGTSLKKGGVTW  242 (263)
T ss_pred             CHHHHHHHHHHccCCCEEEEecccCCCCCCHHHHHHHHhccCCCEEEecCCCHHHHHHHHHH-cCceEEEEEEccCCEec
Confidence            4557777766665 887766555433 45677776666678899999999999999999998 99999999998887   


Q ss_pred             -CCCHHHHHHHHHHh
Q 021156          169 -QMDLERLKDLVRVV  182 (316)
Q Consensus       169 -~~~~eli~ei~~~~  182 (316)
                       .++++.+.++.+..
T Consensus       243 n~VD~~Rv~~~v~~a  257 (263)
T COG0434         243 NPVDLERVRRFVEAA  257 (263)
T ss_pred             CccCHHHHHHHHHHH
Confidence             57888888888765

>PRK07565 dihydroorotate dehydrogenase 2; Reviewed

Probab=96.69  E-value=0.0067  Score=58.25  Aligned_cols=86  Identities=16%  Similarity=0.201  Sum_probs=61.2

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCC--------c----------ccHH---HHHHHH-HhCCCcEEEecCCCH-HHHHHH
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGAD--------P----------LSKA---AAIEAL-HAYPGGLQVGGGINS-DNSLSY  150 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~--------~----------~~~~---~i~~~v-~~~~~pl~vGGGIr~-e~~~~~  150 (316)
                      ++.++|+.+.+.|++++.++.--..        .          ...+   ..+..+ +.+.+||+.-|||++ +|+.++
T Consensus       178 ~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~ipIig~GGI~s~~Da~e~  257 (334)
T PRK07565        178 NLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRVGADLAATTGVHDAEDVIKM  257 (334)
T ss_pred             hHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHH
Confidence            6778999999999999877542100        0          0011   122223 346799999999985 999999


Q ss_pred             HHcCCCEEEeCCeeecCCCCCHHHHHHHHHHh
Q 021156          151 IEEGATHVIVTSYVFNNGQMDLERLKDLVRVV  182 (316)
Q Consensus       151 l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~  182 (316)
                      +.+||+.|-++|.++.+|   |+.+.++.+..
T Consensus       258 l~aGA~~V~v~t~~~~~g---~~~~~~i~~~L  286 (334)
T PRK07565        258 LLAGADVVMIASALLRHG---PDYIGTILRGL  286 (334)
T ss_pred             HHcCCCceeeehHHhhhC---cHHHHHHHHHH
Confidence            999999999999998863   66666655543

>PLN02591 tryptophan synthase

Probab=96.68  E-value=0.0053  Score=56.78  Aligned_cols=73  Identities=18%  Similarity=0.079  Sum_probs=51.4

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCc-------ccHHHHHHHHHh-CCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCee
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADP-------LSKAAAIEALHA-YPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYV  164 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~-------~~~~~i~~~v~~-~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~  164 (316)
                      .+.+.++..++..-..+|+|=..+..       ......++.+++ .+.|+.+|-||+ .++++++.+.|||-||+||++
T Consensus       142 t~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSal  221 (250)
T PLN02591        142 TPTERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVTDKPVAVGFGISKPEHAKQIAGWGADGVIVGSAM  221 (250)
T ss_pred             CCHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcCCCceEEeCCCCCHHHHHHHHhcCCCEEEECHHH
Confidence            44456666666544555666554321       223344555554 689999999999 599999999999999999998


Q ss_pred             ec
Q 021156          165 FN  166 (316)
Q Consensus       165 ~~  166 (316)
                      .+
T Consensus       222 Vk  223 (250)
T PLN02591        222 VK  223 (250)
T ss_pred             HH
Confidence            55

>PRK06806 fructose-bisphosphate aldolase; Provisional

Probab=96.68  E-value=0.063  Score=50.49  Aligned_cols=154  Identities=15%  Similarity=0.195  Sum_probs=93.9

Q ss_pred             HHHHHhCCCcE--EEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHH---HHHhcCceEEEeeeeeecCCee
Q 021156          126 IEALHAYPGGL--QVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDL---VRVVGKQRLVLDLSCRKKDGKY  200 (316)
Q Consensus       126 ~~~v~~~~~pl--~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei---~~~~G~~~IvvslD~k~~~g~~  200 (316)
                      ....++..+|+  ..+=|-..+.++++++.|++.|-+....... +-+.++.+++   .+.+|   +.+..+.-      
T Consensus        67 ~~~a~~~~vpv~lHlDH~~~~e~i~~Al~~G~tsVm~d~s~~~~-~eni~~t~~v~~~a~~~g---v~veaE~g------  136 (281)
T PRK06806         67 VAAAKQAKVPVAVHFDHGMTFEKIKEALEIGFTSVMFDGSHLPL-EENIQKTKEIVELAKQYG---ATVEAEIG------  136 (281)
T ss_pred             HHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEcCCCCCH-HHHHHHHHHHHHHHHHcC---CeEEEEee------
Confidence            33444455554  4555545688999999999999997655432 0013333343   34444   22333321      


Q ss_pred             EEE-eCC---cceecccCHHHHHHHH-HHcCCCEEEEeecCCccccC---CCCHHHHHHHhhcCCCcEEEEe--CCCCHH
Q 021156          201 AIV-TDR---WQKFSDVYLDERVLDF-LASYADEFLVHGVDVEGKKL---GIDDELVALLGKYSPIPVTYAG--GVTTMA  270 (316)
Q Consensus       201 ~v~-~~g---w~~~~~~~~~e~a~~~-~~~Ga~~ilvtdi~~dG~~~---G~d~eli~~l~~~~~iPVIasG--GI~s~e  270 (316)
                      .+- ...   ....+.-++.+ ++++ .+.|++.+-+---..-|+..   ..+++.++++++.+++|+.+-|  ||.. +
T Consensus       137 hlG~~d~~~~~~g~s~t~~ee-a~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~~-e  214 (281)
T PRK06806        137 RVGGSEDGSEDIEMLLTSTTE-AKRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHGGSGISP-E  214 (281)
T ss_pred             eECCccCCcccccceeCCHHH-HHHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEECCCCCCH-H
Confidence            121 000   00111124544 4555 46699987651111112332   2499999999999999999999  7655 7


Q ss_pred             HHHHHHHhCCCcCEEEEccchhhcc
Q 021156          271 DLEKIKVAGIGRVDVTVGSALDIFG  295 (316)
Q Consensus       271 Di~~l~~~G~g~~gVivG~Al~~~~  295 (316)
                      ++.++.+.|  +.++-|.+++  ..
T Consensus       215 ~~~~~i~~G--~~kinv~T~i--~~  235 (281)
T PRK06806        215 DFKKCIQHG--IRKINVATAT--FN  235 (281)
T ss_pred             HHHHHHHcC--CcEEEEhHHH--HH
Confidence            899999998  9999999999  54

>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []

Probab=96.66  E-value=0.005  Score=59.32  Aligned_cols=145  Identities=21%  Similarity=0.090  Sum_probs=89.9

Q ss_pred             HHHHHHcCCCEEEeCCee--------------ecC---C------CCCHHHHHHHHHHhcCceE-EEeeeeeecCCeeEE
Q 021156          147 SLSYIEEGATHVIVTSYV--------------FNN---G------QMDLERLKDLVRVVGKQRL-VLDLSCRKKDGKYAI  202 (316)
Q Consensus       147 ~~~~l~~Gad~VVigt~~--------------~~~---~------~~~~eli~ei~~~~G~~~I-vvslD~k~~~g~~~v  202 (316)
                      ++++.++|+|-|=|-.+-              ++|   |      ++..|.++++.+.+|++.+ .+-+...  +.    
T Consensus       155 A~~A~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rls~~--~~----  228 (341)
T PF00724_consen  155 ARRAKEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRLSPD--DF----  228 (341)
T ss_dssp             HHHHHHTT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEEETT--CS----
T ss_pred             HHHHHHhccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEEeee--cc----
Confidence            455668899988773211              111   1      2456889999999987763 2223221  10    


Q ss_pred             EeCCcceecccCHHHHHHHHHHcCCCEEEE------eecC-----CccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHH
Q 021156          203 VTDRWQKFSDVYLDERVLDFLASYADEFLV------HGVD-----VEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMAD  271 (316)
Q Consensus       203 ~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilv------tdi~-----~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eD  271 (316)
                       ..+..  +..+..++++.+.+.|++.+-+      +...     ......++..++.+.+++.+++|||+.||+.+++.
T Consensus       229 -~~~g~--~~~e~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~~~~~pvi~~G~i~~~~~  305 (341)
T PF00724_consen  229 -VEGGI--TLEETIEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIKKAVKIPVIGVGGIRTPEQ  305 (341)
T ss_dssp             -STTSH--HSHHHHHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHHHHHSSEEEEESSTTHHHH
T ss_pred             -cCCCC--chHHHHHHHHHHHHHhhhhccccccccccccccccccccccccchhhhhhhhhhhhcCceEEEEeeecchhh
Confidence             01111  1112345678888888764421      2111     11112234567788888888999999999999999


Q ss_pred             HHHHHHhCCCcCEEEEccchhhccCcccHHHH
Q 021156          272 LEKIKVAGIGRVDVTVGSALDIFGGNLAYKDV  303 (316)
Q Consensus       272 i~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~  303 (316)
                      ..++++.| .+|.|.+||++  ..+|-..+.+
T Consensus       306 ae~~l~~g-~~DlV~~gR~~--ladPd~~~k~  334 (341)
T PF00724_consen  306 AEKALEEG-KADLVAMGRPL--LADPDLPNKA  334 (341)
T ss_dssp             HHHHHHTT-STSEEEESHHH--HH-TTHHHHH
T ss_pred             hHHHHhcC-CceEeeccHHH--HhCchHHHHH
Confidence            99999998 59999999999  8877544443

It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....

>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases

Probab=96.66  E-value=0.054  Score=50.84  Aligned_cols=153  Identities=14%  Similarity=0.124  Sum_probs=97.4

Q ss_pred             HhCCCc--EEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEe-CC
Q 021156          130 HAYPGG--LQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVT-DR  206 (316)
Q Consensus       130 ~~~~~p--l~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~-~g  206 (316)
                      +...+|  +..+=|-..+++.+++++|++.|.++...+.. +-|.+..+++++...+  .-+++-.-.  |  .|.. .+
T Consensus        66 ~~~~VPV~lHLDH~~~~~~i~~ai~~GftSVMiD~S~l~~-eeNi~~t~~vv~~ah~--~gv~VEaEl--G--~i~g~e~  138 (276)
T cd00947          66 ERASVPVALHLDHGSSFELIKRAIRAGFSSVMIDGSHLPF-EENVAKTKEVVELAHA--YGVSVEAEL--G--RIGGEED  138 (276)
T ss_pred             HHCCCCEEEECCCCCCHHHHHHHHHhCCCEEEeCCCCCCH-HHHHHHHHHHHHHHHH--cCCeEEEEE--e--eecCccC
Confidence            344455  45566655799999999999999998766532 1124555555544321  113333210  1  1210 00


Q ss_pred             c---ceecccCHHHHHHHHHHcCCCEEEEeecCCccccCC----CCHHHHHHHhhcCCCcEEEEeCCCCH-HHHHHHHHh
Q 021156          207 W---QKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLG----IDDELVALLGKYSPIPVTYAGGVTTM-ADLEKIKVA  278 (316)
Q Consensus       207 w---~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G----~d~eli~~l~~~~~iPVIasGGI~s~-eDi~~l~~~  278 (316)
                      .   .+..--++.+....+.+.|++.+-+.-=+.-|.+.+    .|+++++++.+.+++|+..-||=+.. +++.++.+.
T Consensus       139 ~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~~  218 (276)
T cd00947         139 GVVGDEGLLTDPEEAEEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERVNVPLVLHGGSGIPDEQIRKAIKL  218 (276)
T ss_pred             CcccccccCCCHHHHHHHHHHHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHc
Confidence            0   000112466666666677999875433344455544    59999999999999999999998887 458889888


Q ss_pred             CCCcCEEEEccch
Q 021156          279 GIGRVDVTVGSAL  291 (316)
Q Consensus       279 G~g~~gVivG~Al  291 (316)
                      |  +..+=+++.+
T Consensus       219 G--i~KiNi~T~l  229 (276)
T cd00947         219 G--VCKININTDL  229 (276)
T ss_pred             C--CeEEEeChHH
Confidence            8  9999999887

TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.

>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related

Probab=96.65  E-value=0.016  Score=56.24  Aligned_cols=72  Identities=19%  Similarity=0.244  Sum_probs=53.3

Q ss_pred             HHHHHHHHHcCCCEEEEeecCCccc--cCCC-CHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccc
Q 021156          216 DERVLDFLASYADEFLVHGVDVEGK--KLGI-DDELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSA  290 (316)
Q Consensus       216 ~e~a~~~~~~Ga~~ilvtdi~~dG~--~~G~-d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~A  290 (316)
                      .+.++.+.+.|++.|.+-.--  |+  -.|+ -.+.+.++++.+  ++|||++|||++-.|+.+.+.+|  ++.|.+|+.
T Consensus       236 ~~da~~~~~~G~~~i~vs~hG--Gr~~d~~~~~~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLG--A~~v~igr~  311 (356)
T PF01070_consen  236 PEDAKRAVDAGVDGIDVSNHG--GRQLDWGPPTIDALPEIRAAVGDDIPIIADGGIRRGLDVAKALALG--ADAVGIGRP  311 (356)
T ss_dssp             HHHHHHHHHTT-SEEEEESGT--GTSSTTS-BHHHHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT---SEEEESHH
T ss_pred             HHHHHHHHhcCCCEEEecCCC--cccCccccccccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcC--CCeEEEccH
Confidence            367899999999998874321  22  1334 466777777644  69999999999999999999999  899999998


Q ss_pred             h
Q 021156          291 L  291 (316)
Q Consensus       291 l  291 (316)
                      +
T Consensus       312 ~  312 (356)
T PF01070_consen  312 F  312 (356)
T ss_dssp             H
T ss_pred             H
Confidence            8

These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....

>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily

Probab=96.64  E-value=0.03  Score=53.87  Aligned_cols=138  Identities=18%  Similarity=0.140  Sum_probs=93.9

Q ss_pred             HHHHHHHHcCCCEEEe--CCee------ecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHH
Q 021156          145 DNSLSYIEEGATHVIV--TSYV------FNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLD  216 (316)
Q Consensus       145 e~~~~~l~~Gad~VVi--gt~~------~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~  216 (316)
                      +.++++.+.|++.+=+  |...      ..    +.+.++.+.+.+|+ .+.+.+|..          .+|...   +..
T Consensus       145 ~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~----d~~~v~~ir~~~g~-~~~l~vDaN----------~~~~~~---~a~  206 (357)
T cd03316         145 EEAKRAVAEGFTAVKLKVGGPDSGGEDLRE----DLARVRAVREAVGP-DVDLMVDAN----------GRWDLA---EAI  206 (357)
T ss_pred             HHHHHHHHcCCCEEEEcCCCCCcchHHHHH----HHHHHHHHHHhhCC-CCEEEEECC----------CCCCHH---HHH
Confidence            4577788899986543  4322      22    37899999999974 466788873          256421   355


Q ss_pred             HHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccC
Q 021156          217 ERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGG  296 (316)
Q Consensus       217 e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g  296 (316)
                      ++++.+.+.++..+  -.     -....|++.++++++.+++||.+...+.+++|+.++.+.+ .++.+.+--..  .+|
T Consensus       207 ~~~~~l~~~~i~~i--Eq-----P~~~~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~-~~d~v~~k~~~--~GG  276 (357)
T cd03316         207 RLARALEEYDLFWF--EE-----PVPPDDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAG-AVDIIQPDVTK--VGG  276 (357)
T ss_pred             HHHHHhCccCCCeE--cC-----CCCccCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhC-CCCEEecCccc--cCC
Confidence            66677766665432  11     1222378999999998999999999999999999999987 36666665555  555


Q ss_pred             cccHHHHHHHHHhh
Q 021156          297 NLAYKDVVAWHAQQ  310 (316)
Q Consensus       297 ~~~~~~~~~~~~~~  310 (316)
                      -....++.+++++.
T Consensus       277 i~~~~~i~~~a~~~  290 (357)
T cd03316         277 ITEAKKIAALAEAH  290 (357)
T ss_pred             HHHHHHHHHHHHHc
Confidence            55556666665553

Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).

>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences

Probab=96.62  E-value=0.0084  Score=54.56  Aligned_cols=72  Identities=17%  Similarity=0.277  Sum_probs=46.0

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCC-----cccHHHHHHHH-HhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeee
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGAD-----PLSKAAAIEAL-HAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVF  165 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~-----~~~~~~i~~~v-~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~  165 (316)
                      .||+ +|+++.+.|+.  -+.-|.+-     ...++..++.+ .+.++|++|++||- ..|+..+.+.|||-|.++|+.-
T Consensus       132 ~D~v-~akrL~d~Gca--avMPlgsPIGSg~Gi~n~~~l~~i~~~~~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA  208 (247)
T PF05690_consen  132 DDPV-LAKRLEDAGCA--AVMPLGSPIGSGRGIQNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIA  208 (247)
T ss_dssp             S-HH-HHHHHHHTT-S--EBEEBSSSTTT---SSTHHHHHHHHHHGSSSBEEES---SHHHHHHHHHTT-SEEEESHHHH
T ss_pred             CCHH-HHHHHHHCCCC--EEEecccccccCcCCCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHh
Confidence            4666 77777777754  23333321     12344444444 56899999999996 6999999999999999999886


Q ss_pred             cC
Q 021156          166 NN  167 (316)
Q Consensus       166 ~~  167 (316)
                      +.
T Consensus       209 ~A  210 (247)
T PF05690_consen  209 KA  210 (247)
T ss_dssp             TS
T ss_pred             cc
Confidence            53

ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.

>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family

Probab=96.62  E-value=0.098  Score=49.23  Aligned_cols=153  Identities=14%  Similarity=0.123  Sum_probs=96.9

Q ss_pred             HhCCCc--EEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEe-CC
Q 021156          130 HAYPGG--LQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVT-DR  206 (316)
Q Consensus       130 ~~~~~p--l~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~-~g  206 (316)
                      ++..+|  +..+=|-..+.+++.+++|++.|.++...+.- +=|.+..+++++...+  .-+++-.-.  |  .|.. .+
T Consensus        69 ~~~~VPValHLDHg~~~e~i~~ai~~GFtSVM~DgS~lp~-eeNi~~T~~vv~~Ah~--~gv~VEaEl--G--~vgg~e~  141 (282)
T TIGR01858        69 TTYNMPLALHLDHHESLDDIRQKVHAGVRSAMIDGSHFPF-AQNVKLVKEVVDFCHR--QDCSVEAEL--G--RLGGVED  141 (282)
T ss_pred             HHCCCCEEEECCCCCCHHHHHHHHHcCCCEEeecCCCCCH-HHHHHHHHHHHHHHHH--cCCeEEEEE--E--ecCCccC
Confidence            344555  45565666799999999999999997665432 0025555555544311  113333210  1  1110 01


Q ss_pred             c---ce--ecccCHHHHHHHHHHcCCCEEEEeecCCccccCC---CCHHHHHHHhhcCCCcEEEEeCCCCH-HHHHHHHH
Q 021156          207 W---QK--FSDVYLDERVLDFLASYADEFLVHGVDVEGKKLG---IDDELVALLGKYSPIPVTYAGGVTTM-ADLEKIKV  277 (316)
Q Consensus       207 w---~~--~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G---~d~eli~~l~~~~~iPVIasGGI~s~-eDi~~l~~  277 (316)
                      .   .+  ..--++.+..+...+.|++.+-+--=+.-|.+.+   .|+++++++.+.+++|+..-||-+.+ +++.++.+
T Consensus       142 ~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~~iPLVlHGgSG~~~e~~~~ai~  221 (282)
T TIGR01858       142 DLSVDEEDALYTDPQEAKEFVEATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVVDVPLVLHGASDVPDEDVRRTIE  221 (282)
T ss_pred             CCccccchhccCCHHHHHHHHHHHCcCEEecccCccccCcCCCCccCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHH
Confidence            0   00  0012566666777779999875433344565554   49999999999999999999887765 55777888


Q ss_pred             hCCCcCEEEEccch
Q 021156          278 AGIGRVDVTVGSAL  291 (316)
Q Consensus       278 ~G~g~~gVivG~Al  291 (316)
                      .|  +..+=|++.+
T Consensus       222 ~G--i~KiNi~T~l  233 (282)
T TIGR01858       222 LG--ICKVNVATEL  233 (282)
T ss_pred             cC--CeEEEeCcHH
Confidence            88  9999999987

This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.

>PLN02826 dihydroorotate dehydrogenase

Probab=96.62  E-value=0.0065  Score=60.04  Aligned_cols=86  Identities=14%  Similarity=0.118  Sum_probs=64.2

Q ss_pred             CHHHHHHHHHHcCCCcceEEE--------ecC--------C---cc---cHHHHHHHH-HhC--CCcEEEecCCCH-HHH
Q 021156           94 SAAEFANLYKEDGLTGGHAIM--------LGA--------D---PL---SKAAAIEAL-HAY--PGGLQVGGGINS-DNS  147 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvD--------Lda--------~---~~---~~~~i~~~v-~~~--~~pl~vGGGIr~-e~~  147 (316)
                      +..++|+...+.|++++.+++        +..        +   .+   ....++..+ +.+  .+||+.-|||.+ +|+
T Consensus       277 di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~~ipIIgvGGI~sg~Da  356 (409)
T PLN02826        277 DLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRGKIPLVGCGGVSSGEDA  356 (409)
T ss_pred             HHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHH
Confidence            677899999999999999886        211        0   11   112222333 344  589999999985 999


Q ss_pred             HHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHh
Q 021156          148 LSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVV  182 (316)
Q Consensus       148 ~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~  182 (316)
                      .+++.+||+.|-++|.+...|   |+++.++.+..
T Consensus       357 ~e~i~AGAs~VQv~Ta~~~~G---p~~i~~I~~eL  388 (409)
T PLN02826        357 YKKIRAGASLVQLYTAFAYEG---PALIPRIKAEL  388 (409)
T ss_pred             HHHHHhCCCeeeecHHHHhcC---HHHHHHHHHHH
Confidence            999999999999999987753   88888887765

>PRK08091 ribulose-phosphate 3-epimerase; Validated

Probab=96.61  E-value=0.011  Score=53.84  Aligned_cols=35  Identities=11%  Similarity=0.165  Sum_probs=32.5

Q ss_pred             CCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecC
Q 021156          133 PGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNN  167 (316)
Q Consensus       133 ~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~  167 (316)
                      +..++|+|||+.+.+.++.++|||.+|.||+.+++
T Consensus       179 ~~~IeVDGGI~~~ti~~l~~aGaD~~V~GSalF~~  213 (228)
T PRK08091        179 EKLISIDGSMTLELASYLKQHQIDWVVSGSALFSQ  213 (228)
T ss_pred             CceEEEECCCCHHHHHHHHHCCCCEEEEChhhhCC
Confidence            46699999999999999999999999999999965

>PRK11320 prpB 2-methylisocitrate lyase; Provisional

Probab=96.56  E-value=0.051  Score=51.40  Aligned_cols=178  Identities=18%  Similarity=0.148  Sum_probs=102.1

Q ss_pred             CHHHHHHHHHHcCCCcceEEEec-C-C----c----ccHHHH----HHHHHhCCCcEEEec--CC-C---H-HHHHHHHH
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLG-A-D----P----LSKAAA----IEALHAYPGGLQVGG--GI-N---S-DNSLSYIE  152 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLd-a-~----~----~~~~~i----~~~v~~~~~pl~vGG--GI-r---~-e~~~~~l~  152 (316)
                      |+. -|+..+++|++.+++-=.. + .    +    ....++    .++.+.+++|+++++  |. .   . ..++++.+
T Consensus        26 Da~-SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~r~V~~~~~  104 (292)
T PRK11320         26 NAY-HALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDACDLPLLVDIDTGFGGAFNIARTVKSMIK  104 (292)
T ss_pred             CHH-HHHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHH
Confidence            666 6677777787755443221 1 0    1    123333    333345789999863  22 3   2 55899999


Q ss_pred             cCCCEEEe-CCeeecC-----C-CC-CH-HHHHHHHHHhcCce-EEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH
Q 021156          153 EGATHVIV-TSYVFNN-----G-QM-DL-ERLKDLVRVVGKQR-LVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF  222 (316)
Q Consensus       153 ~Gad~VVi-gt~~~~~-----~-~~-~~-eli~ei~~~~G~~~-IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~  222 (316)
                      +|+.-+.| +...-+.     + ++ ++ +++.+|....-..+ .-+-|-.|. |-   ....|+.     +.++.++.+
T Consensus       105 aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiART-Da---~~~~g~d-----eAI~Ra~aY  175 (292)
T PRK11320        105 AGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMART-DA---LAVEGLD-----AAIERAQAY  175 (292)
T ss_pred             cCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEec-Cc---ccccCHH-----HHHHHHHHH
Confidence            99999888 3221110     1 11 22 34444443321100 001111111 10   0112222     467889999


Q ss_pred             HHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcE---EEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          223 LASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPV---TYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       223 ~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPV---IasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      .+.|++.+.++...        +.+.++++.+.++.|+   ...+|-...-++.+|.++|  +.-|+.|.++
T Consensus       176 ~eAGAD~ifi~~~~--------~~~~i~~~~~~~~~Pl~~n~~~~~~~p~~s~~~L~~lG--v~~v~~~~~~  237 (292)
T PRK11320        176 VEAGADMIFPEAMT--------ELEMYRRFADAVKVPILANITEFGATPLFTTEELASAG--VAMVLYPLSA  237 (292)
T ss_pred             HHcCCCEEEecCCC--------CHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHHHHHcC--CcEEEEChHH
Confidence            99999999886643        5788899988888888   3345543334577788888  8889999766

>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed

Probab=96.55  E-value=0.11  Score=48.97  Aligned_cols=155  Identities=15%  Similarity=0.148  Sum_probs=96.3

Q ss_pred             HHHhCCCcE--EEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEe-
Q 021156          128 ALHAYPGGL--QVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVT-  204 (316)
Q Consensus       128 ~v~~~~~pl--~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~-  204 (316)
                      ..++..+|+  ..+=|-..+.+++++++|++.|.++...+.- +=|.+..+++++...+  .-+++-.-.  |  .|.. 
T Consensus        69 ~A~~~~VPV~lHLDHg~~~e~i~~Ai~~GftSVM~DgS~l~~-eeNi~~T~~vv~~Ah~--~gv~VEaEl--G--~vgg~  141 (284)
T PRK09195         69 AAKQYHHPLALHLDHHEKFDDIAQKVRSGVRSVMIDGSHLPF-AQNISLVKEVVDFCHR--FDVSVEAEL--G--RLGGQ  141 (284)
T ss_pred             HHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEEeCCCCCCH-HHHHHHHHHHHHHHHH--cCCEEEEEE--e--cccCc
Confidence            334455554  4555556799999999999999997665431 0024555555543311  113333210  1  1110 


Q ss_pred             CCc----cee-cccCHHHHHHHHHHcCCCEEEEeecCCccccCC---CCHHHHHHHhhcCCCcEEEEeCCCCH-HHHHHH
Q 021156          205 DRW----QKF-SDVYLDERVLDFLASYADEFLVHGVDVEGKKLG---IDDELVALLGKYSPIPVTYAGGVTTM-ADLEKI  275 (316)
Q Consensus       205 ~gw----~~~-~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G---~d~eli~~l~~~~~iPVIasGGI~s~-eDi~~l  275 (316)
                      .+.    ... .--++.+..+...+.|++.+-+--=+.-|.+.+   .|+++++++.+.+++|+..-||=+.+ ++++++
T Consensus       142 e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~a  221 (284)
T PRK09195        142 EDDLQVDEADALYTDPAQAREFVEATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWVNIPLVLHGASGLPTKDIQQT  221 (284)
T ss_pred             ccCcccccccccCCCHHHHHHHHHHHCcCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHH
Confidence            011    000 012566666666678999775432244556544   59999999999999999998887655 557778


Q ss_pred             HHhCCCcCEEEEccch
Q 021156          276 KVAGIGRVDVTVGSAL  291 (316)
Q Consensus       276 ~~~G~g~~gVivG~Al  291 (316)
                      .+.|  +..+=|++.+
T Consensus       222 i~~G--i~KiNi~T~l  235 (284)
T PRK09195        222 IKLG--ICKVNVATEL  235 (284)
T ss_pred             HHcC--CeEEEeCcHH
Confidence            8888  9999999988

>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE)

Probab=96.55  E-value=0.009  Score=52.76  Aligned_cols=35  Identities=29%  Similarity=0.363  Sum_probs=32.6

Q ss_pred             CCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecC
Q 021156          133 PGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNN  167 (316)
Q Consensus       133 ~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~  167 (316)
                      +.|+.++|||+.+++..+.+.|+|.+++||+.++.
T Consensus       166 ~~pi~v~GGI~~env~~~~~~gad~iivgsai~~~  200 (211)
T cd00429         166 NLLIEVDGGINLETIPLLAEAGADVLVAGSALFGS  200 (211)
T ss_pred             CeEEEEECCCCHHHHHHHHHcCCCEEEECHHHhCC
Confidence            48999999999999999999999999999999864

This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.

>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites

Probab=96.55  E-value=0.018  Score=51.94  Aligned_cols=73  Identities=18%  Similarity=0.088  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHcCCCcceEEEecCCc---c---cHHHHHHHHH-hCCCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeeec
Q 021156           95 AAEFANLYKEDGLTGGHAIMLGADP---L---SKAAAIEALH-AYPGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        95 p~e~a~~~~~~G~~~l~lvDLda~~---~---~~~~i~~~v~-~~~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      +.+.++...+.|++.+++.......   .   .....++.++ ..++|+.++|||+. +++.+++..||+.|++||.+..
T Consensus       111 ~~~~~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS~l~~  190 (236)
T cd04730         111 SVEEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGIADGRGIAAALALGADGVQMGTRFLA  190 (236)
T ss_pred             CHHHHHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCcEEEEchhhhc
Confidence            3456777778898877665443211   1   1223334443 46899999999995 9999999999999999999887


Q ss_pred             C
Q 021156          167 N  167 (316)
Q Consensus       167 ~  167 (316)
                      .
T Consensus       191 ~  191 (236)
T cd04730         191 T  191 (236)
T ss_pred             C
Confidence            6

NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase

Probab=96.55  E-value=0.0082  Score=58.44  Aligned_cols=72  Identities=19%  Similarity=0.183  Sum_probs=56.2

Q ss_pred             HHHHHHHHHcCCCEEEEeecCCcccc--CCC-CHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccc
Q 021156          216 DERVLDFLASYADEFLVHGVDVEGKK--LGI-DDELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSA  290 (316)
Q Consensus       216 ~e~a~~~~~~Ga~~ilvtdi~~dG~~--~G~-d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~A  290 (316)
                      .+.++.+.+.|++.|++-.-  .|+.  ..+ -.+.+.++.+.+  ++|||+.|||++-.|+.+++.+|  +++|.+|+.
T Consensus       235 ~~dA~~a~~~Gvd~I~Vsnh--GGrqld~~~~t~~~L~ei~~av~~~~~vi~dGGIr~G~Dv~KALALG--A~aV~iGr~  310 (367)
T PLN02493        235 GEDARIAIQAGAAGIIVSNH--GARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG--ASGIFIGRP  310 (367)
T ss_pred             HHHHHHHHHcCCCEEEECCC--CCCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcC--CCEEEEcHH
Confidence            47888999999999876332  1222  122 356677776543  59999999999999999999999  899999998


Q ss_pred             h
Q 021156          291 L  291 (316)
Q Consensus       291 l  291 (316)
                      +
T Consensus       311 ~  311 (367)
T PLN02493        311 V  311 (367)
T ss_pred             H
Confidence            8

>TIGR00167 cbbA ketose-bisphosphate aldolases

Probab=96.52  E-value=0.069  Score=50.41  Aligned_cols=150  Identities=17%  Similarity=0.189  Sum_probs=94.7

Q ss_pred             CCcE--EEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEe-CC---
Q 021156          133 PGGL--QVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVT-DR---  206 (316)
Q Consensus       133 ~~pl--~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~-~g---  206 (316)
                      .+|+  ..+=|-..+.+++.+++|++.|.++...+.- +=|.+..+++++...+-  -+++-.-.  |  .|.. .+   
T Consensus        77 ~VPV~lHLDHg~~~e~i~~ai~~GftSVMiDgS~lp~-eeNi~~T~~vv~~Ah~~--gv~VEaEl--G--~vgg~e~~~~  149 (288)
T TIGR00167        77 GVPVALHLDHGASEEDCAQAVKAGFSSVMIDGSHEPF-EENIELTKKVVERAHKM--GVSVEAEL--G--TLGGEEDGVS  149 (288)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHcCCCEEEecCCCCCH-HHHHHHHHHHHHHHHHc--CCEEEEEE--e--eccCccCCcc
Confidence            5554  4455556799999999999999997665531 01255555555443111  13333210  1  1110 00   


Q ss_pred             -cceec-ccCHHHHHHHHHHcCCCEEEEeecCCccccCC----CCHHHHHHHhhcCCCcEEEEeCCCCH-HHHHHHHHhC
Q 021156          207 -WQKFS-DVYLDERVLDFLASYADEFLVHGVDVEGKKLG----IDDELVALLGKYSPIPVTYAGGVTTM-ADLEKIKVAG  279 (316)
Q Consensus       207 -w~~~~-~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G----~d~eli~~l~~~~~iPVIasGGI~s~-eDi~~l~~~G  279 (316)
                       ..... --++.+..+...+.|++.+-+--=+.-|.+.+    .|+++++++.+.+++|+..-||=+.. ++++++.+.|
T Consensus       150 ~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I~~~v~vPLVlHGgSG~~~e~~~~ai~~G  229 (288)
T TIGR00167       150 VADESALYTDPEEAKEFVKLTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQKYVNLPLVLHGGSGIPDEEIKKAISLG  229 (288)
T ss_pred             cccccccCCCHHHHHHHHhccCCcEEeeccCccccccCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcC
Confidence             00000 11455555555567999875433234444432    69999999999999999999998887 5788899988


Q ss_pred             CCcCEEEEccch
Q 021156          280 IGRVDVTVGSAL  291 (316)
Q Consensus       280 ~g~~gVivG~Al  291 (316)
                        +..+=|++.+
T Consensus       230 --i~KiNi~T~l  239 (288)
T TIGR00167       230 --VVKVNIDTEL  239 (288)
T ss_pred             --CeEEEcChHH
Confidence              9999999877

fructose-bisphosphate and tagatose-bisphosphate aldolase.

>PRK07084 fructose-bisphosphate aldolase; Provisional

Probab=96.51  E-value=0.12  Score=49.48  Aligned_cols=147  Identities=12%  Similarity=0.116  Sum_probs=93.8

Q ss_pred             CCc--EEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHH---HhcCceEEEeeeeeecCCeeEEEe-CC
Q 021156          133 PGG--LQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVR---VVGKQRLVLDLSCRKKDGKYAIVT-DR  206 (316)
Q Consensus       133 ~~p--l~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~---~~G~~~IvvslD~k~~~g~~~v~~-~g  206 (316)
                      .+|  +..+=|-..+.+++.+++|.+.|.++...+.- +-|.+..+++++   .+|     +++-.-.  |  .+.. .+
T Consensus        85 ~VPV~lHLDHg~~~e~i~~ai~~GftSVMiD~S~lp~-eeNI~~T~evv~~Ah~~G-----vsVEaEl--G--~igg~ed  154 (321)
T PRK07084         85 PIPIVLHLDHGDSFELCKDCIDSGFSSVMIDGSHLPY-EENVALTKKVVEYAHQFD-----VTVEGEL--G--VLAGVED  154 (321)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHcCCCEEEeeCCCCCH-HHHHHHHHHHHHHHHHcC-----CeEEEEE--e--eecCccC
Confidence            455  56666666799999999999999997665532 002445555544   344     3443210  1  1110 00


Q ss_pred             c---ceecccCHHHHHHHHHHcCCCEEEEeecCCccccCC--------CCHHHHHHHhhcC-CCcEEEEeCCCC------
Q 021156          207 W---QKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLG--------IDDELVALLGKYS-PIPVTYAGGVTT------  268 (316)
Q Consensus       207 w---~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G--------~d~eli~~l~~~~-~iPVIasGGI~s------  268 (316)
                      .   ....--++.+..+.+.+.|++.+-+--=+.-|.+.+        .|+++++++.+.+ ++|+..-||=..      
T Consensus       155 ~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~~vPLVLHGgSg~~~~~~~  234 (321)
T PRK07084        155 EVSAEHHTYTQPEEVEDFVKKTGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIPGFPIVLHGSSSVPQEYVK  234 (321)
T ss_pred             CccCcccccCCHHHHHHHHHHhCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhcCCCCEEEeCCCCCcHHHHH
Confidence            0   010012566666666678999774322234444432        5999999999888 799999998744      


Q ss_pred             ----------------HHHHHHHHHhCCCcCEEEEccch
Q 021156          269 ----------------MADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       269 ----------------~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                                      .++++++.+.|  +..|=+++.+
T Consensus       235 ~~~~~g~~~~~~~Gi~~e~~~kai~~G--I~KINi~Tdl  271 (321)
T PRK07084        235 TINEYGGKLKDAIGIPEEQLRKAAKSA--VCKINIDSDG  271 (321)
T ss_pred             HHHHhcCccccCCCCCHHHHHHHHHcC--CceeccchHH
Confidence                            48899999998  8889999876

>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]

Probab=96.48  E-value=0.0082  Score=53.68  Aligned_cols=60  Identities=32%  Similarity=0.302  Sum_probs=49.3

Q ss_pred             CHHHHHHHhhcCCCcE--EEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHH
Q 021156          245 DDELVALLGKYSPIPV--TYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHA  308 (316)
Q Consensus       245 d~eli~~l~~~~~iPV--IasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~  308 (316)
                      .++++++..+.-.+||  +++||+.++.|..-+.++|  |+||.+|+.+  |...=+++.+.+.++
T Consensus       195 P~dLv~~t~q~GrlPVV~FAaGGvaTPADAALmMQLG--CdGVFVGSgi--Fks~dP~k~a~aiVq  256 (296)
T KOG1606|consen  195 PYDLVKQTKQLGRLPVVNFAAGGVATPADAALMMQLG--CDGVFVGSGI--FKSGDPVKRARAIVQ  256 (296)
T ss_pred             cHHHHHHHHHcCCCceEEecccCcCChhHHHHHHHcC--CCeEEecccc--ccCCCHHHHHHHHHH
Confidence            5678888877777887  7999999999999999999  9999999999  776656665555443

>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate

Probab=96.46  E-value=0.012  Score=53.01  Aligned_cols=72  Identities=18%  Similarity=0.020  Sum_probs=49.8

Q ss_pred             CHHHHHHHHHHcCCCcceE--EEecCC-----cccHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeee
Q 021156           94 SAAEFANLYKEDGLTGGHA--IMLGAD-----PLSKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVF  165 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~l--vDLda~-----~~~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~  165 (316)
                      +|. -+....+.|++.+.+  ......     ......+.++.+.+++|+.++|||+ .++++++++.|||-|++||++.
T Consensus       132 t~~-ea~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia~GGI~~~~~~~~~l~~GadgV~vGsal~  210 (219)
T cd04729         132 TLE-EALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKALGIPVIAEGRINSPEQAAKALELGADAVVVGSAIT  210 (219)
T ss_pred             CHH-HHHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHCCCCEEEEchHHh
Confidence            454 446666778886532  122111     1223334444345689999999998 5999999999999999999987


Q ss_pred             c
Q 021156          166 N  166 (316)
Q Consensus       166 ~  166 (316)
                      +
T Consensus       211 ~  211 (219)
T cd04729         211 R  211 (219)
T ss_pred             C
Confidence            7

This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.

>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed

Probab=96.45  E-value=0.13  Score=48.41  Aligned_cols=154  Identities=14%  Similarity=0.154  Sum_probs=97.2

Q ss_pred             HHhCCCcE--EEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEe-C
Q 021156          129 LHAYPGGL--QVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVT-D  205 (316)
Q Consensus       129 v~~~~~pl--~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~-~  205 (316)
                      .++..+|+  ..+=|-..+.+++++++|.+.|.++...+.- +=|.+..+++++...  ..-+++-.-.  |  .|.. .
T Consensus        70 A~~~~VPValHLDH~~~~e~i~~ai~~GftSVM~DgS~lp~-eeNi~~T~~vv~~Ah--~~gvsVEaEl--G--~vgg~e  142 (284)
T PRK12857         70 AEKASVPVALHLDHGTDFEQVMKCIRNGFTSVMIDGSKLPL-EENIALTKKVVEIAH--AVGVSVEAEL--G--KIGGTE  142 (284)
T ss_pred             HHHCCCCEEEECCCCCCHHHHHHHHHcCCCeEEEeCCCCCH-HHHHHHHHHHHHHHH--HcCCEEEEEe--e--ecCCcc
Confidence            34445554  5555656799999999999999997665432 012555555554431  1113443310  1  1210 0


Q ss_pred             Cc----cee-cccCHHHHHHHHHHcCCCEEEEeecCCccccCC---CCHHHHHHHhhcCCCcEEEEeCCCCH-HHHHHHH
Q 021156          206 RW----QKF-SDVYLDERVLDFLASYADEFLVHGVDVEGKKLG---IDDELVALLGKYSPIPVTYAGGVTTM-ADLEKIK  276 (316)
Q Consensus       206 gw----~~~-~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G---~d~eli~~l~~~~~iPVIasGGI~s~-eDi~~l~  276 (316)
                      +.    ... .--++.+..+...+.|++.+-+--=+.-|.+.|   .|+++++++.+.+++|+..-||=+.+ ++++++.
T Consensus       143 ~~~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai  222 (284)
T PRK12857        143 DDITVDEREAAMTDPEEARRFVEETGVDALAIAIGTAHGPYKGEPKLDFDRLAKIKELVNIPIVLHGSSGVPDEAIRKAI  222 (284)
T ss_pred             CCCCcccchhhcCCHHHHHHHHHHHCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHH
Confidence            11    000 012566666666778999775433345566655   49999999999899999998887765 5577788


Q ss_pred             HhCCCcCEEEEccch
Q 021156          277 VAGIGRVDVTVGSAL  291 (316)
Q Consensus       277 ~~G~g~~gVivG~Al  291 (316)
                      +.|  +..+=|++.+
T Consensus       223 ~~G--i~KiNi~T~~  235 (284)
T PRK12857        223 SLG--VRKVNIDTNI  235 (284)
T ss_pred             HcC--CeEEEeCcHH
Confidence            888  9999999877

>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]

Probab=96.44  E-value=0.012  Score=53.38  Aligned_cols=76  Identities=20%  Similarity=0.296  Sum_probs=55.9

Q ss_pred             eecCCccCHHHHHHHHHHcCCCcceEEEecCC-----cccHHHHHHHH-HhCCCcEEEecCCC-HHHHHHHHHcCCCEEE
Q 021156           87 TNFESDKSAAEFANLYKEDGLTGGHAIMLGAD-----PLSKAAAIEAL-HAYPGGLQVGGGIN-SDNSLSYIEEGATHVI  159 (316)
Q Consensus        87 ~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~-----~~~~~~i~~~v-~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VV  159 (316)
                      -+|. ++||+ +|+++.+.|+-  -+.-|.+-     ...++..++++ .+..+|++|+.||- ..|+-...+.|||-|.
T Consensus       134 lPY~-~dD~v-~arrLee~Gca--avMPl~aPIGSg~G~~n~~~l~iiie~a~VPviVDAGiG~pSdAa~aMElG~DaVL  209 (262)
T COG2022         134 LPYT-TDDPV-LARRLEEAGCA--AVMPLGAPIGSGLGLQNPYNLEIIIEEADVPVIVDAGIGTPSDAAQAMELGADAVL  209 (262)
T ss_pred             eecc-CCCHH-HHHHHHhcCce--EeccccccccCCcCcCCHHHHHHHHHhCCCCEEEeCCCCChhHHHHHHhcccceee
Confidence            4555 36888 99999998854  23344321     23455555555 46799999999996 6999999999999999


Q ss_pred             eCCeeec
Q 021156          160 VTSYVFN  166 (316)
Q Consensus       160 igt~~~~  166 (316)
                      ++|+.-.
T Consensus       210 ~NTAiA~  216 (262)
T COG2022         210 LNTAIAR  216 (262)
T ss_pred             hhhHhhc
Confidence            9998753

>PRK11815 tRNA-dihydrouridine synthase A; Provisional

Probab=96.43  E-value=0.01  Score=57.13  Aligned_cols=84  Identities=14%  Similarity=0.177  Sum_probs=62.7

Q ss_pred             CHHHHHHHHHHcCCCcceEEE----ecCCc---------ccHHHHHHHHHhC-CCcEEEecCCC-HHHHHHHHHcCCCEE
Q 021156           94 SAAEFANLYKEDGLTGGHAIM----LGADP---------LSKAAAIEALHAY-PGGLQVGGGIN-SDNSLSYIEEGATHV  158 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvD----Lda~~---------~~~~~i~~~v~~~-~~pl~vGGGIr-~e~~~~~l~~Gad~V  158 (316)
                      +..++++.+.++|++.+++--    +.+-.         .+.+.+.++.+.+ ++|++..|||+ .+|++++++ |||.|
T Consensus       152 ~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~-~aDgV  230 (333)
T PRK11815        152 FLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQ-HVDGV  230 (333)
T ss_pred             HHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-cCCEE
Confidence            356889999999998877642    11111         1244444444454 79999999998 599999997 79999


Q ss_pred             EeCCeeecCCCCCHHHHHHHHHHh
Q 021156          159 IVTSYVFNNGQMDLERLKDLVRVV  182 (316)
Q Consensus       159 Vigt~~~~~~~~~~eli~ei~~~~  182 (316)
                      .+|...+.|    |.++.++.+.+
T Consensus       231 mIGRa~l~n----P~~~~~~~~~~  250 (333)
T PRK11815        231 MIGRAAYHN----PYLLAEVDREL  250 (333)
T ss_pred             EEcHHHHhC----CHHHHHHHHHh
Confidence            999999998    99999987654

>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes

Probab=96.43  E-value=0.0093  Score=56.38  Aligned_cols=70  Identities=21%  Similarity=0.164  Sum_probs=51.0

Q ss_pred             HHHHHHHHcCCCcceEEEe-----cCCcccHHHHHHHHHhC--CCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeeec
Q 021156           97 EFANLYKEDGLTGGHAIML-----GADPLSKAAAIEALHAY--PGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        97 e~a~~~~~~G~~~l~lvDL-----da~~~~~~~i~~~v~~~--~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      +.|+...++|++.+.+..-     +........+.++.+.+  .+|++..|||++ +|+.+++..||+-|.+|+.++.
T Consensus       184 ~~a~~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~ig~~~l~  261 (299)
T cd02809         184 EDALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIGRPFLY  261 (299)
T ss_pred             HHHHHHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHH
Confidence            5788888999887655421     11123344444444445  499999999995 9999999999999999998764

This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.

>PRK07315 fructose-bisphosphate aldolase; Provisional

Probab=96.42  E-value=0.073  Score=50.37  Aligned_cols=147  Identities=15%  Similarity=0.211  Sum_probs=90.3

Q ss_pred             CcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceeccc
Q 021156          134 GGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDV  213 (316)
Q Consensus       134 ~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~  213 (316)
                      +-+-.+=| ..+.++++++.|++.|-+........+ +.+..+++++...+-.+.+..-+-...|. .-...+.   +..
T Consensus        80 V~lHLDH~-~~~~i~~ai~~GftSVm~d~S~l~~eE-ni~~t~~v~~~a~~~gv~vE~ElG~i~g~-ed~~~g~---s~~  153 (293)
T PRK07315         80 VAIHLDHG-HYEDALECIEVGYTSIMFDGSHLPVEE-NLKLAKEVVEKAHAKGISVEAEVGTIGGE-EDGIIGK---GEL  153 (293)
T ss_pred             EEEECCCC-CHHHHHHHHHcCCCEEEEcCCCCCHHH-HHHHHHHHHHHHHHcCCEEEEecCcccCc-CccccCc---cCC
Confidence            33455667 678999999999999999766554200 13444444433211123333322100110 0000111   111


Q ss_pred             CHHHHHHHHHHcCCCEEEEe--ecCCcccc----CCCCHHHHHHHhhcC-CCcEEEEeC--CCCHHHHHHHHHhCCCcCE
Q 021156          214 YLDERVLDFLASYADEFLVH--GVDVEGKK----LGIDDELVALLGKYS-PIPVTYAGG--VTTMADLEKIKVAGIGRVD  284 (316)
Q Consensus       214 ~~~e~a~~~~~~Ga~~ilvt--di~~dG~~----~G~d~eli~~l~~~~-~iPVIasGG--I~s~eDi~~l~~~G~g~~g  284 (316)
                      .-.+.++++.+.|++.+-+-  .+  -|.+    ...|++.++++++.+ ++|+.+-||  +.. +++.++.+.|  +.+
T Consensus       154 t~peea~~f~~tgvD~LAv~iG~v--HG~y~t~~k~l~~e~L~~i~~~~~~iPlVlhGGSGi~~-e~~~~~i~~G--i~K  228 (293)
T PRK07315        154 APIEDAKAMVETGIDFLAAGIGNI--HGPYPENWEGLDLDHLEKLTEAVPGFPIVLHGGSGIPD-DQIQEAIKLG--VAK  228 (293)
T ss_pred             CCHHHHHHHHHcCCCEEeeccccc--cccCCCCCCcCCHHHHHHHHHhccCCCEEEECCCCCCH-HHHHHHHHcC--CCE
Confidence            22355667778999987543  22  1332    246999999999988 599999999  654 7799999998  999


Q ss_pred             EEEccch
Q 021156          285 VTVGSAL  291 (316)
Q Consensus       285 VivG~Al  291 (316)
                      +-|++++
T Consensus       229 iNv~T~i  235 (293)
T PRK07315        229 VNVNTEC  235 (293)
T ss_pred             EEEccHH
Confidence            9999999

>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]

Probab=96.38  E-value=0.018  Score=51.94  Aligned_cols=74  Identities=18%  Similarity=0.165  Sum_probs=48.9

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCC---cccHHHHHHHH---Hh-C----CCcEEEecCCCHHHHHHHHHcCCCEEEeC
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGAD---PLSKAAAIEAL---HA-Y----PGGLQVGGGINSDNSLSYIEEGATHVIVT  161 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~---~~~~~~i~~~v---~~-~----~~pl~vGGGIr~e~~~~~l~~Gad~VVig  161 (316)
                      ..|++..+.+... ++.+.+.-.+-+   +.-.+.+.+.+   ++ .    +.-|+|+|||+.+.+..+.++|||.+|.|
T Consensus       119 ~Tp~~~i~~~l~~-vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~~~t~~~~~~AGad~~VaG  197 (220)
T COG0036         119 ATPLEALEPVLDD-VDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDERLDILIEVDGGINLETIKQLAAAGADVFVAG  197 (220)
T ss_pred             CCCHHHHHHHHhh-CCEEEEEeECCCCcccccCHHHHHHHHHHHHHhcccCCeEEEEeCCcCHHHHHHHHHcCCCEEEEE
Confidence            3566666655443 555555555522   22222222222   21 1    35699999999999999999999999999


Q ss_pred             CeeecC
Q 021156          162 SYVFNN  167 (316)
Q Consensus       162 t~~~~~  167 (316)
                      |+.+.+
T Consensus       198 SalF~~  203 (220)
T COG0036         198 SALFGA  203 (220)
T ss_pred             EEEeCC
Confidence            999986

>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism

Probab=96.35  E-value=0.018  Score=52.48  Aligned_cols=71  Identities=23%  Similarity=0.283  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHcCCCEEEEeecCCccccCCC---CHHHHHHHhhcCCCc----EEEEeCC------CCHHHHHHHHHhCCC
Q 021156          215 LDERVLDFLASYADEFLVHGVDVEGKKLGI---DDELVALLGKYSPIP----VTYAGGV------TTMADLEKIKVAGIG  281 (316)
Q Consensus       215 ~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~---d~eli~~l~~~~~iP----VIasGGI------~s~eDi~~l~~~G~g  281 (316)
                      +...++.+.+.|++.+= |.-.  +. .|.   |.+.++++.+.+++|    |.++||+      ++.++..+++++|  
T Consensus       148 I~~a~ria~e~GaD~vK-t~tg--~~-~~~t~~~~~~~~~~~~~~~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aG--  221 (236)
T PF01791_consen  148 IARAARIAAELGADFVK-TSTG--KP-VGATPEDVELMRKAVEAAPVPGKVGVKASGGIDAEDFLRTLEDALEFIEAG--  221 (236)
T ss_dssp             HHHHHHHHHHTT-SEEE-EE-S--SS-SCSHHHHHHHHHHHHHTHSSTTTSEEEEESSSSHHHHHHSHHHHHHHHHTT--
T ss_pred             HHHHHHHHHHhCCCEEE-ecCC--cc-ccccHHHHHHHHHHHHhcCCCcceEEEEeCCCChHHHHHHHHHHHHHHHcC--
Confidence            45567788899999652 3332  22 444   566777777767889    9999999      9999999999999  


Q ss_pred             c--CEEEEccch
Q 021156          282 R--VDVTVGSAL  291 (316)
Q Consensus       282 ~--~gVivG~Al  291 (316)
                      +  .|++.|+.+
T Consensus       222 a~~~G~~~Gr~i  233 (236)
T PF01791_consen  222 ADRIGTSSGRNI  233 (236)
T ss_dssp             HSEEEEEEHHHH
T ss_pred             ChhHHHHHHHHH
Confidence            6  999999998

2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....

>PRK05835 fructose-bisphosphate aldolase; Provisional

Probab=96.32  E-value=0.1  Score=49.62  Aligned_cols=149  Identities=16%  Similarity=0.141  Sum_probs=95.9

Q ss_pred             CcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEE-eCCc----c
Q 021156          134 GGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIV-TDRW----Q  208 (316)
Q Consensus       134 ~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~-~~gw----~  208 (316)
                      +-+-.+=|-..|.+++++++|.+.|.++...+.- +=|.+..+++++....  .-+++-.-.  |  .|. ..+.    .
T Consensus        77 ValHLDHg~~~e~i~~ai~~GftSVM~DgS~l~~-eeNi~~T~~vve~Ah~--~gv~VEaEl--G--~vgg~ed~~~~~~  149 (307)
T PRK05835         77 VALHLDHGTTFESCEKAVKAGFTSVMIDASHHAF-EENLELTSKVVKMAHN--AGVSVEAEL--G--RLMGIEDNISVDE  149 (307)
T ss_pred             EEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCH-HHHHHHHHHHHHHHHH--cCCEEEEEe--c--ccCCccCCccccc
Confidence            3345566667799999999999999997654321 0025555555543211  113443310  1  121 0011    0


Q ss_pred             -eecccCHHHHHHHHHHcCCCEEEEeecCCccccC--C---CCHHHHHHHhhcCCCcEEEEeCCCCHH------------
Q 021156          209 -KFSDVYLDERVLDFLASYADEFLVHGVDVEGKKL--G---IDDELVALLGKYSPIPVTYAGGVTTMA------------  270 (316)
Q Consensus       209 -~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~--G---~d~eli~~l~~~~~iPVIasGGI~s~e------------  270 (316)
                       +..--++.+..+...+.|++.+-+--=+.-|.+.  |   .|++.++++++.+++|+..-||=+.++            
T Consensus       150 ~~~~~TdPeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~~iPLVLHGgSGip~e~~~~~~~~g~~  229 (307)
T PRK05835        150 KDAVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVLHGASAIPDDVRKSYLDAGGD  229 (307)
T ss_pred             ccccCCCHHHHHHHHHhhCCCEEEEccCccccccCCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCchHHhhhhhhhccc
Confidence             0001246666666667899986443335556665  4   499999999999999999999998877            


Q ss_pred             ----------HHHHHHHhCCCcCEEEEccch
Q 021156          271 ----------DLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       271 ----------Di~~l~~~G~g~~gVivG~Al  291 (316)
                                ++.++.+.|  +..+=|++.+
T Consensus       230 ~~~~~g~~~e~~~kai~~G--I~KiNi~T~l  258 (307)
T PRK05835        230 LKGSKGVPFEFLQESVKGG--INKVNTDTDL  258 (307)
T ss_pred             cccccCCCHHHHHHHHHcC--ceEEEeChHH
Confidence                      688888888  8999999877

>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport

Probab=96.30  E-value=0.025  Score=52.89  Aligned_cols=72  Identities=21%  Similarity=0.272  Sum_probs=49.3

Q ss_pred             HHHHHHHHcCCCEEEEeecCCccccCCCCH-HHHHHHhhc-CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhc
Q 021156          217 ERVLDFLASYADEFLVHGVDVEGKKLGIDD-ELVALLGKY-SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIF  294 (316)
Q Consensus       217 e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~-eli~~l~~~-~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~  294 (316)
                      +.+.++.+.|++.+.+-.+..+      ++ +.++.+++. .++|++++||| +++.+.++.+.|  ++++++|+..  |
T Consensus       194 eea~~A~~~gaD~I~ld~~~p~------~l~~~~~~~~~~~~~i~i~AsGGI-~~~ni~~~~~~G--vd~I~vsai~--~  262 (272)
T cd01573         194 EEALAAAEAGADILQLDKFSPE------ELAELVPKLRSLAPPVLLAAAGGI-NIENAAAYAAAG--ADILVTSAPY--Y  262 (272)
T ss_pred             HHHHHHHHcCCCEEEECCCCHH------HHHHHHHHHhccCCCceEEEECCC-CHHHHHHHHHcC--CcEEEEChhh--c
Confidence            5566677899997765444332      22 234434433 37999999999 889999999998  9999666554  4


Q ss_pred             cCccc
Q 021156          295 GGNLA  299 (316)
Q Consensus       295 ~g~~~  299 (316)
                      ..+++
T Consensus       263 a~~~D  267 (272)
T cd01573         263 AKPAD  267 (272)
T ss_pred             Ccccc
Confidence            44443

In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.

>PRK08745 ribulose-phosphate 3-epimerase; Provisional

Probab=96.27  E-value=0.026  Score=51.36  Aligned_cols=35  Identities=31%  Similarity=0.530  Sum_probs=32.3

Q ss_pred             CCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecC
Q 021156          133 PGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNN  167 (316)
Q Consensus       133 ~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~  167 (316)
                      +..++|+|||+.+.+..+.++|||.+|+||+.++.
T Consensus       171 ~~~IeVDGGI~~eti~~l~~aGaDi~V~GSaiF~~  205 (223)
T PRK08745        171 PIRLEIDGGVKADNIGAIAAAGADTFVAGSAIFNA  205 (223)
T ss_pred             CeeEEEECCCCHHHHHHHHHcCCCEEEEChhhhCC
Confidence            46799999999999999999999999999999864

>TIGR01163 rpe ribulose-phosphate 3-epimerase

Probab=96.27  E-value=0.013  Score=51.82  Aligned_cols=34  Identities=32%  Similarity=0.501  Sum_probs=32.0

Q ss_pred             CcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecC
Q 021156          134 GGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNN  167 (316)
Q Consensus       134 ~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~  167 (316)
                      +|+.++|||+.+++.++++.|||.+++||+.++.
T Consensus       166 ~~i~v~GGI~~env~~l~~~gad~iivgsai~~~  199 (210)
T TIGR01163       166 ILIEVDGGVNDDNARELAEAGADILVAGSAIFGA  199 (210)
T ss_pred             ceEEEECCcCHHHHHHHHHcCCCEEEEChHHhCC
Confidence            7899999999999999999999999999999874

This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.

>PRK08005 epimerase; Validated

Probab=96.26  E-value=0.022  Score=51.27  Aligned_cols=73  Identities=16%  Similarity=0.129  Sum_probs=47.1

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCC---cccHHHHHHHH---HhC--CCcEEEecCCCHHHHHHHHHcCCCEEEeCCeee
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGAD---PLSKAAAIEAL---HAY--PGGLQVGGGINSDNSLSYIEEGATHVIVTSYVF  165 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~---~~~~~~i~~~v---~~~--~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~  165 (316)
                      .|++..+.+... ++.+.+.-.+-+   +.-.+.+.+.+   ++.  ...++|+|||+.+.+..+.++|||.+|+||+.+
T Consensus       117 Tp~~~i~~~l~~-vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~~~~~I~VDGGI~~~~i~~l~~aGad~~V~GsaiF  195 (210)
T PRK08005        117 TPLLPYRYLALQ-LDALMIMTSEPDGRGQQFIAAMCEKVSQSREHFPAAECWADGGITLRAARLLAAAGAQHLVIGRALF  195 (210)
T ss_pred             CCHHHHHHHHHh-cCEEEEEEecCCCccceecHHHHHHHHHHHHhcccCCEEEECCCCHHHHHHHHHCCCCEEEEChHhh
Confidence            455555555432 555555555532   22222222222   221  236999999999999999999999999999999


Q ss_pred             cC
Q 021156          166 NN  167 (316)
Q Consensus       166 ~~  167 (316)
                      ++
T Consensus       196 ~~  197 (210)
T PRK08005        196 TT  197 (210)
T ss_pred             CC
Confidence            64

>PRK14057 epimerase; Provisional

Probab=96.25  E-value=0.03  Score=51.78  Aligned_cols=73  Identities=14%  Similarity=0.147  Sum_probs=49.9

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCC---cc----cHHHHH---HHHHh--CCCcEEEecCCCHHHHHHHHHcCCCEEEeC
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGAD---PL----SKAAAI---EALHA--YPGGLQVGGGINSDNSLSYIEEGATHVIVT  161 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~---~~----~~~~i~---~~v~~--~~~pl~vGGGIr~e~~~~~l~~Gad~VVig  161 (316)
                      .|++..+.+... ++.+-+.-.+-+   +.    ..+.+.   +...+  .+..|+|+|||+.+.+..+.++|||.+|.|
T Consensus       143 Tp~e~i~~~l~~-vD~VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~aGad~~V~G  221 (254)
T PRK14057        143 TPLDVIIPILSD-VEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQDQLPSLIAQGIDRVVSG  221 (254)
T ss_pred             CCHHHHHHHHHh-CCEEEEEEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHCCCCEEEEC
Confidence            466666666543 666666666633   21    122222   22222  246799999999999999999999999999


Q ss_pred             CeeecC
Q 021156          162 SYVFNN  167 (316)
Q Consensus       162 t~~~~~  167 (316)
                      |+.+++
T Consensus       222 SalF~~  227 (254)
T PRK14057        222 SALFRD  227 (254)
T ss_pred             hHhhCC
Confidence            999864

>PRK10550 tRNA-dihydrouridine synthase C; Provisional

Probab=96.23  E-value=0.015  Score=55.58  Aligned_cols=83  Identities=13%  Similarity=0.004  Sum_probs=62.3

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCC-----cc-cHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHH-cCCCEEEeCCeee
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGAD-----PL-SKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIE-EGATHVIVTSYVF  165 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~-----~~-~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~-~Gad~VVigt~~~  165 (316)
                      +..++++.+.++|++.++|--=...     +. +.+.+.++.+.+++|++.-|||+ .+|++++++ .|||.|.||..++
T Consensus       149 ~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~l  228 (312)
T PRK10550        149 RKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGAL  228 (312)
T ss_pred             HHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHhH
Confidence            3568999999999887766311111     11 34444444456889999999998 599999885 7899999999999


Q ss_pred             cCCCCCHHHHHHHHH
Q 021156          166 NNGQMDLERLKDLVR  180 (316)
Q Consensus       166 ~~~~~~~eli~ei~~  180 (316)
                      .|    |.+++++..
T Consensus       229 ~n----P~lf~~~~~  239 (312)
T PRK10550        229 NI----PNLSRVVKY  239 (312)
T ss_pred             hC----cHHHHHhhc
Confidence            98    999998753

>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II

Probab=96.23  E-value=0.03  Score=53.30  Aligned_cols=71  Identities=17%  Similarity=0.151  Sum_probs=53.3

Q ss_pred             HHHHHHHHcCCCcceEEEecCCc----ccHHHHHHH-HHhCCCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeeecC
Q 021156           97 EFANLYKEDGLTGGHAIMLGADP----LSKAAAIEA-LHAYPGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFNN  167 (316)
Q Consensus        97 e~a~~~~~~G~~~l~lvDLda~~----~~~~~i~~~-v~~~~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~~~  167 (316)
                      +.|+...++|++.+.+-=-+++.    .....++.. .+.+++|++..|||.+ +++.+++..||+-|.+||.+...
T Consensus       120 ~~a~~a~~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iPviaaGGI~~~~~~~~al~~GA~gV~iGt~f~~t  196 (307)
T TIGR03151       120 ALAKRMEKAGADAVIAEGMESGGHIGELTTMALVPQVVDAVSIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFLCA  196 (307)
T ss_pred             HHHHHHHHcCCCEEEEECcccCCCCCCCcHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCCEeecchHHhcc
Confidence            57788888999987664444331    123333343 4467899999999985 88999999999999999998765

This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.

>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed

Probab=96.22  E-value=0.11  Score=47.39  Aligned_cols=189  Identities=10%  Similarity=0.008  Sum_probs=97.3

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCc--ccHHHHHHHHHhCCCcEEEecCC-----CH-HHHHHHHHcCCCEEEeCCeee
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADP--LSKAAAIEALHAYPGGLQVGGGI-----NS-DNSLSYIEEGATHVIVTSYVF  165 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~--~~~~~i~~~v~~~~~pl~vGGGI-----r~-e~~~~~l~~Gad~VVigt~~~  165 (316)
                      +..+..+...+.+....| +|+.-.-  .--..+++.+++.+.++..+--+     +. .-++.+.++||+.+.+-.+  
T Consensus        13 ~~~~~l~~~~~~~~~~~~-ikvg~~~f~~~G~~~i~~l~~~~~~i~~D~Kl~Di~~t~~~~i~~~~~~gad~itvH~~--   89 (230)
T PRK00230         13 SKEEALAFLDQLDPAVLF-VKVGMELFTAGGPQFVRELKQRGFKVFLDLKLHDIPNTVAKAVRALAKLGVDMVNVHAS--   89 (230)
T ss_pred             CHHHHHHHHHhcCCcccE-EEEcHHHHHhcCHHHHHHHHhcCCCEEEEeehhhccccHHHHHHHHHHcCCCEEEEccc--
Confidence            344555555556655444 5654220  11123445555444456666554     43 3477889999999988653  


Q ss_pred             cCCCCCHHHHHHHHHHhc--CceEEEeeeeeecCCeeEEEeCCcceec-ccCHHHHHHHHHHcCCCEEEEeecCCccccC
Q 021156          166 NNGQMDLERLKDLVRVVG--KQRLVLDLSCRKKDGKYAIVTDRWQKFS-DVYLDERVLDFLASYADEFLVHGVDVEGKKL  242 (316)
Q Consensus       166 ~~~~~~~eli~ei~~~~G--~~~IvvslD~k~~~g~~~v~~~gw~~~~-~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~  242 (316)
                      ..    .+.++...+.-.  ...-++.+++-.-.+.-.+. ..|.+.. .......++...+.|++.++...        
T Consensus        90 ag----~~~i~~~~~~~~~~~~~~~~~V~~lts~~~~~l~-~~~~~~~~~~~v~~~a~~a~~~g~dgvv~~~--------  156 (230)
T PRK00230         90 GG----PRMMKAAREALEPKSRPLLIAVTVLTSMDEEDLA-ELGINLSLEEQVLRLAKLAQEAGLDGVVCSA--------  156 (230)
T ss_pred             CC----HHHHHHHHHHhhccCCCeEEEEEECCCCCHHHHH-hCcCCCCHHHHHHHHHHHHHHcCCeEEEeCh--------
Confidence            32    666777665431  11234566543100000000 0011000 00122345566677777664321        


Q ss_pred             CCCHHHHHHHhhcCCCcEEEEeCCCCHH-----------HHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHH
Q 021156          243 GIDDELVALLGKYSPIPVTYAGGVTTMA-----------DLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAW  306 (316)
Q Consensus       243 G~d~eli~~l~~~~~iPVIasGGI~s~e-----------Di~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~  306 (316)
                       .....++++.  .+-.+++.+||+ ++           ....+.+.|  +++++|||++  |+.+=+.+.+.++
T Consensus       157 -~~~~~ir~~~--~~~~~~v~pGI~-~~g~~~~dq~~~~~~~~ai~~G--ad~iVvGR~I--~~a~dP~~~a~~i  223 (230)
T PRK00230        157 -QEAAAIREAT--GPDFLLVTPGIR-PAGSDAGDQKRVMTPAQAIAAG--SDYIVVGRPI--TQAADPAAAYEAI  223 (230)
T ss_pred             -HHHHHHHhhc--CCceEEEcCCcC-CCCCCcchHHHHhCHHHHHHcC--CCEEEECCcc--cCCCCHHHHHHHH
Confidence             1123344442  233567888887 33           577777777  8999999999  7655444444333

>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed

Probab=96.21  E-value=0.25  Score=46.62  Aligned_cols=152  Identities=18%  Similarity=0.138  Sum_probs=96.7

Q ss_pred             HHHhCCCcE--EEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeC
Q 021156          128 ALHAYPGGL--QVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTD  205 (316)
Q Consensus       128 ~v~~~~~pl--~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~  205 (316)
                      ..++..+|+  ..+=|-..+.+++++++|.+.|.++...+.- +=|.+..+++++...  ..-+++-.-       +-.-
T Consensus        69 ~a~~~~VPValHLDH~~~~e~i~~ai~~GftSVMiDgS~lp~-eeNi~~T~~vv~~Ah--~~gvsVEaE-------lG~i  138 (284)
T PRK12737         69 AARKYNIPLALHLDHHEDLDDIKKKVRAGIRSVMIDGSHLSF-EENIAIVKEVVEFCH--RYDASVEAE-------LGRL  138 (284)
T ss_pred             HHHHCCCCEEEECCCCCCHHHHHHHHHcCCCeEEecCCCCCH-HHHHHHHHHHHHHHH--HcCCEEEEE-------Eeec
Confidence            334455554  4455556799999999999999997665532 002445555544321  111344321       1111


Q ss_pred             Cccee---------cccCHHHHHHHHHHcCCCEEEEeecCCccccCC---CCHHHHHHHhhcCCCcEEEEeCCCCHH-HH
Q 021156          206 RWQKF---------SDVYLDERVLDFLASYADEFLVHGVDVEGKKLG---IDDELVALLGKYSPIPVTYAGGVTTMA-DL  272 (316)
Q Consensus       206 gw~~~---------~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G---~d~eli~~l~~~~~iPVIasGGI~s~e-Di  272 (316)
                      |..+.         .--++.+..+...+.|++.+-+.-=+.-|.+.+   .|+++++++.+.+++|+..-||=+.++ ++
T Consensus       139 gg~e~~~~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~iPLVlHGgSG~~~e~~  218 (284)
T PRK12737        139 GGQEDDLVVDEKDAMYTNPDAAAEFVERTGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKVSIPLVLHGASGVPDEDV  218 (284)
T ss_pred             cCccCCcccccccccCCCHHHHHHHHHHhCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHH
Confidence            11111         012577777777789999775433244555544   499999999999999999988876654 56


Q ss_pred             HHHHHhCCCcCEEEEccch
Q 021156          273 EKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       273 ~~l~~~G~g~~gVivG~Al  291 (316)
                      +++.+.|  +..+=|++.+
T Consensus       219 ~kai~~G--i~KiNi~T~l  235 (284)
T PRK12737        219 KKAISLG--ICKVNVATEL  235 (284)
T ss_pred             HHHHHCC--CeEEEeCcHH
Confidence            7788888  9999999987

>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain

Probab=96.19  E-value=0.011  Score=56.69  Aligned_cols=83  Identities=17%  Similarity=0.032  Sum_probs=59.7

Q ss_pred             CHHHHHHHHHHcCCCcceEEE--ecC-----C-cc-cHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHcC-CCEEEeCC
Q 021156           94 SAAEFANLYKEDGLTGGHAIM--LGA-----D-PL-SKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEEG-ATHVIVTS  162 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvD--Lda-----~-~~-~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~G-ad~VVigt  162 (316)
                      +.+++++.+++.|++.+++.-  ...     . .. ......++.+.+++||..+|||+ .++++++++.| ||.|-+|.
T Consensus       242 e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~gR  321 (336)
T cd02932         242 DSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEAGIPVIAVGLITDPEQAEAILESGRADLVALGR  321 (336)
T ss_pred             HHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHcCCCCeehhhH
Confidence            345788888888888776530  000     0 11 12233333345789999999998 59999999998 99999999


Q ss_pred             eeecCCCCCHHHHHHHHH
Q 021156          163 YVFNNGQMDLERLKDLVR  180 (316)
Q Consensus       163 ~~~~~~~~~~eli~ei~~  180 (316)
                      .++.|    |+++.++.+
T Consensus       322 ~~i~d----P~~~~k~~~  335 (336)
T cd02932         322 ELLRN----PYWPLHAAA  335 (336)
T ss_pred             HHHhC----ccHHHHHhh
Confidence            99998    999887754

YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.

>PRK05581 ribulose-phosphate 3-epimerase; Validated

Probab=96.16  E-value=0.021  Score=50.94  Aligned_cols=34  Identities=38%  Similarity=0.472  Sum_probs=31.1

Q ss_pred             CcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecC
Q 021156          134 GGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNN  167 (316)
Q Consensus       134 ~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~  167 (316)
                      .++.++|||+.+++.++.+.|+|.|++||+.+++
T Consensus       171 ~~i~v~GGI~~~nv~~l~~~GaD~vvvgSai~~~  204 (220)
T PRK05581        171 ILIEVDGGINADNIKECAEAGADVFVAGSAVFGA  204 (220)
T ss_pred             ceEEEECCCCHHHHHHHHHcCCCEEEEChhhhCC
Confidence            4578999999999999999999999999999975

>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=96.14  E-value=0.065  Score=50.32  Aligned_cols=66  Identities=21%  Similarity=0.235  Sum_probs=52.6

Q ss_pred             HHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhc
Q 021156          217 ERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIF  294 (316)
Q Consensus       217 e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~  294 (316)
                      +.++++.+.|++.+.+   +      ....+.++++.+..  ++|+.++||| +.+.+.++.+.|  ++++.+|+-.  |
T Consensus       199 eea~~A~~~gaDyI~l---D------~~~~e~l~~~~~~~~~~i~i~AiGGI-t~~ni~~~a~~G--vd~IAvg~l~--~  264 (277)
T PRK08072        199 EQVREAVAAGADIIMF---D------NRTPDEIREFVKLVPSAIVTEASGGI-TLENLPAYGGTG--VDYISLGFLT--H  264 (277)
T ss_pred             HHHHHHHHcCCCEEEE---C------CCCHHHHHHHHHhcCCCceEEEECCC-CHHHHHHHHHcC--CCEEEEChhh--c
Confidence            5677888999998876   1      14557778877654  4778899999 789999999998  9999999877  6


Q ss_pred             cC
Q 021156          295 GG  296 (316)
Q Consensus       295 ~g  296 (316)
                      ..
T Consensus       265 sa  266 (277)
T PRK08072        265 SV  266 (277)
T ss_pred             CC
Confidence            43

>PRK13125 trpA tryptophan synthase subunit alpha; Provisional

Probab=96.13  E-value=0.031  Score=51.34  Aligned_cols=34  Identities=24%  Similarity=0.355  Sum_probs=31.0

Q ss_pred             CCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeec
Q 021156          133 PGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus       133 ~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      ..|+++||||+ .++++.+.++|||.+|+||+.++
T Consensus       185 ~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGSai~~  219 (244)
T PRK13125        185 NKYLVVGFGLDSPEDARDALSAGADGVVVGTAFIE  219 (244)
T ss_pred             CCCEEEeCCcCCHHHHHHHHHcCCCEEEECHHHHH
Confidence            47899999996 69999999999999999999875

>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype

Probab=96.13  E-value=0.12  Score=49.90  Aligned_cols=150  Identities=11%  Similarity=0.032  Sum_probs=94.5

Q ss_pred             CcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCC------CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEE-e--
Q 021156          134 GGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQ------MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIV-T--  204 (316)
Q Consensus       134 ~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~------~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~-~--  204 (316)
                      +-+-.+=|-..+.+.+.+++|.+.|.++...+.+.+      =|.+..+++++...+-  -+++-.-.  |  .+. .  
T Consensus        76 ValHLDHg~~~e~i~~Ai~~GFtSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~--GvsVEaEL--G--~igg~e~  149 (347)
T TIGR01521        76 VVMHQDHGNSPATCQRAIQLGFTSVMMDGSLREDAKTPADYDYNVRVTAEVVAFAHAV--GASVEGEL--G--CLGSLET  149 (347)
T ss_pred             EEEECCCCCCHHHHHHHHHcCCCEEeecCcCCcccCCCCCHHHHHHHHHHHHHHHHHc--CCeEEEEe--e--ecccccc
Confidence            334556666679999999999999999766542100      0255555555443111  13333210  1  111 0  


Q ss_pred             ------CC--cce-----ecccCHHHHHHHHHHcCCCEEEEeecCCccccCC--------CCHHHHHHHhhcC-CCcEEE
Q 021156          205 ------DR--WQK-----FSDVYLDERVLDFLASYADEFLVHGVDVEGKKLG--------IDDELVALLGKYS-PIPVTY  262 (316)
Q Consensus       205 ------~g--w~~-----~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G--------~d~eli~~l~~~~-~iPVIa  262 (316)
                            .+  ...     ..--++.+..+...+.|++.+-+--=+.-|.+.+        .|++.++++.+.+ ++|+..
T Consensus       150 ~~~g~~d~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v~~vPLVL  229 (347)
T TIGR01521       150 GMGEAEDGHGFEGVLDHSQLLTDPEEAADFVKKTKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHARLPDTHLVM  229 (347)
T ss_pred             cccccccCcccccccchhhcCCCHHHHHHHHHHHCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHccCCCCCEEE
Confidence                  00  000     0012566666667778999764322233344433        6999999999988 799999


Q ss_pred             EeCCCCH----------------------HHHHHHHHhCCCcCEEEEccch
Q 021156          263 AGGVTTM----------------------ADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       263 sGGI~s~----------------------eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      -||=+.+                      +++.++.+.|  +..|=|++.+
T Consensus       230 HGgSG~p~~~~~~~~~~~~~~~~~~g~p~e~i~~ai~~G--I~KVNi~Tdl  278 (347)
T TIGR01521       230 HGSSSVPQEWLDIINEYGGEIKETYGVPVEEIVEGIKYG--VRKVNIDTDL  278 (347)
T ss_pred             eCCCCCchHhhHHHHhhcccccccCCCCHHHHHHHHHCC--CeeEEeChHH
Confidence            9998765                      8899999998  9999999877

Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.

>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate

Probab=96.13  E-value=0.2  Score=47.36  Aligned_cols=151  Identities=15%  Similarity=0.166  Sum_probs=96.9

Q ss_pred             HHhCCCcE--EEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHH---HhcCceEEEeeeeeecCCeeEEE
Q 021156          129 LHAYPGGL--QVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVR---VVGKQRLVLDLSCRKKDGKYAIV  203 (316)
Q Consensus       129 v~~~~~pl--~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~---~~G~~~IvvslD~k~~~g~~~v~  203 (316)
                      .+...+|+  ..+=|-..+.+++++++|.+.|.++...+.- +=|....+++++   .+|     +++-.-.  |  .+.
T Consensus        69 a~~~~vPValHLDH~~~~e~i~~ai~~GftSVM~DgS~l~~-eeNi~~T~~vv~~ah~~g-----v~VEaEl--G--~i~  138 (287)
T PF01116_consen   69 AEEASVPVALHLDHGKDFEDIKRAIDAGFTSVMIDGSALPF-EENIAITREVVEYAHAYG-----VSVEAEL--G--HIG  138 (287)
T ss_dssp             HHHSTSEEEEEEEEE-SHHHHHHHHHHTSSEEEEE-TTS-H-HHHHHHHHHHHHHHHHTT------EEEEEE--S--BSS
T ss_pred             HHHcCCCEEeecccCCCHHHHHHHHHhCcccccccCCcCCH-HHHHHHHHHHHHhhhhhC-----CEEEEEe--e--eee
Confidence            34455665  5566666799999999999999996654431 002444444443   444     3333211  1  111


Q ss_pred             e-CCccee------cccCHHHHHHHHHHcCCCEEEEeecCCccccCC-----CCHHHHHHHhhcC-CCcEEEEeCCCCHH
Q 021156          204 T-DRWQKF------SDVYLDERVLDFLASYADEFLVHGVDVEGKKLG-----IDDELVALLGKYS-PIPVTYAGGVTTMA  270 (316)
Q Consensus       204 ~-~gw~~~------~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G-----~d~eli~~l~~~~-~iPVIasGGI~s~e  270 (316)
                      . ......      .--++.+..+...+.|++.+-+.-=+.-|.+.+     .|+++++++.+.+ ++|+..-||=+.++
T Consensus       139 g~ed~~~~~~~~~~~~TdP~~a~~Fv~~TgvD~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~~~iPLVlHGgSG~~~  218 (287)
T PF01116_consen  139 GKEDGIESEEETESLYTDPEEAKEFVEETGVDALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAVPDIPLVLHGGSGLPD  218 (287)
T ss_dssp             SSCTTCSSSTT-TTCSSSHHHHHHHHHHHTTSEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHHHTSEEEESSCTTS-H
T ss_pred             ccCCCccccccccccccCHHHHHHHHHHhCCCEEEEecCccccccCCCCCcccCHHHHHHHHHhcCCCCEEEECCCCCCH
Confidence            0 011000      112677777777899999876544466677766     4899999999998 99999999988776


Q ss_pred             -HHHHHHHhCCCcCEEEEccch
Q 021156          271 -DLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       271 -Di~~l~~~G~g~~gVivG~Al  291 (316)
                       ++.++.+.|  +..+=+++.+
T Consensus       219 e~~~~ai~~G--i~KiNi~T~~  238 (287)
T PF01116_consen  219 EQIRKAIKNG--ISKINIGTEL  238 (287)
T ss_dssp             HHHHHHHHTT--EEEEEESHHH
T ss_pred             HHHHHHHHcC--ceEEEEehHH
Confidence             788999988  9999999988

There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....

>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]

Probab=96.12  E-value=0.018  Score=52.30  Aligned_cols=187  Identities=20%  Similarity=0.120  Sum_probs=100.6

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCC------------cccHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEe
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGAD------------PLSKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIV  160 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~------------~~~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVi  160 (316)
                      +| |.|+.-+++|+-  -+.-|+.-            ..+...+.++..++.+|+..=--|- .-+++-+-..|+|.+= 
T Consensus        29 n~-EQA~IAE~aGAv--AVMaLervPaDiR~aGGVaRMaDp~~i~eim~aVsIPVMAKvRIGH~~EA~iLealgVD~ID-  104 (296)
T COG0214          29 NA-EQARIAEEAGAV--AVMALERVPADIRAAGGVARMADPKMIEEIMDAVSIPVMAKVRIGHFVEAQILEALGVDMID-  104 (296)
T ss_pred             CH-HHHHHHHhcCce--eEeehhhCcHHHHhccCccccCCHHHHHHHHHhcccceeeeeecchhHHHHHHHHhCCCccc-
Confidence            45 488888888855  34444421            1345556666678999999888885 6667777778999752 


Q ss_pred             CCeeecCCCCCHHHHHHHH-HHhcCceEEEeeeeee--------cCCeeEEEeCCcceecccCHHHHHHHHHHcC--CCE
Q 021156          161 TSYVFNNGQMDLERLKDLV-RVVGKQRLVLDLSCRK--------KDGKYAIVTDRWQKFSDVYLDERVLDFLASY--ADE  229 (316)
Q Consensus       161 gt~~~~~~~~~~eli~ei~-~~~G~~~IvvslD~k~--------~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~G--a~~  229 (316)
                      -|+.+.-    .+..-.+- +.|-   +-+-+-+|.        .+|--.++++|-- .++ +..+..+.+....  ++.
T Consensus       105 ESEVLTP----AD~~~Hi~K~~Ft---VPFVcGarnLgEAlRRI~EGAaMIRTKGEa-GTG-nv~eAVrHmr~i~~eI~~  175 (296)
T COG0214         105 ESEVLTP----ADEEFHINKWKFT---VPFVCGARNLGEALRRISEGAAMIRTKGEA-GTG-NVVEAVRHMRKINGEIRR  175 (296)
T ss_pred             cccccCC----Cchhhhcchhhcc---cceecCcCcHHHHHHHHhhhHHHHhcCCCC-CCC-cHHHHHHHHHHHHHHHHH
Confidence            1222220    00000000 1110   000000010        0111123333321 122 3334333322211  111


Q ss_pred             EEEeecCCcc-----ccCCCCHHHHHHHhhcCCCcE--EEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCc
Q 021156          230 FLVHGVDVEG-----KKLGIDDELVALLGKYSPIPV--TYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGN  297 (316)
Q Consensus       230 ilvtdi~~dG-----~~~G~d~eli~~l~~~~~iPV--IasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~  297 (316)
                        +...+.|-     ..-+..+++++.+++.-..||  +++|||.|+.|..-+..+|  ++||.|||.+|--++|
T Consensus       176 --l~~~~edel~~~Ak~~~~p~elv~~~~~~grLPVvnFAAGGvATPADAALMM~LG--adGVFVGSGIFKS~~P  246 (296)
T COG0214         176 --LQSMTEDELYVVAKELQAPYELVKEVAKLGRLPVVNFAAGGVATPADAALMMQLG--ADGVFVGSGIFKSSNP  246 (296)
T ss_pred             --HHccCHHHHHHHHHHhCChHHHHHHHHHhCCCCeEeecccCcCChhHHHHHHHhC--CCeEEecccccCCCCH
Confidence              12222221     113457789999988767776  7999999999999999999  9999999999444443

>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated

Probab=96.11  E-value=0.022  Score=56.38  Aligned_cols=86  Identities=19%  Similarity=0.196  Sum_probs=61.1

Q ss_pred             cCHHHHHHHHHHcCCCcceE---------EEecC---------C--------ccc---HHHHHHHH-HhC---CCcEEEe
Q 021156           93 KSAAEFANLYKEDGLTGGHA---------IMLGA---------D--------PLS---KAAAIEAL-HAY---PGGLQVG  139 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~l---------vDLda---------~--------~~~---~~~i~~~v-~~~---~~pl~vG  139 (316)
                      .+..++|+...++|++++-+         +|++.         .        +..   ....+..+ +.+   ++||+--
T Consensus       180 ~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~  259 (420)
T PRK08318        180 TDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISGI  259 (420)
T ss_pred             ccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEee
Confidence            46778999999999999885         55431         0        111   12233333 344   6899999


Q ss_pred             cCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHH
Q 021156          140 GGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRV  181 (316)
Q Consensus       140 GGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~  181 (316)
                      |||. .+|+.+++.+||+-|-|+|+++.+|   |+.+.++.+.
T Consensus       260 GGI~s~~da~e~i~aGA~~Vqi~ta~~~~g---p~ii~~I~~~  299 (420)
T PRK08318        260 GGIETWRDAAEFILLGAGTVQVCTAAMQYG---FRIVEDMISG  299 (420)
T ss_pred             cCcCCHHHHHHHHHhCCChheeeeeeccCC---chhHHHHHHH
Confidence            9998 4999999999999999999998852   6555555543

>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain

Probab=96.09  E-value=0.019  Score=55.69  Aligned_cols=71  Identities=20%  Similarity=0.164  Sum_probs=52.2

Q ss_pred             HHHHHHHHcCCCcceEEEe-----cCCcccHHHHHHHHHhC--CCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeeecC
Q 021156           97 EFANLYKEDGLTGGHAIML-----GADPLSKAAAIEALHAY--PGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFNN  167 (316)
Q Consensus        97 e~a~~~~~~G~~~l~lvDL-----da~~~~~~~i~~~v~~~--~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~~~  167 (316)
                      +.|+...+.|++++.+.+=     |+.+.....+.++.+.+  .+||++.||||. .|+.+++..||+-|-+|+.++..
T Consensus       233 ~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~dGGIr~g~Di~kaLalGA~~V~iGr~~l~~  311 (351)
T cd04737         233 EDADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKALASGADAVAVGRPVLYG  311 (351)
T ss_pred             HHHHHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHH
Confidence            5778888899998777532     22222233344444444  599999999995 99999999999999999987763

LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>PRK00507 deoxyribose-phosphate aldolase; Provisional

Probab=96.09  E-value=0.11  Score=47.13  Aligned_cols=128  Identities=18%  Similarity=0.144  Sum_probs=74.4

Q ss_pred             HHHHHHHHcCCCE--EEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH
Q 021156          145 DNSLSYIEEGATH--VIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF  222 (316)
Q Consensus       145 e~~~~~l~~Gad~--VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~  222 (316)
                      .+++.+++.||+-  +|++-..++.|.+ ....+++.+..  +.. ..+-+|      .+.-.+-...  -.....++.+
T Consensus        78 ~e~~~Ai~~GA~EiD~Vin~~~~~~g~~-~~v~~ei~~v~--~~~-~~~~lK------vIlEt~~L~~--e~i~~a~~~~  145 (221)
T PRK00507         78 FEAKDAIANGADEIDMVINIGALKSGDW-DAVEADIRAVV--EAA-GGAVLK------VIIETCLLTD--EEKVKACEIA  145 (221)
T ss_pred             HHHHHHHHcCCceEeeeccHHHhcCCCH-HHHHHHHHHHH--Hhc-CCceEE------EEeecCcCCH--HHHHHHHHHH
Confidence            6688889999985  5666555554332 22223332211  100 111122      1111221111  1346677788


Q ss_pred             HHcCCCEEEEeecCCccccCCCCHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          223 LASYADEFLVHGVDVEGKKLGIDDELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       223 ~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      .+.|++ ++-|+-.-.  ..|...+.++.+++..  .++|.++|||++.+|+.+++++|  +  -.||++-
T Consensus       146 ~~agad-fIKTsTG~~--~~gat~~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i~aG--A--~riGtS~  209 (221)
T PRK00507        146 KEAGAD-FVKTSTGFS--TGGATVEDVKLMRETVGPRVGVKASGGIRTLEDALAMIEAG--A--TRLGTSA  209 (221)
T ss_pred             HHhCCC-EEEcCCCCC--CCCCCHHHHHHHHHHhCCCceEEeeCCcCCHHHHHHHHHcC--c--ceEccCc
Confidence            899999 444443221  2455777777776654  48999999999999999999998  5  3455443

>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes

Probab=96.08  E-value=0.065  Score=50.04  Aligned_cols=66  Identities=17%  Similarity=0.246  Sum_probs=52.8

Q ss_pred             HHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhc
Q 021156          217 ERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIF  294 (316)
Q Consensus       217 e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~  294 (316)
                      +.++++.+.|++.+.+-.+         ..+.++++.+..  ++|+.++||| +.+.+.++.+.|  ++++.+|+..  |
T Consensus       193 eea~~A~~~gaDyI~ld~~---------~~e~l~~~~~~~~~~ipi~AiGGI-~~~ni~~~a~~G--vd~Iav~sl~--~  258 (268)
T cd01572         193 EQLKEALEAGADIIMLDNM---------SPEELREAVALLKGRVLLEASGGI-TLENIRAYAETG--VDYISVGALT--H  258 (268)
T ss_pred             HHHHHHHHcCCCEEEECCc---------CHHHHHHHHHHcCCCCcEEEECCC-CHHHHHHHHHcC--CCEEEEEeee--c
Confidence            6677888999998876332         357777776654  5899999999 589999999998  9999999988  6


Q ss_pred             cC
Q 021156          295 GG  296 (316)
Q Consensus       295 ~g  296 (316)
                      ..
T Consensus       259 ~a  260 (268)
T cd01572         259 SA  260 (268)
T ss_pred             CC
Confidence            43

It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.

>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional

Probab=96.07  E-value=0.036  Score=52.88  Aligned_cols=76  Identities=13%  Similarity=0.218  Sum_probs=51.2

Q ss_pred             ecCCccCHHHHHHHHHHcCCCcceEEEec---CC--cccHHHHHH-HHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEe
Q 021156           88 NFESDKSAAEFANLYKEDGLTGGHAIMLG---AD--PLSKAAAIE-ALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIV  160 (316)
Q Consensus        88 ~~~~~~~p~e~a~~~~~~G~~~l~lvDLd---a~--~~~~~~i~~-~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVi  160 (316)
                      +|+ .+||. .|+.+++.|+  .-+--|-   +.  ...++..++ .+...++|+.+|+||. .+|+..+++.|||-|.+
T Consensus       202 ~yc-~~d~~-~a~~l~~~g~--~avmPl~~pIGsg~gv~~p~~i~~~~e~~~vpVivdAGIg~~sda~~AmelGadgVL~  277 (326)
T PRK11840        202 VYC-SDDPI-AAKRLEDAGA--VAVMPLGAPIGSGLGIQNPYTIRLIVEGATVPVLVDAGVGTASDAAVAMELGCDGVLM  277 (326)
T ss_pred             EEe-CCCHH-HHHHHHhcCC--EEEeeccccccCCCCCCCHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence            444 24665 6666776665  1122222   11  122444444 4456789999999997 59999999999999999


Q ss_pred             CCeeecC
Q 021156          161 TSYVFNN  167 (316)
Q Consensus       161 gt~~~~~  167 (316)
                      +|+..+.
T Consensus       278 nSaIa~a  284 (326)
T PRK11840        278 NTAIAEA  284 (326)
T ss_pred             cceeccC
Confidence            9998754

>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain

Probab=96.04  E-value=0.024  Score=53.55  Aligned_cols=46  Identities=13%  Similarity=0.089  Sum_probs=40.9

Q ss_pred             CCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeeec-CCCCCHHHHHHHHHHh
Q 021156          133 PGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFN-NGQMDLERLKDLVRVV  182 (316)
Q Consensus       133 ~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~~-~~~~~~eli~ei~~~~  182 (316)
                      .+||+.-|||.+ +|+.+++.+||+-|-++|.++. +    |..+.++.+.+
T Consensus       243 ~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta~~~~g----p~~~~~i~~~L  290 (294)
T cd04741         243 EIQIIGVGGVLDGRGAFRMRLAGASAVQVGTALGKEG----PKVFARIEKEL  290 (294)
T ss_pred             CCCEEEeCCCCCHHHHHHHHHcCCCceeEchhhhhcC----chHHHHHHHHH
Confidence            499999999985 9999999999999999999985 5    99999887765

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional

Probab=96.01  E-value=0.12  Score=49.88  Aligned_cols=150  Identities=11%  Similarity=0.084  Sum_probs=94.1

Q ss_pred             CcE--EEecCCCHHHHHHHHHcCCCEEEeCCeeecCCC----C--CHHHHHHHHHHhcCceEEEeeeeeecCCeeEEE-e
Q 021156          134 GGL--QVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQ----M--DLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIV-T  204 (316)
Q Consensus       134 ~pl--~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~----~--~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~-~  204 (316)
                      +|+  -.+=|-..+.+++.+++|.+.|.++...+.||+    +  |.+..+++++...  ..-+++-.-.  |  .+. .
T Consensus        76 VPVaLHLDHg~~~e~i~~Ai~~GFtSVMiDgS~l~~~~~~~~~eeNI~~Trevve~Ah--~~GvsVEaEL--G--~igg~  149 (347)
T PRK13399         76 IPICLHQDHGNSPATCQSAIRSGFTSVMMDGSLLADGKTPASYDYNVDVTRRVTEMAH--AVGVSVEGEL--G--CLGSL  149 (347)
T ss_pred             CcEEEECCCCCCHHHHHHHHhcCCCEEEEeCCCCCCCCCccCHHHHHHHHHHHHHHHH--HcCCeEEEEe--e--eccCc
Confidence            554  455565679999999999999999776443211    0  2666666665421  1113443311  1  111 0


Q ss_pred             --------CCcc-------eecccCHHHHHHHHHHcCCCEEEEeecCCccccCC--------CCHHHHHHHhhcC-CCcE
Q 021156          205 --------DRWQ-------KFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLG--------IDDELVALLGKYS-PIPV  260 (316)
Q Consensus       205 --------~gw~-------~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G--------~d~eli~~l~~~~-~iPV  260 (316)
                              .+..       +..--++.+..+...+.|++.+-+--=+.-|.+.+        .|++.++++.+.+ ++|+
T Consensus       150 e~~~~g~ed~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~~vPL  229 (347)
T PRK13399        150 ETGEAGEEDGVGAEGKLSHDQMLTDPDQAVDFVQRTGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARLPNTHL  229 (347)
T ss_pred             ccccccccCCccccccccccccCCCHHHHHHHHHHHCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhcCCCCE
Confidence                    0100       00012566666666678999763211123344432        6899999999888 7999


Q ss_pred             EEEeCCCCH----------------------HHHHHHHHhCCCcCEEEEccch
Q 021156          261 TYAGGVTTM----------------------ADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       261 IasGGI~s~----------------------eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      ..-||=+.+                      |+++++.+.|  +..|=|++-+
T Consensus       230 VLHGgSGvp~~~~~~~~~~g~~~~~~~g~~~e~~~kai~~G--I~KINi~Tdl  280 (347)
T PRK13399        230 VMHGSSSVPQELQEIINAYGGKMKETYGVPVEEIQRGIKHG--VRKVNIDTDI  280 (347)
T ss_pred             EEeCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCC--CeEEEeChHH
Confidence            999998765                      7889999998  9999999866

>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=95.99  E-value=0.078  Score=50.07  Aligned_cols=68  Identities=13%  Similarity=0.198  Sum_probs=51.4

Q ss_pred             HHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhh-----cCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccc
Q 021156          216 DERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGK-----YSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSA  290 (316)
Q Consensus       216 ~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~-----~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~A  290 (316)
                      .+.+.++.+.|++.|.+-         ..+.+.++++.+     ..++|+.++||| +.+.+.++.+.|  ++.+.+|+.
T Consensus       206 leea~eA~~~GaD~I~LD---------n~~~e~l~~av~~~~~~~~~i~leAsGGI-t~~ni~~ya~tG--vD~Isvgsl  273 (288)
T PRK07428        206 LEQVQEALEYGADIIMLD---------NMPVDLMQQAVQLIRQQNPRVKIEASGNI-TLETIRAVAETG--VDYISSSAP  273 (288)
T ss_pred             HHHHHHHHHcCCCEEEEC---------CCCHHHHHHHHHHHHhcCCCeEEEEECCC-CHHHHHHHHHcC--CCEEEEchh
Confidence            467778889999987643         223344444433     357899999999 689999999998  999999999


Q ss_pred             hhhccCc
Q 021156          291 LDIFGGN  297 (316)
Q Consensus       291 l~~~~g~  297 (316)
                      +  |.-+
T Consensus       274 ~--~sa~  278 (288)
T PRK07428        274 I--TRSP  278 (288)
T ss_pred             h--hCCC
Confidence            8  7443

>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated

Probab=95.99  E-value=0.042  Score=54.56  Aligned_cols=75  Identities=16%  Similarity=0.112  Sum_probs=53.8

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCC--c-c-cHHHHHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecC
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGAD--P-L-SKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNN  167 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~--~-~-~~~~i~~~v~~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~  167 (316)
                      .++.+.++.+.+.|++.+.+----..  . . ....+.+.....++|+.+.|||+.+.+..++++||+.+++||..++.
T Consensus       118 ~t~~e~~~~a~~~GaD~I~~~pg~~~~~~~~~~~~~l~~l~~~~~iPI~a~GGI~~~n~~~~l~aGAdgv~vGsaI~~~  196 (430)
T PRK07028        118 PDPVKRAVELEELGVDYINVHVGIDQQMLGKDPLELLKEVSEEVSIPIAVAGGLDAETAAKAVAAGADIVIVGGNIIKS  196 (430)
T ss_pred             CCHHHHHHHHHhcCCCEEEEEeccchhhcCCChHHHHHHHHhhCCCcEEEECCCCHHHHHHHHHcCCCEEEEChHHcCC
Confidence            35677788888888887744321110  1 1 12334343345679999999999999999999999999999998865

>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=95.96  E-value=0.081  Score=49.68  Aligned_cols=68  Identities=15%  Similarity=0.154  Sum_probs=53.2

Q ss_pred             HHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhh
Q 021156          216 DERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDI  293 (316)
Q Consensus       216 ~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~  293 (316)
                      .+.+.++.+.|++.|.+ |        .+..+.++++.+..  ++|+.++||| +.+.+.++.+.|  ++++.+|+..  
T Consensus       199 leea~eA~~~gaD~I~L-D--------~~~~e~l~~~v~~~~~~i~leAsGGI-t~~ni~~~a~tG--vD~Isvg~lt--  264 (277)
T PRK05742        199 LDELRQALAAGADIVML-D--------ELSLDDMREAVRLTAGRAKLEASGGI-NESTLRVIAETG--VDYISIGAMT--  264 (277)
T ss_pred             HHHHHHHHHcCCCEEEE-C--------CCCHHHHHHHHHHhCCCCcEEEECCC-CHHHHHHHHHcC--CCEEEEChhh--
Confidence            46678888999998754 2        23556677666544  7899999999 589999999998  9999999877  


Q ss_pred             ccCc
Q 021156          294 FGGN  297 (316)
Q Consensus       294 ~~g~  297 (316)
                      |.-+
T Consensus       265 ~s~~  268 (277)
T PRK05742        265 KDVK  268 (277)
T ss_pred             cCCc
Confidence            6543

>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain

Probab=95.96  E-value=0.038  Score=54.38  Aligned_cols=75  Identities=23%  Similarity=0.252  Sum_probs=53.4

Q ss_pred             CHHHHHHHHHHcCCCEEEEeecCCcccc---------CCCC-HHHHHHHhhc-------CCCcEEEEeCCCCHHHHHHHH
Q 021156          214 YLDERVLDFLASYADEFLVHGVDVEGKK---------LGID-DELVALLGKY-------SPIPVTYAGGVTTMADLEKIK  276 (316)
Q Consensus       214 ~~~e~a~~~~~~Ga~~ilvtdi~~dG~~---------~G~d-~eli~~l~~~-------~~iPVIasGGI~s~eDi~~l~  276 (316)
                      +..+.++.+...|++.|.+-.-.- |+.         .|.. ...+.++.+.       .++|||++|||++..|+.+++
T Consensus       226 ~~~~~a~~~~~~g~D~I~VsG~~G-gtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~~i~viasGGI~~g~Dv~kal  304 (392)
T cd02808         226 GEGDIAAGVAAAGADFITIDGAEG-GTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKAL  304 (392)
T ss_pred             CHHHHHHHHHHcCCCEEEEeCCCC-CCCCCcccccccCCccHHHHHHHHHHHHHHcCCCCCCeEEEECCCCCHHHHHHHH
Confidence            355777777777799887544321 221         1332 2344444332       269999999999999999999


Q ss_pred             HhCCCcCEEEEccch
Q 021156          277 VAGIGRVDVTVGSAL  291 (316)
Q Consensus       277 ~~G~g~~gVivG~Al  291 (316)
                      .+|  +++|-+|+++
T Consensus       305 aLG--Ad~V~ig~~~  317 (392)
T cd02808         305 ALG--ADAVGIGTAA  317 (392)
T ss_pred             HcC--CCeeeechHH
Confidence            999  9999999998

GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.

>PLN02535 glycolate oxidase

Probab=95.94  E-value=0.023  Score=55.28  Aligned_cols=73  Identities=22%  Similarity=0.207  Sum_probs=51.9

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecC-----CcccHHHHHHHHHhC--CCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeee
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGA-----DPLSKAAAIEALHAY--PGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVF  165 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda-----~~~~~~~i~~~v~~~--~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~  165 (316)
                      +|. -|+...+.|++.+.+..-.+     .......+.++.+++  .+||++.||||. .|+.+++..||+.|.+|+.++
T Consensus       233 ~~~-dA~~a~~~GvD~I~vsn~GGr~~d~~~~t~~~L~ev~~av~~~ipVi~dGGIr~g~Dv~KALalGA~aV~vGr~~l  311 (364)
T PLN02535        233 TRE-DAIKAVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAVGGRVPVLLDGGVRRGTDVFKALALGAQAVLVGRPVI  311 (364)
T ss_pred             CHH-HHHHHHhcCCCEEEEeCCCcCCCCCChHHHHHHHHHHHHHhcCCCEEeeCCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence            454 47778888999775543222     111233344444443  599999999995 999999999999999999987


Q ss_pred             cC
Q 021156          166 NN  167 (316)
Q Consensus       166 ~~  167 (316)
                      ..
T Consensus       312 ~~  313 (364)
T PLN02535        312 YG  313 (364)
T ss_pred             hh
Confidence            64

>PRK06852 aldolase; Validated

Probab=95.93  E-value=0.14  Score=48.71  Aligned_cols=77  Identities=14%  Similarity=-0.046  Sum_probs=50.5

Q ss_pred             HHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcC-CCcEEEEeCCCC-HHHH----HHHHH-hCCCcCEEEEc
Q 021156          216 DERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYS-PIPVTYAGGVTT-MADL----EKIKV-AGIGRVDVTVG  288 (316)
Q Consensus       216 ~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~-~iPVIasGGI~s-~eDi----~~l~~-~G~g~~gVivG  288 (316)
                      .-.++...++|++.+= +.-..+  ..+-|.+.++++.+.+ ++||+++||=+. .+++    +.+++ .|  +.|+++|
T Consensus       191 a~aaRiaaELGADIVK-v~y~~~--~~~g~~e~f~~vv~~~g~vpVviaGG~k~~~~e~L~~v~~ai~~aG--a~Gv~~G  265 (304)
T PRK06852        191 AGAAGVAACLGADFVK-VNYPKK--EGANPAELFKEAVLAAGRTKVVCAGGSSTDPEEFLKQLYEQIHISG--ASGNATG  265 (304)
T ss_pred             HHHHHHHHHHcCCEEE-ecCCCc--CCCCCHHHHHHHHHhCCCCcEEEeCCCCCCHHHHHHHHHHHHHHcC--Cceeeec
Confidence            3446888899999653 222211  1124678888888877 899999999884 3333    33334 44  8999999


Q ss_pred             cchhhccCc
Q 021156          289 SALDIFGGN  297 (316)
Q Consensus       289 ~Al~~~~g~  297 (316)
                      |-+|-+.++
T Consensus       266 RNIfQ~~~p  274 (304)
T PRK06852        266 RNIHQKPLD  274 (304)
T ss_pred             hhhhcCCCc
Confidence            999444433

>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2

Probab=95.92  E-value=0.0076  Score=58.05  Aligned_cols=85  Identities=20%  Similarity=0.172  Sum_probs=62.9

Q ss_pred             CHHHHHHHHHHcCCCcceEEEec---------------CC---cccHHH---HHHHHH-hC--CCcEEEecCCC-HHHHH
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLG---------------AD---PLSKAA---AIEALH-AY--PGGLQVGGGIN-SDNSL  148 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLd---------------a~---~~~~~~---i~~~v~-~~--~~pl~vGGGIr-~e~~~  148 (316)
                      ++.++|+...+.|++++.+++--               ++   ....+.   .+..++ .+  .+||+.-|||. .+|+.
T Consensus       225 ~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~  304 (335)
T TIGR01036       225 DLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAELQGRLPIIGVGGISSAQDAL  304 (335)
T ss_pred             HHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHH
Confidence            68889999999999999987621               00   011122   223332 34  58999999998 59999


Q ss_pred             HHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHH
Q 021156          149 SYIEEGATHVIVTSYVFNNGQMDLERLKDLVRV  181 (316)
Q Consensus       149 ~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~  181 (316)
                      +++.+||+.|-++|+++.+   .|.++.++.+.
T Consensus       305 e~l~aGA~~Vqv~ta~~~~---Gp~~~~~i~~~  334 (335)
T TIGR01036       305 EKIRAGASLLQIYSGFIYW---GPPLVKEIVKE  334 (335)
T ss_pred             HHHHcCCcHHHhhHHHHHh---CchHHHHHHhh
Confidence            9999999999999999774   28888888653

The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.

>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid

Probab=95.91  E-value=0.088  Score=50.90  Aligned_cols=151  Identities=17%  Similarity=0.070  Sum_probs=101.6

Q ss_pred             CcEEEecCCC-H----HHHHHHHHcCCC--EEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCC
Q 021156          134 GGLQVGGGIN-S----DNSLSYIEEGAT--HVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDR  206 (316)
Q Consensus       134 ~pl~vGGGIr-~----e~~~~~l~~Gad--~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~g  206 (316)
                      +|+..-+|+. .    +.++++.+.|..  |+-+|....+.   +.+.++.+.+.+|+ .+.+.+|..          .+
T Consensus       131 v~~y~s~~~~~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~---d~~~v~air~~~g~-~~~l~vDaN----------~~  196 (355)
T cd03321         131 VQAYDSHGLDGAKLATERAVTAAEEGFHAVKTKIGYPTADE---DLAVVRSIRQAVGD-GVGLMVDYN----------QS  196 (355)
T ss_pred             eeEEEeCCCChHHHHHHHHHHHHHhhhHHHhhhcCCCChHh---HHHHHHHHHHhhCC-CCEEEEeCC----------CC
Confidence            4554444553 2    456677778865  44456432221   38899999999985 567788973          35


Q ss_pred             cceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEE
Q 021156          207 WQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVT  286 (316)
Q Consensus       207 w~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVi  286 (316)
                      |...   +..++++.+.+.++..+  -.     -..-.|++.++++++.+++||.+.-.+.+..++.++.+.+ .++.+.
T Consensus       197 ~~~~---~A~~~~~~l~~~~i~~i--Ee-----P~~~~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~-~~d~i~  265 (355)
T cd03321         197 LTVP---EAIERGQALDQEGLTWI--EE-----PTLQHDYEGHARIASALRTPVQMGENWLGPEEMFKALSAG-ACDLVM  265 (355)
T ss_pred             cCHH---HHHHHHHHHHcCCCCEE--EC-----CCCCcCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhC-CCCeEe
Confidence            6532   36677888888776533  11     1122488999999999999998888889999999999987 366666


Q ss_pred             EccchhhccCcccHHHHHHHHHhhc
Q 021156          287 VGSALDIFGGNLAYKDVVAWHAQQE  311 (316)
Q Consensus       287 vG~Al~~~~g~~~~~~~~~~~~~~~  311 (316)
                      +--..  .+|-....++.++++++.
T Consensus       266 ~~~~~--~GGit~~~~ia~~A~~~g  288 (355)
T cd03321         266 PDLMK--IGGVTGWLRASALAEQAG  288 (355)
T ss_pred             cCHhh--hCCHHHHHHHHHHHHHcC
Confidence            66555  666556666666666543

MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.

>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional

Probab=95.91  E-value=0.16  Score=45.33  Aligned_cols=134  Identities=13%  Similarity=0.086  Sum_probs=75.8

Q ss_pred             HHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcC
Q 021156          147 SLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASY  226 (316)
Q Consensus       147 ~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~G  226 (316)
                      ++.++++|||.|.+-.+.-.+   .++.+-+..+++| -++.+.++...         .+..+.....+...+....+.|
T Consensus        73 ~~~~~~~gad~vtvh~e~g~~---~l~~~i~~~~~~g-~~~~v~~~~~~---------~~~~~~~~~~~~~v~~m~~e~G  139 (215)
T PRK13813         73 CEAVFEAGAWGIIVHGFTGRD---SLKAVVEAAAESG-GKVFVVVEMSH---------PGALEFIQPHADKLAKLAQEAG  139 (215)
T ss_pred             HHHHHhCCCCEEEEcCcCCHH---HHHHHHHHHHhcC-CeEEEEEeCCC---------CCCCCCHHHHHHHHHHHHHHhC
Confidence            578889999999998875321   1333334445565 34444444320         0111111112334455566678


Q ss_pred             CCEEEEeecCCccccCCCCHHHHHHHhhcCCCc-EEEEeCCCCH-HHHHHHHHhCCCcCEEEEccchhhccCcccHHHHH
Q 021156          227 ADEFLVHGVDVEGKKLGIDDELVALLGKYSPIP-VTYAGGVTTM-ADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVV  304 (316)
Q Consensus       227 a~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iP-VIasGGI~s~-eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~  304 (316)
                      ++...+.         ....+.++++++..+-+ .++.|||+.. .++..+.+.|  ++.+++||++  |..+ ++++..
T Consensus       140 ~~g~~~~---------~~~~~~i~~l~~~~~~~~~ivdgGI~~~g~~~~~~~~aG--ad~iV~Gr~I--~~~~-d~~~~~  205 (215)
T PRK13813        140 AFGVVAP---------ATRPERVRYIRSRLGDELKIISPGIGAQGGKAADAIKAG--ADYVIVGRSI--YNAA-DPREAA  205 (215)
T ss_pred             CCeEEEC---------CCcchhHHHHHHhcCCCcEEEeCCcCCCCCCHHHHHHcC--CCEEEECccc--CCCC-CHHHHH
Confidence            7654321         11235556665544333 3488999875 2588888888  8999999999  7543 345544


Q ss_pred             HHH
Q 021156          305 AWH  307 (316)
Q Consensus       305 ~~~  307 (316)
                      +..
T Consensus       206 ~~l  208 (215)
T PRK13813        206 KAI  208 (215)
T ss_pred             HHH
Confidence            433

>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI

Probab=95.90  E-value=0.034  Score=48.12  Aligned_cols=73  Identities=23%  Similarity=0.089  Sum_probs=50.1

Q ss_pred             CHHHHHHHHHHcCCCcceEEEec-C-------CcccHHHHHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeee
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLG-A-------DPLSKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVF  165 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLd-a-------~~~~~~~i~~~v~~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~  165 (316)
                      ++.+ ++.+.+.|++.+.+--.. +       .......+.+..+..++|+.+.|||+.+++..+.++|++.+++|+..+
T Consensus       104 t~~~-~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~a~GGi~~~~i~~~~~~Ga~~i~~g~~i~  182 (196)
T cd00564         104 SLEE-ALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELVEIPVVAIGGITPENAAEVLAAGADGVAVISAIT  182 (196)
T ss_pred             CHHH-HHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcCCCEEEEehHhh
Confidence            4544 455666787765442111 1       112233444444447799999999998999999999999999999988


Q ss_pred             cC
Q 021156          166 NN  167 (316)
Q Consensus       166 ~~  167 (316)
                      .+
T Consensus       183 ~~  184 (196)
T cd00564         183 GA  184 (196)
T ss_pred             cC
Confidence            65

TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.

>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed

Probab=95.89  E-value=0.055  Score=47.89  Aligned_cols=73  Identities=22%  Similarity=0.115  Sum_probs=49.5

Q ss_pred             CHHHHHHHHHHcCCCcceE--EEecCCcc------cHHHHHHHHHhCC-CcEEEecCCCHHHHHHHHHcCCCEEEeCCee
Q 021156           94 SAAEFANLYKEDGLTGGHA--IMLGADPL------SKAAAIEALHAYP-GGLQVGGGINSDNSLSYIEEGATHVIVTSYV  164 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~l--vDLda~~~------~~~~i~~~v~~~~-~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~  164 (316)
                      ++.++.+ ..+.|++.+.+  +.=...++      ..+.+.+..+..+ +|+.+.|||+.+++..++++||+.+++|+..
T Consensus       113 t~~e~~~-a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI~~~~i~~~~~~Ga~gv~~gs~i  191 (212)
T PRK00043        113 TLEEAAA-ALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGGITPENAPEVLEAGADGVAVVSAI  191 (212)
T ss_pred             CHHHHHH-HhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcCCCEEEEeHHh
Confidence            5666544 33567776543  11111111      1344444444555 9999999999899999999999999999998


Q ss_pred             ecC
Q 021156          165 FNN  167 (316)
Q Consensus       165 ~~~  167 (316)
                      +++
T Consensus       192 ~~~  194 (212)
T PRK00043        192 TGA  194 (212)
T ss_pred             hcC
Confidence            764

>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3

Probab=95.89  E-value=0.017  Score=55.85  Aligned_cols=93  Identities=13%  Similarity=0.037  Sum_probs=65.1

Q ss_pred             CHHHHHHHHHHcC-CCcceEEE-----------ecCC----cccHHHHHHHHH-hCCCcEEEecCCC-HHHHHHHHHcC-
Q 021156           94 SAAEFANLYKEDG-LTGGHAIM-----------LGAD----PLSKAAAIEALH-AYPGGLQVGGGIN-SDNSLSYIEEG-  154 (316)
Q Consensus        94 ~p~e~a~~~~~~G-~~~l~lvD-----------Lda~----~~~~~~i~~~v~-~~~~pl~vGGGIr-~e~~~~~l~~G-  154 (316)
                      +.+++++.++++| ++.+|+--           .-..    +.......+.++ .+++|+++.|||+ .++++++++.| 
T Consensus       229 e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~  308 (343)
T cd04734         229 EALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVDLPVFHAGRIRDPAEAEQALAAGH  308 (343)
T ss_pred             HHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcCCCEEeeCCCCCHHHHHHHHHcCC
Confidence            5678899999998 78777621           0000    011223334444 5789999999998 59999999875 


Q ss_pred             CCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEee
Q 021156          155 ATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDL  191 (316)
Q Consensus       155 ad~VVigt~~~~~~~~~~eli~ei~~~~G~~~Ivvsl  191 (316)
                      ||.|.+|-.++.|    |+++.++.+.- .+.|..++
T Consensus       309 ~D~V~~gR~~lad----P~l~~k~~~g~-~~~i~~C~  340 (343)
T cd04734         309 ADMVGMTRAHIAD----PHLVAKAREGR-EDDIRPCI  340 (343)
T ss_pred             CCeeeecHHhHhC----ccHHHHHHcCC-ccCcCcCc
Confidence            9999999999998    99999997643 13444443

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.

>PLN02411 12-oxophytodienoate reductase

Probab=95.84  E-value=0.065  Score=52.73  Aligned_cols=53  Identities=15%  Similarity=0.040  Sum_probs=43.8

Q ss_pred             HHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHH
Q 021156          247 ELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDV  303 (316)
Q Consensus       247 eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~  303 (316)
                      .+.+.+++.+++||+++|++ +.++..++++.| .+|-|.+||++  ..+|-..+.+
T Consensus       303 ~~a~~ik~~v~~pvi~~G~i-~~~~a~~~l~~g-~aDlV~~gR~~--iadPdl~~k~  355 (391)
T PLN02411        303 QLMRTLRRAYQGTFMCSGGF-TRELGMQAVQQG-DADLVSYGRLF--ISNPDLVLRF  355 (391)
T ss_pred             HHHHHHHHHcCCCEEEECCC-CHHHHHHHHHcC-CCCEEEECHHH--HhCccHHHHH
Confidence            45677888889999999999 569999999988 48999999999  8887544444

>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase

Probab=95.82  E-value=0.12  Score=48.32  Aligned_cols=63  Identities=17%  Similarity=0.236  Sum_probs=48.4

Q ss_pred             HHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          217 ERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       217 e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      +.++++.+.|++.+.+-.         +..+.++++.+..  .+|+.++||| +.+.+.++.+.|  ++++.+|...
T Consensus       189 eea~~A~~~gaDyI~ld~---------~~~e~lk~~v~~~~~~ipi~AsGGI-~~~ni~~~a~~G--vd~Isvgait  253 (265)
T TIGR00078       189 EEAEEAAEAGADIIMLDN---------MKPEEIKEAVQLLKGRVLLEASGGI-TLDNLEEYAETG--VDVISSGALT  253 (265)
T ss_pred             HHHHHHHHcCCCEEEECC---------CCHHHHHHHHHHhcCCCcEEEECCC-CHHHHHHHHHcC--CCEEEeCHHH
Confidence            668888899999876522         2335666665543  3899999999 589999999998  9999995544

Synonym: quinolinate phosphoribosyltransferase (decarboxylating)

>PRK04302 triosephosphate isomerase; Provisional

Probab=95.79  E-value=0.015  Score=52.51  Aligned_cols=43  Identities=28%  Similarity=0.367  Sum_probs=35.8

Q ss_pred             HHHHHHh--CCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecC
Q 021156          125 AIEALHA--YPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNN  167 (316)
Q Consensus       125 i~~~v~~--~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~  167 (316)
                      +.+.+++  .++|+.+||||+ .++++.+++.|+|-|++||+..+.
T Consensus       163 ~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gadGvlVGsa~l~~  208 (223)
T PRK04302        163 AVEAVKKVNPDVKVLCGAGISTGEDVKAALELGADGVLLASGVVKA  208 (223)
T ss_pred             HHHHHHhccCCCEEEEECCCCCHHHHHHHHcCCCCEEEEehHHhCC
Confidence            3444554  268999999998 599999999999999999999874

>TIGR02317 prpB methylisocitrate lyase

Probab=95.75  E-value=0.22  Score=46.97  Aligned_cols=178  Identities=16%  Similarity=0.107  Sum_probs=101.9

Q ss_pred             CHHHHHHHHHHcCCCcceEEEec-----C----CcccHHHH----HHHHHhCCCcEEEec-----CC-CH-HHHHHHHHc
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLG-----A----DPLSKAAA----IEALHAYPGGLQVGG-----GI-NS-DNSLSYIEE  153 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLd-----a----~~~~~~~i----~~~v~~~~~pl~vGG-----GI-r~-e~~~~~l~~  153 (316)
                      |+. -|+..+++|++.+++-=..     +    +.....++    .++.+.+++||++++     +. +. ..++++.++
T Consensus        22 Da~-SAri~e~aGf~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~~tv~~~~~a  100 (285)
T TIGR02317        22 NAM-AALLAERAGFEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRITRVTDLPLLVDADTGFGEAFNVARTVREMEDA  100 (285)
T ss_pred             CHH-HHHHHHHcCCCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHc
Confidence            666 6677777787755443211     0    01123333    333445789999862     32 23 569999999


Q ss_pred             CCCEEEeCCeeec------CCC-C-CH-HHHHHHHHHhcC-ceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHH
Q 021156          154 GATHVIVTSYVFN------NGQ-M-DL-ERLKDLVRVVGK-QRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFL  223 (316)
Q Consensus       154 Gad~VVigt~~~~------~~~-~-~~-eli~ei~~~~G~-~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~  223 (316)
                      |+.-+.|--....      .++ + ++ +++.++....-. ...-+-|-.|. |-   ....++.     +.++.++.+.
T Consensus       101 G~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiART-Da---~~~~g~d-----eAI~Ra~ay~  171 (285)
T TIGR02317       101 GAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIART-DA---RAVEGLD-----AAIERAKAYV  171 (285)
T ss_pred             CCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEc-Cc---ccccCHH-----HHHHHHHHHH
Confidence            9999888332211      111 1 22 344444433210 11001111121 10   0111221     4678899999


Q ss_pred             HcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcE---EEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          224 ASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPV---TYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       224 ~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPV---IasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      +.|++.+.++...        +.+.++++.+.++.|+   ...+|-...-++.+|.++|  +.-|+.|..+
T Consensus       172 ~AGAD~vfi~g~~--------~~e~i~~~~~~i~~Pl~~n~~~~~~~p~~s~~eL~~lG--v~~v~~~~~~  232 (285)
T TIGR02317       172 EAGADMIFPEALT--------SLEEFRQFAKAVKVPLLANMTEFGKTPLFTADELREAG--YKMVIYPVTA  232 (285)
T ss_pred             HcCCCEEEeCCCC--------CHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHHHHHcC--CcEEEEchHH
Confidence            9999998876532        4678889988878888   3445543334678888898  8889999776

Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.

>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain

Probab=95.61  E-value=0.041  Score=53.19  Aligned_cols=71  Identities=21%  Similarity=0.127  Sum_probs=51.8

Q ss_pred             HHHHHHHHcCCCcceEEEecCCc-----ccHHHHHHH---HHhC--CCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeee
Q 021156           97 EFANLYKEDGLTGGHAIMLGADP-----LSKAAAIEA---LHAY--PGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVF  165 (316)
Q Consensus        97 e~a~~~~~~G~~~l~lvDLda~~-----~~~~~i~~~---v~~~--~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~  165 (316)
                      +-|+...+.|++.+.+..-.+..     .....+.++   .+++  .+||++.||||. .|+-+++..||+.|-+|+.++
T Consensus       225 ~dA~~a~~~G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv~kalaLGA~aV~iG~~~l  304 (344)
T cd02922         225 EDAVLAAEYGVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKALCLGAKAVGLGRPFL  304 (344)
T ss_pred             HHHHHHHHcCCCEEEEECCCcccCCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence            57778888999988887643321     111122222   2223  489999999995 999999999999999999988


Q ss_pred             cC
Q 021156          166 NN  167 (316)
Q Consensus       166 ~~  167 (316)
                      ..
T Consensus       305 ~~  306 (344)
T cd02922         305 YA  306 (344)
T ss_pred             HH
Confidence            75

FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.

>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional

Probab=95.60  E-value=0.047  Score=53.68  Aligned_cols=73  Identities=11%  Similarity=0.065  Sum_probs=48.6

Q ss_pred             cCHHHHHHHHHHcCCCcceE---EEecCCcccHHHHHHHHHh--CCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecC
Q 021156           93 KSAAEFANLYKEDGLTGGHA---IMLGADPLSKAAAIEALHA--YPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNN  167 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~l---vDLda~~~~~~~i~~~v~~--~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~  167 (316)
                      .+|.+.++.+ ..+.+.+-+   +|-++..+....+ +.+++  .+.+++++|||+.+++..+.++|||.+|+|++.++.
T Consensus       287 ~tp~e~i~~l-~~~vD~Vllht~vdp~~~~~~~~kI-~~ikk~~~~~~I~VdGGI~~eti~~l~~aGADivVVGsaIf~a  364 (391)
T PRK13307        287 EDPVKLLESL-KVKPDVVELHRGIDEEGTEHAWGNI-KEIKKAGGKILVAVAGGVRVENVEEALKAGADILVVGRAITKS  364 (391)
T ss_pred             CCHHHHHHHh-hCCCCEEEEccccCCCcccchHHHH-HHHHHhCCCCcEEEECCcCHHHHHHHHHcCCCEEEEeHHHhCC
Confidence            4688888777 444443322   2222112223333 33333  467899999999999999999999999999998754

>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed

Probab=95.50  E-value=0.26  Score=47.67  Aligned_cols=150  Identities=12%  Similarity=0.098  Sum_probs=92.4

Q ss_pred             CcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCC------CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEE-e--
Q 021156          134 GGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQ------MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIV-T--  204 (316)
Q Consensus       134 ~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~------~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~-~--  204 (316)
                      +-+-.+=|-..+.+.+.+++|++.|.++...+.|+.      =|....+++++..-+  .-+++-.-.  |  .|. .  
T Consensus        78 ValHLDHg~~~e~i~~ai~~GftSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~--~Gv~VEaEL--G--~vgg~e~  151 (347)
T PRK09196         78 VVMHQDHGNSPATCQRAIQLGFTSVMMDGSLKADGKTPASYEYNVDVTRKVVEMAHA--CGVSVEGEL--G--CLGSLET  151 (347)
T ss_pred             EEEECCCCCCHHHHHHHHHcCCCEEEecCCCCcccCCCCCHHHHHHHHHHHHHHHHH--cCCeEEEEE--e--eccCccc
Confidence            334555565568999999999999999766542110      025555665544211  113333210  1  111 0  


Q ss_pred             ------CCc--c-----eecccCHHHHHHHHHHcCCCEEE-----EeecCCcc-ccC--CCCHHHHHHHhhcC-CCcEEE
Q 021156          205 ------DRW--Q-----KFSDVYLDERVLDFLASYADEFL-----VHGVDVEG-KKL--GIDDELVALLGKYS-PIPVTY  262 (316)
Q Consensus       205 ------~gw--~-----~~~~~~~~e~a~~~~~~Ga~~il-----vtdi~~dG-~~~--G~d~eli~~l~~~~-~iPVIa  262 (316)
                            .+.  .     +..--++.+..+...+.|++.+-     .|..-..+ .-.  ..|++.++++.+.+ ++|+..
T Consensus       152 ~~~g~~~~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~~vPLVL  231 (347)
T PRK09196        152 GMGGEEDGHGAEGKLSHDQLLTDPEEAADFVKKTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARLPNTHLVM  231 (347)
T ss_pred             cccccccCcccccccchhhcCCCHHHHHHHHHHhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcCCCCCEEE
Confidence                  010  0     00012577777777788999763     34443321 111  16999999999988 799999


Q ss_pred             EeCCCC----------------------HHHHHHHHHhCCCcCEEEEccch
Q 021156          263 AGGVTT----------------------MADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       263 sGGI~s----------------------~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      -||=+.                      .++++++.+.|  +..|=|++.+
T Consensus       232 HGgSG~~~~~~~~~~~~g~~~~~~~G~~~e~i~~ai~~G--I~KINi~Tdl  280 (347)
T PRK09196        232 HGSSSVPQELLDIINEYGGDMPETYGVPVEEIQEGIKHG--VRKVNIDTDL  280 (347)
T ss_pred             eCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCC--CceEEeChHH
Confidence            998755                      37789999988  9999999877

>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2

Probab=95.47  E-value=0.059  Score=51.82  Aligned_cols=69  Identities=19%  Similarity=0.204  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHcCCCcceEEEecCCcc-----------------------c---HHHHHHHHH-hCCCcEEEecCCCH-HH
Q 021156           95 AAEFANLYKEDGLTGGHAIMLGADPL-----------------------S---KAAAIEALH-AYPGGLQVGGGINS-DN  146 (316)
Q Consensus        95 p~e~a~~~~~~G~~~l~lvDLda~~~-----------------------~---~~~i~~~v~-~~~~pl~vGGGIr~-e~  146 (316)
                      ..+.|+.+.++|++.+.+   .+...                       .   ...+.++.+ ..++|++..||||+ +|
T Consensus       192 ~~~~a~~L~~aGvd~I~V---sg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipVIasGGI~~~~d  268 (333)
T TIGR02151       192 SKEVAKLLADAGVSAIDV---AGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSDAPDAPIIASGGLRTGLD  268 (333)
T ss_pred             CHHHHHHHHHcCCCEEEE---CCCCCCcccchhhhcccccccchhhhcccHhHHHHHHHHHhcCCCCeEEEECCCCCHHH
Confidence            457899999999875554   43210                       0   012223333 35799999999995 99


Q ss_pred             HHHHHHcCCCEEEeCCeeec
Q 021156          147 SLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus       147 ~~~~l~~Gad~VVigt~~~~  166 (316)
                      +.+++..|||.|-+|+.++.
T Consensus       269 i~kaLalGAd~V~igr~~L~  288 (333)
T TIGR02151       269 VAKAIALGADAVGMARPFLK  288 (333)
T ss_pred             HHHHHHhCCCeehhhHHHHH
Confidence            99999999999999998874

Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.

>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain

Probab=95.45  E-value=0.019  Score=55.64  Aligned_cols=95  Identities=15%  Similarity=0.099  Sum_probs=68.1

Q ss_pred             CHHHHHHHHHHcCCCcceEEE--ecC-Cc--------ccHHHHHHHHH-hCCCcEEEecCCC-HHHHHHHHHcC-CCEEE
Q 021156           94 SAAEFANLYKEDGLTGGHAIM--LGA-DP--------LSKAAAIEALH-AYPGGLQVGGGIN-SDNSLSYIEEG-ATHVI  159 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvD--Lda-~~--------~~~~~i~~~v~-~~~~pl~vGGGIr-~e~~~~~l~~G-ad~VV  159 (316)
                      +.+++++.++++|++.+|+.-  .+. ..        .......+.++ .+++||.++|+++ .++++++++.| +|.|.
T Consensus       225 e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~~~~~a~~~i~~g~~D~V~  304 (353)
T cd02930         225 EVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDIPVIASNRINTPEVAERLLADGDADMVS  304 (353)
T ss_pred             HHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCCCEEEcCCCCCHHHHHHHHHCCCCChhH
Confidence            456788999999988887721  111 00        01223333444 5889999999998 59999999976 99999


Q ss_pred             eCCeeecCCCCCHHHHHHHHHHhcCceEEEeeee
Q 021156          160 VTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSC  193 (316)
Q Consensus       160 igt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~  193 (316)
                      +|-.++.|    |++++++.+.- .+.|..++.+
T Consensus       305 ~gR~~l~d----P~~~~k~~~g~-~~~i~~Ci~c  333 (353)
T cd02930         305 MARPFLAD----PDFVAKAAAGR-ADEINTCIAC  333 (353)
T ss_pred             hhHHHHHC----ccHHHHHHhCC-cccCcCchhh
Confidence            99999998    99999998743 2345555554

DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi

>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase

Probab=95.43  E-value=0.47  Score=44.98  Aligned_cols=174  Identities=15%  Similarity=0.129  Sum_probs=103.0

Q ss_pred             CHHHHHHHHHHcCCCcceEEEec--CC--------cccHHHH----HHHHHhCCCcEEEec--CC----CH-HHHHHHHH
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLG--AD--------PLSKAAA----IEALHAYPGGLQVGG--GI----NS-DNSLSYIE  152 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLd--a~--------~~~~~~i----~~~v~~~~~pl~vGG--GI----r~-e~~~~~l~  152 (316)
                      |+. -|+..+++|++.+++-=..  +.        .....++    .++++.+++||++++  |.    +. ..++++.+
T Consensus        25 Da~-SArl~e~aGf~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~~~lPv~aD~dtGyG~~~~v~r~V~~~~~  103 (294)
T TIGR02319        25 DAL-SAKVIQQAGFPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLAVDVPVIMDADAGYGNAMSVWRATREFER  103 (294)
T ss_pred             CHH-HHHHHHHcCCCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCcHHHHHHHHHHHH
Confidence            676 6777888888766542111  10        1123333    333445789999863  32    22 45899999


Q ss_pred             cCCCEEEeCCeeec------CCC-C-C-HHHHHHHHHHhc-Cce----EEEeeeeeecCCeeEEEeCCcceecccCHHHH
Q 021156          153 EGATHVIVTSYVFN------NGQ-M-D-LERLKDLVRVVG-KQR----LVLDLSCRKKDGKYAIVTDRWQKFSDVYLDER  218 (316)
Q Consensus       153 ~Gad~VVigt~~~~------~~~-~-~-~eli~ei~~~~G-~~~----IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~  218 (316)
                      +|+.-+.|--....      .++ + + .+++++|....- .+.    |+.-.|.+        ...++.     +.++.
T Consensus       104 aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~--------~~~g~d-----eaI~R  170 (294)
T TIGR02319       104 VGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDAR--------ESFGLD-----EAIRR  170 (294)
T ss_pred             cCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEeccc--------ccCCHH-----HHHHH
Confidence            99999888332221      111 1 2 234444443321 011    11222221        012221     46788


Q ss_pred             HHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcE---EEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          219 VLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPV---TYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       219 a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPV---IasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      ++.+.+.|++.+.++..        .+.+.++++.+.++.|+   +..||-...-.+.+|.++|  +.-|+.+..+
T Consensus       171 a~aY~eAGAD~ifi~~~--------~~~~ei~~~~~~~~~P~~~nv~~~~~~p~~s~~eL~~lG--~~~v~~~~~~  236 (294)
T TIGR02319       171 SREYVAAGADCIFLEAM--------LDVEEMKRVRDEIDAPLLANMVEGGKTPWLTTKELESIG--YNLAIYPLSG  236 (294)
T ss_pred             HHHHHHhCCCEEEecCC--------CCHHHHHHHHHhcCCCeeEEEEecCCCCCCCHHHHHHcC--CcEEEEcHHH
Confidence            99999999999987643        25678889988877787   4555544445688888888  8889999655

This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.

>PRK14567 triosephosphate isomerase; Provisional

Probab=95.41  E-value=0.19  Score=46.59  Aligned_cols=147  Identities=11%  Similarity=0.096  Sum_probs=85.0

Q ss_pred             HHHHHHHcCCCEEEeCCeeecC--CCCCHHHHHHHHHHhcC-ceEEEeeeeeecCCeeEEEeCCcceecccCHHHH-HHH
Q 021156          146 NSLSYIEEGATHVIVTSYVFNN--GQMDLERLKDLVRVVGK-QRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDER-VLD  221 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~~~~~--~~~~~eli~ei~~~~G~-~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~-a~~  221 (316)
                      .+..+.+.|++.|+||=.-++.  ++.|...-+++....-. =..++++.-... .    +      ..+ ...+. .++
T Consensus        77 S~~mLkd~G~~yviiGHSERR~~f~Etd~~v~~Kv~~al~~gl~pI~CiGEt~e-e----r------e~g-~~~~vv~~Q  144 (253)
T PRK14567         77 SARMLEDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTITPVVCIGESLD-D----R------QSG-KLKQVLATQ  144 (253)
T ss_pred             CHHHHHHcCCCEEEECcccccCccCCCHHHHHHHHHHHHHCCCEEEEEcCCcHH-H----H------HcC-CHHHHHHHH
Confidence            3778889999999999765543  33333333344333311 235566642100 0    0      001 11111 112


Q ss_pred             HHHc--C-----CCEE--EEeecCCccccCCCCHHHHHH----Hhh---------cCCCcEEEEeCCCCHHHHHHHHHhC
Q 021156          222 FLAS--Y-----ADEF--LVHGVDVEGKKLGIDDELVAL----LGK---------YSPIPVTYAGGVTTMADLEKIKVAG  279 (316)
Q Consensus       222 ~~~~--G-----a~~i--lvtdi~~dG~~~G~d~eli~~----l~~---------~~~iPVIasGGI~s~eDi~~l~~~G  279 (316)
                      +...  +     ...+  -|-.+..-||..-+..+.+++    +++         ..+++++++|+| +++++.++++.+
T Consensus       145 l~~~l~~i~~~~~~~ivIAYEPvWAIGTG~~as~e~i~~~~~~IR~~l~~~~~~~a~~v~IlYGGSV-~~~N~~~l~~~~  223 (253)
T PRK14567        145 LSLILENLSVEQLAKVVIAYEPVWAIGTGVVASLEQIQETHQFIRSLLAKVDERLAKNIKIVYGGSL-KAENAKDILSLP  223 (253)
T ss_pred             HHHHHccCCHHHhCCEEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHhhcccccccceEEEcCcC-CHHHHHHHHcCC
Confidence            2110  1     1223  256777778877666554433    332         125899999999 999999999998


Q ss_pred             CCcCEEEEccchhhccCcccHHHHHHHHHh
Q 021156          280 IGRVDVTVGSALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       280 ~g~~gVivG~Al~~~~g~~~~~~~~~~~~~  309 (316)
                       ++||+.||+|-  + .+-.|.++++..++
T Consensus       224 -diDG~LVGgas--L-~~~~F~~Ii~~~~~  249 (253)
T PRK14567        224 -DVDGGLIGGAS--L-KAAEFNEIINQANK  249 (253)
T ss_pred             -CCCEEEeehhh--h-cHHHHHHHHHHHHh
Confidence             69999999999  6 33356666655443

>TIGR00742 yjbN tRNA dihydrouridine synthase A

Probab=95.41  E-value=0.076  Score=50.80  Aligned_cols=81  Identities=15%  Similarity=0.231  Sum_probs=59.8

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCc--------c--------cHHHHHHHHHhC-CCcEEEecCCC-HHHHHHHHHcCC
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADP--------L--------SKAAAIEALHAY-PGGLQVGGGIN-SDNSLSYIEEGA  155 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~--------~--------~~~~i~~~v~~~-~~pl~vGGGIr-~e~~~~~l~~Ga  155 (316)
                      +..++++.+.++|++.   +.+.+-.        .        +...+.+..+.+ .+|++.-|||+ .+|+++.+. ||
T Consensus       142 ~~~~~~~~l~~~G~~~---itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~-g~  217 (318)
T TIGR00742       142 FLCDFVEIVSGKGCQN---FIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS-HV  217 (318)
T ss_pred             HHHHHHHHHHHcCCCE---EEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh-CC
Confidence            3457788888888764   4444321        0        233343443455 79999999998 599999986 99


Q ss_pred             CEEEeCCeeecCCCCCHHHHHHHHHHh
Q 021156          156 THVIVTSYVFNNGQMDLERLKDLVRVV  182 (316)
Q Consensus       156 d~VVigt~~~~~~~~~~eli~ei~~~~  182 (316)
                      |.|.||..++.|    |.++.++.+.+
T Consensus       218 dgVMigRgal~n----P~if~~~~~~l  240 (318)
T TIGR00742       218 DGVMVGREAYEN----PYLLANVDREI  240 (318)
T ss_pred             CEEEECHHHHhC----CHHHHHHHHHh
Confidence            999999999998    99999997654

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>PRK10605 N-ethylmaleimide reductase; Provisional

Probab=95.39  E-value=0.061  Score=52.38  Aligned_cols=83  Identities=16%  Similarity=0.127  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHcCCCcceEEEec--CCcccHHHHHHHHH-hCCCcEEEecCCCHHHHHHHHHcC-CCEEEeCCeeecCCCC
Q 021156           95 AAEFANLYKEDGLTGGHAIMLG--ADPLSKAAAIEALH-AYPGGLQVGGGINSDNSLSYIEEG-ATHVIVTSYVFNNGQM  170 (316)
Q Consensus        95 p~e~a~~~~~~G~~~l~lvDLd--a~~~~~~~i~~~v~-~~~~pl~vGGGIr~e~~~~~l~~G-ad~VVigt~~~~~~~~  170 (316)
                      .+++++.+.+.|++.+|+..-+  ....-.....+.++ .+++|+.++|+++.++++++++.| ||.|-+|-.++.|   
T Consensus       251 ~~~~~~~L~~~giD~i~vs~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~~~~~~ae~~i~~G~~D~V~~gR~~iad---  327 (362)
T PRK10605        251 ALYLIEQLGKRGIAYLHMSEPDWAGGEPYSDAFREKVRARFHGVIIGAGAYTAEKAETLIGKGLIDAVAFGRDYIAN---  327 (362)
T ss_pred             HHHHHHHHHHcCCCEEEeccccccCCccccHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCCEEEECHHhhhC---
Confidence            4677888888888877765321  11111223334454 578999999998679999999988 9999999999998   


Q ss_pred             CHHHHHHHHHH
Q 021156          171 DLERLKDLVRV  181 (316)
Q Consensus       171 ~~eli~ei~~~  181 (316)
                       |+++.++.+.
T Consensus       328 -Pd~~~k~~~g  337 (362)
T PRK10605        328 -PDLVARLQRK  337 (362)
T ss_pred             -ccHHHHHhcC
Confidence             9999999763

>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain

Probab=95.37  E-value=0.031  Score=54.37  Aligned_cols=72  Identities=19%  Similarity=0.125  Sum_probs=52.8

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCC-----cccHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeec
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGAD-----PLSKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~-----~~~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      ++. -|+...+.|++++.+-.-.+.     ......+.++.+.+++||++.|||| -.|+-+++..||+.|.+|..++.
T Consensus       246 ~~e-da~~a~~~G~d~I~VSnhGGrqld~~~~~~~~L~ei~~~~~~~vi~dGGIr~g~Dv~KALaLGA~aV~iGr~~l~  323 (361)
T cd04736         246 TAE-DAKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVAATYKPVLIDSGIRRGSDIVKALALGANAVLLGRATLY  323 (361)
T ss_pred             CHH-HHHHHHHCCcCEEEECCCCcCCCcCCccHHHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence            344 677777889887665443322     1223444455555789999999999 59999999999999999998874

MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]

Probab=95.35  E-value=1.1  Score=40.85  Aligned_cols=161  Identities=17%  Similarity=0.190  Sum_probs=106.8

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCC---cccHHHHHHHHHhCCCcEEE-----ecCC-------C-H-HHHHHHHHcCCC
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGAD---PLSKAAAIEALHAYPGGLQV-----GGGI-------N-S-DNSLSYIEEGAT  156 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~---~~~~~~i~~~v~~~~~pl~v-----GGGI-------r-~-e~~~~~l~~Gad  156 (316)
                      ||. -+....+.|++++-+-+-=+.   .+.--.++++++..++|+.+     ||-+       . . +|++.+-++|++
T Consensus        10 n~~-~l~~A~~~GAdRiELC~~La~GG~TPSyG~~k~a~~~~~ipv~~MIRPRgGdFvY~~~E~~iM~~DI~~~~~lG~~   88 (241)
T COG3142          10 NVE-GLLAAQAAGADRIELCDALAEGGLTPSYGVIKEAVELSKIPVYVMIRPRGGDFVYSDDELEIMLEDIRLARELGVQ   88 (241)
T ss_pred             CHh-hHHHHHHcCCceeehhhccccCCCCCCHHHHHHHHhhcCCceEEEEecCCCCcccChHHHHHHHHHHHHHHHcCCC
Confidence            554 455556789999988874322   45666677777767777765     5554       2 2 578888999999


Q ss_pred             EEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecC
Q 021156          157 HVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVD  236 (316)
Q Consensus       157 ~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~  236 (316)
                      -||+|...- ||++|.+.++++.+.-++      +++        .+...+...  .++.+..+++.++|+.+|+-+.  
T Consensus        89 GVV~G~lt~-dg~iD~~~le~Li~aA~g------L~v--------TFHrAFD~~--~d~~~ale~li~~Gv~RILTsG--  149 (241)
T COG3142          89 GVVLGALTA-DGNIDMPRLEKLIEAAGG------LGV--------TFHRAFDEC--PDPLEALEQLIELGVERILTSG--  149 (241)
T ss_pred             cEEEeeecC-CCccCHHHHHHHHHHccC------Cce--------eeehhhhhc--CCHHHHHHHHHHCCCcEEecCC--
Confidence            999998764 478999999999987642      322        111233322  2588899999999999998333  


Q ss_pred             CccccCCC-CHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHH
Q 021156          237 VEGKKLGI-DDELVALLGKYS--PIPVTYAGGVTTMADLEKIKV  277 (316)
Q Consensus       237 ~dG~~~G~-d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~  277 (316)
                        |..+-. .++.++++.+..  .+.+.++|||+. +.+..+..
T Consensus       150 --g~~sa~eg~~~l~~li~~a~gri~Im~GaGV~~-~N~~~l~~  190 (241)
T COG3142         150 --GKASALEGLDLLKRLIEQAKGRIIIMAGAGVRA-ENIAELVL  190 (241)
T ss_pred             --CcCchhhhHHHHHHHHHHhcCCEEEEeCCCCCH-HHHHHHHH
Confidence              222222 566777776543  455666666654 66777744

>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain

Probab=95.31  E-value=0.055  Score=52.20  Aligned_cols=82  Identities=18%  Similarity=0.232  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHcCCCcceEEEecC-C--cccHHHHHHHHH-hCCCcEEEecCCCHHHHHHHHHcC-CCEEEeCCeeecCCC
Q 021156           95 AAEFANLYKEDGLTGGHAIMLGA-D--PLSKAAAIEALH-AYPGGLQVGGGINSDNSLSYIEEG-ATHVIVTSYVFNNGQ  169 (316)
Q Consensus        95 p~e~a~~~~~~G~~~l~lvDLda-~--~~~~~~i~~~v~-~~~~pl~vGGGIr~e~~~~~l~~G-ad~VVigt~~~~~~~  169 (316)
                      -+++++.+.+.|++.+++.-=.- .  ........+.++ .+++||++-|||+.++++++++.| ||.|.+|-.++.|  
T Consensus       243 ~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i~~~~a~~~l~~g~~D~V~~gR~~lad--  320 (338)
T cd02933         243 FSYLAKELNKRGLAYLHLVEPRVAGNPEDQPPDFLDFLRKAFKGPLIAAGGYDAESAEAALADGKADLVAFGRPFIAN--  320 (338)
T ss_pred             HHHHHHHHHHcCCcEEEEecCCCCCcccccchHHHHHHHHHcCCCEEEECCCCHHHHHHHHHcCCCCEEEeCHhhhhC--
Confidence            45788888888887666522110 0  112223333344 578999999999988899999976 9999999999998  


Q ss_pred             CCHHHHHHHHH
Q 021156          170 MDLERLKDLVR  180 (316)
Q Consensus       170 ~~~eli~ei~~  180 (316)
                        |+++.++.+
T Consensus       321 --P~~~~k~~~  329 (338)
T cd02933         321 --PDLVERLKN  329 (338)
T ss_pred             --cCHHHHHhc
Confidence              999998865

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.

>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase

Probab=95.28  E-value=0.12  Score=45.80  Aligned_cols=75  Identities=24%  Similarity=0.156  Sum_probs=49.5

Q ss_pred             cCHHHHHHHHHHcCCCcceEEE-ecCC---cccHHHHHHHHHhC-CCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecC
Q 021156           93 KSAAEFANLYKEDGLTGGHAIM-LGAD---PLSKAAAIEALHAY-PGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNN  167 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvD-Lda~---~~~~~~i~~~v~~~-~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~  167 (316)
                      ..|.+.++.+.+.|++.+.+-- .++.   ......+.+..+.. ..++.+-|||+.+.+..++++||+.+++|++.++.
T Consensus       113 ~t~~~~~~~~~~~g~d~v~~~pg~~~~~~~~~~~~~i~~l~~~~~~~~i~v~GGI~~~n~~~~~~~Ga~~v~vGsai~~~  192 (206)
T TIGR03128       113 KDKVKRAKELKELGADYIGVHTGLDEQAKGQNPFEDLQTILKLVKEARVAVAGGINLDTIPDVIKLGPDIVIVGGAITKA  192 (206)
T ss_pred             CChHHHHHHHHHcCCCEEEEcCCcCcccCCCCCHHHHHHHHHhcCCCcEEEECCcCHHHHHHHHHcCCCEEEEeehhcCC
Confidence            3466677777777888554310 0000   11223344433333 35788899999999999999999999999998874

at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.

>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2

Probab=95.22  E-value=0.062  Score=51.68  Aligned_cols=83  Identities=13%  Similarity=0.047  Sum_probs=59.1

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCcc-----------c----HHHHHHHHH-hCCCcEEEecCCC-HHHHHHHHHcC-C
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADPL-----------S----KAAAIEALH-AYPGGLQVGGGIN-SDNSLSYIEEG-A  155 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~~-----------~----~~~i~~~v~-~~~~pl~vGGGIr-~e~~~~~l~~G-a  155 (316)
                      +-+++++.+.+.|++.+++--=.-...           .    .....+.++ .+++||+++|+|+ .++++++++.| |
T Consensus       237 ea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~t~~~a~~~l~~g~a  316 (338)
T cd04733         237 DALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTPLMVTGGFRTRAAMEQALASGAV  316 (338)
T ss_pred             HHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCC
Confidence            345788888888887766421000000           0    123333344 5899999999998 59999999987 9


Q ss_pred             CEEEeCCeeecCCCCCHHHHHHHHH
Q 021156          156 THVIVTSYVFNNGQMDLERLKDLVR  180 (316)
Q Consensus       156 d~VVigt~~~~~~~~~~eli~ei~~  180 (316)
                      |.|.+|-.++.|    |+++.++.+
T Consensus       317 D~V~lgR~~iad----P~~~~k~~~  337 (338)
T cd04733         317 DGIGLARPLALE----PDLPNKLLA  337 (338)
T ss_pred             CeeeeChHhhhC----ccHHHHHhc
Confidence            999999999998    999988753

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4

Probab=95.22  E-value=0.017  Score=55.91  Aligned_cols=95  Identities=16%  Similarity=0.205  Sum_probs=67.9

Q ss_pred             CHHHHHHHHHHcCCCcceEEEec--CC----cccHHHHHHHHH-hC--CCcEEEecCCC-HHHHHHHHHcCCCEEEeCCe
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLG--AD----PLSKAAAIEALH-AY--PGGLQVGGGIN-SDNSLSYIEEGATHVIVTSY  163 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLd--a~----~~~~~~i~~~v~-~~--~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~  163 (316)
                      +.+++++.+.+.|++.+|+---.  ..    ........+.++ .+  ++|+++-|||+ .++++++++.|||.|.+|..
T Consensus       236 e~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~gaD~V~~gR~  315 (353)
T cd04735         236 DTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGSINTPDDALEALETGADLVAIGRG  315 (353)
T ss_pred             HHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCChHHHhHH
Confidence            45678899998998877764211  10    011222333343 33  78999999998 59999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHHhcCceEEEeeee
Q 021156          164 VFNNGQMDLERLKDLVRVVGKQRLVLDLSC  193 (316)
Q Consensus       164 ~~~~~~~~~eli~ei~~~~G~~~IvvslD~  193 (316)
                      ++.|    |+++.++.+.- .+.|..+++.
T Consensus       316 liad----Pdl~~k~~~G~-~~~ir~ci~~  340 (353)
T cd04735         316 LLVD----PDWVEKIKEGR-EDEINLEIDP  340 (353)
T ss_pred             HHhC----ccHHHHHHcCC-hhhhhhcCCH
Confidence            9997    99999997643 2456666664

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]

Probab=95.21  E-value=0.072  Score=50.73  Aligned_cols=88  Identities=24%  Similarity=0.315  Sum_probs=65.9

Q ss_pred             ccCHHHHHHHHHHcCCCcceEEEe-------c--C------C-------cccHH---HHHHHH-HhCC--CcEEEecCCC
Q 021156           92 DKSAAEFANLYKEDGLTGGHAIML-------G--A------D-------PLSKA---AAIEAL-HAYP--GGLQVGGGIN  143 (316)
Q Consensus        92 ~~~p~e~a~~~~~~G~~~l~lvDL-------d--a------~-------~~~~~---~i~~~v-~~~~--~pl~vGGGIr  143 (316)
                      ..|-.++|+...++|++++.++.-       |  .      .       +...+   .++..+ +..+  +||+-=|||.
T Consensus       172 ~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~ipIIGvGGI~  251 (310)
T COG0167         172 ITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIGVGGIE  251 (310)
T ss_pred             HHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCCCcEEEecCcC
Confidence            357889999999999999988871       1  1      0       01122   233333 3444  9999999998


Q ss_pred             H-HHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHh
Q 021156          144 S-DNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVV  182 (316)
Q Consensus       144 ~-e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~  182 (316)
                      + +|+.+.+.+||+.|-|+|+++.+|   |.+++++.+..
T Consensus       252 s~~DA~E~i~aGA~~vQv~Tal~~~G---p~i~~~I~~~l  288 (310)
T COG0167         252 TGEDALEFILAGASAVQVGTALIYKG---PGIVKEIIKGL  288 (310)
T ss_pred             cHHHHHHHHHcCCchheeeeeeeeeC---chHHHHHHHHH
Confidence            5 999999999999999999999884   77777776654

>PRK13523 NADPH dehydrogenase NamA; Provisional

Probab=95.21  E-value=0.039  Score=53.22  Aligned_cols=84  Identities=12%  Similarity=0.094  Sum_probs=64.1

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCCc----------ccHHHHHHHHH-hCCCcEEEecCCC-HHHHHHHHHcC-CCEEE
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGADP----------LSKAAAIEALH-AYPGGLQVGGGIN-SDNSLSYIEEG-ATHVI  159 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~~----------~~~~~i~~~v~-~~~~pl~vGGGIr-~e~~~~~l~~G-ad~VV  159 (316)
                      .+.+++++.+++.|++.+++   .+..          .......+.++ .+++|+++.|+|+ .++++++++.| ||.|.
T Consensus       227 ~e~~~i~~~l~~~gvD~i~v---s~g~~~~~~~~~~~~~~~~~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~  303 (337)
T PRK13523        227 QDYVQYAKWMKEQGVDLIDV---SSGAVVPARIDVYPGYQVPFAEHIREHANIATGAVGLITSGAQAEEILQNNRADLIF  303 (337)
T ss_pred             HHHHHHHHHHHHcCCCEEEe---CCCCCCCCCCCCCccccHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCChHH
Confidence            35668889998888876665   3210          11122334444 5789999999998 58999999987 99999


Q ss_pred             eCCeeecCCCCCHHHHHHHHHHhc
Q 021156          160 VTSYVFNNGQMDLERLKDLVRVVG  183 (316)
Q Consensus       160 igt~~~~~~~~~~eli~ei~~~~G  183 (316)
                      +|-.++.|    |+++.++.+..+
T Consensus       304 ~gR~~iad----P~~~~k~~~~~~  323 (337)
T PRK13523        304 IGRELLRN----PYFPRIAAKELG  323 (337)
T ss_pred             hhHHHHhC----ccHHHHHHHHcC
Confidence            99999998    999999988875

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=95.21  E-value=0.058  Score=54.82  Aligned_cols=71  Identities=15%  Similarity=0.083  Sum_probs=49.7

Q ss_pred             HHHHHHHHcCCCcceEE---------EecCC--cc---cHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeC
Q 021156           97 EFANLYKEDGLTGGHAI---------MLGAD--PL---SKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVT  161 (316)
Q Consensus        97 e~a~~~~~~G~~~l~lv---------DLda~--~~---~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVig  161 (316)
                      +-|+...++|++.+.+=         -..+.  .+   ....+-+++++.++|++..|||+ ..|+.+++.+||+.|.+|
T Consensus       301 e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIadGGI~~~~di~kAla~GA~~V~vG  380 (505)
T PLN02274        301 YQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQHGVPVIADGGISNSGHIVKALTLGASTVMMG  380 (505)
T ss_pred             HHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence            46777778898876551         00000  01   11223344456789999999998 699999999999999999


Q ss_pred             CeeecC
Q 021156          162 SYVFNN  167 (316)
Q Consensus       162 t~~~~~  167 (316)
                      |.+...
T Consensus       381 s~~~~t  386 (505)
T PLN02274        381 SFLAGT  386 (505)
T ss_pred             hhhccc
Confidence            998763

>PRK09722 allulose-6-phosphate 3-epimerase; Provisional

Probab=95.20  E-value=0.063  Score=49.00  Aligned_cols=34  Identities=29%  Similarity=0.365  Sum_probs=30.3

Q ss_pred             CCcEEEecCCCHHHHHHHHHcCCCEEEeCCe-eec
Q 021156          133 PGGLQVGGGINSDNSLSYIEEGATHVIVTSY-VFN  166 (316)
Q Consensus       133 ~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~-~~~  166 (316)
                      +..++|+|||+.+.+..+.++|||.+|+||. .+.
T Consensus       169 ~~~IeVDGGI~~~~i~~~~~aGad~~V~Gss~iF~  203 (229)
T PRK09722        169 EYLIEVDGSCNQKTYEKLMEAGADVFIVGTSGLFN  203 (229)
T ss_pred             CeEEEEECCCCHHHHHHHHHcCCCEEEEChHHHcC
Confidence            4669999999999999999999999999965 665

>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene []

Probab=95.20  E-value=0.036  Score=49.00  Aligned_cols=49  Identities=18%  Similarity=0.209  Sum_probs=34.6

Q ss_pred             HHHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHH
Q 021156          125 AIEALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDL  178 (316)
Q Consensus       125 i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei  178 (316)
                      +++.+.+.++|++.-|+|+ .+++.+++++||+-|||||+.-+     |+.+.+.
T Consensus       136 lv~~l~~~~~pvIaEGri~tpe~a~~al~~GA~aVVVGsAITr-----P~~It~~  185 (192)
T PF04131_consen  136 LVRELVQADVPVIAEGRIHTPEQAAKALELGAHAVVVGSAITR-----PQEITKR  185 (192)
T ss_dssp             HHHHHHHTTSEEEEESS--SHHHHHHHHHTT-SEEEE-HHHH------HHHHHHH
T ss_pred             HHHHHHhCCCcEeecCCCCCHHHHHHHHhcCCeEEEECcccCC-----HHHHHHH
Confidence            3444444589999999998 59999999999999999998654     7665443

; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.

>PRK06843 inosine 5-monophosphate dehydrogenase; Validated

Probab=95.18  E-value=0.076  Score=52.41  Aligned_cols=71  Identities=18%  Similarity=0.076  Sum_probs=50.0

Q ss_pred             HHHHHHHHcCCCcceEEEecCC----------c-ccHHHH---HHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeC
Q 021156           97 EFANLYKEDGLTGGHAIMLGAD----------P-LSKAAA---IEALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVT  161 (316)
Q Consensus        97 e~a~~~~~~G~~~l~lvDLda~----------~-~~~~~i---~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVig  161 (316)
                      +.|+.+.++|++.+.+=+=.+.          . +....+   .+.++..++|++..|||+ .+|+.+++.+||+.|++|
T Consensus       206 e~a~~l~~aGaD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KALalGA~aVmvG  285 (404)
T PRK06843        206 EAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIAAGADSVMIG  285 (404)
T ss_pred             HHHHHHHHcCCCEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence            5788888899997763111110          0 122223   222334689999999998 699999999999999999


Q ss_pred             CeeecC
Q 021156          162 SYVFNN  167 (316)
Q Consensus       162 t~~~~~  167 (316)
                      +.+-..
T Consensus       286 s~~agt  291 (404)
T PRK06843        286 NLFAGT  291 (404)
T ss_pred             ceeeee
Confidence            998664

>PRK15452 putative protease; Provisional

Probab=95.18  E-value=0.43  Score=47.75  Aligned_cols=133  Identities=12%  Similarity=0.158  Sum_probs=90.0

Q ss_pred             HHHHHHHHHcCCCEEEeCCeeecC----CCCCHHHHHHHHH---HhcCceEEEeeeeeecCCeeEEEeCCcceecccCHH
Q 021156          144 SDNSLSYIEEGATHVIVTSYVFNN----GQMDLERLKDLVR---VVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLD  216 (316)
Q Consensus       144 ~e~~~~~l~~Gad~VVigt~~~~~----~~~~~eli~ei~~---~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~  216 (316)
                      .+.++.++++|||.|.+|...+.-    ..+..+-+++.++   ..| .++.+.+.....++            .-..+.
T Consensus        13 ~e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g-~kvyvt~n~i~~e~------------el~~~~   79 (443)
T PRK15452         13 LKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALG-KKFYVVVNIAPHNA------------KLKTFI   79 (443)
T ss_pred             HHHHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcC-CEEEEEecCcCCHH------------HHHHHH
Confidence            588999999999999998765431    1233455555543   344 45666665321110            011355


Q ss_pred             HHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhc-CCCcEEEEeC--CCCHHHHHHHHHhCCCcCEEEEccchhh
Q 021156          217 ERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKY-SPIPVTYAGG--VTTMADLEKIKVAGIGRVDVTVGSALDI  293 (316)
Q Consensus       217 e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~-~~iPVIasGG--I~s~eDi~~l~~~G~g~~gVivG~Al~~  293 (316)
                      +..+.+.+.|++.+++.+..           ++..+++. .++|+.++-.  +.+...+..+.+.|  ++.|++.+=+  
T Consensus        80 ~~l~~l~~~gvDgvIV~d~G-----------~l~~~ke~~p~l~ih~stqlni~N~~a~~f~~~lG--~~rvvLSrEL--  144 (443)
T PRK15452         80 RDLEPVIAMKPDALIMSDPG-----------LIMMVREHFPEMPIHLSVQANAVNWATVKFWQQMG--LTRVILSREL--  144 (443)
T ss_pred             HHHHHHHhCCCCEEEEcCHH-----------HHHHHHHhCCCCeEEEEecccCCCHHHHHHHHHCC--CcEEEECCcC--
Confidence            66778889999999887653           45555553 4788988764  67888888899988  8888888665  


Q ss_pred             ccCcccHHHHHHHHHh
Q 021156          294 FGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       294 ~~g~~~~~~~~~~~~~  309 (316)
                           +++|+.+..++
T Consensus       145 -----sl~EI~~i~~~  155 (443)
T PRK15452        145 -----SLEEIEEIRQQ  155 (443)
T ss_pred             -----CHHHHHHHHhh
Confidence                 78998887644

>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family

Probab=95.15  E-value=0.19  Score=44.76  Aligned_cols=116  Identities=20%  Similarity=0.189  Sum_probs=65.9

Q ss_pred             HHHHHHHHcCCCEEEe--CCeeecCCC--CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHH
Q 021156          145 DNSLSYIEEGATHVIV--TSYVFNNGQ--MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVL  220 (316)
Q Consensus       145 e~~~~~l~~Gad~VVi--gt~~~~~~~--~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~  220 (316)
                      .+++.+++.|||-|-+  .-..+.++.  ...+.+.++++... .     +-+|      .+.-.+-..  .-.....++
T Consensus        73 ~eve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~-g-----~~lk------vI~e~~~l~--~~~i~~a~r  138 (203)
T cd00959          73 AEAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACG-G-----APLK------VILETGLLT--DEEIIKACE  138 (203)
T ss_pred             HHHHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcC-C-----CeEE------EEEecCCCC--HHHHHHHHH
Confidence            5689999999997544  222222211  01344555555442 1     1111      111111111  113555678


Q ss_pred             HHHHcCCCEEEEeecCCcccc-CCCCHH---HHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhC
Q 021156          221 DFLASYADEFLVHGVDVEGKK-LGIDDE---LVALLGKYSPIPVTYAGGVTTMADLEKIKVAG  279 (316)
Q Consensus       221 ~~~~~Ga~~ilvtdi~~dG~~-~G~d~e---li~~l~~~~~iPVIasGGI~s~eDi~~l~~~G  279 (316)
                      ...+.|++.+= |+   .|.. .|...+   .+++..+ .++||-++||+++.+++.++..+|
T Consensus       139 ia~e~GaD~IK-Ts---TG~~~~~at~~~v~~~~~~~~-~~v~ik~aGGikt~~~~l~~~~~g  196 (203)
T cd00959         139 IAIEAGADFIK-TS---TGFGPGGATVEDVKLMKEAVG-GRVGVKAAGGIRTLEDALAMIEAG  196 (203)
T ss_pred             HHHHhCCCEEE-cC---CCCCCCCCCHHHHHHHHHHhC-CCceEEEeCCCCCHHHHHHHHHhC
Confidence            88899999652 32   2332 333444   4444444 578999999999999999999998

DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.

>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain

Probab=95.14  E-value=0.063  Score=52.61  Aligned_cols=92  Identities=16%  Similarity=0.178  Sum_probs=65.4

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCC---------c------ccHHHHHHHHH-hCCCcEEEecCCC-HHHHHHHHHcC-C
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGAD---------P------LSKAAAIEALH-AYPGGLQVGGGIN-SDNSLSYIEEG-A  155 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~---------~------~~~~~i~~~v~-~~~~pl~vGGGIr-~e~~~~~l~~G-a  155 (316)
                      +-+++++.+.++|++.+++-   +.         .      .......+.++ .+++|+++-|||+ .++++++++.| |
T Consensus       253 ~~~~~~~~l~~~gvD~l~vs---~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~g~~  329 (382)
T cd02931         253 EGLKAAKILEEAGYDALDVD---AGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVDVPVIMAGRMEDPELASEAINEGIA  329 (382)
T ss_pred             HHHHHHHHHHHhCCCEEEeC---CCCCcccccccCCccCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHcCCC
Confidence            34578888888887766653   21         0      01112223343 5789999999998 59999999976 9


Q ss_pred             CEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeee
Q 021156          156 THVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSC  193 (316)
Q Consensus       156 d~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~  193 (316)
                      |.|.+|-.++.|    |++++++.+-- .+.|..++-+
T Consensus       330 D~V~~gR~~lad----P~l~~k~~~g~-~~~i~~Ci~C  362 (382)
T cd02931         330 DMISLGRPLLAD----PDVVNKIRRGR-FKNIRPCISC  362 (382)
T ss_pred             CeeeechHhHhC----ccHHHHHHcCC-cccCcCChhh
Confidence            999999999998    99999997632 2346556554

Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.

>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=95.12  E-value=0.034  Score=53.31  Aligned_cols=71  Identities=15%  Similarity=0.124  Sum_probs=51.7

Q ss_pred             HHHHHHHHcCCCcceEEEecCC-----------cccHHHHHHHHH---hCCCcEEEecCCC-HHHHHHHHHcCCCEEEeC
Q 021156           97 EFANLYKEDGLTGGHAIMLGAD-----------PLSKAAAIEALH---AYPGGLQVGGGIN-SDNSLSYIEEGATHVIVT  161 (316)
Q Consensus        97 e~a~~~~~~G~~~l~lvDLda~-----------~~~~~~i~~~v~---~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVig  161 (316)
                      |.++.+.++|++.+.+=-=.+.           -+....+.++.+   ..++|++.+|||+ +-|+-+++.+|||.|.+|
T Consensus       163 e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~gvpiIADGGi~~sGDI~KAlaaGAd~VMlG  242 (346)
T PRK05096        163 EMVEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQIVSDGGCTVPGDVAKAFGGGADFVMLG  242 (346)
T ss_pred             HHHHHHHHcCCCEEEEcccCCccccCccccccChhHHHHHHHHHHHHHHcCCCEEecCCcccccHHHHHHHcCCCEEEeC
Confidence            5889999999996554111110           123444555543   4689999999999 699999999999999999


Q ss_pred             CeeecC
Q 021156          162 SYVFNN  167 (316)
Q Consensus       162 t~~~~~  167 (316)
                      +.+-..
T Consensus       243 sllAGt  248 (346)
T PRK05096        243 GMLAGH  248 (346)
T ss_pred             hhhcCc
Confidence            987553

>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic

Probab=95.12  E-value=0.073  Score=51.07  Aligned_cols=72  Identities=15%  Similarity=0.113  Sum_probs=52.2

Q ss_pred             CHHHHHHHHHHcCCCcceEE----------EecCCc-ccHHHHHHHHH---hCCCcEEEecCCC-HHHHHHHHHcCCCEE
Q 021156           94 SAAEFANLYKEDGLTGGHAI----------MLGADP-LSKAAAIEALH---AYPGGLQVGGGIN-SDNSLSYIEEGATHV  158 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lv----------DLda~~-~~~~~i~~~v~---~~~~pl~vGGGIr-~e~~~~~l~~Gad~V  158 (316)
                      +| +.|+.+.++|++.+.+=          .+++.. +....+.++.+   ..++|++.+|||| ..|+-+++.+||+.|
T Consensus       160 T~-e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd~V  238 (343)
T TIGR01305       160 TG-EMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGADFV  238 (343)
T ss_pred             CH-HHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCCEE
Confidence            45 47888889999976553          122222 33444555554   2468999999999 699999999999999


Q ss_pred             EeCCeeec
Q 021156          159 IVTSYVFN  166 (316)
Q Consensus       159 Vigt~~~~  166 (316)
                      .+|+.+-.
T Consensus       239 MlG~llAG  246 (343)
T TIGR01305       239 MLGGMFAG  246 (343)
T ss_pred             EECHhhhC
Confidence            99976544

A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.

>TIGR02708 L_lactate_ox L-lactate oxidase

Probab=95.12  E-value=0.059  Score=52.56  Aligned_cols=70  Identities=19%  Similarity=0.169  Sum_probs=49.3

Q ss_pred             HHHHHHHHcCCCcceEEEecC-----CcccHHHHHHHHHhC--CCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeeec
Q 021156           97 EFANLYKEDGLTGGHAIMLGA-----DPLSKAAAIEALHAY--PGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        97 e~a~~~~~~G~~~l~lvDLda-----~~~~~~~i~~~v~~~--~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      +.|+...++|++++.+-.-.+     .+.....+.++...+  .+||++.||||. .|+.+++..||+.|.+|-.++.
T Consensus       240 eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av~~~i~vi~dGGIr~g~Dv~KaLalGAd~V~igR~~l~  317 (367)
T TIGR02708       240 EDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFDSGVRRGQHVFKALASGADLVALGRPVIY  317 (367)
T ss_pred             HHHHHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHHhCCCCcEEeeCCcCCHHHHHHHHHcCCCEEEEcHHHHH
Confidence            477778888988654433222     122334455554444  489999999995 9999999999999999987554

Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.

>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]

Probab=95.12  E-value=0.54  Score=44.20  Aligned_cols=175  Identities=18%  Similarity=0.127  Sum_probs=104.5

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCC------------cccHHHH----HHHHHhCCCcEEEec--CC----CH-HHHHHH
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGAD------------PLSKAAA----IEALHAYPGGLQVGG--GI----NS-DNSLSY  150 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~------------~~~~~~i----~~~v~~~~~pl~vGG--GI----r~-e~~~~~  150 (316)
                      ||. -|+..++.|++.++   +++.            .....++    .++...+++|+.|+.  |.    +. +.+..+
T Consensus        27 d~~-sA~la~~aGF~al~---~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~~lPv~vD~dtGfG~~~nvartV~~~  102 (289)
T COG2513          27 DAG-SALLAERAGFKALY---LSGAGVAASLGLPDLGITTLDEVLADARRITDAVDLPVLVDIDTGFGEALNVARTVREL  102 (289)
T ss_pred             CHH-HHHHHHHcCCeEEE---eccHHHHHhcCCCccccccHHHHHHHHHHHHhhcCCceEEeccCCCCcHHHHHHHHHHH
Confidence            676 78888888988554   4432            1123333    334445789998863  33    33 669999


Q ss_pred             HHcCCCEEEeCCeeec------CC-C-CC-HHHHHHHHHHhcCce-EEEeeeeeecCCeeEEEeCCcceecccCHHHHHH
Q 021156          151 IEEGATHVIVTSYVFN------NG-Q-MD-LERLKDLVRVVGKQR-LVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVL  220 (316)
Q Consensus       151 l~~Gad~VVigt~~~~------~~-~-~~-~eli~ei~~~~G~~~-IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~  220 (316)
                      .++|+.-+-|=-....      +| + ++ .+.+.++....-..+ .-+-|-.         ++..|....-.+.++.++
T Consensus       103 ~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~A---------RTda~~~~~ld~AI~Ra~  173 (289)
T COG2513         103 EQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIA---------RTDALLVEGLDDAIERAQ  173 (289)
T ss_pred             HHcCcceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEe---------ehHHHHhccHHHHHHHHH
Confidence            9999987766333322      11 1 12 244555544331100 0111111         222222111125788999


Q ss_pred             HHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcE---EEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          221 DFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPV---TYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       221 ~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPV---IasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      .+.+.|++.|....+.        +.+.++++++.+++|+   +...|-.-.-++.+|.++|  +..|+.|-..
T Consensus       174 AY~eAGAD~if~~al~--------~~e~i~~f~~av~~pl~~N~t~~g~tp~~~~~~L~~~G--v~~V~~~~~~  237 (289)
T COG2513         174 AYVEAGADAIFPEALT--------DLEEIRAFAEAVPVPLPANITEFGKTPLLTVAELAELG--VKRVSYGLTA  237 (289)
T ss_pred             HHHHcCCcEEccccCC--------CHHHHHHHHHhcCCCeeeEeeccCCCCCcCHHHHHhcC--ceEEEECcHH
Confidence            9999999998755543        4688999998887554   4455655555677888888  8889988766

>PTZ00333 triosephosphate isomerase; Provisional

Probab=95.09  E-value=0.24  Score=45.92  Aligned_cols=149  Identities=15%  Similarity=0.130  Sum_probs=84.1

Q ss_pred             HHHHHHHcCCCEEEeCCeeecC--CCCCHHHHHHHHHHhcC-ceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH
Q 021156          146 NSLSYIEEGATHVIVTSYVFNN--GQMDLERLKDLVRVVGK-QRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF  222 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~~~~~--~~~~~eli~ei~~~~G~-~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~  222 (316)
                      ....+.++||+.|+||=.-++.  ++-|...-+++...... =..++++.--. ..    +..+ .  +.--+...++..
T Consensus        81 S~~mL~d~G~~~viiGHSERR~~f~Etd~~I~~Kv~~al~~gl~pIlCvGE~~-~~----~~~~-~--~~~~v~~Ql~~~  152 (255)
T PTZ00333         81 SAEMLKDLGINWTILGHSERRQYFGETNEIVAQKVKNALENGLKVILCIGETL-EE----REAG-Q--TSDVLSKQLEAI  152 (255)
T ss_pred             CHHHHHHcCCCEEEECcccccCcCCCCcHHHHHHHHHHHHCCCEEEEEcCCCH-HH----HhCC-C--HHHHHHHHHHHH
Confidence            3788889999999999765543  33344444555444421 23455554210 00    0000 0  000011111111


Q ss_pred             HHcCC-----CEE--EEeecCCccccCCCCHHHHH----HHhh----------cCCCcEEEEeCCCCHHHHHHHHHhCCC
Q 021156          223 LASYA-----DEF--LVHGVDVEGKKLGIDDELVA----LLGK----------YSPIPVTYAGGVTTMADLEKIKVAGIG  281 (316)
Q Consensus       223 ~~~Ga-----~~i--lvtdi~~dG~~~G~d~eli~----~l~~----------~~~iPVIasGGI~s~eDi~~l~~~G~g  281 (316)
                      .+ ++     ..+  -|-.+..-|+...++.+.++    .+++          ..++||+++|+|..-+...-+...+  
T Consensus       153 l~-~v~~~~~~~iiIAYEPvWAIGtg~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~~~ILYGGSV~~~N~~~l~~~~~--  229 (255)
T PTZ00333        153 VK-KVSDEAWDNIVIAYEPVWAIGTGKVATPEQAQEVHAFIRKWLAEKVGADVAEATRIIYGGSVNEKNCKELIKQPD--  229 (255)
T ss_pred             Hh-cCCHHHcceEEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhcccccccceEEEcCCCCHHHHHHHhcCCC--
Confidence            11 22     233  35677888887766665443    2332          1258999999998876666555555  


Q ss_pred             cCEEEEccchhhccCcccHHHHHHHHHh
Q 021156          282 RVDVTVGSALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       282 ~~gVivG~Al~~~~g~~~~~~~~~~~~~  309 (316)
                      ++|+.||+|.  +. . .|.++++.+++
T Consensus       230 vDG~LvG~as--l~-~-~f~~Ii~~~~~  253 (255)
T PTZ00333        230 IDGFLVGGAS--LK-P-DFVDIIKSAEQ  253 (255)
T ss_pred             CCEEEEehHh--hh-h-hHHHHHHHHhh
Confidence            9999999999  76 4 68788776543

>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional

Probab=95.06  E-value=0.05  Score=49.54  Aligned_cols=35  Identities=29%  Similarity=0.398  Sum_probs=32.1

Q ss_pred             CCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecC
Q 021156          133 PGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNN  167 (316)
Q Consensus       133 ~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~  167 (316)
                      ...++|.|||+.+.+..+.++|||.+|+|+..++.
T Consensus       173 ~~~I~VdGGI~~~ti~~~~~aGad~iVvGsaI~~a  207 (228)
T PTZ00170        173 HLNIQVDGGINLETIDIAADAGANVIVAGSSIFKA  207 (228)
T ss_pred             cCeEEECCCCCHHHHHHHHHcCCCEEEEchHHhCC
Confidence            36799999999999999999999999999998864

>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=95.04  E-value=0.35  Score=46.45  Aligned_cols=96  Identities=18%  Similarity=0.143  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCC--CEEEEeecCCccccCCCCHHHH
Q 021156          172 LERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYA--DEFLVHGVDVEGKKLGIDDELV  249 (316)
Q Consensus       172 ~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga--~~ilvtdi~~dG~~~G~d~eli  249 (316)
                      +|....+.+..-+..+.+.+-+-                ...+..+.+.++.+.|+  +.+ ..|.+. |.. -.=.+++
T Consensus        71 ~e~~~~~~r~~~~~~l~v~~~vg----------------~~~~~~~~~~~Lv~ag~~~d~i-~iD~a~-gh~-~~~~e~I  131 (326)
T PRK05458         71 PEARIPFIKDMHEQGLIASISVG----------------VKDDEYDFVDQLAAEGLTPEYI-TIDIAH-GHS-DSVINMI  131 (326)
T ss_pred             HHHHHHHHHhccccccEEEEEec----------------CCHHHHHHHHHHHhcCCCCCEE-EEECCC-Cch-HHHHHHH
Confidence            77666666665444455554432                11235688899999965  854 455543 221 1124578


Q ss_pred             HHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEc
Q 021156          250 ALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVG  288 (316)
Q Consensus       250 ~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG  288 (316)
                      +++++..+-+.+..|.+.|.+++..+.++|  ++.+.+|
T Consensus       132 ~~ir~~~p~~~vi~g~V~t~e~a~~l~~aG--ad~i~vg  168 (326)
T PRK05458        132 QHIKKHLPETFVIAGNVGTPEAVRELENAG--ADATKVG  168 (326)
T ss_pred             HHHHhhCCCCeEEEEecCCHHHHHHHHHcC--cCEEEEC
Confidence            888877653446667799999999999998  8988887

>PRK09250 fructose-bisphosphate aldolase; Provisional

Probab=95.04  E-value=0.22  Score=48.12  Aligned_cols=150  Identities=17%  Similarity=0.068  Sum_probs=79.7

Q ss_pred             HHHHHHHHcCCCEEEe----CCeeecCCCCCHHHHHHHH---HHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHH
Q 021156          145 DNSLSYIEEGATHVIV----TSYVFNNGQMDLERLKDLV---RVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDE  217 (316)
Q Consensus       145 e~~~~~l~~Gad~VVi----gt~~~~~~~~~~eli~ei~---~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e  217 (316)
                      .+++.+++.||+-|.+    |+.....  + .+.+.+++   ++||= -+++.+-.|  ++  .+.... .-.+..+++.
T Consensus       150 ~sVedAlrLGAdAV~~tvy~Gs~~E~~--m-l~~l~~i~~ea~~~Gl-Plv~~~YpR--G~--~i~~~~-d~~~~~d~Ia  220 (348)
T PRK09250        150 ASVEDALRLGAVAVGATIYFGSEESRR--Q-IEEISEAFEEAHELGL-ATVLWSYLR--NS--AFKKDG-DYHTAADLTG  220 (348)
T ss_pred             ecHHHHHHCCCCEEEEEEecCCHHHHH--H-HHHHHHHHHHHHHhCC-CEEEEeccc--Cc--ccCCcc-cccccHHHHH
Confidence            4699999999997654    4332211  1 22233333   33441 233333333  22  121111 0011122333


Q ss_pred             -HHHHHHHcCCCEEEEeecC-Ccc------------ccCC----CCHHHHHHHhhcC---CCcEEEEeCCCC-HHH----
Q 021156          218 -RVLDFLASYADEFLVHGVD-VEG------------KKLG----IDDELVALLGKYS---PIPVTYAGGVTT-MAD----  271 (316)
Q Consensus       218 -~a~~~~~~Ga~~ilvtdi~-~dG------------~~~G----~d~eli~~l~~~~---~iPVIasGGI~s-~eD----  271 (316)
                       .++...++|++-+=+..-. .++            .+.+    ...+.++.+.+.+   ++||+.+||-+. .++    
T Consensus       221 ~AaRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~~~~e~L~~  300 (348)
T PRK09250        221 QANHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGGASKGEDDLLDA  300 (348)
T ss_pred             HHHHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeCCCCCCHHHHHHH
Confidence             3577788999965321111 111            1112    2345667776666   899999999883 333    


Q ss_pred             HHHH---HHhCCCcCEEEEccchhhccCcccHHHHHHHHHh
Q 021156          272 LEKI---KVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       272 i~~l---~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~~  309 (316)
                      ++.+   ++.|  +.|+++||-+  |..+  .+|.++++++
T Consensus       301 v~~a~~~i~aG--a~Gv~iGRNI--fQ~~--~~ea~~~~~~  335 (348)
T PRK09250        301 VRTAVINKRAG--GMGLIIGRKA--FQRP--MAEGVKLLNA  335 (348)
T ss_pred             HHHHHHhhhcC--Ccchhhchhh--hcCC--cHHHHHHHHH
Confidence            3444   4545  8999999999  6554  4566776665

>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4

Probab=94.98  E-value=0.34  Score=47.06  Aligned_cols=139  Identities=12%  Similarity=-0.031  Sum_probs=92.2

Q ss_pred             HHHHHHHHcCCCEEEe--CCe--eecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHH
Q 021156          145 DNSLSYIEEGATHVIV--TSY--VFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVL  220 (316)
Q Consensus       145 e~~~~~l~~Gad~VVi--gt~--~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~  220 (316)
                      +.++++.+.|.+.+=+  +..  ..+    +.+.++.+.+.+|+ .+.+.+|+.          .+|.-.   +..++++
T Consensus       149 ~~a~~~~~~Gf~~~Kik~~~~~~~~~----di~~i~~vR~~~G~-~~~l~vDan----------~~~~~~---~A~~~~~  210 (368)
T cd03329         149 DFAEECKALGYRAIKLHPWGPGVVRR----DLKACLAVREAVGP-DMRLMHDGA----------HWYSRA---DALRLGR  210 (368)
T ss_pred             HHHHHHHHcCCCEEEEecCCchhHHH----HHHHHHHHHHHhCC-CCeEEEECC----------CCcCHH---HHHHHHH
Confidence            3466777889886533  321  123    37899999999984 567788983          245421   3567777


Q ss_pred             HHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCC-HHHHHHHHHhCCCcCEEEEccchhhccCccc
Q 021156          221 DFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTT-MADLEKIKVAGIGRVDVTVGSALDIFGGNLA  299 (316)
Q Consensus       221 ~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s-~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~  299 (316)
                      .+.+.++..+       +.-....|++.++++++.+++||.+.--+.+ ++++.++.+.+ .++.+.+--..  .+|-..
T Consensus       211 ~l~~~~l~~i-------EeP~~~~d~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~~-a~d~v~~d~~~--~GGit~  280 (368)
T cd03329         211 ALEELGFFWY-------EDPLREASISSYRWLAEKLDIPILGTEHSRGALESRADWVLAG-ATDFLRADVNL--VGGITG  280 (368)
T ss_pred             HhhhcCCCeE-------eCCCCchhHHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHhC-CCCEEecCccc--cCCHHH
Confidence            7877765532       1122334788889999989999877777888 99999999998 35555555444  455555


Q ss_pred             HHHHHHHHHhhc
Q 021156          300 YKDVVAWHAQQE  311 (316)
Q Consensus       300 ~~~~~~~~~~~~  311 (316)
                      ..++.+++.++.
T Consensus       281 ~~~ia~~a~~~g  292 (368)
T cd03329         281 AMKTAHLAEAFG  292 (368)
T ss_pred             HHHHHHHHHHcC
Confidence            566666655543

Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.

>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes

Probab=94.98  E-value=0.2  Score=46.85  Aligned_cols=66  Identities=17%  Similarity=0.242  Sum_probs=48.7

Q ss_pred             HHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhc----CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchh
Q 021156          217 ERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKY----SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALD  292 (316)
Q Consensus       217 e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~----~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~  292 (316)
                      +.+.+..+.|++.+.+-.+.         .+.++++.+.    .++|+.++|||. .+.+.++.+.|  ++++.+|+.. 
T Consensus       192 eea~~A~~~gaD~I~ld~~~---------~e~l~~~v~~i~~~~~i~i~asGGIt-~~ni~~~a~~G--ad~Isvgal~-  258 (269)
T cd01568         192 EEAEEALEAGADIIMLDNMS---------PEELKEAVKLLKGLPRVLLEASGGIT-LENIRAYAETG--VDVISTGALT-  258 (269)
T ss_pred             HHHHHHHHcCCCEEEECCCC---------HHHHHHHHHHhccCCCeEEEEECCCC-HHHHHHHHHcC--CCEEEEcHHH-
Confidence            55667778899988763332         2445554433    378999999986 68899999998  9999998766 


Q ss_pred             hccC
Q 021156          293 IFGG  296 (316)
Q Consensus       293 ~~~g  296 (316)
                       |.-
T Consensus       259 -~s~  261 (269)
T cd01568         259 -HSA  261 (269)
T ss_pred             -cCC
Confidence             654

It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.

>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4

Probab=94.96  E-value=0.045  Score=50.90  Aligned_cols=72  Identities=17%  Similarity=0.028  Sum_probs=47.6

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCC---c-cc---HHHHHHHHHh-CCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCee
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGAD---P-LS---KAAAIEALHA-YPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYV  164 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~---~-~~---~~~i~~~v~~-~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~  164 (316)
                      .|.+-.+...+..-..+|++-..+.   . ..   ....++.+++ .+.|+.+|=||+ .++++++. .|||-|||||++
T Consensus       151 t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGSa~  229 (259)
T PF00290_consen  151 TPEERIKKIAKQASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHTDLPVAVGFGISTPEQAKKLA-AGADGVIVGSAF  229 (259)
T ss_dssp             S-HHHHHHHHHH-SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTTSS-EEEESSS-SHHHHHHHH-TTSSEEEESHHH
T ss_pred             CCHHHHHHHHHhCCcEEEeeccCCCCCCcccchHHHHHHHHHHHhhcCcceEEecCCCCHHHHHHHH-ccCCEEEECHHH
Confidence            4556667766654455566655543   1 11   2334455553 679999999998 59999999 999999999998


Q ss_pred             ec
Q 021156          165 FN  166 (316)
Q Consensus       165 ~~  166 (316)
                      .+
T Consensus       230 v~  231 (259)
T PF00290_consen  230 VK  231 (259)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....

>KOG0538 consensus Glycolate oxidase [Energy production and conversion]

Probab=94.94  E-value=0.1  Score=49.34  Aligned_cols=92  Identities=20%  Similarity=0.180  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHcCCCEEEEeecCCccccCCC-CHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          215 LDERVLDFLASYADEFLVHGVDVEGKKLGI-DDELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       215 ~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~-d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      .-|.|+.+.+.|++.|++-.=-.-+.-..+ ..+.+.++.+.+  ++||..-|||++=.|+.+++.+|  +.+|.|||-+
T Consensus       233 t~eDA~~Ave~G~~GIIVSNHGgRQlD~vpAtI~~L~Evv~aV~~ri~V~lDGGVR~G~DVlKALALG--Ak~VfiGRP~  310 (363)
T KOG0538|consen  233 TGEDARKAVEAGVAGIIVSNHGGRQLDYVPATIEALPEVVKAVEGRIPVFLDGGVRRGTDVLKALALG--AKGVFIGRPI  310 (363)
T ss_pred             ccHHHHHHHHhCCceEEEeCCCccccCcccchHHHHHHHHHHhcCceEEEEecCcccchHHHHHHhcc--cceEEecCch
Confidence            347888999999999987431111111233 677888887665  69999999999999999999999  8999999954


Q ss_pred             hhc----cCcccHHHHHHHHHh
Q 021156          292 DIF----GGNLAYKDVVAWHAQ  309 (316)
Q Consensus       292 ~~~----~g~~~~~~~~~~~~~  309 (316)
                       .|    +|.=-.+++++.++.
T Consensus       311 -v~gLA~~Ge~GV~~vl~iL~~  331 (363)
T KOG0538|consen  311 -VWGLAAKGEAGVKKVLDILRD  331 (363)
T ss_pred             -heeeccccchhHHHHHHHHHH
Confidence             12    355556777665544

>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial

Probab=94.94  E-value=0.26  Score=47.20  Aligned_cols=69  Identities=17%  Similarity=0.184  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHcC--CCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEc
Q 021156          215 LDERVLDFLASY--ADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVG  288 (316)
Q Consensus       215 ~~e~a~~~~~~G--a~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG  288 (316)
                      -.+.+..+.+.|  ++. ++.|.. .|.. -.=++.++++++..+.|.+..|.+.+.++.+.+.+.|  ++++.||
T Consensus        95 ~~~r~~~lv~a~~~~d~-i~~D~a-hg~s-~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aG--ad~I~V~  165 (321)
T TIGR01306        95 EYEFVTQLAEEALTPEY-ITIDIA-HGHS-NSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAG--ADATKVG  165 (321)
T ss_pred             HHHHHHHHHhcCCCCCE-EEEeCc-cCch-HHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcC--cCEEEEC
Confidence            457788888888  454 445543 2221 1235678888888888999999999999999999998  8999988

A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.

>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5

Probab=94.93  E-value=0.018  Score=51.49  Aligned_cols=36  Identities=31%  Similarity=0.479  Sum_probs=30.8

Q ss_pred             CCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecC
Q 021156          132 YPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNN  167 (316)
Q Consensus       132 ~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~  167 (316)
                      .+..++|+|||+.+.+..+.++|||.+|+||+.+++
T Consensus       165 ~~~~I~vDGGI~~~~~~~~~~aGad~~V~Gs~iF~~  200 (201)
T PF00834_consen  165 LDFEIEVDGGINEENIKQLVEAGADIFVAGSAIFKA  200 (201)
T ss_dssp             CGSEEEEESSESTTTHHHHHHHT--EEEESHHHHTS
T ss_pred             CceEEEEECCCCHHHHHHHHHcCCCEEEECHHHhCC
Confidence            458899999999999999999999999999988763

1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....

>KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]

Probab=94.87  E-value=0.069  Score=50.64  Aligned_cols=90  Identities=22%  Similarity=0.217  Sum_probs=69.1

Q ss_pred             CHHHHHHHHHHcCCCEEEE--eecCC------------ccccCCC-----CHHHHHHHhhc--CCCcEEEEeCCCCHHHH
Q 021156          214 YLDERVLDFLASYADEFLV--HGVDV------------EGKKLGI-----DDELVALLGKY--SPIPVTYAGGVTTMADL  272 (316)
Q Consensus       214 ~~~e~a~~~~~~Ga~~ilv--tdi~~------------dG~~~G~-----d~eli~~l~~~--~~iPVIasGGI~s~eDi  272 (316)
                      ++.|++.-+.+...+.+|+  |-+++            -|-++|+     ..+.++.+-..  ..||||.+|||+|=.|.
T Consensus       267 el~dia~v~kk~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG~plk~~st~~vR~mY~lt~g~IpiIG~GGV~SG~DA  346 (398)
T KOG1436|consen  267 ELKDIALVVKKLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSGPPLKPISTNTVRAMYTLTRGKIPIIGCGGVSSGKDA  346 (398)
T ss_pred             HHHHHHHHHHHhCccceeecCceeecCccccccccccccCCCCCCccchhHHHHHHHHHHhccCCCceEeecCccccHhH
Confidence            4667777788888888887  44555            2444565     34566666554  47999999999999999


Q ss_pred             HHHHHhCCCcCEEEEccchhhccCcccHHHHHHH
Q 021156          273 EKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAW  306 (316)
Q Consensus       273 ~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~  306 (316)
                      .+-.++|  +.-|-+++|+ -|+|+-.++++++.
T Consensus       347 ~EkiraG--ASlvQlyTal-~yeGp~i~~kIk~E  377 (398)
T KOG1436|consen  347 YEKIRAG--ASLVQLYTAL-VYEGPAIIEKIKRE  377 (398)
T ss_pred             HHHHhcC--chHHHHHHHH-hhcCchhHHHHHHH
Confidence            9999998  7888899998 78999878777664

>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=94.87  E-value=0.14  Score=47.94  Aligned_cols=66  Identities=20%  Similarity=0.182  Sum_probs=50.4

Q ss_pred             HHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHh--C---CCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeec
Q 021156           96 AEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHA--Y---PGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        96 ~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~--~---~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      +|-|+...++|++   ++-||.  .+.+.+.++++.  .   ++.+.+-|||+.+.+++|.+.|+|.+++|+....
T Consensus       192 leea~~A~~~GaD---iI~LDn--~~~e~l~~~v~~~~~~~~~~~ieAsGgIt~~ni~~ya~~GvD~IsvG~l~~s  262 (273)
T PRK05848        192 LEEAKNAMNAGAD---IVMCDN--MSVEEIKEVVAYRNANYPHVLLEASGNITLENINAYAKSGVDAISSGSLIHQ  262 (273)
T ss_pred             HHHHHHHHHcCCC---EEEECC--CCHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHHcCCCEEEeChhhcC
Confidence            3566666678887   556765  355666666653  2   4569999999889999999999999999998764

>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]

Probab=94.83  E-value=0.054  Score=52.68  Aligned_cols=75  Identities=20%  Similarity=0.167  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHcCCCEEEEeecCCccccCCC-CHHHHHHHhhcCC--CcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          215 LDERVLDFLASYADEFLVHGVDVEGKKLGI-DDELVALLGKYSP--IPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       215 ~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~-d~eli~~l~~~~~--iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      ..+.+....+.|++.|.+..-..-.--.|+ -.+.+.++.+.++  +||+++|||++-.|+.+++.+|  ++.|.+|+.+
T Consensus       228 ~~~D~~~a~~tg~~~I~vsnhggrqlD~g~st~~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALG--A~~v~igrp~  305 (360)
T COG1304         228 APEDAAGAGGTGADGIEVSNHGGRQLDWGISTADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALG--ADAVGIGRPF  305 (360)
T ss_pred             CHHHHHhhccCCceEEEEEcCCCccccCCCChHHHHHHHHHHhCCCeEEEecCCCCCHHHHHHHHHhC--CchhhhhHHH
Confidence            335566667777777765331111111344 6778888887765  8999999999999999999999  8999999977

>PRK08227 autoinducer 2 aldolase; Validated

Probab=94.79  E-value=0.32  Score=45.37  Aligned_cols=68  Identities=16%  Similarity=0.019  Sum_probs=47.1

Q ss_pred             HHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCC-HHHH----HHHHHhCCCcCEEEEccchh
Q 021156          218 RVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTT-MADL----EKIKVAGIGRVDVTVGSALD  292 (316)
Q Consensus       218 ~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s-~eDi----~~l~~~G~g~~gVivG~Al~  292 (316)
                      .++...++|++-+= +.-.      |   +.++++.+.+++||+++||=+. .+++    +..++.|  +.|+.+||-+|
T Consensus       163 aaRiaaELGADiVK-~~y~------~---~~f~~vv~a~~vPVviaGG~k~~~~~~L~~v~~ai~aG--a~Gv~~GRNIf  230 (264)
T PRK08227        163 ATRIAAEMGAQIIK-TYYV------E---EGFERITAGCPVPIVIAGGKKLPERDALEMCYQAIDEG--ASGVDMGRNIF  230 (264)
T ss_pred             HHHHHHHHcCCEEe-cCCC------H---HHHHHHHHcCCCcEEEeCCCCCCHHHHHHHHHHHHHcC--Cceeeechhhh
Confidence            46778899999653 2222      2   5677888888999999999884 2223    3344445  99999999995


Q ss_pred             hccCc
Q 021156          293 IFGGN  297 (316)
Q Consensus       293 ~~~g~  297 (316)
                      -++++
T Consensus       231 Q~~~p  235 (264)
T PRK08227        231 QSEHP  235 (264)
T ss_pred             ccCCH
Confidence            55443

>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate

Probab=94.77  E-value=0.24  Score=45.57  Aligned_cols=132  Identities=17%  Similarity=0.133  Sum_probs=77.3

Q ss_pred             HHHHHHHcCCCEEEeCCeeecC--CCCCHHHHHHHHHHhcC-ceEEEeeeeeecCCeeEEEeCCcceecccCHHHHH-HH
Q 021156          146 NSLSYIEEGATHVIVTSYVFNN--GQMDLERLKDLVRVVGK-QRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERV-LD  221 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~~~~~--~~~~~eli~ei~~~~G~-~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a-~~  221 (316)
                      .++.+.++|++.|+||=.-++.  ++-+...-+++...... =..++++.-.. .    -+      ..+ ...+.+ .+
T Consensus        76 S~~mL~d~G~~~viiGHSERR~~f~Et~~~i~~Kv~~a~~~gl~pIvCiGE~~-~----~r------~~~-~~~~~~~~Q  143 (242)
T cd00311          76 SAEMLKDAGAKYVIIGHSERRQYFGETDEDVAKKVKAALEAGLTPILCVGETL-E----ER------EAG-KTEEVVAAQ  143 (242)
T ss_pred             CHHHHHHcCCCEEEeCcccccCcCCCCcHHHHHHHHHHHHCCCEEEEEeCCCH-H----HH------HcC-CHHHHHHHH
Confidence            4788889999999999765542  23334444444443311 23556664210 0    00      001 111222 22


Q ss_pred             HHHc--C---CCEE--EEeecCCccccCCCCHH----HHHHHhh----c-----CCCcEEEEeCCCCHHHHHHHHHhCCC
Q 021156          222 FLAS--Y---ADEF--LVHGVDVEGKKLGIDDE----LVALLGK----Y-----SPIPVTYAGGVTTMADLEKIKVAGIG  281 (316)
Q Consensus       222 ~~~~--G---a~~i--lvtdi~~dG~~~G~d~e----li~~l~~----~-----~~iPVIasGGI~s~eDi~~l~~~G~g  281 (316)
                      +...  +   ...+  -|-.+..-||..-+..+    ..+.+++    .     .++||+++|+|.. +++.++++.+ +
T Consensus       144 l~~~l~~~~~~~~~iIAYEPvWAIGtG~~as~~~~~ev~~~ir~~l~~~~~~~~~~~~IlYGGSV~~-~N~~~l~~~~-~  221 (242)
T cd00311         144 LAAVLAGVEDLAPVVIAYEPVWAIGTGKTASPEQAQEVHAFIRKLLAELYGEVAEKVRILYGGSVNP-ENAAELLAQP-D  221 (242)
T ss_pred             HHHHHhcchhhcCeEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcccccCceeEEECCCCCH-HHHHHHhcCC-C
Confidence            2111  1   1223  35677888887766544    2233332    1     2589999999999 9999999998 6


Q ss_pred             cCEEEEccch
Q 021156          282 RVDVTVGSAL  291 (316)
Q Consensus       282 ~~gVivG~Al  291 (316)
                      ++|+.||+|.
T Consensus       222 vDG~LVG~As  231 (242)
T cd00311         222 IDGVLVGGAS  231 (242)
T ss_pred             CCEEEeehHh
Confidence            9999999999

The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.

>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases

Probab=94.77  E-value=3.8  Score=39.91  Aligned_cols=200  Identities=17%  Similarity=0.077  Sum_probs=106.0

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHhCCCcEEEecCCC--HHHHHHHHHcCCCEEEe--CCeeecC-
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAYPGGLQVGGGIN--SDNSLSYIEEGATHVIV--TSYVFNN-  167 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~~~pl~vGGGIr--~e~~~~~l~~Gad~VVi--gt~~~~~-  167 (316)
                      .+-+++|+.+.+.|++.+-+-.--. .+...+.++.+.+...+..+.+-.|  .++++++.++|++.|-+  .+.-... 
T Consensus        22 ~~k~~ia~~L~~~Gv~~IEvG~p~~-~~~~~e~i~~i~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i~i~~~~Sd~~~~  100 (363)
T TIGR02090        22 EQKVEIARKLDELGVDVIEAGFPIA-SEGEFEAIKKISQEGLNAEICSLARALKKDIDKAIDCGVDSIHTFIATSPIHLK  100 (363)
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCCC-ChHHHHHHHHHHhcCCCcEEEEEcccCHHHHHHHHHcCcCEEEEEEcCCHHHHH
Confidence            4567899999999977655422111 1122223333333233344555556  58899999999998665  3211100 


Q ss_pred             ---CCCC---HHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCcccc
Q 021156          168 ---GQMD---LERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKK  241 (316)
Q Consensus       168 ---~~~~---~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~  241 (316)
                         ++..   .+.+.+..+........+.+.+-          ..+.. ..-.+.+.++.+.+.|+++|.+-|  ..|.+
T Consensus       101 ~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~e----------da~r~-~~~~l~~~~~~~~~~g~~~i~l~D--T~G~~  167 (363)
T TIGR02090       101 YKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAE----------DATRT-DIDFLIKVFKRAEEAGADRINIAD--TVGVL  167 (363)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe----------ecCCC-CHHHHHHHHHHHHhCCCCEEEEeC--CCCcc
Confidence               0000   22233333222111112222221          11111 112467788899999999886665  34666


Q ss_pred             CCCCH-HHHHHHhhcCCCcEEEEeC----CCCHHHHHHHHHhCC-CcCEEEEccchhhccCcccHHHHHHHHHh
Q 021156          242 LGIDD-ELVALLGKYSPIPVTYAGG----VTTMADLEKIKVAGI-GRVDVTVGSALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       242 ~G~d~-eli~~l~~~~~iPVIasGG----I~s~eDi~~l~~~G~-g~~gVivG~Al~~~~g~~~~~~~~~~~~~  309 (316)
                      ..... ++++.+.+..++|+-+-+.    .... -...+.+.|. -+++.+-|-+=  -.|+.++++++..++.
T Consensus       168 ~P~~v~~li~~l~~~~~~~l~~H~Hnd~GlA~A-N~laA~~aGa~~vd~s~~GlGe--raGN~~lE~vv~~L~~  238 (363)
T TIGR02090       168 TPQKMEELIKKLKENVKLPISVHCHNDFGLATA-NSIAGVKAGAEQVHVTVNGIGE--RAGNAALEEVVMALKY  238 (363)
T ss_pred             CHHHHHHHHHHHhcccCceEEEEecCCCChHHH-HHHHHHHCCCCEEEEEeecccc--ccccccHHHHHHHHHH
Confidence            65544 4777787766677655443    2222 2334445673 24555555444  4477888888776654

Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=94.75  E-value=0.13  Score=52.03  Aligned_cols=70  Identities=21%  Similarity=0.205  Sum_probs=49.7

Q ss_pred             HHHHHHHHcCCCcceEEE----------ecCC-cccHHHHHHHHH---hCCCcEEEecCCC-HHHHHHHHHcCCCEEEeC
Q 021156           97 EFANLYKEDGLTGGHAIM----------LGAD-PLSKAAAIEALH---AYPGGLQVGGGIN-SDNSLSYIEEGATHVIVT  161 (316)
Q Consensus        97 e~a~~~~~~G~~~l~lvD----------Lda~-~~~~~~i~~~v~---~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVig  161 (316)
                      +-|+.+.++|++.+.+=.          +++. .+....+.++.+   ..++|++..|||+ ..|+.+++.+||+.|++|
T Consensus       281 e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~~G  360 (486)
T PRK05567        281 EAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVMLG  360 (486)
T ss_pred             HHHHHHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEEC
Confidence            577888889998765411          1111 122334444433   3579999999998 599999999999999999


Q ss_pred             Ceeec
Q 021156          162 SYVFN  166 (316)
Q Consensus       162 t~~~~  166 (316)
                      +.+-.
T Consensus       361 ~~~a~  365 (486)
T PRK05567        361 SMLAG  365 (486)
T ss_pred             ccccc
Confidence            98755

>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain

Probab=94.73  E-value=0.066  Score=51.36  Aligned_cols=71  Identities=20%  Similarity=0.149  Sum_probs=49.6

Q ss_pred             HHHHHHHHHcCCCcceEEEecCC-------------------------cccHHHHHHHHHhC-CCcEEEecCCCH-HHHH
Q 021156           96 AEFANLYKEDGLTGGHAIMLGAD-------------------------PLSKAAAIEALHAY-PGGLQVGGGINS-DNSL  148 (316)
Q Consensus        96 ~e~a~~~~~~G~~~l~lvDLda~-------------------------~~~~~~i~~~v~~~-~~pl~vGGGIr~-e~~~  148 (316)
                      .+.|+.+.+.|++.+.+--..++                         .+....+.++.+.+ ++||++.||||+ +|+.
T Consensus       192 ~~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipIiasGGIr~~~dv~  271 (326)
T cd02811         192 RETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALPDLPLIASGGIRNGLDIA  271 (326)
T ss_pred             HHHHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccHHHHHHHHHHHcCCCcEEEECCCCCHHHHH
Confidence            47889999999886654211010                         00112333333345 799999999995 9999


Q ss_pred             HHHHcCCCEEEeCCeeec
Q 021156          149 SYIEEGATHVIVTSYVFN  166 (316)
Q Consensus       149 ~~l~~Gad~VVigt~~~~  166 (316)
                      +++..||+.|-+|+.++.
T Consensus       272 kal~lGAd~V~i~~~~L~  289 (326)
T cd02811         272 KALALGADLVGMAGPFLK  289 (326)
T ss_pred             HHHHhCCCEEEEcHHHHH
Confidence            999999999999997655

Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=94.67  E-value=0.074  Score=53.71  Aligned_cols=71  Identities=15%  Similarity=0.146  Sum_probs=51.6

Q ss_pred             HHHHHHHHcCCCcceEEE---------ec--CCcccHHHHHHHHH---hCCCcEEEecCCC-HHHHHHHHHcCCCEEEeC
Q 021156           97 EFANLYKEDGLTGGHAIM---------LG--ADPLSKAAAIEALH---AYPGGLQVGGGIN-SDNSLSYIEEGATHVIVT  161 (316)
Q Consensus        97 e~a~~~~~~G~~~l~lvD---------Ld--a~~~~~~~i~~~v~---~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVig  161 (316)
                      +-|+.+.++|++.+.+=-         .-  .+.+....+.++.+   ..++|++..|||+ ..|+.+++.+||+.|++|
T Consensus       280 ~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~ggi~~~~~~~~al~~ga~~v~~g  359 (479)
T PRK07807        280 EGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWADGGVRHPRDVALALAAGASNVMIG  359 (479)
T ss_pred             HHHHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHcCCCeeecc
Confidence            577888888988765210         00  01134444555554   4689999999998 699999999999999999


Q ss_pred             CeeecC
Q 021156          162 SYVFNN  167 (316)
Q Consensus       162 t~~~~~  167 (316)
                      +.+...
T Consensus       360 ~~~ag~  365 (479)
T PRK07807        360 SWFAGT  365 (479)
T ss_pred             HhhccC
Confidence            998764

>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]

Probab=94.64  E-value=0.09  Score=48.90  Aligned_cols=74  Identities=16%  Similarity=0.024  Sum_probs=52.9

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCC---c-c---cHHHHHHHHHh-CCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCe
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGAD---P-L---SKAAAIEALHA-YPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSY  163 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~---~-~---~~~~i~~~v~~-~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~  163 (316)
                      +.|.+..+...+..-..+|++-..+.   . .   .....++.+++ .+.|+.||=||+ .++++++.++ ||-||+||+
T Consensus       157 tt~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVGSA  235 (265)
T COG0159         157 TTPDERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYTDVPVLVGFGISSPEQAAQVAEA-ADGVIVGSA  235 (265)
T ss_pred             CCCHHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhcCCCeEEecCcCCHHHHHHHHHh-CCeEEEcHH
Confidence            45656667776654445566666543   1 1   12445555554 689999999999 5999999999 999999999


Q ss_pred             eecC
Q 021156          164 VFNN  167 (316)
Q Consensus       164 ~~~~  167 (316)
                      ..+-
T Consensus       236 iV~~  239 (265)
T COG0159         236 IVKI  239 (265)
T ss_pred             HHHH
Confidence            8753

>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure

Probab=94.64  E-value=0.097  Score=44.65  Aligned_cols=33  Identities=33%  Similarity=0.447  Sum_probs=29.9

Q ss_pred             HhCCCcEEEecCCCH-HHHHHHHHcCCCEEEeCC
Q 021156          130 HAYPGGLQVGGGINS-DNSLSYIEEGATHVIVTS  162 (316)
Q Consensus       130 ~~~~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt  162 (316)
                      +..++|+.++|||+. +++.++++.|||.|++|+
T Consensus       167 ~~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~vgs  200 (200)
T cd04722         167 RGSKVPVIAGGGINDPEDAAEALALGADGVIVGS  200 (200)
T ss_pred             hcCCCCEEEECCCCCHHHHHHHHHhCCCEEEecC
Confidence            356799999999996 999999999999999986

Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.

>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1

Probab=94.55  E-value=0.25  Score=47.39  Aligned_cols=76  Identities=16%  Similarity=0.047  Sum_probs=50.9

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCCc--c---c-HHHHHHHHH-hCCCcEEEecCCCH-HHHHHHHHcCCCEEEeCCee
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGADP--L---S-KAAAIEALH-AYPGGLQVGGGINS-DNSLSYIEEGATHVIVTSYV  164 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~~--~---~-~~~i~~~v~-~~~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~  164 (316)
                      +++. .|+...+.|+|.+.+-=-+++.  .   . ...+...++ .+++||+..|||.+ +++..++..||+-|.+||.+
T Consensus       144 ~s~~-~A~~a~~~G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~~iPViaAGGI~dg~~iaaal~lGA~gV~~GTrF  222 (330)
T PF03060_consen  144 TSVR-EARKAAKAGADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAVDIPVIAAGGIADGRGIAAALALGADGVQMGTRF  222 (330)
T ss_dssp             SSHH-HHHHHHHTT-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH-SS-EEEESS--SHHHHHHHHHCT-SEEEESHHH
T ss_pred             CCHH-HHHHhhhcCCCEEEEeccccCCCCCccccceeeHHHHHhhhcCCcEEEecCcCCHHHHHHHHHcCCCEeecCCeE
Confidence            3565 5677888899987777666541  1   1 334444444 57899999999975 88999999999999999999


Q ss_pred             ecCCC
Q 021156          165 FNNGQ  169 (316)
Q Consensus       165 ~~~~~  169 (316)
                      .-..|
T Consensus       223 l~t~E  227 (330)
T PF03060_consen  223 LATEE  227 (330)
T ss_dssp             HTSTT
T ss_pred             Eeccc
Confidence            86643

13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.

>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA

Probab=94.54  E-value=0.035  Score=52.86  Aligned_cols=80  Identities=20%  Similarity=0.256  Sum_probs=54.8

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCC-----cccHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHc-CCCEEEeCCeeec
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGAD-----PLSKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEE-GATHVIVTSYVFN  166 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~-----~~~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~-Gad~VVigt~~~~  166 (316)
                      +.+++++.+.++|++.+.|===...     ..+.+.+.++.+.+++|++.-|||. .+|+++.++. |||.|.+|..++.
T Consensus       139 ~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal~  218 (309)
T PF01207_consen  139 ETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVMIGRGALG  218 (309)
T ss_dssp             HHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEEESHHHCC
T ss_pred             HHHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEEEchhhhh
Confidence            4778999999999775443211111     2456666666667889999999998 5999999986 9999999999999


Q ss_pred             CCCCCHHHHHH
Q 021156          167 NGQMDLERLKD  177 (316)
Q Consensus       167 ~~~~~~eli~e  177 (316)
                      |    |.++.+
T Consensus       219 n----P~lf~~  225 (309)
T PF01207_consen  219 N----PWLFRE  225 (309)
T ss_dssp             -----CCHHCH
T ss_pred             c----CHHhhh
Confidence            8    888875

Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.

>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed

Probab=94.53  E-value=0.41  Score=44.47  Aligned_cols=97  Identities=12%  Similarity=0.033  Sum_probs=74.2

Q ss_pred             CCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCE
Q 021156          205 DRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVD  284 (316)
Q Consensus       205 ~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~g  284 (316)
                      .||.. ...++.++++.+.+.|++.+-+   -.|..+.|-+++.++.+++.+++||+.--=|.++-++..+...|  +++
T Consensus        63 ~g~i~-~~~~~~~~A~~~~~~GA~aisv---lte~~~f~g~~~~l~~v~~~v~iPvl~kdfi~~~~qi~~a~~~G--AD~  136 (260)
T PRK00278         63 KGVIR-EDFDPVEIAKAYEAGGAACLSV---LTDERFFQGSLEYLRAARAAVSLPVLRKDFIIDPYQIYEARAAG--ADA  136 (260)
T ss_pred             CCccC-CCCCHHHHHHHHHhCCCeEEEE---ecccccCCCCHHHHHHHHHhcCCCEEeeeecCCHHHHHHHHHcC--CCE
Confidence            46754 2347899999999999998732   23344555678999999998999999877788888999999998  898


Q ss_pred             EEEccchhhccCcccHHHHHHHHHhh
Q 021156          285 VTVGSALDIFGGNLAYKDVVAWHAQQ  310 (316)
Q Consensus       285 VivG~Al~~~~g~~~~~~~~~~~~~~  310 (316)
                      |.+.-+.  +. +-+++++++.++..
T Consensus       137 VlLi~~~--l~-~~~l~~li~~a~~l  159 (260)
T PRK00278        137 ILLIVAA--LD-DEQLKELLDYAHSL  159 (260)
T ss_pred             EEEEecc--CC-HHHHHHHHHHHHHc
Confidence            9888777  53 34677777666553

>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase

Probab=94.52  E-value=0.09  Score=50.94  Aligned_cols=71  Identities=20%  Similarity=0.171  Sum_probs=48.9

Q ss_pred             HHHHHHHHcCCCcceEEEecCC-----------cccHHHHHHHHH---hCCCcEEEecCCC-HHHHHHHHHcCCCEEEeC
Q 021156           97 EFANLYKEDGLTGGHAIMLGAD-----------PLSKAAAIEALH---AYPGGLQVGGGIN-SDNSLSYIEEGATHVIVT  161 (316)
Q Consensus        97 e~a~~~~~~G~~~l~lvDLda~-----------~~~~~~i~~~v~---~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVig  161 (316)
                      +.|+.+.++|++.+.+=-=.+.           -+....+.++.+   ..++||+.+|||+ +-|+-++|.+|||.|.+|
T Consensus       161 e~a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGGi~~sGDi~KAla~GAd~VMlG  240 (352)
T PF00478_consen  161 EGAKDLIDAGADAVKVGIGPGSICTTREVTGVGVPQLTAVYECAEAARDYGVPIIADGGIRTSGDIVKALAAGADAVMLG  240 (352)
T ss_dssp             HHHHHHHHTT-SEEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHHHHHCTTSEEEEESS-SSHHHHHHHHHTT-SEEEES
T ss_pred             HHHHHHHHcCCCEEEEeccCCcccccccccccCCcHHHHHHHHHHHhhhccCceeecCCcCcccceeeeeeecccceeec
Confidence            5888899999887655111111           122344555543   4789999999999 799999999999999999


Q ss_pred             CeeecC
Q 021156          162 SYVFNN  167 (316)
Q Consensus       162 t~~~~~  167 (316)
                      +.+-..
T Consensus       241 ~llAgt  246 (352)
T PF00478_consen  241 SLLAGT  246 (352)
T ss_dssp             TTTTTB
T ss_pred             hhhccC
Confidence            987543

These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=94.43  E-value=0.077  Score=51.91  Aligned_cols=70  Identities=17%  Similarity=0.148  Sum_probs=52.4

Q ss_pred             HHHHHHHHcCCCcceEEEecCC-----------cccHHHHHHHH---HhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeC
Q 021156           97 EFANLYKEDGLTGGHAIMLGAD-----------PLSKAAAIEAL---HAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVT  161 (316)
Q Consensus        97 e~a~~~~~~G~~~l~lvDLda~-----------~~~~~~i~~~v---~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVig  161 (316)
                      +.|+.+-++|+|++++=.=.+.           .+.-..+.+.+   +..++|++.+|||+ ..++-++|.+||+.|.+|
T Consensus       304 ~qa~nLI~aGaDgLrVGMGsGSiCiTqevma~GrpQ~TAVy~va~~A~q~gvpviADGGiq~~Ghi~KAl~lGAstVMmG  383 (503)
T KOG2550|consen  304 EQAANLIAAGADGLRVGMGSGSICITQKVMACGRPQGTAVYKVAEFANQFGVPCIADGGIQNVGHVVKALGLGASTVMMG  383 (503)
T ss_pred             HHHHHHHHccCceeEeccccCceeeeceeeeccCCcccchhhHHHHHHhcCCceeecCCcCccchhHhhhhcCchhheec
Confidence            6788888999999988554332           12223344443   45789999999998 699999999999999999


Q ss_pred             Ceeec
Q 021156          162 SYVFN  166 (316)
Q Consensus       162 t~~~~  166 (316)
                      +.+-.
T Consensus       384 ~lLAg  388 (503)
T KOG2550|consen  384 GLLAG  388 (503)
T ss_pred             ceeee
Confidence            87643

>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase

Probab=94.42  E-value=0.14  Score=49.05  Aligned_cols=70  Identities=21%  Similarity=0.270  Sum_probs=49.8

Q ss_pred             HHHHHHHHcCCCcceEEEecC------------CcccHHHHHHH---HHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEe
Q 021156           97 EFANLYKEDGLTGGHAIMLGA------------DPLSKAAAIEA---LHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIV  160 (316)
Q Consensus        97 e~a~~~~~~G~~~l~lvDLda------------~~~~~~~i~~~---v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVi  160 (316)
                      +.|+...++|++.+.+- +..            ..+....+.++   ++..++|++..|||+ ..++.+++.+||+.|.+
T Consensus       147 ~~A~~l~~aGaD~I~vg-~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~Vmi  225 (325)
T cd00381         147 EAARDLIDAGADGVKVG-IGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVML  225 (325)
T ss_pred             HHHHHHHhcCCCEEEEC-CCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEe
Confidence            57888888999976541 110            01222233333   334579999999998 59999999999999999


Q ss_pred             CCeeecC
Q 021156          161 TSYVFNN  167 (316)
Q Consensus       161 gt~~~~~  167 (316)
                      ||.+...
T Consensus       226 Gt~fa~t  232 (325)
T cd00381         226 GSLLAGT  232 (325)
T ss_pred             cchhccc
Confidence            9998764

IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.

>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit

Probab=94.27  E-value=0.68  Score=45.25  Aligned_cols=118  Identities=16%  Similarity=0.126  Sum_probs=78.4

Q ss_pred             cCHHHHHHHHH-HcCCCcceEEEecCCcc----c---HHH-HHHHHHhCCCcEEEecC---CC-HHHHHHHHHcCCC-EE
Q 021156           93 KSAAEFANLYK-EDGLTGGHAIMLGADPL----S---KAA-AIEALHAYPGGLQVGGG---IN-SDNSLSYIEEGAT-HV  158 (316)
Q Consensus        93 ~~p~e~a~~~~-~~G~~~l~lvDLda~~~----~---~~~-i~~~v~~~~~pl~vGGG---Ir-~e~~~~~l~~Gad-~V  158 (316)
                      +||.++++... ..|++.+.|-..++++.    .   -.. +.+...++++|++++|=   -. .+-+++.++.-.. +.
T Consensus       139 ~dP~~wak~~V~~~~aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~eVLeaaLe~~~G~kp  218 (389)
T TIGR00381       139 EDPAEWARKCVKEFGADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPLVLEKAAEVAEGERC  218 (389)
T ss_pred             cCHHHHHHHHHHHhCCCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHHHHHHHHHHhCCCCc
Confidence            46778888775 57899888888776532    1   112 23333468899999876   33 3557888876444 89


Q ss_pred             EeCCeeec-CCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCC--EEEE
Q 021156          159 IVTSYVFN-NGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYAD--EFLV  232 (316)
Q Consensus       159 Vigt~~~~-~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~--~ilv  232 (316)
                      +|+++..+ |    .+.+.+++.+||..-++-+.|-.   +               ...++.+.+.+.|+.  .|++
T Consensus       219 LL~SAt~e~N----y~~ia~lAk~yg~~Vvv~s~~Di---n---------------~ak~Ln~kL~~~Gv~~eDIVl  273 (389)
T TIGR00381       219 LLASANLDLD----YEKIANAAKKYGHVVLSWTIMDI---N---------------MQKTLNRYLLKRGLMPRDIVM  273 (389)
T ss_pred             EEEecCchhh----HHHHHHHHHHhCCeEEEEcCCcH---H---------------HHHHHHHHHHHcCCCHHHEEE
Confidence            99999988 6    88999999999742222231211   1               244566677888988  7654

This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.

>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=94.23  E-value=0.24  Score=43.70  Aligned_cols=71  Identities=15%  Similarity=0.216  Sum_probs=52.2

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCCcc-cHHHHHHHHHhC-CCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeec
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGADPL-SKAAAIEALHAY-PGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~~~-~~~~i~~~v~~~-~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      .+|.|+.+.+ +.|++.+.++-  +... ....+.++.... ++|+..=|||+.+++..++++||+.|.++|..++
T Consensus       113 ~t~~e~~~A~-~~Gadyv~~Fp--t~~~~G~~~l~~~~~~~~~ipvvaiGGI~~~n~~~~l~aGa~~vav~s~i~~  185 (187)
T PRK07455        113 LTPTEIVTAW-QAGASCVKVFP--VQAVGGADYIKSLQGPLGHIPLIPTGGVTLENAQAFIQAGAIAVGLSGQLFP  185 (187)
T ss_pred             CCHHHHHHHH-HCCCCEEEECc--CCcccCHHHHHHHHhhCCCCcEEEeCCCCHHHHHHHHHCCCeEEEEehhccc
Confidence            4688776655 47899888732  2211 233344444445 5999999999999999999999999999998775

>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]

Probab=94.22  E-value=0.084  Score=51.45  Aligned_cols=86  Identities=17%  Similarity=0.163  Sum_probs=65.6

Q ss_pred             CHHHHHHHHHHcC-CCcceEEEecCC--c-cc-H-----HHHHHHHH-hCCCcEEEecCCC-HHHHHHHHHcC-CCEEEe
Q 021156           94 SAAEFANLYKEDG-LTGGHAIMLGAD--P-LS-K-----AAAIEALH-AYPGGLQVGGGIN-SDNSLSYIEEG-ATHVIV  160 (316)
Q Consensus        94 ~p~e~a~~~~~~G-~~~l~lvDLda~--~-~~-~-----~~i~~~v~-~~~~pl~vGGGIr-~e~~~~~l~~G-ad~VVi  160 (316)
                      +..++++.+.+.| ++.+|+.--+-.  . .. .     ....+.++ .+.+|+++-|+|+ .++++..++.| ||.|.+
T Consensus       238 e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~  317 (363)
T COG1902         238 EAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVRIPVIAVGGINDPEQAEEILASGRADLVAM  317 (363)
T ss_pred             HHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCCEEEe
Confidence            5678999999999 687777765431  1 11 1     01222233 4679999999998 59999999998 999999


Q ss_pred             CCeeecCCCCCHHHHHHHHHHhc
Q 021156          161 TSYVFNNGQMDLERLKDLVRVVG  183 (316)
Q Consensus       161 gt~~~~~~~~~~eli~ei~~~~G  183 (316)
                      |..++.|    |+++.++.+..+
T Consensus       318 gR~~lad----P~~~~k~~~g~~  336 (363)
T COG1902         318 GRPFLAD----PDLVLKAAEGRE  336 (363)
T ss_pred             chhhhcC----ccHHHHHHcCCC
Confidence            9999998    999999988664

>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional

Probab=94.20  E-value=1.9  Score=43.36  Aligned_cols=154  Identities=16%  Similarity=0.135  Sum_probs=95.8

Q ss_pred             HHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCee
Q 021156          122 KAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKY  200 (316)
Q Consensus       122 ~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~  200 (316)
                      ...+.+..+..++-..|  -++ .+++++++++|++.+-|++.-+.+-+++++...++...++++.++++-         
T Consensus       148 l~~l~~~a~~lGl~~lv--Evh~~~El~~al~~~a~iiGiNnRdL~t~~vd~~~~~~l~~~ip~~~~~vse---------  216 (454)
T PRK09427        148 YRQLAAVAHSLNMGVLT--EVSNEEELERAIALGAKVIGINNRNLRDLSIDLNRTRELAPLIPADVIVISE---------  216 (454)
T ss_pred             HHHHHHHHHHcCCcEEE--EECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhCCCCcEEEEe---------
Confidence            34455555566654444  356 488999999999999999887776667889999998887544333332         


Q ss_pred             EEEeCCcceecccCHHHHHHHHHHcCCCEEEE-eecCCccccCCCCH-HHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHh
Q 021156          201 AIVTDRWQKFSDVYLDERVLDFLASYADEFLV-HGVDVEGKKLGIDD-ELVALLGKYSPIPVTYAGGVTTMADLEKIKVA  278 (316)
Q Consensus       201 ~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilv-tdi~~dG~~~G~d~-eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~  278 (316)
                                +++...+.++.+.+ |++.+++ +.+     |+-+|. +.++++..   ..|=. .|+++.+|+..+.++
T Consensus       217 ----------SGI~t~~d~~~~~~-~~davLiG~~l-----m~~~d~~~~~~~L~~---~~vKI-CGit~~eda~~a~~~  276 (454)
T PRK09427        217 ----------SGIYTHAQVRELSP-FANGFLIGSSL-----MAEDDLELAVRKLIL---GENKV-CGLTRPQDAKAAYDA  276 (454)
T ss_pred             ----------CCCCCHHHHHHHHh-cCCEEEECHHH-----cCCCCHHHHHHHHhc---ccccc-CCCCCHHHHHHHHhC
Confidence                      12222344555654 7999987 332     223443 34555532   12222 469999999999999


Q ss_pred             CCCcCEEEEccchhhccCcccHHHHHHHHHh
Q 021156          279 GIGRVDVTVGSALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       279 G~g~~gVivG~Al~~~~g~~~~~~~~~~~~~  309 (316)
                      |.+.-|.+.-. -  -.+.++++++.++.+.
T Consensus       277 GaD~lGfIf~~-~--SpR~V~~~~a~~i~~~  304 (454)
T PRK09427        277 GAVYGGLIFVE-K--SPRYVSLEQAQEIIAA  304 (454)
T ss_pred             CCCEEeeEeCC-C--CCCCCCHHHHHHHHHh
Confidence            95444444210 0  1234778887776654

>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]

Probab=94.10  E-value=0.3  Score=43.30  Aligned_cols=49  Identities=22%  Similarity=0.280  Sum_probs=38.1

Q ss_pred             CCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHh
Q 021156          133 PGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVV  182 (316)
Q Consensus       133 ~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~  182 (316)
                      +.-++|+||+..+.+.+..++||+.+|.||+.+..+.. -+.+..+.+.+
T Consensus       169 ~l~ievDGGv~~~ti~~~a~AGAN~iVaGsavf~a~d~-~~vi~~lr~~v  217 (224)
T KOG3111|consen  169 NLDIEVDGGVGPSTIDKAAEAGANMIVAGSAVFGAADP-SDVISLLRNSV  217 (224)
T ss_pred             CceEEecCCcCcchHHHHHHcCCCEEEecceeecCCCH-HHHHHHHHHHH
Confidence            46789999999999999999999999999999975321 24555554443

>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed

Probab=94.04  E-value=0.47  Score=42.56  Aligned_cols=71  Identities=17%  Similarity=0.166  Sum_probs=51.8

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHhC--CCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeec
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAY--PGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~--~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      .+|.|+.+.+ +.|++.+.++-  +.......+.+.....  ++|+..=|||+.+++..++++|++.|.++|..++
T Consensus       112 ~t~~E~~~A~-~~Gad~vk~Fp--a~~~G~~~l~~l~~~~~~~ipvvaiGGI~~~n~~~~~~aGa~~vav~s~l~~  184 (206)
T PRK09140        112 ATPTEAFAAL-RAGAQALKLFP--ASQLGPAGIKALRAVLPPDVPVFAVGGVTPENLAPYLAAGAAGFGLGSALYR  184 (206)
T ss_pred             CCHHHHHHHH-HcCCCEEEECC--CCCCCHHHHHHHHhhcCCCCeEEEECCCCHHHHHHHHHCCCeEEEEehHhcc
Confidence            4677765544 57888777532  2223334444444445  4999999999999999999999999999999876

>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional

Probab=94.01  E-value=5.1  Score=37.12  Aligned_cols=194  Identities=13%  Similarity=0.063  Sum_probs=115.0

Q ss_pred             ecCCccCHHHHHHHHHHcCCCcceEEEec-CC------c---ccHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHcCCC
Q 021156           88 NFESDKSAAEFANLYKEDGLTGGHAIMLG-AD------P---LSKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEEGAT  156 (316)
Q Consensus        88 ~~~~~~~p~e~a~~~~~~G~~~l~lvDLd-a~------~---~~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad  156 (316)
                      ..++..--.++|+...+.|+..+.=--.+ .+      +   .....+.+.+++.++|+..  =+- .++++.+.+ .+|
T Consensus        24 ~vEs~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~~~T--ev~d~~~v~~~~e-~vd  100 (250)
T PRK13397         24 SIESYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLLSVS--EIMSERQLEEAYD-YLD  100 (250)
T ss_pred             ccCCHHHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCCCEEE--eeCCHHHHHHHHh-cCC
Confidence            34434456678888777775322211111 11      0   1244555666678888776  344 477888877 699


Q ss_pred             EEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecC
Q 021156          157 HVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVD  236 (316)
Q Consensus       157 ~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~  236 (316)
                      .+=||+....|    .++++++.+. |  +   .+-+|  .|.       ..  +-.+....++.+.+.|...+++..+.
T Consensus       101 ilqIgs~~~~n----~~LL~~va~t-g--k---PVilk--~G~-------~~--t~~e~~~A~e~i~~~Gn~~i~L~eRg  159 (250)
T PRK13397        101 VIQVGARNMQN----FEFLKTLSHI-D--K---PILFK--RGL-------MA--TIEEYLGALSYLQDTGKSNIILCERG  159 (250)
T ss_pred             EEEECcccccC----HHHHHHHHcc-C--C---eEEEe--CCC-------CC--CHHHHHHHHHHHHHcCCCeEEEEccc
Confidence            99999999987    9999888753 2  1   12222  221       11  11134455677778898777654332


Q ss_pred             CccccC----CCCHHHHHHHhhcCCCcEEEE----eCCCCH--HHHHHHHHhCCCcCEEEEcc------chhhccCc--c
Q 021156          237 VEGKKL----GIDDELVALLGKYSPIPVTYA----GGVTTM--ADLEKIKVAGIGRVDVTVGS------ALDIFGGN--L  298 (316)
Q Consensus       237 ~dG~~~----G~d~eli~~l~~~~~iPVIas----GGI~s~--eDi~~l~~~G~g~~gVivG~------Al~~~~g~--~  298 (316)
                      --+.-.    -.|+..+..+++..+.||++.    +|.+..  .-.......|  ++|++|-+      |+  ..++  +
T Consensus       160 ~~~Y~~~~~n~~dl~ai~~lk~~~~lPVivd~SHs~G~r~~v~~~a~AAvA~G--AdGl~IE~H~~P~~A~--sD~~q~l  235 (250)
T PRK13397        160 VRGYDVETRNMLDIMAVPIIQQKTDLPIIVDVSHSTGRRDLLLPAAKIAKAVG--ANGIMMEVHPDPDHAL--SDAAQQI  235 (250)
T ss_pred             cCCCCCccccccCHHHHHHHHHHhCCCeEECCCCCCcccchHHHHHHHHHHhC--CCEEEEEecCCccccc--CchhhhC
Confidence            222221    347777888888788999884    555442  2234444556  99999874      55  3333  7


Q ss_pred             cHHHHHHHHHh
Q 021156          299 AYKDVVAWHAQ  309 (316)
Q Consensus       299 ~~~~~~~~~~~  309 (316)
                      +++++.+++.+
T Consensus       236 ~~~~l~~l~~~  246 (250)
T PRK13397        236 DYKQLEQLGQE  246 (250)
T ss_pred             CHHHHHHHHHH
Confidence            77777766654

>cd00452 KDPG_aldolase KDPG and KHG aldolase

Probab=94.00  E-value=1.5  Score=38.39  Aligned_cols=105  Identities=16%  Similarity=0.006  Sum_probs=66.4

Q ss_pred             HHHHHHHcCCCcceEEEecCCcccHHHHHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHH
Q 021156           98 FANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKD  177 (316)
Q Consensus        98 ~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~e  177 (316)
                      -+....+.|++.+|.      +.....+.+..+..+.++++|.- +.+++.++.++|||.+-+......    .++.++.
T Consensus        68 ~~~~a~~~Ga~~i~~------p~~~~~~~~~~~~~~~~~i~gv~-t~~e~~~A~~~Gad~i~~~p~~~~----g~~~~~~  136 (190)
T cd00452          68 QADAAIAAGAQFIVS------PGLDPEVVKAANRAGIPLLPGVA-TPTEIMQALELGADIVKLFPAEAV----GPAYIKA  136 (190)
T ss_pred             HHHHHHHcCCCEEEc------CCCCHHHHHHHHHcCCcEECCcC-CHHHHHHHHHCCCCEEEEcCCccc----CHHHHHH
Confidence            334455567776652      22345566777777888887333 469999999999999987432222    3888888


Q ss_pred             HHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEee
Q 021156          178 LVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHG  234 (316)
Q Consensus       178 i~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtd  234 (316)
                      +.+.++ ..-++++     +|              ++ .+-+.++.+.|++.+.+.+
T Consensus       137 l~~~~~-~~p~~a~-----GG--------------I~-~~n~~~~~~~G~~~v~v~s  172 (190)
T cd00452         137 LKGPFP-QVRFMPT-----GG--------------VS-LDNAAEWLAAGVVAVGGGS  172 (190)
T ss_pred             HHhhCC-CCeEEEe-----CC--------------CC-HHHHHHHHHCCCEEEEEch
Confidence            877663 2111111     22              32 3677788899999876543

This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=93.97  E-value=0.13  Score=52.34  Aligned_cols=69  Identities=20%  Similarity=0.136  Sum_probs=47.1

Q ss_pred             HHHHHHHHcCCCcceEEEecCC------------cccHHHHHHHHHh-------CC--CcEEEecCCC-HHHHHHHHHcC
Q 021156           97 EFANLYKEDGLTGGHAIMLGAD------------PLSKAAAIEALHA-------YP--GGLQVGGGIN-SDNSLSYIEEG  154 (316)
Q Consensus        97 e~a~~~~~~G~~~l~lvDLda~------------~~~~~~i~~~v~~-------~~--~pl~vGGGIr-~e~~~~~l~~G  154 (316)
                      +-|+.+.++|++.+.+ =..++            .+....+.++.++       .+  +|++.+|||| ..|+-+++.+|
T Consensus       296 e~a~~li~aGAd~I~v-g~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla~G  374 (502)
T PRK07107        296 EGFRYLAEAGADFVKV-GIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAMG  374 (502)
T ss_pred             HHHHHHHHcCCCEEEE-CCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHHcC
Confidence            3666666778887665 11111            1223334444432       24  8999999999 69999999999


Q ss_pred             CCEEEeCCeeec
Q 021156          155 ATHVIVTSYVFN  166 (316)
Q Consensus       155 ad~VVigt~~~~  166 (316)
                      ||.|.+|+.+-.
T Consensus       375 A~~vm~G~~~ag  386 (502)
T PRK07107        375 ADFIMLGRYFAR  386 (502)
T ss_pred             CCeeeeChhhhc
Confidence            999999997654

>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3

Probab=93.97  E-value=0.93  Score=43.82  Aligned_cols=139  Identities=13%  Similarity=0.095  Sum_probs=91.5

Q ss_pred             HHHHHHHHcCCCEE--EeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH
Q 021156          145 DNSLSYIEEGATHV--IVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF  222 (316)
Q Consensus       145 e~~~~~l~~Gad~V--Vigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~  222 (316)
                      ++++++.+.|...+  =+|.....|    .+.++.+.+.+|+ .+-+.+|+.          .+|...   +..++++.+
T Consensus       144 ~~a~~~~~~Gf~~~Kikvg~~~~~d----~~~v~~vRe~~G~-~~~l~vDaN----------~~~~~~---~A~~~~~~l  205 (352)
T cd03328         144 EQLSGWVAQGIPRVKMKIGRDPRRD----PDRVAAARRAIGP-DAELFVDAN----------GAYSRK---QALALARAF  205 (352)
T ss_pred             HHHHHHHHCCCCEEEeecCCCHHHH----HHHHHHHHHHcCC-CCeEEEECC----------CCCCHH---HHHHHHHHH
Confidence            34677778887743  346432333    7899999999985 567889973          246432   366788888


Q ss_pred             HHcCCCEEEEeecCCccccCCCCHHHHHHHhhc--CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccH
Q 021156          223 LASYADEFLVHGVDVEGKKLGIDDELVALLGKY--SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAY  300 (316)
Q Consensus       223 ~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~--~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~  300 (316)
                      ++.++..+       +.=...-|++.++++++.  +++||.+.=-+.+..|+.++.+.+ .++-+.+--+-  .+|-...
T Consensus       206 ~~~~~~~~-------EeP~~~~d~~~~~~l~~~~~~~iPIa~gE~~~~~~~~~~li~~~-a~div~~d~~~--~GGit~~  275 (352)
T cd03328         206 ADEGVTWF-------EEPVSSDDLAGLRLVRERGPAGMDIAAGEYAYTLAYFRRLLEAH-AVDVLQADVTR--CGGVTGF  275 (352)
T ss_pred             HHhCcchh-------hCCCChhhHHHHHHHHhhCCCCCCEEecccccCHHHHHHHHHcC-CCCEEecCccc--cCCHHHH
Confidence            87766422       111222378899999998  789988766678999999999987 25544444333  4454445


Q ss_pred             HHHHHHHHhhc
Q 021156          301 KDVVAWHAQQE  311 (316)
Q Consensus       301 ~~~~~~~~~~~  311 (316)
                      .++.+++.++.
T Consensus       276 ~~ia~~A~a~g  286 (352)
T cd03328         276 LQAAALAAAHH  286 (352)
T ss_pred             HHHHHHHHHcC
Confidence            66666655543

Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.

>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]

Probab=93.92  E-value=0.22  Score=44.87  Aligned_cols=76  Identities=21%  Similarity=0.140  Sum_probs=51.2

Q ss_pred             ccCHHHHHHHHHHcCCCcceE---EEecCCcccH-HHHHHHHHh---CCCcEEEecCCCHHHHHHHHHcCCCEEEeCCee
Q 021156           92 DKSAAEFANLYKEDGLTGGHA---IMLGADPLSK-AAAIEALHA---YPGGLQVGGGINSDNSLSYIEEGATHVIVTSYV  164 (316)
Q Consensus        92 ~~~p~e~a~~~~~~G~~~l~l---vDLda~~~~~-~~i~~~v~~---~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~  164 (316)
                      ..+|.+.++.+.+.|.+-+.+   +|..+....+ ...++.+++   .+.++-|.|||+.+++..+...|++.+|+|.+.
T Consensus       116 ~~~~~~~~~~l~~~gvd~~~~H~g~D~q~~G~~~~~~~l~~ik~~~~~g~~vAVaGGI~~~~i~~~~~~~~~ivIvGraI  195 (217)
T COG0269         116 VWDPEQRAKWLKELGVDQVILHRGRDAQAAGKSWGEDDLEKIKKLSDLGAKVAVAGGITPEDIPLFKGIGADIVIVGRAI  195 (217)
T ss_pred             CCCHHHHHHHHHHhCCCEEEEEecccHhhcCCCccHHHHHHHHHhhccCceEEEecCCCHHHHHHHhcCCCCEEEECchh
Confidence            357988888777777552221   2222222222 233333332   347999999999999999999999999999987


Q ss_pred             ecC
Q 021156          165 FNN  167 (316)
Q Consensus       165 ~~~  167 (316)
                      .+.
T Consensus       196 t~a  198 (217)
T COG0269         196 TGA  198 (217)
T ss_pred             cCC
Confidence            654

>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=93.91  E-value=0.55  Score=44.12  Aligned_cols=68  Identities=15%  Similarity=0.153  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhh----c---CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEE
Q 021156          215 LDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGK----Y---SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTV  287 (316)
Q Consensus       215 ~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~----~---~~iPVIasGGI~s~eDi~~l~~~G~g~~gViv  287 (316)
                      ..+.+.++.+.|++.|.+-..+         .+.++++.+    .   .++.+.+|||| +.+.+.++.+.|  +|.+.+
T Consensus       191 ~leea~~a~~agaDiI~LDn~~---------~e~l~~~v~~l~~~~~~~~~~leaSGGI-~~~ni~~yA~tG--vD~Is~  258 (278)
T PRK08385        191 SLEDALKAAKAGADIIMLDNMT---------PEEIREVIEALKREGLRERVKIEVSGGI-TPENIEEYAKLD--VDVISL  258 (278)
T ss_pred             CHHHHHHHHHcCcCEEEECCCC---------HHHHHHHHHHHHhcCcCCCEEEEEECCC-CHHHHHHHHHcC--CCEEEe
Confidence            3577888899999977654443         334444332    1   35789999999 889999999998  999999


Q ss_pred             ccchhhccC
Q 021156          288 GSALDIFGG  296 (316)
Q Consensus       288 G~Al~~~~g  296 (316)
                      |+..  |..
T Consensus       259 galt--~sa  265 (278)
T PRK08385        259 GALT--HSV  265 (278)
T ss_pred             Chhh--cCC
Confidence            9877  643

>PRK07695 transcriptional regulator TenI; Provisional

Probab=93.86  E-value=0.34  Score=42.85  Aligned_cols=72  Identities=17%  Similarity=0.106  Sum_probs=50.0

Q ss_pred             CHHHHHHHHHHcCCCcceE--EEecCCc-----ccHHHHHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeec
Q 021156           94 SAAEFANLYKEDGLTGGHA--IMLGADP-----LSKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~l--vDLda~~-----~~~~~i~~~v~~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      ++. .++...+.|++.+.+  +.-+...     .....+.+..+.+++|+.+-|||+.+++..+++.|++.|.+++....
T Consensus       104 s~e-~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~~ipvia~GGI~~~~~~~~~~~Ga~gvav~s~i~~  182 (201)
T PRK07695        104 SLE-EAIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSDIARALSIPVIAIGGITPENTRDVLAAGVSGIAVMSGIFS  182 (201)
T ss_pred             CHH-HHHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHcCCCEEEEEHHHhc
Confidence            444 566677788886521  1111111     12334444445578999999999889999999999999999999875

>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=93.83  E-value=0.23  Score=46.59  Aligned_cols=66  Identities=21%  Similarity=0.203  Sum_probs=49.6

Q ss_pred             HHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHhC--CCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeec
Q 021156           96 AEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAY--PGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        96 ~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~--~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      ++.++...++|++.   +-||.  ...+.+.++++..  .+|+.+-|||+.+.+..+.++|+|.+.+|+..+.
T Consensus       199 leea~eA~~~gaD~---I~LD~--~~~e~l~~~v~~~~~~i~leAsGGIt~~ni~~~a~tGvD~Isvg~lt~s  266 (277)
T PRK05742        199 LDELRQALAAGADI---VMLDE--LSLDDMREAVRLTAGRAKLEASGGINESTLRVIAETGVDYISIGAMTKD  266 (277)
T ss_pred             HHHHHHHHHcCCCE---EEECC--CCHHHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHcCCCEEEEChhhcC
Confidence            34555566778774   45553  3445566666543  6899999999999999999999999999997765

>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]

Probab=93.81  E-value=0.19  Score=48.22  Aligned_cols=80  Identities=19%  Similarity=0.189  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHcCCCcceEEEecCC-----cccHHHHHHHHHhCC-CcEEEecCCC-HHHHHHHHH-cCCCEEEeCCeeec
Q 021156           95 AAEFANLYKEDGLTGGHAIMLGAD-----PLSKAAAIEALHAYP-GGLQVGGGIN-SDNSLSYIE-EGATHVIVTSYVFN  166 (316)
Q Consensus        95 p~e~a~~~~~~G~~~l~lvDLda~-----~~~~~~i~~~v~~~~-~pl~vGGGIr-~e~~~~~l~-~Gad~VVigt~~~~  166 (316)
                      ..++++..++.|++.++|==-.+.     +.+.+.+.+..+.++ +|++.-|+|. .+++++.++ .|||.|.+|-..+.
T Consensus       154 ~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga~~  233 (323)
T COG0042         154 ALEIARILEDAGADALTVHGRTRAQGYLGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIGRGALG  233 (323)
T ss_pred             HHHHHHHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEEcHHHcc
Confidence            667999999988776554222111     235666666555677 9999999998 599999888 57999999999999


Q ss_pred             CCCCCHHHHHHH
Q 021156          167 NGQMDLERLKDL  178 (316)
Q Consensus       167 ~~~~~~eli~ei  178 (316)
                      |    |.++.++
T Consensus       234 n----P~l~~~i  241 (323)
T COG0042         234 N----PWLFRQI  241 (323)
T ss_pred             C----CcHHHHH
Confidence            8    9999888

>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate

Probab=93.78  E-value=0.54  Score=41.67  Aligned_cols=157  Identities=18%  Similarity=0.181  Sum_probs=82.7

Q ss_pred             cCCC-HHHHHHHHHcCCCEEEeCCeeecC-C-CCCHHHHHHHHHHhcCceEEEeeeeeec--------CCeeEEEeCCcc
Q 021156          140 GGIN-SDNSLSYIEEGATHVIVTSYVFNN-G-QMDLERLKDLVRVVGKQRLVLDLSCRKK--------DGKYAIVTDRWQ  208 (316)
Q Consensus       140 GGIr-~e~~~~~l~~Gad~VVigt~~~~~-~-~~~~eli~ei~~~~G~~~IvvslD~k~~--------~g~~~v~~~gw~  208 (316)
                      .|++ .+|+..+.++|+|.+=+  .+..+ + .++++.++++.+...+..+.+..|-...        -+--.|..+|-.
T Consensus         4 CGi~~~~da~~~~~~g~d~~Gf--i~~~~S~R~v~~~~a~~l~~~~~~~~VgVf~~~~~~~I~~~~~~~~ld~vQLHG~e   81 (197)
T PF00697_consen    4 CGITRPEDARLAAELGADYLGF--IFYPKSPRYVSPDQARELVSAVPPKIVGVFVNQSPEEILEIVEELGLDVVQLHGDE   81 (197)
T ss_dssp             E---SHHHHHHHHHHTSSEEEE--E--TTCTTB--HHHHHHHHCCSSSSEEEEESSS-HHHHHHHHHHCTESEEEE-SGG
T ss_pred             CCCCcHHHHHHHHHcCCCEEee--ecCCCCCCccCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHHcCCCEEEECCCC
Confidence            4776 69999999999998644  33333 3 3578899999877754444444432100        000134444432


Q ss_pred             eecccCHHHHHHHHH----------------------HcC-CCEEEEeecCCccccCCCCHHHHHHHhh-cCCCcEEEEe
Q 021156          209 KFSDVYLDERVLDFL----------------------ASY-ADEFLVHGVDVEGKKLGIDDELVALLGK-YSPIPVTYAG  264 (316)
Q Consensus       209 ~~~~~~~~e~a~~~~----------------------~~G-a~~ilvtdi~~dG~~~G~d~eli~~l~~-~~~iPVIasG  264 (316)
                            ..+.+..+.                      ... ++.+| .|-...|+...+||++++.+.+ ..+.|++.+|
T Consensus        82 ------~~e~~~~l~~~~~vi~~~~v~~~~~~~~~~~~~~~~d~~L-lD~~~GgtG~~~dw~~~~~~~~~~~~~p~iLAG  154 (197)
T PF00697_consen   82 ------SPEYIKLLRAGLPVIKAIHVDKDIDLLDYLERYESVDYFL-LDSGSGGTGKTFDWSLLKKIVESYSPKPVILAG  154 (197)
T ss_dssp             -------HHHHHHHHTTSEEEEEEEESSCHSCCHHCHCSTT-SEEE-EESSSTSSSS---GGGGCCCHHT-GTSTEEEES
T ss_pred             ------CHHHHHHhhcCceEEEEEEeCCccchHHHHHhcccccEEe-EccCCCcCCcccCHHHhhhhhhhcccCcEEEEc
Confidence                  223333332                      111 24444 4423345667789999998876 3478999999


Q ss_pred             CCCCHHHHHHHHH-hCCCcCEEEEccchhhccCcccHHHHHHHHH
Q 021156          265 GVTTMADLEKIKV-AGIGRVDVTVGSALDIFGGNLAYKDVVAWHA  308 (316)
Q Consensus       265 GI~s~eDi~~l~~-~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~  308 (316)
                      |+.- +.+.++.+ ..  ..||=+.+++=.-.|.=+++.+.++++
T Consensus       155 Gl~p-~NV~~ai~~~~--p~gvDvsSGvE~~pG~KD~~ki~~fv~  196 (197)
T PF00697_consen  155 GLNP-ENVREAIRQVR--PYGVDVSSGVETSPGVKDPEKIKAFVE  196 (197)
T ss_dssp             S--T-TTHHHHHHHC----SEEEESGGGEEETTEE-HHHHHHHHH
T ss_pred             CCCh-HHHHHHHHhcC--ceEEEeCCccccCCCCCCHHHHHHHHh
Confidence            9976 46666666 45  888999998811114456666666654

In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.

>TIGR00126 deoC deoxyribose-phosphate aldolase

Probab=93.76  E-value=0.74  Score=41.50  Aligned_cols=117  Identities=21%  Similarity=0.205  Sum_probs=67.1

Q ss_pred             HHHHHHHHcCCCEE--EeCCeeecCCCC--CHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHH
Q 021156          145 DNSLSYIEEGATHV--IVTSYVFNNGQM--DLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVL  220 (316)
Q Consensus       145 e~~~~~l~~Gad~V--Vigt~~~~~~~~--~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~  220 (316)
                      .+++.+++.|||-|  +++-..+.++..  ..+.+.++.+..+ .     +-+|      .+.-.+...  +-.....++
T Consensus        74 ~E~~~Av~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~-g-----~~lK------vIlE~~~L~--~~ei~~a~~  139 (211)
T TIGR00126        74 YETKEAIKYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACA-G-----VLLK------VIIETGLLT--DEEIRKACE  139 (211)
T ss_pred             HHHHHHHHcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcC-C-----CeEE------EEEecCCCC--HHHHHHHHH
Confidence            56888999999963  444433333321  1234555555442 1     1111      111112111  113456678


Q ss_pred             HHHHcCCCEEEEeecCCcccc-CCCCHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhC
Q 021156          221 DFLASYADEFLVHGVDVEGKK-LGIDDELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAG  279 (316)
Q Consensus       221 ~~~~~Ga~~ilvtdi~~dG~~-~G~d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G  279 (316)
                      ...+.|++.+= |+   .|.. .|...+-++.+++..  .+||-++|||++.+++.+++++|
T Consensus       140 ia~eaGADfvK-Ts---TGf~~~gat~~dv~~m~~~v~~~v~IKaaGGirt~~~a~~~i~aG  197 (211)
T TIGR00126       140 ICIDAGADFVK-TS---TGFGAGGATVEDVRLMRNTVGDTIGVKASGGVRTAEDAIAMIEAG  197 (211)
T ss_pred             HHHHhCCCEEE-eC---CCCCCCCCCHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHh
Confidence            88899999652 22   2332 344444444443332  68999999999999999999998

Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.

>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain

Probab=93.76  E-value=0.13  Score=50.52  Aligned_cols=72  Identities=17%  Similarity=0.112  Sum_probs=50.0

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCC-----cccHHHHHHHHHhC--CCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeee
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGAD-----PLSKAAAIEALHAY--PGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVF  165 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~-----~~~~~~i~~~v~~~--~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~  165 (316)
                      ++ +-|+...+.|++.+.+-.-.+.     .+....+.++.+.+  .+||+++||||. .|+-+++..||+.|.+|+.++
T Consensus       263 ~~-~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALaLGA~~v~iGr~~l  341 (383)
T cd03332         263 HP-DDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLFDSGVRTGADIMKALALGAKAVLIGRPYA  341 (383)
T ss_pred             CH-HHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHH
Confidence            44 4666777889887555432221     12233344444444  489999999995 999999999999999999877


Q ss_pred             c
Q 021156          166 N  166 (316)
Q Consensus       166 ~  166 (316)
                      .
T Consensus       342 ~  342 (383)
T cd03332         342 Y  342 (383)
T ss_pred             H
Confidence            3

LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.

>TIGR01334 modD putative molybdenum utilization protein ModD

Probab=93.64  E-value=0.56  Score=44.08  Aligned_cols=76  Identities=14%  Similarity=0.088  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhh-cCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhh
Q 021156          215 LDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGK-YSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDI  293 (316)
Q Consensus       215 ~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~-~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~  293 (316)
                      ..+.++++.+.|++.+.++..+.+-     -.+.++.+++ ..++.+.++|||. ++.+.++.+.|  ++.+++|.-.  
T Consensus       197 tleea~ea~~~GaDiI~lDn~~~e~-----l~~~v~~l~~~~~~~~leasGGI~-~~ni~~ya~~G--vD~is~gal~--  266 (277)
T TIGR01334       197 TIEQALTVLQASPDILQLDKFTPQQ-----LHHLHERLKFFDHIPTLAAAGGIN-PENIADYIEAG--IDLFITSAPY--  266 (277)
T ss_pred             CHHHHHHHHHcCcCEEEECCCCHHH-----HHHHHHHHhccCCCEEEEEECCCC-HHHHHHHHhcC--CCEEEeCcce--
Confidence            3578889999999999877443220     1123333332 2467799999985 58899999988  8888888765  


Q ss_pred             ccCcccH
Q 021156          294 FGGNLAY  300 (316)
Q Consensus       294 ~~g~~~~  300 (316)
                      |..+.++
T Consensus       267 ~a~~~Di  273 (277)
T TIGR01334       267 YAAPCDI  273 (277)
T ss_pred             ecCccce
Confidence            6665543

The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.

>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway

Probab=93.64  E-value=1.5  Score=42.37  Aligned_cols=140  Identities=14%  Similarity=0.141  Sum_probs=89.9

Q ss_pred             HHHHHHHHcC-CCEEE--eCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHH
Q 021156          145 DNSLSYIEEG-ATHVI--VTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLD  221 (316)
Q Consensus       145 e~~~~~l~~G-ad~VV--igt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~  221 (316)
                      +.+.++++.| ...+=  +|......   +.+.++.+.+.+|+ .+.+.+|+.   +       +|...   ...++++.
T Consensus       148 ~~~~~~~~~G~f~~~KiKvg~~~~~~---d~~~v~avr~~~g~-~~~l~iDaN---~-------~~~~~---~A~~~~~~  210 (365)
T cd03318         148 AEAEEMLEAGRHRRFKLKMGARPPAD---DLAHVEAIAKALGD-RASVRVDVN---Q-------AWDES---TAIRALPR  210 (365)
T ss_pred             HHHHHHHhCCCceEEEEEeCCCChHH---HHHHHHHHHHHcCC-CcEEEEECC---C-------CCCHH---HHHHHHHH
Confidence            3466777888 76543  45422221   37889999999974 567889983   2       45432   35677778


Q ss_pred             HHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHH
Q 021156          222 FLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYK  301 (316)
Q Consensus       222 ~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~  301 (316)
                      +.+.++..+     .  .=..-.|++.++++++.+++||.+.=-+.+.+|+.++.+.+ .++.+.+--..  .+|--...
T Consensus       211 l~~~~~~~i-----E--eP~~~~~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~-~~d~~~~d~~~--~GGit~~~  280 (365)
T cd03318         211 LEAAGVELI-----E--QPVPRENLDGLARLRSRNRVPIMADESVSGPADAFELARRG-AADVFSLKIAK--SGGLRRAQ  280 (365)
T ss_pred             HHhcCccee-----e--CCCCcccHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhC-CCCeEEEeecc--cCCHHHHH
Confidence            877775422     1  11112268889999988899977665577899999999987 35656655444  45555566


Q ss_pred             HHHHHHHhhc
Q 021156          302 DVVAWHAQQE  311 (316)
Q Consensus       302 ~~~~~~~~~~  311 (316)
                      ++.++++++.
T Consensus       281 ~~~~~a~~~g  290 (365)
T cd03318         281 KVAAIAEAAG  290 (365)
T ss_pred             HHHHHHHHcC
Confidence            6666655543

This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.

>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds

Probab=93.57  E-value=1.8  Score=39.83  Aligned_cols=153  Identities=15%  Similarity=0.134  Sum_probs=88.4

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCC---------cccHHHHHHHH----HhCC-CcEEEec-----CC--CH-HHHHHHH
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGAD---------PLSKAAAIEAL----HAYP-GGLQVGG-----GI--NS-DNSLSYI  151 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~---------~~~~~~i~~~v----~~~~-~pl~vGG-----GI--r~-e~~~~~l  151 (316)
                      |+. .|+..+++|++.+.+-|--..         ....+++...+    +.++ .|++++.     +-  .. +.++++.
T Consensus        21 D~~-sA~i~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~~G~g~~~~~~~~~~~~l~   99 (240)
T cd06556          21 DYS-MAKQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLPFGAYGAPTAAFELAKTFM   99 (240)
T ss_pred             CHH-HHHHHHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCCCCCCcCHHHHHHHHHHHH
Confidence            676 788888899998777764321         12333443333    3344 6887753     22  12 4488999


Q ss_pred             HcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeec----CCeeEEEeCCcceecccCHHHHHHHHHHcCC
Q 021156          152 EEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKK----DGKYAIVTDRWQKFSDVYLDERVLDFLASYA  227 (316)
Q Consensus       152 ~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~----~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga  227 (316)
                      ++||+-|-|--....     .+.++.+.+. + =-|+.=+|..-.    .|.|++....  ...-...++.++.+++.|+
T Consensus       100 ~aGa~gv~iED~~~~-----~~~i~ai~~a-~-i~ViaRtd~~pq~~~~~gg~~~~~~~--~~~~~~ai~Ra~ay~~AGA  170 (240)
T cd06556         100 RAGAAGVKIEGGEWH-----IETLQMLTAA-A-VPVIAHTGLTPQSVNTSGGDEGQYRG--DEAGEQLIADALAYAPAGA  170 (240)
T ss_pred             HcCCcEEEEcCcHHH-----HHHHHHHHHc-C-CeEEEEeCCchhhhhccCCceeeccC--HHHHHHHHHHHHHHHHcCC
Confidence            999998877221111     3344444432 1 123333443100    0101121111  1111246788999999999


Q ss_pred             CEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeC
Q 021156          228 DEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGG  265 (316)
Q Consensus       228 ~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGG  265 (316)
                      +.+++..+         +.+.++++.+.+++|++..|.
T Consensus       171 d~i~~e~~---------~~e~~~~i~~~~~~P~~~~ga  199 (240)
T cd06556         171 DLIVMECV---------PVELAKQITEALAIPLAGIGA  199 (240)
T ss_pred             CEEEEcCC---------CHHHHHHHHHhCCCCEEEEec
Confidence            99887432         578999999999999988764

Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=93.57  E-value=0.12  Score=51.74  Aligned_cols=39  Identities=21%  Similarity=0.244  Sum_probs=34.3

Q ss_pred             HHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecC
Q 021156          129 LHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNN  167 (316)
Q Consensus       129 v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~  167 (316)
                      ++..++|++..|||+ ..|+.+++.+||+.|.+|+.+-..
T Consensus       323 ~~~~~vpviadGGi~~~~di~kAla~GA~~V~~G~~~a~~  362 (450)
T TIGR01302       323 AAQSGIPVIADGGIRYSGDIVKALAAGADAVMLGSLLAGT  362 (450)
T ss_pred             HhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEECchhhcC
Confidence            344689999999999 699999999999999999987653

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa

Probab=93.54  E-value=0.25  Score=46.25  Aligned_cols=46  Identities=20%  Similarity=0.206  Sum_probs=37.9

Q ss_pred             cHHHHHHHHHhCCCcEE--EecCCC-HHHHHHHHHcCCCEEEeCCeeec
Q 021156          121 SKAAAIEALHAYPGGLQ--VGGGIN-SDNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus       121 ~~~~i~~~v~~~~~pl~--vGGGIr-~e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      ..+.+.++.+...+|+.  .-|||. .+++..+++.||+.|++||+...
T Consensus       182 d~elLk~l~~~~~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~  230 (283)
T cd04727         182 PYELVKETAKLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK  230 (283)
T ss_pred             CHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhc
Confidence            34445555556789997  999995 79999999999999999999975

Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.

>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]

Probab=93.54  E-value=2.1  Score=41.50  Aligned_cols=134  Identities=16%  Similarity=0.217  Sum_probs=90.2

Q ss_pred             HHHHHHHHHcCCCEEEeCCe---eecCC-CCCHHHHHHHH---HHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHH
Q 021156          144 SDNSLSYIEEGATHVIVTSY---VFNNG-QMDLERLKDLV---RVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLD  216 (316)
Q Consensus       144 ~e~~~~~l~~Gad~VVigt~---~~~~~-~~~~eli~ei~---~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~  216 (316)
                      .++++.+++.|||.|-+|-.   .+... .+..+-+++.+   ..+| .++.+.+..-..++       ..     -.+.
T Consensus        16 l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~g-kk~~V~~N~~~~~~-------~~-----~~~~   82 (347)
T COG0826          16 LEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAG-KKVYVAVNTLLHND-------EL-----ETLE   82 (347)
T ss_pred             HHHHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcC-CeEEEEeccccccc-------hh-----hHHH
Confidence            58899999999999999954   11111 23334444444   4455 45666665421111       00     1256


Q ss_pred             HHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhh-cCCCcEEEE--eCCCCHHHHHHHHHhCCCcCEEEEccchhh
Q 021156          217 ERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGK-YSPIPVTYA--GGVTTMADLEKIKVAGIGRVDVTVGSALDI  293 (316)
Q Consensus       217 e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~-~~~iPVIas--GGI~s~eDi~~l~~~G~g~~gVivG~Al~~  293 (316)
                      +..+.+.+.|++.+++-|..           ++.-+++ ..++|+.+|  --+.+.+.+.-+.++|  +..+++.+-+  
T Consensus        83 ~~l~~l~e~GvDaviv~Dpg-----------~i~l~~e~~p~l~ih~S~q~~v~N~~~~~f~~~~G--~~rvVl~rEl--  147 (347)
T COG0826          83 RYLDRLVELGVDAVIVADPG-----------LIMLARERGPDLPIHVSTQANVTNAETAKFWKELG--AKRVVLPREL--  147 (347)
T ss_pred             HHHHHHHHcCCCEEEEcCHH-----------HHHHHHHhCCCCcEEEeeeEecCCHHHHHHHHHcC--CEEEEeCccC--
Confidence            78899999999999977653           4445544 356888766  5789999999999998  8888888777  


Q ss_pred             ccCcccHHHHHHHHHhh
Q 021156          294 FGGNLAYKDVVAWHAQQ  310 (316)
Q Consensus       294 ~~g~~~~~~~~~~~~~~  310 (316)
                           ++.++.+..++-
T Consensus       148 -----s~~ei~~i~~~~  159 (347)
T COG0826         148 -----SLEEIKEIKEQT  159 (347)
T ss_pred             -----CHHHHHHHHHhC
Confidence                 677777766553

>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]

Probab=93.53  E-value=4.8  Score=37.94  Aligned_cols=153  Identities=13%  Similarity=0.135  Sum_probs=97.4

Q ss_pred             HHHHhCCCcEE--EecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEe
Q 021156          127 EALHAYPGGLQ--VGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVT  204 (316)
Q Consensus       127 ~~v~~~~~pl~--vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~  204 (316)
                      ..++..++|+.  .+=|-..+++.+.++.|...|.++-..+.- +-|....+++++..-  +.-+|+-.       .+-+
T Consensus        69 ~~a~~~~vPV~lHlDHg~~~~~~~~ai~~GFsSvMiDgS~~~~-eENi~~tkevv~~ah--~~gvsVEa-------ElG~  138 (286)
T COG0191          69 ALAEKYGVPVALHLDHGASFEDCKQAIRAGFSSVMIDGSHLPF-EENIAITKEVVEFAH--AYGVSVEA-------ELGT  138 (286)
T ss_pred             HHHHHCCCCEEEECCCCCCHHHHHHHHhcCCceEEecCCcCCH-HHHHHHHHHHHHHHH--HcCCcEEE-------Eecc
Confidence            33445667654  456666799999999999999997665431 112556666665442  22244543       2223


Q ss_pred             CCccee--------ccc-CHHHHHHHHHHcCCCEEEEeecCCccccCC----CCHHHHHHHhhcCCCcEEEEeCCCC-HH
Q 021156          205 DRWQKF--------SDV-YLDERVLDFLASYADEFLVHGVDVEGKKLG----IDDELVALLGKYSPIPVTYAGGVTT-MA  270 (316)
Q Consensus       205 ~gw~~~--------~~~-~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G----~d~eli~~l~~~~~iPVIasGGI~s-~e  270 (316)
                      -|+.+.        ..+ ++.+.......-|++.+-+.-=+.-|.+.+    .|++.++++.+.+++|+..-||=+. .+
T Consensus       139 ~GG~Edg~~~~~~~~~~tdp~ea~~fv~~tgiD~LA~aiGn~HG~Yk~~~p~L~~~~L~~i~~~~~~PlVlHGgSGip~~  218 (286)
T COG0191         139 LGGEEDGVVLYTDPADLTDPEEALEFVERTGIDALAAAIGNVHGVYKPGNPKLDFDRLKEIQEAVSLPLVLHGGSGIPDE  218 (286)
T ss_pred             ccCccCCcccccchhhhCCHHHHHHHHhccCcceeeeeccccccCCCCCCCCCCHHHHHHHHHHhCCCEEEeCCCCCCHH
Confidence            333321        112 454444445555688875433244466553    4999999999999999999888654 56


Q ss_pred             HHHHHHHhCCCcCEEEEccch
Q 021156          271 DLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       271 Di~~l~~~G~g~~gVivG~Al  291 (316)
                      ++++..+.|  +..+=|.+=+
T Consensus       219 eI~~aI~~G--V~KvNi~Td~  237 (286)
T COG0191         219 EIREAIKLG--VAKVNIDTDL  237 (286)
T ss_pred             HHHHHHHhC--ceEEeeCcHH
Confidence            799999998  8888888633

>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway

Probab=93.50  E-value=0.084  Score=49.67  Aligned_cols=85  Identities=21%  Similarity=0.243  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHcCCCcceE---------EEecCCc-------------ccHHHHHHHH----HhCC--CcEEEecCCC-HH
Q 021156           95 AAEFANLYKEDGLTGGHA---------IMLGADP-------------LSKAAAIEAL----HAYP--GGLQVGGGIN-SD  145 (316)
Q Consensus        95 p~e~a~~~~~~G~~~l~l---------vDLda~~-------------~~~~~i~~~v----~~~~--~pl~vGGGIr-~e  145 (316)
                      +.+.+....+.|++++.+         +|++...             ...+...+.+    +.++  +||+..|||. .+
T Consensus       178 ~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V~~~~~~~~~~i~Iig~GGI~s~~  257 (295)
T PF01180_consen  178 PFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWVRELRKALGQDIPIIGVGGIHSGE  257 (295)
T ss_dssp             HHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHHHHHHHHTTTSSEEEEESS--SHH
T ss_pred             HHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHHHHHHHHHhccccceEEEEeCCcCCHH
Confidence            455666666778888772         3444320             1223333332    3466  9999999998 59


Q ss_pred             HHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHh
Q 021156          146 NSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVV  182 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~  182 (316)
                      |+.+++.+||+.|-++|++..+   .|..+.++.+..
T Consensus       258 da~e~l~aGA~~Vqv~Sal~~~---Gp~~~~~i~~~L  291 (295)
T PF01180_consen  258 DAIEFLMAGASAVQVCSALIYR---GPGVIRRINREL  291 (295)
T ss_dssp             HHHHHHHHTESEEEESHHHHHH---GTTHHHHHHHHH
T ss_pred             HHHHHHHhCCCHheechhhhhc---CcHHHHHHHHHH
Confidence            9999999999999999999443   288888887654

DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....

>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes

Probab=93.46  E-value=0.28  Score=45.78  Aligned_cols=68  Identities=25%  Similarity=0.281  Sum_probs=47.7

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHhC----CCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeec
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAY----PGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~----~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      .++.++.+. .++|++   ++-||.-  ....+.+.++..    ++|+.+-|||+.+.+..+.++|+|.+++|+..+.
T Consensus       189 ~t~eea~~A-~~~gaD---~I~ld~~--~~e~l~~~v~~i~~~~~i~i~asGGIt~~ni~~~a~~Gad~Isvgal~~s  260 (269)
T cd01568         189 ETLEEAEEA-LEAGAD---IIMLDNM--SPEELKEAVKLLKGLPRVLLEASGGITLENIRAYAETGVDVISTGALTHS  260 (269)
T ss_pred             CCHHHHHHH-HHcCCC---EEEECCC--CHHHHHHHHHHhccCCCeEEEEECCCCHHHHHHHHHcCCCEEEEcHHHcC
Confidence            367655444 456665   4455542  234444444433    6899999999999999999999999999876655

It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.

>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional

Probab=93.45  E-value=0.27  Score=46.28  Aligned_cols=46  Identities=22%  Similarity=0.208  Sum_probs=37.9

Q ss_pred             cHHHHHHHHHhCCCcEE--EecCCC-HHHHHHHHHcCCCEEEeCCeeec
Q 021156          121 SKAAAIEALHAYPGGLQ--VGGGIN-SDNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus       121 ~~~~i~~~v~~~~~pl~--vGGGIr-~e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      ..+.+.++.+...+|+.  .-|||. .+++..++++||+.|++||+.++
T Consensus       191 ~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~k  239 (293)
T PRK04180        191 PYELVKEVAELGRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFK  239 (293)
T ss_pred             CHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhc
Confidence            34445555556789998  999995 79999999999999999999974

>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related

Probab=93.43  E-value=0.18  Score=48.99  Aligned_cols=72  Identities=21%  Similarity=0.120  Sum_probs=46.7

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCC-----cccHHHHHHHHHhC--CCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeee
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGAD-----PLSKAAAIEALHAY--PGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVF  165 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~-----~~~~~~i~~~v~~~--~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~  165 (316)
                      +|. -|+...+.|++++.+-.-.+.     ......+.++..++  .+||++.||||. .|+-+++..||+.|-+|-.++
T Consensus       235 ~~~-da~~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLGA~~v~igr~~l  313 (356)
T PF01070_consen  235 SPE-DAKRAVDAGVDGIDVSNHGGRQLDWGPPTIDALPEIRAAVGDDIPIIADGGIRRGLDVAKALALGADAVGIGRPFL  313 (356)
T ss_dssp             SHH-HHHHHHHTT-SEEEEESGTGTSSTTS-BHHHHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT-SEEEESHHHH
T ss_pred             cHH-HHHHHHhcCCCEEEecCCCcccCccccccccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcCCCeEEEccHHH
Confidence            454 667788889886555433222     23334444444433  599999999996 999999999999999997765


Q ss_pred             c
Q 021156          166 N  166 (316)
Q Consensus       166 ~  166 (316)
                      .
T Consensus       314 ~  314 (356)
T PF01070_consen  314 Y  314 (356)
T ss_dssp             H
T ss_pred             H
Confidence            4

These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....

>PRK05437 isopentenyl pyrophosphate isomerase; Provisional

Probab=93.41  E-value=0.16  Score=49.35  Aligned_cols=72  Identities=17%  Similarity=0.127  Sum_probs=50.3

Q ss_pred             HHHHHHHHHcCCCcceEEEecCCc-----------------------ccHHHHHHHHHh-CCCcEEEecCCCH-HHHHHH
Q 021156           96 AEFANLYKEDGLTGGHAIMLGADP-----------------------LSKAAAIEALHA-YPGGLQVGGGINS-DNSLSY  150 (316)
Q Consensus        96 ~e~a~~~~~~G~~~l~lvDLda~~-----------------------~~~~~i~~~v~~-~~~pl~vGGGIr~-e~~~~~  150 (316)
                      .+.|+.+.++|++.+.+---.++.                       +....+.++.+. .++|++..|||++ .|+.++
T Consensus       200 ~~~a~~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~~~ipvia~GGI~~~~dv~k~  279 (352)
T PRK05437        200 KETAKRLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLLPDLPIIASGGIRNGLDIAKA  279 (352)
T ss_pred             HHHHHHHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHH
Confidence            478899999998865552111100                       011133333344 4799999999995 999999


Q ss_pred             HHcCCCEEEeCCeeecC
Q 021156          151 IEEGATHVIVTSYVFNN  167 (316)
Q Consensus       151 l~~Gad~VVigt~~~~~  167 (316)
                      +..||+.|-+|+.++..
T Consensus       280 l~~GAd~v~ig~~~l~~  296 (352)
T PRK05437        280 LALGADAVGMAGPFLKA  296 (352)
T ss_pred             HHcCCCEEEEhHHHHHH
Confidence            99999999999987753

>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily

Probab=93.39  E-value=6  Score=35.95  Aligned_cols=197  Identities=20%  Similarity=0.224  Sum_probs=111.1

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCC--c------ccHHHHHHHHHhCCCcEEEecCCC--HHHHHHHHHcCCCEEEeCC
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGAD--P------LSKAAAIEALHAYPGGLQVGGGIN--SDNSLSYIEEGATHVIVTS  162 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~--~------~~~~~i~~~v~~~~~pl~vGGGIr--~e~~~~~l~~Gad~VVigt  162 (316)
                      ..-.++++.+.+.|++   .+.+...  .      .....+++.+++..-++.+..=.+  .++++++.++|++.|-+..
T Consensus        19 e~~~~i~~~L~~~GV~---~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g~~~i~i~~   95 (265)
T cd03174          19 EDKLEIAEALDEAGVD---SIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAGVDEVRIFD   95 (265)
T ss_pred             HHHHHHHHHHHHcCCC---EEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCCcCEEEEEE
Confidence            3455778888877765   4444422  1      234444555543221233333333  5789999999999876644


Q ss_pred             eeec--------CC-CCCHHHHHHHH---HHhcCceEEEee-eeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCE
Q 021156          163 YVFN--------NG-QMDLERLKDLV---RVVGKQRLVLDL-SCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADE  229 (316)
Q Consensus       163 ~~~~--------~~-~~~~eli~ei~---~~~G~~~Ivvsl-D~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~  229 (316)
                      ..-+        .+ +-..+.+.+..   +..| -.+.+++ ++-           +- ....-.+.++++.+.+.|++.
T Consensus        96 ~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G-~~v~~~~~~~~-----------~~-~~~~~~l~~~~~~~~~~g~~~  162 (265)
T cd03174          96 SASETHSRKNLNKSREEDLENAEEAIEAAKEAG-LEVEGSLEDAF-----------GC-KTDPEYVLEVAKALEEAGADE  162 (265)
T ss_pred             ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCC-CeEEEEEEeec-----------CC-CCCHHHHHHHHHHHHHcCCCE
Confidence            3321        00 00123333333   2333 2233333 221           10 011124678899999999998


Q ss_pred             EEEeecCCccccCCCCH-HHHHHHhhcCC-CcEEEEe----CCCCHHHHHHHHHhCC-CcCEEEEccchhhccCcccHHH
Q 021156          230 FLVHGVDVEGKKLGIDD-ELVALLGKYSP-IPVTYAG----GVTTMADLEKIKVAGI-GRVDVTVGSALDIFGGNLAYKD  302 (316)
Q Consensus       230 ilvtdi~~dG~~~G~d~-eli~~l~~~~~-iPVIasG----GI~s~eDi~~l~~~G~-g~~gVivG~Al~~~~g~~~~~~  302 (316)
                      +.+-|.  .|.+...++ ++++.+++..+ +|+-+-+    |.....-+..+ +.|. -+++-+-|-+=  -.|+.+.++
T Consensus       163 i~l~Dt--~G~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~an~laA~-~aG~~~id~s~~G~G~--~~Gn~~~e~  237 (265)
T cd03174         163 ISLKDT--VGLATPEEVAELVKALREALPDVPLGLHTHNTLGLAVANSLAAL-EAGADRVDGSVNGLGE--RAGNAATED  237 (265)
T ss_pred             EEechh--cCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCCChHHHHHHHHH-HcCCCEEEeccccccc--cccCccHHH
Confidence            865553  576665554 47788877665 8888877    66655544444 5673 24555555554  568899999


Q ss_pred             HHHHHHhh
Q 021156          303 VVAWHAQQ  310 (316)
Q Consensus       303 ~~~~~~~~  310 (316)
                      ++.+++..
T Consensus       238 ~~~~l~~~  245 (265)
T cd03174         238 LVAALEGL  245 (265)
T ss_pred             HHHHHHhc
Confidence            98877764

The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".

>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain

Probab=93.38  E-value=3.7  Score=38.14  Aligned_cols=200  Identities=16%  Similarity=0.073  Sum_probs=105.2

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHhCCCcEEEecCCC--HHHHHHHHHcCCCEEEeCCee---ecC
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAYPGGLQVGGGIN--SDNSLSYIEEGATHVIVTSYV---FNN  167 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~~~pl~vGGGIr--~e~~~~~l~~Gad~VVigt~~---~~~  167 (316)
                      .+-+++++.+.+.|++.+-+-.= +..+......+.+.....+..+-+-.|  .++++++.++|++.|-+-...   +..
T Consensus        22 ~~k~~i~~~L~~~Gv~~IEvG~P-~~~~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i~i~~~~S~~~~~  100 (262)
T cd07948          22 EDKIEIAKALDAFGVDYIELTSP-AASPQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVETGVDGVDLVFGTSPFLRE  100 (262)
T ss_pred             HHHHHHHHHHHHcCCCEEEEECC-CCCHHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHcCcCEEEEEEecCHHHHH
Confidence            45568999999999776555431 111111122233332222122232234  589999999999987663211   000


Q ss_pred             ---CCC---CHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCcccc
Q 021156          168 ---GQM---DLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKK  241 (316)
Q Consensus       168 ---~~~---~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~  241 (316)
                         ++-   ..+.+.++.+......+.+.+..-          ..+... .-.+.++++.+.+.|++++.+-|  ..|.+
T Consensus       101 ~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e----------da~r~~-~~~l~~~~~~~~~~g~~~i~l~D--t~G~~  167 (262)
T cd07948         101 ASHGKSITEIIESAVEVIEFVKSKGIEVRFSSE----------DSFRSD-LVDLLRVYRAVDKLGVNRVGIAD--TVGIA  167 (262)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE----------eeCCCC-HHHHHHHHHHHHHcCCCEEEECC--cCCCC
Confidence               100   123333333333111122333221          111111 11367888999999999875544  55776


Q ss_pred             CCCCH-HHHHHHhhcCCCcEEEEe----CCCCHHHHHHHHHhCC-CcCEEEEccchhhccCcccHHHHHHHHHh
Q 021156          242 LGIDD-ELVALLGKYSPIPVTYAG----GVTTMADLEKIKVAGI-GRVDVTVGSALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       242 ~G~d~-eli~~l~~~~~iPVIasG----GI~s~eDi~~l~~~G~-g~~gVivG~Al~~~~g~~~~~~~~~~~~~  309 (316)
                      ...+. ++++.+++..++|+-+-+    |.....- ..+.+.|. -+++.+-|-+-  -.|+.++++++..++.
T Consensus       168 ~P~~v~~~~~~~~~~~~~~i~~H~Hn~~Gla~an~-~~a~~aG~~~vd~s~~GlGe--raGn~~~e~~~~~l~~  238 (262)
T cd07948         168 TPRQVYELVRTLRGVVSCDIEFHGHNDTGCAIANA-YAALEAGATHIDTTVLGIGE--RNGITPLGGLIARMYT  238 (262)
T ss_pred             CHHHHHHHHHHHHHhcCCeEEEEECCCCChHHHHH-HHHHHhCCCEEEEecccccc--ccCCccHHHHHHHHHh
Confidence            66654 477888877777775554    2333333 33445673 14445555444  4577888888876643

Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th

>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=93.37  E-value=0.41  Score=45.24  Aligned_cols=67  Identities=15%  Similarity=0.155  Sum_probs=48.7

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHH-----hCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeec
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALH-----AYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~-----~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      +..++ ....++|++   ++-||.  ...+.+.++++     .-.+|+.+-|||+.+.+..|...|+|.+++|+....
T Consensus       205 tleea-~eA~~~GaD---~I~LDn--~~~e~l~~av~~~~~~~~~i~leAsGGIt~~ni~~ya~tGvD~Isvgsl~~s  276 (288)
T PRK07428        205 TLEQV-QEALEYGAD---IIMLDN--MPVDLMQQAVQLIRQQNPRVKIEASGNITLETIRAVAETGVDYISSSAPITR  276 (288)
T ss_pred             CHHHH-HHHHHcCCC---EEEECC--CCHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEEEchhhhC
Confidence            45544 444467776   666663  23344545443     246899999999999999999999999999998765

>PRK09197 fructose-bisphosphate aldolase; Provisional

Probab=93.36  E-value=2.9  Score=40.54  Aligned_cols=153  Identities=12%  Similarity=0.111  Sum_probs=91.7

Q ss_pred             HhCCCc--EEEecCCC--HHHHHHHHHcC-----------CCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeee
Q 021156          130 HAYPGG--LQVGGGIN--SDNSLSYIEEG-----------ATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCR  194 (316)
Q Consensus       130 ~~~~~p--l~vGGGIr--~e~~~~~l~~G-----------ad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k  194 (316)
                      ++..+|  |-.+=|-.  .+.+++++++|           ++.|.++...+.- +=|.++.+++++...+  .-+++-.-
T Consensus        89 ~~~~VPValHLDHg~~~~~~~i~~ai~~g~~~v~~a~~~gftSVMiDgS~lpf-EeNI~~TkevVe~Ah~--~GvsVEaE  165 (350)
T PRK09197         89 EHYGVPVILHTDHCAKKLLPWIDGLLDAGEKHFAAGGKPLFSSHMIDLSEEPL-EENIEICSKYLERMAK--AGMTLEIE  165 (350)
T ss_pred             HHCCCCEEEECCCCCCcchHHHHHHHHhhHHHHHhcCCCCceeEEeeCCCCCH-HHHHHHHHHHHHHHHH--cCCEEEEE
Confidence            334444  44555555  45666666666           9999997655421 0025566665544321  11334321


Q ss_pred             ecCCeeEEEe--CC----cc-e-ecccCHHHHHHHHHHcCC----CEEEEeecCCccccC-C---CCHHHHHHHhhcC--
Q 021156          195 KKDGKYAIVT--DR----WQ-K-FSDVYLDERVLDFLASYA----DEFLVHGVDVEGKKL-G---IDDELVALLGKYS--  256 (316)
Q Consensus       195 ~~~g~~~v~~--~g----w~-~-~~~~~~~e~a~~~~~~Ga----~~ilvtdi~~dG~~~-G---~d~eli~~l~~~~--  256 (316)
                      .  |  .|.-  .+    +. + ..--++.+..+...+.|+    +.+-+--=+.-|.+. +   .|++.++++.+.+  
T Consensus       166 L--G--~Igg~Ed~~~~~~~~~~~~~TdPeeA~~Fv~~Tgv~~~~D~LAvaiGt~HG~Yk~~~p~Ld~e~L~~I~~~v~~  241 (350)
T PRK09197        166 L--G--VTGGEEDGVDNSHEDNSKLYTQPEDVLYAYEALGKISGRFTIAASFGNVHGVYKPGNVKLRPEILKDSQEYVSK  241 (350)
T ss_pred             E--e--ccCCCcCCccccccccccccCCHHHHHHHHHHhCCCCcceEEeeecccccCCcCCCCCccCHHHHHHHHHHHHH
Confidence            0  1  1110  01    11 0 011256666666667787    665433234556665 3   3999999999887  


Q ss_pred             -------CCcEEEEeCCCCH-HHHHHHHHhCCCcCEEEEccch
Q 021156          257 -------PIPVTYAGGVTTM-ADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       257 -------~iPVIasGGI~s~-eDi~~l~~~G~g~~gVivG~Al  291 (316)
                             ++|+..-||-+.+ ++++++.+.|  +..+=|++.+
T Consensus       242 ~~~~~~~~vPLVLHGgSGipde~i~~ai~~G--I~KINi~T~l  282 (350)
T PRK09197        242 KFGLPAKPFDFVFHGGSGSTLEEIREAVSYG--VVKMNIDTDT  282 (350)
T ss_pred             hhCCCCCCCCEEEeCCCCCCHHHHHHHHHCC--CeeEEeCcHH
Confidence                   8999999998877 6788899988  9999999876

>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase

Probab=93.35  E-value=5.4  Score=37.04  Aligned_cols=162  Identities=14%  Similarity=0.075  Sum_probs=101.0

Q ss_pred             HHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCee
Q 021156          122 KAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKY  200 (316)
Q Consensus       122 ~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~  200 (316)
                      ...+.+.+++.++|+..  =+. .++++.+.+. ++..-||+....|    .++++++.+ .| .-|++    +  .|. 
T Consensus        78 l~~l~~~~~~~Gl~~~t--~~~d~~~~~~l~~~-~d~lkI~s~~~~n----~~LL~~~a~-~g-kPVil----k--~G~-  141 (260)
T TIGR01361        78 LKLLRRAADEHGLPVVT--EVMDPRDVEIVAEY-ADILQIGARNMQN----FELLKEVGK-QG-KPVLL----K--RGM-  141 (260)
T ss_pred             HHHHHHHHHHhCCCEEE--eeCChhhHHHHHhh-CCEEEECcccccC----HHHHHHHhc-CC-CcEEE----e--CCC-
Confidence            33455556677777665  344 4778888888 9999999999997    999988865 33 22222    2  221 


Q ss_pred             EEEeCCcceecccCHHHHHHHHHHcCCCEEEEee--cCC-ccc-cCCCCHHHHHHHhhcCCCcEEE-EeCCCC-----HH
Q 021156          201 AIVTDRWQKFSDVYLDERVLDFLASYADEFLVHG--VDV-EGK-KLGIDDELVALLGKYSPIPVTY-AGGVTT-----MA  270 (316)
Q Consensus       201 ~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtd--i~~-dG~-~~G~d~eli~~l~~~~~iPVIa-sGGI~s-----~e  270 (316)
                             . .+--+....+..+.+.|...+++..  ++. +++ ..-.|+..+..+++..+.||++ ++....     ..
T Consensus       142 -------~-~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~~~pV~~ds~Hs~G~r~~~~~  213 (260)
T TIGR01361       142 -------G-NTIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKETHLPIIVDPSHAAGRRDLVIP  213 (260)
T ss_pred             -------C-CCHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhhCCCEEEcCCCCCCccchHHH
Confidence                   0 0111344556777788987776543  321 122 2345899999999878899999 555444     34


Q ss_pred             HHHHHHHhCCCcCEEEEcc------chhhccCcccHHHHHHHHHh
Q 021156          271 DLEKIKVAGIGRVDVTVGS------ALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       271 Di~~l~~~G~g~~gVivG~------Al~~~~g~~~~~~~~~~~~~  309 (316)
                      -.......|  ++|+++-+      ++--+...++++++.+++++
T Consensus       214 ~~~aAva~G--a~gl~iE~H~t~d~a~~D~~~sl~p~~l~~lv~~  256 (260)
T TIGR01361       214 LAKAAIAAG--ADGLMIEVHPDPEKALSDSKQQLTPEEFKRLVKE  256 (260)
T ss_pred             HHHHHHHcC--CCEEEEEeCCCccccCCcchhcCCHHHHHHHHHH
Confidence            444555566  89988764      33112234677777766654

The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.

>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase

Probab=93.34  E-value=2.5  Score=39.87  Aligned_cols=144  Identities=11%  Similarity=0.060  Sum_probs=81.2

Q ss_pred             HHHHhCCCcEEEe--cCCC---H-HHHHHHHHcCCCEEEe-CCeeecC-------C--C-CCH-HHHHHHHHHh----cC
Q 021156          127 EALHAYPGGLQVG--GGIN---S-DNSLSYIEEGATHVIV-TSYVFNN-------G--Q-MDL-ERLKDLVRVV----GK  184 (316)
Q Consensus       127 ~~v~~~~~pl~vG--GGIr---~-e~~~~~l~~Gad~VVi-gt~~~~~-------~--~-~~~-eli~ei~~~~----G~  184 (316)
                      .+...+.+|++++  +|.+   . +.++++.++|+.-+.| +...-+.       +  . +++ +.++++....    +.
T Consensus        72 ~I~~a~~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~  151 (285)
T TIGR02320        72 FMFDVTTKPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTE  151 (285)
T ss_pred             HHHhhcCCCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCC
Confidence            3334578897663  3444   2 4588999999999988 2111000       0  0 112 3444443322    11


Q ss_pred             c-eEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcC-----CC
Q 021156          185 Q-RLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYS-----PI  258 (316)
Q Consensus       185 ~-~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~-----~i  258 (316)
                      + -|++-.|.+       +...++     -+.++.++.+.+.|++.+.+...       -.+.+.++++.+.+     ++
T Consensus       152 ~~~IiARTDa~-------~~~~~~-----~eAi~Ra~ay~eAGAD~ifv~~~-------~~~~~ei~~~~~~~~~~~p~~  212 (285)
T TIGR02320       152 DFMIIARVESL-------ILGKGM-----EDALKRAEAYAEAGADGIMIHSR-------KKDPDEILEFARRFRNHYPRT  212 (285)
T ss_pred             CeEEEEecccc-------cccCCH-----HHHHHHHHHHHHcCCCEEEecCC-------CCCHHHHHHHHHHhhhhCCCC
Confidence            1 112222221       111122     24778899999999999887621       13556666665544     56


Q ss_pred             cEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          259 PVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       259 PVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      |+.+..+-...-.+.+|.++|  +..|+.|..+
T Consensus       213 pl~~~~~~~~~~~~~eL~~lG--~~~v~~~~~~  243 (285)
T TIGR02320       213 PLVIVPTSYYTTPTDEFRDAG--ISVVIYANHL  243 (285)
T ss_pred             CEEEecCCCCCCCHHHHHHcC--CCEEEEhHHH
Confidence            887755322233578888888  8889998666

A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.

>PLN02858 fructose-bisphosphate aldolase

Probab=93.31  E-value=1.9  Score=49.15  Aligned_cols=153  Identities=14%  Similarity=0.105  Sum_probs=94.5

Q ss_pred             HhCCCc--EEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEE-eCC
Q 021156          130 HAYPGG--LQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIV-TDR  206 (316)
Q Consensus       130 ~~~~~p--l~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~-~~g  206 (316)
                      ++..+|  +-.+=|-..+.+++++++|++.|.++...+.- +=|.+..+++++...+-  -+++-.-.  |  .|. ..+
T Consensus      1166 ~~~~vpV~lHLDHg~~~~~i~~ai~~Gf~SVM~DgS~l~~-eeNi~~t~~vv~~Ah~~--gv~VEaEl--G--~v~g~e~ 1238 (1378)
T PLN02858       1166 EQASVPITVHFDHGTSKHELLEALELGFDSVMVDGSHLSF-TENISYTKSISSLAHSK--GLMVEAEL--G--RLSGTED 1238 (1378)
T ss_pred             HHCCCCEEEECCCCCCHHHHHHHHHhCCCEEEEeCCCCCH-HHHHHHHHHHHHHHHHc--CCEEEEEe--c--ccCCccC
Confidence            334444  45566666789999999999999997654421 00356666666544211  13333210  1  121 011


Q ss_pred             c----c-eecccCHHHHHHHHHHcCCCEEEEeecCCccccCC----CCHHHHHHHhhcC---CCcEEEEeCCCCH-HHHH
Q 021156          207 W----Q-KFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLG----IDDELVALLGKYS---PIPVTYAGGVTTM-ADLE  273 (316)
Q Consensus       207 w----~-~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G----~d~eli~~l~~~~---~iPVIasGGI~s~-eDi~  273 (316)
                      .    . +..--++.+..+...+-|++.+-+--=+..|.+.+    .|+++++++.+.+   ++|+..-||=+.. ++++
T Consensus      1239 ~~~~~~~~~~~T~p~~a~~Fv~~TgvD~LAvaiGt~HG~Y~~~~p~l~~~~l~~i~~~~~~~~vpLVlHGgSG~~~~~~~ 1318 (1378)
T PLN02858       1239 GLTVEEYEAKLTDVDQAKEFIDETGIDALAVCIGNVHGKYPASGPNLRLDLLKELRALSSKKGVLLVLHGASGLPESLIK 1318 (1378)
T ss_pred             CccccccccCCCCHHHHHHHHHhcCCcEEeeecccccccCCCCCCccCHHHHHHHHHHhcCCCCcEEEeCCCCCCHHHHH
Confidence            1    0 00012565655666667999875433244455543    4999999999988   7999988876654 5678


Q ss_pred             HHHHhCCCcCEEEEccch
Q 021156          274 KIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       274 ~l~~~G~g~~gVivG~Al  291 (316)
                      ++.+.|  +..|=|++.+
T Consensus      1319 ~ai~~G--i~KiNi~T~~ 1334 (1378)
T PLN02858       1319 ECIENG--VRKFNVNTEV 1334 (1378)
T ss_pred             HHHHcC--CeEEEeCHHH
Confidence            888888  9999999876

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=93.27  E-value=0.27  Score=49.65  Aligned_cols=68  Identities=21%  Similarity=0.229  Sum_probs=49.5

Q ss_pred             HHHHHHHHcCCCcceEEEecCC--------------cccHHHHHHHH---HhCCCcEEEecCCC-HHHHHHHHHcCCCEE
Q 021156           97 EFANLYKEDGLTGGHAIMLGAD--------------PLSKAAAIEAL---HAYPGGLQVGGGIN-SDNSLSYIEEGATHV  158 (316)
Q Consensus        97 e~a~~~~~~G~~~l~lvDLda~--------------~~~~~~i~~~v---~~~~~pl~vGGGIr-~e~~~~~l~~Gad~V  158 (316)
                      +.++.+.++|++.+   +...+              .+....+.++.   +..++|++..|||+ ..|+.+++.+||+.|
T Consensus       278 ~~~~~l~~~G~d~i---~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~viadGgi~~~~di~kala~GA~~v  354 (475)
T TIGR01303       278 EGVRDLLEAGANII---KVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWADGGVRHPRDVALALAAGASNV  354 (475)
T ss_pred             HHHHHHHHhCCCEE---EECCcCCccccCccccCCCCchHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCCEE
Confidence            57788888888754   32211              12334444543   44689999999999 699999999999999


Q ss_pred             EeCCeeecC
Q 021156          159 IVTSYVFNN  167 (316)
Q Consensus       159 Vigt~~~~~  167 (316)
                      .+|+.+-..
T Consensus       355 m~g~~~ag~  363 (475)
T TIGR01303       355 MVGSWFAGT  363 (475)
T ss_pred             eechhhccc
Confidence            999987543

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>PRK06806 fructose-bisphosphate aldolase; Provisional

Probab=93.25  E-value=0.37  Score=45.38  Aligned_cols=75  Identities=19%  Similarity=0.140  Sum_probs=55.2

Q ss_pred             cCHHHHHHHHHHcCCCcceE--EEecCC-----cccHHHHHHHHHhCCCcEEEec--CCCHHHHHHHHHcCCCEEEeCCe
Q 021156           93 KSAAEFANLYKEDGLTGGHA--IMLGAD-----PLSKAAAIEALHAYPGGLQVGG--GINSDNSLSYIEEGATHVIVTSY  163 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~l--vDLda~-----~~~~~~i~~~v~~~~~pl~vGG--GIr~e~~~~~l~~Gad~VVigt~  163 (316)
                      .+|.+..+..++.|+|.+-+  =-.-+.     ..+.+.+.++.+.+++|+..=|  ||..+++.++.+.|+++|.+.|.
T Consensus       153 t~~eea~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~~e~~~~~i~~G~~kinv~T~  232 (281)
T PRK06806        153 TSTTEAKRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHGGSGISPEDFKKCIQHGIRKINVATA  232 (281)
T ss_pred             CCHHHHHHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHcCCcEEEEhHH
Confidence            58987666555668875555  111111     2345556566667889999999  99999999999999999999999


Q ss_pred             eecC
Q 021156          164 VFNN  167 (316)
Q Consensus       164 ~~~~  167 (316)
                      ...+
T Consensus       233 i~~a  236 (281)
T PRK06806        233 TFNS  236 (281)
T ss_pred             HHHH
Confidence            8875

>TIGR00693 thiE thiamine-phosphate pyrophosphorylase

Probab=93.23  E-value=0.44  Score=41.69  Aligned_cols=73  Identities=19%  Similarity=0.140  Sum_probs=48.7

Q ss_pred             CHHHHHHHHHHcCCCcceE--EEecCCc------ccHHHHHHHHHhC-CCcEEEecCCCHHHHHHHHHcCCCEEEeCCee
Q 021156           94 SAAEFANLYKEDGLTGGHA--IMLGADP------LSKAAAIEALHAY-PGGLQVGGGINSDNSLSYIEEGATHVIVTSYV  164 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~l--vDLda~~------~~~~~i~~~v~~~-~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~  164 (316)
                      ++.++.+ ..+.|++.+.+  +.-...+      ...+.+.+.++.. ++|+.+.|||+.+++..+++.|++.|++++..
T Consensus       105 ~~~e~~~-a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a~GGI~~~~~~~~~~~G~~gva~~~~i  183 (196)
T TIGR00693       105 NLEELAE-AEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSIDIPIVAIGGITLENAAEVLAAGADGVAVVSAI  183 (196)
T ss_pred             CHHHHHH-HhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcCCCEEEEhHHh
Confidence            5665544 44567775443  1111111      1234444444444 48999999999899999999999999999998


Q ss_pred             ecC
Q 021156          165 FNN  167 (316)
Q Consensus       165 ~~~  167 (316)
                      .+.
T Consensus       184 ~~~  186 (196)
T TIGR00693       184 MQA  186 (196)
T ss_pred             hCC
Confidence            764

This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.

>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=93.17  E-value=0.56  Score=42.30  Aligned_cols=70  Identities=23%  Similarity=0.295  Sum_probs=51.9

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHH-hCC-CcEEEecCCCHHHHHHHHHcCCCEEEeCCeeec
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALH-AYP-GGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~-~~~-~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      .+|.|+...+ ++|++.+.++-  +.... ...++.++ -.+ +|+..=|||+.+.+..|+++|++.+.+|+....
T Consensus       117 ~T~~E~~~A~-~~Gad~vklFP--a~~~G-~~~ik~l~~~~p~ip~~atGGI~~~N~~~~l~aGa~~vavgs~l~~  188 (213)
T PRK06552        117 MTVTEIVTAL-EAGSEIVKLFP--GSTLG-PSFIKAIKGPLPQVNVMVTGGVNLDNVKDWFAAGADAVGIGGELNK  188 (213)
T ss_pred             CCHHHHHHHH-HcCCCEEEECC--cccCC-HHHHHHHhhhCCCCEEEEECCCCHHHHHHHHHCCCcEEEEchHHhC
Confidence            4687777665 58898888732  22222 33444444 344 999999999999999999999999999988765

>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP)

Probab=93.17  E-value=0.27  Score=43.57  Aligned_cols=50  Identities=24%  Similarity=0.266  Sum_probs=44.1

Q ss_pred             CCCcEEEecCCCHHHHHHHHHcC-CCEEEeCCeeecC-CCCCHHHHHHHHHH
Q 021156          132 YPGGLQVGGGINSDNSLSYIEEG-ATHVIVTSYVFNN-GQMDLERLKDLVRV  181 (316)
Q Consensus       132 ~~~pl~vGGGIr~e~~~~~l~~G-ad~VVigt~~~~~-~~~~~eli~ei~~~  181 (316)
                      ...|+.+.|||+.+.+..+++.| ++.|.++|..... |.-|++.++++.+.
T Consensus       151 ~~~PvilaGGI~~~Nv~~~i~~~~~~gvdv~S~ie~~pg~kd~~ki~~~~~~  202 (203)
T cd00405         151 SRKPVILAGGLTPDNVAEAIRLVRPYGVDVSSGVETSPGIKDPEKIRAFIEA  202 (203)
T ss_pred             cCCCEEEECCCChHHHHHHHHhcCCCEEEcCCcccCCCCCcCHHHHHHHHHh
Confidence            57899999999999999999999 9999999999877 66678888888764

Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.

>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional

Probab=93.15  E-value=1.4  Score=39.77  Aligned_cols=127  Identities=17%  Similarity=0.157  Sum_probs=71.3

Q ss_pred             HHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCC
Q 021156          149 SYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYAD  228 (316)
Q Consensus       149 ~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~  228 (316)
                      .+.++|||.+.+-...  .    ++.+++..+........+.+|+.  .              ..+ .+.++...+.+..
T Consensus        75 ~~~~~Gad~vTvH~~a--~----~~~i~~~~~~~~~~g~~~~V~ll--t--------------s~~-~~~l~~~~~~~~~  131 (216)
T PRK13306         75 MAFEAGADWVTVICAA--H----IPTIKAALKVAKEFNGEIQIELY--G--------------NWT-WEQAQQWRDAGIS  131 (216)
T ss_pred             HHHHCCCCEEEEeCCC--C----HHHHHHHHHHHHHcCCEEEEEEC--C--------------CCC-HHHHHHHHcCChh
Confidence            4778999999887644  2    56556555432111125667664  1              112 2344566666766


Q ss_pred             EEEE-eecCC--cccc-CCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHH
Q 021156          229 EFLV-HGVDV--EGKK-LGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVV  304 (316)
Q Consensus       229 ~ilv-tdi~~--dG~~-~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~  304 (316)
                      .+++ ..++.  +|.. .+...+.++++++. +..+.+.|||+- +.+..+.+.+  ++-+|+||++  +.-. ++.+..
T Consensus       132 ~~vl~~a~~~~~~G~v~s~~~~~~ir~~~~~-~~~i~V~gGI~~-~~~~~~~~~~--ad~~VvGr~I--~~a~-dp~~a~  204 (216)
T PRK13306        132 QVIYHRSRDAQLAGVAWGEKDLNKVKKLSDM-GFKVSVTGGLVV-EDLKLFKGIP--VKTFIAGRAI--RGAA-DPAAAA  204 (216)
T ss_pred             hhhhhhhhhhhhcCCCCCHHHHHHHHHHhcC-CCeEEEcCCCCH-hhHHHHhcCC--CCEEEECCcc--cCCC-CHHHHH
Confidence            5443 23322  2222 11244556666542 445899999995 3333455556  8999999999  6433 344443


Q ss_pred             H
Q 021156          305 A  305 (316)
Q Consensus       305 ~  305 (316)
                      +
T Consensus       205 ~  205 (216)
T PRK13306        205 R  205 (216)
T ss_pred             H
Confidence            3

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=93.14  E-value=0.37  Score=48.92  Aligned_cols=69  Identities=17%  Similarity=0.254  Sum_probs=53.4

Q ss_pred             CHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcC-CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEc
Q 021156          214 YLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYS-PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVG  288 (316)
Q Consensus       214 ~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~-~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG  288 (316)
                      +..+.+..+.+.|++.|.+..-  +|... .-++.++++++.. ++||++ |.+.|.++++.+.++|  ++++.+|
T Consensus       241 ~~~~~~~~l~~ag~d~i~id~a--~G~s~-~~~~~i~~ik~~~~~~~v~a-G~V~t~~~a~~~~~aG--ad~I~vg  310 (495)
T PTZ00314        241 EDIERAAALIEAGVDVLVVDSS--QGNSI-YQIDMIKKLKSNYPHVDIIA-GNVVTADQAKNLIDAG--ADGLRIG  310 (495)
T ss_pred             HHHHHHHHHHHCCCCEEEEecC--CCCch-HHHHHHHHHHhhCCCceEEE-CCcCCHHHHHHHHHcC--CCEEEEC
Confidence            3478899999999998765442  33322 2378899998764 677777 8999999999999999  8989876

>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=93.12  E-value=0.41  Score=45.00  Aligned_cols=68  Identities=19%  Similarity=0.200  Sum_probs=50.5

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHH---h----CCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeec
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALH---A----YPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~---~----~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      +-++.+....++|++   ++-||.-  ..+.+.++++   .    -.+.+.+.|||+.+.+.+|.+.|+|.+++|+..+.
T Consensus       190 ~~leea~~a~~agaD---iI~LDn~--~~e~l~~~v~~l~~~~~~~~~~leaSGGI~~~ni~~yA~tGvD~Is~galt~s  264 (278)
T PRK08385        190 ESLEDALKAAKAGAD---IIMLDNM--TPEEIREVIEALKREGLRERVKIEVSGGITPENIEEYAKLDVDVISLGALTHS  264 (278)
T ss_pred             CCHHHHHHHHHcCcC---EEEECCC--CHHHHHHHHHHHHhcCcCCCEEEEEECCCCHHHHHHHHHcCCCEEEeChhhcC
Confidence            344566677788887   7778753  2334444443   2    24679999999999999999999999999998764

>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea

Probab=93.02  E-value=0.54  Score=42.51  Aligned_cols=65  Identities=22%  Similarity=0.204  Sum_probs=47.1

Q ss_pred             HHHHHHcCCCcceEEEecCCcccHHHHHHHHHhCCCcEEEecCC--CH-----HHHHHHHHcCCCEEEeCCeeecC
Q 021156           99 ANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAYPGGLQVGGGI--NS-----DNSLSYIEEGATHVIVTSYVFNN  167 (316)
Q Consensus        99 a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~~~pl~vGGGI--r~-----e~~~~~l~~Gad~VVigt~~~~~  167 (316)
                      ++...+.|++.+.+-   . ..+.+.+.++++..++|+.+-||+  ++     +.++.++++||+.|.+|+..++.
T Consensus       149 ~~~a~~~GaD~Ik~~---~-~~~~~~~~~i~~~~~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~~~  220 (235)
T cd00958         149 ARIGAELGADIVKTK---Y-TGDAESFKEVVEGCPVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQR  220 (235)
T ss_pred             HHHHHHHCCCEEEec---C-CCCHHHHHHHHhcCCCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechhhhcC
Confidence            455666788876662   1 123455666666778999886776  32     34889999999999999999876

Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.

>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed

Probab=93.01  E-value=2.1  Score=41.42  Aligned_cols=89  Identities=20%  Similarity=0.242  Sum_probs=54.6

Q ss_pred             HHHHHHHHHH--cCCCEEEEeecCCccc-cCCCC-----------HHHHHHHhhcCCCcEEE-EeCCCCHHHHHHHH---
Q 021156          215 LDERVLDFLA--SYADEFLVHGVDVEGK-KLGID-----------DELVALLGKYSPIPVTY-AGGVTTMADLEKIK---  276 (316)
Q Consensus       215 ~~e~a~~~~~--~Ga~~ilvtdi~~dG~-~~G~d-----------~eli~~l~~~~~iPVIa-sGGI~s~eDi~~l~---  276 (316)
                      +...++.+.+  +|++-+= +....+.. ..|++           .+.++++.+.+++|+++ |||+ +.+++.+.+   
T Consensus       186 V~~a~r~~~~~elGaDvlK-ve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~~P~vvlsgG~-~~~~f~~~l~~A  263 (340)
T PRK12858        186 VIKTMEEFSKPRYGVDVLK-VEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATDLPFIFLSAGV-SPELFRRTLEFA  263 (340)
T ss_pred             HHHHHHHHhhhccCCeEEE-eeCCCCcccccccccccccccHHHHHHHHHHHHhhCCCCEEEECCCC-CHHHHHHHHHHH
Confidence            5556777774  9997442 33332221 12322           15677777788999876 7777 666655444   


Q ss_pred             -HhCCCc--CEEEEccchhhccCcccH------HHHHHHHHh
Q 021156          277 -VAGIGR--VDVTVGSALDIFGGNLAY------KDVVAWHAQ  309 (316)
Q Consensus       277 -~~G~g~--~gVivG~Al~~~~g~~~~------~~~~~~~~~  309 (316)
                       +.|  +  .||++||++  +...+..      +...+|++.
T Consensus       264 ~~aG--a~f~Gvl~GRni--wq~~v~~~~~~~~~~~~~~l~~  301 (340)
T PRK12858        264 CEAG--ADFSGVLCGRAT--WQDGIEPYAAEGEEARRAWLNT  301 (340)
T ss_pred             HHcC--CCccchhhhHHH--HhhhhccccCCCHHHHHHHHHH
Confidence             345  6  999999999  6655543      334556655

>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=93.00  E-value=0.58  Score=42.23  Aligned_cols=87  Identities=22%  Similarity=0.177  Sum_probs=59.3

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHh--CCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCC-
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHA--YPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQ-  169 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~--~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~-  169 (316)
                      -+|-| +....++|++-+.+++-+...  -...++.++.  -++|+..-|||+.+++..|+++|+..++.||..++... 
T Consensus       116 ~TptE-i~~a~~~Ga~~vKlFPa~~~g--g~~~lk~l~~p~p~~~~~ptGGV~~~ni~~~l~ag~v~~vggs~L~~~~~~  192 (212)
T PRK05718        116 STPSE-LMLGMELGLRTFKFFPAEASG--GVKMLKALAGPFPDVRFCPTGGISPANYRDYLALPNVLCIGGSWMVPKDAI  192 (212)
T ss_pred             CCHHH-HHHHHHCCCCEEEEccchhcc--CHHHHHHHhccCCCCeEEEeCCCCHHHHHHHHhCCCEEEEEChHhCCcchh
Confidence            47888 555667899999997754221  2334455553  24899999999999999999999777777887765311 


Q ss_pred             --CCHHHHHHHHHHh
Q 021156          170 --MDLERLKDLVRVV  182 (316)
Q Consensus       170 --~~~eli~ei~~~~  182 (316)
                        -+.+.+++..+.+
T Consensus       193 ~~~~~~~i~~~a~~~  207 (212)
T PRK05718        193 ENGDWDRITRLAREA  207 (212)
T ss_pred             ccccHHHHHHHHHHH
Confidence              1355555555544

>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA

Probab=92.99  E-value=1.8  Score=42.95  Aligned_cols=138  Identities=20%  Similarity=0.110  Sum_probs=90.5

Q ss_pred             HHHHHHHHcCCCEEE--eCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH
Q 021156          145 DNSLSYIEEGATHVI--VTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF  222 (316)
Q Consensus       145 e~~~~~l~~Gad~VV--igt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~  222 (316)
                      ++++++.+.|...+=  +|.....    +.+.++.+.+.+|+ .+.+.+|+.          .+|...   +..++++.+
T Consensus       202 ~~a~~~~~~Gf~~~KiKvg~~~~~----d~~~v~avRe~vG~-~~~L~vDaN----------~~w~~~---~A~~~~~~L  263 (415)
T cd03324         202 RLCKEALAQGFTHFKLKVGADLED----DIRRCRLAREVIGP-DNKLMIDAN----------QRWDVP---EAIEWVKQL  263 (415)
T ss_pred             HHHHHHHHcCCCEEEEeCCCCHHH----HHHHHHHHHHhcCC-CCeEEEECC----------CCCCHH---HHHHHHHHh
Confidence            457777788887543  4542223    37889999999984 677889973          356532   366778888


Q ss_pred             HHcCCCEEEEeecCCccccCCCCHHHHHHHhhcC---CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCccc
Q 021156          223 LASYADEFLVHGVDVEGKKLGIDDELVALLGKYS---PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLA  299 (316)
Q Consensus       223 ~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~---~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~  299 (316)
                      .+.++..+       +.-....|++.++++++.+   ++||.+.=-+.+..+++++++.+ .++.+.+--.-  .+|-..
T Consensus       264 ~~~~l~~i-------EEP~~~~d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~~-a~dil~~d~~~--~GGit~  333 (415)
T cd03324         264 AEFKPWWI-------EEPTSPDDILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQAG-AIDVVQIDSCR--LGGVNE  333 (415)
T ss_pred             hccCCCEE-------ECCCCCCcHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHcC-CCCEEEeCccc--cCCHHH
Confidence            87776532       1122334788899998877   68986655678999999999987 35545444333  445445


Q ss_pred             HHHHHHHHHhh
Q 021156          300 YKDVVAWHAQQ  310 (316)
Q Consensus       300 ~~~~~~~~~~~  310 (316)
                      ..++.+++.+.
T Consensus       334 ~~kia~lA~a~  344 (415)
T cd03324         334 NLAVLLMAAKF  344 (415)
T ss_pred             HHHHHHHHHHc
Confidence            55665555553

rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.

>TIGR01334 modD putative molybdenum utilization protein ModD

Probab=92.98  E-value=0.52  Score=44.25  Aligned_cols=68  Identities=21%  Similarity=0.193  Sum_probs=50.9

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHh-----CCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeec
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHA-----YPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~-----~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      +.++-|+.+.++|++   ++-||.-  ..+.+.+.++.     -++.+.+-|||+.+.+..|...|+|.+++|+..+.
T Consensus       196 ~tleea~ea~~~GaD---iI~lDn~--~~e~l~~~v~~l~~~~~~~~leasGGI~~~ni~~ya~~GvD~is~gal~~a  268 (277)
T TIGR01334       196 DTIEQALTVLQASPD---ILQLDKF--TPQQLHHLHERLKFFDHIPTLAAAGGINPENIADYIEAGIDLFITSAPYYA  268 (277)
T ss_pred             CCHHHHHHHHHcCcC---EEEECCC--CHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHHHhcCCCEEEeCcceec
Confidence            355677777788876   6777742  34444444432     34679999999999999999999999999997655

The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=92.94  E-value=4.3  Score=40.52  Aligned_cols=156  Identities=10%  Similarity=0.086  Sum_probs=94.0

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCcc-cHHHHHHHHHhCCCcEEEecCC-CH-----HHHHHHHHcCCCEEEeCCeeec
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADPL-SKAAAIEALHAYPGGLQVGGGI-NS-----DNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~~-~~~~i~~~v~~~~~pl~vGGGI-r~-----e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      ....+|..+...|. .+.+++.|--.+ ....+.......++|+.....- ..     +.++.+.+.++|.|+|+|+-+.
T Consensus       116 taaKLA~~l~~~G~-kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~~~~DvViIDTaGr~  194 (429)
T TIGR01425       116 TCTKLAYYYQRKGF-KPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKKENFDIIIVDTSGRH  194 (429)
T ss_pred             HHHHHHHHHHHCCC-CEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence            45678888877774 678888874321 1222222334467887653332 22     3455555679999999999654


Q ss_pred             CCCCCHHHHHHHHHH---hcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHH-cCCCEEEEeecCCccccC
Q 021156          167 NGQMDLERLKDLVRV---VGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLA-SYADEFLVHGVDVEGKKL  242 (316)
Q Consensus       167 ~~~~~~eli~ei~~~---~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~-~Ga~~ilvtdi~~dG~~~  242 (316)
                      .  .+.++++++.+.   ..++.+++-+|.-  -              +.+..+.++.+.+ .+++.+++|-+|.+-. .
T Consensus       195 ~--~d~~lm~El~~i~~~~~p~e~lLVlda~--~--------------Gq~a~~~a~~F~~~~~~~g~IlTKlD~~ar-g  255 (429)
T TIGR01425       195 K--QEDSLFEEMLQVAEAIQPDNIIFVMDGS--I--------------GQAAEAQAKAFKDSVDVGSVIITKLDGHAK-G  255 (429)
T ss_pred             c--chHHHHHHHHHHhhhcCCcEEEEEeccc--c--------------ChhHHHHHHHHHhccCCcEEEEECccCCCC-c
Confidence            2  135666766654   3344555666643  1              1234667777754 5899999999886533 2


Q ss_pred             CCCHHHHHHHhhcCCCcEEEEeCCCCHHHHH
Q 021156          243 GIDDELVALLGKYSPIPVTYAGGVTTMADLE  273 (316)
Q Consensus       243 G~d~eli~~l~~~~~iPVIasGGI~s~eDi~  273 (316)
                      |.-+    .+...+++||.+-|--..++|++
T Consensus       256 G~aL----s~~~~t~~PI~fig~Ge~v~Dle  282 (429)
T TIGR01425       256 GGAL----SAVAATKSPIIFIGTGEHIDDFE  282 (429)
T ss_pred             cHHh----hhHHHHCCCeEEEcCCCChhhcC
Confidence            2212    33445678998888666666664

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional

Probab=92.92  E-value=0.68  Score=44.33  Aligned_cols=147  Identities=15%  Similarity=0.155  Sum_probs=87.0

Q ss_pred             cCHHHHHHHHH-HcCCCcceEEEecC-C-ccc--------HHHHHHHH-HhCCCcEEEecCC----CHHHHHHHHHcCC-
Q 021156           93 KSAAEFANLYK-EDGLTGGHAIMLGA-D-PLS--------KAAAIEAL-HAYPGGLQVGGGI----NSDNSLSYIEEGA-  155 (316)
Q Consensus        93 ~~p~e~a~~~~-~~G~~~l~lvDLda-~-~~~--------~~~i~~~v-~~~~~pl~vGGGI----r~e~~~~~l~~Ga-  155 (316)
                      +||.++|++-. +.|++   ++||.- . .++        -..+.+.+ ..+++|+.+.|=-    ..+-+++.++.-. 
T Consensus        75 ~~p~~~Ak~q~~~~GAd---~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g  151 (319)
T PRK04452         75 NDPAAWAKKCVEEYGAD---MITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEG  151 (319)
T ss_pred             cCHHHHHHHHHHHhCCC---EEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCC
Confidence            47888888655 45655   666662 1 221        12233444 3578999776654    2466777787544 


Q ss_pred             CEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEe-eeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCC--CEEEE
Q 021156          156 THVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLD-LSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYA--DEFLV  232 (316)
Q Consensus       156 d~VVigt~~~~~~~~~~eli~ei~~~~G~~~Ivvs-lD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga--~~ilv  232 (316)
                      .+.+|+++..+|    .+.+-.++.+||-.-+..+ .|+.                   ...++...+.+.|+  +.|++
T Consensus       152 ~~pLInSat~en----~~~i~~lA~~y~~~Vva~s~~Dln-------------------~ak~L~~~l~~~Gi~~edIvi  208 (319)
T PRK04452        152 ERCLLGSAEEDN----YKKIAAAAMAYGHAVIAWSPLDIN-------------------LAKQLNILLTELGVPRERIVM  208 (319)
T ss_pred             CCCEEEECCHHH----HHHHHHHHHHhCCeEEEEcHHHHH-------------------HHHHHHHHHHHcCCCHHHEEE
Confidence            458999999887    8888999999973322222 1211                   24466677788898  66664


Q ss_pred             eecC-CccccCCC---CHHHHHHHh----hcCCCcEEEEeC
Q 021156          233 HGVD-VEGKKLGI---DDELVALLG----KYSPIPVTYAGG  265 (316)
Q Consensus       233 tdi~-~dG~~~G~---d~eli~~l~----~~~~iPVIasGG  265 (316)
                      -... .-|+....   +++.++.++    +....|+|..=+
T Consensus       209 DP~~~~lg~g~e~~~~~~e~IR~aAl~~d~~l~~P~i~~~~  249 (319)
T PRK04452        209 DPTTGALGYGIEYSYSVMERIRLAALKGDEMLQMPMISGVG  249 (319)
T ss_pred             eCCcccccCCHHHHHHHHHHHHHHHhcCCCcCCCCeEecch
Confidence            3322 12232222   445555543    124679877666

>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II

Probab=92.91  E-value=4.6  Score=38.99  Aligned_cols=150  Identities=9%  Similarity=0.046  Sum_probs=93.6

Q ss_pred             HhCCCcE--EEecCC--CHHHHHHHHHcC-----------CCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeee
Q 021156          130 HAYPGGL--QVGGGI--NSDNSLSYIEEG-----------ATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCR  194 (316)
Q Consensus       130 ~~~~~pl--~vGGGI--r~e~~~~~l~~G-----------ad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k  194 (316)
                      ++..+|+  -.+=|-  ..+.+++++++|           ++.|.++...+.- +=|.+..+++++...+-.  +++-.-
T Consensus        82 ~~~~VPV~lHLDH~~~~~~e~i~~ai~~G~~~~~~~~~~~FsSVMiDgS~l~~-eeNi~~T~~vve~Ah~~g--i~VEaE  158 (340)
T cd00453          82 EHYGVPVILHTDHCAKKLLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESL-QENIEICSKYLERMSKIG--MTLEIE  158 (340)
T ss_pred             HHCCCCEEEEcCCCCCCCHHHHHHHHHcCCccccccCCCCceeEEecCCCCCH-HHHHHHHHHHHHHHHHcC--CEEEEE
Confidence            3445554  556665  469999999999           9999997655421 003556666665442222  333321


Q ss_pred             ecCCeeEEEeCCcceec-----------ccCHHHHHHHHHHcC----CCEEEEeecCCccccCC----CCHHHHHHHhhc
Q 021156          195 KKDGKYAIVTDRWQKFS-----------DVYLDERVLDFLASY----ADEFLVHGVDVEGKKLG----IDDELVALLGKY  255 (316)
Q Consensus       195 ~~~g~~~v~~~gw~~~~-----------~~~~~e~a~~~~~~G----a~~ilvtdi~~dG~~~G----~d~eli~~l~~~  255 (316)
                             +-.-|+.+..           --++.+..+.+.+.|    ++.+-+--=+.-|.+.+    .|+++++++.+.
T Consensus       159 -------lG~igG~ed~~~~~~~~~~~~yT~Peea~~Fv~~Tg~i~pvD~LAvsiGt~HG~Yk~g~p~L~~~~L~~i~~~  231 (340)
T cd00453         159 -------LGCTGGEEDGVDNSHMDASALYTQPEDVDYAYTELSKISPRFTIAASFGNVHGVYKKGNVVLTPTILRDSQEY  231 (340)
T ss_pred             -------EEecCCccCCcccccccccccCCCHHHHHHHHHHhCCCCcceEEeeecCccccCCCCCCCccCHHHHHHHHHH
Confidence                   1111111100           114777777777889    78664322233344432    499999999887


Q ss_pred             C---------CCcEEEEeCCCCH-HHHHHHHHhCCCcCEEEEccch
Q 021156          256 S---------PIPVTYAGGVTTM-ADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       256 ~---------~iPVIasGGI~s~-eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      +         ++|+..-||=+.. +++.++.+.|  +..+=|++.+
T Consensus       232 ~~~~~gl~~~~~pLVlHGgSG~~~e~~~~ai~~G--i~KiNi~Te~  275 (340)
T cd00453         232 VSKKHNLPHNSLNFVFHGGSGSTAQEIKDSVSYG--VVKMNIDTDT  275 (340)
T ss_pred             HHhhcccCCCCCceEEeCCCCCCHHHHHHHHHcC--CeEEEcccHH
Confidence            6         7999999988776 5567788888  8889898875

This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.

>KOG0538 consensus Glycolate oxidase [Energy production and conversion]

Probab=92.80  E-value=0.3  Score=46.25  Aligned_cols=66  Identities=23%  Similarity=0.250  Sum_probs=46.3

Q ss_pred             HHHHHHcCCCcceEEEecCC-----cccHHHHHHHHHhC--CCcEEEecCCCH-HHHHHHHHcCCCEEEeCCee
Q 021156           99 ANLYKEDGLTGGHAIMLGAD-----PLSKAAAIEALHAY--PGGLQVGGGINS-DNSLSYIEEGATHVIVTSYV  164 (316)
Q Consensus        99 a~~~~~~G~~~l~lvDLda~-----~~~~~~i~~~v~~~--~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~  164 (316)
                      |+.-.++|+.++.+=.=.|-     ......+-++++++  .+|+.++||+|. .|+.+++..||..|.+|--.
T Consensus       237 A~~Ave~G~~GIIVSNHGgRQlD~vpAtI~~L~Evv~aV~~ri~V~lDGGVR~G~DVlKALALGAk~VfiGRP~  310 (363)
T KOG0538|consen  237 ARKAVEAGVAGIIVSNHGGRQLDYVPATIEALPEVVKAVEGRIPVFLDGGVRRGTDVLKALALGAKGVFIGRPI  310 (363)
T ss_pred             HHHHHHhCCceEEEeCCCccccCcccchHHHHHHHHHHhcCceEEEEecCcccchHHHHHHhcccceEEecCch
Confidence            33344678887766553322     23344455556554  489999999997 99999999999999998643

>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]

Probab=92.79  E-value=1.6  Score=40.41  Aligned_cols=148  Identities=14%  Similarity=0.047  Sum_probs=83.6

Q ss_pred             HHHHHHHcCCCEEEeCCeeecC--CCCCHHHHHHHHHH--hcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHH
Q 021156          146 NSLSYIEEGATHVIVTSYVFNN--GQMDLERLKDLVRV--VGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLD  221 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~~~~~--~~~~~eli~ei~~~--~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~  221 (316)
                      ..+.+.++|++.|+||=.-++.  ++.+...-.++...  .| =..++++.-..     .-+-.|-.  ..+-.......
T Consensus        80 S~~mL~d~G~~~viiGHSERR~~~~E~d~~i~~K~~aa~~~G-l~pIlCvGEtl-----~~reag~t--~~v~~~Ql~~~  151 (251)
T COG0149          80 SAEMLKDLGAKYVLIGHSERRLYFGETDELIAKKVKAAKEAG-LTPILCVGETL-----EEREAGKT--LEVLKRQLAAA  151 (251)
T ss_pred             CHHHHHHcCCCEEEECccccccccccchHHHHHHHHHHHHCC-CeEEEEcCCCH-----HHHhccCh--HHHHHHHHHHH
Confidence            4778889999999999665443  23322222333322  33 23556653210     00001100  00111112333


Q ss_pred             HHHcCC---CEEEEeecCCccccCCCCH---H----HHHHHhhc-----CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEE
Q 021156          222 FLASYA---DEFLVHGVDVEGKKLGIDD---E----LVALLGKY-----SPIPVTYAGGVTTMADLEKIKVAGIGRVDVT  286 (316)
Q Consensus       222 ~~~~Ga---~~ilvtdi~~dG~~~G~d~---e----li~~l~~~-----~~iPVIasGGI~s~eDi~~l~~~G~g~~gVi  286 (316)
                      +..++.   .-|-|-.+..-||......   +    .++.....     ..+||+++|+|..-++.+.+...+  ++|+.
T Consensus       152 l~~l~~~~~~vIAYEPvWAIGTG~~at~~~a~~v~~~Ir~~~~~~~~~~~~v~IlYGGSV~~~N~~e~~~~~~--idG~L  229 (251)
T COG0149         152 LAALSPEANIVIAYEPVWAIGTGKSASPADAEEVHAFIRAVLAELFGAEEKVRILYGGSVKPGNAAELAAQPD--IDGAL  229 (251)
T ss_pred             HhhcCcccCeEEEECCHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCcChhHHHHHhcCCC--CCeEE
Confidence            444444   2334677888888766533   2    23333322     379999999999999888888887  99999


Q ss_pred             EccchhhccCcccHHHHHHH
Q 021156          287 VGSALDIFGGNLAYKDVVAW  306 (316)
Q Consensus       287 vG~Al~~~~g~~~~~~~~~~  306 (316)
                      ||+|-  .+-. +|.++++.
T Consensus       230 VGgAs--lka~-~f~~ii~~  246 (251)
T COG0149         230 VGGAS--LKAD-DFLAILEA  246 (251)
T ss_pred             Eccee--ecch-hHHHHHHH
Confidence            99999  6532 34444443

>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist

Probab=92.77  E-value=0.41  Score=45.04  Aligned_cols=74  Identities=19%  Similarity=0.101  Sum_probs=53.9

Q ss_pred             cCHHHHHHHHHHcCCCcceE-------EEecCCcccHHHHHHHHHhCCCcEEEec--CCCHHHHHHHHHcCCCEEEeCCe
Q 021156           93 KSAAEFANLYKEDGLTGGHA-------IMLGADPLSKAAAIEALHAYPGGLQVGG--GINSDNSLSYIEEGATHVIVTSY  163 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~l-------vDLda~~~~~~~i~~~v~~~~~pl~vGG--GIr~e~~~~~l~~Gad~VVigt~  163 (316)
                      .+|.+..+..++.|++.+-+       ++-.....+.+.+.++.+.+++|+-.=|  ||..+++.++.++|+++|-++|.
T Consensus       153 t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~iPlv~hGgSGi~~e~i~~~i~~Gi~kiNv~T~  232 (282)
T TIGR01859       153 ADPDEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTNIPLVLHGASGIPEEQIKKAIKLGIAKINIDTD  232 (282)
T ss_pred             CCHHHHHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHcCCCEEEECcH
Confidence            48987666665578875432       1211112355556666667889998888  99999999999999999999998


Q ss_pred             eec
Q 021156          164 VFN  166 (316)
Q Consensus       164 ~~~  166 (316)
                      ...
T Consensus       233 l~~  235 (282)
T TIGR01859       233 CRI  235 (282)
T ss_pred             HHH
Confidence            765

This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.

>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases

Probab=92.75  E-value=2.2  Score=41.40  Aligned_cols=137  Identities=16%  Similarity=0.160  Sum_probs=88.4

Q ss_pred             HHHHHHH-cCCCEE--EeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH
Q 021156          146 NSLSYIE-EGATHV--IVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF  222 (316)
Q Consensus       146 ~~~~~l~-~Gad~V--Vigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~  222 (316)
                      +++.+++ .|...+  =+|.....+   +.+.++.+.+.+|+ .+.+.+|+.          .+|...   +..++++.+
T Consensus       148 ~~~~~~~~~Gf~~~KiKvg~~~~~~---d~~~v~~~re~~g~-~~~l~~DaN----------~~~~~~---~A~~~~~~l  210 (368)
T TIGR02534       148 EAEERIEEKRHRSFKLKIGARDPAD---DVAHVVAIAKALGD-RASVRVDVN----------AAWDER---TALHYLPQL  210 (368)
T ss_pred             HHHHHHHhcCcceEEEEeCCCCcHH---HHHHHHHHHHhcCC-CcEEEEECC----------CCCCHH---HHHHHHHHH
Confidence            4555554 687654  345433222   38899999999974 567888873          246432   356777788


Q ss_pred             HHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHH
Q 021156          223 LASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKD  302 (316)
Q Consensus       223 ~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~  302 (316)
                      .+.++..+       +.=..-.|++.++++++.+++||.+.=-+.+..|+.++.+.+ +++.+.+--..  .+|-....+
T Consensus       211 ~~~~~~~i-------EeP~~~~d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~-~~d~~~~d~~~--~GGi~~~~~  280 (368)
T TIGR02534       211 ADAGVELI-------EQPTPAENREALARLTRRFNVPIMADESVTGPADALAIAKAS-AADVFALKTTK--SGGLLESKK  280 (368)
T ss_pred             HhcChhhe-------ECCCCcccHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhC-CCCEEEEcccc--cCCHHHHHH
Confidence            77665421       111122368888899888899998877788999999999887 46766665444  455444445


Q ss_pred             HHHHHHh
Q 021156          303 VVAWHAQ  309 (316)
Q Consensus       303 ~~~~~~~  309 (316)
                      +.+++.+
T Consensus       281 i~~lA~~  287 (368)
T TIGR02534       281 IAAIAEA  287 (368)
T ss_pred             HHHHHHH
Confidence            5555444

This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).

>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD

Probab=92.69  E-value=0.56  Score=46.56  Aligned_cols=61  Identities=20%  Similarity=0.256  Sum_probs=43.5

Q ss_pred             CCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCC-CHHHHHHHHHHhcCce--EEEeeee
Q 021156          133 PGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQM-DLERLKDLVRVVGKQR--LVLDLSC  193 (316)
Q Consensus       133 ~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~-~~eli~ei~~~~G~~~--IvvslD~  193 (316)
                      ++||...|||- .+++..+|..||+.|.+||.++-..|. ..+..++....-+.+.  ...+.|.
T Consensus       219 ~ipViAAGGI~tg~~vaAA~alGAd~V~~GT~flat~Ea~~s~~~K~~L~~a~~~DT~~tp~~dm  283 (418)
T cd04742         219 PIRVGAAGGIGTPEAAAAAFALGADFIVTGSINQCTVEAGTSDAVKDLLQKAGVQDTAYAPAADM  283 (418)
T ss_pred             CceEEEECCCCCHHHHHHHHHcCCcEEeeccHHHhCccccCCHHHHHHHHhCCCCCeEEeccccc
Confidence            59999999997 499999999999999999998865322 2345666654443333  3334554

NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=92.62  E-value=0.69  Score=43.53  Aligned_cols=65  Identities=15%  Similarity=0.124  Sum_probs=48.9

Q ss_pred             HHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHh--CCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeec
Q 021156           97 EFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHA--YPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        97 e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~--~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      +-+....++|++   ++-||.-  ..+.+.++++.  -..|+.+.|||+.+.+..|.+.|+|.+++|+..+.
T Consensus       205 eea~ea~~~gaD---iI~LDn~--s~e~l~~av~~~~~~~~leaSGGI~~~ni~~yA~tGVD~Is~Galths  271 (281)
T PRK06106        205 DQLEEALELGVD---AVLLDNM--TPDTLREAVAIVAGRAITEASGRITPETAPAIAASGVDLISVGWLTHS  271 (281)
T ss_pred             HHHHHHHHcCCC---EEEeCCC--CHHHHHHHHHHhCCCceEEEECCCCHHHHHHHHhcCCCEEEeChhhcC
Confidence            345555567765   6777742  34556666653  34689999999999999999999999999998764

>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated

Probab=92.57  E-value=10  Score=36.51  Aligned_cols=194  Identities=16%  Similarity=0.044  Sum_probs=114.9

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecC--------Cc--ccHHHHHHHH-HhC-CCcEEE--ecCC-CHHHHHHHHHcCCCE
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGA--------DP--LSKAAAIEAL-HAY-PGGLQV--GGGI-NSDNSLSYIEEGATH  157 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda--------~~--~~~~~i~~~v-~~~-~~pl~v--GGGI-r~e~~~~~l~~Gad~  157 (316)
                      .+-.++++.+.++|++.+-+-..++        ..  ....+.++.+ ... +.++.+  -=|+ +.++++.+.+.|++.
T Consensus        25 ~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~~gvd~  104 (337)
T PRK08195         25 EQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVKQAKIAALLLPGIGTVDDLKMAYDAGVRV  104 (337)
T ss_pred             HHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCCCCEEEEEeccCcccHHHHHHHHHcCCCE
Confidence            4566899999999998887765442        11  1233444444 332 233332  1245 468999999999999


Q ss_pred             EEeCCeeecCCCCCHHHHHHHHH---HhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEee
Q 021156          158 VIVTSYVFNNGQMDLERLKDLVR---VVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHG  234 (316)
Q Consensus       158 VVigt~~~~~~~~~~eli~ei~~---~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtd  234 (316)
                      |-+.+..-+     .+.+.+..+   +.|- .+.+.+-.          ...+   +.-.+.+.++.+.+.|++.|.+.|
T Consensus       105 iri~~~~~e-----~~~~~~~i~~ak~~G~-~v~~~l~~----------a~~~---~~e~l~~~a~~~~~~Ga~~i~i~D  165 (337)
T PRK08195        105 VRVATHCTE-----ADVSEQHIGLARELGM-DTVGFLMM----------SHMA---PPEKLAEQAKLMESYGAQCVYVVD  165 (337)
T ss_pred             EEEEEecch-----HHHHHHHHHHHHHCCC-eEEEEEEe----------ccCC---CHHHHHHHHHHHHhCCCCEEEeCC
Confidence            877653322     333443333   3342 22222211          1111   112467888999999999875554


Q ss_pred             cCCccccCCCCH-HHHHHHhhcC--CCcEEEEeC----CCCHHHHHHHHHhCC-CcCEEEEccchhhccCcccHHHHHHH
Q 021156          235 VDVEGKKLGIDD-ELVALLGKYS--PIPVTYAGG----VTTMADLEKIKVAGI-GRVDVTVGSALDIFGGNLAYKDVVAW  306 (316)
Q Consensus       235 i~~dG~~~G~d~-eli~~l~~~~--~iPVIasGG----I~s~eDi~~l~~~G~-g~~gVivG~Al~~~~g~~~~~~~~~~  306 (316)
                        .-|.+...+. ++++.+++..  ++|+-+-+.    ....+- ..+.+.|. -+++.+-|-+-  -.|+.+.++++.+
T Consensus       166 --T~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANs-laAi~aGa~~iD~Sl~GlG~--~aGN~~tE~lv~~  240 (337)
T PRK08195        166 --SAGALLPEDVRDRVRALRAALKPDTQVGFHGHNNLGLGVANS-LAAVEAGATRIDGSLAGLGA--GAGNTPLEVLVAV  240 (337)
T ss_pred             --CCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCcchHHHHH-HHHHHhCCCEEEecChhhcc--cccCccHHHHHHH
Confidence              5577776654 4778887765  678766654    333333 33445673 25566666555  5688999998887


Q ss_pred             HHhh
Q 021156          307 HAQQ  310 (316)
Q Consensus       307 ~~~~  310 (316)
                      ++..
T Consensus       241 L~~~  244 (337)
T PRK08195        241 LDRM  244 (337)
T ss_pred             HHhc
Confidence            7653

>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=92.48  E-value=0.76  Score=43.43  Aligned_cols=67  Identities=16%  Similarity=0.089  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHh--CCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeec
Q 021156           95 AAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHA--YPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        95 p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~--~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      -+|.++...++|++   ++-||.-  ..+.+.++++.  -.+.+.+-|||+.+.+..|...|+|.+++|+..+.
T Consensus       206 tleea~~a~~agaD---iImLDnm--spe~l~~av~~~~~~~~leaSGGI~~~ni~~yA~tGVD~Is~galths  274 (290)
T PRK06559        206 SLAAAEEAAAAGAD---IIMLDNM--SLEQIEQAITLIAGRSRIECSGNIDMTTISRFRGLAIDYVSSGSLTHS  274 (290)
T ss_pred             CHHHHHHHHHcCCC---EEEECCC--CHHHHHHHHHHhcCceEEEEECCCCHHHHHHHHhcCCCEEEeCccccC
Confidence            33566667777876   7777742  34555555542  25789999999999999999999999999998774

>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=92.41  E-value=0.61  Score=43.84  Aligned_cols=67  Identities=12%  Similarity=0.006  Sum_probs=49.7

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHhC--CCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeec
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAY--PGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~--~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      +.. .++...+.|++.+-+   |.  ...+.+.++++..  ++|+.+-|||+.+.+..+.++|+|.|.+|+..+.
T Consensus       197 tle-ea~~A~~~gaDyI~l---D~--~~~e~l~~~~~~~~~~i~i~AiGGIt~~ni~~~a~~Gvd~IAvg~l~~s  265 (277)
T PRK08072        197 TEE-QVREAVAAGADIIMF---DN--RTPDEIREFVKLVPSAIVTEASGGITLENLPAYGGTGVDYISLGFLTHS  265 (277)
T ss_pred             CHH-HHHHHHHcCCCEEEE---CC--CCHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHcCCCEEEEChhhcC
Confidence            454 455566788886644   42  3345566666543  4788899999999999999999999999998764

>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes

Probab=92.39  E-value=0.66  Score=43.34  Aligned_cols=67  Identities=25%  Similarity=0.242  Sum_probs=49.4

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHhC--CCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeec
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAY--PGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~--~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      +.. -++...++|++   ++-||.-  ..+.+.++++..  ++|+.+-|||+.+.+..+.++|+|.+.+|+..+.
T Consensus       191 s~e-ea~~A~~~gaD---yI~ld~~--~~e~l~~~~~~~~~~ipi~AiGGI~~~ni~~~a~~Gvd~Iav~sl~~~  259 (268)
T cd01572         191 TLE-QLKEALEAGAD---IIMLDNM--SPEELREAVALLKGRVLLEASGGITLENIRAYAETGVDYISVGALTHS  259 (268)
T ss_pred             CHH-HHHHHHHcCCC---EEEECCc--CHHHHHHHHHHcCCCCcEEEECCCCHHHHHHHHHcCCCEEEEEeeecC
Confidence            454 45555567776   4445532  345566666544  5899999999999999999999999999998774

It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.

>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []

Probab=92.37  E-value=1.8  Score=42.32  Aligned_cols=71  Identities=23%  Similarity=0.265  Sum_probs=41.7

Q ss_pred             HHHHHHHcCCCEEEEeecCCcccc---------CCCCHH-HHHHHhhc-------CCCcEEEEeCCCCHHHHHHHHHhCC
Q 021156          218 RVLDFLASYADEFLVHGVDVEGKK---------LGIDDE-LVALLGKY-------SPIPVTYAGGVTTMADLEKIKVAGI  280 (316)
Q Consensus       218 ~a~~~~~~Ga~~ilvtdi~~dG~~---------~G~d~e-li~~l~~~-------~~iPVIasGGI~s~eDi~~l~~~G~  280 (316)
                      .+....+.|+|.|.+-. ..-||.         .|..++ .+.++.+.       -.+.++++||+++..|+.+++.+| 
T Consensus       219 ~~~~~~~ag~D~ItIDG-~~GGTGAap~~~~d~~GlP~~~~l~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kalaLG-  296 (368)
T PF01645_consen  219 IAAGAAKAGADFITIDG-AEGGTGAAPLTSMDHVGLPTEYALARAHQALVKNGLRDRVSLIASGGLRTGDDVAKALALG-  296 (368)
T ss_dssp             HHHHHHHTT-SEEEEE--TT---SSEECCHHHHC---HHHHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHHHHCT-
T ss_pred             HHHhhhhccCCEEEEeC-CCCCCCCCchhHHhhCCCcHHHHHHHHHHHHHHcCCCCceEEEEeCCccCHHHHHHHHhcC-
Confidence            34448889999876533 333443         233443 23232211       247899999999999999999999 


Q ss_pred             CcCEEEEccch
Q 021156          281 GRVDVTVGSAL  291 (316)
Q Consensus       281 g~~gVivG~Al  291 (316)
                       +++|-+|+++
T Consensus       297 -AD~v~igt~~  306 (368)
T PF01645_consen  297 -ADAVYIGTAA  306 (368)
T ss_dssp             --SEEE-SHHH
T ss_pred             -CCeeEecchh
Confidence             8999999976

This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.

>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]

Probab=92.27  E-value=1.3  Score=39.63  Aligned_cols=141  Identities=22%  Similarity=0.276  Sum_probs=85.2

Q ss_pred             HHHHHHHHHh-----CCCcEEEecCCC------HHH-HHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEE-
Q 021156          122 KAAAIEALHA-----YPGGLQVGGGIN------SDN-SLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLV-  188 (316)
Q Consensus       122 ~~~i~~~v~~-----~~~pl~vGGGIr------~e~-~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~Iv-  188 (316)
                      .+.+++.++.     +.+|++.=|=-+      .|. ++.+-++||.-.+|=-.       .||....+.++..++.|- 
T Consensus        79 l~~i~emvk~ar~~gvt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDl-------PpEEa~~~Rne~~k~gisl  151 (268)
T KOG4175|consen   79 LNSIIEMVKEARPQGVTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDL-------PPEEAETLRNEARKHGISL  151 (268)
T ss_pred             HHHHHHHHHHhcccCcccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccC-------ChHHHHHHHHHHHhcCceE
Confidence            4455565542     568998887654      122 66777899986555322       255555555544222221 


Q ss_pred             EeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEE--eecCCccccCCCCH---HHHHHHhhcC-CCcEEE
Q 021156          189 LDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLV--HGVDVEGKKLGIDD---ELVALLGKYS-PIPVTY  262 (316)
Q Consensus       189 vslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilv--tdi~~dG~~~G~d~---eli~~l~~~~-~iPVIa  262 (316)
                      +.+-.-                +  .+.+..+.+. .-++.++|  ..+-..|+..-.|.   +++.++++.. +.|+-+
T Consensus       152 vpLvaP----------------s--TtdeRmell~-~~adsFiYvVSrmG~TG~~~svn~~l~~L~qrvrk~t~dtPlAV  212 (268)
T KOG4175|consen  152 VPLVAP----------------S--TTDERMELLV-EAADSFIYVVSRMGVTGTRESVNEKLQSLLQRVRKATGDTPLAV  212 (268)
T ss_pred             EEeeCC----------------C--ChHHHHHHHH-HhhcceEEEEEeccccccHHHHHHHHHHHHHHHHHhcCCCceeE
Confidence            111110                0  1223333333 33555553  33444555444543   3788888876 899999


Q ss_pred             EeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          263 AGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       263 sGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      +-||++.||+..+-..   +|||+||+++
T Consensus       213 GFGvst~EHf~qVgsv---aDGVvvGSki  238 (268)
T KOG4175|consen  213 GFGVSTPEHFKQVGSV---ADGVVVGSKI  238 (268)
T ss_pred             eeccCCHHHHHhhhhh---ccceEecHHH
Confidence            9999999999999886   5999999987

>PRK02714 O-succinylbenzoate synthase; Provisional

Probab=92.22  E-value=3.1  Score=39.71  Aligned_cols=136  Identities=10%  Similarity=0.046  Sum_probs=87.1

Q ss_pred             HHHHHHHHcCCCE--EEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH
Q 021156          145 DNSLSYIEEGATH--VIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF  222 (316)
Q Consensus       145 e~~~~~l~~Gad~--VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~  222 (316)
                      ++++++.+.|...  +=+|......   +.+.++.+.+.+| ..+.+.+|..          .+|...   +...+++.+
T Consensus       124 ~~a~~~~~~G~~~~KvKvG~~~~~~---d~~~v~air~~~g-~~~~l~vDaN----------~~w~~~---~A~~~~~~l  186 (320)
T PRK02714        124 QQWQTLWQQGYRTFKWKIGVDPLEQ---ELKIFEQLLERLP-AGAKLRLDAN----------GGLSLE---EAKRWLQLC  186 (320)
T ss_pred             HHHHHHHHcCCCEEEEEECCCChHH---HHHHHHHHHHhcC-CCCEEEEECC----------CCCCHH---HHHHHHHHH
Confidence            5688888889874  4466532221   2788999999997 4567889973          356432   244555666


Q ss_pred             HH---cCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCccc
Q 021156          223 LA---SYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLA  299 (316)
Q Consensus       223 ~~---~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~  299 (316)
                      .+   .++..+     .  .=...-|++.++++++.+++||.+.=-+.+..|+.++.+.+  +..++.-+..  ..|-  
T Consensus       187 ~~l~~~~i~~i-----E--qP~~~~~~~~~~~l~~~~~~Pia~DEs~~~~~d~~~~~~~~--a~d~v~ik~~--k~GG--  253 (320)
T PRK02714        187 DRRLSGKIEFI-----E--QPLPPDQFDEMLQLSQDYQTPIALDESVANLAQLQQCYQQG--WRGIFVIKPA--IAGS--  253 (320)
T ss_pred             hhccCCCccEE-----E--CCCCcccHHHHHHHHHhCCCCEEECCccCCHHHHHHHHHcC--CCCEEEEcch--hcCC--
Confidence            55   233221     1  11122278888999988899998877788999999999987  4555554544  3333  


Q ss_pred             HHHHHHHHHhh
Q 021156          300 YKDVVAWHAQQ  310 (316)
Q Consensus       300 ~~~~~~~~~~~  310 (316)
                      +.++.++++++
T Consensus       254 i~~~~~~a~~~  264 (320)
T PRK02714        254 PSRLRQFCQQH  264 (320)
T ss_pred             HHHHHHHHHHh
Confidence            34566665553

>TIGR01182 eda Entner-Doudoroff aldolase

Probab=92.21  E-value=0.93  Score=40.69  Aligned_cols=86  Identities=19%  Similarity=0.168  Sum_probs=58.4

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHh--CCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCC--
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHA--YPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQ--  169 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~--~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~--  169 (316)
                      .|-|+...+ ++|++.++++-=+..  .-...++.++.  -++|+..-|||+.+++..|+++|+..+.+||..++...  
T Consensus       110 TptEi~~A~-~~Ga~~vKlFPA~~~--GG~~yikal~~plp~i~~~ptGGV~~~N~~~~l~aGa~~vg~Gs~L~~~~~~~  186 (204)
T TIGR01182       110 TPSEIMLAL-ELGITALKLFPAEVS--GGVKMLKALAGPFPQVRFCPTGGINLANVRDYLAAPNVACGGGSWLVPKDLIA  186 (204)
T ss_pred             CHHHHHHHH-HCCCCEEEECCchhc--CCHHHHHHHhccCCCCcEEecCCCCHHHHHHHHhCCCEEEEEChhhcCchhhc
Confidence            566776655 467777776653311  11234455554  35899999999999999999999999999999986311  


Q ss_pred             -CCHHHHHHHHHHh
Q 021156          170 -MDLERLKDLVRVV  182 (316)
Q Consensus       170 -~~~eli~ei~~~~  182 (316)
                       -+.+.+++..+.+
T Consensus       187 ~~~~~~i~~~a~~~  200 (204)
T TIGR01182       187 AGDWDEITRLAREA  200 (204)
T ss_pred             cccHHHHHHHHHHH
Confidence             1355555555444

2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida

>PRK14017 galactonate dehydratase; Provisional

Probab=92.17  E-value=2.8  Score=40.95  Aligned_cols=143  Identities=15%  Similarity=0.157  Sum_probs=91.0

Q ss_pred             HHHHHHHHcCCCEEEe--CCee-----ecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHH
Q 021156          145 DNSLSYIEEGATHVIV--TSYV-----FNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDE  217 (316)
Q Consensus       145 e~~~~~l~~Gad~VVi--gt~~-----~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e  217 (316)
                      ++++++.+.|...+=+  |.-.     ..+..-+.+.++.+.+.+|+ .+.+.+|+.          .+|...   +..+
T Consensus       130 ~~a~~~~~~Gf~~~KiKv~~~~~~~~~~~~~~~d~~~i~avr~~~g~-~~~l~vDaN----------~~w~~~---~A~~  195 (382)
T PRK14017        130 EAARARVERGFTAVKMNGTEELQYIDSPRKVDAAVARVAAVREAVGP-EIGIGVDFH----------GRVHKP---MAKV  195 (382)
T ss_pred             HHHHHHHHcCCCEEEEcCcCCccccccHHHHHHHHHHHHHHHHHhCC-CCeEEEECC----------CCCCHH---HHHH
Confidence            4567777889776544  2100     00001137889999999985 567889983          346432   3556


Q ss_pred             HHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCc
Q 021156          218 RVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGN  297 (316)
Q Consensus       218 ~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~  297 (316)
                      +++.+.+.++..+     .  .=..-.|++.++++++.+++||.+.=-+.+..|+.++.+.+ .++.+.+--..  .+|-
T Consensus       196 ~~~~l~~~~~~~i-----E--eP~~~~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~-a~d~v~~d~~~--~GGi  265 (382)
T PRK14017        196 LAKELEPYRPMFI-----E--EPVLPENAEALPEIAAQTSIPIATGERLFSRWDFKRVLEAG-GVDIIQPDLSH--AGGI  265 (382)
T ss_pred             HHHhhcccCCCeE-----E--CCCCcCCHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcC-CCCeEecCccc--cCCH
Confidence            6677766665532     1  11122378889999999999988777788999999999987 35555555444  5565


Q ss_pred             ccHHHHHHHHHhhc
Q 021156          298 LAYKDVVAWHAQQE  311 (316)
Q Consensus       298 ~~~~~~~~~~~~~~  311 (316)
                      ....++.+++.+..
T Consensus       266 t~~~~ia~~A~~~g  279 (382)
T PRK14017        266 TECRKIAAMAEAYD  279 (382)
T ss_pred             HHHHHHHHHHHHcC
Confidence            55666666666543

>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase

Probab=92.16  E-value=0.58  Score=43.64  Aligned_cols=66  Identities=27%  Similarity=0.248  Sum_probs=48.2

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHhC--CCcEEEecCCCHHHHHHHHHcCCCEEEeCCeee
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAY--PGGLQVGGGINSDNSLSYIEEGATHVIVTSYVF  165 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~--~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~  165 (316)
                      +.. -++...+.|++   ++-||.-  ....+.++++..  .+|+.+-|||+.+.+..+.++|+|.+.+|+...
T Consensus       187 t~e-ea~~A~~~gaD---yI~ld~~--~~e~lk~~v~~~~~~ipi~AsGGI~~~ni~~~a~~Gvd~Isvgait~  254 (265)
T TIGR00078       187 SLE-EAEEAAEAGAD---IIMLDNM--KPEEIKEAVQLLKGRVLLEASGGITLDNLEEYAETGVDVISSGALTH  254 (265)
T ss_pred             CHH-HHHHHHHcCCC---EEEECCC--CHHHHHHHHHHhcCCCcEEEECCCCHHHHHHHHHcCCCEEEeCHHHc
Confidence            454 45556678887   5555542  335555655543  389999999999999999999999999976655

Synonym: quinolinate phosphoribosyltransferase (decarboxylating)

>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain

Probab=92.15  E-value=0.37  Score=47.47  Aligned_cols=73  Identities=16%  Similarity=0.050  Sum_probs=49.9

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCc-------------cc---HHHHHHHHHh----CCCcEEEecCCCH-HHHHHHHH
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADP-------------LS---KAAAIEALHA----YPGGLQVGGGINS-DNSLSYIE  152 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~-------------~~---~~~i~~~v~~----~~~pl~vGGGIr~-e~~~~~l~  152 (316)
                      ++.++++.....|++.+.+---+++.             +.   ...+.+.+..    ..+||+..|||++ .|+.+++.
T Consensus       226 ~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~~i~viasGGI~~g~Dv~kala  305 (392)
T cd02808         226 GEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKALA  305 (392)
T ss_pred             CHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHHHcCCCCCCeEEEECCCCCHHHHHHHHH
Confidence            67788888877777755543333221             00   1112222222    2589999999995 99999999


Q ss_pred             cCCCEEEeCCeeec
Q 021156          153 EGATHVIVTSYVFN  166 (316)
Q Consensus       153 ~Gad~VVigt~~~~  166 (316)
                      .|||.|-+|+.++.
T Consensus       306 LGAd~V~ig~~~l~  319 (392)
T cd02808         306 LGADAVGIGTAALI  319 (392)
T ss_pred             cCCCeeeechHHHH
Confidence            99999999998765

GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.

>TIGR00959 ffh signal recognition particle protein

Probab=92.13  E-value=5.2  Score=39.94  Aligned_cols=155  Identities=14%  Similarity=0.067  Sum_probs=89.9

Q ss_pred             HHHHHHHHH-HcCCCcceEEEecCCcc-cHHHHHHHHHhCCCcEEEecCC-CHHH-----HHHHHHcCCCEEEeCCeeec
Q 021156           95 AAEFANLYK-EDGLTGGHAIMLGADPL-SKAAAIEALHAYPGGLQVGGGI-NSDN-----SLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        95 p~e~a~~~~-~~G~~~l~lvDLda~~~-~~~~i~~~v~~~~~pl~vGGGI-r~e~-----~~~~l~~Gad~VVigt~~~~  166 (316)
                      ...+|..+. +.| ..+.++|.|--.+ ....+.......++|+...+.- ...+     ++.+...+.|.|+++|.-+.
T Consensus       116 aakLA~~l~~~~g-~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~~~~~DvVIIDTaGr~  194 (428)
T TIGR00959       116 CGKLAYYLKKKQG-KKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAKENGFDVVIVDTAGRL  194 (428)
T ss_pred             HHHHHHHHHHhCC-CeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence            456777765 345 4678888884321 2233334445577888775542 2322     23344678999999999754


Q ss_pred             CCCCCHHHHHHHHHH---hcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHH-HcCCCEEEEeecCCccccC
Q 021156          167 NGQMDLERLKDLVRV---VGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFL-ASYADEFLVHGVDVEGKKL  242 (316)
Q Consensus       167 ~~~~~~eli~ei~~~---~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~-~~Ga~~ilvtdi~~dG~~~  242 (316)
                      .  .+..++.++.+.   ..++.+++-+|..                ++.+..+.++.+. ..++..+++|-+|.+-. .
T Consensus       195 ~--~d~~l~~eL~~i~~~~~p~e~lLVvda~----------------tgq~~~~~a~~f~~~v~i~giIlTKlD~~~~-~  255 (428)
T TIGR00959       195 Q--IDEELMEELAAIKEILNPDEILLVVDAM----------------TGQDAVNTAKTFNERLGLTGVVLTKLDGDAR-G  255 (428)
T ss_pred             c--cCHHHHHHHHHHHHhhCCceEEEEEecc----------------chHHHHHHHHHHHhhCCCCEEEEeCccCccc-c
Confidence            1  135666666443   2233344444432                1235677788776 46899999998765422 2


Q ss_pred             CCCHHHHHHHhhcCCCcEEEEeCCCCHHHHH
Q 021156          243 GIDDELVALLGKYSPIPVTYAGGVTTMADLE  273 (316)
Q Consensus       243 G~d~eli~~l~~~~~iPVIasGGI~s~eDi~  273 (316)
                      |.    +..+...+++||.+-|-=...+|+.
T Consensus       256 G~----~lsi~~~~~~PI~fi~~Ge~i~dl~  282 (428)
T TIGR00959       256 GA----ALSVRSVTGKPIKFIGVGEKIDDLE  282 (428)
T ss_pred             cH----HHHHHHHHCcCEEEEeCCCChhhCc
Confidence            22    3455556678987766434455543

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2

Probab=92.12  E-value=3.5  Score=39.60  Aligned_cols=154  Identities=17%  Similarity=0.102  Sum_probs=94.3

Q ss_pred             CCcEEEec-CCC-H----HHHHHHHHcCCCEEEe--CCeee---cCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeE
Q 021156          133 PGGLQVGG-GIN-S----DNSLSYIEEGATHVIV--TSYVF---NNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYA  201 (316)
Q Consensus       133 ~~pl~vGG-GIr-~----e~~~~~l~~Gad~VVi--gt~~~---~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~  201 (316)
                      .+|+...+ +.. .    ++++++.+.|...+=+  |....   .+.+.+.+.++.+.+.+|+ .+-+.+|+.       
T Consensus       108 ~i~~y~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~~~~~~~d~~~v~avr~~~g~-~~~l~vDan-------  179 (341)
T cd03327         108 KIPAYASGLYPTDLDELPDEAKEYLKEGYRGMKMRFGYGPSDGHAGLRKNVELVRAIREAVGY-DVDLMLDCY-------  179 (341)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCcchHHHHHHHHHHHHHHHHhCC-CCcEEEECC-------
Confidence            35665443 343 2    4567778889875543  32100   0001137889999999984 566888873       


Q ss_pred             EEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCC
Q 021156          202 IVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIG  281 (316)
Q Consensus       202 v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g  281 (316)
                         .+|...   +...+++.+.+.++..+       +.=..-.|++.++++++.+++||.+.=-+.+..++.++.+.+ .
T Consensus       180 ---~~~~~~---~A~~~~~~l~~~~~~~i-------EeP~~~~d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~-a  245 (341)
T cd03327         180 ---MSWNLN---YAIKMARALEKYELRWI-------EEPLIPDDIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGR-A  245 (341)
T ss_pred             ---CCCCHH---HHHHHHHHhhhcCCccc-------cCCCCccCHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcC-C
Confidence               245432   35566677777665422       112233478899999999999977665678999999999987 3


Q ss_pred             cCEEEEccchhhccCcccHHHHHHHHHhh
Q 021156          282 RVDVTVGSALDIFGGNLAYKDVVAWHAQQ  310 (316)
Q Consensus       282 ~~gVivG~Al~~~~g~~~~~~~~~~~~~~  310 (316)
                      ++.+.+--.-  .+|-....++.+++.+.
T Consensus       246 ~d~i~~d~~~--~GGit~~~~i~~~A~~~  272 (341)
T cd03327         246 VDILQPDVNW--VGGITELKKIAALAEAY  272 (341)
T ss_pred             CCEEecCccc--cCCHHHHHHHHHHHHHc
Confidence            5555554444  44544455565555554

Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.

>PRK11858 aksA trans-homoaconitate synthase; Reviewed

Probab=92.08  E-value=13  Score=36.43  Aligned_cols=199  Identities=19%  Similarity=0.088  Sum_probs=104.2

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHhCCCcEEEecCCC--HHHHHHHHHcCCCEEEeCCeeec---C
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAYPGGLQVGGGIN--SDNSLSYIEEGATHVIVTSYVFN---N  167 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~~~pl~vGGGIr--~e~~~~~l~~Gad~VVigt~~~~---~  167 (316)
                      .+-+++++.+.+.|++.+-+-.-... ....+.++.+.+...+..+-+=.|  .++++.++++|++.|-+-...-+   .
T Consensus        26 e~k~~ia~~L~~~GV~~IE~G~p~~~-~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i~i~~~~Sd~h~~  104 (378)
T PRK11858         26 EEKLAIARMLDEIGVDQIEAGFPAVS-EDEKEAIKAIAKLGLNASILALNRAVKSDIDASIDCGVDAVHIFIATSDIHIK  104 (378)
T ss_pred             HHHHHHHHHHHHhCCCEEEEeCCCcC-hHHHHHHHHHHhcCCCeEEEEEcccCHHHHHHHHhCCcCEEEEEEcCCHHHHH
Confidence            45668999999999775544211111 112133344433233233332234  58899999999998665322111   0


Q ss_pred             ---CCC---CHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCcccc
Q 021156          168 ---GQM---DLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKK  241 (316)
Q Consensus       168 ---~~~---~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~  241 (316)
                         ++.   ..+.+.+..+..-.....+.+.+-  +        .... ..-.+.++++.+.+.|+++|.+-|  ..|.+
T Consensus       105 ~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~e--d--------~~r~-~~~~l~~~~~~~~~~Ga~~I~l~D--T~G~~  171 (378)
T PRK11858        105 HKLKKTREEVLERMVEAVEYAKDHGLYVSFSAE--D--------ASRT-DLDFLIEFAKAAEEAGADRVRFCD--TVGIL  171 (378)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEec--c--------CCCC-CHHHHHHHHHHHHhCCCCEEEEec--cCCCC
Confidence               000   013333333322111112222221  1        1111 112467888999999999876554  44776


Q ss_pred             CCCCH-HHHHHHhhcCCCcEEEEeC----CCCHHHHHHHHHhCC-CcCEEEEccchhhccCcccHHHHHHHHH
Q 021156          242 LGIDD-ELVALLGKYSPIPVTYAGG----VTTMADLEKIKVAGI-GRVDVTVGSALDIFGGNLAYKDVVAWHA  308 (316)
Q Consensus       242 ~G~d~-eli~~l~~~~~iPVIasGG----I~s~eDi~~l~~~G~-g~~gVivG~Al~~~~g~~~~~~~~~~~~  308 (316)
                      ..... ++++.+++..++|+-+-+.    .....-+ .+.+.|. -+++-+-|-+=  -.|+..+++++..++
T Consensus       172 ~P~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~AN~l-aAv~aGa~~vd~tv~GlGe--raGNa~lE~vv~~L~  241 (378)
T PRK11858        172 DPFTMYELVKELVEAVDIPIEVHCHNDFGMATANAL-AGIEAGAKQVHTTVNGLGE--RAGNAALEEVVMALK  241 (378)
T ss_pred             CHHHHHHHHHHHHHhcCCeEEEEecCCcCHHHHHHH-HHHHcCCCEEEEeeccccc--cccCccHHHHHHHHH
Confidence            65544 4777887776788766553    3333333 3345663 24444545433  347788888877665

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=92.07  E-value=7.7  Score=36.18  Aligned_cols=157  Identities=14%  Similarity=0.059  Sum_probs=90.3

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCc-ccHHHHHHHHHhCCCcEEEecCC-CH-----HHHHHHHHcCCCEEEeCCeeec
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADP-LSKAAAIEALHAYPGGLQVGGGI-NS-----DNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~-~~~~~i~~~v~~~~~pl~vGGGI-r~-----e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      ....+|..+.+.| ..+.++|.|--. .....+....+..++|+...+.- ..     +.++.+...++|.|+|+|.-+.
T Consensus        88 t~akLA~~l~~~g-~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~~~~D~ViIDT~G~~  166 (272)
T TIGR00064        88 TIAKLANKLKKQG-KSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNIDVVLIDTAGRL  166 (272)
T ss_pred             HHHHHHHHHHhcC-CEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            4567888887776 578889988432 12334444455566776543322 22     2234455688999999998754


Q ss_pred             CCCCCHHHHHHHHHHh---c------CceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHH-HcCCCEEEEeecC
Q 021156          167 NGQMDLERLKDLVRVV---G------KQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFL-ASYADEFLVHGVD  236 (316)
Q Consensus       167 ~~~~~~eli~ei~~~~---G------~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~-~~Ga~~ilvtdi~  236 (316)
                      .  .+..++.++.+..   .      ++.+++-+|..             .   +.+..+.+..+. ..+...+++|-+|
T Consensus       167 ~--~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~-------------~---~~~~~~~~~~f~~~~~~~g~IlTKlD  228 (272)
T TIGR00064       167 Q--NKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDAT-------------T---GQNALEQAKVFNEAVGLTGIILTKLD  228 (272)
T ss_pred             c--chHHHHHHHHHHHHHHhcccCCCCceEEEEEECC-------------C---CHHHHHHHHHHHhhCCCCEEEEEccC
Confidence            2  1355555554422   1      23344444432             1   112345556655 4789999999987


Q ss_pred             CccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHH
Q 021156          237 VEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEK  274 (316)
Q Consensus       237 ~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~  274 (316)
                      .+.+ .|.-++...    ..++|+.+-|-=..++|+..
T Consensus       229 e~~~-~G~~l~~~~----~~~~Pi~~~~~Gq~~~dl~~  261 (272)
T TIGR00064       229 GTAK-GGIILSIAY----ELKLPIKFIGVGEKIDDLAP  261 (272)
T ss_pred             CCCC-ccHHHHHHH----HHCcCEEEEeCCCChHhCcc
Confidence            6533 344444333    34689877775455777754

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B

Probab=92.04  E-value=1.2  Score=40.85  Aligned_cols=175  Identities=16%  Similarity=0.116  Sum_probs=99.9

Q ss_pred             CHHHHHHHHHHcCCCcceEEEec-----C----CcccHHH----HHHHHHhCCCcEEEec----C--C-CH-HHHHHHHH
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLG-----A----DPLSKAA----AIEALHAYPGGLQVGG----G--I-NS-DNSLSYIE  152 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLd-----a----~~~~~~~----i~~~v~~~~~pl~vGG----G--I-r~-e~~~~~l~  152 (316)
                      |+. -|+..+++|++.++.--..     |    ......+    +.++++.+++|+++++    |  . +. +.++++.+
T Consensus        18 D~~-SAr~~e~~Gf~ai~~sg~~~a~s~G~pD~~~lt~~e~~~~~~~I~~~~~iPv~vD~d~GyG~~~~~v~~tv~~~~~   96 (238)
T PF13714_consen   18 DAL-SARLAERAGFDAIATSGAGVAASLGYPDGGLLTLTEMLAAVRRIARAVSIPVIVDADTGYGNDPENVARTVRELER   96 (238)
T ss_dssp             SHH-HHHHHHHTT-SEEEEHHHHHHHHTTS-SSS-S-HHHHHHHHHHHHHHSSSEEEEE-TTTSSSSHHHHHHHHHHHHH
T ss_pred             CHH-HHHHHHHcCCCEEEechHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhhcCcEEEEcccccCchhHHHHHHHHHHHH
Confidence            676 7788888888754432111     0    0112333    3344456889999963    2  2 23 66999999


Q ss_pred             cCCCEEEeCCee--ecCCC-CCH-HHHHHHHHH---hcCce--EEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHH
Q 021156          153 EGATHVIVTSYV--FNNGQ-MDL-ERLKDLVRV---VGKQR--LVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFL  223 (316)
Q Consensus       153 ~Gad~VVigt~~--~~~~~-~~~-eli~ei~~~---~G~~~--IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~  223 (316)
                      +|+.-+.|--..  ..+++ +++ +++.++...   -....  |+.-.|...           .....--+.++.++.+.
T Consensus        97 aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~-----------~~~~~~deaI~R~~aY~  165 (238)
T PF13714_consen   97 AGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAVDARRDPDFVIIARTDAFL-----------RAEEGLDEAIERAKAYA  165 (238)
T ss_dssp             CT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHC-----------HHHHHHHHHHHHHHHHH
T ss_pred             cCCcEEEeeccccCCCCCceeCHHHHHHHHHHHHHhccCCeEEEEEeccccc-----------cCCCCHHHHHHHHHHHH
Confidence            999999884431  11111 122 333343322   21111  222222210           00111124678899999


Q ss_pred             HcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          224 ASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       224 ~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      +.|++.+.++.+.        +.+.++++.+.++.|+.+.-+ ...-++.+|.++|  +..|+.|..+
T Consensus       166 eAGAD~ifi~~~~--------~~~~i~~~~~~~~~Pl~v~~~-~~~~~~~eL~~lG--v~~v~~~~~~  222 (238)
T PF13714_consen  166 EAGADMIFIPGLQ--------SEEEIERIVKAVDGPLNVNPG-PGTLSAEELAELG--VKRVSYGNSL  222 (238)
T ss_dssp             HTT-SEEEETTSS--------SHHHHHHHHHHHSSEEEEETT-SSSS-HHHHHHTT--ESEEEETSHH
T ss_pred             HcCCCEEEeCCCC--------CHHHHHHHHHhcCCCEEEEcC-CCCCCHHHHHHCC--CcEEEEcHHH
Confidence            9999998877763        345688888777899887775 3337889999999  8989999877

...

>PLN02979 glycolate oxidase

Probab=92.04  E-value=0.43  Score=46.49  Aligned_cols=70  Identities=20%  Similarity=0.186  Sum_probs=48.5

Q ss_pred             HHHHHHHHcCCCcceEEEecCCc-----ccHHHHHHHHHhC--CCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeeec
Q 021156           97 EFANLYKEDGLTGGHAIMLGADP-----LSKAAAIEALHAY--PGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        97 e~a~~~~~~G~~~l~lvDLda~~-----~~~~~i~~~v~~~--~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      +-|+...+.|++++.+-.-.+..     .....+.++.+.+  .+||+++||||. .|+-+++..||+.|-+|..++.
T Consensus       235 ~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi~dGGIr~G~Di~KALALGAdaV~iGrp~L~  312 (366)
T PLN02979        235 EDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVF  312 (366)
T ss_pred             HHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHH
Confidence            46777778898866443332221     1122333333433  489999999995 9999999999999999987763

>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway

Probab=92.01  E-value=2.4  Score=40.89  Aligned_cols=143  Identities=15%  Similarity=0.129  Sum_probs=87.6

Q ss_pred             HHHHHHHHcCCCE--EEeCCeee-----cCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHH
Q 021156          145 DNSLSYIEEGATH--VIVTSYVF-----NNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDE  217 (316)
Q Consensus       145 e~~~~~l~~Gad~--VVigt~~~-----~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e  217 (316)
                      ++++++.+.|...  +=+|...-     .+.+-+.+.++.+.+.+|+ .+.+.+|+.          .+|...   ...+
T Consensus       129 ~~~~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~D~~~i~avr~~~g~-~~~l~vDaN----------~~~~~~---~A~~  194 (352)
T cd03325         129 EAARARREAGFTAVKMNATEELQWIDTSKKVDAAVERVAALREAVGP-DIDIGVDFH----------GRVSKP---MAKD  194 (352)
T ss_pred             HHHHHHHHcCCCEEEecCCCCcccCCCHHHHHHHHHHHHHHHHhhCC-CCEEEEECC----------CCCCHH---HHHH
Confidence            3456667788774  43453100     0001137889999999974 567889973          245421   2455


Q ss_pred             HHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCc
Q 021156          218 RVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGN  297 (316)
Q Consensus       218 ~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~  297 (316)
                      +++.+.+.++..+     .  .=+.-.|++.++++++.+++||.+.=-+.+.+++.++.+.+ .++.+.+--..  .+|-
T Consensus       195 ~~~~l~~~~i~~i-----E--eP~~~~d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~-~~d~v~~d~~~--~GGi  264 (352)
T cd03325         195 LAKELEPYRLLFI-----E--EPVLPENVEALAEIAARTTIPIATGERLFSRWDFKELLEDG-AVDIIQPDISH--AGGI  264 (352)
T ss_pred             HHHhccccCCcEE-----E--CCCCccCHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhC-CCCEEecCccc--cCCH
Confidence            6666666554432     1  11222378899999998999966655577999999999887 35555554444  4555


Q ss_pred             ccHHHHHHHHHhhc
Q 021156          298 LAYKDVVAWHAQQE  311 (316)
Q Consensus       298 ~~~~~~~~~~~~~~  311 (316)
                      -...++.+++.++.
T Consensus       265 t~~~~~~~lA~~~g  278 (352)
T cd03325         265 TELKKIAAMAEAYD  278 (352)
T ss_pred             HHHHHHHHHHHHcC
Confidence            55556666665544

D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.

>TIGR02660 nifV_homocitr homocitrate synthase NifV

Probab=91.97  E-value=13  Score=36.20  Aligned_cols=198  Identities=20%  Similarity=0.127  Sum_probs=104.0

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHhCCCcEEEecCCC--HHHHHHHHHcCCCEEEeCCeeec---C
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAYPGGLQVGGGIN--SDNSLSYIEEGATHVIVTSYVFN---N  167 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~~~pl~vGGGIr--~e~~~~~l~~Gad~VVigt~~~~---~  167 (316)
                      .+-+++++.+.+.|++.+-+-.-...+ ...+.++.+.+...+..+-+=.|  .++++.++++|++.|-+-...-+   .
T Consensus        23 ~~k~~ia~~L~~~Gv~~IEvG~p~~~~-~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i~i~~~~Sd~~~~  101 (365)
T TIGR02660        23 AEKLAIARALDEAGVDELEVGIPAMGE-EERAVIRAIVALGLPARLMAWCRARDADIEAAARCGVDAVHISIPVSDLQIE  101 (365)
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCCCCH-HHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcCCcCEEEEEEccCHHHHH
Confidence            455689999999997755553211111 12233344433222223333334  58999999999997655322110   0


Q ss_pred             ---CCC---CHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCcccc
Q 021156          168 ---GQM---DLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKK  241 (316)
Q Consensus       168 ---~~~---~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~  241 (316)
                         ++.   ..+.+.+.++..-.....+.+.+-  +        .... ..-.+.++++.+.+.|++.|.+-  |..|.+
T Consensus       102 ~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~e--d--------~~r~-~~~~l~~~~~~~~~~Ga~~i~l~--DT~G~~  168 (365)
T TIGR02660       102 AKLRKDRAWVLERLARLVSFARDRGLFVSVGGE--D--------ASRA-DPDFLVELAEVAAEAGADRFRFA--DTVGIL  168 (365)
T ss_pred             HHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeec--C--------CCCC-CHHHHHHHHHHHHHcCcCEEEEc--ccCCCC
Confidence               000   012222333222111112233221  1        1111 11246778888999999987544  455766


Q ss_pred             CCCCH-HHHHHHhhcCCCcEEEEeC----CCCHHHHHHHHHhCC-CcCEEEEccchhhccCcccHHHHHHHH
Q 021156          242 LGIDD-ELVALLGKYSPIPVTYAGG----VTTMADLEKIKVAGI-GRVDVTVGSALDIFGGNLAYKDVVAWH  307 (316)
Q Consensus       242 ~G~d~-eli~~l~~~~~iPVIasGG----I~s~eDi~~l~~~G~-g~~gVivG~Al~~~~g~~~~~~~~~~~  307 (316)
                      ..... ++++.+++..++|+-+-+.    ....+-+ .+.+.|+ -+++.+-|-+=  -.|+.++++++..+
T Consensus       169 ~P~~v~~lv~~l~~~~~v~l~~H~HNd~GlA~ANal-aA~~aGa~~vd~tl~GiGe--raGN~~lE~lv~~L  237 (365)
T TIGR02660       169 DPFSTYELVRALRQAVDLPLEMHAHNDLGMATANTL-AAVRAGATHVNTTVNGLGE--RAGNAALEEVAMAL  237 (365)
T ss_pred             CHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHH-HHHHhCCCEEEEEeecccc--ccccCCHHHHHHHH
Confidence            65543 4788887777778766553    3333333 3345673 24555665554  45788899888776

This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.

>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF

Probab=91.93  E-value=2.3  Score=38.03  Aligned_cols=108  Identities=20%  Similarity=0.253  Sum_probs=62.6

Q ss_pred             HHHHHHHHHcCCCEEEeCCeeecCC-CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH
Q 021156          144 SDNSLSYIEEGATHVIVTSYVFNNG-QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF  222 (316)
Q Consensus       144 ~e~~~~~l~~Gad~VVigt~~~~~~-~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~  222 (316)
                      .+++..+.+.||||+=+-+.....| ...+.+++.+.+... -.+.+.|=.|  .|. .+++.    ..-....+.++.+
T Consensus        10 ~~~a~~A~~~GAdRiELc~~l~~GGlTPS~g~i~~~~~~~~-ipv~vMIRpr--~gd-F~Ys~----~E~~~M~~dI~~~   81 (201)
T PF03932_consen   10 LEDALAAEAGGADRIELCSNLEVGGLTPSLGLIRQAREAVD-IPVHVMIRPR--GGD-FVYSD----EEIEIMKEDIRML   81 (201)
T ss_dssp             HHHHHHHHHTT-SEEEEEBTGGGT-B---HHHHHHHHHHTT-SEEEEE--SS--SS--S---H----HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCEEEECCCccCCCcCcCHHHHHHHHhhcC-CceEEEECCC--CCC-ccCCH----HHHHHHHHHHHHH
Confidence            5889999999999998766444433 224678888887653 3455555433  332 22211    0001255678889


Q ss_pred             HHcCCCEEEEeecCCccccCCCCHHHHHHHhhc-CCCcEEE
Q 021156          223 LASYADEFLVHGVDVEGKKLGIDDELVALLGKY-SPIPVTY  262 (316)
Q Consensus       223 ~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~-~~iPVIa  262 (316)
                      .+.|++.+++--.+.||+   .|.+.++++.+. -+.|++.
T Consensus        82 ~~~GadG~VfG~L~~dg~---iD~~~~~~Li~~a~~~~~tF  119 (201)
T PF03932_consen   82 RELGADGFVFGALTEDGE---IDEEALEELIEAAGGMPVTF  119 (201)
T ss_dssp             HHTT-SEEEE--BETTSS---B-HHHHHHHHHHHTTSEEEE
T ss_pred             HHcCCCeeEEEeECCCCC---cCHHHHHHHHHhcCCCeEEE
Confidence            999999999877788876   688888877653 3555554

A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.

>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain

Probab=91.89  E-value=11  Score=35.11  Aligned_cols=196  Identities=11%  Similarity=0.018  Sum_probs=110.9

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCCcc---------cHHHHHHHHHhC--CCcEEE--ecCC-CHHHHHHHHHcCCCEE
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGADPL---------SKAAAIEALHAY--PGGLQV--GGGI-NSDNSLSYIEEGATHV  158 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~~~---------~~~~i~~~v~~~--~~pl~v--GGGI-r~e~~~~~l~~Gad~V  158 (316)
                      ..-.++++.+.++|++.+-+=.....+.         ..+.+.++.+..  +.++.+  -.+. ..++++.+.+.|++.|
T Consensus        20 ~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~gv~~i   99 (266)
T cd07944          20 EFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGNDDIDLLEPASGSVVDMI   99 (266)
T ss_pred             HHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCCCHHHHHHHhcCCcCEE
Confidence            4566788888888877665554433211         234444444322  333322  2222 2478999999999987


Q ss_pred             EeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCc
Q 021156          159 IVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVE  238 (316)
Q Consensus       159 Vigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~d  238 (316)
                      -+.... ++    .+.+.+..+........+.+..-        ...++.   .-.+.++++.+.+.|++.|.+-|  .-
T Consensus       100 ri~~~~-~~----~~~~~~~i~~ak~~G~~v~~~~~--------~a~~~~---~~~~~~~~~~~~~~g~~~i~l~D--T~  161 (266)
T cd07944         100 RVAFHK-HE----FDEALPLIKAIKEKGYEVFFNLM--------AISGYS---DEELLELLELVNEIKPDVFYIVD--SF  161 (266)
T ss_pred             EEeccc-cc----HHHHHHHHHHHHHCCCeEEEEEE--------eecCCC---HHHHHHHHHHHHhCCCCEEEEec--CC
Confidence            776533 22    55555555543211122222221        112222   12467889999999999875544  55


Q ss_pred             cccCCCCH-HHHHHHhhcCC--CcEEEEeC----CCCHHHHHHHHHhCC-CcCEEEEccchhhccCcccHHHHHHHHHh
Q 021156          239 GKKLGIDD-ELVALLGKYSP--IPVTYAGG----VTTMADLEKIKVAGI-GRVDVTVGSALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       239 G~~~G~d~-eli~~l~~~~~--iPVIasGG----I~s~eDi~~l~~~G~-g~~gVivG~Al~~~~g~~~~~~~~~~~~~  309 (316)
                      |.+...+. ++++.+++..+  +|+-+-+.    .....- ....+.|. -+++-+-|-+=  -.|+.+.++++..++.
T Consensus       162 G~~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn~~Gla~AN~-laA~~aGa~~vd~s~~G~G~--~aGN~~~E~~v~~l~~  237 (266)
T cd07944         162 GSMYPEDIKRIISLLRSNLDKDIKLGFHAHNNLQLALANT-LEAIELGVEIIDATVYGMGR--GAGNLPTELLLDYLNN  237 (266)
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCceEEEEeCCCccHHHHHH-HHHHHcCCCEEEEecccCCC--CcCcHHHHHHHHHHHH
Confidence            77776654 47778877665  78766554    222322 33345663 24555555444  4578888888776654

This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t

>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=91.85  E-value=1  Score=42.66  Aligned_cols=67  Identities=18%  Similarity=0.224  Sum_probs=50.8

Q ss_pred             HHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHh--CCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecC
Q 021156           96 AEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHA--YPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNN  167 (316)
Q Consensus        96 ~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~--~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~  167 (316)
                      ++-++...++|++   ++-||.-  ..+.+.++++.  -.+.+.+.|||+.+.+..|...|+|.+++|+..+.-
T Consensus       215 leea~eA~~aGaD---iImLDnm--spe~l~~av~~~~~~~~lEaSGGIt~~ni~~yA~tGVD~IS~galthsa  283 (294)
T PRK06978        215 LAQLETALAHGAQ---SVLLDNF--TLDMMREAVRVTAGRAVLEVSGGVNFDTVRAFAETGVDRISIGALTKDV  283 (294)
T ss_pred             HHHHHHHHHcCCC---EEEECCC--CHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHhcCCCEEEeCccccCC
Confidence            3466666678876   7777752  34555555543  246799999999999999999999999999987763

>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1

Probab=91.84  E-value=3.2  Score=40.79  Aligned_cols=140  Identities=16%  Similarity=0.139  Sum_probs=91.0

Q ss_pred             HHHHHHHHcCCCEEE--eCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH
Q 021156          145 DNSLSYIEEGATHVI--VTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF  222 (316)
Q Consensus       145 e~~~~~l~~Gad~VV--igt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~  222 (316)
                      ++++++.+.|...+=  +|....+.   +.+.++.+.+.+|+ .+-+.+|+.          .+|...   ....+++.+
T Consensus       166 ~~a~~~~~~Gf~~~Kikvg~~~~~~---di~~v~avRe~~G~-~~~l~vDaN----------~~w~~~---~A~~~~~~l  228 (385)
T cd03326         166 DEMRRYLDRGYTVVKIKIGGAPLDE---DLRRIEAALDVLGD-GARLAVDAN----------GRFDLE---TAIAYAKAL  228 (385)
T ss_pred             HHHHHHHHCCCCEEEEeCCCCCHHH---HHHHHHHHHHhcCC-CCeEEEECC----------CCCCHH---HHHHHHHHh
Confidence            456777888977543  44322221   37889999999985 567888873          246432   356677777


Q ss_pred             HHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCc----CEEEEccchhhccCcc
Q 021156          223 LASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGR----VDVTVGSALDIFGGNL  298 (316)
Q Consensus       223 ~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~----~gVivG~Al~~~~g~~  298 (316)
                      .+.++..+       +.=...-|++.++++++.+++||.+.=-+.+..++.++++.+. +    +.+-+=-+-  .+|-.
T Consensus       229 ~~~~~~~i-------EeP~~~~d~~~~~~L~~~~~iPIa~gEs~~~~~~~~~li~~~a-~~~~~div~~d~~~--~GGit  298 (385)
T cd03326         229 APYGLRWY-------EEPGDPLDYALQAELADHYDGPIATGENLFSLQDARNLLRYGG-MRPDRDVLQFDPGL--SYGLP  298 (385)
T ss_pred             hCcCCCEE-------ECCCCccCHHHHHHHHhhCCCCEEcCCCcCCHHHHHHHHHhCC-ccccCCEEEeCchh--hCCHH
Confidence            77665533       1111223789999999999999888777889999999999872 3    444444333  45544


Q ss_pred             cHHHHHHHHHhhc
Q 021156          299 AYKDVVAWHAQQE  311 (316)
Q Consensus       299 ~~~~~~~~~~~~~  311 (316)
                      ...++.+.+.++.
T Consensus       299 ~~~kia~lA~a~g  311 (385)
T cd03326         299 EYLRMLDVLEAHG  311 (385)
T ss_pred             HHHHHHHHHHHcC
Confidence            5556655555543

Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.

>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]

Probab=91.84  E-value=0.69  Score=41.51  Aligned_cols=51  Identities=22%  Similarity=0.237  Sum_probs=40.7

Q ss_pred             HHHHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHH
Q 021156          124 AAIEALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLV  179 (316)
Q Consensus       124 ~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~  179 (316)
                      .+.+.+.+.+.+++.-|.++ .+++++.++.||+-|++|++.-+     |+.+.++.
T Consensus       171 ~lvk~l~~~~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGsAITR-----p~~It~~F  222 (229)
T COG3010         171 QLVKQLSDAGCRVIAEGRYNTPEQAKKAIEIGADAVVVGSAITR-----PEEITQWF  222 (229)
T ss_pred             HHHHHHHhCCCeEEeeCCCCCHHHHHHHHHhCCeEEEECcccCC-----HHHHHHHH
Confidence            34444555889999999998 59999999999999999998655     76665543

>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed

Probab=91.84  E-value=8.8  Score=37.42  Aligned_cols=162  Identities=13%  Similarity=0.097  Sum_probs=100.2

Q ss_pred             HHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCee
Q 021156          122 KAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKY  200 (316)
Q Consensus       122 ~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~  200 (316)
                      ...+.+.+++.++|+..  =+. .++++.+.+. +|.+=||+....|    .++++++.+. | .-|++    +  .|. 
T Consensus       171 l~~L~~~~~~~Gl~~~t--~v~d~~~~~~l~~~-vd~lkI~s~~~~n----~~LL~~~a~~-g-kPVil----k--~G~-  234 (360)
T PRK12595        171 LKILKQVADEYGLAVIS--EIVNPADVEVALDY-VDVIQIGARNMQN----FELLKAAGRV-N-KPVLL----K--RGL-  234 (360)
T ss_pred             HHHHHHHHHHcCCCEEE--eeCCHHHHHHHHHh-CCeEEECcccccC----HHHHHHHHcc-C-CcEEE----e--CCC-
Confidence            34556666778888776  344 5788888888 9999999999997    8898888753 3 12222    2  120 


Q ss_pred             EEEeCCcceecccCHHHHHHHHHHcCCCEEEE-e-ecCCcc--ccCCCCHHHHHHHhhcCCCcEEE-EeCCCC---HH--
Q 021156          201 AIVTDRWQKFSDVYLDERVLDFLASYADEFLV-H-GVDVEG--KKLGIDDELVALLGKYSPIPVTY-AGGVTT---MA--  270 (316)
Q Consensus       201 ~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilv-t-di~~dG--~~~G~d~eli~~l~~~~~iPVIa-sGGI~s---~e--  270 (316)
                            +  .+--+....+..+.+.|...+++ | .++.=.  +..-.|+..+..+++..++||++ +.....   ..  
T Consensus       235 ------~--~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~~~~PV~~d~~Hs~G~r~~~~~  306 (360)
T PRK12595        235 ------S--ATIEEFIYAAEYIMSQGNGQIILCERGIRTYEKATRNTLDISAVPILKQETHLPVMVDVTHSTGRRDLLLP  306 (360)
T ss_pred             ------C--CCHHHHHHHHHHHHHCCCCCEEEECCccCCCCCCCCCCcCHHHHHHHHHHhCCCEEEeCCCCCcchhhHHH
Confidence                  0  01113444566677788866654 4 443211  12335899999999888999999 655443   22  


Q ss_pred             HHHHHHHhCCCcCEEEEcc------chhhccCcccHHHHHHHHHh
Q 021156          271 DLEKIKVAGIGRVDVTVGS------ALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       271 Di~~l~~~G~g~~gVivG~------Al~~~~g~~~~~~~~~~~~~  309 (316)
                      -...+..+|  ++|.++-+      +..-+...++++++.+++.+
T Consensus       307 ~a~aAva~G--Adg~~iE~H~dp~~a~~D~~~sl~p~el~~l~~~  349 (360)
T PRK12595        307 TAKAALAIG--ADGVMAEVHPDPAVALSDSAQQMDIPEFDRFLDE  349 (360)
T ss_pred             HHHHHHHcC--CCeEEEEecCCCCCCCCchhhhCCHHHHHHHHHH
Confidence            223344556  89999874      22111234677777776654

>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids

Probab=91.83  E-value=3.8  Score=39.42  Aligned_cols=136  Identities=14%  Similarity=0.056  Sum_probs=86.0

Q ss_pred             HHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHH
Q 021156          145 DNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLA  224 (316)
Q Consensus       145 e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~  224 (316)
                      +++.++.+.|...+=+-.....    +.+.++.+.+.+|  .+-+.+|+.          .+|....   . ..++.+.+
T Consensus       143 ~~~~~~~~~Gf~~~KiKv~~~~----d~~~l~~vr~~~g--~~~l~lDaN----------~~~~~~~---a-~~~~~l~~  202 (354)
T cd03317         143 KQIERYLEEGYKRIKLKIKPGW----DVEPLKAVRERFP--DIPLMADAN----------SAYTLAD---I-PLLKRLDE  202 (354)
T ss_pred             HHHHHHHHcCCcEEEEecChHH----HHHHHHHHHHHCC--CCeEEEECC----------CCCCHHH---H-HHHHHhhc
Confidence            4577777888765422111123    3889999999887  577889983          3565321   2 34566666


Q ss_pred             cCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHH
Q 021156          225 SYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVV  304 (316)
Q Consensus       225 ~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~  304 (316)
                      .++..+     .  .=..-.|++.++++++.+++||.+.=-+.+.+|+.++.+.+ .++.+.+--+.  .+|-....++.
T Consensus       203 ~~i~~i-----E--eP~~~~d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~-~~d~~~ik~~~--~GGit~~~~i~  272 (354)
T cd03317         203 YGLLMI-----E--QPLAADDLIDHAELQKLLKTPICLDESIQSAEDARKAIELG-ACKIINIKPGR--VGGLTEALKIH  272 (354)
T ss_pred             CCccEE-----E--CCCChhHHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcC-CCCEEEecccc--cCCHHHHHHHH
Confidence            554322     1  11222367888999988899987766689999999999987 35655555444  45545555666


Q ss_pred             HHHHhh
Q 021156          305 AWHAQQ  310 (316)
Q Consensus       305 ~~~~~~  310 (316)
                      +++++.
T Consensus       273 ~~A~~~  278 (354)
T cd03317         273 DLCQEH  278 (354)
T ss_pred             HHHHHc
Confidence            555553

NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.

>PRK09016 quinolinate phosphoribosyltransferase; Validated

Probab=91.83  E-value=0.96  Score=42.88  Aligned_cols=66  Identities=18%  Similarity=0.190  Sum_probs=50.7

Q ss_pred             HHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHh--CCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeec
Q 021156           96 AEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHA--YPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        96 ~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~--~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      ++-+....++|++   ++-||.-  ..+.+.++++.  -.+.+.+-|||+.+.+..|.+.|+|.+++|+..+.
T Consensus       218 leea~ea~~~gaD---iI~LDn~--s~e~~~~av~~~~~~~~ieaSGGI~~~ni~~yA~tGVD~Is~galths  285 (296)
T PRK09016        218 LDELDQALKAGAD---IIMLDNF--TTEQMREAVKRTNGRALLEVSGNVTLETLREFAETGVDFISVGALTKH  285 (296)
T ss_pred             HHHHHHHHHcCCC---EEEeCCC--ChHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHhcCCCEEEeCccccC
Confidence            4566666677875   6777743  34556666653  35789999999999999999999999999997765

>PRK06096 molybdenum transport protein ModD; Provisional

Probab=91.83  E-value=2.1  Score=40.43  Aligned_cols=71  Identities=10%  Similarity=0.186  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhc-----CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEcc
Q 021156          215 LDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKY-----SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGS  289 (316)
Q Consensus       215 ~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~-----~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~  289 (316)
                      ..+.++++.+.|++.|.+-.         .+.+.+++..+.     .++.+.+||||. ++.+.++.+.|  ++.+++|.
T Consensus       198 tleqa~ea~~agaDiI~LDn---------~~~e~l~~av~~~~~~~~~~~leaSGGI~-~~ni~~yA~tG--vD~Is~ga  265 (284)
T PRK06096        198 TPKEAIAALRAQPDVLQLDK---------FSPQQATEIAQIAPSLAPHCTLSLAGGIN-LNTLKNYADCG--IRLFITSA  265 (284)
T ss_pred             CHHHHHHHHHcCCCEEEECC---------CCHHHHHHHHHHhhccCCCeEEEEECCCC-HHHHHHHHhcC--CCEEEECc
Confidence            35788899999999887622         233444444332     467899999985 68899999988  88776665


Q ss_pred             chhhccCccc
Q 021156          290 ALDIFGGNLA  299 (316)
Q Consensus       290 Al~~~~g~~~  299 (316)
                      -.  |..+++
T Consensus       266 l~--~a~~~D  273 (284)
T PRK06096        266 PY--YAAPAD  273 (284)
T ss_pred             cc--cCCCcC
Confidence            44  554443

>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1

Probab=91.78  E-value=0.49  Score=44.40  Aligned_cols=46  Identities=22%  Similarity=0.271  Sum_probs=38.0

Q ss_pred             cHHHHHHHHHhCCCcEE--EecCCC-HHHHHHHHHcCCCEEEeCCeeec
Q 021156          121 SKAAAIEALHAYPGGLQ--VGGGIN-SDNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus       121 ~~~~i~~~v~~~~~pl~--vGGGIr-~e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      ..+.+.+..+...+|+.  .=|||. .+++..+++.||+.|++||..++
T Consensus       185 ~~elLkei~~~~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~k  233 (287)
T TIGR00343       185 PVELLLEVLKLGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK  233 (287)
T ss_pred             CHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhc
Confidence            34445555556789998  999995 79999999999999999999985

This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.

>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]

Probab=91.70  E-value=9.7  Score=34.28  Aligned_cols=184  Identities=21%  Similarity=0.176  Sum_probs=111.6

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCCc--ccHHHHHHHHHhCC-CcEEEecCCC--HHHHHHHHH-cCCCEEEeCCeeec
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGADP--LSKAAAIEALHAYP-GGLQVGGGIN--SDNSLSYIE-EGATHVIVTSYVFN  166 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~~--~~~~~i~~~v~~~~-~pl~vGGGIr--~e~~~~~l~-~Gad~VVigt~~~~  166 (316)
                      .+|. -|+...++|++.+=+|--...+  ...+...++++.++ ++ .||==.+  .+++.++.+ .+.+.|=+-..  +
T Consensus        10 t~~e-da~~a~~~gad~iG~If~~~SpR~Vs~~~a~~i~~~v~~~~-~VgVf~n~~~~~i~~i~~~~~ld~VQlHG~--e   85 (208)
T COG0135          10 TRLE-DAKAAAKAGADYIGFIFVPKSPRYVSPEQAREIASAVPKVK-VVGVFVNESIEEILEIAEELGLDAVQLHGD--E   85 (208)
T ss_pred             CCHH-HHHHHHHcCCCEEEEEEcCCCCCcCCHHHHHHHHHhCCCCC-EEEEECCCCHHHHHHHHHhcCCCEEEECCC--C
Confidence            4565 4555667787776666655443  34555666665554 22 3333334  366766665 56777766432  3


Q ss_pred             CCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecC----CccccC
Q 021156          167 NGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVD----VEGKKL  242 (316)
Q Consensus       167 ~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~----~dG~~~  242 (316)
                          ++++++++...++ -.|+-.+-+.  .+            .  +  .........-++.++ .|-.    .-|+.+
T Consensus        86 ----~~~~~~~l~~~~~-~~v~kai~v~--~~------------~--~--~~~~~~~~~~~d~~L-lDa~~~~~~GGtG~  141 (208)
T COG0135          86 ----DPEYIDQLKEELG-VPVIKAISVS--EE------------G--D--LELAAREEGPVDAIL-LDAKVPGLPGGTGQ  141 (208)
T ss_pred             ----CHHHHHHHHhhcC-CceEEEEEeC--Cc------------c--c--hhhhhhccCCccEEE-EcCCCCCCCCCCCc
Confidence                3999999988763 4566666654  11            0  0  111122223366655 4432    467778


Q ss_pred             CCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCc-CEEEEccchhhccCcccHHHHHHHHHh
Q 021156          243 GIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGR-VDVTVGSALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       243 G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~-~gVivG~Al~~~~g~~~~~~~~~~~~~  309 (316)
                      .+||+++...  ....|++.+||+. ++.+.++.+.+  + .++=+.|++=..-|.=+.+.+.++.++
T Consensus       142 ~fDW~~l~~~--~~~~~~~LAGGL~-p~NV~~ai~~~--~p~gvDvSSGVE~~pG~KD~~kv~~f~~~  204 (208)
T COG0135         142 TFDWNLLPKL--RLSKPVMLAGGLN-PDNVAEAIALG--PPYGVDVSSGVESSPGIKDPAKVKAFFEA  204 (208)
T ss_pred             EECHHHhccc--cccCCEEEECCCC-HHHHHHHHHhc--CCceEEeccccccCCCCCCHHHHHHHHHH
Confidence            8899998887  3466899999985 58899999888  5 888889888222233455555555544

>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1

Probab=91.66  E-value=4.2  Score=36.37  Aligned_cols=151  Identities=16%  Similarity=0.057  Sum_probs=79.2

Q ss_pred             HHHHHHHhCCCcEEEec-----CCCH-HHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHH---hcCceEEEeeeee
Q 021156          124 AAIEALHAYPGGLQVGG-----GINS-DNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRV---VGKQRLVLDLSCR  194 (316)
Q Consensus       124 ~i~~~v~~~~~pl~vGG-----GIr~-e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~---~G~~~IvvslD~k  194 (316)
                      .+++.+++.+.++..+-     |-.. ..++.++++|||.+.+-...-      ++.++.+.+.   +|+.-+++. ..-
T Consensus        40 ~~v~~l~~~~~~v~lD~K~~Dig~t~~~~~~~~~~~gad~vTvh~~~g------~~~l~~~~~~~~~~~~~v~~v~-~ls  112 (213)
T TIGR01740        40 KIIDELAKLNKLIFLDLKFADIPNTVKLQYESKIKQGADMVNVHGVAG------SESVEAAKEAASEGGRGLLAVT-ELT  112 (213)
T ss_pred             HHHHHHHHcCCCEEEEEeecchHHHHHHHHHHHHhcCCCEEEEcCCCC------HHHHHHHHHHhhcCCCeEEEEE-cCC
Confidence            34455555444565665     2222 346778899999998876432      4545555543   432212222 111


Q ss_pred             ecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHH--HH
Q 021156          195 KKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMA--DL  272 (316)
Q Consensus       195 ~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~e--Di  272 (316)
                       ..+.     ..|.........++++...+.|...++ +         .  -+.++.+++..+-.++..+||+-..  ..
T Consensus       113 -s~~~-----~~~~~~~~~~v~~~a~~~~~~g~~g~v-~---------~--~~~~~~ir~~~~~~~~vtPGI~~~g~~~~  174 (213)
T TIGR01740       113 -SMGS-----LDYGEDTMEKVLEYAKEAKAFGLDGPV-C---------S--AEEAKEIRKFTGDFLILTPGIRLQSKGAD  174 (213)
T ss_pred             -CCCh-----hhhCcCHHHHHHHHHHHhhhcCCeEEE-e---------C--HHHHHHHHHhcCCceEEeCCcCCCCCCcC
Confidence             0110     012111111344556666666665443 1         1  1233444443332579999998542  22


Q ss_pred             --------HHHHHhCCCcCEEEEccchhhccCcccHHHHH
Q 021156          273 --------EKIKVAGIGRVDVTVGSALDIFGGNLAYKDVV  304 (316)
Q Consensus       273 --------~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~  304 (316)
                              ..+.+.|  ++-+++||++  |+.+ ++.+..
T Consensus       175 dq~~~~~~~~~~~~G--ad~iVvGr~I--~~~~-d~~~~~  209 (213)
T TIGR01740       175 DQQRVVTLEDAKEAG--ADVIIVGRGI--YAAE-DPVEAA  209 (213)
T ss_pred             CccccCCHHHHHHcC--CCEEEEChhh--cCCC-CHHHHH
Confidence                    6677787  8889999999  7643 454443

This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.

>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase

Probab=91.65  E-value=1.1  Score=41.27  Aligned_cols=65  Identities=22%  Similarity=0.173  Sum_probs=46.7

Q ss_pred             HHHHHHcCCCcceEEEecCCcccHHHHHHHHHhCCCcEEEecCCC-------HHHHHHHHHcCCCEEEeCCeeecC
Q 021156           99 ANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAYPGGLQVGGGIN-------SDNSLSYIEEGATHVIVTSYVFNN  167 (316)
Q Consensus        99 a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~~~pl~vGGGIr-------~e~~~~~l~~Gad~VVigt~~~~~  167 (316)
                      ++...+.|++.+..-    .....+.+.+.++..++|+-+-|||+       .+.+..++++||+.+.+|+..++.
T Consensus       162 ~~~a~~~GADyikt~----~~~~~~~l~~~~~~~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~  233 (258)
T TIGR01949       162 ARLGAELGADIVKTP----YTGDIDSFRDVVKGCPAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQH  233 (258)
T ss_pred             HHHHHHHCCCEEecc----CCCCHHHHHHHHHhCCCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcC
Confidence            455566788866642    12234555556566789998889998       345677779999999999998875

Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.

>TIGR00419 tim triosephosphate isomerase

Probab=91.62  E-value=2.4  Score=38.09  Aligned_cols=117  Identities=15%  Similarity=0.114  Sum_probs=69.1

Q ss_pred             HHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHh--cCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHH
Q 021156          146 NSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVV--GKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFL  223 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~--G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~  223 (316)
                      ..+.+.++|++.|+||=.-++-++-|  .-+++....  | =..+++++.-                     .+   +..
T Consensus        73 S~~mLkd~G~~~viiGHSERRf~Etd--i~~Kv~~a~~~g-l~~IvCi~~v---------------------~~---q~~  125 (205)
T TIGR00419        73 SAEMLKDIGAKGTLINHSERRMKLAD--IEKKIARLKELG-LTSVVCTNNV---------------------LT---TAA  125 (205)
T ss_pred             CHHHHHHcCCCEEEECcccCCCCccH--HHHHHHHHHHCC-CEEEEEEHHH---------------------HH---HHH
Confidence            37788899999999997655433333  233333322  2 2345555431                     00   111


Q ss_pred             HcCCCE--EEEeecCCccccCCCCHHHHHH----Hh---h-cCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          224 ASYADE--FLVHGVDVEGKKLGIDDELVAL----LG---K-YSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       224 ~~Ga~~--ilvtdi~~dG~~~G~d~eli~~----l~---~-~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      ....+.  |-|-.+..-||..-...+-.++    ++   + ..+++|+++|+|..-++...+...+  ++|+.||+|.
T Consensus       126 ~~~~~~~vIAYEPvWAIGtG~~as~~~~~~v~~~ir~~~~~~~~~~IlYGGSV~~~N~~~l~~~~~--iDG~LvG~As  201 (205)
T TIGR00419       126 AAALEPDVVAVEPPELIGTGIPVSPAQPEVVHGSVRAVKEVNESVRVLCGAGISTGEDAELAAQLG--AEGVLLASGS  201 (205)
T ss_pred             hhhhcCeEEEECCHHHhCCCCCCCHHHHHHHHHHHHhhhhhcCCceEEEeCCCCHHHHHHHhcCCC--CCEEEEeeee
Confidence            111232  2356677778776554332222    22   1 1358999999999987777776666  9999999987

Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=91.58  E-value=0.55  Score=50.14  Aligned_cols=83  Identities=16%  Similarity=0.129  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHcCCCcceEEEecCCc-----------ccHHHHHHHHH-hCCCcEEEecCCC-HHHHHHHHHcC-CCEEEe
Q 021156           95 AAEFANLYKEDGLTGGHAIMLGADP-----------LSKAAAIEALH-AYPGGLQVGGGIN-SDNSLSYIEEG-ATHVIV  160 (316)
Q Consensus        95 p~e~a~~~~~~G~~~l~lvDLda~~-----------~~~~~i~~~v~-~~~~pl~vGGGIr-~e~~~~~l~~G-ad~VVi  160 (316)
                      -+++|+.+++.|++.++   +.++.           .-.....+.++ .+++|+++-|+|+ .++++++++.| ||.|.+
T Consensus       640 ~~~~~~~l~~~g~d~i~---vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~  716 (765)
T PRK08255        640 AVEIARAFKAAGADLID---VSSGQVSKDEKPVYGRMYQTPFADRIRNEAGIATIAVGAISEADHVNSIIAAGRADLCAL  716 (765)
T ss_pred             HHHHHHHHHhcCCcEEE---eCCCCCCcCCCCCcCccccHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHcCCcceeeE
Confidence            34788888888876544   44220           00112223344 4789999999998 59999999876 999999


Q ss_pred             CCeeecCCCCCHHHHHHHHHHhcC
Q 021156          161 TSYVFNNGQMDLERLKDLVRVVGK  184 (316)
Q Consensus       161 gt~~~~~~~~~~eli~ei~~~~G~  184 (316)
                      |-.++.|    |+++.+..+++|.
T Consensus       717 gR~~l~d----P~~~~~~~~~~~~  736 (765)
T PRK08255        717 ARPHLAD----PAWTLHEAAEIGY  736 (765)
T ss_pred             cHHHHhC----ccHHHHHHHHcCC
Confidence            9999998    9999999888863

>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]

Probab=91.57  E-value=0.25  Score=47.65  Aligned_cols=71  Identities=18%  Similarity=0.066  Sum_probs=53.0

Q ss_pred             HHHHHHHHcCCCcceEEEecCC-c-c----c--HHHHH-HHHHhCC-CcEEEecCCCH-HHHHHHHHcCCCEEEeCCeee
Q 021156           97 EFANLYKEDGLTGGHAIMLGAD-P-L----S--KAAAI-EALHAYP-GGLQVGGGINS-DNSLSYIEEGATHVIVTSYVF  165 (316)
Q Consensus        97 e~a~~~~~~G~~~l~lvDLda~-~-~----~--~~~i~-~~v~~~~-~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~  165 (316)
                      ..|+...+.|++.+...=-+++ . .    .  ...++ +++..+. +|++..|||-+ +++..++..||+-|-+||.++
T Consensus       138 ~~A~~~~~~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~~~iPViAAGGI~dg~~i~AAlalGA~gVq~GT~Fl  217 (336)
T COG2070         138 REALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAVDGIPVIAAGGIADGRGIAAALALGADGVQMGTRFL  217 (336)
T ss_pred             HHHHHHHhCCCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHhcCCCEEEecCccChHHHHHHHHhccHHHHhhhhhh
Confidence            4777788888887666666543 1 1    1  12233 3444677 89999999985 999999999999999999998


Q ss_pred             cC
Q 021156          166 NN  167 (316)
Q Consensus       166 ~~  167 (316)
                      -.
T Consensus       218 ~t  219 (336)
T COG2070         218 AT  219 (336)
T ss_pred             cc
Confidence            65

>PRK11572 copper homeostasis protein CutC; Provisional

Probab=91.56  E-value=3  Score=38.56  Aligned_cols=100  Identities=16%  Similarity=0.116  Sum_probs=63.7

Q ss_pred             HHHHHHHHHcCCCEEEeCCeeecCC-CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH
Q 021156          144 SDNSLSYIEEGATHVIVTSYVFNNG-QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF  222 (316)
Q Consensus       144 ~e~~~~~l~~Gad~VVigt~~~~~~-~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~  222 (316)
                      .+++..+.+.||+|+=+-+.....| .-.+.+++.+.+... -.+.+.|=-|  .|- .+++..  + . ....+.++.+
T Consensus        11 ~~~a~~A~~~GAdRiELc~~L~~GGlTPS~g~i~~~~~~~~-ipv~vMIRPR--~gd-F~Ys~~--E-~-~~M~~di~~~   82 (248)
T PRK11572         11 MECALTAQQAGADRIELCAAPKEGGLTPSLGVLKSVRERVT-IPVHPIIRPR--GGD-FCYSDG--E-F-AAMLEDIATV   82 (248)
T ss_pred             HHHHHHHHHcCCCEEEEccCcCCCCcCCCHHHHHHHHHhcC-CCeEEEEecC--CCC-CCCCHH--H-H-HHHHHHHHHH
Confidence            5889999999999998866655544 234788888887652 2344444332  331 222110  0 0 1244567888


Q ss_pred             HHcCCCEEEEeecCCccccCCCCHHHHHHHhh
Q 021156          223 LASYADEFLVHGVDVEGKKLGIDDELVALLGK  254 (316)
Q Consensus       223 ~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~  254 (316)
                      .+.|++.|++=-.+.||+   .|.+.++++.+
T Consensus        83 ~~~GadGvV~G~L~~dg~---vD~~~~~~Li~  111 (248)
T PRK11572         83 RELGFPGLVTGVLDVDGH---VDMPRMRKIMA  111 (248)
T ss_pred             HHcCCCEEEEeeECCCCC---cCHHHHHHHHH
Confidence            999999998877777765   56666666544

>PRK11197 lldD L-lactate dehydrogenase; Provisional

Probab=91.52  E-value=0.3  Score=47.95  Aligned_cols=70  Identities=20%  Similarity=0.062  Sum_probs=48.0

Q ss_pred             HHHHHHHHcCCCcceEEEecCCc-----ccHHHHHHHHHhC--CCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeeec
Q 021156           97 EFANLYKEDGLTGGHAIMLGADP-----LSKAAAIEALHAY--PGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        97 e~a~~~~~~G~~~l~lvDLda~~-----~~~~~i~~~v~~~--~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      +-|+...+.|++.+.+-.-.+..     .....+.++.+.+  .+||++.||||. .|+-+++..||+.|.+|+.++.
T Consensus       257 ~dA~~a~~~Gvd~I~Vs~hGGr~~d~~~~t~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALaLGA~~V~iGr~~l~  334 (381)
T PRK11197        257 EDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDITILADSGIRNGLDVVRMIALGADTVLLGRAFVY  334 (381)
T ss_pred             HHHHHHHhCCCCEEEECCCCCCCCCCcccHHHHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHHcCcCceeEhHHHHH
Confidence            36677778888865543322211     1122233333333  589999999995 9999999999999999998765

>PRK06256 biotin synthase; Validated

Probab=91.52  E-value=13  Score=35.39  Aligned_cols=183  Identities=16%  Similarity=0.105  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHcCCCcceEEEecCCccc--HHHH---HHHHH-hCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecC
Q 021156           95 AAEFANLYKEDGLTGGHAIMLGADPLS--KAAA---IEALH-AYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNN  167 (316)
Q Consensus        95 p~e~a~~~~~~G~~~l~lvDLda~~~~--~~~i---~~~v~-~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~  167 (316)
                      .++.++.+.+.|+.+++++.-......  .+.+   ++.++ ..++.+.+-.|.- .+.++.+.++|++.+.+|-.. .+
T Consensus        96 I~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~~~i~~~~~~g~l~~e~l~~LkeaG~~~v~~~lEt-s~  174 (336)
T PRK06256         96 LIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEETDLEICACLGLLTEEQAERLKEAGVDRYNHNLET-SR  174 (336)
T ss_pred             HHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhcCCCcEEecCCcCCHHHHHHHHHhCCCEEecCCcc-CH
Confidence            344555555678777666642221111  1233   33333 2456677777876 478999999999999887554 21


Q ss_pred             -------CCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecC-Ccc
Q 021156          168 -------GQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVD-VEG  239 (316)
Q Consensus       168 -------~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~-~dG  239 (316)
                             +.-+.+...+..+......+-++..        .+.-.+.   +.-+..+.+..+.+.+++.+-++... ..|
T Consensus       175 ~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~--------~I~GlgE---t~ed~~~~~~~l~~l~~~~v~i~~l~P~pG  243 (336)
T PRK06256        175 SYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSG--------GIIGMGE---SLEDRVEHAFFLKELDADSIPINFLNPIPG  243 (336)
T ss_pred             HHHhhcCCCCCHHHHHHHHHHHHHcCCeeccC--------eEEeCCC---CHHHHHHHHHHHHhCCCCEEeecccccCCC
Confidence                   0011221212222211111211111        2221222   22356778888888999987655432 245


Q ss_pred             cc----CCC-CHHHHHHHh--h--cCCCcEEEEeCC-CCHHHHHHHHHhCCCcCEEEEccch
Q 021156          240 KK----LGI-DDELVALLG--K--YSPIPVTYAGGV-TTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       240 ~~----~G~-d~eli~~l~--~--~~~iPVIasGGI-~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      |-    ..+ +.+.++.++  +  ..+..+.++||= ....|...+.-.|  +.++|+|--|
T Consensus       244 T~l~~~~~~~~~e~l~~ia~~Rl~~p~~~I~~~~gr~~~~~~~~~~~~~g--~~~~~~g~~l  303 (336)
T PRK06256        244 TPLENHPELTPLECLKTIAIFRLINPDKEIRIAGGREVNLRSLQPLGLGG--ANSVIVGNYL  303 (336)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCCeeEecCchhhhchhhHHHHhcc--CceeeECCcc
Confidence            42    122 445554443  2  245778788885 4556664444345  9999999877

>PRK02261 methylaspartate mutase subunit S; Provisional

Probab=91.52  E-value=2.7  Score=35.13  Aligned_cols=88  Identities=14%  Similarity=-0.039  Sum_probs=56.8

Q ss_pred             cCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhc-C-CCcEEEEeCCC-----CHHHHHHHHHhCCCcCEE
Q 021156          213 VYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKY-S-PIPVTYAGGVT-----TMADLEKIKVAGIGRVDV  285 (316)
Q Consensus       213 ~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~-~-~iPVIasGGI~-----s~eDi~~l~~~G~g~~gV  285 (316)
                      ..+.+++..+.+..++.+.+.....  +....=.++++.+++. . +++|+++|.+.     ..++..++.++|  ++  
T Consensus        41 vp~e~i~~~a~~~~~d~V~lS~~~~--~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G--~~--  114 (137)
T PRK02261         41 TSQEEFIDAAIETDADAILVSSLYG--HGEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMG--FD--  114 (137)
T ss_pred             CCHHHHHHHHHHcCCCEEEEcCccc--cCHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcC--CC--
Confidence            3577888889999999776544322  1111113456666554 3 67888888774     245667888888  53  


Q ss_pred             EEccchhhccCcccHHHHHHHHHhhcc
Q 021156          286 TVGSALDIFGGNLAYKDVVAWHAQQEA  312 (316)
Q Consensus       286 ivG~Al~~~~g~~~~~~~~~~~~~~~~  312 (316)
                          +.  |...-+++++++|++++.+
T Consensus       115 ----~v--f~~~~~~~~i~~~l~~~~~  135 (137)
T PRK02261        115 ----RV--FPPGTDPEEAIDDLKKDLN  135 (137)
T ss_pred             ----EE--ECcCCCHHHHHHHHHHHhc
Confidence                34  6656688999999887643

>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional

Probab=91.51  E-value=12  Score=34.93  Aligned_cols=193  Identities=13%  Similarity=0.056  Sum_probs=116.4

Q ss_pred             cCCccCHHHHHHHHHHcCCCcceEEEec-CC---------cccHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCE
Q 021156           89 FESDKSAAEFANLYKEDGLTGGHAIMLG-AD---------PLSKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEEGATH  157 (316)
Q Consensus        89 ~~~~~~p~e~a~~~~~~G~~~l~lvDLd-a~---------~~~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~  157 (316)
                      .++.....++|+.+.+.|+..+..-..+ .+         ......+.+.+++.++|+..  =+- .++++.+.+. ++.
T Consensus        37 ie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~t--e~~d~~~~~~l~~~-vd~  113 (266)
T PRK13398         37 VESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVT--EVMDTRDVEEVADY-ADM  113 (266)
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEE--eeCChhhHHHHHHh-CCE
Confidence            3333456689999999887643333222 11         11233455555667777665  343 4677877777 999


Q ss_pred             EEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCC
Q 021156          158 VIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDV  237 (316)
Q Consensus       158 VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~  237 (316)
                      .-||+...+|    .++++++. ..| .-    +=++  +|.     .    .+--+....++.+...|-..+++..+  
T Consensus       114 ~kIga~~~~n----~~LL~~~a-~~g-kP----V~lk--~G~-----~----~s~~e~~~A~e~i~~~Gn~~i~L~~r--  170 (266)
T PRK13398        114 LQIGSRNMQN----FELLKEVG-KTK-KP----ILLK--RGM-----S----ATLEEWLYAAEYIMSEGNENVVLCER--  170 (266)
T ss_pred             EEECcccccC----HHHHHHHh-cCC-Cc----EEEe--CCC-----C----CCHHHHHHHHHHHHhcCCCeEEEEEC--
Confidence            9999999997    88998885 343 12    2222  231     0    01112444566677788877655333  


Q ss_pred             cc-ccCCC-----CHHHHHHHhhcCCCcEEE-EeCCCC-----HHHHHHHHHhCCCcCEEEEcc------chhhccCccc
Q 021156          238 EG-KKLGI-----DDELVALLGKYSPIPVTY-AGGVTT-----MADLEKIKVAGIGRVDVTVGS------ALDIFGGNLA  299 (316)
Q Consensus       238 dG-~~~G~-----d~eli~~l~~~~~iPVIa-sGGI~s-----~eDi~~l~~~G~g~~gVivG~------Al~~~~g~~~  299 (316)
                      -+ +..++     |+..+..+++..+.||++ +.....     .........+|  ++|+||-+      |+--+...++
T Consensus       171 G~~t~~~Y~~~~vdl~~i~~lk~~~~~pV~~D~sHs~G~~~~v~~~~~aAva~G--a~Gl~iE~H~~pd~a~~D~~~sl~  248 (266)
T PRK13398        171 GIRTFETYTRNTLDLAAVAVIKELSHLPIIVDPSHATGRRELVIPMAKAAIAAG--ADGLMIEVHPEPEKALSDARQTLN  248 (266)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhccCCCEEEeCCCcccchhhHHHHHHHHHHcC--CCEEEEeccCCccccCCchhhcCC
Confidence            11 12222     667788888777899999 565555     55566666667  89999875      3311223467


Q ss_pred             HHHHHHHHHh
Q 021156          300 YKDVVAWHAQ  309 (316)
Q Consensus       300 ~~~~~~~~~~  309 (316)
                      ++++.+++++
T Consensus       249 p~~l~~l~~~  258 (266)
T PRK13398        249 FEEMKELVDE  258 (266)
T ss_pred             HHHHHHHHHH
Confidence            7777776654

>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=91.48  E-value=1.2  Score=41.97  Aligned_cols=65  Identities=15%  Similarity=0.136  Sum_probs=47.9

Q ss_pred             HHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHh--CCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeec
Q 021156           97 EFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHA--YPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        97 e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~--~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      +.++...++|++   ++-||.-  +.+.+.+++..  -...+.+-|||+.+.+..|...|+|.+++|+..+.
T Consensus       204 ee~~ea~~~gaD---iImLDn~--s~e~l~~av~~~~~~~~leaSGgI~~~ni~~yA~tGVD~Is~galths  270 (281)
T PRK06543        204 DQIEPVLAAGVD---TIMLDNF--SLDDLREGVELVDGRAIVEASGNVNLNTVGAIASTGVDVISVGALTHS  270 (281)
T ss_pred             HHHHHHHhcCCC---EEEECCC--CHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHhcCCCEEEeCccccC
Confidence            345555567765   7777742  34455555542  23579999999999999999999999999997765

>PLN02429 triosephosphate isomerase

Probab=91.37  E-value=2.4  Score=40.58  Aligned_cols=147  Identities=15%  Similarity=0.052  Sum_probs=79.0

Q ss_pred             HHHHHHHcCCCEEEeCCeeecC--CCCCHHHHHHHHHHh--cCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHH
Q 021156          146 NSLSYIEEGATHVIVTSYVFNN--GQMDLERLKDLVRVV--GKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLD  221 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~~~~~--~~~~~eli~ei~~~~--G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~  221 (316)
                      .++.+.+.|++.|+||=.-++.  ++.|...-+++....  | =..+++++-...     -+-.| .  +..-+.+.++.
T Consensus       139 Sa~mLkd~Gv~~ViiGHSERR~~f~Etd~~V~~Kv~~al~~G-L~pIvCIGE~l~-----ere~g-~--t~~vi~~Ql~~  209 (315)
T PLN02429        139 SVEQLKDLGCKWVILGHSERRHVIGEKDEFIGKKAAYALSEG-LGVIACIGEKLE-----EREAG-K--TFDVCFAQLKA  209 (315)
T ss_pred             CHHHHHHcCCCEEEeCccccCCCCCcCHHHHHHHHHHHHHCc-CEEEEEcCCCHH-----HHhCC-C--HHHHHHHHHHH
Confidence            3788889999999999765543  333333333333322  2 245666653100     00000 0  00001111222


Q ss_pred             HHHcCC---CEE--EEeecCCccccCCCCHHHHHH----Hh----h------cCCCcEEEEeCCCCHHHHHHHHHhCCCc
Q 021156          222 FLASYA---DEF--LVHGVDVEGKKLGIDDELVAL----LG----K------YSPIPVTYAGGVTTMADLEKIKVAGIGR  282 (316)
Q Consensus       222 ~~~~Ga---~~i--lvtdi~~dG~~~G~d~eli~~----l~----~------~~~iPVIasGGI~s~eDi~~l~~~G~g~  282 (316)
                      ..+ ++   +.+  -|-.+..-|+..-...+-+++    ++    +      ..+++|+++|+|..-++...+...+  +
T Consensus       210 ~l~-~v~~~~~ivIAYEPvWAIGTGk~as~e~~~~v~~~IR~~l~~~~~~~va~~irILYGGSV~~~N~~el~~~~d--i  286 (315)
T PLN02429        210 FAD-AVPSWDNIVVAYEPVWAIGTGKVASPQQAQEVHVAVRGWLKKNVSEEVASKTRIIYGGSVNGGNSAELAKEED--I  286 (315)
T ss_pred             HHc-cCCcccceEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhccCceEEEcCccCHHHHHHHhcCCC--C
Confidence            221 12   222  256777778876654443332    22    1      1258999999999877766666655  9


Q ss_pred             CEEEEccchhhccCcccHHHHHHHH
Q 021156          283 VDVTVGSALDIFGGNLAYKDVVAWH  307 (316)
Q Consensus       283 ~gVivG~Al~~~~g~~~~~~~~~~~  307 (316)
                      ||+.||+|.  ++ .=.|.++.+..
T Consensus       287 DG~LVGgAS--L~-~~~F~~Ii~~~  308 (315)
T PLN02429        287 DGFLVGGAS--LK-GPEFATIVNSV  308 (315)
T ss_pred             CEEEeecce--ec-HHHHHHHHHHH
Confidence            999999999  73 23455555543

>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E

Probab=91.29  E-value=4.4  Score=39.42  Aligned_cols=150  Identities=11%  Similarity=0.083  Sum_probs=88.5

Q ss_pred             CCcEEEecCCCH--HHHHHHHHcC-----------CCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCe
Q 021156          133 PGGLQVGGGINS--DNSLSYIEEG-----------ATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGK  199 (316)
Q Consensus       133 ~~pl~vGGGIr~--e~~~~~l~~G-----------ad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~  199 (316)
                      ++-+-.+=|-..  +.+++++++|           ++.|.++...+.- +-|.+..+++++...  ..-+++-.-.  | 
T Consensus       101 PValHLDHg~~~~~~~i~~ai~ag~~~~~~~g~~gftSVMiDgS~lpf-eENI~~TrevVe~Ah--~~GvsVEaEL--G-  174 (357)
T TIGR01520       101 PVVLHTDHCAKKLLPWVDGLLEAGEKYFSAHGKPLFSSHMIDLSEEPI-EENIEICVKYLKRMA--KIKMWLEIEI--G-  174 (357)
T ss_pred             CEEEECCCCCCcchHHHHHHHHhhhhhhhhcCCCCCceEEeeCCCCCH-HHHHHHHHHHHHHHH--HcCCEEEEEe--c-
Confidence            334455666654  5588888886           8889886554421 003566666665431  1123443311  1 


Q ss_pred             eEEE-eCCc---ce----ecccCHHHHHHHHHHc----CCCEEEEeecCCccccC-C---CCHHHHHHH----hhcCCCc
Q 021156          200 YAIV-TDRW---QK----FSDVYLDERVLDFLAS----YADEFLVHGVDVEGKKL-G---IDDELVALL----GKYSPIP  259 (316)
Q Consensus       200 ~~v~-~~gw---~~----~~~~~~~e~a~~~~~~----Ga~~ilvtdi~~dG~~~-G---~d~eli~~l----~~~~~iP  259 (316)
                       .|. ..+.   ..    ..--++.+..+...+.    |++.+-+--=+.-|.+. +   .|+++++++    .+.+++|
T Consensus       175 -~vgG~Ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~~TgvD~LAvAiGT~HG~Yk~~~p~Ld~d~L~~I~~~~~~~~~vP  253 (357)
T TIGR01520       175 -ITGGEEDGVDNSHMDAEALYTQPEDVYYAYEELSKISPNFSIAAAFGNVHGVYKPGNVKLTPDILADGQEYVSEKLGLP  253 (357)
T ss_pred             -ccCCccCCcccccccccccCCCHHHHHHHHHHhccCCCcceeeeeeccccCCcCCCCCccCHHHHHHHHHHHHHhcCCC
Confidence             110 0111   00    0012455544545544    77876433324456662 3   499999999    4566788


Q ss_pred             ------EEEEeCCCCH-HHHHHHHHhCCCcCEEEEccch
Q 021156          260 ------VTYAGGVTTM-ADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       260 ------VIasGGI~s~-eDi~~l~~~G~g~~gVivG~Al  291 (316)
                            +..-||=+.. ++++++.+.|  +..|=+++-+
T Consensus       254 ~~~~~pLVLHGgSGi~~e~i~kai~~G--I~KINi~Tdl  290 (357)
T TIGR01520       254 AAKPLFFVFHGGSGSTKQEIKEALSYG--VVKMNIDTDT  290 (357)
T ss_pred             cCCCCcEEEeCCCCCCHHHHHHHHHCC--CeEEEeCcHH
Confidence                  8888887766 8899999998  9999999877

coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=91.29  E-value=8.6  Score=38.53  Aligned_cols=154  Identities=13%  Similarity=0.121  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHcCCCcceEEEecCCcc-cHHHHHHHHHhCCCcEEEecC-CCH-HHHHHHHH--cCCCEEEeCCeeecCCC
Q 021156           95 AAEFANLYKEDGLTGGHAIMLGADPL-SKAAAIEALHAYPGGLQVGGG-INS-DNSLSYIE--EGATHVIVTSYVFNNGQ  169 (316)
Q Consensus        95 p~e~a~~~~~~G~~~l~lvDLda~~~-~~~~i~~~v~~~~~pl~vGGG-Ir~-e~~~~~l~--~Gad~VVigt~~~~~~~  169 (316)
                      ...+|..+.+.| ..+.+++.|.-.+ ....+.......++|+..... -.. +-+..+++  ...|.|+|+|+-+..  
T Consensus       112 aakLA~~L~~~g-~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~~~~DvVIIDTAGr~~--  188 (437)
T PRK00771        112 AAKLARYFKKKG-LKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKFKKADVIIVDTAGRHA--  188 (437)
T ss_pred             HHHHHHHHHHcC-CeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHhhcCCEEEEECCCccc--
Confidence            556888787776 4678888875322 122233344557788765432 232 32444333  246999999995432  


Q ss_pred             CCHHHHHHHHH---HhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHH-cCCCEEEEeecCCccccCCCC
Q 021156          170 MDLERLKDLVR---VVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLA-SYADEFLVHGVDVEGKKLGID  245 (316)
Q Consensus       170 ~~~eli~ei~~---~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~-~Ga~~ilvtdi~~dG~~~G~d  245 (316)
                      .+.++++|+..   ...++.+++.+|..  .|              .+..+.++.+.+ .++..+++|-.|.+... |.=
T Consensus       189 ~d~~lm~El~~l~~~~~pdevlLVvda~--~g--------------q~av~~a~~F~~~l~i~gvIlTKlD~~a~~-G~~  251 (437)
T PRK00771        189 LEEDLIEEMKEIKEAVKPDEVLLVIDAT--IG--------------QQAKNQAKAFHEAVGIGGIIITKLDGTAKG-GGA  251 (437)
T ss_pred             chHHHHHHHHHHHHHhcccceeEEEecc--cc--------------HHHHHHHHHHHhcCCCCEEEEecccCCCcc-cHH
Confidence            12556555543   34456677777763  11              245567777664 67889999988765332 221


Q ss_pred             HHHHHHHhhcCCCcEEEEeCCCCHHHH
Q 021156          246 DELVALLGKYSPIPVTYAGGVTTMADL  272 (316)
Q Consensus       246 ~eli~~l~~~~~iPVIasGGI~s~eDi  272 (316)
                          -.+...+++||.+-|-=..++|+
T Consensus       252 ----ls~~~~~~~Pi~fig~Ge~v~Dl  274 (437)
T PRK00771        252 ----LSAVAETGAPIKFIGTGEKIDDL  274 (437)
T ss_pred             ----HHHHHHHCcCEEEEecCCCcccC
Confidence                23344567888776653333444

>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2

Probab=91.27  E-value=0.48  Score=41.20  Aligned_cols=65  Identities=28%  Similarity=0.281  Sum_probs=45.1

Q ss_pred             HHHHHHHHcCCCcceEEEecCCcccHHHHHHHHH---h--CCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeec
Q 021156           97 EFANLYKEDGLTGGHAIMLGADPLSKAAAIEALH---A--YPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        97 e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~---~--~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      +.++...++|++   ++-||.-  +.+.+.++++   .  ..+.+.+.|||+.+.+.+|.+.|+|.+.+|+..+.
T Consensus        91 ee~~ea~~~g~d---~I~lD~~--~~~~~~~~v~~l~~~~~~v~ie~SGGI~~~ni~~ya~~gvD~isvg~~~~~  160 (169)
T PF01729_consen   91 EEAEEALEAGAD---IIMLDNM--SPEDLKEAVEELRELNPRVKIEASGGITLENIAEYAKTGVDVISVGSLTHS  160 (169)
T ss_dssp             HHHHHHHHTT-S---EEEEES---CHHHHHHHHHHHHHHTTTSEEEEESSSSTTTHHHHHHTT-SEEEECHHHHS
T ss_pred             HHHHHHHHhCCC---EEEecCc--CHHHHHHHHHHHhhcCCcEEEEEECCCCHHHHHHHHhcCCCEEEcChhhcC
Confidence            345555566644   6777753  2344444443   2  35889999999999999999999999999987654

4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....

>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain

Probab=91.27  E-value=1.8  Score=36.00  Aligned_cols=83  Identities=19%  Similarity=0.207  Sum_probs=53.5

Q ss_pred             CHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhc-C-CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          214 YLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKY-S-PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       214 ~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~-~-~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      ++.++++.+.+.+++.+.+...+  ++....-.++++.+++. . ++++++ ||.-..+|..++.++|  +++++     
T Consensus        41 s~e~~v~aa~e~~adii~iSsl~--~~~~~~~~~~~~~L~~~g~~~i~viv-GG~~~~~~~~~l~~~G--vd~~~-----  110 (132)
T TIGR00640        41 TPEEIARQAVEADVHVVGVSSLA--GGHLTLVPALRKELDKLGRPDILVVV-GGVIPPQDFDELKEMG--VAEIF-----  110 (132)
T ss_pred             CHHHHHHHHHHcCCCEEEEcCch--hhhHHHHHHHHHHHHhcCCCCCEEEE-eCCCChHhHHHHHHCC--CCEEE-----
Confidence            57889999999999988765544  33322334566667653 3 455555 5555678899999998  75543     


Q ss_pred             hhccCcccHHHHHHHHHh
Q 021156          292 DIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       292 ~~~~g~~~~~~~~~~~~~  309 (316)
                        +.|. ++.++++++.+
T Consensus       111 --~~gt-~~~~i~~~l~~  125 (132)
T TIGR00640       111 --GPGT-PIPESAIFLLK  125 (132)
T ss_pred             --CCCC-CHHHHHHHHHH
Confidence              2333 56666665554

Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.

>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase

Probab=91.25  E-value=0.56  Score=45.82  Aligned_cols=70  Identities=20%  Similarity=0.186  Sum_probs=47.7

Q ss_pred             HHHHHHHHcCCCcceEEEecCCc-----ccHHHHHHHHHhC--CCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeeec
Q 021156           97 EFANLYKEDGLTGGHAIMLGADP-----LSKAAAIEALHAY--PGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        97 e~a~~~~~~G~~~l~lvDLda~~-----~~~~~i~~~v~~~--~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      +-|+...+.|++.+.+-.-.+..     .....+.++.+.+  .+||++.||||. .|+-+.+..||+.|-+|..++.
T Consensus       236 ~dA~~a~~~Gvd~I~VsnhGGrqld~~~~t~~~L~ei~~av~~~~~vi~dGGIr~G~Dv~KALALGA~aV~iGr~~l~  313 (367)
T PLN02493        236 EDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVF  313 (367)
T ss_pred             HHHHHHHHcCCCEEEECCCCCCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHH
Confidence            46677778888865333322221     1122233333433  489999999995 9999999999999999987763

>PRK06096 molybdenum transport protein ModD; Provisional

Probab=91.09  E-value=1.1  Score=42.24  Aligned_cols=66  Identities=20%  Similarity=0.157  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHh-----CCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeee
Q 021156           95 AAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHA-----YPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVF  165 (316)
Q Consensus        95 p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~-----~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~  165 (316)
                      .++.|+...++|++   ++-||.-  ..+.+.++++.     -.+.+.+-|||+.+.+..|...|+|.+++|+..+
T Consensus       198 tleqa~ea~~agaD---iI~LDn~--~~e~l~~av~~~~~~~~~~~leaSGGI~~~ni~~yA~tGvD~Is~gal~~  268 (284)
T PRK06096        198 TPKEAIAALRAQPD---VLQLDKF--SPQQATEIAQIAPSLAPHCTLSLAGGINLNTLKNYADCGIRLFITSAPYY  268 (284)
T ss_pred             CHHHHHHHHHcCCC---EEEECCC--CHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHhcCCCEEEECcccc
Confidence            44577777788876   5566632  33444444432     3578999999999999999999999999998743

>TIGR02814 pfaD_fam PfaD family protein

Probab=91.07  E-value=1.4  Score=44.13  Aligned_cols=49  Identities=18%  Similarity=0.243  Sum_probs=38.3

Q ss_pred             CCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCC-CHHHHHHHHHH
Q 021156          133 PGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQM-DLERLKDLVRV  181 (316)
Q Consensus       133 ~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~-~~eli~ei~~~  181 (316)
                      ++||...|||- .+++..+|..||+.|.+||.++-..|. ..+..++....
T Consensus       224 ~VpViAAGGI~t~~~vaAAlaLGAdgV~~GT~flat~Esgas~~~K~~L~~  274 (444)
T TIGR02814       224 PIRVGAAGGIGTPEAAAAAFMLGADFIVTGSVNQCTVEAGTSDNVKKLLAK  274 (444)
T ss_pred             CceEEEeCCCCCHHHHHHHHHcCCcEEEeccHHHhCccccCCHHHHHHHHh
Confidence            68999999997 599999999999999999998865321 23455565543

The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	316
2agk_A	260	Structure Of S. Cerevisiae His6 Protein Length = 26		6e-52
4gj1_A	243	Crystal Structure Of 1-(5-Phosphoribosyl)-5-[(5-Pho		2e-08
1thf_D	253	Cyclase Subunit Of Imidazoleglycerolphosphate Synth		7e-08
2a0n_A	265	Crystal Structure Of Imidazole Glycerol Phosphate S		1e-07
2wjz_A	253	Crystal Structure Of (Hish) K181a Y138a Mutant Of I		1e-07
1vh7_A	265	Crystal Structure Of A Cyclase Subunit Of Imidazolg		2e-07
1gpw_A	253	Structural Evidence For Ammonia Tunneling Across Th		4e-07
4ewn_D	253	Structure Of Hisf-D130v+d176v With Bound Rcdrp Leng		5e-07
3og3_A	251	Crystal Structure Of An Artificial Thermostable (Ba		3e-06
2w6r_A	266	Crystal Structure Of An Artificial (Ba)8-Barrel Pro		5e-06
2lle_A	234	Computational Design Of An Eight-Stranded (BetaALPH		1e-05
3tdn_B	247	Computationally Designed Two-Fold Symmetric Tim-Bar		2e-05
3cwo_X	237	A BetaALPHA-Barrel Built By The Combination Of Frag		2e-05
2rkx_A	255	The 3d Structure Of Chain D, Cyclase Subunit Of Imi		4e-05
1h5y_A	253	Hisf Protein From Pyrobaculum Aerophilum Length = 2		9e-05
3iio_A	262	Evolutionary Optimization Of Computationally Design		3e-04
3tdm_A	126	Computationally Designed Tim-Barrel Protein, Halffl		5e-04
3iip_A	256	Evolutionary Optimization Of Computationally Design		6e-04

>pdb|2AGK|A Chain A, Structure Of S. Cerevisiae His6 Protein Length = 260

Iteration: 1
 Score =  201 bits (510), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 115/264 (43%), Positives = 163/264 (61%), Gaps = 12/264 (4%)
Query: 54  VRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAI 113
            +F  CID+H G+VKQIVG TL   K+D  K  TNF S   ++ +A LYK+  + G H I
Sbjct: 1   TKFIGCIDLHNGEVKQIVGGTLTSKKEDVPK--TNFVSQHPSSYYAKLYKDRDVQGCHVI 58
Query: 114 MLGADPLSKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN-NGQMDL 172
            LG  P +  AA EAL   P  LQVGGGIN  N L ++ + A+ VIVTS++F   G   L
Sbjct: 59  KLG--PNNDDAAREALQESPQFLQVGGGINDTNCLEWL-KWASKVIVTSWLFTKEGHFQL 115
Query: 173 ERLKDLVRVVGKQRLVLDLSCRK-KDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFL 231
           +RL+ L  + GK R+V+DLSCRK +DG++ +  ++WQ  +D+ L+      L  Y +EFL
Sbjct: 116 KRLERLTELCGKDRIVVDLSCRKTQDGRWIVAMNKWQTLTDLELNADTFRELRKYTNEFL 175
Query: 232 VHGVDVEGKKLGIDDELVALLGK----YSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTV 287
           +H  DVEG   GID+ LV+ L +    Y  + + YAGG  ++ DL+ +     G+VD+T 
Sbjct: 176 IHAADVEGLCGGIDELLVSKLFEWTKDYDDLKIVYAGGAKSVDDLKLVDELSHGKVDLTF 235
Query: 288 GSALDIFGGNLA-YKDVVAWHAQQ 310
           GS+LDIFGGNL  ++D   W+ +Q
Sbjct: 236 GSSLDIFGGNLVKFEDCCRWNEKQ 259

>pdb|4GJ1|A Chain A, Crystal Structure Of 1-(5-Phosphoribosyl)-5-[(5-Phosphoribosylamino) Methylideneamino] Imidazole-4-Carboxamide Isomerase (Hisa) Length = 243

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 111/240 (46%), Gaps = 24/240 (10%)
Query: 58  PCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNF-ESDKSAAEFANLYKEDGLTGGHAIMLG 116
           P +D+  G+V ++V    +  K      +  F E +K+ A+  +L     LTG       
Sbjct: 6   PALDLIDGEVVRLVKGDYEQKKVYKYNPLKKFKEYEKAGAKELHLVD---LTGAK----- 57
Query: 117 ADPLSKA-AAIEAL-HAYPGGLQVGGGINSDNSL-SYIEEGATHVIVTSYVFNNGQMDLE 173
            DP  +  A IE L       LQVGGGI S   + + ++ G   V++ S    +  + LE
Sbjct: 58  -DPSKRQFALIEKLAKEVSVNLQVGGGIRSKEEVKALLDCGVKRVVIGSXAIKDATLCLE 116
Query: 174 RLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYA-DEFLV 232
            LK+     G + +VL L    K+  Y +  + WQ+ SD  L E VLDF ++      L 
Sbjct: 117 ILKEF----GSEAIVLALDTILKE-DYVVAVNAWQEASDKKLXE-VLDFYSNKGLKHILC 170
Query: 233 HGVDVEGKKLGIDDELVALLGKYSP-IPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL 291
             +  +G   G++  L  L+ +  P I +  +GGV ++ DLE +K    G   V VG AL
Sbjct: 171 TDISKDGTXQGVNVRLYKLIHEIFPNICIQASGGVASLKDLENLKGICSG---VIVGKAL 227

>pdb|1THF|D Chain D, Cyclase Subunit Of Imidazoleglycerolphosphate Synthase From Thermotoga Maritima Length = 253

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 95/223 (42%), Gaps = 22/223 (9%)
Query: 52  CAVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGH 111
            A R   C+D+  G+V  + GS  ++ +D G              E    Y E G+    
Sbjct: 2   LAKRIIACLDVKDGRV--VKGSNFENLRDSG-----------DPVELGKFYSEIGIDELV 48
Query: 112 AIMLGADPLSKAAAIEALHAYPGGL----QVGGGINSDNSLS-YIEEGATHVIVTSYVFN 166
            + + A    +   +E +      +     VGGGI+   + S  I  GA  V + +    
Sbjct: 49  FLDITASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINTAAVE 108
Query: 167 NGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASY 226
           N  +    +  + +  G Q +V+ +  ++ DG++ + T   +K + + L + V++     
Sbjct: 109 NPSL----ITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRG 164
Query: 227 ADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTM 269
           A E L+  +D +G K G D E++  +   + +P+  +GG   M
Sbjct: 165 AGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKM 207

>pdb|2A0N|A Chain A, Crystal Structure Of Imidazole Glycerol Phosphate Synthase Subunit Hisf (ec 4.1.3.-) (tm1036) From Thermotoga Maritima At 1.64 A Resolution Length = 265

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/223 (21%), Positives = 95/223 (42%), Gaps = 22/223 (9%)
Query: 52  CAVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGH 111
            A R   C+D+  G+V  + G+  ++ +D G              E    Y E G+    
Sbjct: 14  LAKRIIACLDVKDGRV--VKGTNFENLRDSG-----------DPVELGKFYSEIGIDELV 60
Query: 112 AIMLGADPLSKAAAIEALHAYPGGL----QVGGGINSDNSLS-YIEEGATHVIVTSYVFN 166
            + + A    +   +E +      +     VGGGI+   + S  I  GA  V + +    
Sbjct: 61  FLDITASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINTAAVE 120
Query: 167 NGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASY 226
           N  +    +  + +  G Q +V+ +  ++ DG++ + T   +K + + L + V++     
Sbjct: 121 NPSL----ITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRG 176
Query: 227 ADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTM 269
           A E L+  +D +G K G D E++  +   + +P+  +GG   M
Sbjct: 177 AGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKM 219

>pdb|2WJZ|A Chain A, Crystal Structure Of (Hish) K181a Y138a Mutant Of Imidazoleglycerolphosphate Synthase (Hish Hisf) Which Displays Constitutive Glutaminase Activity Length = 253

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/223 (21%), Positives = 95/223 (42%), Gaps = 22/223 (9%)
Query: 52  CAVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGH 111
            A R   C+D+  G+V  + G+  ++ +D G              E    Y E G+    
Sbjct: 2   LAKRIIACLDVKDGRV--VKGTNFENLRDSG-----------DPVELGKFYSEIGIDELV 48
Query: 112 AIMLGADPLSKAAAIEALHAYPGGL----QVGGGINSDNSLS-YIEEGATHVIVTSYVFN 166
            + + A    +   +E +      +     VGGGI+   + S  I  GA  V + +    
Sbjct: 49  FLDITASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINTAAVE 108
Query: 167 NGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASY 226
           N  +    +  + +  G Q +V+ +  ++ DG++ + T   +K + + L + V++     
Sbjct: 109 NPSL----ITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRG 164
Query: 227 ADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTM 269
           A E L+  +D +G K G D E++  +   + +P+  +GG   M
Sbjct: 165 AGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKM 207

>pdb|1VH7|A Chain A, Crystal Structure Of A Cyclase Subunit Of Imidazolglycerolphosphate Synthase Length = 265

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/223 (21%), Positives = 95/223 (42%), Gaps = 22/223 (9%)
Query: 52  CAVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGH 111
            A R   C+D+  G+V  + G+  ++ +D G              E    Y E G+    
Sbjct: 4   LAKRIIACLDVKDGRV--VKGTNFENLRDSG-----------DPVELGKFYSEIGIDELV 50
Query: 112 AIMLGADPLSKAAAIEALHAYPGGL----QVGGGINSDNSLS-YIEEGATHVIVTSYVFN 166
            + + A    +   +E +      +     VGGGI+   + S  I  GA  V + +    
Sbjct: 51  FLDITASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINTAAVE 110
Query: 167 NGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASY 226
           N  +    +  + +  G Q +V+ +  ++ DG++ + T   +K + + L + V++     
Sbjct: 111 NPSL----ITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRG 166
Query: 227 ADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTM 269
           A E L+  +D +G K G D E++  +   + +P+  +GG   M
Sbjct: 167 AGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKM 209

>pdb|1GPW|A Chain A, Structural Evidence For Ammonia Tunneling Across The (BetaALPHA)8 BARREL OF THE IMIDAZOLE GLYCEROL PHOSPHATE Synthase Bienzyme Complex. Length = 253

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/223 (21%), Positives = 95/223 (42%), Gaps = 22/223 (9%)
Query: 52  CAVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGH 111
            A R   C+++  G+V  + G+  ++ +D G              E    Y E G+    
Sbjct: 2   LAKRIIACLNVKDGRV--VKGTNFENLRDSG-----------DPVELGKFYSEIGIDELV 48
Query: 112 AIMLGADPLSKAAAIEALHAYPGGL----QVGGGINSDNSLS-YIEEGATHVIVTSYVFN 166
            + + A    +   +E +      +     VGGGI+   + S  I  GA  V + +    
Sbjct: 49  FLDITASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINTAAVE 108
Query: 167 NGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASY 226
           N  +    +  + +  G Q +V+ +  ++ DG++ + T   +K + + L + V++     
Sbjct: 109 NPSL----ITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRG 164
Query: 227 ADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTM 269
           A E L+  +D +G K G D E++  +   + +P+  +GG   M
Sbjct: 165 AGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKM 207

>pdb|4EWN|D Chain D, Structure Of Hisf-D130v+d176v With Bound Rcdrp Length = 253

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/223 (21%), Positives = 94/223 (42%), Gaps = 22/223 (9%)
Query: 52  CAVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGH 111
            A R   C+D+  G+V  + G+  ++ +D G              E    Y E G+    
Sbjct: 2   LAKRIIACLDVKDGRV--VKGTNFENLRDSG-----------DPVELGKFYSEIGIDELV 48
Query: 112 AIMLGADPLSKAAAIEALHAYPGGL----QVGGGINSDNSLS-YIEEGATHVIVTSYVFN 166
            + + A    +   +E +      +     VGGGI+   + S  I  GA  V + +    
Sbjct: 49  FLDITASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINTAAVE 108
Query: 167 NGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASY 226
           N  +    +  + +  G Q +V+ +  ++ DG++ + T   +K + + L + V++     
Sbjct: 109 NPSL----ITQIAQTFGSQAVVVAIVAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRG 164
Query: 227 ADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTM 269
           A E L+  +D  G K G D E++  +   + +P+  +GG   M
Sbjct: 165 AGEILLTSIDRVGTKSGYDTEMIRFVRPLTTLPIIASGGAGKM 207

>pdb|3OG3|A Chain A, Crystal Structure Of An Artificial Thermostable (Ba)8-Barrel Protein From Identical Half Barrels Length = 251

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/151 (21%), Positives = 69/151 (45%), Gaps = 4/151 (2%)
Query: 139 GGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDG 198
           GG    ++ L     GA  V + +    N  +    +  + +  G Q +V+ +  ++ DG
Sbjct: 81  GGAGKMEHFLEAFLAGADKVSINTAAVENPSL----ITQIAQTFGSQAVVVAIDAKRVDG 136
Query: 199 KYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPI 258
           ++ + T   +K + + L + V++     A E L+  +D +G K G D E++  +   + +
Sbjct: 137 EFMVFTHSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTL 196
Query: 259 PVTYAGGVTTMADLEKIKVAGIGRVDVTVGS 289
           P+  +GG   M    +  +AG  +V +   +
Sbjct: 197 PIIASGGAGKMEHFLEAFLAGADKVSINTAA 227

>pdb|2W6R|A Chain A, Crystal Structure Of An Artificial (Ba)8-Barrel Protein Designed From Identical Half Barrels Length = 266

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 67/133 (50%), Gaps = 3/133 (2%)
Query: 139 GGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGK--QRLVLDLSCRKK 196
           GG    ++ L     GA   +  S VF+  ++D+  LK+ ++  G   Q +V+ +  ++ 
Sbjct: 81  GGAGKMEHFLEAFLAGADKALAAS-VFHFREIDMRELKEYLKKHGGSGQAVVVAIDAKRV 139
Query: 197 DGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYS 256
           DG++ + T   +K + + L + V++     A E L+  +D +G K G D E++  +   +
Sbjct: 140 DGEFMVFTHSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLT 199
Query: 257 PIPVTYAGGVTTM 269
            +P+  +GG   M
Sbjct: 200 TLPIIASGGAGKM 212

>pdb|2LLE|A Chain A, Computational Design Of An Eight-Stranded (BetaALPHA)-Barrel From Fragments Of Different Folds Length = 234

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 4/122 (3%)
Query: 148 LSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRW 207
           +  I+ GA   IV +    N  +    +  L +  G Q +V+ +  ++ DG++ + T   
Sbjct: 69  IEAIKAGAKGFIVNTAAVENPSL----ITQLAQTFGSQAVVVAIDAKRVDGEFMVFTYSG 124
Query: 208 QKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVT 267
           +K + + L + V++     A E L+  +D +G K G D E++  +   + +P+  +GG  
Sbjct: 125 KKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAG 184
Query: 268 TM 269
            M
Sbjct: 185 KM 186

>pdb|3TDN|B Chain B, Computationally Designed Two-Fold Symmetric Tim-Barrel Protein, Flr Length = 247

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/131 (22%), Positives = 61/131 (46%), Gaps = 4/131 (3%)
Query: 139 GGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDG 198
           GG    ++ L     GA  V + +    N  +    +  + +  G Q +V+ +  ++ DG
Sbjct: 86  GGAGKMEHFLEAFLRGADKVSINTAAVENPSL----ITQIAQTFGSQAVVVAIDAKRVDG 141
Query: 199 KYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPI 258
           ++ + T   +K + + L + V++     A E L+  +D +G K G D E++  +   + +
Sbjct: 142 EFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTL 201
Query: 259 PVTYAGGVTTM 269
           P+  +GG   M
Sbjct: 202 PIIASGGAGKM 212

>pdb|3CWO|X Chain X, A BetaALPHA-Barrel Built By The Combination Of Fragments From Different Folds Length = 237

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/122 (22%), Positives = 59/122 (48%), Gaps = 4/122 (3%)
Query: 148 LSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRW 207
           +  I+ GA   IV +    N  +    +  + +  G Q +V+ +  ++ DG++ + T   
Sbjct: 69  IEAIKAGAKDFIVNTAAVENPSL----ITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSG 124
Query: 208 QKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVT 267
           +K + + L + V++     A E L+  +D +G K G D E++  +   + +P+  +GG  
Sbjct: 125 KKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAG 184
Query: 268 TM 269
            M
Sbjct: 185 KM 186

>pdb|2RKX|A Chain A, The 3d Structure Of Chain D, Cyclase Subunit Of Imidazoleglycerol_evolvedcerolphosphate Synthase Length = 255

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 68/145 (46%), Gaps = 5/145 (3%)
Query: 136 LQVGGGINSDNSLS-YIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCR 194
             VGGGI+   + S  I  GA  V + +    N  +    +  + +  G Q +V+ ++ +
Sbjct: 77  FTVGGGIHDFETASELILRGADKVEINTAAVENPSL----ITQIAQTFGSQAVVVYIAAK 132
Query: 195 KKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGK 254
           + DG++ + T   +K + + L + V++     A E ++  +D  G K G D E++  +  
Sbjct: 133 RVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEIVLGSIDRLGTKSGYDTEMIRFVRP 192
Query: 255 YSPIPVTYAGGVTTMADLEKIKVAG 279
            + +P+   GG   M    +  +AG
Sbjct: 193 LTTLPIIAHGGAGKMEHFLEAFLAG 217

>pdb|1H5Y|A Chain A, Hisf Protein From Pyrobaculum Aerophilum Length = 253

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 91/218 (41%), Gaps = 20/218 (9%)
Query: 53  AVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHA 112
           A+R  PC+DI  G    + G   Q  ++ G  +           E A  Y+E+G      
Sbjct: 4   ALRIIPCLDIDGGAKVVVKGVNFQGIREVGDPV-----------EMAVRYEEEGADEIAI 52
Query: 113 IMLGADPLSKAAAIEAL----HAYPGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFNN 167
           + + A P  +A  I+++     A    + VGGG+ S +++ +    GA  V V +    N
Sbjct: 53  LDITAAPEGRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSVNTAAVRN 112
Query: 168 GQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYA 227
            Q+    +  L R  G Q  V+ +  +     Y +     ++ + +   +   +     A
Sbjct: 113 PQL----VALLAREFGSQSTVVAIDAKWNGEYYEVYVKGGREATGLDAVKWAKEVEELGA 168
Query: 228 DEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGG 265
            E L+  +D +G  LG D EL+  +     IPV  +GG
Sbjct: 169 GEILLTSIDRDGTGLGYDVELIRRVADSVRIPVIASGG 206

>pdb|3IIO|A Chain A, Evolutionary Optimization Of Computationally Designed Enzymes: Kemp Eliminases Of The Ke07 Series Length = 262

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 67/145 (46%), Gaps = 5/145 (3%)
Query: 136 LQVGGGINSDNSLS-YIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCR 194
             VGGGI+   + S  I  GA  V + +    N  +    +  + +  G Q +V+ ++ +
Sbjct: 78  FTVGGGIHDFETASELILRGADKVEINTAAVENPSL----ITQIAQTFGSQAVVVYIAAK 133
Query: 195 KKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGK 254
           + DG++ + T   +K + + L + V++     A E ++  +D  G K G D E++  +  
Sbjct: 134 RVDGEFMVFTYSGEKNTGILLRDWVVEVEKRGAGEIVLGSIDRLGTKSGYDTEMIRFVRP 193
Query: 255 YSPIPVTYAGGVTTMADLEKIKVAG 279
            + +P+    G   M    +  +AG
Sbjct: 194 LTTLPIIAHRGAGKMEHFLEAFLAG 218

>pdb|3TDM|A Chain A, Computationally Designed Tim-Barrel Protein, Halfflr Length = 126

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/101 (22%), Positives = 51/101 (50%)
Query: 185 QRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGI 244
           Q +V+ +  ++ DG++ + T   +K + + L + V++     A E L+  +D +G K G 
Sbjct: 7   QAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGY 66
Query: 245 DDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDV 285
           D E++  +   + +P+  +GG   M    +  + G  +V +
Sbjct: 67  DTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLRGADKVSI 107

>pdb|3IIP|A Chain A, Evolutionary Optimization Of Computationally Designed Enzymes: Kemp Eliminases Of The Ke07 Series Length = 256

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 66/145 (45%), Gaps = 5/145 (3%)
Query: 136 LQVGGGINSDNSLS-YIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCR 194
             VGGGI+   + S  I  GA  V + +    N  +    +  + +  G Q +V+ ++ +
Sbjct: 78  FTVGGGIHDFETASELILRGADKVEINTAAVENPSL----ITQIAQTFGSQAVVVYIAAK 133
Query: 195 KKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGK 254
           + DG++ + T    K + + L + V++     A E ++  +D  G K G D E++  +  
Sbjct: 134 RVDGEFMVFTYSGTKNTGILLRDWVVEVEKRGAGEIVLGSIDRLGTKSGYDTEMIRFVRP 193
Query: 255 YSPIPVTYAGGVTTMADLEKIKVAG 279
            + +P+    G   M    +  +AG
Sbjct: 194 LTTLPIIAHRGAGKMEHFLEAFLAG 218

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	316
2agk_A	260	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	1e-89
1qo2_A	241	Molecule: N-((5-phosphoribosyl)-formimino)-5-amino	3e-14
2y88_A	244	Phosphoribosyl isomerase A; aromatic amino acid bi	4e-14
1vzw_A	244	Phosphoribosyl isomerase A; histidine biosynthesis	6e-13

>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae} Length = 260

 Score =  267 bits (684), Expect = 1e-89
 Identities = 114/263 (43%), Positives = 161/263 (61%), Gaps = 12/263 (4%)

Query: 55  RFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIM 114
           +F  CID+H G+VKQIVG TL   K+D  K  TNF S   ++ +A LYK+  + G H I 
Sbjct: 2   KFIGCIDLHNGEVKQIVGGTLTSKKEDVPK--TNFVSQHPSSYYAKLYKDRDVQGCHVIK 59

Query: 115 LGADPLSKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVF-NNGQMDLE 173
           L   P +  AA EAL   P  LQVGGGIN  N L ++ + A+ VIVTS++F   G   L+
Sbjct: 60  L--GPNNDDAAREALQESPQFLQVGGGINDTNCLEWL-KWASKVIVTSWLFTKEGHFQLK 116

Query: 174 RLKDLVRVVGKQRLVLDLSCRK-KDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLV 232
           RL+ L  + GK R+V+DLSCRK +DG++ +  ++WQ  +D+ L+      L  Y +EFL+
Sbjct: 117 RLERLTELCGKDRIVVDLSCRKTQDGRWIVAMNKWQTLTDLELNADTFRELRKYTNEFLI 176

Query: 233 HGVDVEGKKLGIDDELVALLG----KYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVG 288
           H  DVEG   GID+ LV+ L      Y  + + YAGG  ++ DL+ +     G+VD+T G
Sbjct: 177 HAADVEGLCGGIDELLVSKLFEWTKDYDDLKIVYAGGAKSVDDLKLVDELSHGKVDLTFG 236

Query: 289 SALDIFGGNLA-YKDVVAWHAQQ 310
           S+LDIFGGNL  ++D   W+ +Q
Sbjct: 237 SSLDIFGGNLVKFEDCCRWNEKQ 259

>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A Length = 241

 Score = 69.9 bits (172), Expect = 3e-14
 Identities = 31/176 (17%), Positives = 61/176 (34%), Gaps = 19/176 (10%)

Query: 123 AAAIEALHAYPGGLQVGGGINSDNSL-SYIEEGATHVIVTSYVFNNGQMDLERLKDLVRV 181
              +E L  +   +Q+GGGI S +      + G    IV+S V  +           ++ 
Sbjct: 63  LPVLEKLSEFAEHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLED--------PSFLKS 114

Query: 182 VGK--QRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEG 239
           + +     V  L  R   G+  +    W    ++     +        +E +   ++ +G
Sbjct: 115 LREIDVEPVFSLDTR--GGR--VAFKGWLAEEEIDPVSLLKRLKEYGLEEIVHTEIEKDG 170

Query: 240 KKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVD----VTVGSAL 291
                D  L   +   + + V  AGG+++   L+  +            V VG A 
Sbjct: 171 TLQEHDFSLTKKIAIEAEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVGRAF 226

>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* Length = 244

 Score = 69.5 bits (171), Expect = 4e-14
 Identities = 42/201 (20%), Positives = 81/201 (40%), Gaps = 11/201 (5%)

Query: 96  AEFANLYKEDGLTGGHAIML-GA-DPLSKAAAIEA-LHAYPGGLQVGGGINSDNSL-SYI 151
            + A  ++ DG    H + L  A    S    +   +      +++ GGI  D SL + +
Sbjct: 34  VDAALGWQRDGAEWIHLVDLDAAFGRGSNHELLAEVVGKLDVQVELSGGIRDDESLAAAL 93

Query: 152 EEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFS 211
             G   V V +    N     +    ++   G  ++ + L  +  DG++ +    W+   
Sbjct: 94  ATGCARVNVGTAALEN----PQWCARVIGEHGD-QVAVGLDVQIIDGEHRLRGRGWET-D 147

Query: 212 DVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMAD 271
              L + +    +     F+V  +  +G   G + +L+A +   +  PV  +GGV+++ D
Sbjct: 148 GGDLWDVLERLDSEGCSRFVVTDITKDGTLGGPNLDLLAGVADRTDAPVIASGGVSSLDD 207

Query: 272 LEKIKVAGIGRVD-VTVGSAL 291
           L  I       V+   VG AL
Sbjct: 208 LRAIATLTHRGVEGAIVGKAL 228

>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A Length = 244

 Score = 66.4 bits (163), Expect = 6e-13
 Identities = 31/157 (19%), Positives = 62/157 (39%), Gaps = 12/157 (7%)

Query: 137 QVGGGINSDNSLS-YIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRK 195
           ++ GGI  D++L+  +  G T V + +          E +  ++   G  ++ + L  R 
Sbjct: 79  ELSGGIRDDDTLAAALATGCTRVNLGTAALET----PEWVAKVIAEHGD-KIAVGLDVR- 132

Query: 196 KDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKY 255
                 +    W +      +  +          ++V  +  +G   G + EL+  +   
Sbjct: 133 -GTT--LRGRGWTRDGGDLYET-LDRLNKEGCARYVVTDIAKDGTLQGPNLELLKNVCAA 188

Query: 256 SPIPVTYAGGVTTMADLEKIKVAGIGRVD-VTVGSAL 291
           +  PV  +GGV+++ DL  I       V+   VG AL
Sbjct: 189 TDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKAL 225

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	316
4gj1_A	243	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	100.0
2agk_A	260	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	100.0
1jvn_A	555	Glutamine, bifunctional histidine biosynthesis pro	100.0
1vzw_A	244	Phosphoribosyl isomerase A; histidine biosynthesis	100.0
2y88_A	244	Phosphoribosyl isomerase A; aromatic amino acid bi	100.0
1qo2_A	241	Molecule: N-((5-phosphoribosyl)-formimino)-5-amino	100.0
1thf_D	253	HISF protein; thermophIle, TIM-barrel, histidine b	100.0
1ka9_F	252	Imidazole glycerol phosphtate synthase; riken stru	100.0
2w6r_A	266	Imidazole glycerol phosphate synthase subunit HISF	100.0
3tdn_A	247	FLR symmetric alpha-beta TIM barrel; symmetric sup	100.0
1h5y_A	253	HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py	100.0
3cwo_X	237	Beta/alpha-barrel protein based on 1THF and 1TMY;	99.84
3tdn_A	247	FLR symmetric alpha-beta TIM barrel; symmetric sup	99.76
3vk5_A	286	MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {S	99.76
3igs_A	232	N-acetylmannosamine-6-phosphate 2-epimerase 2; ene	99.73
1vc4_A	254	Indole-3-glycerol phosphate synthase; lyase, trypt	99.69
3qja_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	99.67
3q58_A	229	N-acetylmannosamine-6-phosphate 2-epimerase; TIM b	99.66
3tsm_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	99.65
1y0e_A	223	Putative N-acetylmannosamine-6-phosphate 2-epimer;	99.59
1geq_A	248	Tryptophan synthase alpha-subunit; hyperthermophIl	99.57
2w6r_A	266	Imidazole glycerol phosphate synthase subunit HISF	99.54
4adt_A	297	Pyridoxine biosynthetic enzyme PDX1 homologue, PU;	99.51
1yxy_A	234	Putative N-acetylmannosamine-6-phosphate 2-epimer;	99.5
3vzx_A	228	Heptaprenylglyceryl phosphate synthase; biosynthes	99.48
2fli_A	220	Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr	99.43
2nv1_A	305	Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b	99.39
3b0p_A	350	TRNA-dihydrouridine synthase; TIM barrel, oxidored	99.39
2f6u_A	234	GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy	99.36
2v82_A	212	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l	99.35
1qo2_A	241	Molecule: N-((5-phosphoribosyl)-formimino)-5-amino	99.35
4gj1_A	243	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	99.33
2zbt_A	297	Pyridoxal biosynthesis lyase PDXS; pyridoxine bios	99.33
2tps_A	227	Protein (thiamin phosphate synthase); thiamin bios	99.28
1viz_A	240	PCRB protein homolog; structural genomics, unknown	99.26
1xi3_A	215	Thiamine phosphate pyrophosphorylase; structural g	99.26
1vhn_A	318	Putative flavin oxidoreducatase; structural genomi	99.25
1ka9_F	252	Imidazole glycerol phosphtate synthase; riken stru	99.22
1thf_D	253	HISF protein; thermophIle, TIM-barrel, histidine b	99.2
3w01_A	235	Heptaprenylglyceryl phosphate synthase; biosynthes	99.14
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.14
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.12
3f4w_A	211	Putative hexulose 6 phosphate synthase; humps, mal	99.11
1ep3_A	311	Dihydroorotate dehydrogenase B (PYRD subunit); het	99.06
3khj_A	361	Inosine-5-monophosphate dehydrogenase; enzyme-inhi	99.02
3bo9_A	326	Putative nitroalkan dioxygenase; TM0800, structura	99.0
3vk5_A	286	MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {S	98.96
2agk_A	260	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	98.93
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	98.93
4fo4_A	366	Inosine 5'-monophosphate dehydrogenase; structural	98.93
3o07_A	291	Pyridoxine biosynthesis protein SNZ1; (beta/alpha)	98.93
1qop_A	268	Tryptophan synthase alpha chain; lyase, carbon-oxy	98.92
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	98.92
1h1y_A	228	D-ribulose-5-phosphate 3-epimerase; oxidative pent	98.91
1h5y_A	253	HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py	98.89
3zwt_A	367	Dihydroorotate dehydrogenase (quinone), mitochond;	98.89
2gjl_A	328	Hypothetical protein PA1024; 2-nitropropane dioxyg	98.89
2y88_A	244	Phosphoribosyl isomerase A; aromatic amino acid bi	98.87
1jub_A	311	Dihydroorotate dehydrogenase A; homodimer, alpha-b	98.86
1vzw_A	244	Phosphoribosyl isomerase A; histidine biosynthesis	98.85
3ffs_A	400	Inosine-5-monophosphate dehydrogenase; beta-alpha	98.83
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	98.83
1ypf_A	336	GMP reductase; GUAC, purines, pyrimidines, nucleos	98.83
1i4n_A	251	Indole-3-glycerol phosphate synthase; thermostable	98.82
2z6i_A	332	Trans-2-enoyl-ACP reductase II; fatty acid synthes	98.81
1yad_A	221	Regulatory protein TENI; TIM barrel, transcription	98.8
3gr7_A	340	NADPH dehydrogenase; flavin, FMN, beta-alpha-barre	98.8
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	98.76
3vnd_A	267	TSA, tryptophan synthase alpha chain; psychrophili	98.75
2yzr_A	330	Pyridoxal biosynthesis lyase PDXS; redox protein,	98.74
1z41_A	338	YQJM, probable NADH-dependent flavin oxidoreductas	98.73
3oix_A	345	Putative dihydroorotate dehydrogenase; dihydrooro	98.72
2gou_A	365	Oxidoreductase, FMN-binding; OLD yeallow enzyme, f	98.71
1rd5_A	262	Tryptophan synthase alpha chain, chloroplast; hydr	98.71
1viz_A	240	PCRB protein homolog; structural genomics, unknown	98.71
1vyr_A	364	Pentaerythritol tetranitrate reductase; oxidoreduc	98.7
1rpx_A	230	Protein (ribulose-phosphate 3-epimerase); chloropl	98.7
2qjg_A	273	Putative aldolase MJ0400; beta-alpha barrel, lyase	98.69
2r14_A	377	Morphinone reductase; H-tunnelling, flavoprotein,	98.69
1wv2_A	265	Thiazole moeity, thiazole biosynthesis protein THI	98.67
3r2g_A	361	Inosine 5'-monophosphate dehydrogenase; structural	98.67
3hgj_A	349	Chromate reductase; TIM barrel, oxidoreductase; HE	98.66
4ef8_A	354	Dihydroorotate dehydrogenase; phenyl isothiocyanat	98.66
3o63_A	243	Probable thiamine-phosphate pyrophosphorylase; thi	98.65
1tqj_A	230	Ribulose-phosphate 3-epimerase; beta-alpha barrel	98.65
2ekc_A	262	AQ_1548, tryptophan synthase alpha chain; structur	98.63
2e6f_A	314	Dihydroorotate dehydrogenase; chagas disease, pyri	98.63
2htm_A	268	Thiazole biosynthesis protein THIG; thiamin biosyn	98.62
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	98.59
1eep_A	404	Inosine 5'-monophosphate dehydrogenase; alpha-beta	98.59
3l5l_A	363	Xenobiotic reductase A; TIM barrel, oxidoreductase	98.58
3i65_A	415	Dihydroorotate dehydrogenase homolog, mitochondria	98.57
2f6u_A	234	GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy	98.55
3ovp_A	228	Ribulose-phosphate 3-epimerase; iron binding, isom	98.55
1f76_A	336	Dihydroorotate dehydrogenase; monomer, alpha-beta-	98.53
3nav_A	271	Tryptophan synthase alpha chain; alpha subunit, st	98.53
1icp_A	376	OPR1, 12-oxophytodienoate reductase 1; beta-alpha-	98.51
4a29_A	258	Engineered retro-aldol enzyme RA95.0; de novo prot	98.51
2hsa_B	402	12-oxophytodienoate reductase 3; alpha beta 8 barr	98.51
3inp_A	246	D-ribulose-phosphate 3-epimerase; IDP02542, isomer	98.51
1pii_A	452	N-(5'phosphoribosyl)anthranilate isomerase; bifunc	98.5
1ujp_A	271	Tryptophan synthase alpha chain; riken structural	98.5
2yw3_A	207	4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox	98.5
1wa3_A	205	2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG,	98.49
3w01_A	235	Heptaprenylglyceryl phosphate synthase; biosynthes	98.49
1jvn_A	555	Glutamine, bifunctional histidine biosynthesis pro	98.46
3gka_A	361	N-ethylmaleimide reductase; decode biostructures,	98.46
3ajx_A	207	3-hexulose-6-phosphate synthase; HPS, OMPDC supraf	98.46
3kru_A	343	NADH:flavin oxidoreductase/NADH oxidase; homotetra	98.43
4ab4_A	362	Xenobiotic reductase B; oxidoreductase, OLD yellow	98.43
1vhc_A	224	Putative KHG/KDPG aldolase; structural genomics, u	98.42
1tv5_A	443	Dhodehase, dihydroorotate dehydrogenase homolog, m	98.41
3bw2_A	369	2-nitropropane dioxygenase; TIM barrel, oxidoreduc	98.39
3vzx_A	228	Heptaprenylglyceryl phosphate synthase; biosynthes	98.38
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	98.38
3ctl_A	231	D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p	98.37
3aty_A	379	Tcoye, prostaglandin F2A synthase; alpha/beta barr	98.36
1xm3_A	264	Thiazole biosynthesis protein THIG; structural gen	98.33
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.32
3tha_A	252	Tryptophan synthase alpha chain; structural genomi	98.29
3vkj_A	368	Isopentenyl-diphosphate delta-isomerase; type 2 is	98.27
1wbh_A	214	KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli}	98.26
4e38_A	232	Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho	98.25
1p0k_A	349	Isopentenyl-diphosphate delta-isomerase; terpene b	98.24
2nli_A	368	Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid	98.22
1gox_A	370	(S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu	98.22
1mxs_A	225	KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a	98.2
2qr6_A	393	IMP dehydrogenase/GMP reductase; NP_599840.1, G re	98.18
3cu2_A	237	Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib	98.18
2h6r_A	219	Triosephosphate isomerase; beta-alpha barrel; 2.30	98.17
3kts_A	192	Glycerol uptake operon antiterminator regulatory;	98.17
1p4c_A	380	L(+)-mandelate dehydrogenase; TIM barrel, hydroxy	98.16
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	98.16
3sgz_A	352	Hydroxyacid oxidase 2; flavoprotein, homology, INH	98.14
3l5a_A	419	NADH/flavin oxidoreductase/NADH oxidase; OLD yello	98.11
3gr7_A	340	NADPH dehydrogenase; flavin, FMN, beta-alpha-barre	98.1
3ceu_A	210	Thiamine phosphate pyrophosphorylase; TIM barrel-l	98.1
3iwp_A	287	Copper homeostasis protein CUTC homolog; conserved	98.09
1tqx_A	227	D-ribulose-5-phosphate 3-epimerase, putative; stru	98.09
3nl6_A	540	Thiamine biosynthetic bifunctional enzyme; thiamin	98.08
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.03
3lab_A	217	Putative KDPG (2-keto-3-deoxy-6-phosphogluconate)	97.98
1twd_A	256	Copper homeostasis protein CUTC; TIM-like protein,	97.97
2nzl_A	392	Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G	97.97
3tjx_A	354	Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh	97.91
1vcf_A	332	Isopentenyl-diphosphate delta-isomerase; TIM barre	97.88
1kbi_A	511	Cytochrome B2, L-LCR; flavocytochrome B2, electron	97.88
1z41_A	338	YQJM, probable NADH-dependent flavin oxidoreductas	97.86
2c6q_A	351	GMP reductase 2; TIM barrel, metal-binding, NADP,	97.83
1to3_A	304	Putative aldolase YIHT; beta-alpha barrel, structu	97.82
1ep3_A	311	Dihydroorotate dehydrogenase B (PYRD subunit); het	97.8
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	97.79
1mzh_A	225	Deoxyribose-phosphate aldolase; alpha-beta barrel,	97.78
3sr7_A	365	Isopentenyl-diphosphate delta-isomerase; isopenten	97.78
3jr2_A	218	Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon	97.77
3l5l_A	363	Xenobiotic reductase A; TIM barrel, oxidoreductase	97.74
2bdq_A	224	Copper homeostasis protein CUTC; alpha beta protei	97.72
3kts_A	192	Glycerol uptake operon antiterminator regulatory;	97.7
3tjl_A	407	NADPH dehydrogenase; OLD yellow enzyme, flavin mon	97.68
2pgw_A	384	Muconate cycloisomerase; enolase superfamily, octa	97.66
3hgj_A	349	Chromate reductase; TIM barrel, oxidoreductase; HE	97.61
1hg3_A	225	Triosephosphate isomerase; thermostability, tetram	97.55
3b0p_A	350	TRNA-dihydrouridine synthase; TIM barrel, oxidored	97.54
3f4w_A	211	Putative hexulose 6 phosphate synthase; humps, mal	97.53
1mdl_A	359	Mandelate racemase; isomerase, mandelate pathway,	97.53
2uva_G	2060	Fatty acid synthase beta subunits; fungal, dehydra	97.49
2ovl_A	371	Putative racemase; structural genomics, PSI-2, pro	97.48
2rdx_A	379	Mandelate racemase/muconate lactonizing enzyme, P;	97.47
1geq_A	248	Tryptophan synthase alpha-subunit; hyperthermophIl	97.47
1w0m_A	226	TIM, triosephosphate isomerase; glycolysis, glucon	97.45
3ozy_A	389	Putative mandelate racemase; beta-alpha barrel, en	97.43
1vc4_A	254	Indole-3-glycerol phosphate synthase; lyase, trypt	97.42
2zbt_A	297	Pyridoxal biosynthesis lyase PDXS; pyridoxine bios	97.41
1vhn_A	318	Putative flavin oxidoreducatase; structural genomi	97.37
2hzg_A	401	Mandelate racemase/muconate lactonizing enzyme/EN	97.36
1vkf_A	188	Glycerol uptake operon antiterminator-related Pro;	97.35
1wv2_A	265	Thiazole moeity, thiazole biosynthesis protein THI	97.34
1jub_A	311	Dihydroorotate dehydrogenase A; homodimer, alpha-b	97.34
2qgy_A	391	Enolase from the environmental genome shotgun sequ	97.33
3eez_A	378	Putative mandelate racemase/muconate lactonizing e	97.32
1f76_A	336	Dihydroorotate dehydrogenase; monomer, alpha-beta-	97.3
3l5a_A	419	NADH/flavin oxidoreductase/NADH oxidase; OLD yello	97.3
4a3u_A	358	NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET	97.27
1rvk_A	382	Isomerase/lactonizing enzyme; enolase superfamily,	97.26
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	97.22
2htm_A	268	Thiazole biosynthesis protein THIG; thiamin biosyn	97.22
2p8b_A	369	Mandelate racemase/muconate lactonizing enzyme fam	97.21
3glc_A	295	Aldolase LSRF; TIM barrel, lyase, schiff base; HET	97.19
3i65_A	415	Dihydroorotate dehydrogenase homolog, mitochondria	97.15
3zwt_A	367	Dihydroorotate dehydrogenase (quinone), mitochond;	97.14
1nu5_A	370	Chloromuconate cycloisomerase; enzyme, dehalogenat	97.11
3jva_A	354	Dipeptide epimerase; enolase superfamily, isomeras	97.11
3i4k_A	383	Muconate lactonizing enzyme; structural genomics,	97.1
3vnd_A	267	TSA, tryptophan synthase alpha chain; psychrophili	97.09
1tkk_A	366	Similar to chloromuconate cycloisomerase; epimeras	97.06
2e6f_A	314	Dihydroorotate dehydrogenase; chagas disease, pyri	97.06
3tsm_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	97.05
3oix_A	345	Putative dihydroorotate dehydrogenase; dihydrooro	97.0
2nql_A	388	AGR_PAT_674P, isomerase/lactonizing enzyme; enolas	97.0
2og9_A	393	Mandelate racemase/muconate lactonizing enzyme; NY	96.99
1yxy_A	234	Putative N-acetylmannosamine-6-phosphate 2-epimer;	96.99
1y0e_A	223	Putative N-acetylmannosamine-6-phosphate 2-epimer;	96.98
3stp_A	412	Galactonate dehydratase, putative; PSI biology, st	96.94
2qdd_A	378	Mandelate racemase/muconate lactonizing enzyme; en	96.93
3q45_A	368	Mandelate racemase/muconate lactonizing enzyme FA	96.93
1rd5_A	262	Tryptophan synthase alpha chain, chloroplast; hydr	96.93
2ps2_A	371	Putative mandelate racemase/muconate lactonizing e	96.92
1sjd_A	368	N-acylamino acid racemase; lyase, isomerase; HET:	96.92
3rr1_A	405	GALD, putative D-galactonate dehydratase; enolase,	96.9
1qop_A	268	Tryptophan synthase alpha chain; lyase, carbon-oxy	96.9
3mqt_A	394	Mandelate racemase/muconate lactonizing protein; P	96.9
1tqx_A	227	D-ribulose-5-phosphate 3-epimerase, putative; stru	96.89
1h1y_A	228	D-ribulose-5-phosphate 3-epimerase; oxidative pent	96.88
1xg4_A	295	Probable methylisocitrate lyase; 2-methylisocitrat	96.87
2qde_A	397	Mandelate racemase/muconate lactonizing enzyme FA	96.87
3exr_A	221	RMPD (hexulose-6-phosphate synthase); beta barrel,	96.86
2tps_A	227	Protein (thiamin phosphate synthase); thiamin bios	96.85
2gou_A	365	Oxidoreductase, FMN-binding; OLD yeallow enzyme, f	96.84
1q6o_A	216	Humps, 3-keto-L-gulonate 6-phosphate decarboxylase	96.83
3my9_A	377	Muconate cycloisomerase; structural genomics, PSI-	96.83
3mkc_A	394	Racemase; metabolic process, PSI2, NYSGXRC, struct	96.82
3nav_A	271	Tryptophan synthase alpha chain; alpha subunit, st	96.81
3sbf_A	401	Mandelate racemase / muconate lactonizing enzyme;	96.81
1xi3_A	215	Thiamine phosphate pyrophosphorylase; structural g	96.8
1w8s_A	263	FBP aldolase, fructose-bisphosphate aldolase class	96.8
1p0k_A	349	Isopentenyl-diphosphate delta-isomerase; terpene b	96.8
1vyr_A	364	Pentaerythritol tetranitrate reductase; oxidoreduc	96.78
3mwc_A	400	Mandelate racemase/muconate lactonizing protein; e	96.78
4e5t_A	404	Mandelate racemase / muconate lactonizing enzyme,	96.77
1qap_A	296	Quinolinic acid phosphoribosyltransferase; glycosy	96.75
1tv5_A	443	Dhodehase, dihydroorotate dehydrogenase homolog, m	96.74
3igs_A	232	N-acetylmannosamine-6-phosphate 2-epimerase 2; ene	96.74
3rcy_A	433	Mandelate racemase/muconate lactonizing enzyme-LI	96.73
3cwo_X	237	Beta/alpha-barrel protein based on 1THF and 1TMY;	96.72
1tzz_A	392	Hypothetical protein L1841; structural genomics, m	96.71
3ddm_A	392	Putative mandelate racemase/muconate lactonizing e	96.71
2oz8_A	389	MLL7089 protein; structural genomics, unknown func	96.69
1xm3_A	264	Thiazole biosynthesis protein THIG; structural gen	96.68
3gd6_A	391	Muconate cycloisomerase; structural genomics, NYSG	96.67
1ujp_A	271	Tryptophan synthase alpha chain; riken structural	96.67
3q58_A	229	N-acetylmannosamine-6-phosphate 2-epimerase; TIM b	96.66
1nsj_A	205	PRAI, phosphoribosyl anthranilate isomerase; therm	96.65
3oa3_A	288	Aldolase; structural genomics, seattle structural	96.64
3toy_A	383	Mandelate racemase/muconate lactonizing enzyme FA	96.63
1v5x_A	203	PRA isomerase, phosphoribosylanthranilate isomeras	96.63
3dg3_A	367	Muconate cycloisomerase; muconate lactonizing enzy	96.62
2r14_A	377	Morphinone reductase; H-tunnelling, flavoprotein,	96.62
2qr6_A	393	IMP dehydrogenase/GMP reductase; NP_599840.1, G re	96.61
4dwd_A	393	Mandelate racemase/muconate lactonizing enzyme, C	96.6
2pp0_A	398	L-talarate/galactarate dehydratase; enolase superf	96.6
3sjn_A	374	Mandelate racemase/muconate lactonizing protein; e	96.59
4e4u_A	412	Mandalate racemase/muconate lactonizing enzyme; ma	96.56
3ro6_B	356	Putative chloromuconate cycloisomerase; TIM barrel	96.55
3bjs_A	428	Mandelate racemase/muconate lactonizing enzyme; en	96.55
3ugv_A	390	Enolase; enzyme function initiative, EFI, lyase; 2	96.54
4ef8_A	354	Dihydroorotate dehydrogenase; phenyl isothiocyanat	96.54
2gdq_A	382	YITF; mandelate racemase/muconate lactonizing enzy	96.53
3r0u_A	379	Enzyme of enolase superfamily; structural genomics	96.53
2poz_A	392	Putative dehydratase; octamer, structural genomics	96.52
3ajx_A	207	3-hexulose-6-phosphate synthase; HPS, OMPDC supraf	96.52
3zen_D	3089	Fatty acid synthase; transferase, mycolic acid bio	96.51
2v82_A	212	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l	96.49
3vcn_A	425	Mannonate dehydratase; enolase, magnesium binding	96.48
1vcf_A	332	Isopentenyl-diphosphate delta-isomerase; TIM barre	96.48
3tji_A	422	Mandelate racemase/muconate lactonizing enzyme, N	96.48
2uv8_G	2051	Fatty acid synthase subunit beta (FAS1); fatty aci	96.48
1chr_A	370	Chloromuconate cycloisomerase; 3.00A {Ralstonia eu	96.47
1p4c_A	380	L(+)-mandelate dehydrogenase; TIM barrel, hydroxy	96.46
3tha_A	252	Tryptophan synthase alpha chain; structural genomi	96.46
4adt_A	297	Pyridoxine biosynthetic enzyme PDX1 homologue, PU;	96.45
3tj4_A	372	Mandelate racemase; enolase, dehydratase, enzyme f	96.45
2o56_A	407	Putative mandelate racemase; dehydratase, structur	96.43
3i6e_A	385	Muconate cycloisomerase I; structural genomics, NY	96.4
2gl5_A	410	Putative dehydratase protein; structural genomics,	96.4
2p10_A	286	MLL9387 protein; putative phosphonopyruvate hydrol	96.39
2z6i_A	332	Trans-2-enoyl-ACP reductase II; fatty acid synthes	96.39
2ox4_A	403	Putative mandelate racemase; enolase, dehydratase,	96.37
2nli_A	368	Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid	96.35
1gox_A	370	(S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu	96.34
1ypf_A	336	GMP reductase; GUAC, purines, pyrimidines, nucleos	96.32
3v3w_A	424	Starvation sensing protein RSPA; enolase, enzyme f	96.3
4ab4_A	362	Xenobiotic reductase B; oxidoreductase, OLD yellow	96.27
2b7n_A	273	Probable nicotinate-nucleotide pyrophosphorylase;	96.26
3gka_A	361	N-ethylmaleimide reductase; decode biostructures,	96.25
3dgb_A	382	Muconate cycloisomerase; muconate lactonizing enzy	96.24
2ekc_A	262	AQ_1548, tryptophan synthase alpha chain; structur	96.24
3r4e_A	418	Mandelate racemase/muconate lactonizing enzyme; en	96.24
3ctl_A	231	D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p	96.24
3aty_A	379	Tcoye, prostaglandin F2A synthase; alpha/beta barr	96.24
3fcp_A	381	L-Ala-D/L-Glu epimerase, A muconate lactonizing en	96.23
2gjl_A	328	Hypothetical protein PA1024; 2-nitropropane dioxyg	96.21
3bo9_A	326	Putative nitroalkan dioxygenase; TM0800, structura	96.18
3sgz_A	352	Hydroxyacid oxidase 2; flavoprotein, homology, INH	96.17
2qq6_A	410	Mandelate racemase/muconate lactonizing enzyme- li	96.17
1o4u_A	285	Type II quinolic acid phosphoribosyltransferase; s	96.17
2jbm_A	299	Nicotinate-nucleotide pyrophosphorylase; NAD, enzy	96.16
3inp_A	246	D-ribulose-phosphate 3-epimerase; IDP02542, isomer	96.15
3kru_A	343	NADH:flavin oxidoreductase/NADH oxidase; homotetra	96.12
4e8g_A	391	Enolase, mandelate racemase/muconate lactonizing e	96.12
3ovp_A	228	Ribulose-phosphate 3-epimerase; iron binding, isom	96.1
1tqj_A	230	Ribulose-phosphate 3-epimerase; beta-alpha barrel	96.09
1ea0_A	1479	Glutamate synthase [NADPH] large chain; oxidoreduc	96.08
2hxt_A	441	L-fuconate dehydratase; enolase superfamily, D-ery	96.08
1r0m_A	375	N-acylamino acid racemase; isomerase; 1.30A {Deino	96.07
3dip_A	410	Enolase; structural genomics, isomerase, PSI-2, pr	96.05
2hsa_B	402	12-oxophytodienoate reductase 3; alpha beta 8 barr	96.04
3t6c_A	440	RSPA, putative MAND family dehydratase; enolase, m	96.03
1icp_A	376	OPR1, 12-oxophytodienoate reductase 1; beta-alpha-	96.03
3qja_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	96.0
3ngj_A	239	Deoxyribose-phosphate aldolase; lyase, structural	95.97
1x1o_A	286	Nicotinate-nucleotide pyrophosphorylase; transfera	95.97
3ih1_A	305	Methylisocitrate lyase; alpha-beta structure, TIM-	95.96
2nzl_A	392	Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G	95.9
4dxk_A	400	Mandelate racemase / muconate lactonizing enzyme p	95.89
3khj_A	361	Inosine-5-monophosphate dehydrogenase; enzyme-inhi	95.87
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	95.86
4aaj_A	228	N-(5'-phosphoribosyl)anthranilate isomerase; alpha	95.85
1ofd_A	1520	Ferredoxin-dependent glutamate synthase 2; oxidore	95.81
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	95.81
1kbi_A	511	Cytochrome B2, L-LCR; flavocytochrome B2, electron	95.8
3c2e_A	294	Nicotinate-nucleotide pyrophosphorylase; qprtase,	95.8
3cu2_A	237	Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib	95.8
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	95.8
2zad_A	345	Muconate cycloisomerase; muconate lactonizing enzy	95.75
2czd_A	208	Orotidine 5'-phosphate decarboxylase; pyrimidine b	95.74
1ub3_A	220	Aldolase protein; schiff base, deoxyribose phospha	95.73
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	95.72
1qpo_A	284	Quinolinate acid phosphoribosyl transferase; type	95.71
3eoo_A	298	Methylisocitrate lyase; seattle structural genomic	95.69
2h9a_B	310	CO dehydrogenase/acetyl-COA synthase, iron- sulfur	95.65
2fli_A	220	Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr	95.63
3r12_A	260	Deoxyribose-phosphate aldolase; TIM beta/alpha-bar	95.63
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	95.62
3r2g_A	361	Inosine 5'-monophosphate dehydrogenase; structural	95.58
3jr2_A	218	Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon	95.54
3b8i_A	287	PA4872 oxaloacetate decarboxylase; alpha/beta barr	95.53
3ffs_A	400	Inosine-5-monophosphate dehydrogenase; beta-alpha	95.52
1rpx_A	230	Protein (ribulose-phosphate 3-epimerase); chloropl	95.51
4fo4_A	366	Inosine 5'-monophosphate dehydrogenase; structural	95.47
3fv9_G	386	Mandelate racemase/muconate lactonizing enzyme; st	95.44
1yad_A	221	Regulatory protein TENI; TIM barrel, transcription	95.42
4e4f_A	426	Mannonate dehydratase; magnesium binding, enzyme f	95.38
4dye_A	398	Isomerase; enolase family protein, EFI, enzym func	95.32
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	95.3
1gvf_A	286	Tagatose-bisphosphate aldolase AGAY; lyase, zinc.;	95.3
4djd_D	323	C/Fe-SP, corrinoid/iron-sulfur protein small subun	95.28
2zc8_A	369	N-acylamino acid racemase; octamer, TIM beta/alpha	95.24
2c6q_A	351	GMP reductase 2; TIM barrel, metal-binding, NADP,	95.21
3p3b_A	392	Mandelate racemase/muconate lactonizing protein; e	95.21
3ndo_A	231	Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid	95.21
4a35_A	441	Mitochondrial enolase superfamily member 1; isomer	95.19
1vkf_A	188	Glycerol uptake operon antiterminator-related Pro;	95.17
3q94_A	288	Fructose-bisphosphate aldolase, class II; structur	95.17
2nv1_A	305	Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b	95.1
1wa3_A	205	2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG,	95.08
2qjg_A	273	Putative aldolase MJ0400; beta-alpha barrel, lyase	95.08
2yw3_A	207	4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox	95.07
1s2w_A	295	Phosphoenolpyruvate phosphomutase; phosphonopyruva	95.03
1eep_A	404	Inosine 5'-monophosphate dehydrogenase; alpha-beta	95.02
1mzh_A	225	Deoxyribose-phosphate aldolase; alpha-beta barrel,	94.99
1pii_A	452	N-(5'phosphoribosyl)anthranilate isomerase; bifunc	94.96
3tcs_A	388	Racemase, putative; PSI-biology, nysgrc, structura	94.94
1zlp_A	318	PSR132, petal death protein; TIM-barrel, helix swa	94.94
4gbu_A	400	NADPH dehydrogenase 1; alpha/beta barrel, enenone	94.93
2h6r_A	219	Triosephosphate isomerase; beta-alpha barrel; 2.30	94.9
3vkj_A	368	Isopentenyl-diphosphate delta-isomerase; type 2 is	94.78
3go2_A	409	Putative L-alanine-DL-glutamate epimerase; structu	94.73
3bw2_A	369	2-nitropropane dioxygenase; TIM barrel, oxidoreduc	94.72
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	94.66
4hpn_A	378	Putative uncharacterized protein; enolase, enzyme	94.64
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	94.44
4hnl_A	421	Mandelate racemase/muconate lactonizing enzyme; de	94.39
3paj_A	320	Nicotinate-nucleotide pyrophosphorylase, carboxyl;	94.37
1vhc_A	224	Putative KHG/KDPG aldolase; structural genomics, u	94.29
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	94.15
1ydn_A	295	Hydroxymethylglutaryl-COA lyase; TIM-barrel protei	94.14
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	93.96
1n7k_A	234	Deoxyribose-phosphate aldolase; A.pernix, tetramer	93.89
3sr7_A	365	Isopentenyl-diphosphate delta-isomerase; isopenten	93.84
3gnn_A	298	Nicotinate-nucleotide pyrophosphorylase; decode bi	93.83
4h83_A	388	Mandelate racemase/muconate lactonizing enzyme; st	93.77
3tqv_A	287	Nicotinate-nucleotide pyrophosphorylase; glycosylt	93.71
1rvg_A	305	Fructose-1,6-bisphosphate aldolase; class II aldol	93.59
3o07_A	291	Pyridoxine biosynthesis protein SNZ1; (beta/alpha)	93.57
1aw2_A	256	Triosephosphate isomerase; psychrophilic, vibrio m	93.48
1q6o_A	216	Humps, 3-keto-L-gulonate 6-phosphate decarboxylase	93.47
1yya_A	250	Triosephosphate isomerase; riken structural genomi	93.34
3m9y_A	254	Triosephosphate isomerase; TIM barrel, glycolysis,	93.24
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	93.23
3o63_A	243	Probable thiamine-phosphate pyrophosphorylase; thi	93.15
3fok_A	307	Uncharacterized protein CGL0159; CGL0159 ,brevibac	93.1
1nvm_A	345	HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered	93.09
3exr_A	221	RMPD (hexulose-6-phosphate synthase); beta barrel,	92.87
3tjx_A	354	Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh	92.76
2czd_A	208	Orotidine 5'-phosphate decarboxylase; pyrimidine b	92.72
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	92.63
1wbh_A	214	KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli}	92.54
2yci_X	271	5-methyltetrahydrofolate corrinoid/iron sulfur PR	92.43
1wuf_A	393	Hypothetical protein LIN2664; structural genomics,	92.42
1o5x_A	248	TIM, triosephosphate isomerase; 2- phosphoglycerat	92.21
3n9r_A	307	Fructose-bisphosphate aldolase; FBP aldolase, clas	92.11
2isw_A	323	Putative fructose-1,6-bisphosphate aldolase; class	91.9
3krs_A	271	Triosephosphate isomerase; ssgcid, SBRI, emerald b	91.86
1dbt_A	239	Orotidine 5'-phosphate decarboxylase; UMP, TIM bar	91.77
2chr_A	370	Chloromuconate cycloisomerase; 3.00A {Cupriavidus	91.72
2yc6_A	257	Triosephosphate isomerase; glycolysis; HET: PGA; 1	91.65
1twd_A	256	Copper homeostasis protein CUTC; TIM-like protein,	91.6
3l0g_A	300	Nicotinate-nucleotide pyrophosphorylase; ssgcid, N	91.56
3ik4_A	365	Mandelate racemase/muconate lactonizing protein; s	91.47
2yzr_A	330	Pyridoxal biosynthesis lyase PDXS; redox protein,	91.33
4h1z_A	412	Enolase Q92ZS5; dehydratase, magnesium binding sit	91.29
3qld_A	388	Mandelate racemase/muconate lactonizing protein; s	91.21
2uva_G	2060	Fatty acid synthase beta subunits; fungal, dehydra	91.1
4a3u_A	358	NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET	90.94
1o4u_A	285	Type II quinolic acid phosphoribosyltransferase; s	90.76
2btm_A	252	TIM, protein (triosephosphate isomerase); thermoph	90.75
2vxn_A	251	Triosephosphate isomerase; fatty acid biosynthesis	90.64
2ozt_A	332	TLR1174 protein; structural genomics, O-succinylbe	90.63
2ftp_A	302	Hydroxymethylglutaryl-COA lyase; structural genomi	90.51
3tqv_A	287	Nicotinate-nucleotide pyrophosphorylase; glycosylt	90.49
1x1o_A	286	Nicotinate-nucleotide pyrophosphorylase; transfera	90.46
4a29_A	258	Engineered retro-aldol enzyme RA95.0; de novo prot	90.36
3l0g_A	300	Nicotinate-nucleotide pyrophosphorylase; ssgcid, N	90.29
3qst_A	255	Triosephosphate isomerase, putative; TIM barrel; 1	90.26
1tre_A	255	Triosephosphate isomerase; intramolecular oxidored	90.18
1to3_A	304	Putative aldolase YIHT; beta-alpha barrel, structu	90.14
3m47_A	228	Orotidine 5'-phosphate decarboxylase; orotidine 5'	90.08
1eix_A	245	Orotidine 5'-monophosphate decarboxylase; alpha-be	90.02
2yyu_A	246	Orotidine 5'-phosphate decarboxylase; TIM barrel,	89.9
3noy_A	366	4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth;	89.68
3iwp_A	287	Copper homeostasis protein CUTC homolog; conserved	89.62
1mxs_A	225	KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a	89.59
3paj_A	320	Nicotinate-nucleotide pyrophosphorylase, carboxyl;	89.45
1zco_A	262	2-dehydro-3-deoxyphosphoheptonate aldolase; arabin	89.44
1r2r_A	248	TIM, triosephosphate isomerase; closed loop confor	89.27
3ru6_A	303	Orotidine 5'-phosphate decarboxylase; structural g	89.11
1mo0_A	275	TIM, triosephosphate isomerase; structural genomic	89.01
1vqt_A	213	Orotidine 5'-phosphate decarboxylase; TM0332, stru	89.0
1vcv_A	226	Probable deoxyribose-phosphate aldolase; DERA, hyp	88.98
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	88.9
1qap_A	296	Quinolinic acid phosphoribosyltransferase; glycosy	88.75
2hjp_A	290	Phosphonopyruvate hydrolase; phosporus-Ca cleavage	88.6
1wue_A	386	Mandelate racemase/muconate lactonizing enzyme FA	88.44
3pm6_A	306	Putative fructose-bisphosphate aldolase; structura	88.36
2ojp_A	292	DHDPS, dihydrodipicolinate synthase; dimer, lysine	88.24
2h9a_A	445	Carbon monoxide dehydrogenase corrinoid/iron- sulf	88.19
1qpo_A	284	Quinolinate acid phosphoribosyl transferase; type	88.05
4e38_A	232	Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho	87.95
3gnn_A	298	Nicotinate-nucleotide pyrophosphorylase; decode bi	87.88
3s5s_A	389	Mandelate racemase/muconate lactonizing enzyme FA	87.52
3eeg_A	325	2-isopropylmalate synthase; 11106D, beta barrel, P	87.5
2pge_A	377	MENC; OSBS, NYSGXRC, PSI-II, structural genomics,	87.49
3cyj_A	372	Mandelate racemase/muconate lactonizing enzyme-LI	87.46
3l21_A	304	DHDPS, dihydrodipicolinate synthase; DAPA, dimer,	87.43
4h2h_A	376	Mandelate racemase/muconate lactonizing enzyme; en	87.32
3ekg_A	404	Mandelate racemase/muconate lactonizing enzyme; st	87.17
3th6_A	249	Triosephosphate isomerase; alpha/beta barrel, embr	86.96
3b4u_A	294	Dihydrodipicolinate synthase; structural genomics,	86.93
2dqw_A	294	Dihydropteroate synthase; dimer, structural genomi	86.92
1m6j_A	261	TIM, TPI, triosephosphate isomerase; asymmetry, mo	86.74
2i9e_A	259	Triosephosphate isomerase; 2.00A {Tenebrio molitor	86.7
3tjl_A	407	NADPH dehydrogenase; OLD yellow enzyme, flavin mon	86.59
2jgq_A	233	Triosephosphate isomerase; glycolysis, pentose shu	86.55
3iv3_A	332	Tagatose 1,6-diphosphate aldolase 2; TIM barrel, p	86.47
2bdq_A	224	Copper homeostasis protein CUTC; alpha beta protei	86.37
1w8s_A	263	FBP aldolase, fructose-bisphosphate aldolase class	86.13
3lab_A	217	Putative KDPG (2-keto-3-deoxy-6-phosphogluconate)	86.08
2ehh_A	294	DHDPS, dihydrodipicolinate synthase; structural ge	86.04
3daq_A	292	DHDPS, dihydrodipicolinate synthase; lysine biosyn	85.86
2yxg_A	289	DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b	85.84
1xky_A	301	Dihydrodipicolinate synthase; TIM barrel, , lysine	85.82
3ve9_A	215	Orotidine-5'-phosphate decarboxylase; TIM barrel f	85.76
3u9i_A	393	Mandelate racemase/muconate lactonizing enzyme, C	85.65
2wkj_A	303	N-acetylneuraminate lyase; directed evolution, sia	85.62
2b7n_A	273	Probable nicotinate-nucleotide pyrophosphorylase;	85.33
1o5k_A	306	DHDPS, dihydrodipicolinate synthase; TM1521, struc	85.26
2yxb_A	161	Coenzyme B12-dependent mutase; alpha/beta, structu	85.2
1yya_A	250	Triosephosphate isomerase; riken structural genomi	85.16
3fkr_A	309	L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f	84.98
1p1x_A	260	Deoxyribose-phosphate aldolase; alpha-beta barrel,	84.95
3flu_A	297	DHDPS, dihydrodipicolinate synthase; TIM barrel, b	84.94
3m5v_A	301	DHDPS, dihydrodipicolinate synthase; TIM barrel, c	84.91
3qfe_A	318	Putative dihydrodipicolinate synthase family PROT;	84.76
2r8w_A	332	AGR_C_1641P; APC7498, dihydrodipicolinate synthase	84.58
3tak_A	291	DHDPS, dihydrodipicolinate synthase; TIM barrel, l	84.51
3s5o_A	307	4-hydroxy-2-oxoglutarate aldolase, mitochondrial;	84.44
1eix_A	245	Orotidine 5'-monophosphate decarboxylase; alpha-be	84.38
3cpr_A	304	Dihydrodipicolinate synthetase; (beta/alpha)8-barr	84.34
1ea0_A	1479	Glutamate synthase [NADPH] large chain; oxidoreduc	84.24
3vdg_A	445	Probable glucarate dehydratase; enolase, magnesium	84.07
2v9d_A	343	YAGE; dihydrodipicolinic acid synthase, N-acetyl n	84.07
3va8_A	445	Probable dehydratase; enolase, magnesium binding s	84.02
3kxq_A	275	Triosephosphate isomerase; ssgcid, NIH, niaid, SBR	83.99
1f6k_A	293	N-acetylneuraminate lyase; beta barrel; 1.60A {Hae	83.97
1ney_A	247	TIM, triosephosphate isomerase; yeast, DHAP, dihyd	83.88
3qze_A	314	DHDPS, dihydrodipicolinate synthase; alpha beta ba	83.86
2rfg_A	297	Dihydrodipicolinate synthase; beta barrel, amino-a	83.77
3a5f_A	291	Dihydrodipicolinate synthase; TIM barrel, enzyme,	83.72
3ivs_A	423	Homocitrate synthase, mitochondrial; TIM barrel, m	83.69
2ze3_A	275	DFA0005; organic waste LEFT-OVER decomposition, al	83.66

>4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp}

Probab=100.00  E-value=5.7e-54  Score=392.11  Aligned_cols=236  Identities=22%  Similarity=0.331  Sum_probs=200.4

Q ss_pred             ccEEEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCCc----ccHHHHHHH
Q 021156           53 AVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADP----LSKAAAIEA  128 (316)
Q Consensus        53 ~~~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~~----~~~~~i~~~  128 (316)
                      ++||||||||++|+|||+++|++.        ..+.|  .+||+++|+.|.++|++++|++|||++.    .+...+.++
T Consensus         1 M~~IIP~IDl~~G~vVrlv~G~~~--------~~~~~--~~dP~~~a~~~~~~gad~lhvvDld~a~~~~~~~~~~i~~i   70 (243)
T 4gj1_A            1 MTQIIPALDLIDGEVVRLVKGDYE--------QKKVY--KYNPLKKFKEYEKAGAKELHLVDLTGAKDPSKRQFALIEKL   70 (243)
T ss_dssp             -CEEEEEEEEETTEEEEEECSSSC--------EEEEC--CCCHHHHHHHHHHHTCCEEEEEEHHHHHCGGGCCHHHHHHH
T ss_pred             CCEEEEEEEEECCeEEEEEccCcC--------CCcEe--CCCHHHHHHHHHHCCCCEEEEEecCcccccchhHHHHHHHH
Confidence            589999999999999999998654        34666  4799999999999999999999999762    344555566


Q ss_pred             HHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCc
Q 021156          129 LHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRW  207 (316)
Q Consensus       129 v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw  207 (316)
                      .+.+++|+||||||| .+++++++++||++|++||.+++|    |+++.++++.||++++++++|++.+ +.|.+++++|
T Consensus        71 ~~~~~~pl~vGGGIrs~e~~~~~l~~GadkVii~t~a~~~----p~li~e~~~~~g~q~iv~~iD~~~~-~~~~v~~~gw  145 (243)
T 4gj1_A           71 AKEVSVNLQVGGGIRSKEEVKALLDCGVKRVVIGSMAIKD----ATLCLEILKEFGSEAIVLALDTILK-EDYVVAVNAW  145 (243)
T ss_dssp             HHHCCSEEEEESSCCCHHHHHHHHHTTCSEEEECTTTTTC----HHHHHHHHHHHCTTTEEEEEEEEES-SSEEEC----
T ss_pred             HHhcCCCeEeccccccHHHHHHHHHcCCCEEEEccccccC----CchHHHHHhcccCceEEEEEEEEeC-CCCEEEecCc
Confidence            678999999999999 599999999999999999999998    9999999999999999999999753 3478999999


Q ss_pred             ceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcC-CCcEEEEeCCCCHHHHHHHHHhCCCcCEEE
Q 021156          208 QKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYS-PIPVTYAGGVTTMADLEKIKVAGIGRVDVT  286 (316)
Q Consensus       208 ~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~-~iPVIasGGI~s~eDi~~l~~~G~g~~gVi  286 (316)
                      ++.++.++.++++++.+.|++++++|++++|||++|||+++++++++.+ ++|||++||+++++|+.++. .+  ++||+
T Consensus       146 ~~~~~~~~~~~~~~~~~~g~~eil~t~Id~DGt~~G~d~~l~~~l~~~~~~ipviasGGv~~~~Dl~~l~-~~--~~gvi  222 (243)
T 4gj1_A          146 QEASDKKLMEVLDFYSNKGLKHILCTDISKDGTMQGVNVRLYKLIHEIFPNICIQASGGVASLKDLENLK-GI--CSGVI  222 (243)
T ss_dssp             ----CCBHHHHHHHHHTTTCCEEEEEETTC-----CCCHHHHHHHHHHCTTSEEEEESCCCSHHHHHHTT-TT--CSEEE
T ss_pred             eecccchHHHHHHHHhhcCCcEEEeeeecccccccCCCHHHHHHHHHhcCCCCEEEEcCCCCHHHHHHHH-cc--Cchhe
Confidence            9999999999999999999999999999999999999999999998865 79999999999999999985 34  89999


Q ss_pred             EccchhhccCcccHHHHHHHHH
Q 021156          287 VGSALDIFGGNLAYKDVVAWHA  308 (316)
Q Consensus       287 vG~Al~~~~g~~~~~~~~~~~~  308 (316)
                      +|+|+  |+|.++++|++++++
T Consensus       223 vg~Al--~~g~i~l~ea~~~l~  242 (243)
T 4gj1_A          223 VGKAL--LDGVFSVEEGIRCLA  242 (243)
T ss_dssp             ECHHH--HTTSSCHHHHHHHHC
T ss_pred             hHHHH--HCCCCCHHHHHHHhh
Confidence            99999  999999999998764

>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-51  Score=377.83  Aligned_cols=248  Identities=42%  Similarity=0.758  Sum_probs=203.5

Q ss_pred             EEEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHhCCC
Q 021156           55 RFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAYPG  134 (316)
Q Consensus        55 ~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~~~  134 (316)
                      ||||||||++|+|||+++|+|++.  .+....++|...+||+++|+.|.+.|++++|++|||+  .+...+.++.+++++
T Consensus         2 riiP~iDl~~G~~V~~~~G~~~~~--~~~~~~~~~~~~~dp~~~A~~~~~~Ga~~l~vvDL~~--~n~~~i~~i~~~~~~   77 (260)
T 2agk_A            2 KFIGCIDLHNGEVKQIVGGTLTSK--KEDVPKTNFVSQHPSSYYAKLYKDRDVQGCHVIKLGP--NNDDAAREALQESPQ   77 (260)
T ss_dssp             CEECEEEEETTEECC----------------------CCCHHHHHHHHHHTTCTTCEEEEESS--SCHHHHHHHHHHSTT
T ss_pred             eEEEEEEEECCEEEEccccccccc--cccccccccccCCCHHHHHHHHHHcCCCEEEEEeCCC--CCHHHHHHHHhcCCc
Confidence            799999999999999999987632  1100123433357999999999999999999999998  456666666678899


Q ss_pred             cEEEecCCCHHHHHHHHHcCCCEEEeCCeeecC-CCCCHHHHHHHHHHhcCceEEEeeeeeecCC-eeEEEeCCcceecc
Q 021156          135 GLQVGGGINSDNSLSYIEEGATHVIVTSYVFNN-GQMDLERLKDLVRVVGKQRLVLDLSCRKKDG-KYAIVTDRWQKFSD  212 (316)
Q Consensus       135 pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~-~~~~~eli~ei~~~~G~~~IvvslD~k~~~g-~~~v~~~gw~~~~~  212 (316)
                      |+|+|||||++++++++ +||++|++||++++| ++++|+++++++++||++++++++|+|++++ .|.|+++||.+.++
T Consensus        78 pv~vgGGir~~~~~~~l-~Ga~~Viigs~a~~~~g~~~p~~~~~~~~~~g~~~ivv~iD~k~~~~~g~~V~~~gw~~~t~  156 (260)
T 2agk_A           78 FLQVGGGINDTNCLEWL-KWASKVIVTSWLFTKEGHFQLKRLERLTELCGKDRIVVDLSCRKTQDGRWIVAMNKWQTLTD  156 (260)
T ss_dssp             TSEEESSCCTTTHHHHT-TTCSCEEECGGGBCTTCCBCHHHHHHHHHHHCGGGEEEEEEEEEEETTEEEEEETTTTEEEE
T ss_pred             eEEEeCCCCHHHHHHHh-cCCCEEEECcHHHhhcCCCCHHHHHHHHHHhCcCcEEEEEEeeecCCCceEEEEcCCccccC
Confidence            99999999966999999 999999999999998 7888999999999999899999999986534 46899999999888


Q ss_pred             cCHH-HHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcC----CCcEEEEeCCCCHHHHHHHHHh--CCCcCEE
Q 021156          213 VYLD-ERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYS----PIPVTYAGGVTTMADLEKIKVA--GIGRVDV  285 (316)
Q Consensus       213 ~~~~-e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~----~iPVIasGGI~s~eDi~~l~~~--G~g~~gV  285 (316)
                      .++. ++++.+++. ++++++|++++||+++|+|+++++++++.+    ++|||++||+++++|+.++++.  |  +++|
T Consensus       157 ~~~~~e~a~~~~~~-a~~il~t~i~~dG~~~G~d~eli~~l~~~~~~~~~iPVIasGGi~s~ed~~~l~~~~~G--~~gv  233 (260)
T 2agk_A          157 LELNADTFRELRKY-TNEFLIHAADVEGLCGGIDELLVSKLFEWTKDYDDLKIVYAGGAKSVDDLKLVDELSHG--KVDL  233 (260)
T ss_dssp             EEESHHHHHHHTTT-CSEEEEEC-------CCCCHHHHHHHHHHHTTCSSCEEEEESCCCCTHHHHHHHHHHTT--CEEE
T ss_pred             ccHHHHHHHHHHHh-cCEEEEEeeccccCcCCCCHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHhcCC--CCEE
Confidence            8888 999999999 999999999999999999999999999988    9999999999999999999998  7  9999


Q ss_pred             EEccchhhccCc-ccHHHHHHHHHhh
Q 021156          286 TVGSALDIFGGN-LAYKDVVAWHAQQ  310 (316)
Q Consensus       286 ivG~Al~~~~g~-~~~~~~~~~~~~~  310 (316)
                      ++|+|++.|+|+ |+++++++|++++
T Consensus       234 ivg~al~l~~g~~~~~~~~~~~~~~~  259 (260)
T 2agk_A          234 TFGSSLDIFGGNLVKFEDCCRWNEKQ  259 (260)
T ss_dssp             ECCTTBGGGTCSSBCHHHHHHHHHHH
T ss_pred             EeeCCHHHcCCCCCCHHHHHHHHHhc
Confidence            999995448999 9999999998765

>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A

Probab=100.00  E-value=1.7e-43  Score=357.04  Aligned_cols=255  Identities=18%  Similarity=0.242  Sum_probs=207.4

Q ss_pred             ccccccEEEEEEEee---CCeEEEEEcccccCC-CCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCCcc---c
Q 021156           49 SVRCAVRFRPCIDIH---KGKVKQIVGSTLQDS-KDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADPL---S  121 (316)
Q Consensus        49 ~~~~~~~iIP~IDi~---~G~vvr~~~g~~~~~-~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~~~---~  121 (316)
                      ..++.|+||||||++   +|+|| +++|..... .++++...+.+   +||+++|+.|.++|++++|++||++...   +
T Consensus       236 ~~~~~~~iip~iD~~~g~~g~~V-~~kg~~~~vr~~~g~~~~~~~---~dp~~~A~~~~~~Ga~~l~~~dl~~~~~~~~~  311 (555)
T 1jvn_A          236 NYGLTRRIIACLDVRTNDQGDLV-VTKGDQYDVREKSDGKGVRNL---GKPVQLAQKYYQQGADEVTFLNITSFRDCPLK  311 (555)
T ss_dssp             GGGCCCCEEEEEEEEECTTSCEE-SSTTC---------------C---HHHHHHHHHHHHTTCSEEEEEEEC---CCCGG
T ss_pred             CcceeEEEEEEEEEecCCCCcEE-EeccceeeEEecccccCceEc---CCHHHHHHHHHHcCCCEEEEEeCCccccccCC
Confidence            346778999999999   66666 222210000 00001122333   5999999999999999999999998631   2


Q ss_pred             ---HHHHHHHH-HhCCCcEEEecCCCH------------HHHHHHHHcCCCEEEeCCeeecC---------CCCCHHHHH
Q 021156          122 ---KAAAIEAL-HAYPGGLQVGGGINS------------DNSLSYIEEGATHVIVTSYVFNN---------GQMDLERLK  176 (316)
Q Consensus       122 ---~~~i~~~v-~~~~~pl~vGGGIr~------------e~~~~~l~~Gad~VVigt~~~~~---------~~~~~eli~  176 (316)
                         +..+++.+ +++++|+|+|||||+            +++++++++||++|+|||+.+++         ++.+|++++
T Consensus       312 ~~~~~~~i~~i~~~~~ipi~vgGGIr~~~d~~~~~~~~~~~a~~~l~aGad~V~igt~~~~~~~~~~~~~~~~~~~~~i~  391 (555)
T 1jvn_A          312 DTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYFRSGADKVSIGTDAVYAAEKYYELGNRGDGTSPIE  391 (555)
T ss_dssp             GCHHHHHHHHHTTTCCSCEEEESSCSCEECTTCCEECHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHTTSCCCSCSHHH
T ss_pred             CchHHHHHHHHHhhCCCcEEEeCccccchhcccccchHHHHHHHHHHcCCCEEEECCHHhhCchhhccccccccCHHHHH
Confidence               34454544 458999999999994            44999999999999999999773         234589999


Q ss_pred             HHHHHhcCceEEEeeeeeec--------------------CCe----eEEEeCCcceecccCHHHHHHHHHHcCCCEEEE
Q 021156          177 DLVRVVGKQRLVLDLSCRKK--------------------DGK----YAIVTDRWQKFSDVYLDERVLDFLASYADEFLV  232 (316)
Q Consensus       177 ei~~~~G~~~IvvslD~k~~--------------------~g~----~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilv  232 (316)
                      +++++||+++|++++|+|..                    +|+    |.|.++||++.+++++.++++++++.|++++++
T Consensus       392 ~~~~~~g~~~ivv~iD~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~Gw~~~~~~~~~e~a~~~~~~Ga~~il~  471 (555)
T 1jvn_A          392 TISKAYGAQAVVISVDPKRVYVNSQADTKNKVFETEYPGPNGEKYCWYQCTIKGGRESRDLGVWELTRACEALGAGEILL  471 (555)
T ss_dssp             HHHHHHCGGGEEEEECEEEEEESSGGGCSSCCEECSSCCTTCCCEEEEEEEETTTTEEEEEEHHHHHHHHHHTTCCEEEE
T ss_pred             HHHHHhCCCcEEEEEEccccccccccccccccccccccCCCCCcceeEEEEEecCccCCCCCHHHHHHHHHHcCCCEEEE
Confidence            99999999999999999742                    343    789999999988889999999999999999999


Q ss_pred             eecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHH-hCCCcCEEEEccchhhccCcccHHHHHHHHHhhc
Q 021156          233 HGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKV-AGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQQE  311 (316)
Q Consensus       233 tdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~-~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~~~~  311 (316)
                      |++++||+++|+|+++++++++.+++|||++|||++++|+.++++ .|  +++|++|+|+  |.++|++++++++++...
T Consensus       472 t~~~~dG~~~G~d~~li~~l~~~~~iPVIasGGi~s~~d~~~~~~~~G--~~gvivg~a~--~~~~~~~~e~~~~l~~~g  547 (555)
T 1jvn_A          472 NCIDKDGSNSGYDLELIEHVKDAVKIPVIASSGAGVPEHFEEAFLKTR--ADACLGAGMF--HRGEFTVNDVKEYLLEHG  547 (555)
T ss_dssp             CCGGGTTTCSCCCHHHHHHHHHHCSSCEEECSCCCSHHHHHHHHHHSC--CSEEEESHHH--HTTSCCHHHHHHHHHHTT
T ss_pred             eCCCCCCCCCCCCHHHHHHHHHhCCccEEEECCCCCHHHHHHHHHhcC--ChHHHHHHHH--HcCCCCHHHHHHHHHHCC
Confidence            999999999999999999999999999999999999999999998 56  9999999999  999999999999987754

>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A

Probab=100.00  E-value=6.2e-40  Score=297.83  Aligned_cols=232  Identities=20%  Similarity=0.306  Sum_probs=194.6

Q ss_pred             cccEEEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCCc---ccHHHHHHH
Q 021156           52 CAVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADP---LSKAAAIEA  128 (316)
Q Consensus        52 ~~~~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~~---~~~~~i~~~  128 (316)
                      ++|+|||+||+++|+|||+++|+|++.        +.|   +||.++++.|.++|++++|+.|+|+..   .....+.++
T Consensus         2 ~~m~iip~idl~~g~~V~~~~g~~~~~--------~~~---~d~~~~a~~~~~~Gad~i~v~~~d~~~~~~~~~~~i~~i   70 (244)
T 1vzw_A            2 SKLELLPAVDVRDGQAVRLVHGESGTE--------TSY---GSPLEAALAWQRSGAEWLHLVDLDAAFGTGDNRALIAEV   70 (244)
T ss_dssp             CCCEEEEEEEEETTEEBC--------C--------CBC---CCHHHHHHHHHHTTCSEEEEEEHHHHHTSCCCHHHHHHH
T ss_pred             CceEEEEEEEEECCEEEEeeccccccc--------eec---CCHHHHHHHHHHcCCCEEEEecCchhhcCCChHHHHHHH
Confidence            579999999999999999999987532        334   389999999999999999999998642   223444444


Q ss_pred             HHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCc
Q 021156          129 LHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRW  207 (316)
Q Consensus       129 v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw  207 (316)
                      .+.+++|++++|||+ .++++.++++|||.|++|++.+.+    |+++.++.+.+| +++++++|++  +|  .|.++||
T Consensus        71 ~~~~~ipv~v~ggI~~~~~~~~~l~~Gad~V~lg~~~l~~----p~~~~~~~~~~g-~~~~~~l~~~--~g--~v~~~g~  141 (244)
T 1vzw_A           71 AQAMDIKVELSGGIRDDDTLAAALATGCTRVNLGTAALET----PEWVAKVIAEHG-DKIAVGLDVR--GT--TLRGRGW  141 (244)
T ss_dssp             HHHCSSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHC----HHHHHHHHHHHG-GGEEEEEEEE--TT--EECCSSS
T ss_pred             HHhcCCcEEEECCcCCHHHHHHHHHcCCCEEEECchHhhC----HHHHHHHHHHcC-CcEEEEEEcc--CC--EEEEcCc
Confidence            456899999999998 589999999999999999999997    999999999998 8999999998  66  6889999


Q ss_pred             ceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHh---CCCcCE
Q 021156          208 QKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVA---GIGRVD  284 (316)
Q Consensus       208 ~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~---G~g~~g  284 (316)
                      .+.+. ++.++++.+++.|++.+++|+++++|+.+|+|++.++++++.+++||+++|||++++|+.++++.   |  +++
T Consensus       142 ~~~~~-~~~e~~~~~~~~G~~~i~~~~~~~~~~~~g~~~~~~~~i~~~~~ipvia~GGI~~~~d~~~~~~~~~~G--adg  218 (244)
T 1vzw_A          142 TRDGG-DLYETLDRLNKEGCARYVVTDIAKDGTLQGPNLELLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPAG--VEG  218 (244)
T ss_dssp             CCCCC-BHHHHHHHHHHTTCCCEEEEEC-------CCCHHHHHHHHHTCSSCEEEESCCCSHHHHHHHHTTGGGT--EEE
T ss_pred             ccCCC-CHHHHHHHHHhCCCCEEEEeccCcccccCCCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhccCC--Cce
Confidence            98777 88999999999999999999999999999999999999999889999999999999999999998   8  999


Q ss_pred             EEEccchhhccCcccHHHHHHHHH
Q 021156          285 VTVGSALDIFGGNLAYKDVVAWHA  308 (316)
Q Consensus       285 VivG~Al~~~~g~~~~~~~~~~~~  308 (316)
                      |++|+|+  |.+++++++++++++
T Consensus       219 v~vG~al--~~~~~~~~~~~~~~~  240 (244)
T 1vzw_A          219 AIVGKAL--YAKAFTLEEALEATS  240 (244)
T ss_dssp             EEECHHH--HTTSSCHHHHHHHHC
T ss_pred             eeeeHHH--HcCCCCHHHHHHHhc
Confidence            9999999  999999999988763

>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*

Probab=100.00  E-value=2.8e-39  Score=293.04  Aligned_cols=234  Identities=20%  Similarity=0.291  Sum_probs=206.6

Q ss_pred             ccEEEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCCc---ccHHHHHHHH
Q 021156           53 AVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADP---LSKAAAIEAL  129 (316)
Q Consensus        53 ~~~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~~---~~~~~i~~~v  129 (316)
                      .|+|||||||++|+|||+++|+|++        .+.+   +||.++|+.|.+.|++++|+.|+|+..   .....+.++.
T Consensus         2 ~m~iip~id~~~g~~V~~~~g~~~~--------~~~~---~d~~~~a~~~~~~Gad~i~v~~~d~~~~~~~~~~~i~~i~   70 (244)
T 2y88_A            2 PLILLPAVNVVEGRAVRLVQGKAGS--------QTEY---GSAVDAALGWQRDGAEWIHLVDLDAAFGRGSNHELLAEVV   70 (244)
T ss_dssp             CCEEEEEEEEETTEEEEEETTEEEE--------EEEE---EEHHHHHHHHHHTTCSEEEEEEHHHHTTSCCCHHHHHHHH
T ss_pred             ceEEEEEEEeECCEEEEeecccccc--------ceec---CCHHHHHHHHHHcCCCEEEEEcCcccccCCChHHHHHHHH
Confidence            3899999999999999999998752        2444   389999999999999999999998642   2334444444


Q ss_pred             HhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcc
Q 021156          130 HAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQ  208 (316)
Q Consensus       130 ~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~  208 (316)
                      +.+++|++++|||+ .++++.++++|||.|++|++.+.+    |+++.++.+.+| +++++++|++.+.+.+.|.++||.
T Consensus        71 ~~~~ipv~v~ggi~~~~~~~~~l~~Gad~V~lg~~~l~~----p~~~~~~~~~~g-~~~~~~ld~~~~~~~~~v~~~g~~  145 (244)
T 2y88_A           71 GKLDVQVELSGGIRDDESLAAALATGCARVNVGTAALEN----PQWCARVIGEHG-DQVAVGLDVQIIDGEHRLRGRGWE  145 (244)
T ss_dssp             HHCSSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHC----HHHHHHHHHHHG-GGEEEEEEEEEETTEEEEEEGGGT
T ss_pred             HhcCCcEEEECCCCCHHHHHHHHHcCCCEEEECchHhhC----hHHHHHHHHHcC-CCEEEEEeccccCCCCEEEECCcc
Confidence            56899999999998 589999999999999999999997    999999999998 789999998632223479999999


Q ss_pred             eecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHh---CCCcCEE
Q 021156          209 KFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVA---GIGRVDV  285 (316)
Q Consensus       209 ~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~---G~g~~gV  285 (316)
                      +.+. ++.++++.+++.|++.+++|+++++|+++|+|++.++++++.+++|||++|||++.+|+.++++.   |  +++|
T Consensus       146 ~~~~-~~~e~~~~~~~~G~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~~~~G--ad~v  222 (244)
T 2y88_A          146 TDGG-DLWDVLERLDSEGCSRFVVTDITKDGTLGGPNLDLLAGVADRTDAPVIASGGVSSLDDLRAIATLTHRG--VEGA  222 (244)
T ss_dssp             EEEE-EHHHHHHHHHHTTCCCEEEEETTTTTTTSCCCHHHHHHHHTTCSSCEEEESCCCSHHHHHHHHTTGGGT--EEEE
T ss_pred             CCCC-CHHHHHHHHHhCCCCEEEEEecCCccccCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHhhccCC--CCEE
Confidence            8777 88999999999999999999999999999999999999998889999999999999999999998   8  9999


Q ss_pred             EEccchhhccCcccHHHHHHHH
Q 021156          286 TVGSALDIFGGNLAYKDVVAWH  307 (316)
Q Consensus       286 ivG~Al~~~~g~~~~~~~~~~~  307 (316)
                      ++|+++  |.+++.++++++++
T Consensus       223 ~vG~al--~~~~~~~~~~~~~~  242 (244)
T 2y88_A          223 IVGKAL--YARRFTLPQALAAV  242 (244)
T ss_dssp             EECHHH--HTTSSCHHHHHHHT
T ss_pred             EEcHHH--HCCCcCHHHHHHHh
Confidence            999999  99999999998764

>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A

Probab=100.00  E-value=3.3e-39  Score=292.87  Aligned_cols=231  Identities=21%  Similarity=0.294  Sum_probs=205.4

Q ss_pred             cEEEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCC----cccHHHHHHHH
Q 021156           54 VRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGAD----PLSKAAAIEAL  129 (316)
Q Consensus        54 ~~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~----~~~~~~i~~~v  129 (316)
                      |+|||+||+++|+|||+++|+|++        .+.|  ..+|.++|+.|.+.|++.+|+.|+++.    ..+...+.++.
T Consensus         1 m~iip~id~~~g~~vk~~~G~~~~--------~~~~--~~~~~~~a~~~~~~Gad~i~v~d~~~~~~~~~~~~~~i~~i~   70 (241)
T 1qo2_A            1 MLVVPAIDLFRGKVARMIKGRKEN--------TIFY--EKDPVELVEKLIEEGFTLIHVVDLSNAIENSGENLPVLEKLS   70 (241)
T ss_dssp             CEEEEEEEEETTEEEEEGGGCGGG--------EEEE--SSCHHHHHHHHHHTTCCCEEEEEHHHHHHCCCTTHHHHHHGG
T ss_pred             CEEEEEEEeeCCEEEEEecccccc--------ceec--CcCHHHHHHHHHHcCCCEEEEecccccccCCchhHHHHHHHH
Confidence            789999999999999999987652        2335  358999999999999999999999864    23444444444


Q ss_pred             HhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcc
Q 021156          130 HAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQ  208 (316)
Q Consensus       130 ~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~  208 (316)
                       .+++|++++|||+ .++++.++++|||.|++|+..+.+    |+++.++ +.+| +++++++|++  +|  .|.++||.
T Consensus        71 -~~~ipvi~~Ggi~~~~~~~~~~~~Gad~V~lg~~~l~~----p~~~~~~-~~~g-~~i~~~~d~~--~~--~v~~~g~~  139 (241)
T 1qo2_A           71 -EFAEHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLED----PSFLKSL-REID-VEPVFSLDTR--GG--RVAFKGWL  139 (241)
T ss_dssp             -GGGGGEEEESSCCSHHHHHHHHHTTCCEEEECHHHHHC----TTHHHHH-HTTT-CEEEEEEEEE--TT--EECCTTCS
T ss_pred             -hcCCcEEEECCCCCHHHHHHHHHCCCCEEEECchHhhC----hHHHHHH-HHcC-CcEEEEEEec--CC--EEEECCce
Confidence             6689999999999 599999999999999999999997    9999999 9998 8999999998  66  68899999


Q ss_pred             eecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhC---CC-cCE
Q 021156          209 KFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAG---IG-RVD  284 (316)
Q Consensus       209 ~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G---~g-~~g  284 (316)
                      +.++.++.++++++.+.|++.+++|+++++|+..|+|+++++++++.+++|||++|||++++|+.++++.+   .| ++|
T Consensus       140 ~~~~~~~~e~~~~~~~~G~~~i~~t~~~~~g~~~g~~~~~i~~l~~~~~iPvia~GGI~~~~d~~~~~~~~~~~~G~adg  219 (241)
T 1qo2_A          140 AEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQEHDFSLTKKIAIEAEVKVLAAGGISSENSLKTAQKVHTETNGLLKG  219 (241)
T ss_dssp             SCSCCCHHHHHHHHHTTTCCEEEEEETTHHHHTCCCCHHHHHHHHHHHTCEEEEESSCCSHHHHHHHHHHHHHTTTSEEE
T ss_pred             ecCCCCHHHHHHHHHhCCCCEEEEEeecccccCCcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHhcccccCCeEeE
Confidence            88888899999999999999999999999999999999999999998899999999999999999999881   24 799


Q ss_pred             EEEccchhhccCcccHHHHHHHH
Q 021156          285 VTVGSALDIFGGNLAYKDVVAWH  307 (316)
Q Consensus       285 VivG~Al~~~~g~~~~~~~~~~~  307 (316)
                      |+||+|+  |.++++++++++++
T Consensus       220 v~vgsal--~~~~~~~~~~~~~~  240 (241)
T 1qo2_A          220 VIVGRAF--LEGILTVEVMKRYA  240 (241)
T ss_dssp             EEECHHH--HTTSSCHHHHHHHH
T ss_pred             EEeeHHH--HcCCCCHHHHHHHh
Confidence            9999999  99999999998875

>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A

Probab=100.00  E-value=2.8e-38  Score=287.96  Aligned_cols=239  Identities=20%  Similarity=0.336  Sum_probs=209.3

Q ss_pred             cccEEEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCCcc---cHHHHHHH
Q 021156           52 CAVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADPL---SKAAAIEA  128 (316)
Q Consensus        52 ~~~~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~~~---~~~~i~~~  128 (316)
                      ++.+|||+||+++|+|||++++  +        ..+ +  ..||.++|+.|.++|++.+|+.|+++...   .....++.
T Consensus         2 ~~~~iip~id~~~g~~v~~~~~--~--------~~~-~--~~d~~~~a~~~~~~Gad~i~v~d~~~~~~~~~~~~~~i~~   68 (253)
T 1thf_D            2 LAKRIIACLDVKDGRVVKGSNF--E--------NLR-D--SGDPVELGKFYSEIGIDELVFLDITASVEKRKTMLELVEK   68 (253)
T ss_dssp             CCCEEEEEEEEETTEECCCSCC--T--------TSS-C--TTCHHHHHHHHHHTTCCEEEEEESSCSSSHHHHHHHHHHH
T ss_pred             CCCeEEEEEEEECCEEEEeecc--c--------cee-e--ccCHHHHHHHHHHcCCCEEEEECCchhhcCCcccHHHHHH
Confidence            3568999999999999997653  1        112 3  35899999999999999999999997632   22233333


Q ss_pred             H-HhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCC
Q 021156          129 L-HAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDR  206 (316)
Q Consensus       129 v-~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~g  206 (316)
                      + +.+++|++++|||+ .++++.++++|||.|++|++.+.+    |+++.++.+.+|++++++++|++.++|+|.|.+++
T Consensus        69 i~~~~~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg~~~l~~----p~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~~g  144 (253)
T 1thf_D           69 VAEQIDIPFTVGGGIHDFETASELILRGADKVSINTAAVEN----PSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYS  144 (253)
T ss_dssp             HHTTCCSCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHHC----THHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETT
T ss_pred             HHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEChHHHhC----hHHHHHHHHHcCCCcEEEEEEEEccCCcEEEEECC
Confidence            4 45789999999999 599999999999999999999997    99999999999888899999997545667899999


Q ss_pred             cceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEE
Q 021156          207 WQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVT  286 (316)
Q Consensus       207 w~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVi  286 (316)
                      |.+.+..++.++++++.+.|++.+++|+++++|+.+|+|+++++++++.+++||+++|||++.+|+.++++.|  +++|+
T Consensus       145 ~~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~G--adgv~  222 (253)
T 1thf_D          145 GKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAG--ADAAL  222 (253)
T ss_dssp             TTEEEEEEHHHHHHHHHHTTCSEEEEEETTTTTSCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTT--CSEEE
T ss_pred             CccccCCCHHHHHHHHHHCCCCEEEEEeccCCCCCCCCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcC--ChHHH
Confidence            9987777889999999999999999999999999999999999999988899999999999999999999987  99999


Q ss_pred             EccchhhccCcccHHHHHHHHHhhc
Q 021156          287 VGSALDIFGGNLAYKDVVAWHAQQE  311 (316)
Q Consensus       287 vG~Al~~~~g~~~~~~~~~~~~~~~  311 (316)
                      +|+|+  |.+++++++++++++++.
T Consensus       223 vGsal--~~~~~~~~~~~~~l~~~g  245 (253)
T 1thf_D          223 AASVF--HFREIDVRELKEYLKKHG  245 (253)
T ss_dssp             ESHHH--HTTCSCHHHHHHHHHHTT
T ss_pred             HHHHH--HcCCCCHHHHHHHHHHcC
Confidence            99999  999999999999887755

>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1

Probab=100.00  E-value=5.1e-38  Score=286.07  Aligned_cols=240  Identities=22%  Similarity=0.251  Sum_probs=209.3

Q ss_pred             ccccEEEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCCcc----cHHHHH
Q 021156           51 RCAVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADPL----SKAAAI  126 (316)
Q Consensus        51 ~~~~~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~~~----~~~~i~  126 (316)
                      .++++|||+||+++|+|||+++++       ++   + +  +.+|.++|+.+.+.|++.+|+.|+++...    +...+.
T Consensus         2 ~~~~~iip~id~~~g~~v~~~~~~-------~~---~-~--~~d~~~~a~~~~~~Gad~i~v~d~~~~~~~~~~~~~~i~   68 (252)
T 1ka9_F            2 SLAKRIVPCLDVHAGRVVKGVNFV-------NL---R-D--AGDPVEAARAYDEAGADELVFLDISATHEERAILLDVVA   68 (252)
T ss_dssp             CCCBEEEEEEEEETTEETTCCCSS-------CC---S-S--TTCHHHHHHHHHHHTCSCEEEEECCSSTTCHHHHHHHHH
T ss_pred             CCCceEEEEEEEECCEEEEeeccc-------Cc---e-e--cCCHHHHHHHHHHcCCCEEEEEcCCccccCccccHHHHH
Confidence            346799999999999999866421       11   1 2  35899999999999999999999996531    223344


Q ss_pred             HHHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeC
Q 021156          127 EALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTD  205 (316)
Q Consensus       127 ~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~  205 (316)
                      ++.+.+++|++++|||+ .++++.++++|||.|++|+..+.+    |+++.++.+.+|.+++.+++|++...|+|.+.++
T Consensus        69 ~i~~~~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg~~~l~~----p~~~~~~~~~~~~~~i~~~~~~~~~~g~~~v~~~  144 (252)
T 1ka9_F           69 RVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAVRR----PELIRELADHFGAQAVVLAIDARWRGDFPEVHVA  144 (252)
T ss_dssp             HHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHC----THHHHHHHHHHCGGGEEEEEEEEEETTEEEEEET
T ss_pred             HHHHhCCCCEEEECCcCCHHHHHHHHHcCCCEEEEChHHHhC----cHHHHHHHHHcCCCcEEEEEEEecCCCCEEEEEC
Confidence            44446789999999999 599999999999999999999997    9999999999987889999999731266789999


Q ss_pred             CcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEE
Q 021156          206 RWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDV  285 (316)
Q Consensus       206 gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gV  285 (316)
                      ||.+.+..++.++++++.+.|++.+++|+++++|+..|+|+++++++++.+++||+++|||++++|+.++++.|  +++|
T Consensus       145 g~~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~i~~l~~~~~ipvia~GGI~~~~d~~~~~~~G--adgv  222 (252)
T 1ka9_F          145 GGRVPTGLHAVEWAVKGVELGAGEILLTSMDRDGTKEGYDLRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQAG--AEAA  222 (252)
T ss_dssp             TTTEEEEEEHHHHHHHHHHHTCCEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTT--CSEE
T ss_pred             CCccccCCcHHHHHHHHHHcCCCEEEEecccCCCCcCCCCHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHCC--CHHH
Confidence            99987777889999999999999999999999999999999999999998999999999999999999999877  9999


Q ss_pred             EEccchhhccCcccHHHHHHHHHhhc
Q 021156          286 TVGSALDIFGGNLAYKDVVAWHAQQE  311 (316)
Q Consensus       286 ivG~Al~~~~g~~~~~~~~~~~~~~~  311 (316)
                      ++|+|+  |.+++++++++++++.+.
T Consensus       223 ~vgsal--~~~~~~~~~~~~~l~~~~  246 (252)
T 1ka9_F          223 LAASVF--HFGEIPIPKLKRYLAEKG  246 (252)
T ss_dssp             EESHHH--HTTSSCHHHHHHHHHHTT
T ss_pred             HHHHHH--HcCCCCHHHHHHHHHHCC
Confidence            999999  999999999999887754

>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}

Probab=100.00  E-value=1.5e-35  Score=272.09  Aligned_cols=235  Identities=17%  Similarity=0.258  Sum_probs=187.1

Q ss_pred             EEEEEEEeeC--C-eEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCCc----ccHHHHHH
Q 021156           55 RFRPCIDIHK--G-KVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADP----LSKAAAIE  127 (316)
Q Consensus        55 ~iIP~IDi~~--G-~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~~----~~~~~i~~  127 (316)
                      +|||+||+++  | ++|++.+|++            .+  +.+|.++|+.+.+.|++.+++.|+++..    .+...+.+
T Consensus         3 ~ii~~iD~~~~~g~~~v~~~~g~~------------~~--~~~~~~~a~~~~~~Ga~~i~v~d~~~~~~~~g~~~~~i~~   68 (266)
T 2w6r_A            3 RVVVAIDAKRVDGEFMVFTHSGKK------------NT--GILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRF   68 (266)
T ss_dssp             EEEEEEEEEEETTEEEEEETTTTE------------EE--EEEHHHHHHHHHHHTCSEEEEEETTTSSCSSCCCHHHHHH
T ss_pred             eEEEEEEEEcCCCCEEEEEcCCee------------cc--CCCHHHHHHHHHHCCCCEEEEEecCcccCCCcccHHHHHH
Confidence            4999999994  7 8999987742            11  2479999999999999999999998642    33444445


Q ss_pred             HHHhCCCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeee-c--CCCCCHHHHHHHHHHhc--CceEEEeeeeeecCCeeE
Q 021156          128 ALHAYPGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVF-N--NGQMDLERLKDLVRVVG--KQRLVLDLSCRKKDGKYA  201 (316)
Q Consensus       128 ~v~~~~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~-~--~~~~~~eli~ei~~~~G--~~~IvvslD~k~~~g~~~  201 (316)
                      +.+.+++|++++|||++ ++++.++++|||.|++|+..+ .  +    |+.++++.+.+|  .+++++++|++..+|.|.
T Consensus        69 i~~~~~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg~~~~~~~~~----~~~~~~~~~~~g~~~~~i~~~~d~~~~~g~~~  144 (266)
T 2w6r_A           69 VRPLTTLPIIASGGAGKMEHFLEAFLAGADKALAASVFHFREID----MRELKEYLKKHGGSGQAVVVAIDAKRVDGEFM  144 (266)
T ss_dssp             HGGGCCSCEEEESCCCSTHHHHHHHHHTCSEEECCCCC----------CHHHHHHCC----CCCEEEEEEEEEEETTEEE
T ss_pred             HHHhcCCCEEEECCCCCHHHHHHHHHcCCcHhhhhHHHHhCCCC----HHHHHHHHHHcCCCCCEEEEEEEEEecCCCEE
Confidence            44568999999999995 999999999999999999998 4  5    899999999998  689999999975456678


Q ss_pred             EEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCC
Q 021156          202 IVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIG  281 (316)
Q Consensus       202 v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g  281 (316)
                      |.+++|.+.++.++.++++.+.+.|++.+++|+++++|+..|+|+++++++++.+++|||++|||++++|+.++++.|  
T Consensus       145 v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~t~~~~~g~~~g~~~~~i~~l~~~~~ipvia~GGI~~~ed~~~~~~~G--  222 (266)
T 2w6r_A          145 VFTHSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAG--  222 (266)
T ss_dssp             EEETTTTEEEEEEHHHHHHHHHHTTCSEEEEEETTTTTTCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHT--
T ss_pred             EEECCCceecchhHHHHHHHHHHcCCCEEEEEeecCCCCcCCCCHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcC--
Confidence            999999987777889999999999999999999999999999999999999999999999999999999999999988  


Q ss_pred             cCEEEEccchhhccCcccHHHHHHHHHhhc
Q 021156          282 RVDVTVGSALDIFGGNLAYKDVVAWHAQQE  311 (316)
Q Consensus       282 ~~gVivG~Al~~~~g~~~~~~~~~~~~~~~  311 (316)
                      +++|+||+|+  |.++++++++++++..+.
T Consensus       223 adgv~vgsal--~~~~~~~~~~~~~l~~~g  250 (266)
T 2w6r_A          223 ADAALAASVF--HFREIDMRELKEYLKKHG  250 (266)
T ss_dssp             CSEEEESTTT--C-----------------
T ss_pred             CHHHHccHHH--HcCCCCHHHHHHHHHHCC
Confidence            9999999999  999999999999877654

>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1

Probab=100.00  E-value=2.5e-32  Score=246.61  Aligned_cols=239  Identities=22%  Similarity=0.265  Sum_probs=203.1

Q ss_pred             cccEEEEEEEeeCC--eEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCCcc----cHHHH
Q 021156           52 CAVRFRPCIDIHKG--KVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADPL----SKAAA  125 (316)
Q Consensus        52 ~~~~iIP~IDi~~G--~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~~~----~~~~i  125 (316)
                      +.++|||+||+++|  ++|+...+           ....+  ..++.++++.+.+.|++.+|+.|+++...    +...+
T Consensus         3 ~~~~iip~id~~~g~~~~v~g~~~-----------~~~~~--~~~~~~~a~~~~~~G~d~i~v~~~~~~~~~~~~~~~~i   69 (253)
T 1h5y_A            3 MALRIIPCLDIDGGAKVVVKGVNF-----------QGIRE--VGDPVEMAVRYEEEGADEIAILDITAAPEGRATFIDSV   69 (253)
T ss_dssp             CBCEEEEEEEECGGGCEECTTCCC-----------HHHHE--EECHHHHHHHHHHTTCSCEEEEECCCCTTTHHHHHHHH
T ss_pred             CccEEEEEEEEcCCceEEEEcccc-----------cceee--cccHHHHHHHHHHcCCCEEEEEeCCccccCCcccHHHH
Confidence            56899999999999  99953221           01122  35899999999999999999999987532    22333


Q ss_pred             HHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEe
Q 021156          126 IEALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVT  204 (316)
Q Consensus       126 ~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~  204 (316)
                      .++.+.+++|++++||++ .++++.++++|||.|.+++..+.+    |+++.++.+.+|.+++.+++|++...|.+.+.+
T Consensus        70 ~~i~~~~~ipvi~~g~i~~~~~~~~~~~~Gad~V~i~~~~~~~----~~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~  145 (253)
T 1h5y_A           70 KRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSVNTAAVRN----PQLVALLAREFGSQSTVVAIDAKWNGEYYEVYV  145 (253)
T ss_dssp             HHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHC----THHHHHHHHHHCGGGEEEEEEEEECSSSEEEEE
T ss_pred             HHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEChHHhhC----cHHHHHHHHHcCCCcEEEEEEeecCCCcEEEEE
Confidence            333346789999999998 599999999999999999999987    999999999998788999999962103357899


Q ss_pred             CCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCE
Q 021156          205 DRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVD  284 (316)
Q Consensus       205 ~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~g  284 (316)
                      ++|.+.+..++.+.++.+.+.|++.+++|+++.+|+.+|++++.++++++.+++|++++|||++.+|+.++++.|  +++
T Consensus       146 ~~~~~~~~~~~~e~~~~~~~~G~d~i~~~~~~~~g~~~~~~~~~i~~l~~~~~~pvia~GGi~~~~~~~~~~~~G--a~~  223 (253)
T 1h5y_A          146 KGGREATGLDAVKWAKEVEELGAGEILLTSIDRDGTGLGYDVELIRRVADSVRIPVIASGGAGRVEHFYEAAAAG--ADA  223 (253)
T ss_dssp             TTTTEEEEEEHHHHHHHHHHHTCSEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTT--CSE
T ss_pred             eCCeecCCCCHHHHHHHHHhCCCCEEEEecccCCCCcCcCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcC--CcH
Confidence            999876666788999999999999999999999999999999999999988899999999999999999999888  999


Q ss_pred             EEEccchhhccCcccHHHHHHHHHhhc
Q 021156          285 VTVGSALDIFGGNLAYKDVVAWHAQQE  311 (316)
Q Consensus       285 VivG~Al~~~~g~~~~~~~~~~~~~~~  311 (316)
                      |++|+++  |.+.++++++.+++++..
T Consensus       224 v~vgsal--~~~~~~~~~~~~~l~~~g  248 (253)
T 1h5y_A          224 VLAASLF--HFRVLSIAQVKRYLKERG  248 (253)
T ss_dssp             EEESHHH--HTTSSCHHHHHHHHHHTT
T ss_pred             HHHHHHH--HcCCCCHHHHHHHHHHcC
Confidence            9999999  999999999999987754

>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A

Probab=99.84  E-value=2.5e-19  Score=158.41  Aligned_cols=209  Identities=18%  Similarity=0.277  Sum_probs=174.8

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHH----hCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCC
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALH----AYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNG  168 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~----~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~  168 (316)
                      .++.+..+.+.+.+++ ++++|++....+-..+.+.++    ..++|++++++. .+++.++++.||+.+++....++. 
T Consensus        12 ~~~~~a~~~~~~~~~d-lvl~D~~~p~~~g~~~~~~l~~~~~~~~i~vi~~~~~-~~~~~~~~~~Ga~~~l~kp~~~~~-   88 (237)
T 3cwo_X           12 TNGREAVEKYKELKPD-IVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQ-QAMVIEAIKAGAKDFIVNTAAVEN-   88 (237)
T ss_dssp             CSSSTTHHHHHHHCCS-CEEEECCSTTSSHHHHHHHHHHHSSSCCEEEECCSST-HHHHHHHHHTTCCEEEESHHHHHC-
T ss_pred             CCHHHHHHHHHhcCCC-EEEEeCCCCCCCHHHHHHHHHHhCCCCCEEEEECCCC-HHHHHHHHHCCHHheEeCCcccCh-
Confidence            3566666777777787 999999865434344445543    245788887776 677899999999999988765665 


Q ss_pred             CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHH
Q 021156          169 QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDEL  248 (316)
Q Consensus       169 ~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~el  248 (316)
                         ++++..+.+.++.+++++.+|.+..++.+.+...+|...+..++.++++.+...++..+++++++.+|++.|++++.
T Consensus        89 ---~~l~~~i~~~~~~~~~~~~~d~~~~~~~~~v~~~~g~~~~~~~~~~~i~~~~~~~~~~vli~~~~~~g~~~g~~~~~  165 (237)
T 3cwo_X           89 ---PSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEM  165 (237)
T ss_dssp             ---THHHHHHHHHHTGGGEEEEEEEEESSSCEEEEETTTTEEEEEEHHHHHHHHHHHTCSEEEEEETTTTTCCSCCCHHH
T ss_pred             ---HHHHHHHHHHhCCCceEEEeeecccCCcEEEEEeCCccccccCHHHHHHHHhhcCCCeEEEEecCCCCccccccHHH
Confidence               78999999999888899999976433445778888887777789999999999999999999999999999999999


Q ss_pred             HHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHHhhc
Q 021156          249 VALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQQE  311 (316)
Q Consensus       249 i~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~~~~  311 (316)
                      ++++.+..++|+|+.||+.+++++.++++.|  ++++++|+|+  |.++++++++++++++..
T Consensus       166 i~~~~~~~~~Pvia~~g~~~~~~~~~~~~~G--~~~~~vg~a~--~~~~~~~~~~~~~l~~~~  224 (237)
T 3cwo_X          166 IRFVRPLTTLPIIASGGAGKMEHFLEAFLAG--ADAALAASVF--HFREIDVRELKEYLKKHG  224 (237)
T ss_dssp             HHHHGGGCCSCEEEESCCCSHHHHHHHHHHT--CSEEEESHHH--HTTSSCHHHHHHHHHTTT
T ss_pred             HHHHHHhcCCCEEecCCCCCHHHHHHHHHcC--cHHHhhhHHH--HcCCCCHHHHHHHHHHCC
Confidence            9999988899999999999999999999988  9999999999  999999999999887644

>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A

Probab=99.76  E-value=4.9e-18  Score=154.10  Aligned_cols=122  Identities=20%  Similarity=0.366  Sum_probs=109.0

Q ss_pred             HHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCc
Q 021156          180 RVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIP  259 (316)
Q Consensus       180 ~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iP  259 (316)
                      .+||+|+|+++||+|.++|+|.|++++|.+.++.++.++++.+++.|++.+.+++++++++..|+++++++++++.+++|
T Consensus         2 ~~~g~~~iv~~iD~~~~~g~~~v~~~~~~~~~~~~~~~~a~~~~~~G~~~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ip   81 (247)
T 3tdn_A            2 SESSSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLP   81 (247)
T ss_dssp             ----CTTCEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTTCSEEEEEETTTTTCSSCCCHHHHHHHGGGCCSC
T ss_pred             CccCceeEEEEEEEEecCCcEEEEEcCCeecCCCCHHHHHHHHHHcCCCEEEEEecCcccCCCcccHHHHHHHHHhCCCC
Confidence            36899999999999866788999999999988889999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156          260 VTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVA  305 (316)
Q Consensus       260 VIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~  305 (316)
                      |+++|||++++|+.++++.|  +++|++|+++  +.++..+.++.+
T Consensus        82 vi~~Ggi~~~~~~~~~l~~G--ad~V~ig~~~--l~dp~~~~~~~~  123 (247)
T 3tdn_A           82 IIASGGAGKMEHFLEAFLRG--ADKVSINTAA--VENPSLITQIAQ  123 (247)
T ss_dssp             EEEESCCCSHHHHHHHHHTT--CSEECCSHHH--HHCTHHHHHHHH
T ss_pred             EEEeCCCCCHHHHHHHHHcC--CCeeehhhHH--hhChHHHHHHHH
Confidence            99999999999999999998  9999999999  887765555544

>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*

Probab=99.76  E-value=3.2e-19  Score=163.73  Aligned_cols=141  Identities=11%  Similarity=0.061  Sum_probs=108.1

Q ss_pred             CceeeecCCCCCCcccc--ccccccCcc--cccccccEEEEE--EEeeCCeEEEEEcccccCCCCCCCceeeecCCccCH
Q 021156           22 SDLFWLHKNNNSSFYAP--SSSLSRPSR--LSVRCAVRFRPC--IDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSA   95 (316)
Q Consensus        22 ~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~iIP~--IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p   95 (316)
                      .-+|++++|||.|++|+  |+. ++|.+  .-++.. ++||+  ||+++|+  +  +.+|..        ...   .++|
T Consensus       121 l~psvlNs~n~~~i~g~~~~~~-aa~~v~~~~~~~g-e~ip~gYL~v~~g~--k--~V~fv~--------~~~---~~~~  183 (286)
T 3vk5_A          121 LLPALLGSGDDYFVWKSFLETL-AAFPGRIPREEWP-ELLLTVALTFGEDP--R--TGDLLG--------TVP---VSTA  183 (286)
T ss_dssp             EEEEETTBSSHHHHTHHHHHHH-HHCSTTSCGGGCC-EEEEEEEEECSCCH--H--HHHHHC--------BCC---CCCS
T ss_pred             EEEEEecCCCcccccCcHHHHH-HhHHHHHHHHHhC-CcceEEEEEECCCC--c--eeeeeC--------CCC---CCCH
Confidence            45899999999999999  999 88873  015555 99999  9999996  2  333321        011   2466


Q ss_pred             HHHH--HHHHHcC-CCcceEEEecCC-cccHHHHHHHH-HhC--CCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeeecC
Q 021156           96 AEFA--NLYKEDG-LTGGHAIMLGAD-PLSKAAAIEAL-HAY--PGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFNN  167 (316)
Q Consensus        96 ~e~a--~~~~~~G-~~~l~lvDLda~-~~~~~~i~~~v-~~~--~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~~~  167 (316)
                       ++|  +.|+.+| ..++|+||||++ ...+..+++.+ +.+  ++|+++|||||+ |++++++++|||+|++||++.+|
T Consensus       184 -e~A~~~aYa~~gad~G~~lV~LD~~~~~v~~e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGSAav~d  262 (286)
T 3vk5_A          184 -STEEIDRYLHVARAFGFHMVYLYSRNEHVPPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAGALEQP  262 (286)
T ss_dssp             -SSHHHHHHHHHHHHTTCSEEEEECSSSCCCHHHHHHHHHHSCTTCEEEEESSCCSHHHHHHHHHTTCSEEEESGGGSST
T ss_pred             -HHHHHHHHHHHHHHcCCCEEEEcCCCCcCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECchhhcC
Confidence             788  8899887 558899999975 34444555555 457  899999999995 99999999999999999999984


Q ss_pred             CCCCHHHHHHHHHHh
Q 021156          168 GQMDLERLKDLVRVV  182 (316)
Q Consensus       168 ~~~~~eli~ei~~~~  182 (316)
                      +  .|+++++++.+|
T Consensus       263 ~--~Pelv~e~a~~~  275 (286)
T 3vk5_A          263 D--WRSALAEIAGRR  275 (286)
T ss_dssp             T--HHHHHHHHHC--
T ss_pred             C--CHHHHHHHHHhC
Confidence            2  179999999877

>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0

Probab=99.73  E-value=4.3e-17  Score=147.27  Aligned_cols=172  Identities=17%  Similarity=0.085  Sum_probs=129.5

Q ss_pred             eecCCccCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHhCCCcEEEe------cC--C---C-HHHHHHHHHcC
Q 021156           87 TNFESDKSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAYPGGLQVG------GG--I---N-SDNSLSYIEEG  154 (316)
Q Consensus        87 ~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~~~pl~vG------GG--I---r-~e~~~~~l~~G  154 (316)
                      .++.+..+|.++|+.|.+.|+.++.+       .+...+.++.+.+++|+ +|      ||  +   + .++++.++++|
T Consensus        30 ~pl~~~~~~~~~A~a~~~~Ga~~i~~-------~~~~~i~~ir~~v~~Pv-ig~~k~d~~~~~~~I~~~~~~i~~~~~~G  101 (232)
T 3igs_A           30 SPLDKPEIVAAMALAAEQAGAVAVRI-------EGIDNLRMTRSLVSVPI-IGIIKRDLDESPVRITPFLDDVDALAQAG  101 (232)
T ss_dssp             CTTCSHHHHHHHHHHHHHTTCSEEEE-------ESHHHHHHHHTTCCSCE-EEECBCCCSSCCCCBSCSHHHHHHHHHHT
T ss_pred             CCCCCcchHHHHHHHHHHCCCeEEEE-------CCHHHHHHHHHhcCCCE-EEEEeecCCCcceEeCccHHHHHHHHHcC
Confidence            44444457889999999999887665       13344444444688998 44      44  3   3 37899999999


Q ss_pred             CCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEe-
Q 021156          155 ATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVH-  233 (316)
Q Consensus       155 ad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvt-  233 (316)
                      ||.|+++++...+    |+.++++.+.+....+.+..|+.                    ..+.++++.+.|++.+.++ 
T Consensus       102 ad~V~l~~~~~~~----p~~l~~~i~~~~~~g~~v~~~v~--------------------t~eea~~a~~~Gad~Ig~~~  157 (232)
T 3igs_A          102 AAIIAVDGTARQR----PVAVEALLARIHHHHLLTMADCS--------------------SVDDGLACQRLGADIIGTTM  157 (232)
T ss_dssp             CSEEEEECCSSCC----SSCHHHHHHHHHHTTCEEEEECC--------------------SHHHHHHHHHTTCSEEECTT
T ss_pred             CCEEEECccccCC----HHHHHHHHHHHHHCCCEEEEeCC--------------------CHHHHHHHHhCCCCEEEEcC
Confidence            9999999988766    55566666665433345555553                    2477889999999988643 


Q ss_pred             -ecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhcc
Q 021156          234 -GVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFG  295 (316)
Q Consensus       234 -di~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~  295 (316)
                       +.+..++..++|+++++++++. ++|||++|||++.+|+.+++++|  +++|+||+++  +.
T Consensus       158 ~g~t~~~~~~~~~~~~i~~l~~~-~ipvIA~GGI~t~~d~~~~~~~G--adgV~VGsal--~~  215 (232)
T 3igs_A          158 SGYTTPDTPEEPDLPLVKALHDA-GCRVIAEGRYNSPALAAEAIRYG--AWAVTVGSAI--TR  215 (232)
T ss_dssp             TTSSSSSCCSSCCHHHHHHHHHT-TCCEEEESCCCSHHHHHHHHHTT--CSEEEECHHH--HC
T ss_pred             ccCCCCCCCCCCCHHHHHHHHhc-CCcEEEECCCCCHHHHHHHHHcC--CCEEEEehHh--cC
Confidence             3333334467899999999887 99999999999999999999998  9999999999  63

>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4

Probab=99.69  E-value=6.5e-16  Score=141.34  Aligned_cols=177  Identities=14%  Similarity=0.023  Sum_probs=135.1

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCCcc-cHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCC
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGADPL-SKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQM  170 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~~~-~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~  170 (316)
                      .||.++|+.|.+.|+..+|+++++.... ....+..+.+.+++|++.+++|+ ..++..++.+|||.|.+++..+.+   
T Consensus        65 ~~p~~~A~~~~~~GA~~isvlt~~~~f~G~~~~l~~i~~~v~lPvl~kdfI~d~~qi~~a~~~GAD~VlL~~~~l~~---  141 (254)
T 1vc4_A           65 VDPVEAALAYARGGARAVSVLTEPHRFGGSLLDLKRVREAVDLPLLRKDFVVDPFMLEEARAFGASAALLIVALLGE---  141 (254)
T ss_dssp             CCHHHHHHHHHHTTCSEEEEECCCSSSCCCHHHHHHHHHHCCSCEEEESCCCSHHHHHHHHHTTCSEEEEEHHHHGG---
T ss_pred             CCHHHHHHHHHHcCCCEEEEecchhhhccCHHHHHHHHHhcCCCEEECCcCCCHHHHHHHHHcCCCEEEECccchHH---
Confidence            4899999999999999999999887643 33444444457899999999998 478999999999999999987651   


Q ss_pred             CHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHH
Q 021156          171 DLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVA  250 (316)
Q Consensus       171 ~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~  250 (316)
                      ..+.+-+..+.+|       +|+       .|.+++|.         .+..+.+.|++.+-++.++..  ..++|++.++
T Consensus       142 ~l~~l~~~a~~lG-------l~~-------lvev~~~~---------E~~~a~~~gad~IGvn~~~l~--~~~~dl~~~~  196 (254)
T 1vc4_A          142 LTGAYLEEARRLG-------LEA-------LVEVHTER---------ELEIALEAGAEVLGINNRDLA--TLHINLETAP  196 (254)
T ss_dssp             GHHHHHHHHHHHT-------CEE-------EEEECSHH---------HHHHHHHHTCSEEEEESBCTT--TCCBCTTHHH
T ss_pred             HHHHHHHHHHHCC-------CeE-------EEEECCHH---------HHHHHHHcCCCEEEEccccCc--CCCCCHHHHH
Confidence            1333333334676       443       24445554         234677889998878887643  3477888888


Q ss_pred             HHhhcC-----CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHH
Q 021156          251 LLGKYS-----PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKD  302 (316)
Q Consensus       251 ~l~~~~-----~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~  302 (316)
                      ++.+.+     ++|++++|||+|.+|+.++.+ |  +++|+||+|+  |.+.-+-+.
T Consensus       197 ~L~~~i~~~~~~~~vIAegGI~s~~dv~~l~~-G--a~gvlVGsAl--~~~~d~~~~  248 (254)
T 1vc4_A          197 RLGRLARKRGFGGVLVAESGYSRKEELKALEG-L--FDAVLIGTSL--MRAPDLEAA  248 (254)
T ss_dssp             HHHHHHHHTTCCSEEEEESCCCSHHHHHTTTT-T--CSEEEECHHH--HTSSCHHHH
T ss_pred             HHHHhCccccCCCeEEEEcCCCCHHHHHHHHc-C--CCEEEEeHHH--cCCCCHHHH
Confidence            887655     789999999999999999999 9  9999999999  977643333

>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*

Probab=99.67  E-value=2.6e-15  Score=138.58  Aligned_cols=181  Identities=16%  Similarity=0.085  Sum_probs=136.2

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHH-HhCCCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeeecCCCC
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEAL-HAYPGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFNNGQM  170 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v-~~~~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~~~~~~  170 (316)
                      -+|.++|+.|.+.|+..+++.+.+.........++.+ +.+++|++..+.|.. .+++.+..+|||.|.++...+.    
T Consensus        72 ~~p~~~A~~y~~~GA~~isvltd~~~f~Gs~~~l~~ir~~v~lPvl~kdfiid~~qv~~A~~~GAD~VlLi~a~l~----  147 (272)
T 3qja_A           72 ADPAKLAQAYQDGGARIVSVVTEQRRFQGSLDDLDAVRASVSIPVLRKDFVVQPYQIHEARAHGADMLLLIVAALE----  147 (272)
T ss_dssp             -CHHHHHHHHHHTTCSEEEEECCGGGHHHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEEEGGGSC----
T ss_pred             CCHHHHHHHHHHcCCCEEEEecChhhcCCCHHHHHHHHHhCCCCEEECccccCHHHHHHHHHcCCCEEEEecccCC----
Confidence            4899999999999999999999887643333444444 468999999998875 6799999999999999887766    


Q ss_pred             CHHHHHHHH---HHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHH
Q 021156          171 DLERLKDLV---RVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDE  247 (316)
Q Consensus       171 ~~eli~ei~---~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~e  247 (316)
                       ++.++++.   +.+|-+   +-+++.                   +. +.+..+.+.|++.+.+|.++  .+..++|++
T Consensus       148 -~~~l~~l~~~a~~lGl~---~lvev~-------------------t~-ee~~~A~~~Gad~IGv~~r~--l~~~~~dl~  201 (272)
T 3qja_A          148 -QSVLVSMLDRTESLGMT---ALVEVH-------------------TE-QEADRALKAGAKVIGVNARD--LMTLDVDRD  201 (272)
T ss_dssp             -HHHHHHHHHHHHHTTCE---EEEEES-------------------SH-HHHHHHHHHTCSEEEEESBC--TTTCCBCTT
T ss_pred             -HHHHHHHHHHHHHCCCc---EEEEcC-------------------CH-HHHHHHHHCCCCEEEECCCc--ccccccCHH
Confidence             34444444   345421   112221                   12 34556667899999888644  444567889


Q ss_pred             HHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHH
Q 021156          248 LVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHA  308 (316)
Q Consensus       248 li~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~  308 (316)
                      .++++.+.+  ++|+++.|||++.+|+.++.+.|  ++||+||+|+  +... ++.+..+.+.
T Consensus       202 ~~~~l~~~v~~~~pvVaegGI~t~edv~~l~~~G--adgvlVGsal--~~a~-dp~~~~~~l~  259 (272)
T 3qja_A          202 CFARIAPGLPSSVIRIAESGVRGTADLLAYAGAG--ADAVLVGEGL--VTSG-DPRAAVADLV  259 (272)
T ss_dssp             HHHHHGGGSCTTSEEEEESCCCSHHHHHHHHHTT--CSEEEECHHH--HTCS-CHHHHHHHHH
T ss_pred             HHHHHHHhCcccCEEEEECCCCCHHHHHHHHHcC--CCEEEEcHHH--hCCC-CHHHHHHHHH
Confidence            999998776  79999999999999999999998  9999999999  8665 5666555443

>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}

Probab=99.66  E-value=5.3e-16  Score=139.87  Aligned_cols=171  Identities=14%  Similarity=0.050  Sum_probs=126.9

Q ss_pred             eecCCccCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHhCCCcEE-----EecC--C--C--HHHHHHHHHcCC
Q 021156           87 TNFESDKSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAYPGGLQ-----VGGG--I--N--SDNSLSYIEEGA  155 (316)
Q Consensus        87 ~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~~~pl~-----vGGG--I--r--~e~~~~~l~~Ga  155 (316)
                      +++.+..+|.++|+.|.+.|+.++.+       .+...+.++.+.+++|+.     .++|  +  .  .++++.+.++||
T Consensus        30 ~pl~~~~~~~~~A~a~~~~Ga~~i~~-------~~~~~i~~ir~~v~~Pvig~~k~~~~~~~~~I~~~~~~i~~~~~aGa  102 (229)
T 3q58_A           30 SPMDKPEIVAAMAQAAASAGAVAVRI-------EGIENLRTVRPHLSVPIIGIIKRDLTGSPVRITPYLQDVDALAQAGA  102 (229)
T ss_dssp             STTCSHHHHHHHHHHHHHTTCSEEEE-------ESHHHHHHHGGGCCSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHTC
T ss_pred             CCCCCcchHHHHHHHHHHCCCcEEEE-------CCHHHHHHHHHhcCCCEEEEEeecCCCCceEeCccHHHHHHHHHcCC
Confidence            34444457889999999999988765       133334343346889974     2344  3  2  378999999999


Q ss_pred             CEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEe--
Q 021156          156 THVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVH--  233 (316)
Q Consensus       156 d~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvt--  233 (316)
                      |.|+++++...+    |+.+.++.+.+.+..+.+..|+.                    ..+.++.+.+.|++.+.++  
T Consensus       103 d~I~l~~~~~~~----p~~l~~~i~~~~~~g~~v~~~v~--------------------t~eea~~a~~~Gad~Ig~~~~  158 (229)
T 3q58_A          103 DIIAFDASFRSR----PVDIDSLLTRIRLHGLLAMADCS--------------------TVNEGISCHQKGIEFIGTTLS  158 (229)
T ss_dssp             SEEEEECCSSCC----SSCHHHHHHHHHHTTCEEEEECS--------------------SHHHHHHHHHTTCSEEECTTT
T ss_pred             CEEEECccccCC----hHHHHHHHHHHHHCCCEEEEecC--------------------CHHHHHHHHhCCCCEEEecCc
Confidence            999999987765    55555665555322344445542                    2478889999999988643  


Q ss_pred             ecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          234 GVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       234 di~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      +.+..++..++|+++++++++. ++|||++|||++.+|+.+++++|  +++|+||+++
T Consensus       159 g~t~~~~~~~~~~~li~~l~~~-~ipvIA~GGI~t~~d~~~~~~~G--adgV~VGsai  213 (229)
T 3q58_A          159 GYTGPITPVEPDLAMVTQLSHA-GCRVIAEGRYNTPALAANAIEHG--AWAVTVGSAI  213 (229)
T ss_dssp             TSSSSCCCSSCCHHHHHHHHTT-TCCEEEESSCCSHHHHHHHHHTT--CSEEEECHHH
T ss_pred             cCCCCCcCCCCCHHHHHHHHHc-CCCEEEECCCCCHHHHHHHHHcC--CCEEEEchHh
Confidence            3333334467899999999887 99999999999999999999998  9999999999

>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0

Probab=99.65  E-value=5.2e-15  Score=136.38  Aligned_cols=183  Identities=13%  Similarity=0.066  Sum_probs=139.4

Q ss_pred             ccCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHH-HhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCC
Q 021156           92 DKSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEAL-HAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQ  169 (316)
Q Consensus        92 ~~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v-~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~  169 (316)
                      +-||.++|+.|.+.|+..+|+++.+.....+...++.+ +.+++|+....+|+ ..++..+..+|||.|.++++.+.   
T Consensus        78 ~~dp~~~A~~y~~~GA~~IsVltd~~~f~Gs~~~L~~ir~~v~lPVl~Kdfi~d~~qi~ea~~~GAD~VlLi~a~L~---  154 (272)
T 3tsm_A           78 DFDPPALAKAYEEGGAACLSVLTDTPSFQGAPEFLTAARQACSLPALRKDFLFDPYQVYEARSWGADCILIIMASVD---  154 (272)
T ss_dssp             SCCHHHHHHHHHHTTCSEEEEECCSTTTCCCHHHHHHHHHTSSSCEEEESCCCSTHHHHHHHHTTCSEEEEETTTSC---
T ss_pred             CCCHHHHHHHHHHCCCCEEEEeccccccCCCHHHHHHHHHhcCCCEEECCccCCHHHHHHHHHcCCCEEEEcccccC---
Confidence            35899999999999999999999876543333344444 46899999999998 48999999999999999998876   


Q ss_pred             CCHHHHHHHH---HHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCH
Q 021156          170 MDLERLKDLV---RVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDD  246 (316)
Q Consensus       170 ~~~eli~ei~---~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~  246 (316)
                        ++.++++.   +.+|   +-+-+++.                   + .+.++++.+.|++.|-++.++.  +..++|+
T Consensus       155 --~~~l~~l~~~a~~lG---l~~lvevh-------------------~-~eEl~~A~~~ga~iIGinnr~l--~t~~~dl  207 (272)
T 3tsm_A          155 --DDLAKELEDTAFALG---MDALIEVH-------------------D-EAEMERALKLSSRLLGVNNRNL--RSFEVNL  207 (272)
T ss_dssp             --HHHHHHHHHHHHHTT---CEEEEEEC-------------------S-HHHHHHHTTSCCSEEEEECBCT--TTCCBCT
T ss_pred             --HHHHHHHHHHHHHcC---CeEEEEeC-------------------C-HHHHHHHHhcCCCEEEECCCCC--ccCCCCh
Confidence              44455553   4455   12223331                   1 2456777899999887887654  3346799


Q ss_pred             HHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHH
Q 021156          247 ELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHA  308 (316)
Q Consensus       247 eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~  308 (316)
                      +...++.+..  ++|+++.|||++++|+.++.+.|  +++|+||+|+  +..+-+-+.+.++..
T Consensus       208 ~~~~~L~~~ip~~~~vIaesGI~t~edv~~l~~~G--a~gvLVG~al--mr~~d~~~~~~~l~~  267 (272)
T 3tsm_A          208 AVSERLAKMAPSDRLLVGESGIFTHEDCLRLEKSG--IGTFLIGESL--MRQHDVAAATRALLT  267 (272)
T ss_dssp             HHHHHHHHHSCTTSEEEEESSCCSHHHHHHHHTTT--CCEEEECHHH--HTSSCHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCcEEEECCCCCHHHHHHHHHcC--CCEEEEcHHH--cCCcCHHHHHHHHHh
Confidence            9888888765  68999999999999999999998  9999999999  876655444544544

>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5

Probab=99.59  E-value=3.6e-14  Score=126.19  Aligned_cols=170  Identities=12%  Similarity=-0.046  Sum_probs=125.8

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHhCCCcEEE-------ecCC---C-HHHHHHHHHcCCCEEEeC
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAYPGGLQV-------GGGI---N-SDNSLSYIEEGATHVIVT  161 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~~~pl~v-------GGGI---r-~e~~~~~l~~Gad~VVig  161 (316)
                      .++.++|+.+.+.|++++|+-       +...+.++.+.++.|++.       |+++   + .++++.++++||+.|.++
T Consensus        23 ~~~~~~a~~~~~~Ga~~i~~~-------~~~~i~~i~~~~~~pv~~~~~~~~~~~~~~i~~~~~~i~~~~~~Gad~v~l~   95 (223)
T 1y0e_A           23 FIMSKMALAAYEGGAVGIRAN-------TKEDILAIKETVDLPVIGIVKRDYDHSDVFITATSKEVDELIESQCEVIALD   95 (223)
T ss_dssp             HHHHHHHHHHHHHTCSEEEEE-------SHHHHHHHHHHCCSCEEEECBCCCTTCCCCBSCSHHHHHHHHHHTCSEEEEE
T ss_pred             ccHHHHHHHHHHCCCeeeccC-------CHHHHHHHHHhcCCCEEeeeccCCCccccccCCcHHHHHHHHhCCCCEEEEe
Confidence            457789999999999998862       233344444467899852       6676   4 378999999999999999


Q ss_pred             CeeecCC-CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeec-----
Q 021156          162 SYVFNNG-QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGV-----  235 (316)
Q Consensus       162 t~~~~~~-~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi-----  235 (316)
                      +....++ +...++++++.+.|+ ..+ +.+++.                   ++ +.+.++.+.|++.+.+...     
T Consensus        96 ~~~~~~p~~~~~~~i~~~~~~~~-~~~-v~~~~~-------------------t~-~e~~~~~~~G~d~i~~~~~g~t~~  153 (223)
T 1y0e_A           96 ATLQQRPKETLDELVSYIRTHAP-NVE-IMADIA-------------------TV-EEAKNAARLGFDYIGTTLHGYTSY  153 (223)
T ss_dssp             CSCSCCSSSCHHHHHHHHHHHCT-TSE-EEEECS-------------------SH-HHHHHHHHTTCSEEECTTTTSSTT
T ss_pred             eecccCcccCHHHHHHHHHHhCC-Cce-EEecCC-------------------CH-HHHHHHHHcCCCEEEeCCCcCcCC
Confidence            9886652 112478888888773 333 234442                   12 4477789999998754322     


Q ss_pred             CCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhcc
Q 021156          236 DVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFG  295 (316)
Q Consensus       236 ~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~  295 (316)
                      .++++..+++++.++++++.+++||++.|||++.+|+.++++.|  +++|++|+++  |.
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~ipvia~GGI~~~~~~~~~~~~G--ad~v~vG~al--~~  209 (223)
T 1y0e_A          154 TQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVITPDMYKRVMDLG--VHCSVVGGAI--TR  209 (223)
T ss_dssp             STTCCTTHHHHHHHHHHHHHCCSEEEEESSCCSHHHHHHHHHTT--CSEEEECHHH--HC
T ss_pred             CCCCCCCcccHHHHHHHHhhCCCCEEEecCCCCHHHHHHHHHcC--CCEEEEChHH--cC
Confidence            12222245688999999988899999999999999999999998  9999999999  76

>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A

Probab=99.57  E-value=1.6e-14  Score=130.71  Aligned_cols=171  Identities=16%  Similarity=0.097  Sum_probs=126.6

Q ss_pred             CHHHHHHHHHHcCCCcceEE------EecCCc-c-----------cH---HHHHHHHH-hCCCcEEEecCCCH-------
Q 021156           94 SAAEFANLYKEDGLTGGHAI------MLGADP-L-----------SK---AAAIEALH-AYPGGLQVGGGINS-------  144 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lv------DLda~~-~-----------~~---~~i~~~v~-~~~~pl~vGGGIr~-------  144 (316)
                      +-.+.++.+.+. ++++|+.      ++|+.. .           +.   ..+++.++ .+++|+.++++++.       
T Consensus        20 ~~~~~a~~~~~~-ad~iel~~p~sdp~~DG~~~~~~~~~al~~g~~~~~~~~~i~~i~~~~~~pv~~~~~~~~~~~~~~~   98 (248)
T 1geq_A           20 STLNFLLALDEY-AGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVR   98 (248)
T ss_dssp             HHHHHHHHHGGG-BSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCCCCEEEEECHHHHHHHCHH
T ss_pred             HHHHHHHHHHHc-CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCCCEEEEeccchhhhcCHH
Confidence            345788889888 9999999      788642 1           21   33444454 46789999998774       


Q ss_pred             HHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHH
Q 021156          145 DNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLA  224 (316)
Q Consensus       145 e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~  224 (316)
                      +.++.++++||+.|++++...++    ++.+.+..+++| .++++.++..                   ++.+.++.+.+
T Consensus        99 ~~~~~~~~~Gad~v~~~~~~~~~----~~~~~~~~~~~g-~~~~~~i~~~-------------------t~~e~~~~~~~  154 (248)
T 1geq_A           99 NFLAEAKASGVDGILVVDLPVFH----AKEFTEIAREEG-IKTVFLAAPN-------------------TPDERLKVIDD  154 (248)
T ss_dssp             HHHHHHHHHTCCEEEETTCCGGG----HHHHHHHHHHHT-CEEEEEECTT-------------------CCHHHHHHHHH
T ss_pred             HHHHHHHHCCCCEEEECCCChhh----HHHHHHHHHHhC-CCeEEEECCC-------------------CHHHHHHHHHh
Confidence            56999999999999999988876    888888888897 4556666532                   23455555555


Q ss_pred             cCCCEEEEeecCCccccC---CC---CHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhcc
Q 021156          225 SYADEFLVHGVDVEGKKL---GI---DDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFG  295 (316)
Q Consensus       225 ~Ga~~ilvtdi~~dG~~~---G~---d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~  295 (316)
                      . ++.++++ ++.+|+..   +.   +++.++++++.+++|++++|||++.+++.++++.|  +++|++|+++  |.
T Consensus       155 ~-~d~~i~~-~~~~G~~g~~~~~~~~~~~~i~~l~~~~~~pi~~~GGI~~~e~i~~~~~~G--ad~vivGsai--~~  225 (248)
T 1geq_A          155 M-TTGFVYL-VSLYGTTGAREEIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEG--ANGVVVGSAL--VK  225 (248)
T ss_dssp             H-CSSEEEE-ECCC-------CCCHHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTT--CSEEEECHHH--HH
T ss_pred             c-CCCeEEE-EECCccCCCCCCCChhHHHHHHHHHhhcCCCEEEEeecCCHHHHHHHHHcC--CCEEEEcHHH--Hh
Confidence            4 5545544 44455432   22   36789999888899999999999999999999998  9999999999  75

>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}

Probab=99.54  E-value=4.1e-14  Score=129.10  Aligned_cols=121  Identities=21%  Similarity=0.406  Sum_probs=101.5

Q ss_pred             ceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEe
Q 021156          185 QRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAG  264 (316)
Q Consensus       185 ~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasG  264 (316)
                      |+|+++||++.++|++.|++.+|...++.++.++++.+.+.|++.+.+++.+++|+..|++++.++++++.+++|++++|
T Consensus         2 q~ii~~iD~~~~~g~~~v~~~~g~~~~~~~~~~~a~~~~~~Ga~~i~v~d~~~~~~~~g~~~~~i~~i~~~~~iPvi~~g   81 (266)
T 2w6r_A            2 QRVVVAIDAKRVDGEFMVFTHSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASG   81 (266)
T ss_dssp             CEEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHHTCSEEEEEETTTSSCSSCCCHHHHHHHGGGCCSCEEEES
T ss_pred             CeEEEEEEEEcCCCCEEEEEcCCeeccCCCHHHHHHHHHHCCCCEEEEEecCcccCCCcccHHHHHHHHHhcCCCEEEEC
Confidence            67999999983235469999999887777899999999999999999999999999999999999999998999999999


Q ss_pred             CCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHHh
Q 021156          265 GVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       265 GI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~~  309 (316)
                      |+++++++.++++.|  +++|++|+++  +++.++++.+.++++.
T Consensus        82 gi~~~~~i~~~~~~G--ad~v~lg~~~--~~~~~~~~~~~~~~~~  122 (266)
T 2w6r_A           82 GAGKMEHFLEAFLAG--ADKALAASVF--HFREIDMRELKEYLKK  122 (266)
T ss_dssp             CCCSTHHHHHHHHHT--CSEEECCCCC--------CHHHHHHCC-
T ss_pred             CCCCHHHHHHHHHcC--CcHhhhhHHH--HhCCCCHHHHHHHHHH
Confidence            999999999999998  9999999999  8654445555555433

>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A

Probab=99.51  E-value=9e-14  Score=129.62  Aligned_cols=172  Identities=22%  Similarity=0.187  Sum_probs=122.2

Q ss_pred             CHHHHHHHHHHcCCCcceEE-----EecCCcc----cHHHHHHHHH-hCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCC
Q 021156           94 SAAEFANLYKEDGLTGGHAI-----MLGADPL----SKAAAIEALH-AYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTS  162 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lv-----DLda~~~----~~~~i~~~v~-~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt  162 (316)
                      +|.++|+.|+++|++.+-+.     |..+...    .....++.++ .+++|+.+++++. .++++.+.++|||.|  ++
T Consensus        29 ~~~e~A~~ye~~GA~~lsvLe~~~~Di~~~~g~~R~~~~~~i~~i~~~v~iPvl~k~~i~~ide~qil~aaGAD~I--d~  106 (297)
T 4adt_A           29 KNVEQAKIAEKAGAIGVMILENIPSELRNTDGVARSVDPLKIEEIRKCISINVLAKVRIGHFVEAQILEELKVDML--DE  106 (297)
T ss_dssp             SSHHHHHHHHHHTCSEEEECCCCC-----CCCCCCCCCHHHHHHHHTTCCSEEEEEEETTCHHHHHHHHHTTCSEE--EE
T ss_pred             CcHHHHHHHHHcCCCEEEEecCCCCcchhcCCcccCCCHHHHHHHHHhcCCCEEEeccCCcHHHHHHHHHcCCCEE--Ec
Confidence            45589999999999998887     6664332    3444445554 6899999999998 688999999999998  33


Q ss_pred             eeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeec-------
Q 021156          163 YVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGV-------  235 (316)
Q Consensus       163 ~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi-------  235 (316)
                      .....   .++++..+.+.+....+++  |++                   +. +.+.+..+.|++.|.++..       
T Consensus       107 s~~~~---~~~li~~i~~~~~g~~vvv--~v~-------------------~~-~Ea~~a~~~Gad~I~v~g~~gTG~~~  161 (297)
T 4adt_A          107 SEVLT---MADEYNHINKHKFKTPFVC--GCT-------------------NL-GEALRRISEGASMIRTKGEAGTGNII  161 (297)
T ss_dssp             ETTSC---CSCSSCCCCGGGCSSCEEE--EES-------------------SH-HHHHHHHHHTCSEEEECCCTTSCCCH
T ss_pred             CCCCC---HHHHHHHHHhcCCCCeEEE--EeC-------------------CH-HHHHHHHhCCCCEEEECCCcCCCchH
Confidence            22211   2566666666543355544  443                   12 3455666777877766643       


Q ss_pred             -------------------CCcc-----ccCCCCHHHHHHHhhcCCCcEE--EEeCCCCHHHHHHHHHhCCCcCEEEEcc
Q 021156          236 -------------------DVEG-----KKLGIDDELVALLGKYSPIPVT--YAGGVTTMADLEKIKVAGIGRVDVTVGS  289 (316)
Q Consensus       236 -------------------~~dG-----~~~G~d~eli~~l~~~~~iPVI--asGGI~s~eDi~~l~~~G~g~~gVivG~  289 (316)
                                         +.++     +..++++++++++.+.+++|++  +.|||++++|+.++++.|  +++|+||+
T Consensus       162 ~~v~h~~~~~~eir~l~~~~~d~L~t~~~~~~~~~~ll~~i~~~~~iPVivvA~GGI~t~~dv~~~~~~G--AdgVlVGs  239 (297)
T 4adt_A          162 EAIKHIRTVNNEIKYLCSLDESEVYNFAKKLRAPIDLILLTRKLKRLPVVNFAAGGIATPADAAMCMQLG--MDGVFVGS  239 (297)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTTHHHHHHHHTCCHHHHHHHHHHTSCSSEEEEESCCCSHHHHHHHHHTT--CSCEEESH
T ss_pred             HHHHHHHHhhhhhhhhccccccccccccccCCCCHHHHHHHHHhcCCCeEEEecCCCCCHHHHHHHHHcC--CCEEEEhH
Confidence                               2222     2237899999999988888987  999999999999999998  99999999


Q ss_pred             chhhccC
Q 021156          290 ALDIFGG  296 (316)
Q Consensus       290 Al~~~~g  296 (316)
                      ++  +..
T Consensus       240 ai--~~a  244 (297)
T 4adt_A          240 GI--FES  244 (297)
T ss_dssp             HH--HTS
T ss_pred             HH--HcC
Confidence            99  653

>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5

Probab=99.50  E-value=1.1e-12  Score=117.66  Aligned_cols=166  Identities=15%  Similarity=0.043  Sum_probs=124.8

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHH-hCCCcEEE-------ecCC---C-HHHHHHHHHcCCCEEEeC
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALH-AYPGGLQV-------GGGI---N-SDNSLSYIEEGATHVIVT  161 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~-~~~~pl~v-------GGGI---r-~e~~~~~l~~Gad~VVig  161 (316)
                      ++.++|+.+.+.|++++|+ +      ... .++.++ .+++|++.       ++++   + .++++.++++||+.|.++
T Consensus        37 ~~~~~a~~~~~~G~~~i~~-~------~~~-~i~~i~~~~~~p~i~~~~~~~~~~~~~i~~~~~~i~~~~~~Gad~V~l~  108 (234)
T 1yxy_A           37 IMPLMAKAAQEAGAVGIRA-N------SVR-DIKEIQAITDLPIIGIIKKDYPPQEPFITATMTEVDQLAALNIAVIAMD  108 (234)
T ss_dssp             SHHHHHHHHHHHTCSEEEE-E------SHH-HHHHHHTTCCSCEEEECBCCCTTSCCCBSCSHHHHHHHHTTTCSEEEEE
T ss_pred             hHHHHHHHHHHCCCcEeec-C------CHH-HHHHHHHhCCCCEEeeEcCCCCccccccCChHHHHHHHHHcCCCEEEEc
Confidence            7889999999999999886 2      223 344444 57889842       3344   2 378999999999999999


Q ss_pred             CeeecCC--CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEE--EEeecCC
Q 021156          162 SYVFNNG--QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEF--LVHGVDV  237 (316)
Q Consensus       162 t~~~~~~--~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~i--lvtdi~~  237 (316)
                      .+...++  ....+.++++.+.++ +. .+.+++.                   + .+.++.+.+.|++.+  .++.+..
T Consensus       109 ~~~~~~~~~~~~~~~i~~i~~~~~-~~-~v~~~~~-------------------t-~~ea~~a~~~Gad~i~~~v~g~~~  166 (234)
T 1yxy_A          109 CTKRDRHDGLDIASFIRQVKEKYP-NQ-LLMADIS-------------------T-FDEGLVAHQAGIDFVGTTLSGYTP  166 (234)
T ss_dssp             CCSSCCTTCCCHHHHHHHHHHHCT-TC-EEEEECS-------------------S-HHHHHHHHHTTCSEEECTTTTSST
T ss_pred             ccccCCCCCccHHHHHHHHHHhCC-CC-eEEEeCC-------------------C-HHHHHHHHHcCCCEEeeeccccCC
Confidence            8876542  122578888887773 32 2334442                   1 245788899999988  5565543


Q ss_pred             ccc--cCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhcc
Q 021156          238 EGK--KLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFG  295 (316)
Q Consensus       238 dG~--~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~  295 (316)
                       ++  ..++++++++++++. ++||+++|||+|.+|+.++++.|  +++|++|+++  |.
T Consensus       167 -~~~~~~~~~~~~i~~~~~~-~ipvia~GGI~s~~~~~~~~~~G--ad~v~vGsal--~~  220 (234)
T 1yxy_A          167 -YSRQEAGPDVALIEALCKA-GIAVIAEGKIHSPEEAKKINDLG--VAGIVVGGAI--TR  220 (234)
T ss_dssp             -TSCCSSSCCHHHHHHHHHT-TCCEEEESCCCSHHHHHHHHTTC--CSEEEECHHH--HC
T ss_pred             -CCcCCCCCCHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHCC--CCEEEEchHH--hC
Confidence             33  467899999999887 89999999999999999999998  9999999999  86

>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A

Probab=99.48  E-value=1.8e-14  Score=129.30  Aligned_cols=133  Identities=15%  Similarity=0.145  Sum_probs=97.0

Q ss_pred             CceeeecCCCCCCccccccccccCccccccccc-----EEEEE--EEeeCCe-EEEEEcccccCCCCCCCceeeecCCcc
Q 021156           22 SDLFWLHKNNNSSFYAPSSSLSRPSRLSVRCAV-----RFRPC--IDIHKGK-VKQIVGSTLQDSKDDGTKLVTNFESDK   93 (316)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~iIP~--IDi~~G~-vvr~~~g~~~~~~y~~~~~~~~~~~~~   93 (316)
                      .-+||+++|||+|++|+|+. +     +++...     ++||.  |-+..+. +-++.+.     +       +.    -
T Consensus        80 l~pslln~~~~~~i~g~~~~-a-----~~~~g~~~~~~e~i~~gYivv~p~s~~~~~~~a-----~-------~~----~  137 (228)
T 3vzx_A           80 FIPSVLNSKNADWIVGMHQK-A-----MKEYGELMSMEEIVAEGYCIANPDCKAAALTEA-----D-------AD----L  137 (228)
T ss_dssp             EEEEETTBSSGGGTTHHHHH-H-----HHHHHHHHHHSCEEEEEEEECCSSSHHHHHTTB-----C-------CC----C
T ss_pred             EEeeecCCCCcchhhhHHHH-H-----HHHcCCCCcccceeeeEEEEECCCCcceeeecc-----c-------CC----C
Confidence            35789999999999999999 4     255665     99997  4444433 2221110     0       11    1


Q ss_pred             CHHHHHHHHHHcC-CCcceEEEecCCc-ccHHHHHHHHH-hC-CCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCC
Q 021156           94 SAAEFANLYKEDG-LTGGHAIMLGADP-LSKAAAIEALH-AY-PGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNG  168 (316)
Q Consensus        94 ~p~e~a~~~~~~G-~~~l~lvDLda~~-~~~~~i~~~v~-~~-~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~  168 (316)
                      +|.+ +..|+.++ +.++|++||++.. ..+..+++.++ .+ ++|+++||||| .|++++++ .|||.||+||++.++ 
T Consensus       138 ~~e~-~~~~a~~a~~~g~~~VYld~sG~~~~~~~i~~i~~~~~~~Pv~vGGGI~t~e~a~~~~-~gAD~VVVGSa~v~~-  214 (228)
T 3vzx_A          138 NMDD-IVAYARVSELLQLPIFYLEYSGVLGDIEAVKKTKAVLETSTLFYGGGIKDAETAKQYA-EHADVIVVGNAVYED-  214 (228)
T ss_dssp             CHHH-HHHHHHHHHHTTCSEEEEECTTSCCCHHHHHHHHHHCSSSEEEEESSCCSHHHHHHHH-TTCSEEEECTHHHHC-
T ss_pred             CHHH-HHHHHHHHHHcCCCEEEecCCCCcCCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHH-hCCCEEEEChHHhcC-
Confidence            4654 45566544 8899999999742 22445555554 57 79999999999 59999998 799999999999997 


Q ss_pred             CCCHHHHHHHHHHh
Q 021156          169 QMDLERLKDLVRVV  182 (316)
Q Consensus       169 ~~~~eli~ei~~~~  182 (316)
                         |++++++++.+
T Consensus       215 ---p~~~~~~v~a~  225 (228)
T 3vzx_A          215 ---FDRALKTVAAV  225 (228)
T ss_dssp             ---HHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHH
Confidence               99999999876

>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2

Probab=99.43  E-value=2.6e-12  Score=113.83  Aligned_cols=184  Identities=14%  Similarity=0.110  Sum_probs=125.8

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCC-ccc---HHHHHHHHH-hCCCcEEEecCCC-H-HHHHHHHHcCCCEEEeCCeeec
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGAD-PLS---KAAAIEALH-AYPGGLQVGGGIN-S-DNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~-~~~---~~~i~~~v~-~~~~pl~vGGGIr-~-e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      +..+.++.+.+.|++.+|+.++|+. ..+   ...+.+.++ .++.|+.+++.++ . +.++.+.++|+|.|.+.....+
T Consensus        17 ~~~~~~~~~~~~G~~~i~~~~~dg~~~~~~~~g~~~i~~i~~~~~~~~~v~l~v~d~~~~i~~~~~~gad~v~vh~~~~~   96 (220)
T 2fli_A           17 NFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMTIHTESTR   96 (220)
T ss_dssp             GHHHHHHHHHHTTCCEEEEEEEBSSSSSCBCBCHHHHHHHHTTCCSEEEEEEESSSGGGGHHHHHHHTCSEEEEEGGGCS
T ss_pred             HHHHHHHHHHHcCCCEEEEEeecCCCCCccccCHHHHHHHHHhCCCCEEEEEeecCHHHHHHHHHHcCCCEEEEccCccc
Confidence            4567888888999999999999976 332   144555555 4578999999998 4 4699999999999999776555


Q ss_pred             CCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecC--CccccCCC
Q 021156          167 NGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVD--VEGKKLGI  244 (316)
Q Consensus       167 ~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~--~dG~~~G~  244 (316)
                      .    +..+.+..+.+| -++.++++..                +   ..+.++.+ ..+++.+++....  .+|...++
T Consensus        97 ~----~~~~~~~~~~~g-~~i~~~~~~~----------------t---~~e~~~~~-~~~~d~vl~~~~~~g~~g~~~~~  151 (220)
T 2fli_A           97 H----IHGALQKIKAAG-MKAGVVINPG----------------T---PATALEPL-LDLVDQVLIMTVNPGFGGQAFIP  151 (220)
T ss_dssp             C----HHHHHHHHHHTT-SEEEEEECTT----------------S---CGGGGGGG-TTTCSEEEEESSCTTCSSCCCCG
T ss_pred             c----HHHHHHHHHHcC-CcEEEEEcCC----------------C---CHHHHHHH-HhhCCEEEEEEECCCCcccccCH
Confidence            4    655555556665 4577776432                0   11222222 2458877764433  34433333


Q ss_pred             C-HHHHHHHhhcC-----CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHH
Q 021156          245 D-DELVALLGKYS-----PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHA  308 (316)
Q Consensus       245 d-~eli~~l~~~~-----~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~  308 (316)
                      + ++.++++++.+     ++|+++.|||+ ++++.++.+.|  ++++++||++  |.. -++++..+.++
T Consensus       152 ~~~~~i~~~~~~~~~~~~~~~i~v~GGI~-~~~~~~~~~~G--ad~vvvGsai--~~~-~d~~~a~~~~~  215 (220)
T 2fli_A          152 ECLEKVATVAKWRDEKGLSFDIEVDGGVD-NKTIRACYEAG--ANVFVAGSYL--FKA-SDLVSQVQTLR  215 (220)
T ss_dssp             GGHHHHHHHHHHHHHTTCCCEEEEESSCC-TTTHHHHHHHT--CCEEEESHHH--HTS-SCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCceEEEECcCC-HHHHHHHHHcC--CCEEEEChHH--hCC-CCHHHHHHHHH
Confidence            2 24455555433     78999999999 79999999998  9999999999  866 45666655443

>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A

Probab=99.39  E-value=8.3e-13  Score=123.49  Aligned_cols=170  Identities=22%  Similarity=0.144  Sum_probs=115.7

Q ss_pred             cCHHHHHHHHHHcCCCcceEEE----ecCC-----c-ccHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeC
Q 021156           93 KSAAEFANLYKEDGLTGGHAIM----LGAD-----P-LSKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVT  161 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvD----Lda~-----~-~~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVig  161 (316)
                      .+|.++|+.+.++|++.+++++    ++..     . .+...+.++.+.+++|++++--+. .++++.++++|||.|+ +
T Consensus        28 ~~~~~~a~~~~~~Ga~~I~~l~p~~~~~~~~~G~~~~~~~~~i~~I~~~~~iPv~~k~r~g~~~~~~~~~a~GAd~V~-~  106 (305)
T 2nv1_A           28 VINAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPTIVEEVMNAVSIPVMAKARIGHIVEARVLEAMGVDYID-E  106 (305)
T ss_dssp             ESSHHHHHHHHHTTCSEEEECCC-------CCCCCCCCCHHHHHHHHHHCSSCEEEEECTTCHHHHHHHHHHTCSEEE-E
T ss_pred             CCHHHHHHHHHHcCCCEEEEcCCCcchhhhccCcccCCCHHHHHHHHHhCCCCEEecccccchHHHHHHHHCCCCEEE-E
Confidence            4789999999999999998775    2211     1 244445555556889998543332 4778899999999997 5


Q ss_pred             CeeecCCCCCHHHHHHH--HHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEE-------
Q 021156          162 SYVFNNGQMDLERLKDL--VRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLV-------  232 (316)
Q Consensus       162 t~~~~~~~~~~eli~ei--~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilv-------  232 (316)
                      +....     ++.+.++  ...||.   .+.+++.                   ++.+.. +..+.|++.+.+       
T Consensus       107 ~~~l~-----~~~~~~~i~~~~~g~---~v~~~~~-------------------~~~e~~-~a~~~Gad~V~~~G~~g~g  158 (305)
T 2nv1_A          107 SEVLT-----PADEEFHLNKNEYTV---PFVCGCR-------------------DLGEAT-RRIAEGASMLRTKGEPGTG  158 (305)
T ss_dssp             CTTSC-----CSCSSCCCCGGGCSS---CEEEEES-------------------SHHHHH-HHHHTTCSEEEECCCTTSC
T ss_pred             eccCC-----HHHHHHHHHHhccCC---cEEEEeC-------------------CHHHHH-HHHHCCCCEEEeccccCcc
Confidence            54443     2222222  234542   2223432                   122333 334667776655       


Q ss_pred             -------------------eecCCcccc-----CCCCHHHHHHHhhcCCCcEE--EEeCCCCHHHHHHHHHhCCCcCEEE
Q 021156          233 -------------------HGVDVEGKK-----LGIDDELVALLGKYSPIPVT--YAGGVTTMADLEKIKVAGIGRVDVT  286 (316)
Q Consensus       233 -------------------tdi~~dG~~-----~G~d~eli~~l~~~~~iPVI--asGGI~s~eDi~~l~~~G~g~~gVi  286 (316)
                                         ++++.++.+     .+.++++++++++.+++||+  ++|||.+.+|+.++++.|  +++|+
T Consensus       159 ~~~~~~~h~rt~~~~i~~l~gi~~~~~~~~~~~~~~~~~~i~~i~~~~~iPvi~~a~GGI~~~~d~~~~~~~G--adgV~  236 (305)
T 2nv1_A          159 NIVEAVRHMRKVNAQVRKVVAMSEDELMTEAKNLGAPYELLLQIKKDGKLPVVNFAAGGVATPADAALMMQLG--ADGVF  236 (305)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHTCCHHHHHHHHHHTSCSSCEEBCSCCCSHHHHHHHHHTT--CSCEE
T ss_pred             chHHHHhhhhhhhccchhhccccchhhhcccccccccHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHcC--CCEEE
Confidence                               345555543     56799999999988889999  999999999999999988  99999


Q ss_pred             Eccchhhcc
Q 021156          287 VGSALDIFG  295 (316)
Q Consensus       287 vG~Al~~~~  295 (316)
                      ||+++  +.
T Consensus       237 vGsai--~~  243 (305)
T 2nv1_A          237 VGSGI--FK  243 (305)
T ss_dssp             ECGGG--GG
T ss_pred             EcHHH--Hc
Confidence            99999  75

>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*

Probab=99.39  E-value=1.4e-12  Score=124.35  Aligned_cols=157  Identities=13%  Similarity=0.144  Sum_probs=115.8

Q ss_pred             CCcEEEecCC-C-H-HHHHHHHHcCCCEEEeCCe--------------eecCCCCCHHHHHHHHHHhcCceEEEeeeeee
Q 021156          133 PGGLQVGGGI-N-S-DNSLSYIEEGATHVIVTSY--------------VFNNGQMDLERLKDLVRVVGKQRLVLDLSCRK  195 (316)
Q Consensus       133 ~~pl~vGGGI-r-~-e~~~~~l~~Gad~VVigt~--------------~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~  195 (316)
                      ++-+|++|.- . . +.++.+.++|+|.|-|+..              +.+    +++++.++.+.+. +.+-+.+.+| 
T Consensus        59 p~~vQL~g~~p~~~~~aA~~a~~~G~D~IeIn~gcP~~~~~~d~~G~~l~~----~~~~~~eiv~av~-~~v~~PV~vK-  132 (350)
T 3b0p_A           59 PIALQLAGSDPKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLL----DLARVREILKAMG-EAVRVPVTVK-  132 (350)
T ss_dssp             SEEEEEECSCHHHHHHHHHHHHHTTCSEEEEEECCCSHHHHHTTCGGGGGG----CHHHHHHHHHHHH-HHCSSCEEEE-
T ss_pred             eEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCcCCCCcCcCCCcchhHHh----CHHHHHHHHHHHH-HHhCCceEEE-
Confidence            3557888765 2 3 4467777899999888642              223    4888888888773 3332334333 


Q ss_pred             cCCeeEEEeCCcceeccc-CHHHHHHHHHHcCCCEEEEeecCCccccCC--------CCHHHHHHHhhcC-CCcEEEEeC
Q 021156          196 KDGKYAIVTDRWQKFSDV-YLDERVLDFLASYADEFLVHGVDVEGKKLG--------IDDELVALLGKYS-PIPVTYAGG  265 (316)
Q Consensus       196 ~~g~~~v~~~gw~~~~~~-~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G--------~d~eli~~l~~~~-~iPVIasGG  265 (316)
                            ++ -||.+.... +..++++.+.+.|++.|.+|.+++.+.+.|        .+|++++++++.+ ++|||++||
T Consensus       133 ------iR-~g~~~~~~~~~~~~~a~~l~~aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~~~~~iPVianGg  205 (350)
T 3b0p_A          133 ------MR-LGLEGKETYRGLAQSVEAMAEAGVKVFVVHARSALLALSTKANREIPPLRHDWVHRLKGDFPQLTFVTNGG  205 (350)
T ss_dssp             ------EE-SCBTTCCCHHHHHHHHHHHHHTTCCEEEEECSCBC----------CCCCCHHHHHHHHHHCTTSEEEEESS
T ss_pred             ------Ee-cCcCccccHHHHHHHHHHHHHcCCCEEEEecCchhcccCcccccCCCcccHHHHHHHHHhCCCCeEEEECC
Confidence                  11 366543221 467899999999999999999876543333        4899999999887 899999999


Q ss_pred             CCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHH
Q 021156          266 VTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWH  307 (316)
Q Consensus       266 I~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~  307 (316)
                      |.|.+|+.++++ |  +++|++||++  +.+++.+.++.+.+
T Consensus       206 I~s~eda~~~l~-G--aD~V~iGRa~--l~~P~l~~~i~~~l  242 (350)
T 3b0p_A          206 IRSLEEALFHLK-R--VDGVMLGRAV--YEDPFVLEEADRRV  242 (350)
T ss_dssp             CCSHHHHHHHHT-T--SSEEEECHHH--HHCGGGGTTHHHHT
T ss_pred             cCCHHHHHHHHh-C--CCEEEECHHH--HhCcHHHHHHHHHh
Confidence            999999999997 7  9999999999  99999888876543

>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*

Probab=99.36  E-value=7.2e-14  Score=126.05  Aligned_cols=126  Identities=13%  Similarity=0.058  Sum_probs=96.7

Q ss_pred             ceeeecCCCCCCccccccccccCcc--cccccc-----cEEEEE---EEeeCCeEEEEEcccccCCCCCCCceeeecCCc
Q 021156           23 DLFWLHKNNNSSFYAPSSSLSRPSR--LSVRCA-----VRFRPC---IDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESD   92 (316)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----~~iIP~---IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~   92 (316)
                      .++|...++++|++|+|+. +++.+  ..++..     +++||.   |-=-+++|+|+.+|++                .
T Consensus        83 ipdLp~ee~~~~~~g~~~~-~~~~~~~~~~~~g~~~~~l~~I~~gYil~~P~~~~~rl~~g~~----------------~  145 (234)
T 2f6u_A           83 VPTVLNSADGDWITGKHAQ-WVRMHYENLQKFTEIIESEFIQIEGYIVLNPDSAVARVTKALC----------------N  145 (234)
T ss_dssp             EEEETTBSBGGGTTHHHHH-HHHTTGGGHHHHHHHHHSTTEEEEEEEECCTTSHHHHHTTBCC----------------C
T ss_pred             EcccCCCCCHHHHhhhHHH-HHHhhhhhHHHcCCcccceeeeecceEEECCCCceEEeecCCC----------------C
Confidence            4678899999999999999 66441  014444     789996   4445688999887632                1


Q ss_pred             cCHHHHHHHHHHcCCCcc--eEEEecCC--cccHHHHHHHHHhC-CCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeec
Q 021156           93 KSAAEFANLYKEDGLTGG--HAIMLGAD--PLSKAAAIEALHAY-PGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l--~lvDLda~--~~~~~~i~~~v~~~-~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      .+| +.++.|+++|.+++  |++||++.  ..+.+.+.++.+.+ ++|+++||||| .|+++++++ |||.||+||++.+
T Consensus       146 ~~~-e~~~~~a~~g~~~l~~~~Vyl~~~G~~~~~~~i~~i~~~~~~~Pv~vGgGI~s~e~a~~~~~-gAd~VIVGSa~v~  223 (234)
T 2f6u_A          146 IDK-ELAASYALVGEKLFNLPIIYIEYSGTYGNPELVAEVKKVLDKARLFYGGGIDSREKAREMLR-YADTIIVGNVIYE  223 (234)
T ss_dssp             CCH-HHHHHHHHHHHHTTCCSEEEEECTTSCCCHHHHHHHHHHCSSSEEEEESCCCSHHHHHHHHH-HSSEEEECHHHHH
T ss_pred             CCH-HHHHHHHHhhhhhcCCCEEEEeCCCCcchHHHHHHHHHhCCCCCEEEEecCCCHHHHHHHHh-CCCEEEEChHHHh
Confidence            478 79999999886555  99999974  23444444444567 89999999999 599999999 9999999999988


Q ss_pred             C
Q 021156          167 N  167 (316)
Q Consensus       167 ~  167 (316)
                      +
T Consensus       224 ~  224 (234)
T 2f6u_A          224 K  224 (234)
T ss_dssp             H
T ss_pred             C
Confidence            7

>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*

Probab=99.35  E-value=1.7e-11  Score=108.24  Aligned_cols=160  Identities=16%  Similarity=0.204  Sum_probs=117.5

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHhCCCcEEEec-CCC-HHHHHHHHHcCCCEEEeCCeeecCCCC
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAYPGGLQVGG-GIN-SDNSLSYIEEGATHVIVTSYVFNNGQM  170 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~~~pl~vGG-GIr-~e~~~~~l~~Gad~VVigt~~~~~~~~  170 (316)
                      .++.+.++.+.+.|++.+|+.+.+..  ....+.+..+.+++|+++|+ +++ .++++.++++||+.|.+++.   +   
T Consensus        19 ~~~~~~~~~~~~~G~~~i~l~~~~~~--~~~~i~~i~~~~~~~l~vg~g~~~~~~~i~~a~~~Gad~V~~~~~---~---   90 (212)
T 2v82_A           19 DEALAHVGAVIDAGFDAVEIPLNSPQ--WEQSIPAIVDAYGDKALIGAGTVLKPEQVDALARMGCQLIVTPNI---H---   90 (212)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEETTSTT--HHHHHHHHHHHHTTTSEEEEECCCSHHHHHHHHHTTCCEEECSSC---C---
T ss_pred             HHHHHHHHHHHHCCCCEEEEeCCChh--HHHHHHHHHHhCCCCeEEEeccccCHHHHHHHHHcCCCEEEeCCC---C---
Confidence            36788999999999999999777632  23344444555678888874 455 58899999999999987763   2   


Q ss_pred             CHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHH
Q 021156          171 DLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVA  250 (316)
Q Consensus       171 ~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~  250 (316)
                       ++++ +..+.+|. .++++  +.                   ++.+ +....+.|++.+.++.-+      ...++.++
T Consensus        91 -~~~~-~~~~~~g~-~~~~g--~~-------------------t~~e-~~~a~~~G~d~v~v~~t~------~~g~~~~~  139 (212)
T 2v82_A           91 -SEVI-RRAVGYGM-TVCPG--CA-------------------TATE-AFTALEAGAQALKIFPSS------AFGPQYIK  139 (212)
T ss_dssp             -HHHH-HHHHHTTC-EEECE--EC-------------------SHHH-HHHHHHTTCSEEEETTHH------HHCHHHHH
T ss_pred             -HHHH-HHHHHcCC-CEEee--cC-------------------CHHH-HHHHHHCCCCEEEEecCC------CCCHHHHH
Confidence             6655 44566763 33333  21                   2333 456678999988763211      12578899


Q ss_pred             HHhhcCC--CcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccC
Q 021156          251 LLGKYSP--IPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGG  296 (316)
Q Consensus       251 ~l~~~~~--iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g  296 (316)
                      ++++..+  +||++.|||. .+++.++++.|  +++|++|+++  |..
T Consensus       140 ~l~~~~~~~ipvia~GGI~-~~~i~~~~~~G--a~gv~vGsai--~~~  182 (212)
T 2v82_A          140 ALKAVLPSDIAVFAVGGVT-PENLAQWIDAG--CAGAGLGSDL--YRA  182 (212)
T ss_dssp             HHHTTSCTTCEEEEESSCC-TTTHHHHHHHT--CSEEEECTTT--CCT
T ss_pred             HHHHhccCCCeEEEeCCCC-HHHHHHHHHcC--CCEEEEChHH--hCC
Confidence            9988775  9999999998 89999999998  9999999999  865

>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A

Probab=99.35  E-value=3.1e-12  Score=115.25  Aligned_cols=110  Identities=15%  Similarity=0.087  Sum_probs=97.4

Q ss_pred             eEEEeeeeeecCCeeEEEe-CCcceec---ccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEE
Q 021156          186 RLVLDLSCRKKDGKYAIVT-DRWQKFS---DVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVT  261 (316)
Q Consensus       186 ~IvvslD~k~~~g~~~v~~-~gw~~~~---~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVI  261 (316)
                      +|++++|++  +|+ .|+. .||.+..   ..++.++++.+.+.|++.+.+++.+.++...+.+++.+++++ .+++|++
T Consensus         2 ~iip~id~~--~g~-~vk~~~G~~~~~~~~~~~~~~~a~~~~~~Gad~i~v~d~~~~~~~~~~~~~~i~~i~-~~~ipvi   77 (241)
T 1qo2_A            2 LVVPAIDLF--RGK-VARMIKGRKENTIFYEKDPVELVEKLIEEGFTLIHVVDLSNAIENSGENLPVLEKLS-EFAEHIQ   77 (241)
T ss_dssp             EEEEEEEEE--TTE-EEEEGGGCGGGEEEESSCHHHHHHHHHHTTCCCEEEEEHHHHHHCCCTTHHHHHHGG-GGGGGEE
T ss_pred             EEEEEEEee--CCE-EEEEeccccccceecCcCHHHHHHHHHHcCCCEEEEecccccccCCchhHHHHHHHH-hcCCcEE
Confidence            589999998  885 6654 6887654   458999999999999999999999888888899999999999 7899999


Q ss_pred             EEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHH
Q 021156          262 YAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDV  303 (316)
Q Consensus       262 asGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~  303 (316)
                      ++||+++.+++.++++.|  +++|++|+++  +.++..+.++
T Consensus        78 ~~Ggi~~~~~~~~~~~~G--ad~V~lg~~~--l~~p~~~~~~  115 (241)
T 1qo2_A           78 IGGGIRSLDYAEKLRKLG--YRRQIVSSKV--LEDPSFLKSL  115 (241)
T ss_dssp             EESSCCSHHHHHHHHHTT--CCEEEECHHH--HHCTTHHHHH
T ss_pred             EECCCCCHHHHHHHHHCC--CCEEEECchH--hhChHHHHHH
Confidence            999999999999999998  9999999999  9888766666

>4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp}

Probab=99.33  E-value=6e-12  Score=114.19  Aligned_cols=114  Identities=12%  Similarity=0.138  Sum_probs=94.7

Q ss_pred             eEEEeeeeeecCCeeEEEeCCcce----ecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEE
Q 021156          186 RLVLDLSCRKKDGKYAIVTDRWQK----FSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVT  261 (316)
Q Consensus       186 ~IvvslD~k~~~g~~~v~~~gw~~----~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVI  261 (316)
                      +|+++||++  +|+ .|+..++..    ...-+|.+.|+.+.+.|++++.+.|++..-.....++++++++++.+.+|+.
T Consensus         3 ~IIP~IDl~--~G~-vVrlv~G~~~~~~~~~~dP~~~a~~~~~~gad~lhvvDld~a~~~~~~~~~~i~~i~~~~~~pl~   79 (243)
T 4gj1_A            3 QIIPALDLI--DGE-VVRLVKGDYEQKKVYKYNPLKKFKEYEKAGAKELHLVDLTGAKDPSKRQFALIEKLAKEVSVNLQ   79 (243)
T ss_dssp             EEEEEEEEE--TTE-EEEEECSSSCEEEECCCCHHHHHHHHHHHTCCEEEEEEHHHHHCGGGCCHHHHHHHHHHCCSEEE
T ss_pred             EEEEEEEEE--CCe-EEEEEccCcCCCcEeCCCHHHHHHHHHHCCCCEEEEEecCcccccchhHHHHHHHHHHhcCCCeE
Confidence            689999998  886 777655431    2234899999999999999998888765444456799999999999999999


Q ss_pred             EEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHH
Q 021156          262 YAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAW  306 (316)
Q Consensus       262 asGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~  306 (316)
                      ++|||++.+|++++++.|  ++.|++|+++  ++++-.++++.+.
T Consensus        80 vGGGIrs~e~~~~~l~~G--adkVii~t~a--~~~p~li~e~~~~  120 (243)
T 4gj1_A           80 VGGGIRSKEEVKALLDCG--VKRVVIGSMA--IKDATLCLEILKE  120 (243)
T ss_dssp             EESSCCCHHHHHHHHHTT--CSEEEECTTT--TTCHHHHHHHHHH
T ss_pred             eccccccHHHHHHHHHcC--CCEEEEcccc--ccCCchHHHHHhc
Confidence            999999999999999999  9999999999  9887555555443

>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A*

Probab=99.33  E-value=1.5e-12  Score=121.00  Aligned_cols=171  Identities=21%  Similarity=0.185  Sum_probs=117.5

Q ss_pred             CHHHHHHHHHHcCCCcceE---EEecC----C--c-ccHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCC
Q 021156           94 SAAEFANLYKEDGLTGGHA---IMLGA----D--P-LSKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTS  162 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~l---vDLda----~--~-~~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt  162 (316)
                      .|.++|+.+.+.|++.+|+   +++|.    +  . .+...+.++.+.+++|++++.++. .++++.+.++|||.| .++
T Consensus        29 ~~~~~a~~~~~~Ga~~i~~~e~v~~~~~~~~G~~~~~~~~~i~~i~~~~~~Pvi~~~~~~~~~~~~~~~~aGad~v-~~~  107 (297)
T 2zbt_A           29 TTPEQAVIAEEAGAVAVMALERVPADIRAQGGVARMSDPKIIKEIMAAVSIPVMAKVRIGHFVEAMILEAIGVDFI-DES  107 (297)
T ss_dssp             SSHHHHHHHHHHTCSEEEECSSCHHHHHHTTCCCCCCCHHHHHHHHTTCSSCEEEEEETTCHHHHHHHHHTTCSEE-EEE
T ss_pred             chHHHHHHHHHCCCcEEEeccccchHHHhhcCCccCCCHHHHHHHHHhcCCCeEEEeccCCHHHHHHHHHCCCCEE-eee
Confidence            5789999999999999998   44441    1  1 233444444446789999988887 588999999999999 333


Q ss_pred             eeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEee--------
Q 021156          163 YVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHG--------  234 (316)
Q Consensus       163 ~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtd--------  234 (316)
                      ...+.    +++++.+.+.+.  .+.+++|+.                   ++. .+..+.+.|++.+.+|.        
T Consensus       108 ~~~~~----~~~~~~~~~~~~--~i~l~~~v~-------------------~~~-~~~~a~~~Gad~I~v~G~~~~g~~~  161 (297)
T 2zbt_A          108 EVLTP----ADEEHHIDKWKF--KVPFVCGAR-------------------NLG-EALRRIAEGAAMIRTKGEAGTGNVV  161 (297)
T ss_dssp             TTSCC----SCSSCCCCGGGC--SSCEEEEES-------------------SHH-HHHHHHHTTCSEEEECCCSSSCCTH
T ss_pred             CCCCh----HHHHHHHHHhCC--CceEEeecC-------------------CHH-HHHHHHHcCCCEEEEcccccCcchH
Confidence            21221    333444433221  234445542                   122 24445677777765552        


Q ss_pred             ------------------cCCc-----cccCCCCHHHHHHHhhcCCCcEE--EEeCCCCHHHHHHHHHhCCCcCEEEEcc
Q 021156          235 ------------------VDVE-----GKKLGIDDELVALLGKYSPIPVT--YAGGVTTMADLEKIKVAGIGRVDVTVGS  289 (316)
Q Consensus       235 ------------------i~~d-----G~~~G~d~eli~~l~~~~~iPVI--asGGI~s~eDi~~l~~~G~g~~gVivG~  289 (316)
                                        ++..     ++..+++++.++++++.+++|++  +.|||++.+|+.+++++|  +++|++|+
T Consensus       162 e~~~~~~~~~~~i~~~~g~t~~~~~~~~~~~~~~~~~i~~l~~~~~~pvi~~a~GGI~~~e~i~~~~~aG--adgvvvGs  239 (297)
T 2zbt_A          162 EAVRHARTMWKEIRYVQSLREDELMAYAKEIGAPFELVKWVHDHGRLPVVNFAAGGIATPADAALMMHLG--MDGVFVGS  239 (297)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHTCCHHHHHHHHHHSSCSSCEEBCSSCCSHHHHHHHHHTT--CSEEEECG
T ss_pred             HHHhhHHHHHHHHHHcCCcCCCCchhhhhcchhhHHHHHHHHHhcCCCcEEEeeCCCCCHHHHHHHHHcC--CCEEEEch
Confidence                              1111     12356789999999988889998  999999999999999998  99999999


Q ss_pred             chhhcc
Q 021156          290 ALDIFG  295 (316)
Q Consensus       290 Al~~~~  295 (316)
                      ++  |.
T Consensus       240 ai--~~  243 (297)
T 2zbt_A          240 GI--FK  243 (297)
T ss_dssp             GG--GG
T ss_pred             HH--hC
Confidence            99  74

>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*

Probab=99.28  E-value=1.1e-10  Score=103.76  Aligned_cols=162  Identities=17%  Similarity=0.127  Sum_probs=118.7

Q ss_pred             HHHHHHHHHHcCCCcceEEEecCCcccH---HHHHHHH----HhCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecC
Q 021156           95 AAEFANLYKEDGLTGGHAIMLGADPLSK---AAAIEAL----HAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNN  167 (316)
Q Consensus        95 p~e~a~~~~~~G~~~l~lvDLda~~~~~---~~i~~~v----~~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~  167 (316)
                      +.+.++.+.+.|++.+|+.+.+......   ..+.+.+    +..++|+++-     ++++.+.++|++.|.+|....  
T Consensus        33 ~~~~~~~~~~~G~~~i~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~v~v~-----~~~~~a~~~gad~v~l~~~~~--  105 (227)
T 2tps_A           33 PVTVVQKALKGGATLYQFREKGGDALTGEARIKFAEKAQAACREAGVPFIVN-----DDVELALNLKADGIHIGQEDA--  105 (227)
T ss_dssp             HHHHHHHHHHHTCSEEEECCCSTTCCCHHHHHHHHHHHHHHHHHHTCCEEEE-----SCHHHHHHHTCSEEEECTTSS--
T ss_pred             HHHHHHHHHHCCCCEEEEecCCCCHhHHHHHHHHHHHHHHHHHHcCCeEEEc-----CHHHHHHHcCCCEEEECCCcc--
Confidence            8889999999999999999887654333   3333332    3346778874     457788899999999976532  


Q ss_pred             CCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEe----ecCCccccCC
Q 021156          168 GQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVH----GVDVEGKKLG  243 (316)
Q Consensus       168 ~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvt----di~~dG~~~G  243 (316)
                           + +.++.+.+|.  +++.+++.                   ++.+ +..+.+.|++.+++.    .....|+...
T Consensus       106 -----~-~~~~~~~~g~--~~~~~s~~-------------------t~~e-~~~a~~~g~d~v~~~~v~~t~~~~~~~~~  157 (227)
T 2tps_A          106 -----N-AKEVRAAIGD--MILGVSAH-------------------TMSE-VKQAEEDGADYVGLGPIYPTETKKDTRAV  157 (227)
T ss_dssp             -----C-HHHHHHHHTT--SEEEEEEC-------------------SHHH-HHHHHHHTCSEEEECCSSCCCSSSSCCCC
T ss_pred             -----C-HHHHHHhcCC--cEEEEecC-------------------CHHH-HHHHHhCCCCEEEECCCcCCCCCCCCCCc
Confidence                 1 5666666764  45555542                   2334 666778899998862    2233333344


Q ss_pred             CCHHHHHHHhhcCC-CcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccC
Q 021156          244 IDDELVALLGKYSP-IPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGG  296 (316)
Q Consensus       244 ~d~eli~~l~~~~~-iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g  296 (316)
                      .+++.++++++.++ +|++++|||. .+++.++++.|  +++|++|+++  +..
T Consensus       158 ~~~~~l~~~~~~~~~~pvia~GGI~-~~nv~~~~~~G--a~gv~vgs~i--~~~  206 (227)
T 2tps_A          158 QGVSLIEAVRRQGISIPIVGIGGIT-IDNAAPVIQAG--ADGVSMISAI--SQA  206 (227)
T ss_dssp             CTTHHHHHHHHTTCCCCEEEESSCC-TTTSHHHHHTT--CSEEEESHHH--HTS
T ss_pred             cCHHHHHHHHHhCCCCCEEEEcCCC-HHHHHHHHHcC--CCEEEEhHHh--hcC
Confidence            58999999988777 9999999999 99999999988  9999999999  754

>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1

Probab=99.26  E-value=3e-12  Score=115.95  Aligned_cols=128  Identities=17%  Similarity=0.162  Sum_probs=98.7

Q ss_pred             ceeeecCCCCCCccccccccccCcccccccc-----cEEEEE-EEe--eCCeEEEEEcccccCCCCCCCceeeecCCccC
Q 021156           23 DLFWLHKNNNSSFYAPSSSLSRPSRLSVRCA-----VRFRPC-IDI--HKGKVKQIVGSTLQDSKDDGTKLVTNFESDKS   94 (316)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~iIP~-IDi--~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~   94 (316)
                      .++|...+++++++|.|+. +     .++..     +++||. ..+  -+++|+|+.++++                ..+
T Consensus        83 iPdLp~ee~~~~~~g~~~~-a-----~~~~g~~~~~l~~i~~gy~l~~P~~~~~rl~~~d~----------------~~~  140 (240)
T 1viz_A           83 IPSVLNSKNADWIVGMHQK-A-----MKEYGELMSMEEIVAEGYCIANPDCKAAALTEADA----------------DLN  140 (240)
T ss_dssp             EEEETTBSSGGGTTHHHHH-H-----HHHCHHHHHHSCEEEEEEEECCTTSHHHHHTTBCC----------------CCC
T ss_pred             EcccCcccChhhhcchhHH-H-----HHHcCCCCcceeeeecccEEECCCCceEEeeccCC----------------CCC
Confidence            3577888999999999998 3     24445     789995 222  3678888776532                136


Q ss_pred             HHHHHHHHHHcC-CCcceEEEecCCc-ccHHHHHHHH-HhC-CCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCC
Q 021156           95 AAEFANLYKEDG-LTGGHAIMLGADP-LSKAAAIEAL-HAY-PGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQ  169 (316)
Q Consensus        95 p~e~a~~~~~~G-~~~l~lvDLda~~-~~~~~i~~~v-~~~-~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~  169 (316)
                      |. .++.|+++| +.++|++||++.. ..+..+++.+ +.. ++|+++||||| .|+++++++ |||.||+||++.++  
T Consensus       141 ~~-~~~~~a~~g~~~~~~~VYl~s~G~~~~~~~i~~i~~~~~~~Pv~vGgGI~t~e~a~~~~~-gAd~VIVGSa~v~~--  216 (240)
T 1viz_A          141 MD-DIVAYARVSELLQLPIFYLEYSGVLGDIEAVKKTKAVLETSTLFYGGGIKDAETAKQYAE-HADVIVVGNAVYED--  216 (240)
T ss_dssp             HH-HHHHHHHHHHHTTCSEEEEECTTSCCCHHHHHHHHHTCSSSEEEEESSCCSHHHHHHHHT-TCSEEEECTHHHHC--
T ss_pred             HH-HHHHHHHhCcccCCCEEEEeCCCccChHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHh-CCCEEEEChHHHhC--
Confidence            77 888899888 8999999999732 2344444544 457 89999999999 599999999 99999999999997  


Q ss_pred             CCHH-HHHHH
Q 021156          170 MDLE-RLKDL  178 (316)
Q Consensus       170 ~~~e-li~ei  178 (316)
                        |+ +++++
T Consensus       217 --~~~~~~~v  224 (240)
T 1viz_A          217 --FDRALKTV  224 (240)
T ss_dssp             --HHHHHTHH
T ss_pred             --HHHHHHHH
Confidence              88 88884

>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1

Probab=99.26  E-value=1.2e-10  Score=102.40  Aligned_cols=164  Identities=20%  Similarity=0.121  Sum_probs=115.7

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCcccHHH----HHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCC
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADPLSKAA----AIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQ  169 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~----i~~~v~~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~  169 (316)
                      ++.+.++.+.+.|++.+++.+.+........    +.+.+...++++++-     ++++.+.++|++.|.+++....   
T Consensus        27 ~~~~~~~~~~~~G~~~i~l~~~~~~~~~~~~~~~~l~~~~~~~~v~v~v~-----~~~~~a~~~gad~v~l~~~~~~---   98 (215)
T 1xi3_A           27 PEVESVREALEGGATAIQMRIKNAPTREMYEIGKTLRQLTREYDALFFVD-----DRVDVALAVDADGVQLGPEDMP---   98 (215)
T ss_dssp             CHHHHHHHHHHTTCSEEEECCCSCCHHHHHHHHHHHHHHHHHTTCEEEEE-----SCHHHHHHHTCSEEEECTTSCC---
T ss_pred             hHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCeEEEc-----ChHHHHHHcCCCEEEECCccCC---
Confidence            6889999999999999999876544221122    222233456778874     5677888999999999864333   


Q ss_pred             CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccc---cCCCCH
Q 021156          170 MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGK---KLGIDD  246 (316)
Q Consensus       170 ~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~---~~G~d~  246 (316)
                        ++.++++.  .   .+++.+++.                   ++.+ +..+.+.|++.+++..+-..++   ....++
T Consensus        99 --~~~~~~~~--~---~~~~~v~~~-------------------t~~e-~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~  151 (215)
T 1xi3_A           99 --IEVAKEIA--P---NLIIGASVY-------------------SLEE-ALEAEKKGADYLGAGSVFPTKTKEDARVIGL  151 (215)
T ss_dssp             --HHHHHHHC--T---TSEEEEEES-------------------SHHH-HHHHHHHTCSEEEEECSSCC----CCCCCHH
T ss_pred             --HHHHHHhC--C---CCEEEEecC-------------------CHHH-HHHHHhcCCCEEEEcCCccCCCCCCCCCcCH
Confidence              45444442  1   234555542                   2334 4567788999998755322222   345689


Q ss_pred             HHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCc
Q 021156          247 ELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGN  297 (316)
Q Consensus       247 eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~  297 (316)
                      +.++++++..++|++++|||. .+++.++++.|  +++|++|+++  +..+
T Consensus       152 ~~l~~l~~~~~~pvia~GGI~-~~nv~~~~~~G--a~gv~vgs~i--~~~~  197 (215)
T 1xi3_A          152 EGLRKIVESVKIPVVAIGGIN-KDNAREVLKTG--VDGIAVISAV--MGAE  197 (215)
T ss_dssp             HHHHHHHHHCSSCEEEESSCC-TTTHHHHHTTT--CSEEEESHHH--HTSS
T ss_pred             HHHHHHHHhCCCCEEEECCcC-HHHHHHHHHcC--CCEEEEhHHH--hCCC
Confidence            999999887899999999999 99999999887  9999999999  7655

>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1

Probab=99.25  E-value=2.7e-11  Score=113.87  Aligned_cols=153  Identities=18%  Similarity=0.223  Sum_probs=112.0

Q ss_pred             CCcEEEecCCC--H-HHHHHHHHcCCCEEEeCC--------------eeecCCCCCHHHHHHHHHHhcCceEEEeeeeee
Q 021156          133 PGGLQVGGGIN--S-DNSLSYIEEGATHVIVTS--------------YVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRK  195 (316)
Q Consensus       133 ~~pl~vGGGIr--~-e~~~~~l~~Gad~VVigt--------------~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~  195 (316)
                      ++-+|++|.-.  . +.++.+.++ +|.|-|+.              .+.+    +++++.++.+.+. +.+-+.+-+| 
T Consensus        60 ~~~~QL~g~~~~~~~~aa~~a~~~-~d~Iein~gcP~~~~r~~~~G~~l~~----~~~~~~eiv~~v~-~~~~~pv~vK-  132 (318)
T 1vhn_A           60 NVAVQIFGSEPNELSEAARILSEK-YKWIDLNAGCPVRKVVKEGAGGALLK----DLRHFRYIVRELR-KSVSGKFSVK-  132 (318)
T ss_dssp             TEEEEEECSCHHHHHHHHHHHTTT-CSEEEEEECCCCHHHHHTTCGGGGGS----CHHHHHHHHHHHH-HHCSSEEEEE-
T ss_pred             eEEEEeCCCCHHHHHHHHHHHHHh-CCEEEEECCCCcHhcCCCCcccchhh----CHHHHHHHHHHHH-HhhCCCEEEE-
Confidence            34578885432  2 346666667 99887753              2223    3777777776662 3221223222 


Q ss_pred             cCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCC-CHHHHHHHhhcCCCcEEEEeCCCCHHHHHH
Q 021156          196 KDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGI-DDELVALLGKYSPIPVTYAGGVTTMADLEK  274 (316)
Q Consensus       196 ~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~-d~eli~~l~~~~~iPVIasGGI~s~eDi~~  274 (316)
                            +. .||...   +..++++.+++.|++.|.+|..++.+.+.|+ +|++++++++  ++|||++|||.+.+|+.+
T Consensus       133 ------ir-~G~~~~---~~~~~a~~l~~~G~d~i~v~g~~~~~~~~~~~~~~~i~~i~~--~ipVi~~GgI~s~~da~~  200 (318)
T 1vhn_A          133 ------TR-LGWEKN---EVEEIYRILVEEGVDEVFIHTRTVVQSFTGRAEWKALSVLEK--RIPTFVSGDIFTPEDAKR  200 (318)
T ss_dssp             ------EE-SCSSSC---CHHHHHHHHHHTTCCEEEEESSCTTTTTSSCCCGGGGGGSCC--SSCEEEESSCCSHHHHHH
T ss_pred             ------ec-CCCChH---HHHHHHHHHHHhCCCEEEEcCCCccccCCCCcCHHHHHHHHc--CCeEEEECCcCCHHHHHH
Confidence                  11 267642   3458999999999999999998877666664 8998888887  899999999999999999


Q ss_pred             HHH-hCCCcCEEEEccchhhccCcccHHHHHHHHH
Q 021156          275 IKV-AGIGRVDVTVGSALDIFGGNLAYKDVVAWHA  308 (316)
Q Consensus       275 l~~-~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~  308 (316)
                      +++ .|  +++|++||++  +.+|+.+.++.+.+.
T Consensus       201 ~l~~~g--ad~V~iGR~~--l~~P~l~~~~~~~~~  231 (318)
T 1vhn_A          201 ALEESG--CDGLLVARGA--IGRPWIFKQIKDFLR  231 (318)
T ss_dssp             HHHHHC--CSEEEESGGG--TTCTTHHHHHHHHHH
T ss_pred             HHHcCC--CCEEEECHHH--HhCcchHHHHHHHHh
Confidence            999 46  9999999999  999999998877554

>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1

Probab=99.22  E-value=3.8e-11  Score=108.36  Aligned_cols=114  Identities=21%  Similarity=0.237  Sum_probs=96.5

Q ss_pred             ceEEEeeeeeecCCeeEEE---eCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEE
Q 021156          185 QRLVLDLSCRKKDGKYAIV---TDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVT  261 (316)
Q Consensus       185 ~~IvvslD~k~~~g~~~v~---~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVI  261 (316)
                      .+|++++|++  +|+ .|+   ..+|. .+ .++.+.++.+.+.|++.+.+++.+.+++..+.+++.++++++.+++|++
T Consensus         5 ~~iip~id~~--~g~-~v~~~~~~~~~-~~-~d~~~~a~~~~~~Gad~i~v~d~~~~~~~~~~~~~~i~~i~~~~~iPvi   79 (252)
T 1ka9_F            5 KRIVPCLDVH--AGR-VVKGVNFVNLR-DA-GDPVEAARAYDEAGADELVFLDISATHEERAILLDVVARVAERVFIPLT   79 (252)
T ss_dssp             BEEEEEEEEE--TTE-ETTCCCSSCCS-ST-TCHHHHHHHHHHHTCSCEEEEECCSSTTCHHHHHHHHHHHHTTCCSCEE
T ss_pred             ceEEEEEEEE--CCE-EEEeecccCce-ec-CCHHHHHHHHHHcCCCEEEEEcCCccccCccccHHHHHHHHHhCCCCEE
Confidence            5899999998  884 332   33554 23 3789999999999999999999888877777789999999998999999


Q ss_pred             EEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHH
Q 021156          262 YAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWH  307 (316)
Q Consensus       262 asGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~  307 (316)
                      ++||+.+.+++.++++.|  +++|++|+++  ++++..++++.+..
T Consensus        80 ~~Ggi~~~~~~~~~~~~G--ad~V~lg~~~--l~~p~~~~~~~~~~  121 (252)
T 1ka9_F           80 VGGGVRSLEDARKLLLSG--ADKVSVNSAA--VRRPELIRELADHF  121 (252)
T ss_dssp             EESSCCSHHHHHHHHHHT--CSEEEECHHH--HHCTHHHHHHHHHH
T ss_pred             EECCcCCHHHHHHHHHcC--CCEEEEChHH--HhCcHHHHHHHHHc
Confidence            999999999999999998  9999999999  98886666665544

>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A

Probab=99.20  E-value=6.9e-11  Score=106.73  Aligned_cols=115  Identities=17%  Similarity=0.178  Sum_probs=95.0

Q ss_pred             ceEEEeeeeeecCCeeEEEeCC--cceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEE
Q 021156          185 QRLVLDLSCRKKDGKYAIVTDR--WQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTY  262 (316)
Q Consensus       185 ~~IvvslD~k~~~g~~~v~~~g--w~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIa  262 (316)
                      .+|+++||++  +|+ .|+..+  |.. ...++.++++.+++.|++.+.+++.+..+...+.+++.++++++.+++|+++
T Consensus         4 ~~iip~id~~--~g~-~v~~~~~~~~~-~~~d~~~~a~~~~~~Gad~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~   79 (253)
T 1thf_D            4 KRIIACLDVK--DGR-VVKGSNFENLR-DSGDPVELGKFYSEIGIDELVFLDITASVEKRKTMLELVEKVAEQIDIPFTV   79 (253)
T ss_dssp             CEEEEEEEEE--TTE-ECCCSCCTTSS-CTTCHHHHHHHHHHTTCCEEEEEESSCSSSHHHHHHHHHHHHHTTCCSCEEE
T ss_pred             CeEEEEEEEE--CCE-EEEeeccccee-eccCHHHHHHHHHHcCCCEEEEECCchhhcCCcccHHHHHHHHHhCCCCEEE
Confidence            5899999998  885 554333  333 2347899999999999999988888776655667899999999989999999


Q ss_pred             EeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHH
Q 021156          263 AGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWH  307 (316)
Q Consensus       263 sGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~  307 (316)
                      .|||.+++++.++++.|  +++|++|+++  +.++..+.++.+..
T Consensus        80 ~ggI~~~~~~~~~~~~G--ad~V~lg~~~--l~~p~~~~~~~~~~  120 (253)
T 1thf_D           80 GGGIHDFETASELILRG--ADKVSINTAA--VENPSLITQIAQTF  120 (253)
T ss_dssp             ESSCCSHHHHHHHHHTT--CSEEEESHHH--HHCTHHHHHHHHHH
T ss_pred             eCCCCCHHHHHHHHHcC--CCEEEEChHH--HhChHHHHHHHHHc
Confidence            99999999999999998  9999999999  88876666665544

>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A

Probab=99.14  E-value=2e-11  Score=109.77  Aligned_cols=133  Identities=11%  Similarity=0.102  Sum_probs=93.3

Q ss_pred             CceeeecCCCCCCccccccccccCccccccccc-----EEEEE--EEeeCC-eEEEEEcccccCCCCCCCceeeecCCcc
Q 021156           22 SDLFWLHKNNNSSFYAPSSSLSRPSRLSVRCAV-----RFRPC--IDIHKG-KVKQIVGSTLQDSKDDGTKLVTNFESDK   93 (316)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~iIP~--IDi~~G-~vvr~~~g~~~~~~y~~~~~~~~~~~~~   93 (316)
                      ..++|+.++||+|++|+|+. +     +++...     ++||.  |-+..+ .+-|+.+.             .+.   .
T Consensus        85 l~pslln~~~~~~i~g~~~~-a-----~~~~gl~~~~~e~i~~gYivv~p~s~v~~v~~a-------------~~~---~  142 (235)
T 3w01_A           85 FVPTVLNSTDVAFHNGTLLE-A-----LKTYGHSIDFEEVIFEGYVVCNADSKVAKHTKA-------------NTD---L  142 (235)
T ss_dssp             EEEEETTBSSGGGTTHHHHH-H-----HHHHGGGCCGGGEEEEEEEECCSSSHHHHHTTB-------------CCC---C
T ss_pred             EEccccCCCCcchhhhHHHH-H-----HHHcCCCCcccceeeeeEEEECCCCChhhcccC-------------CcC---C
Confidence            35789999999999999999 4     366677     99997  444333 23322111             111   1


Q ss_pred             CHHHHHHHHHH-cC-CCcceEEEecCCc-ccHHHHHHHHHh-C-CCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecC
Q 021156           94 SAAEFANLYKE-DG-LTGGHAIMLGADP-LSKAAAIEALHA-Y-PGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNN  167 (316)
Q Consensus        94 ~p~e~a~~~~~-~G-~~~l~lvDLda~~-~~~~~i~~~v~~-~-~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~  167 (316)
                      +|.+ +..|+. ++ +.++.++|+++.. ..+..+++.+++ . +.|+++||||| .|+++++.+ |||.||+||++.+|
T Consensus       143 ~~e~-iaa~A~~a~~~~g~~~vY~e~sG~~g~~~~v~~ir~~~~~~pv~vGfGI~~~e~a~~~~~-gAD~VVVGSai~~~  220 (235)
T 3w01_A          143 TTED-LEAYAQMVNHMYRLPVMYIEYSGIYGDVSKVQAVSEHLTETQLFYGGGISSEQQATEMAA-IADTIIVGDIIYKD  220 (235)
T ss_dssp             CHHH-HHHHHHHHHHTTCCSEEEEECTTSCCCHHHHHHHHTTCSSSEEEEESCCCSHHHHHHHHT-TSSEEEECTHHHHC
T ss_pred             CHHH-HHHHHHHHHHHcCCCEEEEecCCCcCCHHHHHHHHHhcCCCCEEEECCcCCHHHHHHHHc-CCCEEEECCceecC
Confidence            4654 444544 33 6667777776531 235566666664 5 78999999999 599999888 99999999999997


Q ss_pred             CCCCHHHHHHHHHHh
Q 021156          168 GQMDLERLKDLVRVV  182 (316)
Q Consensus       168 ~~~~~eli~ei~~~~  182 (316)
                          |+.+.++++.+
T Consensus       221 ----~~~~~e~v~~v  231 (235)
T 3w01_A          221 ----IKKALKTVKIK  231 (235)
T ss_dssp             ----HHHHHHTTCC-
T ss_pred             ----HHHHHHHHHHH
Confidence                99999887655

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.14  E-value=2.9e-10  Score=112.93  Aligned_cols=175  Identities=17%  Similarity=0.122  Sum_probs=97.3

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCCc---ccHHHHHHHHH----------hCCCcEEEecCCCH-HHHHHHHHcCCCEE
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGADP---LSKAAAIEALH----------AYPGGLQVGGGINS-DNSLSYIEEGATHV  158 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~~---~~~~~i~~~v~----------~~~~pl~vGGGIr~-e~~~~~l~~Gad~V  158 (316)
                      .+..++.+.+.+.+...+.++|-++.-   .....+.+...          ...+...+|.+... +.++.++++|+|.+
T Consensus       166 ~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~~p~a~kd~~grl~v~aavG~~~~~~~~a~~l~~aG~d~I  245 (490)
T 4avf_A          166 TPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKAKTYPLASKDEQGRLRVGAAVGTGADTGERVAALVAAGVDVV  245 (490)
T ss_dssp             -----------------------------------------CTTCCBCTTSCBCCEEEECSSTTHHHHHHHHHHTTCSEE
T ss_pred             CcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhhccCcchhhhccCcceeeeeeccccchHHHHHHHhhcccceE
Confidence            345567777778888999999965431   12222333221          11233455555554 88999999999999


Q ss_pred             EeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEE------
Q 021156          159 IVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLV------  232 (316)
Q Consensus       159 Vigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilv------  232 (316)
                      +++++.-.. +...+.++++.+.++ +..++.-++                    ...+.++.+.+.|++.+.+      
T Consensus       246 ~id~a~g~~-~~~~~~v~~i~~~~p-~~~Vi~g~v--------------------~t~e~a~~l~~aGaD~I~vg~g~Gs  303 (490)
T 4avf_A          246 VVDTAHGHS-KGVIERVRWVKQTFP-DVQVIGGNI--------------------ATAEAAKALAEAGADAVKVGIGPGS  303 (490)
T ss_dssp             EEECSCCSB-HHHHHHHHHHHHHCT-TSEEEEEEE--------------------CSHHHHHHHHHTTCSEEEECSSCST
T ss_pred             EecccCCcc-hhHHHHHHHHHHHCC-CceEEEeee--------------------CcHHHHHHHHHcCCCEEEECCCCCc
Confidence            999876442 112478888888884 322222222                    1247789999999999886      


Q ss_pred             eecCCccccC-CCCHHHHHHHhhc---CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          233 HGVDVEGKKL-GIDDELVALLGKY---SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       233 tdi~~dG~~~-G~d~eli~~l~~~---~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      +..++..+.. .++++++.++++.   .++|||++|||++.+|+.+++.+|  +++|++|+++
T Consensus       304 ~~~t~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~G--Ad~V~vGs~~  364 (490)
T 4avf_A          304 ICTTRIVAGVGVPQISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAG--AYCVMMGSMF  364 (490)
T ss_dssp             TCHHHHHTCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHHT--CSEEEECTTT
T ss_pred             CCCccccCCCCccHHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHcC--CCeeeecHHH
Confidence            1112211222 4688888888763   479999999999999999999998  9999999998

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.12  E-value=1.2e-09  Score=108.91  Aligned_cols=174  Identities=13%  Similarity=0.085  Sum_probs=122.3

Q ss_pred             ccCHHHHHHHHHHcCCCcceEEEecCCc---ccHHHHHHHHHh--------CCCcEEEecCC--CH-HHHHHHHHcCCCE
Q 021156           92 DKSAAEFANLYKEDGLTGGHAIMLGADP---LSKAAAIEALHA--------YPGGLQVGGGI--NS-DNSLSYIEEGATH  157 (316)
Q Consensus        92 ~~~p~e~a~~~~~~G~~~l~lvDLda~~---~~~~~i~~~v~~--------~~~pl~vGGGI--r~-e~~~~~l~~Gad~  157 (316)
                      +.++.++.+.+.+.+...+.++|-++.-   .....+.+.+..        ...++.++-|.  .. +.++.++++|++.
T Consensus       192 ~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~~~p~a~~D~~~rl~V~aavg~~~d~~era~aLveaGvd~  271 (511)
T 3usb_A          192 GTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEFPNSAKDKQGRLLVGAAVGVTADAMTRIDALVKASVDA  271 (511)
T ss_dssp             TCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHCTTCCBCTTSCBCCEEEECSSTTHHHHHHHHHHTTCSE
T ss_pred             CCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhhhcccchhhhccceeeeeeeeeccchHHHHHHHHhhccce
Confidence            4578889999999999999999987641   234445554432        12344455544  33 7799999999999


Q ss_pred             EEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCC
Q 021156          158 VIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDV  237 (316)
Q Consensus       158 VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~  237 (316)
                      ++++++--. .+-..++++++.+.|+ +..++.-++.                    ..+.++.+.+.|++.+.+ ++..
T Consensus       272 I~Id~a~g~-~~~v~~~i~~i~~~~~-~~~vi~g~v~--------------------t~e~a~~~~~aGad~i~v-g~g~  328 (511)
T 3usb_A          272 IVLDTAHGH-SQGVIDKVKEVRAKYP-SLNIIAGNVA--------------------TAEATKALIEAGANVVKV-GIGP  328 (511)
T ss_dssp             EEEECSCTT-SHHHHHHHHHHHHHCT-TSEEEEEEEC--------------------SHHHHHHHHHHTCSEEEE-CSSC
T ss_pred             EEecccccc-hhhhhhHHHHHHHhCC-CceEEeeeec--------------------cHHHHHHHHHhCCCEEEE-CCCC
Confidence            999876321 1112478888888885 3333333331                    247789999999999875 2211


Q ss_pred             ---------ccccCCCCHHHHHHHh---hcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          238 ---------EGKKLGIDDELVALLG---KYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       238 ---------dG~~~G~d~eli~~l~---~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                               +| ...++++.+.++.   +..++|||++|||++.+|+.+++.+|  +++|++|+++
T Consensus       329 gsi~~~~~~~g-~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kala~G--A~~V~vGs~~  391 (511)
T 3usb_A          329 GSICTTRVVAG-VGVPQLTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAG--AHVVMLGSMF  391 (511)
T ss_dssp             STTCCHHHHHC-CCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTT--CSEEEESTTT
T ss_pred             ccccccccccC-CCCCcHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHhC--chhheecHHH
Confidence                     12 1245788777764   34579999999999999999999998  9999999986

>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0

Probab=99.11  E-value=2.6e-09  Score=93.84  Aligned_cols=144  Identities=20%  Similarity=0.166  Sum_probs=104.6

Q ss_pred             HHHHHH-h-CCCcEEEecCCC--HHH-HHHHHHcCCCEEEeCCeee-cCCCCCHHHHHHHHHHhcCceEEEeeeeeecCC
Q 021156          125 AIEALH-A-YPGGLQVGGGIN--SDN-SLSYIEEGATHVIVTSYVF-NNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDG  198 (316)
Q Consensus       125 i~~~v~-~-~~~pl~vGGGIr--~e~-~~~~l~~Gad~VVigt~~~-~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g  198 (316)
                      +++.++ . .+.|+.++--+.  .+. ++.+.++|||.|++..... ++    ++.+.+..+++| -++++  ++.  + 
T Consensus        43 ~i~~ir~~~~~~~i~~~~~~~~~~~~~~~~~~~~Gad~v~v~~~~~~~~----~~~~~~~~~~~g-~~~~v--~~~--~-  112 (211)
T 3f4w_A           43 AIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGVTDVLT----IQSCIRAAKEAG-KQVVV--DMI--C-  112 (211)
T ss_dssp             HHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSCHHH----HHHHHHHHHHHT-CEEEE--ECT--T-
T ss_pred             HHHHHHHhCCCCEEEEEEEeccchHHHHHHHHhcCCCEEEEeCCCChhH----HHHHHHHHHHcC-CeEEE--Eec--C-
Confidence            445555 3 378887766564  355 8999999999999987654 22    455566666776 33333  321  0 


Q ss_pred             eeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCC-CHHHHHHHhhcC-CCcEEEEeCCCCHHHHHHHH
Q 021156          199 KYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGI-DDELVALLGKYS-PIPVTYAGGVTTMADLEKIK  276 (316)
Q Consensus       199 ~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~-d~eli~~l~~~~-~iPVIasGGI~s~eDi~~l~  276 (316)
                             -      .++.+.++.+.+.|++.+.++ ...+|...++ +++.++++++.. ++|++++|||+ .+++.++.
T Consensus       113 -------~------~t~~~~~~~~~~~g~d~i~v~-~g~~g~~~~~~~~~~i~~l~~~~~~~~i~~~gGI~-~~~~~~~~  177 (211)
T 3f4w_A          113 -------V------DDLPARVRLLEEAGADMLAVH-TGTDQQAAGRKPIDDLITMLKVRRKARIAVAGGIS-SQTVKDYA  177 (211)
T ss_dssp             -------C------SSHHHHHHHHHHHTCCEEEEE-CCHHHHHTTCCSHHHHHHHHHHCSSCEEEEESSCC-TTTHHHHH
T ss_pred             -------C------CCHHHHHHHHHHcCCCEEEEc-CCCcccccCCCCHHHHHHHHHHcCCCcEEEECCCC-HHHHHHHH
Confidence                   0      135688899999999986543 4455555454 789999998875 89999999996 99999999


Q ss_pred             HhCCCcCEEEEccchhhccCc
Q 021156          277 VAGIGRVDVTVGSALDIFGGN  297 (316)
Q Consensus       277 ~~G~g~~gVivG~Al~~~~g~  297 (316)
                      +.|  ++++++|+++  +...
T Consensus       178 ~~G--ad~vvvGsai--~~~~  194 (211)
T 3f4w_A          178 LLG--PDVVIVGSAI--THAA  194 (211)
T ss_dssp             TTC--CSEEEECHHH--HTCS
T ss_pred             HcC--CCEEEECHHH--cCCC
Confidence            998  9999999999  7654

>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*

Probab=99.06  E-value=9.5e-10  Score=102.18  Aligned_cols=157  Identities=18%  Similarity=0.144  Sum_probs=105.5

Q ss_pred             CcEEEecCC-C-HHHHHHHHH--cCCCEEEeCC--eeecCC--C--CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEE
Q 021156          134 GGLQVGGGI-N-SDNSLSYIE--EGATHVIVTS--YVFNNG--Q--MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIV  203 (316)
Q Consensus       134 ~pl~vGGGI-r-~e~~~~~l~--~Gad~VVigt--~~~~~~--~--~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~  203 (316)
                      +.++++|+- . ..++.+.+.  +|+|.|-++-  -..+.+  .  .+++++.++.+.+. +.+-+.+-         ++
T Consensus       101 ~~v~l~~~~~~~~~~~a~~~~~~~g~d~iei~~~~p~~~~g~~~~g~~~~~~~eii~~v~-~~~~~pv~---------vk  170 (311)
T 1ep3_A          101 IIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVKHGGQAFGTDPEVAAALVKACK-AVSKVPLY---------VK  170 (311)
T ss_dssp             EEEEECCSSHHHHHHHHHHHTTSTTEEEEEEECCSEEGGGTTEEGGGCHHHHHHHHHHHH-HHCSSCEE---------EE
T ss_pred             EEEEEcCCCHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCchhhhcCCHHHHHHHHHHHH-HhcCCCEE---------EE
Confidence            445677763 3 344444444  8999886642  221110  0  13777777776662 32211222         22


Q ss_pred             eC-CcceecccCHHHHHHHHHHcCCCEEEEee---------cCC-------ccccCCCC-----HHHHHHHhhcCCCcEE
Q 021156          204 TD-RWQKFSDVYLDERVLDFLASYADEFLVHG---------VDV-------EGKKLGID-----DELVALLGKYSPIPVT  261 (316)
Q Consensus       204 ~~-gw~~~~~~~~~e~a~~~~~~Ga~~ilvtd---------i~~-------dG~~~G~d-----~eli~~l~~~~~iPVI  261 (316)
                      +. +|.     ++.++++.+.+.|++.+.+++         .++       .|.+.|+.     +++++++++.+++|||
T Consensus       171 ~~~~~~-----~~~~~a~~l~~~G~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~~~~~i~~i~~~~~ipvi  245 (311)
T 1ep3_A          171 LSPNVT-----DIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDVDIPII  245 (311)
T ss_dssp             ECSCSS-----CSHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTTCSSCEE
T ss_pred             ECCChH-----HHHHHHHHHHHcCCCEEEEeCCCcccccCcccCCccccCCCCcccCccchHHHHHHHHHHHHhcCCCEE
Confidence            22 332     356889999999999998843         122       23345553     4788899888899999


Q ss_pred             EEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHHh
Q 021156          262 YAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       262 asGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~~  309 (316)
                      ++|||++.+|+.++++.|  +++|++|+++  +.++..++++.+-+.+
T Consensus       246 a~GGI~~~~d~~~~l~~G--Ad~V~vg~~~--l~~p~~~~~i~~~l~~  289 (311)
T 1ep3_A          246 GMGGVANAQDVLEMYMAG--ASAVAVGTAN--FADPFVCPKIIDKLPE  289 (311)
T ss_dssp             ECSSCCSHHHHHHHHHHT--CSEEEECTHH--HHCTTHHHHHHHHHHH
T ss_pred             EECCcCCHHHHHHHHHcC--CCEEEECHHH--HcCcHHHHHHHHHHHH
Confidence            999999999999999998  9999999999  8899888887664443

>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}

Probab=99.02  E-value=6.5e-09  Score=99.40  Aligned_cols=166  Identities=17%  Similarity=0.160  Sum_probs=110.3

Q ss_pred             HHHHHHHHcC-CCcceEEEecCCcccHHHHHHHHH-hCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHH
Q 021156           97 EFANLYKEDG-LTGGHAIMLGADPLSKAAAIEALH-AYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLE  173 (316)
Q Consensus        97 e~a~~~~~~G-~~~l~lvDLda~~~~~~~i~~~v~-~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~e  173 (316)
                      ++|...+++| +.-+|   -+-........++.++ ....|+.++.|++ .+.++.++++|+|.|++++..-.. +...+
T Consensus        60 ~lA~avA~~GGlgii~---~~~s~e~~~~~I~~vk~~~~~pvga~ig~~~~e~a~~l~eaGad~I~ld~a~G~~-~~~~~  135 (361)
T 3khj_A           60 LMAVGMARLGGIGIIH---KNMDMESQVNEVLKVKNSGGLRVGAAIGVNEIERAKLLVEAGVDVIVLDSAHGHS-LNIIR  135 (361)
T ss_dssp             HHHHHHHHTTCEEEEC---SSSCHHHHHHHHHHHHHTTCCCCEEEECTTCHHHHHHHHHTTCSEEEECCSCCSB-HHHHH
T ss_pred             HHHHHHHHcCCCeEEe---cCCCHHHHHHHHHHHHhccCceEEEEeCCCHHHHHHHHHHcCcCeEEEeCCCCCc-HHHHH
Confidence            5888788776 33333   1111111222333343 3568899999998 588999999999999998765321 00124


Q ss_pred             HHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecC-------CccccC-CCC
Q 021156          174 RLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVD-------VEGKKL-GID  245 (316)
Q Consensus       174 li~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~-------~dG~~~-G~d  245 (316)
                      .++++.+.++ -.+++. .+                    ...+.++.+.+.|++.+.+ .+.       +.-+.. .++
T Consensus       136 ~i~~i~~~~~-~~Vivg-~v--------------------~t~e~A~~l~~aGaD~I~V-G~~~Gs~~~tr~~~g~g~p~  192 (361)
T 3khj_A          136 TLKEIKSKMN-IDVIVG-NV--------------------VTEEATKELIENGADGIKV-GIGPGSICTTRIVAGVGVPQ  192 (361)
T ss_dssp             HHHHHHHHCC-CEEEEE-EE--------------------CSHHHHHHHHHTTCSEEEE-CSSCCTTCCHHHHTCBCCCH
T ss_pred             HHHHHHHhcC-CcEEEc-cC--------------------CCHHHHHHHHHcCcCEEEE-ecCCCcCCCcccccCCCCCc
Confidence            5666666663 233221 11                    1246789999999999887 221       111112 367


Q ss_pred             HHHHHHHhh---cCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          246 DELVALLGK---YSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       246 ~eli~~l~~---~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      ++.+.++++   .+++|||++|||++.+|+.+++.+|  +++|++|+++
T Consensus       193 ~~~i~~v~~~~~~~~iPVIA~GGI~~~~di~kala~G--Ad~V~vGs~~  239 (361)
T 3khj_A          193 ITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVG--ASSVMIGSIL  239 (361)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEESCCCSHHHHHHHHHHT--CSEEEESTTT
T ss_pred             HHHHHHHHHHHhhcCCeEEEECCCCCHHHHHHHHHcC--CCEEEEChhh
Confidence            887777753   3589999999999999999999998  9999999998

>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}

Probab=99.00  E-value=6.4e-09  Score=98.02  Aligned_cols=166  Identities=20%  Similarity=0.165  Sum_probs=116.3

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCCcccHHH---HHHHHHh-CCCcEEEecCC---CH-HHHHHHHHcCCCEEEeCCee
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGADPLSKAA---AIEALHA-YPGGLQVGGGI---NS-DNSLSYIEEGATHVIVTSYV  164 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~---i~~~v~~-~~~pl~vGGGI---r~-e~~~~~l~~Gad~VVigt~~  164 (316)
                      .+|. ++....++|..++  +-.  ...+.+.   .++.+++ .+.|+.|+-.+   +. +.++.+.+.|++.|.++.. 
T Consensus        38 s~~~-la~av~~aGglG~--i~~--~~~~~~~l~~~i~~i~~~~~~p~gVnl~~~~~~~~~~~~~~~~~g~d~V~l~~g-  111 (326)
T 3bo9_A           38 GTPT-LAAAVSEAGGLGI--IGS--GAMKPDDLRKAISELRQKTDKPFGVNIILVSPWADDLVKVCIEEKVPVVTFGAG-  111 (326)
T ss_dssp             SCHH-HHHHHHHTTSBEE--EEC--TTCCHHHHHHHHHHHHTTCSSCEEEEEETTSTTHHHHHHHHHHTTCSEEEEESS-
T ss_pred             CCHH-HHHHHHhCCCcEE--eCC--CCCCHHHHHHHHHHHHHhcCCCEEEEEeccCCCHHHHHHHHHHCCCCEEEECCC-
Confidence            3564 7888888884433  322  1122233   3333443 45788888777   23 5688889999999998553 


Q ss_pred             ecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCcccc-CC
Q 021156          165 FNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKK-LG  243 (316)
Q Consensus       165 ~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~-~G  243 (316)
                        +   .++.++.+. ..| -++++.+                      ...+.++.+.+.|++.++++.....|.. .-
T Consensus       112 --~---p~~~~~~l~-~~g-~~v~~~v----------------------~s~~~a~~a~~~GaD~i~v~g~~~GG~~G~~  162 (326)
T 3bo9_A          112 --N---PTKYIRELK-ENG-TKVIPVV----------------------ASDSLARMVERAGADAVIAEGMESGGHIGEV  162 (326)
T ss_dssp             --C---CHHHHHHHH-HTT-CEEEEEE----------------------SSHHHHHHHHHTTCSCEEEECTTSSEECCSS
T ss_pred             --C---cHHHHHHHH-HcC-CcEEEEc----------------------CCHHHHHHHHHcCCCEEEEECCCCCccCCCc
Confidence              2   145555554 343 2333222                      1236778889999999999888766542 23


Q ss_pred             CCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCc
Q 021156          244 IDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGN  297 (316)
Q Consensus       244 ~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~  297 (316)
                      +++++++++.+.+++|||++|||++.+|+.+++.+|  +++|.+|+++  +..+
T Consensus       163 ~~~~ll~~i~~~~~iPviaaGGI~~~~dv~~al~~G--A~gV~vGs~~--~~~~  212 (326)
T 3bo9_A          163 TTFVLVNKVSRSVNIPVIAAGGIADGRGMAAAFALG--AEAVQMGTRF--VASV  212 (326)
T ss_dssp             CHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHT--CSEEEESHHH--HTBS
T ss_pred             cHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHhC--CCEEEechHH--HcCc
Confidence            699999999988899999999999999999999998  9999999999  6544

>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*

Probab=98.96  E-value=2.2e-09  Score=98.53  Aligned_cols=176  Identities=14%  Similarity=-0.007  Sum_probs=114.7

Q ss_pred             HHHHHHHHcCCCcceEEEecCC---cccHHHHHHHHHh-CCCcEEE------ecCCCHHHHHHHHHcCCCEEEeCCeeec
Q 021156           97 EFANLYKEDGLTGGHAIMLGAD---PLSKAAAIEALHA-YPGGLQV------GGGINSDNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        97 e~a~~~~~~G~~~l~lvDLda~---~~~~~~i~~~v~~-~~~pl~v------GGGIr~e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      +.++...+.|.+.+.|= =++.   ..+...+++.+++ +++|+..      |..--.       .-|||.+.+=|..=.
T Consensus        57 ~~~~~~~~sGtDai~VG-S~~vt~~~~~~~~~v~~ik~~~~lPvil~fPP~~g~~~~i-------~~~aDa~l~psvlNs  128 (286)
T 3vk5_A           57 EKAAELTRLGFAAVLLA-STDYESFESHMEPYVAAVKAATPLPVVLHFPPRPGAGFPV-------VRGADALLLPALLGS  128 (286)
T ss_dssp             HHHHHHHHTTCSCEEEE-CSCCSSHHHHHHHHHHHHHHHCSSCEEEECCCBTTTBSCC-------CTTCSEEEEEEETTB
T ss_pred             HHHHHHHhcCCCEEEEc-cCCCCcchHHHHHHHHHHHHhCCCCEEEECCCCCCCcccc-------ccCCCEEEEEEEecC
Confidence            36777778899988777 3322   2455666777776 8999998      544222       247887766444322


Q ss_pred             CCCCCHHHHHHH---------H----HHhcCceEE--EeeeeeecCC-eeEEEeCCcceecccCH---HHHHHHHHHcCC
Q 021156          167 NGQMDLERLKDL---------V----RVVGKQRLV--LDLSCRKKDG-KYAIVTDRWQKFSDVYL---DERVLDFLASYA  227 (316)
Q Consensus       167 ~~~~~~eli~ei---------~----~~~G~~~Iv--vslD~k~~~g-~~~v~~~gw~~~~~~~~---~e~a~~~~~~Ga  227 (316)
                      +   |+.++-..         .    ++||  .++  ..|+++  +| + .|...+.....+.+.   ...+......|.
T Consensus       129 ~---n~~~i~g~~~~~~aa~~v~~~~~~~g--e~ip~gYL~v~--~g~k-~V~fv~~~~~~~~e~A~~~aYa~~gad~G~  200 (286)
T 3vk5_A          129 G---DDYFVWKSFLETLAAFPGRIPREEWP--ELLLTVALTFG--EDPR-TGDLLGTVPVSTASTEEIDRYLHVARAFGF  200 (286)
T ss_dssp             S---SHHHHTHHHHHHHHHCSTTSCGGGCC--EEEEEEEEECS--CCHH-HHHHHCBCCCCCSSSHHHHHHHHHHHHTTC
T ss_pred             C---CcccccCcHHHHHHhHHHHHHHHHhC--CcceEEEEEEC--CCCc-eeeeeCCCCCCCHHHHHHHHHHHHHHHcCC
Confidence            2   47776665         3    5665  343  344554  45 1 111112222222222   233334444444


Q ss_pred             CEEEEeecCCccccCCCCHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCc
Q 021156          228 DEFLVHGVDVEGKKLGIDDELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGN  297 (316)
Q Consensus       228 ~~ilvtdi~~dG~~~G~d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~  297 (316)
                       +++++|...    +..+.++++++++.+  ++|++++|||+|.+|++++++.|  +++|+||+++  +++.
T Consensus       201 -~lV~LD~~~----~~v~~e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll~aG--AD~VVVGSAa--v~d~  263 (286)
T 3vk5_A          201 -HMVYLYSRN----EHVPPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDSG--ADYVGFAGAL--EQPD  263 (286)
T ss_dssp             -SEEEEECSS----SCCCHHHHHHHHHHSCTTCEEEEESSCCSHHHHHHHHHTT--CSEEEESGGG--SSTT
T ss_pred             -CEEEEcCCC----CcCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHcC--CCEEEECchh--hcCC
Confidence             466777643    677999999999988  89999999999999999999998  9999999999  9874

>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae}

Probab=98.93  E-value=1.6e-09  Score=99.19  Aligned_cols=109  Identities=13%  Similarity=0.010  Sum_probs=84.9

Q ss_pred             eEEEeeeeeecCCeeEEEeCCcc--ee----------cccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHh
Q 021156          186 RLVLDLSCRKKDGKYAIVTDRWQ--KF----------SDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLG  253 (316)
Q Consensus       186 ~IvvslD~k~~~g~~~v~~~gw~--~~----------~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~  253 (316)
                      ||+++||++  +|+ .|+..++.  +.          ..-++.++|+.+.+.|++++.+.|++.      .|.+.+++++
T Consensus         2 riiP~iDl~--~G~-~V~~~~G~~~~~~~~~~~~~~~~~~dp~~~A~~~~~~Ga~~l~vvDL~~------~n~~~i~~i~   72 (260)
T 2agk_A            2 KFIGCIDLH--NGE-VKQIVGGTLTSKKEDVPKTNFVSQHPSSYYAKLYKDRDVQGCHVIKLGP------NNDDAAREAL   72 (260)
T ss_dssp             CEECEEEEE--TTE-ECC--------------------CCCHHHHHHHHHHTTCTTCEEEEESS------SCHHHHHHHH
T ss_pred             eEEEEEEEE--CCE-EEEccccccccccccccccccccCCCHHHHHHHHHHcCCCEEEEEeCCC------CCHHHHHHHH
Confidence            789999998  886 66655431  11          224799999999999999987777774      7899999999


Q ss_pred             hcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccC--cccHHHHHHHHHh
Q 021156          254 KYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGG--NLAYKDVVAWHAQ  309 (316)
Q Consensus       254 ~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g--~~~~~~~~~~~~~  309 (316)
                      +.+++|++++|||++. |+.+++ .|  ++.|++|+++  +++  ++.++.+.+++++
T Consensus        73 ~~~~~pv~vgGGir~~-~~~~~l-~G--a~~Viigs~a--~~~~g~~~p~~~~~~~~~  124 (260)
T 2agk_A           73 QESPQFLQVGGGINDT-NCLEWL-KW--ASKVIVTSWL--FTKEGHFQLKRLERLTEL  124 (260)
T ss_dssp             HHSTTTSEEESSCCTT-THHHHT-TT--CSCEEECGGG--BCTTCCBCHHHHHHHHHH
T ss_pred             hcCCceEEEeCCCCHH-HHHHHh-cC--CCEEEECcHH--HhhcCCCCHHHHHHHHHH
Confidence            9899999999999987 999999 87  9999999999  775  4445555555554

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=98.93  E-value=4.3e-09  Score=104.66  Aligned_cols=175  Identities=16%  Similarity=0.124  Sum_probs=111.7

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCCc---ccHHHHHHHHH------hCCCcEEEecCC----C-HHHHHHHHHcCCCEE
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGADP---LSKAAAIEALH------AYPGGLQVGGGI----N-SDNSLSYIEEGATHV  158 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~~---~~~~~i~~~v~------~~~~pl~vGGGI----r-~e~~~~~l~~Gad~V  158 (316)
                      .+..++.+.+.+.+...+.++|-++.-   .....+.+...      ....++.+|.++    . .+.++.++++|+|.|
T Consensus       168 ~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~~~~p~a~~d~~grL~v~aavG~~~d~~~~a~~l~~aG~d~I  247 (496)
T 4fxs_A          168 ATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKAESKPNACKDEQGRLRVGAAVGAAPGNEERVKALVEAGVDVL  247 (496)
T ss_dssp             ----CGGGTCC---CCCEEEECTTSBCCEEECCC-----CCCTTCCBCTTSCBCCEEECCSSSCCHHHHHHHHHTTCSEE
T ss_pred             CCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHhhcccchhhhcccceeeeeeeccccchHHHHHHHHhccCceE
Confidence            455667777777889999999876531   11122222211      112234443333    3 478999999999999


Q ss_pred             EeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEE------
Q 021156          159 IVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLV------  232 (316)
Q Consensus       159 Vigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilv------  232 (316)
                      +++++.-.. +...+.++++.+.|+ +..++.-++                    ...+.++.+.+.|++.+.+      
T Consensus       248 ~id~a~g~~-~~~~~~i~~ir~~~p-~~~Vi~g~v--------------------~t~e~a~~l~~aGaD~I~Vg~g~Gs  305 (496)
T 4fxs_A          248 LIDSSHGHS-EGVLQRIRETRAAYP-HLEIIGGNV--------------------ATAEGARALIEAGVSAVKVGIGPGS  305 (496)
T ss_dssp             EEECSCTTS-HHHHHHHHHHHHHCT-TCCEEEEEE--------------------CSHHHHHHHHHHTCSEEEECSSCCT
T ss_pred             Eeccccccc-hHHHHHHHHHHHHCC-CceEEEccc--------------------CcHHHHHHHHHhCCCEEEECCCCCc
Confidence            999875332 112478888888884 322222111                    1247789999999999876      


Q ss_pred             eecCCccccC-CCCHHHHHHHhhc---CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          233 HGVDVEGKKL-GIDDELVALLGKY---SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       233 tdi~~dG~~~-G~d~eli~~l~~~---~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      +..++..+.. .++++.+.++.+.   .++|||++|||++.+|+.+++.+|  +++|++|+++
T Consensus       306 ~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kala~G--Ad~V~iGs~f  366 (496)
T 4fxs_A          306 ICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAG--ASCVMVGSMF  366 (496)
T ss_dssp             TBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTT--CSEEEESTTT
T ss_pred             CcccccccCCCccHHHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHHHcC--CCeEEecHHH
Confidence            2222322233 4688888888763   479999999999999999999998  9999999998

>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A

Probab=98.93  E-value=1.3e-08  Score=97.37  Aligned_cols=170  Identities=18%  Similarity=0.148  Sum_probs=107.8

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHhC-CCcEEEecCCC---HHHHHHHHHcCCCEEEeCCeeecCCC
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAY-PGGLQVGGGIN---SDNSLSYIEEGATHVIVTSYVFNNGQ  169 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~-~~pl~vGGGIr---~e~~~~~l~~Gad~VVigt~~~~~~~  169 (316)
                      +| ++|...+++|-  +-++.-+-........++.+++. ..++-++-|.+   .+.++.++++|++.|+++++.-.. +
T Consensus        59 ~~-~lA~avA~aGG--lg~i~~~~s~e~~~~~i~~vk~~~~l~vga~vg~~~~~~~~~~~lieaGvd~I~idta~G~~-~  134 (366)
T 4fo4_A           59 EA-RLAIALAQEGG--IGFIHKNMSIEQQAAQVHQVKISGGLRVGAAVGAAPGNEERVKALVEAGVDVLLIDSSHGHS-E  134 (366)
T ss_dssp             SH-HHHHHHHHTTC--EEEECSSSCHHHHHHHHHHHHTTTSCCCEEECCSCTTCHHHHHHHHHTTCSEEEEECSCTTS-H
T ss_pred             hH-HHHHHHHHcCC--ceEeecCCCHHHHHHHHHHHHhcCceeEEEEeccChhHHHHHHHHHhCCCCEEEEeCCCCCC-H
Confidence            45 58888888763  22332221112222334444442 33444444443   377999999999999997754322 0


Q ss_pred             CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCC-------ccccC
Q 021156          170 MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDV-------EGKKL  242 (316)
Q Consensus       170 ~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~-------dG~~~  242 (316)
                      ...+.++++.+.++ +..++.-.+                    ...+.++.+.+.|++.+.+ .+..       ..+..
T Consensus       135 ~~~~~I~~ik~~~p-~v~Vi~G~v--------------------~t~e~A~~a~~aGAD~I~v-G~gpGs~~~tr~~~g~  192 (366)
T 4fo4_A          135 GVLQRIRETRAAYP-HLEIIGGNV--------------------ATAEGARALIEAGVSAVKV-GIGPGSICTTRIVTGV  192 (366)
T ss_dssp             HHHHHHHHHHHHCT-TCEEEEEEE--------------------CSHHHHHHHHHHTCSEEEE-CSSCSTTBCHHHHHCC
T ss_pred             HHHHHHHHHHHhcC-CCceEeeee--------------------CCHHHHHHHHHcCCCEEEE-ecCCCCCCCcccccCc
Confidence            01345667777773 322222122                    1247788999999999887 2211       11112


Q ss_pred             C-CCHHHHHHHhh---cCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          243 G-IDDELVALLGK---YSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       243 G-~d~eli~~l~~---~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      | ++++++.++++   .+++|||+.|||++.+|+.+++.+|  +++|++|+++
T Consensus       193 g~p~~~~l~~v~~~~~~~~iPVIA~GGI~~~~di~kala~G--Ad~V~vGs~f  243 (366)
T 4fo4_A          193 GVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAG--ASCVMVGSMF  243 (366)
T ss_dssp             CCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTT--CSEEEESTTT
T ss_pred             ccchHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcC--CCEEEEChHh
Confidence            3 46777777764   4689999999999999999999998  9999999998

>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A

Probab=98.93  E-value=2.2e-09  Score=98.00  Aligned_cols=173  Identities=14%  Similarity=0.060  Sum_probs=113.1

Q ss_pred             CHHHHHHHHHHcCCCcceEE-----EecCCc----ccHHHHHHHHH-hCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCC
Q 021156           94 SAAEFANLYKEDGLTGGHAI-----MLGADP----LSKAAAIEALH-AYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTS  162 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lv-----DLda~~----~~~~~i~~~v~-~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt  162 (316)
                      +| |.|+.++++|+..+-..     |.-...    -+.+.+++.++ .+.+|++-=-=|- ..+++.+-.+|+|.|  +.
T Consensus        20 ~~-eqa~iae~aGa~av~~l~~~p~d~r~~gGv~Rm~dp~~I~~I~~aVsIPVm~k~righ~~EAqilea~GaD~I--De   96 (291)
T 3o07_A           20 TP-EQAKIAEKSGACAVMALESIPADMRKSGKVCRMSDPKMIKDIMNSVSIPVMAKVRIGHFVEAQIIEALEVDYI--DE   96 (291)
T ss_dssp             SH-HHHHHHHHHTCSEEEECSSCHHHHHTTTCCCCCCCHHHHHHHHTTCSSCEEEEEETTCHHHHHHHHHTTCSEE--EE
T ss_pred             CH-HHHHHHHHhCchhhhhccCCCchhhhcCCccccCCHHHHHHHHHhCCCCeEEEEecCcHHHHHHHHHcCCCEE--ec
Confidence            45 59999999997754433     222111    23455555554 7899998766665 688999999999977  32


Q ss_pred             eeecCCCCCHHHHHHHHH-HhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEe--------
Q 021156          163 YVFNNGQMDLERLKDLVR-VVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVH--------  233 (316)
Q Consensus       163 ~~~~~~~~~~eli~ei~~-~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvt--------  233 (316)
                      +-...   ..+.+..+.+ .|+   +-+..|++                    .++.+.+..+.|++.|=.|        
T Consensus        97 sevlt---pad~~~~I~k~~f~---vpfv~~~~--------------------~l~EAlrri~eGA~mIrTtge~gtg~v  150 (291)
T 3o07_A           97 SEVLT---PADWTHHIEKDKFK---VPFVCGAK--------------------DLGEALRRINEGAAMIRTKGEAGTGDV  150 (291)
T ss_dssp             ETTSC---CSCSSCCCCGGGCS---SCEEEEES--------------------SHHHHHHHHHHTCSEEEECCCTTSCCT
T ss_pred             ccCCC---HHHHHHHhhhhcCC---CcEEeeCC--------------------CHHHHHHHHHCCCCEEEecCcCCCccH
Confidence            21111   1222222222 232   23445554                    1355666777888876543        


Q ss_pred             ------------------ec-CCc-c----ccCCCCHHHHHHHhhcCCCcE--EEEeCCCCHHHHHHHHHhCCCcCEEEE
Q 021156          234 ------------------GV-DVE-G----KKLGIDDELVALLGKYSPIPV--TYAGGVTTMADLEKIKVAGIGRVDVTV  287 (316)
Q Consensus       234 ------------------di-~~d-G----~~~G~d~eli~~l~~~~~iPV--IasGGI~s~eDi~~l~~~G~g~~gViv  287 (316)
                                        .. +.+ .    +..+.||++++++++.+++||  |++|||.|++|+.++++.|  +++|+|
T Consensus       151 ~~av~h~r~~~~~i~~l~g~~t~~el~~~a~~~~ad~elI~~Ike~~~IPVV~IAnGGI~TpedA~~~le~G--aDGVmV  228 (291)
T 3o07_A          151 SEAVKHIRRITEEIKACQQLKSEDDIAKVAEEMRVPVSLLKDVLEKGKLPVVNFAAGGVATPADAALLMQLG--CDGVFV  228 (291)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHTSCSSCEEBCSSCCSHHHHHHHHHTT--CSCEEE
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCHHHhhhcccccCCCHHHHHHHHHccCCCEEEecCCCCCCHHHHHHHHHhC--CCEEEE
Confidence                              12 221 1    124789999999998888998  5699999999999999988  999999


Q ss_pred             ccchhhccCc
Q 021156          288 GSALDIFGGN  297 (316)
Q Consensus       288 G~Al~~~~g~  297 (316)
                      |++++.-.++
T Consensus       229 GrAI~~s~DP  238 (291)
T 3o07_A          229 GSGIFKSSNP  238 (291)
T ss_dssp             CGGGGGSSCH
T ss_pred             chHHhCCCCH
Confidence            9999333333

>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...

Probab=98.92  E-value=3.3e-08  Score=90.62  Aligned_cols=171  Identities=11%  Similarity=0.035  Sum_probs=109.3

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCC-----cccH-----------------HHHHHHHH-h-CCCcEEEec--C-C-C--
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGAD-----PLSK-----------------AAAIEALH-A-YPGGLQVGG--G-I-N--  143 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~-----~~~~-----------------~~i~~~v~-~-~~~pl~vGG--G-I-r--  143 (316)
                      .-.+.++.+.+.|++.+|+ +.--.     .+..                 ..+++.++ . .++|+.+=+  . + +  
T Consensus        32 ~~~~~~~~l~~~GaD~iei-g~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pv~lm~y~n~v~~~g  110 (268)
T 1qop_A           32 QSLKIIDTLIDAGADALEL-GVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVFNNG  110 (268)
T ss_dssp             HHHHHHHHHHHTTCSSEEE-ECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHHHHTTC
T ss_pred             HHHHHHHHHHHCCCCEEEE-CCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEcccHHHHhh
Confidence            3457889999999999998 44111     1100                 13344444 4 578876522  1 1 1  


Q ss_pred             -HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH
Q 021156          144 -SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF  222 (316)
Q Consensus       144 -~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~  222 (316)
                       .+.++.+.++|+|.+++.....+.    .+.+.+..+++|-+.+ .-+.-                   .+..+.++.+
T Consensus       111 ~~~~~~~~~~aGadgii~~d~~~e~----~~~~~~~~~~~g~~~i-~l~~p-------------------~t~~~~i~~i  166 (268)
T 1qop_A          111 IDAFYARCEQVGVDSVLVADVPVEE----SAPFRQAALRHNIAPI-FICPP-------------------NADDDLLRQV  166 (268)
T ss_dssp             HHHHHHHHHHHTCCEEEETTCCGGG----CHHHHHHHHHTTCEEE-CEECT-------------------TCCHHHHHHH
T ss_pred             HHHHHHHHHHcCCCEEEEcCCCHHH----HHHHHHHHHHcCCcEE-EEECC-------------------CCCHHHHHHH
Confidence             245888999999988887666554    4445555566763222 11110                   0123455555


Q ss_pred             HHcCCCEEEEeecC-CccccCC---CCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          223 LASYADEFLVHGVD-VEGKKLG---IDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       223 ~~~Ga~~ilvtdi~-~dG~~~G---~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      .+...+.+.+..+. -.|...+   ...++++++++.+++||+++|||++.+++.+++..|  +++||||+|+
T Consensus       167 ~~~~~g~v~~~s~~G~tG~~~~~~~~~~~~i~~lr~~~~~pi~vggGI~t~e~~~~~~~ag--AD~vVVGSai  237 (268)
T 1qop_A          167 ASYGRGYTYLLSRSGVTGAENRGALPLHHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAG--AAGAISGSAI  237 (268)
T ss_dssp             HHHCCSCEEEESSSSCCCSSSCC--CCHHHHHHHHHTTCCCEEEESSCCSHHHHHHHHHTT--CSEEEECHHH
T ss_pred             HhhCCCcEEEEecCCcCCCccCCCchHHHHHHHHHhccCCcEEEECCCCCHHHHHHHHHcC--CCEEEEChHH
Confidence            56555544333332 2233222   247899999988899999999999999999988888  9999999999

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=98.92  E-value=2.2e-08  Score=99.04  Aligned_cols=175  Identities=14%  Similarity=0.116  Sum_probs=123.3

Q ss_pred             ccCHHHHHHHHHHcCCCcceEEEecCC---cccHHHHHHHHHh------CCCcEEEecCC----CH-HHHHHHHHcCCCE
Q 021156           92 DKSAAEFANLYKEDGLTGGHAIMLGAD---PLSKAAAIEALHA------YPGGLQVGGGI----NS-DNSLSYIEEGATH  157 (316)
Q Consensus        92 ~~~p~e~a~~~~~~G~~~l~lvDLda~---~~~~~~i~~~v~~------~~~pl~vGGGI----r~-e~~~~~l~~Gad~  157 (316)
                      +.++.++++.+.+.+...+.++|-++.   -.....+.+.+..      ...++.+|+++    +. +.++.+.++|+|.
T Consensus       169 ~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~~~~~~~d~~~~~~vg~~i~~~~~~~~~a~~l~~~G~d~  248 (491)
T 1zfj_A          169 GTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEFPHAAKDEFGRLLVAAAVGVTSDTFERAEALFEAGADA  248 (491)
T ss_dssp             TCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHCTTCCBCTTSCBCCEEEECSSTTHHHHHHHHHHHTCSE
T ss_pred             CCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHhccccccCcCCcEEEEEeccCchhHHHHHHHHHHcCCCe
Confidence            456788999999999999999997653   2345555555542      12456666665    33 8899999999999


Q ss_pred             EEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEe----
Q 021156          158 VIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVH----  233 (316)
Q Consensus       158 VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvt----  233 (316)
                      ++++++. .+....++.++++.+.++ ...++   ..      .+           ...+.++.+.+.|++.+.+-    
T Consensus       249 ivi~~a~-g~~~~~~~~i~~l~~~~p-~~pvi---~G------~v-----------~t~~~a~~~~~~Gad~I~vg~g~g  306 (491)
T 1zfj_A          249 IVIDTAH-GHSAGVLRKIAEIRAHFP-NRTLI---AG------NI-----------ATAEGARALYDAGVDVVKVGIGPG  306 (491)
T ss_dssp             EEECCSC-TTCHHHHHHHHHHHHHCS-SSCEE---EE------EE-----------CSHHHHHHHHHTTCSEEEECSSCC
T ss_pred             EEEeeec-CcchhHHHHHHHHHHHCC-CCcEe---CC------Cc-----------cCHHHHHHHHHcCCCEEEECccCC
Confidence            9999853 221112456777777763 22222   11      11           12377889999999998552    


Q ss_pred             ----ecCCccccCCCCHHHHHHHhh---cCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          234 ----GVDVEGKKLGIDDELVALLGK---YSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       234 ----di~~dG~~~G~d~eli~~l~~---~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                          .+..+| ..+++.+.++++..   ..++|||++|||++.+|+.+++.+|  +++|++|+++
T Consensus       307 ~~~~tr~~~~-~~~p~~~~l~~~~~~~~~~~ipvia~GGi~~~~di~kal~~G--A~~v~vG~~~  368 (491)
T 1zfj_A          307 SICTTRVVAG-VGVPQVTAIYDAAAVAREYGKTIIADGGIKYSGDIVKALAAG--GNAVMLGSMF  368 (491)
T ss_dssp             TTBCHHHHTC-CCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTT--CSEEEESTTT
T ss_pred             cceEEeeecC-CCCCcHHHHHHHHHHHhhcCCCEEeeCCCCCHHHHHHHHHcC--CcceeeCHHh
Confidence                122223 24678888888865   4689999999999999999999998  9999999999

>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A

Probab=98.91  E-value=1e-07  Score=85.11  Aligned_cols=182  Identities=19%  Similarity=0.166  Sum_probs=117.7

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCc-cc---HHHHHHHHHh-CCCcEEEecCCC-H-HHHHHHHHcCCCEEEeCCeeec
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADP-LS---KAAAIEALHA-YPGGLQVGGGIN-S-DNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~-~~---~~~i~~~v~~-~~~pl~vGGGIr-~-e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      +-.+.++...+.|++++|+...|+.. ++   .....+.+++ ++.|+.++==++ . +.++.++++|+|.|.+--....
T Consensus        20 ~l~~~i~~~~~~Gad~i~l~i~Dg~fv~~~~~~~~~~~~lr~~~~~~~~v~lmv~d~~~~i~~~~~agad~v~vH~~~~~   99 (228)
T 1h1y_A           20 NLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLRKHTKAYLDCHLMVTNPSDYVEPLAKAGASGFTFHIEVSR   99 (228)
T ss_dssp             GHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCBCHHHHHHHHTTCCSEEEEEEESSCGGGGHHHHHHHTCSEEEEEGGGCT
T ss_pred             HHHHHHHHHHHcCCCEEEEEEecCCcCcchhhCHHHHHHHHhhcCCcEEEEEEecCHHHHHHHHHHcCCCEEEECCCCcc
Confidence            45567777888899999999998752 22   1344444553 445555544444 3 4599999999999987655433


Q ss_pred             CCCCC-HHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHc--CCCEEEEeecCCccccCC
Q 021156          167 NGQMD-LERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLAS--YADEFLVHGVDVEGKKLG  243 (316)
Q Consensus       167 ~~~~~-~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~--Ga~~ilvtdi~~dG~~~G  243 (316)
                      .   . .+.++++ +..| -++.+++...                   ++.+..+.+.+.  +++.+++..+...++.+.
T Consensus       100 ~---~~~~~~~~i-~~~g-~~igv~~~p~-------------------t~~e~~~~~~~~~~~~d~vl~~sv~pg~~g~~  155 (228)
T 1h1y_A          100 D---NWQELIQSI-KAKG-MRPGVSLRPG-------------------TPVEEVFPLVEAENPVELVLVMTVEPGFGGQK  155 (228)
T ss_dssp             T---THHHHHHHH-HHTT-CEEEEEECTT-------------------SCGGGGHHHHHSSSCCSEEEEESSCTTCSSCC
T ss_pred             c---HHHHHHHHH-HHcC-CCEEEEEeCC-------------------CCHHHHHHHHhcCCCCCEEEEEeecCCCCccc
Confidence            2   2 2334444 3444 2344444211                   122445556665  899998877654433344


Q ss_pred             CCH---HHHHHHhhcC-CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156          244 IDD---ELVALLGKYS-PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVA  305 (316)
Q Consensus       244 ~d~---eli~~l~~~~-~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~  305 (316)
                      +++   +.++++++.. ++|+.+.|||+. +++.++.+.|  ++++++||++  +..+ ++++..+
T Consensus       156 ~~~~~l~~i~~~~~~~~~~pi~v~GGI~~-~ni~~~~~aG--aD~vvvGsai--~~~~-d~~~~~~  215 (228)
T 1h1y_A          156 FMPEMMEKVRALRKKYPSLDIEVDGGLGP-STIDVAASAG--ANCIVAGSSI--FGAA-EPGEVIS  215 (228)
T ss_dssp             CCGGGHHHHHHHHHHCTTSEEEEESSCST-TTHHHHHHHT--CCEEEESHHH--HTSS-CHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCCCEEEECCcCH-HHHHHHHHcC--CCEEEECHHH--HCCC-CHHHHHH
Confidence            454   4566666666 899999999998 8999999998  9999999999  7543 3444443

>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1

Probab=98.89  E-value=3.8e-09  Score=94.35  Aligned_cols=115  Identities=18%  Similarity=0.137  Sum_probs=90.9

Q ss_pred             CceEEEeeeeeecCCeeEEEeCCcce---ecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcE
Q 021156          184 KQRLVLDLSCRKKDGKYAIVTDRWQK---FSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPV  260 (316)
Q Consensus       184 ~~~IvvslD~k~~~g~~~v~~~gw~~---~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPV  260 (316)
                      ..+|+++||++  +|. ...++||..   ....++.+.++.+.+.|++.+.+++.+..+...+.+++.++++++.+++|+
T Consensus         4 ~~~iip~id~~--~g~-~~~v~g~~~~~~~~~~~~~~~a~~~~~~G~d~i~v~~~~~~~~~~~~~~~~i~~i~~~~~ipv   80 (253)
T 1h5y_A            4 ALRIIPCLDID--GGA-KVVVKGVNFQGIREVGDPVEMAVRYEEEGADEIAILDITAAPEGRATFIDSVKRVAEAVSIPV   80 (253)
T ss_dssp             BCEEEEEEEEC--GGG-CEECTTCCCHHHHEEECHHHHHHHHHHTTCSCEEEEECCCCTTTHHHHHHHHHHHHHHCSSCE
T ss_pred             ccEEEEEEEEc--CCc-eEEEEcccccceeecccHHHHHHHHHHcCCCEEEEEeCCccccCCcccHHHHHHHHHhcCCCE
Confidence            35899999998  661 123377642   122368899999999999999999887765444457889999998889999


Q ss_pred             EEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156          261 TYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVA  305 (316)
Q Consensus       261 IasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~  305 (316)
                      +++||+.+++++.++++.|  +++|++|+++  +.++..+.++.+
T Consensus        81 i~~g~i~~~~~~~~~~~~G--ad~V~i~~~~--~~~~~~~~~~~~  121 (253)
T 1h5y_A           81 LVGGGVRSLEDATTLFRAG--ADKVSVNTAA--VRNPQLVALLAR  121 (253)
T ss_dssp             EEESSCCSHHHHHHHHHHT--CSEEEESHHH--HHCTHHHHHHHH
T ss_pred             EEECCCCCHHHHHHHHHcC--CCEEEEChHH--hhCcHHHHHHHH
Confidence            9999999999999999998  9999999999  877654544433

>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...

Probab=98.89  E-value=5e-09  Score=100.38  Aligned_cols=162  Identities=17%  Similarity=0.134  Sum_probs=106.1

Q ss_pred             CCcEEEecCC----CHHHHH---HHHHcCCCEEEeCCeeecC-C--C-CCHHHHHHHHHHhcCc------eEEEeeeeee
Q 021156          133 PGGLQVGGGI----NSDNSL---SYIEEGATHVIVTSYVFNN-G--Q-MDLERLKDLVRVVGKQ------RLVLDLSCRK  195 (316)
Q Consensus       133 ~~pl~vGGGI----r~e~~~---~~l~~Gad~VVigt~~~~~-~--~-~~~eli~ei~~~~G~~------~IvvslD~k~  195 (316)
                      ++-+++||--    ..+|..   +.+..++|.+.|+...-+. |  . .+++.+.++.+..-..      ..-+.+-+|.
T Consensus       148 pv~vniggn~~t~~~~~dy~~~~~~~~~~ad~ielNisCPn~~G~~~l~~~~~l~~ll~av~~~~~~~~~~~~~Pv~vKi  227 (367)
T 3zwt_A          148 PLGVNLGKNKTSVDAAEDYAEGVRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVLVKI  227 (367)
T ss_dssp             CEEEEECCCTTCSCHHHHHHHHHHHHGGGCSEEEEECCCTTSTTGGGGGSHHHHHHHHHHHHHHHHTSCGGGCCEEEEEE
T ss_pred             eEEEEEecCCCCCcCHHHHHHHHHHHhhhCCEEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHhhccccCCceEEEEe
Confidence            3456776641    124422   2334568998886543221 1  0 1377777776654110      0112333331


Q ss_pred             cCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCC--c-----------cccCCC-----CHHHHHHHhhcC-
Q 021156          196 KDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDV--E-----------GKKLGI-----DDELVALLGKYS-  256 (316)
Q Consensus       196 ~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~--d-----------G~~~G~-----d~eli~~l~~~~-  256 (316)
                      .        -+|..   .+..++++.+++.|++.|++|....  .           |.++|+     .++.++++++.+ 
T Consensus       228 ~--------p~~~~---~~~~~ia~~~~~aGadgi~v~ntt~~r~~~~~~~~~~~~gGlSG~~i~p~a~~~v~~i~~~v~  296 (367)
T 3zwt_A          228 A--------PDLTS---QDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQ  296 (367)
T ss_dssp             C--------SCCCH---HHHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTT
T ss_pred             C--------CCCCH---HHHHHHHHHHHHcCCCEEEEeCCCcccccccccccccccCCcCCcccchhHHHHHHHHHHHcC
Confidence            1        12321   2467899999999999999886542  1           334454     357899999888 


Q ss_pred             -CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHH
Q 021156          257 -PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHA  308 (316)
Q Consensus       257 -~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~  308 (316)
                       ++|||++|||.|.+|+.+++..|  +++|++|+++ .|+|++.++++.+.+.
T Consensus       297 ~~ipvI~~GGI~s~~da~~~l~~G--Ad~V~vgra~-l~~gP~~~~~i~~~l~  346 (367)
T 3zwt_A          297 GRVPIIGVGGVSSGQDALEKIRAG--ASLVQLYTAL-TFWGPPVVGKVKRELE  346 (367)
T ss_dssp             TCSCEEEESSCCSHHHHHHHHHHT--CSEEEESHHH-HHHCTHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCHHHHHHHHHcC--CCEEEECHHH-HhcCcHHHHHHHHHHH
Confidence             89999999999999999999998  9999999997 3578988888876544

>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*

Probab=98.89  E-value=4.1e-08  Score=92.33  Aligned_cols=167  Identities=16%  Similarity=0.146  Sum_probs=114.0

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCCcccHHHH---HHHHH-hCCCcEEEecCCC-------H-HHHHHHHHcCCCEEEe
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGADPLSKAAA---IEALH-AYPGGLQVGGGIN-------S-DNSLSYIEEGATHVIV  160 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i---~~~v~-~~~~pl~vGGGIr-------~-e~~~~~l~~Gad~VVi  160 (316)
                      .+|. ++....++|..+  ++-... ......+   ++.++ ..+.|+.|+-.++       . +.++.+.+.|++.|.+
T Consensus        27 s~~~-la~av~~aGglG--~i~~~~-~~s~~~l~~~i~~i~~~~~~p~~v~l~v~~~~~~~~~~~~~~~~~~~g~d~V~~  102 (328)
T 2gjl_A           27 GRAE-MAAAVANAGGLA--TLSALT-QPSPEALAAEIARCRELTDRPFGVNLTLLPTQKPVPYAEYRAAIIEAGIRVVET  102 (328)
T ss_dssp             CSHH-HHHHHHHTTSBC--EEETTT-SSSHHHHHHHHHHHHHHCSSCCEEEEEECCCSSCCCHHHHHHHHHHTTCCEEEE
T ss_pred             CcHH-HHHHHHHCCCeE--EeCCCC-CCCHHHHHHHHHHHHHhcCCCeEEEEeccccccCccHHHHHHHHHhcCCCEEEE
Confidence            3564 788888888433  332211 1112222   23333 3556777776664       2 6688999999999987


Q ss_pred             CCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccc
Q 021156          161 TSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGK  240 (316)
Q Consensus       161 gt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~  240 (316)
                      +..   +   .++.++.+.+ .| -.++  .++.                    ..+.++.+.+.|++.++++.....|+
T Consensus       103 ~~g---~---p~~~~~~l~~-~g-i~vi--~~v~--------------------t~~~a~~~~~~GaD~i~v~g~~~GG~  152 (328)
T 2gjl_A          103 AGN---D---PGEHIAEFRR-HG-VKVI--HKCT--------------------AVRHALKAERLGVDAVSIDGFECAGH  152 (328)
T ss_dssp             EES---C---CHHHHHHHHH-TT-CEEE--EEES--------------------SHHHHHHHHHTTCSEEEEECTTCSBC
T ss_pred             cCC---C---cHHHHHHHHH-cC-CCEE--eeCC--------------------CHHHHHHHHHcCCCEEEEECCCCCcC
Confidence            632   2   1556655543 44 2333  2221                    13567788899999999888766544


Q ss_pred             c---CCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCc
Q 021156          241 K---LGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGN  297 (316)
Q Consensus       241 ~---~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~  297 (316)
                      .   ..+++++++++++.+++||+++|||++.+|+.+++..|  +++|++|+++  +..+
T Consensus       153 ~G~~~~~~~~~l~~v~~~~~iPviaaGGI~~~~~v~~al~~G--AdgV~vGs~~--~~~~  208 (328)
T 2gjl_A          153 PGEDDIPGLVLLPAAANRLRVPIIASGGFADGRGLVAALALG--ADAINMGTRF--LATR  208 (328)
T ss_dssp             CCSSCCCHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHT--CSEEEESHHH--HTSS
T ss_pred             CCCccccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcC--CCEEEECHHH--HcCc
Confidence            2   23689999999988899999999999999999999998  9999999999  7654

>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*

Probab=98.87  E-value=1.2e-08  Score=91.39  Aligned_cols=112  Identities=18%  Similarity=0.149  Sum_probs=87.9

Q ss_pred             eEEEeeeeeecCCeeEEEeCCcc-e---ecccCHHHHHHHHHHcCCCEEEEeecCCccccCC-CCHHHHHHHhhcCCCcE
Q 021156          186 RLVLDLSCRKKDGKYAIVTDRWQ-K---FSDVYLDERVLDFLASYADEFLVHGVDVEGKKLG-IDDELVALLGKYSPIPV  260 (316)
Q Consensus       186 ~IvvslD~k~~~g~~~v~~~gw~-~---~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G-~d~eli~~l~~~~~iPV  260 (316)
                      +|++++|++  +|+ .|+..++. +   ..+ ++.+.++.+.+.|++.+-+.+.+  +...+ +..+.++++++.+++|+
T Consensus         4 ~iip~id~~--~g~-~V~~~~g~~~~~~~~~-d~~~~a~~~~~~Gad~i~v~~~d--~~~~~~~~~~~i~~i~~~~~ipv   77 (244)
T 2y88_A            4 ILLPAVNVV--EGR-AVRLVQGKAGSQTEYG-SAVDAALGWQRDGAEWIHLVDLD--AAFGRGSNHELLAEVVGKLDVQV   77 (244)
T ss_dssp             EEEEEEEEE--TTE-EEEEETTEEEEEEEEE-EHHHHHHHHHHTTCSEEEEEEHH--HHTTSCCCHHHHHHHHHHCSSEE
T ss_pred             EEEEEEEeE--CCE-EEEeeccccccceecC-CHHHHHHHHHHcCCCEEEEEcCc--ccccCCChHHHHHHHHHhcCCcE
Confidence            689999998  886 77765532 1   224 79999999999999988766544  43322 22389999998899999


Q ss_pred             EEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHH
Q 021156          261 TYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWH  307 (316)
Q Consensus       261 IasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~  307 (316)
                      ++.|||.+++++..+++.|  +++|++|+++  ..++..+.++.+.+
T Consensus        78 ~v~ggi~~~~~~~~~l~~G--ad~V~lg~~~--l~~p~~~~~~~~~~  120 (244)
T 2y88_A           78 ELSGGIRDDESLAAALATG--CARVNVGTAA--LENPQWCARVIGEH  120 (244)
T ss_dssp             EEESSCCSHHHHHHHHHTT--CSEEEECHHH--HHCHHHHHHHHHHH
T ss_pred             EEECCCCCHHHHHHHHHcC--CCEEEECchH--hhChHHHHHHHHHc
Confidence            9999999999999999998  9999999999  77765555554433

>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*

Probab=98.86  E-value=1.3e-08  Score=94.83  Aligned_cols=156  Identities=15%  Similarity=0.056  Sum_probs=105.2

Q ss_pred             cEEEecCC-C-H-HHHHHHHHcCCC-EEEeCCe--eecCC-C--CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeC
Q 021156          135 GLQVGGGI-N-S-DNSLSYIEEGAT-HVIVTSY--VFNNG-Q--MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTD  205 (316)
Q Consensus       135 pl~vGGGI-r-~-e~~~~~l~~Gad-~VVigt~--~~~~~-~--~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~  205 (316)
                      -++++|-. . . +-++.+.++|+| .|.++-.  ..+.+ .  .+++.+.++.+.. ++.+-+.+-         +++.
T Consensus        97 ~~~i~g~~~~~~~~~a~~~~~~g~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~v-r~~~~~Pv~---------vKi~  166 (311)
T 1jub_A           97 FFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEV-FTFFTKPLG---------VKLP  166 (311)
T ss_dssp             EEEECCSSHHHHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHH-TTTCCSCEE---------EEEC
T ss_pred             EEEcCCCCHHHHHHHHHHHHhcCCCeEEEEeccCCCCCCcccccCCHHHHHHHHHHH-HHhcCCCEE---------EEEC
Confidence            34565533 2 2 446777789999 8888532  11100 1  1488888888877 333212222         2222


Q ss_pred             -CcceecccCHHHHHHHHHHcCCCEEEEeecC---------Cc----------cccCCC-----CHHHHHHHhhcC--CC
Q 021156          206 -RWQKFSDVYLDERVLDFLASYADEFLVHGVD---------VE----------GKKLGI-----DDELVALLGKYS--PI  258 (316)
Q Consensus       206 -gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~---------~d----------G~~~G~-----d~eli~~l~~~~--~i  258 (316)
                       +|..   .+..++++.+++.|++.+++|+..         +.          |.++|+     .++.++++++.+  ++
T Consensus       167 ~~~~~---~~~~~~a~~~~~~G~d~i~v~~~~~~g~~i~~~~~~~~~~~~~~~gG~sg~~~~~~~~~~i~~v~~~~~~~i  243 (311)
T 1jub_A          167 PYFDL---VHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEI  243 (311)
T ss_dssp             CCCSH---HHHHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHTTSCTTS
T ss_pred             CCCCH---HHHHHHHHHHHHcCCcEEEecCCCCcCceeccCCCCcccccCCCCCccccccccHHHHHHHHHHHHhcCCCC
Confidence             2321   135667999999999999887642         11          122243     378899999888  89


Q ss_pred             cEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhc-cCcccHHHHHHHH
Q 021156          259 PVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIF-GGNLAYKDVVAWH  307 (316)
Q Consensus       259 PVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~-~g~~~~~~~~~~~  307 (316)
                      |||++|||++.+|+.+++..|  +++|++|+++  + ++++.++++.+.+
T Consensus       244 pvi~~GGI~~~~da~~~l~~G--Ad~V~vg~~~--l~~~p~~~~~i~~~l  289 (311)
T 1jub_A          244 QIIGTGGIETGQDAFEHLLCG--ATMLQIGTAL--HKEGPAIFDRIIKEL  289 (311)
T ss_dssp             EEEEESSCCSHHHHHHHHHHT--CSEEEECHHH--HHHCTHHHHHHHHHH
T ss_pred             CEEEECCCCCHHHHHHHHHcC--CCEEEEchHH--HhcCcHHHHHHHHHH
Confidence            999999999999999999988  9999999999  7 4998887776643

>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A

Probab=98.85  E-value=8.6e-09  Score=92.58  Aligned_cols=109  Identities=21%  Similarity=0.184  Sum_probs=84.1

Q ss_pred             eEEEeeeeeecCCeeEEEeCCcc--e--ecccCHHHHHHHHHHcCCCEEEEeecCCcccc--CCCCHHHHHHHhhcCCCc
Q 021156          186 RLVLDLSCRKKDGKYAIVTDRWQ--K--FSDVYLDERVLDFLASYADEFLVHGVDVEGKK--LGIDDELVALLGKYSPIP  259 (316)
Q Consensus       186 ~IvvslD~k~~~g~~~v~~~gw~--~--~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~--~G~d~eli~~l~~~~~iP  259 (316)
                      +|++++|++  +|+ .|+..++.  +  ..+ ++.+.++.+++.|++.+-+.+.+  +..  ...+ +.++++++.+++|
T Consensus         5 ~iip~idl~--~g~-~V~~~~g~~~~~~~~~-d~~~~a~~~~~~Gad~i~v~~~d--~~~~~~~~~-~~i~~i~~~~~ip   77 (244)
T 1vzw_A            5 ELLPAVDVR--DGQ-AVRLVHGESGTETSYG-SPLEAALAWQRSGAEWLHLVDLD--AAFGTGDNR-ALIAEVAQAMDIK   77 (244)
T ss_dssp             EEEEEEEEE--TTE-EBC--------CCBCC-CHHHHHHHHHHTTCSEEEEEEHH--HHHTSCCCH-HHHHHHHHHCSSE
T ss_pred             EEEEEEEEE--CCE-EEEeeccccccceecC-CHHHHHHHHHHcCCCEEEEecCc--hhhcCCChH-HHHHHHHHhcCCc
Confidence            689999998  886 66655432  1  224 89999999999999988666544  443  3346 8899999989999


Q ss_pred             EEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156          260 VTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVA  305 (316)
Q Consensus       260 VIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~  305 (316)
                      +++.|||.+++++..+++.|  +++|++|+++  ..++..+.++.+
T Consensus        78 v~v~ggI~~~~~~~~~l~~G--ad~V~lg~~~--l~~p~~~~~~~~  119 (244)
T 1vzw_A           78 VELSGGIRDDDTLAAALATG--CTRVNLGTAA--LETPEWVAKVIA  119 (244)
T ss_dssp             EEEESSCCSHHHHHHHHHTT--CSEEEECHHH--HHCHHHHHHHHH
T ss_pred             EEEECCcCCHHHHHHHHHcC--CCEEEECchH--hhCHHHHHHHHH
Confidence            99999999999999999998  9999999998  777654555444

>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}

Probab=98.83  E-value=3.9e-08  Score=95.12  Aligned_cols=129  Identities=17%  Similarity=0.201  Sum_probs=90.7

Q ss_pred             EecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHH
Q 021156          138 VGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLD  216 (316)
Q Consensus       138 vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~  216 (316)
                      +.-|++ .+.++.++++|++.|+++++.-.. +-.++.++++.+.++ -.+++. .+                    ...
T Consensus       139 ~~v~~~~~e~~~~lveaGvdvIvldta~G~~-~~~~e~I~~ik~~~~-i~Vi~g-~V--------------------~t~  195 (400)
T 3ffs_A          139 AAIGVNEIERAKLLVEAGVDVIVLDSAHGHS-LNIIRTLKEIKSKMN-IDVIVG-NV--------------------VTE  195 (400)
T ss_dssp             EEECCC-CHHHHHHHHHTCSEEEECCSCCSB-HHHHHHHHHHHTTCC-CEEEEE-EE--------------------CSH
T ss_pred             eecCCCHHHHHHHHHHcCCCEEEEeCCCCCc-ccHHHHHHHHHhcCC-CeEEEe-ec--------------------CCH
Confidence            334455 488999999999999998775431 001356666666553 233221 11                    124


Q ss_pred             HHHHHHHHcCCCEEEEe------ecCCccccC-CCCHHHHHHHhhc---CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEE
Q 021156          217 ERVLDFLASYADEFLVH------GVDVEGKKL-GIDDELVALLGKY---SPIPVTYAGGVTTMADLEKIKVAGIGRVDVT  286 (316)
Q Consensus       217 e~a~~~~~~Ga~~ilvt------di~~dG~~~-G~d~eli~~l~~~---~~iPVIasGGI~s~eDi~~l~~~G~g~~gVi  286 (316)
                      +.++.+.+.|++.|.+.      ..+++.... .++++++.++++.   .++|||++|||.+.+|+.+++.+|  +++|+
T Consensus       196 e~A~~a~~aGAD~I~vG~g~Gs~~~tr~~~g~g~p~~~al~~v~~~~~~~~IPVIA~GGI~~~~di~kalalG--Ad~V~  273 (400)
T 3ffs_A          196 EATKELIENGADGIKVGIGPGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVG--ASSVM  273 (400)
T ss_dssp             HHHHHHHHTTCSEEEECC---------CCSCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTT--CSEEE
T ss_pred             HHHHHHHHcCCCEEEEeCCCCcCcccccccccchhHHHHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcC--CCEEE
Confidence            78899999999999872      112222222 4688888888653   589999999999999999999998  99999


Q ss_pred             Eccch
Q 021156          287 VGSAL  291 (316)
Q Consensus       287 vG~Al  291 (316)
                      +|+++
T Consensus       274 vGt~f  278 (400)
T 3ffs_A          274 IGSIL  278 (400)
T ss_dssp             ECGGG
T ss_pred             EChHH
Confidence            99988

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=98.83  E-value=1.3e-08  Score=100.96  Aligned_cols=173  Identities=17%  Similarity=0.177  Sum_probs=97.4

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCC---cccHHHHHHHHH-h-----CCCcEEEecCCC-----HHHHHHHHHcCCCEE
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGAD---PLSKAAAIEALH-A-----YPGGLQVGGGIN-----SDNSLSYIEEGATHV  158 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~---~~~~~~i~~~v~-~-----~~~pl~vGGGIr-----~e~~~~~l~~Gad~V  158 (316)
                      .+..++++.+.+.+...+.++|-++.   -.....+++.+. .     ...++++|+++.     .+.++.++++|++.+
T Consensus       174 ~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~~~~~~~D~~~~l~vga~ig~~~~~~~~a~~l~~aGvd~v  253 (494)
T 1vrd_A          174 ISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIEHPNAARDEKGRLLVGAAVGTSPETMERVEKLVKAGVDVI  253 (494)
T ss_dssp             -----------------------------------CHHHHTCTTCCBCTTSCBCCEEEECSSTTHHHHHHHHHHTTCSEE
T ss_pred             CCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhhhccccccccchhhhccccccCcCHhHHHHHHHHHHhCCCEE
Confidence            35567777888888999999996543   122233333332 1     234678888774     267999999999999


Q ss_pred             EeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecC--
Q 021156          159 IVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVD--  236 (316)
Q Consensus       159 Vigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~--  236 (316)
                      ++++..-. .+..++.++++.+.++.-.+++    .            |     ....+.++.+.+.|++.|.+ +..  
T Consensus       254 ~i~~~~G~-~~~~~e~i~~i~~~~p~~pvi~----g------------~-----~~t~e~a~~l~~~G~d~I~v-~~~~G  310 (494)
T 1vrd_A          254 VIDTAHGH-SRRVIETLEMIKADYPDLPVVA----G------------N-----VATPEGTEALIKAGADAVKV-GVGPG  310 (494)
T ss_dssp             EECCSCCS-SHHHHHHHHHHHHHCTTSCEEE----E------------E-----ECSHHHHHHHHHTTCSEEEE-CSSCS
T ss_pred             EEEecCCc-hHHHHHHHHHHHHHCCCceEEe----C------------C-----cCCHHHHHHHHHcCCCEEEE-cCCCC
Confidence            99775321 1112678888888874222221    1            1     01246678999999999887 221  


Q ss_pred             -------CccccCCCCHHHHHHHhhc---CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          237 -------VEGKKLGIDDELVALLGKY---SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       237 -------~dG~~~G~d~eli~~l~~~---~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                             .+|. .++.++.+..+.+.   .++|||++|||++.+|+.+++.+|  +++|++|+++
T Consensus       311 ~~~~~~~~~~~-g~p~~~~l~~v~~~~~~~~ipvia~GGI~~~~di~kala~G--Ad~V~iGr~~  372 (494)
T 1vrd_A          311 SICTTRVVAGV-GVPQLTAVMECSEVARKYDVPIIADGGIRYSGDIVKALAAG--AESVMVGSIF  372 (494)
T ss_dssp             TTCHHHHHHCC-CCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTT--CSEEEESHHH
T ss_pred             ccccccccCCC-CccHHHHHHHHHHHHhhcCCCEEEECCcCCHHHHHHHHHcC--CCEEEECHHH
Confidence                   1222 34677777666544   689999999999999999999998  9999999998

>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*

Probab=98.83  E-value=1e-07  Score=90.19  Aligned_cols=169  Identities=15%  Similarity=0.112  Sum_probs=108.6

Q ss_pred             HHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHhCCCcEEEecCCC--H-HHHHHHHHcC--CCEEEeCCeeecCCCC
Q 021156           96 AEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAYPGGLQVGGGIN--S-DNSLSYIEEG--ATHVIVTSYVFNNGQM  170 (316)
Q Consensus        96 ~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~~~pl~vGGGIr--~-e~~~~~l~~G--ad~VVigt~~~~~~~~  170 (316)
                      .++|+...+.|.-+++.-   .........++.++..+.|+.+.=|.+  . +.++.+.++|  ++.+.++... .++..
T Consensus        60 ~~la~a~~~~gg~g~~~~---~~~~~~~~~i~~~~~~g~~v~v~~g~~~~~~~~a~~~~~~g~~~~~i~i~~~~-G~~~~  135 (336)
T 1ypf_A           60 ERIATYLAENNYFYIMHR---FQPEKRISFIRDMQSRGLIASISVGVKEDEYEFVQQLAAEHLTPEYITIDIAH-GHSNA  135 (336)
T ss_dssp             HHHHHHHHHTTCCCCCCC---SSGGGHHHHHHHHHHTTCCCEEEECCSHHHHHHHHHHHHTTCCCSEEEEECSS-CCSHH
T ss_pred             HHHHHHHHhCCCEEEecC---CCCHHHHHHHHHHHhcCCeEEEeCCCCHHHHHHHHHHHhcCCCCCEEEEECCC-CCcHH
Confidence            457776666653333321   111223334444444455555554555  2 5578889999  9998876531 12112


Q ss_pred             CHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEE--eec-CCcc---ccCC-
Q 021156          171 DLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLV--HGV-DVEG---KKLG-  243 (316)
Q Consensus       171 ~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilv--tdi-~~dG---~~~G-  243 (316)
                      .++.++++.+.++ ..+++    +  +   .           +...+.++.+.+.|++.|++  |.- ..++   ...| 
T Consensus       136 ~~~~i~~lr~~~~-~~~vi----~--G---~-----------v~s~e~A~~a~~aGad~Ivvs~hgG~~~~~~~~~~~g~  194 (336)
T 1ypf_A          136 VINMIQHIKKHLP-ESFVI----A--G---N-----------VGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGT  194 (336)
T ss_dssp             HHHHHHHHHHHCT-TSEEE----E--E---E-----------ECSHHHHHHHHHHTCSEEEECSSCSTTCHHHHHHSCSS
T ss_pred             HHHHHHHHHHhCC-CCEEE----E--C---C-----------cCCHHHHHHHHHcCCCEEEEecCCCceeecccccCcCC
Confidence            3577888877773 23322    1  0   0           11247899999999999987  220 0010   1111 


Q ss_pred             C--CHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          244 I--DDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       244 ~--d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      +  .++.+.++++.+++|||++|||++.+|+.+++.+|  +++|++|+++
T Consensus       195 ~g~~~~~l~~v~~~~~ipVIa~GGI~~g~Dv~kalalG--AdaV~iGr~~  242 (336)
T 1ypf_A          195 GGWQLAALRWCAKAASKPIIADGGIRTNGDVAKSIRFG--ATMVMIGSLF  242 (336)
T ss_dssp             TTCHHHHHHHHHHTCSSCEEEESCCCSTHHHHHHHHTT--CSEEEESGGG
T ss_pred             chhHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcC--CCEEEeChhh
Confidence            2  68899999988899999999999999999999998  9999999999

>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A

Probab=98.82  E-value=1.5e-07  Score=85.50  Aligned_cols=178  Identities=12%  Similarity=0.089  Sum_probs=122.2

Q ss_pred             cCHHHHHHHHHHcCCCcceEE-EecCCcccHHHHHHHHHhCCCcEEEecCC-CHHHHHHHHHcCCCEEEeCCeeecCCCC
Q 021156           93 KSAAEFANLYKEDGLTGGHAI-MLGADPLSKAAAIEALHAYPGGLQVGGGI-NSDNSLSYIEEGATHVIVTSYVFNNGQM  170 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lv-DLda~~~~~~~i~~~v~~~~~pl~vGGGI-r~e~~~~~l~~Gad~VVigt~~~~~~~~  170 (316)
                      -+|.++|+.|.+. +..+-+. |=+--......+..+.+.+++|+.-=-=| ..-++..+..+|||.|.+..+.+.    
T Consensus        61 ~~~~~iA~~y~~~-A~~IsVlTd~~~F~gs~~dL~~ir~~v~lPvLrKDfi~~~~qi~ea~~~GAD~ilLi~a~l~----  135 (251)
T 1i4n_A           61 ASLEDFIRMYDEL-ADAISILTEKHYFKGDPAFVRAARNLTCRPILAKDFYIDTVQVKLASSVGADAILIIARILT----  135 (251)
T ss_dssp             CCHHHHHHHHHHH-CSEEEEECCCSSSCCCTHHHHHHHTTCCSCEEEECCCCSTHHHHHHHHTTCSEEEEEGGGSC----
T ss_pred             CCHHHHHHHHHHh-CCceEEEecccccCCCHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHcCCCEEEEecccCC----
Confidence            4899999999998 8766653 11100123333434434688998744333 346788899999999988877665    


Q ss_pred             CHHHHHHHHHH---hcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHc-CCCEEEEeecCCccccCCCCH
Q 021156          171 DLERLKDLVRV---VGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLAS-YADEFLVHGVDVEGKKLGIDD  246 (316)
Q Consensus       171 ~~eli~ei~~~---~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~-Ga~~ilvtdi~~dG~~~G~d~  246 (316)
                       .+.++++.+.   +|   .-+-+++.                    ..+.++++.+. |++.|-+|.++..+  .+.|+
T Consensus       136 -~~~l~~l~~~a~~lG---l~~lvEv~--------------------~~eE~~~A~~l~g~~iIGinnr~l~t--~~~d~  189 (251)
T 1i4n_A          136 -AEQIKEIYEAAEELG---MDSLVEVH--------------------SREDLEKVFSVIRPKIIGINTRDLDT--FEIKK  189 (251)
T ss_dssp             -HHHHHHHHHHHHTTT---CEEEEEEC--------------------SHHHHHHHHTTCCCSEEEEECBCTTT--CCBCT
T ss_pred             -HHHHHHHHHHHHHcC---CeEEEEeC--------------------CHHHHHHHHhcCCCCEEEEeCccccc--CCCCH
Confidence             3445555443   44   23334442                    13457788899 99988889876543  36788


Q ss_pred             HHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHH
Q 021156          247 ELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAW  306 (316)
Q Consensus       247 eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~  306 (316)
                      +...++.+..  ++++++.|||.+++|+.++.+.   +++|+||+++  ....-+-+.+.++
T Consensus       190 ~~~~~l~~~ip~~~~vIaEsGI~t~edv~~~~~~---a~avLVG~ai--mr~~d~~~~~~~l  246 (251)
T 1i4n_A          190 NVLWELLPLVPDDTVVVAESGIKDPRELKDLRGK---VNAVLVGTSI--MKAENPRRFLEEM  246 (251)
T ss_dssp             THHHHHGGGSCTTSEEEEESCCCCGGGHHHHTTT---CSEEEECHHH--HHCSSHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCEEEEeCCCCCHHHHHHHHHh---CCEEEEcHHH--cCCcCHHHHHHHH
Confidence            8888887765  5799999999999999999886   5899999999  7654333333333

>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*

Probab=98.81  E-value=1e-07  Score=89.80  Aligned_cols=165  Identities=19%  Similarity=0.137  Sum_probs=112.4

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCcccHHH---HHHHHH-hCCCcEEEecCC-C--H-HHHHHHHHcCCCEEEeCCeee
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADPLSKAA---AIEALH-AYPGGLQVGGGI-N--S-DNSLSYIEEGATHVIVTSYVF  165 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~---i~~~v~-~~~~pl~vGGGI-r--~-e~~~~~l~~Gad~VVigt~~~  165 (316)
                      +|. ++....++|..+  ++-...  .+.+.   .++.++ ..+.|+.|+=-+ +  . +.++.+.++|++.|.++... 
T Consensus        25 ~~~-la~av~~aG~lG--~i~~~~--~~~~~~~~~i~~i~~~~~~p~gvnl~~~~~~~~~~~~~a~~~g~d~V~~~~g~-   98 (332)
T 2z6i_A           25 DGD-LAGAVSKAGGLG--IIGGGN--APKEVVKANIDKIKSLTDKPFGVNIMLLSPFVEDIVDLVIEEGVKVVTTGAGN-   98 (332)
T ss_dssp             CHH-HHHHHHHHTSBE--EEECTT--CCHHHHHHHHHHHHHHCCSCEEEEECTTSTTHHHHHHHHHHTTCSEEEECSSC-
T ss_pred             cHH-HHHHHHhCCCcE--EeCCCC--CCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHHCCCCEEEECCCC-
Confidence            554 777788888532  332221  12222   233333 245677665444 2  3 55888999999999987641 


Q ss_pred             cCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccc-cCCC
Q 021156          166 NNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGK-KLGI  244 (316)
Q Consensus       166 ~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~-~~G~  244 (316)
                      .     ++.++.+.+ .| -.+++.+                      ...+.++.+.+.|++.++++.....|+ ...+
T Consensus        99 p-----~~~i~~l~~-~g-~~v~~~v----------------------~~~~~a~~~~~~GaD~i~v~g~~~GG~~g~~~  149 (332)
T 2z6i_A           99 P-----SKYMERFHE-AG-IIVIPVV----------------------PSVALAKRMEKIGADAVIAEGMEAGGHIGKLT  149 (332)
T ss_dssp             G-----GGTHHHHHH-TT-CEEEEEE----------------------SSHHHHHHHHHTTCSCEEEECTTSSEECCSSC
T ss_pred             h-----HHHHHHHHH-cC-CeEEEEe----------------------CCHHHHHHHHHcCCCEEEEECCCCCCCCCCcc
Confidence            1     445555543 43 2333222                      123568889999999999987754333 2346


Q ss_pred             CHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCc
Q 021156          245 DDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGN  297 (316)
Q Consensus       245 d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~  297 (316)
                      ++++++++++.+++||+++|||.+.+++.+++..|  +++|.+|+++  +..+
T Consensus       150 ~~~ll~~i~~~~~iPViaaGGI~~~~~~~~al~~G--AdgV~vGs~~--l~~~  198 (332)
T 2z6i_A          150 TMTLVRQVATAISIPVIAAGGIADGEGAAAGFMLG--AEAVQVGTRF--VVAK  198 (332)
T ss_dssp             HHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHTT--CSEEEECHHH--HTBT
T ss_pred             HHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcC--CCEEEecHHH--hcCc
Confidence            89999999988899999999999999999999998  9999999999  7655

>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*

Probab=98.80  E-value=1.2e-07  Score=83.86  Aligned_cols=159  Identities=18%  Similarity=0.114  Sum_probs=101.8

Q ss_pred             HHHHHHcCCCcceEEEecCCcccHHHHHHHHHhCCC---cEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHH
Q 021156           99 ANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAYPG---GLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERL  175 (316)
Q Consensus        99 a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~~~---pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli  175 (316)
                      +....+.|++.+|+=.-+........+.+.++....   ++.+.     ++++.+.++|+|.|-++.....     .+.+
T Consensus        35 ~~~~~~~G~~~v~lr~~~~~~~~~~~~~~~l~~~~~~~~~l~v~-----~~~~~a~~~gad~v~l~~~~~~-----~~~~  104 (221)
T 1yad_A           35 IIITIQNEVDFIHIRERSKSAADILKLLDLIFEGGIDKRKLVMN-----GRVDIALFSTIHRVQLPSGSFS-----PKQI  104 (221)
T ss_dssp             HHHHHGGGCSEEEECCTTSCHHHHHHHHHHHHHTTCCGGGEEEE-----SCHHHHHTTTCCEEEECTTSCC-----HHHH
T ss_pred             HHHHHHCCCCEEEEccCCCCHHHHHHHHHHHHHhcCcCCeEEEe-----ChHHHHHHcCCCEEEeCCCccC-----HHHH
Confidence            455556788877653222221222334444443322   34443     4678888999999988764322     4444


Q ss_pred             HHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCcccc---CCCCHHHHHHH
Q 021156          176 KDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKK---LGIDDELVALL  252 (316)
Q Consensus       176 ~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~---~G~d~eli~~l  252 (316)
                      +++   ++  .+.+.+.+.                   ++ +.++++.+.|++.+++..+-...+.   ...+++.++++
T Consensus       105 ~~~---~~--~~~ig~sv~-------------------t~-~~~~~a~~~gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~  159 (221)
T 1yad_A          105 RAR---FP--HLHIGRSVH-------------------SL-EEAVQAEKEDADYVLFGHVFETDCKKGLEGRGVSLLSDI  159 (221)
T ss_dssp             HHH---CT--TCEEEEEEC-------------------SH-HHHHHHHHTTCSEEEEECCC----------CHHHHHHHH
T ss_pred             HHH---CC--CCEEEEEcC-------------------CH-HHHHHHHhCCCCEEEECCccccCCCCCCCCCCHHHHHHH
Confidence            443   32  233445442                   12 4467788899999988554222222   23578999999


Q ss_pred             hhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCc
Q 021156          253 GKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGN  297 (316)
Q Consensus       253 ~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~  297 (316)
                      ++..++|+++.||| +.+++.++++.|  +++|.+|+++  +..+
T Consensus       160 ~~~~~~pvia~GGI-~~~nv~~~~~~G--a~gv~vgs~i--~~~~  199 (221)
T 1yad_A          160 KQRISIPVIAIGGM-TPDRLRDVKQAG--ADGIAVMSGI--FSSA  199 (221)
T ss_dssp             HHHCCSCEEEESSC-CGGGHHHHHHTT--CSEEEESHHH--HTSS
T ss_pred             HHhCCCCEEEECCC-CHHHHHHHHHcC--CCEEEEhHHh--hCCC
Confidence            88779999999999 999999999988  9999999999  7543

>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*

Probab=98.80  E-value=5.4e-08  Score=92.26  Aligned_cols=91  Identities=15%  Similarity=0.003  Sum_probs=75.9

Q ss_pred             CHHHHHHHHHHcCCCEEEEeecCCcc----ccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEcc
Q 021156          214 YLDERVLDFLASYADEFLVHGVDVEG----KKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGS  289 (316)
Q Consensus       214 ~~~e~a~~~~~~Ga~~ilvtdi~~dG----~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~  289 (316)
                      +..++++.+++.|++.+-+++-....    ...+.++++++++++.+++|||++|||.+.+++.++++.| +++.|++||
T Consensus       230 ~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~iPVi~~GgI~s~e~a~~~L~~G-~aD~V~iGR  308 (340)
T 3gr7_A          230 DYVPYAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQVPFAELIRREADIPTGAVGLITSGWQAEEILQNG-RADLVFLGR  308 (340)
T ss_dssp             GHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHTTCCEEEESSCCCHHHHHHHHHTT-SCSEEEECH
T ss_pred             HHHHHHHHHHHcCCCEEEEecCCccCCCCCCCccccHHHHHHHHHHcCCcEEeeCCCCCHHHHHHHHHCC-CeeEEEecH
Confidence            57899999999999988776422111    1245589999999998999999999999999999999998 589999999


Q ss_pred             chhhccCcccHHHHHHHH
Q 021156          290 ALDIFGGNLAYKDVVAWH  307 (316)
Q Consensus       290 Al~~~~g~~~~~~~~~~~  307 (316)
                      ++  +.+|..++++.+.+
T Consensus       309 ~~--lanPdl~~ki~~~l  324 (340)
T 3gr7_A          309 EL--LRNPYWPYAAAREL  324 (340)
T ss_dssp             HH--HHCTTHHHHHHHHT
T ss_pred             HH--HhCchHHHHHHHHC
Confidence            99  99998887776543

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=98.76  E-value=2.8e-08  Score=99.07  Aligned_cols=175  Identities=14%  Similarity=0.140  Sum_probs=115.5

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCc---ccHHHHHHHH------HhCCCcEEEecCC----CH-HHHHHHHHcCCCEEE
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADP---LSKAAAIEAL------HAYPGGLQVGGGI----NS-DNSLSYIEEGATHVI  159 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~---~~~~~i~~~v------~~~~~pl~vGGGI----r~-e~~~~~l~~Gad~VV  159 (316)
                      +..++.+.+.+.+...+.++|-++.-   .....+.+..      +..+.++.+|.++    +. +.++.+.++|++.|.
T Consensus       193 ~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~~~~~~~~~~~rl~vga~vG~~~~~~~~a~~~~~aG~d~v~  272 (514)
T 1jcn_A          193 TLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNRDYPLASKDSQKQLLCGAAVGTREDDKYRLDLLTQAGVDVIV  272 (514)
T ss_dssp             CSTTTTTHHHHHTCSCCCEESSSSCCC----CCCCSSCCCCTTCCBCTTSCBCCEEEECSSTTHHHHHHHHHHTTCSEEE
T ss_pred             CHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHHHHHHhhCcchhcccCCceeeeeEecCchhhHHHHHHHHHcCCCEEE
Confidence            44466677888889999999854320   0000000000      0012234444443    43 779999999999999


Q ss_pred             eCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCC--
Q 021156          160 VTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDV--  237 (316)
Q Consensus       160 igt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~--  237 (316)
                      +++..-. .+..++.++++.+.++ +..++.-++                    ...+.++.+.+.|++.+.+ ....  
T Consensus       273 i~~~~G~-~~~~~~~i~~i~~~~~-~~pvi~~~v--------------------~t~~~a~~l~~aGad~I~v-g~~~G~  329 (514)
T 1jcn_A          273 LDSSQGN-SVYQIAMVHYIKQKYP-HLQVIGGNV--------------------VTAAQAKNLIDAGVDGLRV-GMGCGS  329 (514)
T ss_dssp             ECCSCCC-SHHHHHHHHHHHHHCT-TCEEEEEEE--------------------CSHHHHHHHHHHTCSEEEE-CSSCSC
T ss_pred             eeccCCc-chhHHHHHHHHHHhCC-CCceEeccc--------------------chHHHHHHHHHcCCCEEEE-CCCCCc
Confidence            9776422 1112577888888873 333222122                    1246799999999999877 3211  


Q ss_pred             ---------ccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhcc
Q 021156          238 ---------EGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFG  295 (316)
Q Consensus       238 ---------dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~  295 (316)
                               .|..++..++.++++++.+++|||++|||++.+|+.+++.+|  +++|++|+++  ..
T Consensus       330 ~~~t~~~~~~g~~~~~~~~~~~~~~~~~~ipVia~GGI~~~~di~kala~G--Ad~V~iG~~~--l~  392 (514)
T 1jcn_A          330 ICITQEVMACGRPQGTAVYKVAEYARRFGVPIIADGGIQTVGHVVKALALG--ASTVMMGSLL--AA  392 (514)
T ss_dssp             CBTTBCCCSCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTT--CSEEEESTTT--TT
T ss_pred             ccccccccCCCccchhHHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHcC--CCeeeECHHH--Hc
Confidence                     111123357788888888899999999999999999999998  9999999998  54

>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}

Probab=98.75  E-value=1e-07  Score=87.46  Aligned_cols=171  Identities=10%  Similarity=0.070  Sum_probs=111.3

Q ss_pred             HHHHHHHHHHcCCCcceEE------EecCC--c----------ccH---HHHHHHHH-h-CCCcEEEecCCCH------H
Q 021156           95 AAEFANLYKEDGLTGGHAI------MLGAD--P----------LSK---AAAIEALH-A-YPGGLQVGGGINS------D  145 (316)
Q Consensus        95 p~e~a~~~~~~G~~~l~lv------DLda~--~----------~~~---~~i~~~v~-~-~~~pl~vGGGIr~------e  145 (316)
                      -.++++.+.+.|++.+++=      ..|+-  +          .+.   ..+++.++ . ..+|+.+=+=.+.      +
T Consensus        34 ~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~~~~~Pivlm~Y~npv~~~g~e  113 (267)
T 3vnd_A           34 SLKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQHPDMPIGLLLYANLVFANGID  113 (267)
T ss_dssp             HHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCEEEEECHHHHHHHCHH
T ss_pred             HHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHhhHH
Confidence            3577888888999988875      23321  0          011   23344444 3 6788776432231      3


Q ss_pred             H-HHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHH
Q 021156          146 N-SLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLA  224 (316)
Q Consensus       146 ~-~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~  224 (316)
                      . ++.+.++|+|.+++.....+.    .+.+.+..+++|-+.|.+.-+                    ....+.++.+.+
T Consensus       114 ~f~~~~~~aGvdgvii~Dlp~ee----~~~~~~~~~~~gl~~i~liaP--------------------~t~~eri~~i~~  169 (267)
T 3vnd_A          114 EFYTKAQAAGVDSVLIADVPVEE----SAPFSKAAKAHGIAPIFIAPP--------------------NADADTLKMVSE  169 (267)
T ss_dssp             HHHHHHHHHTCCEEEETTSCGGG----CHHHHHHHHHTTCEEECEECT--------------------TCCHHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEeCCCCHhh----HHHHHHHHHHcCCeEEEEECC--------------------CCCHHHHHHHHH
Confidence            3 788889999999998777665    566677777887332211111                    122467777777


Q ss_pred             cCCCEEEEeec-CCccccCCC--C-HHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          225 SYADEFLVHGV-DVEGKKLGI--D-DELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       225 ~Ga~~ilvtdi-~~dG~~~G~--d-~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      .+-+.+.+-++ .-.|..++.  + .++++++++.+++|++++|||++++++.+....|  +++||||+|+
T Consensus       170 ~~~gfvY~vS~~GvTG~~~~~~~~~~~~v~~vr~~~~~pv~vGfGI~~~e~~~~~~~~g--ADgvVVGSai  238 (267)
T 3vnd_A          170 QGEGYTYLLSRAGVTGTESKAGEPIENILTQLAEFNAPPPLLGFGIAEPEQVRAAIKAG--AAGAISGSAV  238 (267)
T ss_dssp             HCCSCEEESCCCCCC--------CHHHHHHHHHTTTCCCEEECSSCCSHHHHHHHHHTT--CSEEEECHHH
T ss_pred             hCCCcEEEEecCCCCCCccCCcHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcC--CCEEEECHHH
Confidence            76555544222 223444433  2 4689999988899999999999999999888888  9999999999

>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii}

Probab=98.74  E-value=9.4e-09  Score=96.21  Aligned_cols=47  Identities=36%  Similarity=0.408  Sum_probs=42.5

Q ss_pred             CHHHHHHHhhcCCCcE--EEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhcc
Q 021156          245 DDELVALLGKYSPIPV--TYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFG  295 (316)
Q Consensus       245 d~eli~~l~~~~~iPV--IasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~  295 (316)
                      .+++++++.+..++||  ++.|||.+++|+.++++.|  +++|+||+++  +.
T Consensus       228 ~lell~~i~~~~~IPVV~VAeGGI~Tpeda~~~l~~G--aDgV~VGsaI--~~  276 (330)
T 2yzr_A          228 LYEVLLEVKKLGRLPVVNFAAGGVATPADAALMMQLG--SDGVFVGSGI--FK  276 (330)
T ss_dssp             HHHHHHHHHHHTSCSSEEEECSCCCSHHHHHHHHHTT--CSCEEESHHH--HT
T ss_pred             hHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHcC--cCEEeeHHHH--hc
Confidence            3489999988778999  6999999999999999998  9999999999  73

>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*

Probab=98.73  E-value=6.8e-08  Score=91.38  Aligned_cols=90  Identities=10%  Similarity=-0.047  Sum_probs=75.3

Q ss_pred             CHHHHHHHHHHcCCCEEEEeecCCccc----cCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEcc
Q 021156          214 YLDERVLDFLASYADEFLVHGVDVEGK----KLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGS  289 (316)
Q Consensus       214 ~~~e~a~~~~~~Ga~~ilvtdi~~dG~----~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~  289 (316)
                      +..++++.+++.|++.+-++..+.+..    ..+.+++.++++++.+++||+++|||.+.+++.++++.| +++.|++||
T Consensus       230 ~~~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~s~~~a~~~l~~G-~aD~V~iGR  308 (338)
T 1z41_A          230 DHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQADMATGAVGMITDGSMAEEILQNG-RADLIFIGR  308 (338)
T ss_dssp             HHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCSHHHHHHHHHTT-SCSEEEECH
T ss_pred             HHHHHHHHHHHcCCCEEEEecCccccCCCCCCccchHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHcC-CceEEeecH
Confidence            467899999999999988877543322    123478999999988899999999999999999999998 599999999


Q ss_pred             chhhccCcccHHHHHHH
Q 021156          290 ALDIFGGNLAYKDVVAW  306 (316)
Q Consensus       290 Al~~~~g~~~~~~~~~~  306 (316)
                      ++  +.++..++++.+-
T Consensus       309 ~~--i~nPdl~~ki~~~  323 (338)
T 1z41_A          309 EL--LRDPFFARTAAKQ  323 (338)
T ss_dssp             HH--HHCTTHHHHHHHH
T ss_pred             HH--HhCchHHHHHHcC
Confidence            99  9999887777543

>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}

Probab=98.72  E-value=5.2e-08  Score=92.57  Aligned_cols=158  Identities=16%  Similarity=0.031  Sum_probs=104.5

Q ss_pred             CCCc--EEEecCCCHHH----HHHHHHcCCC-EEEeCCeeecC-C--C--CCHHHHHHHHHHhcCceEEEeeeeeecCCe
Q 021156          132 YPGG--LQVGGGINSDN----SLSYIEEGAT-HVIVTSYVFNN-G--Q--MDLERLKDLVRVVGKQRLVLDLSCRKKDGK  199 (316)
Q Consensus       132 ~~~p--l~vGGGIr~e~----~~~~l~~Gad-~VVigt~~~~~-~--~--~~~eli~ei~~~~G~~~IvvslD~k~~~g~  199 (316)
                      .+.|  ++++| -..++    ++.+-++|++ .+.|+...-+. |  .  .+|+.+.++.+.. ++.+-+.+-+|     
T Consensus       127 ~~~pvivsI~g-~~~~d~~~~a~~l~~~g~~d~ielNisCPn~~G~~~l~~~~e~l~~il~av-~~~~~~PV~vK-----  199 (345)
T 3oix_A          127 DSKNHFLSLVG-MSPEETHTILXMVEASKYQGLVELNLSCPNVPGXPQIAYDFETTDQILSEV-FTYFTKPLGIK-----  199 (345)
T ss_dssp             TCCCCEEEECC-SSHHHHHHHHHHHHHSSCCSEEEEECSCCCSTTCCCGGGCHHHHHHHHHHH-TTTCCSCEEEE-----
T ss_pred             CCCCEEEEecC-CCHHHHHHHHHHHhccCCCcEEEEecCCCCcCCchhhcCCHHHHHHHHHHH-HHHhCCCeEEE-----
Confidence            3445  45654 44333    4444457877 77776432111 1  1  1589999999888 34332334333     


Q ss_pred             eEEEeCCcceecccCHHHHHHHHHHcCCCEEEE---e-------ecCC----------ccccCCC-C----HHHHHHHhh
Q 021156          200 YAIVTDRWQKFSDVYLDERVLDFLASYADEFLV---H-------GVDV----------EGKKLGI-D----DELVALLGK  254 (316)
Q Consensus       200 ~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilv---t-------di~~----------dG~~~G~-d----~eli~~l~~  254 (316)
                          +.-     +.+..++++.++..|++.+.+   +       ++++          -|.++|+ .    ++.++++++
T Consensus       200 ----i~p-----~~~~~~~a~~~~~aga~~i~~int~nt~g~~~~i~~~~~~~~~~~~~gGlSG~ai~p~a~~~v~~i~~  270 (345)
T 3oix_A          200 ----LPP-----YFDIVHFDQAAAIFNXYPLTFVNCINSIGNGLVIEDETVVIXPKNGFGGIGGDYVKPTALANVHAFYK  270 (345)
T ss_dssp             ----ECC-----CCCHHHHHHHHHHHTTSCCSEEEECCCEEEEECEETTEESCSGGGGEEEEEEGGGHHHHHHHHHHHHT
T ss_pred             ----ECC-----CCCHHHHHHHHHHhCCCceEEEEeecccccceeeccCccccccccccCCcCCccccHHHHHHHHHHHH
Confidence                221     135778888888888765421   1       1221          1234555 3    678999998


Q ss_pred             cC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccc-hhhccCcccHHHHHHHHHh
Q 021156          255 YS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSA-LDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       255 ~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~A-l~~~~g~~~~~~~~~~~~~  309 (316)
                      .+  ++|||++|||.|.+|+.+++..|  +++|+||++ +  |.|++.++++.+.+..
T Consensus       271 ~~~~~ipIIg~GGI~s~~da~~~l~aG--Ad~V~igra~~--~~gP~~~~~i~~~L~~  324 (345)
T 3oix_A          271 RLNPSIQIIGTGGVXTGRDAFEHILCG--ASMVQIGTALH--QEGPQIFKRITKELXA  324 (345)
T ss_dssp             TSCTTSEEEEESSCCSHHHHHHHHHHT--CSEEEESHHHH--HHCTHHHHHHHHHHHH
T ss_pred             HcCCCCcEEEECCCCChHHHHHHHHhC--CCEEEEChHHH--hcChHHHHHHHHHHHH
Confidence            87  79999999999999999999998  999999999 7  9999988888775443

>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*

Probab=98.71  E-value=1.2e-07  Score=90.80  Aligned_cols=148  Identities=13%  Similarity=0.026  Sum_probs=100.8

Q ss_pred             HHHHHHHcCCCEEEeCCee--------------ecC---------CCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEE
Q 021156          146 NSLSYIEEGATHVIVTSYV--------------FNN---------GQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAI  202 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~~--------------~~~---------~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v  202 (316)
                      .++++.++|+|-|=|....              +.|         .++..|.++.+.+.+|++.|.+-+...   +.+.=
T Consensus       166 aA~~a~~aGfDgVeih~a~gYLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~pv~vris~~---~~~~~  242 (365)
T 2gou_A          166 AALNAMEAGFDGIELHAANGYLINQFIDSEANNRSDEYGGSLENRLRFLDEVVAALVDAIGAERVGVRLAPL---TTLNG  242 (365)
T ss_dssp             HHHHHHHTTCSEEEEECCTTSHHHHHHSGGGCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECSS---CCTTS
T ss_pred             HHHHHHHcCCCEEEEecccchhHhhccCCCccCcCcccCcchhhhHHHHHHHHHHHHHHcCCCcEEEEEccc---cccCC
Confidence            3566678999999885421              111         112346677777778755443322221   00000


Q ss_pred             EeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCc
Q 021156          203 VTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGR  282 (316)
Q Consensus       203 ~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~  282 (316)
                      ...+|.   ..+..++++.+++.|++.+-++....++. .+.++++++++++.+++|||++||| +.+++.++++.| ++
T Consensus       243 ~~~~~~---~~~~~~~a~~l~~~G~d~i~v~~~~~~~~-~~~~~~~~~~i~~~~~iPvi~~Ggi-~~~~a~~~l~~g-~a  316 (365)
T 2gou_A          243 TVDADP---ILTYTAAAALLNKHRIVYLHIAEVDWDDA-PDTPVSFKRALREAYQGVLIYAGRY-NAEKAEQAINDG-LA  316 (365)
T ss_dssp             CCCSSH---HHHHHHHHHHHHHTTCSEEEEECCBTTBC-CCCCHHHHHHHHHHCCSEEEEESSC-CHHHHHHHHHTT-SC
T ss_pred             CCCCCC---HHHHHHHHHHHHHcCCCEEEEeCCCcCCC-CCccHHHHHHHHHHCCCcEEEeCCC-CHHHHHHHHHCC-Cc
Confidence            001111   11356789999999999988877543332 2346889999999999999999999 999999999998 59


Q ss_pred             CEEEEccchhhccCcccHHHHH
Q 021156          283 VDVTVGSALDIFGGNLAYKDVV  304 (316)
Q Consensus       283 ~gVivG~Al~~~~g~~~~~~~~  304 (316)
                      +.|++||++  +.++..++++.
T Consensus       317 D~V~igR~~--i~~P~l~~~~~  336 (365)
T 2gou_A          317 DMIGFGRPF--IANPDLPERLR  336 (365)
T ss_dssp             SEEECCHHH--HHCTTHHHHHH
T ss_pred             ceehhcHHH--HhCchHHHHHH
Confidence            999999999  99998777765

>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A

Probab=98.71  E-value=4.5e-07  Score=82.46  Aligned_cols=172  Identities=16%  Similarity=0.152  Sum_probs=107.3

Q ss_pred             CHHHHHHHHHHcCCCcceEEE------ecCC------------cccHH---HHHHHHH-hCCCcEEEecCCCH---HHHH
Q 021156           94 SAAEFANLYKEDGLTGGHAIM------LGAD------------PLSKA---AAIEALH-AYPGGLQVGGGINS---DNSL  148 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvD------Lda~------------~~~~~---~i~~~v~-~~~~pl~vGGGIr~---e~~~  148 (316)
                      +-.+.++.+.+.|++.+++=.      .|+.            ..+..   .+++.++ .+++|+.+=.=.+.   ..++
T Consensus        33 ~~~~~~~~l~~~Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~~i~~ir~~~~~Pv~~m~~~~~~~~~~~~  112 (262)
T 1rd5_A           33 TTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCPVVLLSYYKPIMFRSLA  112 (262)
T ss_dssp             HHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGCSSCEEEECCSHHHHSCCTH
T ss_pred             HHHHHHHHHHHcCCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEEEEecCcHHHHHHHH
Confidence            345788888899999998821      1110            01112   2344444 46789876421221   1355


Q ss_pred             HHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCC
Q 021156          149 SYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYAD  228 (316)
Q Consensus       149 ~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~  228 (316)
                      .+.++||+.+++.......    .+.+.+..+++|-+ .++.+..                   .+..+.++.+...+.+
T Consensus       113 ~a~~aGadgv~v~d~~~~~----~~~~~~~~~~~g~~-~i~~~a~-------------------~t~~e~~~~~~~~~~g  168 (262)
T 1rd5_A          113 KMKEAGVHGLIVPDLPYVA----AHSLWSEAKNNNLE-LVLLTTP-------------------AIPEDRMKEITKASEG  168 (262)
T ss_dssp             HHHHTTCCEEECTTCBTTT----HHHHHHHHHHTTCE-ECEEECT-------------------TSCHHHHHHHHHHCCS
T ss_pred             HHHHcCCCEEEEcCCChhh----HHHHHHHHHHcCCc-eEEEECC-------------------CCCHHHHHHHHhcCCC
Confidence            6899999999987655443    44444444556522 1121211                   1224555666666665


Q ss_pred             EEEEeec-CCccccCCC---CHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          229 EFLVHGV-DVEGKKLGI---DDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       229 ~ilvtdi-~~dG~~~G~---d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      .+.+..+ .-.|+..+.   ..++++++++.+++||++.|||++.+++.++.+.|  +++|+||+|+
T Consensus       169 ~v~~~s~~G~tG~~~~~~~~~~~~i~~v~~~~~~pI~vgGGI~~~e~~~~~~~~G--AdgvvVGSai  233 (262)
T 1rd5_A          169 FVYLVSVNGVTGPRANVNPRVESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWG--ADGVIIGSAM  233 (262)
T ss_dssp             CEEEECSSCCBCTTSCBCTHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTT--CSEEEECHHH
T ss_pred             eEEEecCCCCCCCCcCCCchHHHHHHHHHhhcCCeEEEECCcCCHHHHHHHHHcC--CCEEEEChHH
Confidence            5544333 113443343   34588888888899999999999999999999998  9999999999

>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1

Probab=98.71  E-value=2e-07  Score=84.26  Aligned_cols=178  Identities=14%  Similarity=0.182  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHcCCCcceEEEecCCc-c---cHHHHHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCC
Q 021156           95 AAEFANLYKEDGLTGGHAIMLGADP-L---SKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQM  170 (316)
Q Consensus        95 p~e~a~~~~~~G~~~l~lvDLda~~-~---~~~~i~~~v~~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~  170 (316)
                      ..++++.+.+.|++   ++-|.+.. .   +...+.+.+++.++|+.+=++..     +.+.+|+|-+++=+.....   
T Consensus        22 t~~~~~~l~~~GaD---~ielG~S~Gvt~~~~~~~v~~ir~~~~Pivlm~y~~-----n~i~~G~dg~iiPdLp~ee---   90 (240)
T 1viz_A           22 PDEQLEILCESGTD---AVIIGGSDGVTEDNVLRMMSKVRRFLVPCVLEVSAI-----EAIVPGFDLYFIPSVLNSK---   90 (240)
T ss_dssp             CHHHHHHHHTSCCS---EEEECC----CHHHHHHHHHHHTTSSSCEEEECSCG-----GGCCSCCSEEEEEEETTBS---
T ss_pred             cHHHHHHHHHcCCC---EEEECCCCCCCHHHHHHHHHHhhCcCCCEEEecCcc-----ccccCCCCEEEEcccCccc---
Confidence            35678888888987   44444321 1   23344555555789999877773     1117899999987776653   


Q ss_pred             CHHHH----HHHHHHhc-----CceEEEeeeeeecCCeeEEEeCCcc------eecccCHHHHHHHHHHcCC---CEEEE
Q 021156          171 DLERL----KDLVRVVG-----KQRLVLDLSCRKKDGKYAIVTDRWQ------KFSDVYLDERVLDFLASYA---DEFLV  232 (316)
Q Consensus       171 ~~eli----~ei~~~~G-----~~~IvvslD~k~~~g~~~v~~~gw~------~~~~~~~~e~a~~~~~~Ga---~~ilv  232 (316)
                      +++++    .+..+++|     -+.| +       +| |.+......      .....++ +.++.+.+.|.   ..++|
T Consensus        91 ~~~~~~g~~~~a~~~~g~~~~~l~~i-~-------~g-y~l~~P~~~~~rl~~~d~~~~~-~~~~~~a~~g~~~~~~~VY  160 (240)
T 1viz_A           91 NADWIVGMHQKAMKEYGELMSMEEIV-A-------EG-YCIANPDCKAAALTEADADLNM-DDIVAYARVSELLQLPIFY  160 (240)
T ss_dssp             SGGGTTHHHHHHHHHCHHHHHHSCEE-E-------EE-EEECCTTSHHHHHTTBCCCCCH-HHHHHHHHHHHHTTCSEEE
T ss_pred             ChhhhcchhHHHHHHcCCCCcceeee-e-------cc-cEEECCCCceEEeeccCCCCCH-HHHHHHHHhCcccCCCEEE
Confidence            25553    45567775     3322 2       01 111111111      0000123 36666666553   13445


Q ss_pred             eecCCccccCCCCHHHHHHHhhcC-CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcc-cHHH
Q 021156          233 HGVDVEGKKLGIDDELVALLGKYS-PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNL-AYKD  302 (316)
Q Consensus       233 tdi~~dG~~~G~d~eli~~l~~~~-~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~-~~~~  302 (316)
                      .+-  .|+  +.+.++++++++.+ ++|++++|||+++++++++++ |  +++|+||+|+  ++.+- .+++
T Consensus       161 l~s--~G~--~~~~~~i~~i~~~~~~~Pv~vGgGI~t~e~a~~~~~-g--Ad~VIVGSa~--v~~~~~~~~~  223 (240)
T 1viz_A          161 LEY--SGV--LGDIEAVKKTKAVLETSTLFYGGGIKDAETAKQYAE-H--ADVIVVGNAV--YEDFDRALKT  223 (240)
T ss_dssp             EEC--TTS--CCCHHHHHHHHHTCSSSEEEEESSCCSHHHHHHHHT-T--CSEEEECTHH--HHCHHHHHTH
T ss_pred             EeC--CCc--cChHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHh-C--CCEEEEChHH--HhCHHHHHHH
Confidence            543  354  67999999999988 999999999999999999998 8  9999999999  87653 3444

>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...

Probab=98.70  E-value=1.5e-07  Score=89.93  Aligned_cols=145  Identities=12%  Similarity=0.031  Sum_probs=100.9

Q ss_pred             HHHHHHHHcCCCEEEeCCee--------------ecC---------CCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeE
Q 021156          145 DNSLSYIEEGATHVIVTSYV--------------FNN---------GQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYA  201 (316)
Q Consensus       145 e~~~~~l~~Gad~VVigt~~--------------~~~---------~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~  201 (316)
                      +.++++.++|+|-|=|...-              +.|         .++..|.++.+.+.+|++.|.+-+...       
T Consensus       165 ~aA~~a~~aGfDgVeih~a~GyLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~~v~vrls~~-------  237 (364)
T 1vyr_A          165 QAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPI-------  237 (364)
T ss_dssp             HHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCS-------
T ss_pred             HHHHHHHHcCCCEEEEcCccchHHHhccCCcccccCCcCCcchhcChhhHHHHHHHHHHhcCCCcEEEEEccc-------
Confidence            34666788999998884321              111         122346677777778755444433221       


Q ss_pred             EEeCCcce-----ecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHH
Q 021156          202 IVTDRWQK-----FSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIK  276 (316)
Q Consensus       202 v~~~gw~~-----~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~  276 (316)
                         ..|..     .+..+..++++.+++.|++.+-++.....+. ...+++.++++++.+++||+++||+ +.+++.+++
T Consensus       238 ---~~~~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~-~~~~~~~~~~v~~~~~iPvi~~Ggi-t~~~a~~~l  312 (364)
T 1vyr_A          238 ---GTFQNVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGG-KPYSEAFRQKVRERFHGVIIGAGAY-TAEKAEDLI  312 (364)
T ss_dssp             ---SCBTTBCCCTTHHHHHHHHHHHHHHTTCSEEEEECCBTTBC-CCCCHHHHHHHHHHCCSEEEEESSC-CHHHHHHHH
T ss_pred             ---cccccccCCCCCHHHHHHHHHHHHHhCCCEEEEecCcccCC-CcccHHHHHHHHHHCCCCEEEECCc-CHHHHHHHH
Confidence               01210     0111356689999999999887776433322 2347889999999999999999999 899999999


Q ss_pred             HhCCCcCEEEEccchhhccCcccHHHHH
Q 021156          277 VAGIGRVDVTVGSALDIFGGNLAYKDVV  304 (316)
Q Consensus       277 ~~G~g~~gVivG~Al~~~~g~~~~~~~~  304 (316)
                      +.| +++.|++||++  +.++..++++.
T Consensus       313 ~~g-~aD~V~~gR~~--l~~P~~~~~~~  337 (364)
T 1vyr_A          313 GKG-LIDAVAFGRDY--IANPDLVARLQ  337 (364)
T ss_dssp             HTT-SCSEEEESHHH--HHCTTHHHHHH
T ss_pred             HCC-CccEEEECHHH--HhChhHHHHHH
Confidence            998 59999999999  99998877765

>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2

Probab=98.70  E-value=4.3e-07  Score=80.80  Aligned_cols=183  Identities=17%  Similarity=0.139  Sum_probs=114.6

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCc-cc---HHHHHHHHH-hCCCcEEEecCCC-H-HHHHHHHHcCCCEEEeCCe--e
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADP-LS---KAAAIEALH-AYPGGLQVGGGIN-S-DNSLSYIEEGATHVIVTSY--V  164 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~-~~---~~~i~~~v~-~~~~pl~vGGGIr-~-e~~~~~l~~Gad~VVigt~--~  164 (316)
                      +..+.++...+.|++.+|+-..|+.. ++   ...+.+.++ .++.|+.++-=++ . +.++.+.++|||.|.+...  .
T Consensus        24 ~~~~~i~~~~~~G~d~i~l~~~dg~f~~~~~~~~~~i~~l~~~~~~~~~v~l~vnd~~~~v~~~~~~Gad~v~vh~~~~~  103 (230)
T 1rpx_A           24 KLGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSS  103 (230)
T ss_dssp             GHHHHHHHHHHTTCCCEEEEEEBSSSSSCBCCCHHHHHHHGGGCCSCEEEEEESSSHHHHHHHHHHTTCSEEEEECSTTT
T ss_pred             HHHHHHHHHHHCCCCEEEEeeccCCcccccccCHHHHHHHHhccCCcEEEEEEecCHHHHHHHHHHcCCCEEEEEecCcc
Confidence            45577888888899999998777642 11   134445555 3567888888787 4 4699999999999988765  3


Q ss_pred             ecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCC
Q 021156          165 FNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGI  244 (316)
Q Consensus       165 ~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~  244 (316)
                      ...   ..+.++.+ +..| -++.+++-.    +            +   ..+.++.+ ..+++.+++..+..-++.+.+
T Consensus       104 ~~~---~~~~~~~~-~~~g-~~ig~~~~p----~------------t---~~e~~~~~-~~~~d~vl~~~~~pg~~g~~~  158 (230)
T 1rpx_A          104 TIH---LHRTINQI-KSLG-AKAGVVLNP----G------------T---PLTAIEYV-LDAVDLVLIMSVNPGFGGQSF  158 (230)
T ss_dssp             CSC---HHHHHHHH-HHTT-SEEEEEECT----T------------C---CGGGGTTT-TTTCSEEEEESSCTTCSSCCC
T ss_pred             chh---HHHHHHHH-HHcC-CcEEEEeCC----C------------C---CHHHHHHH-HhhCCEEEEEEEcCCCCCccc
Confidence            332   13344444 3444 233333311    1            0   01111122 247887766555432222333


Q ss_pred             CH---HHHHHHhhcC-----CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHH
Q 021156          245 DD---ELVALLGKYS-----PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWH  307 (316)
Q Consensus       245 d~---eli~~l~~~~-----~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~  307 (316)
                      ++   +.++++++..     ++|+++.|||+ ++.+.++.+.|  +++++|||++  +..+ ++++..+.+
T Consensus       159 ~~~~~~~i~~l~~~~~~~~~~~pi~v~GGI~-~~n~~~~~~aG--ad~vvvgSaI--~~a~-dp~~a~~~l  223 (230)
T 1rpx_A          159 IESQVKKISDLRKICAERGLNPWIEVDGGVG-PKNAYKVIEAG--ANALVAGSAV--FGAP-DYAEAIKGI  223 (230)
T ss_dssp             CTTHHHHHHHHHHHHHHHTCCCEEEEESSCC-TTTHHHHHHHT--CCEEEESHHH--HTSS-CHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHHcC--CCEEEEChhh--hCCC-CHHHHHHHH
Confidence            44   4456666554     78999999999 78999999998  9999999999  6533 355544433

>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A

Probab=98.69  E-value=3.4e-07  Score=83.51  Aligned_cols=185  Identities=21%  Similarity=0.115  Sum_probs=115.2

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHH---hCCCcE--EEecCC-------C---HHHHHHHHHcCCCE
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALH---AYPGGL--QVGGGI-------N---SDNSLSYIEEGATH  157 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~---~~~~pl--~vGGGI-------r---~e~~~~~l~~Gad~  157 (316)
                      .+|.++++.+.+.|+..+.+ +        +.+.+.+.   ...+|+  .+++|.       .   .++++.++++||+.
T Consensus        45 ~~~~~~~~~~~~~g~~~i~~-~--------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~~~~~v~~a~~~Ga~~  115 (273)
T 2qjg_A           45 IDIRKTVNDVAEGGANAVLL-H--------KGIVRHGHRGYGKDVGLIIHLSGGTAISPNPLKKVIVTTVEEAIRMGADA  115 (273)
T ss_dssp             SSHHHHHHHHHHHTCSEEEE-C--------HHHHHSCCCSSSCCCEEEEECEECCTTSSSTTCCEECSCHHHHHHTTCSE
T ss_pred             hhHHHHHHHHHhcCCCEEEe-C--------HHHHHHHHHhhcCCCCEEEEEcCCCcCCCCcccchHHHHHHHHHHcCCCE
Confidence            58889999999999887643 1        11112111   123455  455654       2   47799999999999


Q ss_pred             E--Ee--CCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEe
Q 021156          158 V--IV--TSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVH  233 (316)
Q Consensus       158 V--Vi--gt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvt  233 (316)
                      |  .+  ++.....-.-....+.++.+.+|- .+++-++.   +|. .+ ..+|..   -++.+.++.+.+.|++.+.++
T Consensus       116 v~~~l~~~~~~~~~~~~~~~~v~~~~~~~g~-~viv~~~~---~G~-~l-~~~~~~---~~~~~~a~~a~~~Gad~i~~~  186 (273)
T 2qjg_A          116 VSIHVNVGSDEDWEAYRDLGMIAETCEYWGM-PLIAMMYP---RGK-HI-QNERDP---ELVAHAARLGAELGADIVKTS  186 (273)
T ss_dssp             EEEEEEETSTTHHHHHHHHHHHHHHHHHHTC-CEEEEEEE---CST-TC-SCTTCH---HHHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEEEecCCCCHHHHHHHHHHHHHHHHHcCC-CEEEEeCC---CCc-cc-CCCCCH---hHHHHHHHHHHHcCCCEEEEC
Confidence            8  43  332110000002233444455663 34444432   221 11 122221   124455588999999976654


Q ss_pred             ecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCC--HHH----HHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHH
Q 021156          234 GVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTT--MAD----LEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWH  307 (316)
Q Consensus       234 di~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s--~eD----i~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~  307 (316)
                      .        +.|++.++++.+.+++||+++|||++  .+|    +.++++.|  ++||++|+++  +..+.+.+.+.++.
T Consensus       187 ~--------~~~~~~l~~i~~~~~ipvva~GGi~~~~~~~~~~~~~~~~~~G--a~gv~vg~~i--~~~~~~~~~~~~l~  254 (273)
T 2qjg_A          187 Y--------TGDIDSFRDVVKGCPAPVVVAGGPKTNTDEEFLQMIKDAMEAG--AAGVAVGRNI--FQHDDVVGITRAVC  254 (273)
T ss_dssp             C--------CSSHHHHHHHHHHCSSCEEEECCSCCSSHHHHHHHHHHHHHHT--CSEEECCHHH--HTSSSHHHHHHHHH
T ss_pred             C--------CCCHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcC--CcEEEeeHHh--hCCCCHHHHHHHHH
Confidence            2        36899999999888999999999995  788    66666788  9999999999  88776555554443

>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*

Probab=98.69  E-value=7.7e-08  Score=92.42  Aligned_cols=149  Identities=13%  Similarity=0.043  Sum_probs=99.9

Q ss_pred             HHHHHHHHcCCCEEEeCCe--------------eecC---C------CCCHHHHHHHHHHhcCceEEEeeeeee-cCCee
Q 021156          145 DNSLSYIEEGATHVIVTSY--------------VFNN---G------QMDLERLKDLVRVVGKQRLVLDLSCRK-KDGKY  200 (316)
Q Consensus       145 e~~~~~l~~Gad~VVigt~--------------~~~~---~------~~~~eli~ei~~~~G~~~IvvslD~k~-~~g~~  200 (316)
                      +.++++.++|+|-|=|...              .+.|   |      ++..|.++.+.+.+|++.|.+-+.... .++  
T Consensus       170 ~aA~~a~~aGfDgVEIh~a~GYLl~QFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~v~vrls~~~~~~~--  247 (377)
T 2r14_A          170 QAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFLELFG--  247 (377)
T ss_dssp             HHHHHHHHHTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCCTT--
T ss_pred             HHHHHHHHcCCCEEEEcCcccchHHhccCCccccCCCccCcchhhchHHHHHHHHHHHHHcCCCcEEEEeccccccCC--
Confidence            3456667899999888432              1111   1      123466777777787554444332210 000  


Q ss_pred             EEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCC
Q 021156          201 AIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGI  280 (316)
Q Consensus       201 ~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~  280 (316)
                        ...+|..   .+..++++.+++.|++.+-++....++...+.+++.++++++.+++|||++||+ +.+++.++++.| 
T Consensus       248 --~~~~~~~---~~~~~la~~le~~Gvd~i~v~~~~~~~~~~~~~~~~~~~ik~~~~iPvi~~Ggi-~~~~a~~~l~~g-  320 (377)
T 2r14_A          248 --LTDDEPE---AMAFYLAGELDRRGLAYLHFNEPDWIGGDITYPEGFREQMRQRFKGGLIYCGNY-DAGRAQARLDDN-  320 (377)
T ss_dssp             --CCCSCHH---HHHHHHHHHHHHTTCSEEEEECCC------CCCTTHHHHHHHHCCSEEEEESSC-CHHHHHHHHHTT-
T ss_pred             --CCCCCCH---HHHHHHHHHHHHcCCCEEEEeCCcccCCCCcchHHHHHHHHHHCCCCEEEECCC-CHHHHHHHHHCC-
Confidence              0012221   246778999999999998777644333333347888999999999999999999 699999999998 


Q ss_pred             CcCEEEEccchhhccCcccHHHHH
Q 021156          281 GRVDVTVGSALDIFGGNLAYKDVV  304 (316)
Q Consensus       281 g~~gVivG~Al~~~~g~~~~~~~~  304 (316)
                      +++.|++||++  +.++..++++.
T Consensus       321 ~aD~V~igR~~--l~~P~l~~k~~  342 (377)
T 2r14_A          321 TADAVAFGRPF--IANPDLPERFR  342 (377)
T ss_dssp             SCSEEEESHHH--HHCTTHHHHHH
T ss_pred             CceEEeecHHH--HhCchHHHHHH
Confidence            59999999999  99998777765

>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1

Probab=98.67  E-value=1.1e-07  Score=86.30  Aligned_cols=80  Identities=16%  Similarity=0.113  Sum_probs=68.6

Q ss_pred             HHHHHHHHHcCCCEEEEeecCCccccCCC-CHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhc
Q 021156          216 DERVLDFLASYADEFLVHGVDVEGKKLGI-DDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIF  294 (316)
Q Consensus       216 ~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~-d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~  294 (316)
                      ...++++++.|++.+.-+. ..-|+..|. |+++++.+.+..++|||+.|||.+++|+.+++++|  +++|+||+|+  +
T Consensus       146 ~~~akrl~~~G~~aVmPlg-~pIGsG~Gi~~~~lI~~I~e~~~vPVI~eGGI~TPsDAa~AmeLG--AdgVlVgSAI--~  220 (265)
T 1wv2_A          146 PIIARQLAEIGCIAVMPLA-GLIGSGLGICNPYNLRIILEEAKVPVLVDAGVGTASDAAIAMELG--CEAVLMNTAI--A  220 (265)
T ss_dssp             HHHHHHHHHSCCSEEEECS-SSTTCCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHHT--CSEEEESHHH--H
T ss_pred             HHHHHHHHHhCCCEEEeCC-ccCCCCCCcCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcC--CCEEEEChHH--h
Confidence            4789999999999875433 246887888 99999999998899999999999999999999999  9999999999  6


Q ss_pred             cCcccH
Q 021156          295 GGNLAY  300 (316)
Q Consensus       295 ~g~~~~  300 (316)
                      ...-+.
T Consensus       221 ~a~dP~  226 (265)
T 1wv2_A          221 HAKDPV  226 (265)
T ss_dssp             TSSSHH
T ss_pred             CCCCHH
Confidence            544333

>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}

Probab=98.67  E-value=9.8e-07  Score=84.16  Aligned_cols=164  Identities=18%  Similarity=0.204  Sum_probs=109.1

Q ss_pred             CHHHHHHHHHHcCCCc-ceEEEecCCcccHHHHHHHHHhCCCcEEEecCCC--H-HHHHHHHHcCCCEEEeCCeeecCCC
Q 021156           94 SAAEFANLYKEDGLTG-GHAIMLGADPLSKAAAIEALHAYPGGLQVGGGIN--S-DNSLSYIEEGATHVIVTSYVFNNGQ  169 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~-l~lvDLda~~~~~~~i~~~v~~~~~pl~vGGGIr--~-e~~~~~l~~Gad~VVigt~~~~~~~  169 (316)
                      ++ ++|...+++|..+ +|     . ....+.+.+.++++.-++.+.-|.+  . +.++.+.++|+|.|++++..-.. +
T Consensus        55 e~-~lA~A~a~~Gg~gvi~-----~-~~s~ee~~~~i~~~~~~~~~~~g~~~~~~e~~~~a~~aGvdvI~id~a~G~~-~  126 (361)
T 3r2g_A           55 ES-NMANFMHSKGAMGALH-----R-FMTIEENIQEFKKCKGPVFVSVGCTENELQRAEALRDAGADFFCVDVAHAHA-K  126 (361)
T ss_dssp             SH-HHHHHHHHTTCEEBCC-----S-CSCHHHHHHHHHTCCSCCBEEECSSHHHHHHHHHHHHTTCCEEEEECSCCSS-H
T ss_pred             HH-HHHHHHHHcCCCEEEe-----C-CCCHHHHHHHHhhcceEEEEEcCCCHHHHHHHHHHHHcCCCEEEEeCCCCCc-H
Confidence            44 4888888887322 22     1 2345556666665544455555676  2 56999999999999987654221 1


Q ss_pred             CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccc--------c
Q 021156          170 MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGK--------K  241 (316)
Q Consensus       170 ~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~--------~  241 (316)
                      ..++.++.+.+.++.-.|++. ++                    ...+.++.+.+.|++.|.+ +... |.        .
T Consensus       127 ~~~e~I~~ir~~~~~~~Vi~G-~V--------------------~T~e~A~~a~~aGaD~I~V-g~g~-G~~~~tr~~~g  183 (361)
T 3r2g_A          127 YVGKTLKSLRQLLGSRCIMAG-NV--------------------ATYAGADYLASCGADIIKA-GIGG-GSVCSTRIKTG  183 (361)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEE-EE--------------------CSHHHHHHHHHTTCSEEEE-CCSS-SSCHHHHHHHC
T ss_pred             hHHHHHHHHHHhcCCCeEEEc-Cc--------------------CCHHHHHHHHHcCCCEEEE-cCCC-CcCccccccCC
Confidence            114677777777742223221 11                    1236789999999999886 3221 21        1


Q ss_pred             CC-CCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          242 LG-IDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       242 ~G-~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      .| +.++.+.++++... |||+.|||++.+|+.+++.+|  +++|++|+++
T Consensus       184 ~g~p~l~aI~~~~~~~~-PVIAdGGI~~~~di~kALa~G--Ad~V~iGr~f  231 (361)
T 3r2g_A          184 FGVPMLTCIQDCSRADR-SIVADGGIKTSGDIVKALAFG--ADFVMIGGML  231 (361)
T ss_dssp             CCCCHHHHHHHHTTSSS-EEEEESCCCSHHHHHHHHHTT--CSEEEESGGG
T ss_pred             ccHHHHHHHHHHHHhCC-CEEEECCCCCHHHHHHHHHcC--CCEEEEChHH
Confidence            12 35677777766555 999999999999999999998  9999999998

>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*

Probab=98.66  E-value=8.3e-08  Score=91.22  Aligned_cols=150  Identities=14%  Similarity=0.049  Sum_probs=104.1

Q ss_pred             HHHHHHHcCCCEEEeCCee--------------ecC---C------CCCHHHHHHHHHHhcCce-EEEeeeeeecCCeeE
Q 021156          146 NSLSYIEEGATHVIVTSYV--------------FNN---G------QMDLERLKDLVRVVGKQR-LVLDLSCRKKDGKYA  201 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~~--------------~~~---~------~~~~eli~ei~~~~G~~~-IvvslD~k~~~g~~~  201 (316)
                      .++++.++|+|-|=|..+-              +.|   |      ++..|.++.+.+.+|++. |.+-+...  +.   
T Consensus       157 aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVR~avG~d~pV~vRls~~--~~---  231 (349)
T 3hgj_A          157 GARRALRAGFQVIELHMAHGYLLSSFLSPLSNQRTDAYGGSLENRMRFPLQVAQAVREVVPRELPLFVRVSAT--DW---  231 (349)
T ss_dssp             HHHHHHHTTCCEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHSCTTSCEEEEEESC--CC---
T ss_pred             HHHHHHHcCCCEEEECCccchHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHHHHHHHhcCCceEEEEeccc--cc---
Confidence            4566778999998875432              111   1      122467777777787665 43333321  10   


Q ss_pred             EEeCCcceecccCHHHHHHHHHHcCCCEEEEeec--CCcc---ccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHH
Q 021156          202 IVTDRWQKFSDVYLDERVLDFLASYADEFLVHGV--DVEG---KKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIK  276 (316)
Q Consensus       202 v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi--~~dG---~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~  276 (316)
                       .-.||..   -+..++++.+++.|++.+-++.-  ....   ...+.+++.++++++.+++||+++||+.+.+++.+++
T Consensus       232 -~~~g~~~---~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~e~a~~~l  307 (349)
T 3hgj_A          232 -GEGGWSL---EDTLAFARRLKELGVDLLDCSSGGVVLRVRIPLAPGFQVPFADAVRKRVGLRTGAVGLITTPEQAETLL  307 (349)
T ss_dssp             -STTSCCH---HHHHHHHHHHHHTTCCEEEEECCCSCSSSCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCCHHHHHHHH
T ss_pred             -cCCCCCH---HHHHHHHHHHHHcCCCEEEEecCCcCcccccCCCccccHHHHHHHHHHcCceEEEECCCCCHHHHHHHH
Confidence             0124432   14678899999999998877641  1111   1245689999999988899999999999999999999


Q ss_pred             HhCCCcCEEEEccchhhccCcccHHHHHHHH
Q 021156          277 VAGIGRVDVTVGSALDIFGGNLAYKDVVAWH  307 (316)
Q Consensus       277 ~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~  307 (316)
                      +.| .++.|.+||++  +.+|..++++.+.+
T Consensus       308 ~~G-~aD~V~iGR~~--lanPdl~~k~~~~l  335 (349)
T 3hgj_A          308 QAG-SADLVLLGRVL--LRDPYFPLRAAKAL  335 (349)
T ss_dssp             HTT-SCSEEEESTHH--HHCTTHHHHHHHHT
T ss_pred             HCC-CceEEEecHHH--HhCchHHHHHHHHC
Confidence            998 58999999999  99997777766543

>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*

Probab=98.66  E-value=5.4e-08  Score=92.74  Aligned_cols=162  Identities=15%  Similarity=0.086  Sum_probs=105.2

Q ss_pred             CCcEEEe-cCCCHHH----HHHHH---HcCCCEEEeCCeeec--CC-C--CCHHHHHHHHHHhcCceEEEeeeeeecCCe
Q 021156          133 PGGLQVG-GGINSDN----SLSYI---EEGATHVIVTSYVFN--NG-Q--MDLERLKDLVRVVGKQRLVLDLSCRKKDGK  199 (316)
Q Consensus       133 ~~pl~vG-GGIr~e~----~~~~l---~~Gad~VVigt~~~~--~~-~--~~~eli~ei~~~~G~~~IvvslD~k~~~g~  199 (316)
                      +.|+.+. .|.+.++    ++++.   +.|+|.+.|+...-+  .+ .  .+|+.+.++.+.. ++..-+.+-+|..   
T Consensus       126 ~~pvivsI~G~~~~d~~~~a~~l~~~~~~g~d~ielNisCPn~~gg~~l~~~~e~~~~il~av-~~~~~~PV~vKi~---  201 (354)
T 4ef8_A          126 KKPLFLSMSGLSMRENVEMCKRLAAVATEKGVILELNLSCPNVPGKPQVAYDFDAMRQCLTAV-SEVYPHSFGVKMP---  201 (354)
T ss_dssp             TCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECSSCCSTTSCCGGGSHHHHHHHHHHH-HHHCCSCEEEEEC---
T ss_pred             CCcEEEEeccCCHHHHHHHHHHHhhhhhcCCCEEEEeCCCCCCCCchhhccCHHHHHHHHHHH-HHhhCCCeEEEec---
Confidence            4677665 4555333    34444   468999888654211  11 1  1488888888776 2332233433321   


Q ss_pred             eEEEeCCcceecccCHHHHHHHHHHcC-CCEEEEee-------cC--Cc----------cccCCC-----CHHHHHHHhh
Q 021156          200 YAIVTDRWQKFSDVYLDERVLDFLASY-ADEFLVHG-------VD--VE----------GKKLGI-----DDELVALLGK  254 (316)
Q Consensus       200 ~~v~~~gw~~~~~~~~~e~a~~~~~~G-a~~ilvtd-------i~--~d----------G~~~G~-----d~eli~~l~~  254 (316)
                           -+|..   .+..+.++.+.+.| ++.|+++.       +|  ..          |.++|+     +++.++++++
T Consensus       202 -----p~~d~---~~~~~~a~~~~~~Gg~d~I~~~NT~~~g~~idi~~~~~~~~~~~~~gGlSG~~i~p~a~~~i~~v~~  273 (354)
T 4ef8_A          202 -----PYFDF---AHFDAAAEILNEFPKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGLGGRYVLPTALANINAFYR  273 (354)
T ss_dssp             -----CCCSH---HHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCSGGGGEEEEEGGGGHHHHHHHHHHHHH
T ss_pred             -----CCCCH---HHHHHHHHHHHhCCCccEEEEecccCcceeeeccCCccccccccccCCCCCCCCchHHHHHHHHHHH
Confidence                 23321   13456677777888 99987632       22  11          223443     6889999987


Q ss_pred             cC-CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHHh
Q 021156          255 YS-PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       255 ~~-~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~~  309 (316)
                      .. ++|||++|||.+.+|+.+++..|  +++|++|+++ .|.|++.++++.+.+..
T Consensus       274 ~~~~ipII~~GGI~s~~da~~~l~aG--Ad~V~vgra~-l~~GP~~~~~i~~~l~~  326 (354)
T 4ef8_A          274 RCPGKLIFGCGGVYTGEDAFLHVLAG--ASMVQVGTAL-QEEGPSIFERLTSELLG  326 (354)
T ss_dssp             HCTTSEEEEESCCCSHHHHHHHHHHT--EEEEEECHHH-HHHCTTHHHHHHHHHHH
T ss_pred             hCCCCCEEEECCcCCHHHHHHHHHcC--CCEEEEhHHH-HHhCHHHHHHHHHHHHH
Confidence            75 79999999999999999999998  9999999998 24469888888765443

>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}

Probab=98.65  E-value=1.6e-06  Score=78.48  Aligned_cols=164  Identities=18%  Similarity=0.108  Sum_probs=112.6

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCC---------cc----cHHHHHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEe
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGAD---------PL----SKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIV  160 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~---------~~----~~~~i~~~v~~~~~pl~vGGGIr~e~~~~~l~~Gad~VVi  160 (316)
                      +..+.++...+.|++.+++=+=+..         ..    --..+.+.++..++|+++-.     +++-+...|||.|=+
T Consensus        44 ~~~~~~~~al~~Gv~~vqlR~K~~~~~~~~~~l~~~~~~~~a~~l~~l~~~~~~~liInd-----~~~lA~~~gAdGVHL  118 (243)
T 3o63_A           44 DLAQFAEAALAGGVDIIQLRDKGSPGELRFGPLQARDELAACEILADAAHRYGALFAVND-----RADIARAAGADVLHL  118 (243)
T ss_dssp             CHHHHHHHHHHTTCSEEEECCTTCHHHHHHCSCCHHHHHHHHHHHHHHHHHTTCEEEEES-----CHHHHHHHTCSEEEE
T ss_pred             hHHHHHHHHHHCCCCEEEEccCCCCccccccCCCHHHHHHHHHHHHHHHHhhCCEEEEeC-----HHHHHHHhCCCEEEe
Confidence            4667777777788887777554421         11    11234455566789999864     344577789999999


Q ss_pred             CCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccc
Q 021156          161 TSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGK  240 (316)
Q Consensus       161 gt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~  240 (316)
                      |.....     +.   ++.+.+|++. ++.+++.                   ++ +.+.+..+.|++.+.+..+-...+
T Consensus       119 g~~dl~-----~~---~~r~~~~~~~-~iG~S~h-------------------t~-~Ea~~A~~~GaDyI~vgpvf~T~t  169 (243)
T 3o63_A          119 GQRDLP-----VN---VARQILAPDT-LIGRSTH-------------------DP-DQVAAAAAGDADYFCVGPCWPTPT  169 (243)
T ss_dssp             CTTSSC-----HH---HHHHHSCTTC-EEEEEEC-------------------SH-HHHHHHHHSSCSEEEECCSSCCCC
T ss_pred             cCCcCC-----HH---HHHHhhCCCC-EEEEeCC-------------------CH-HHHHHHhhCCCCEEEEcCccCCCC
Confidence            886544     33   3334455443 3566653                   23 346777789999998866532222


Q ss_pred             c---CCCCHHHHHHHhhc--CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccC
Q 021156          241 K---LGIDDELVALLGKY--SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGG  296 (316)
Q Consensus       241 ~---~G~d~eli~~l~~~--~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g  296 (316)
                      .   ...+++.++++++.  .++||++.||| +.+++.++++.|  +++|.+|+++  +..
T Consensus       170 K~~~~~~gl~~l~~~~~~~~~~iPvvAiGGI-~~~ni~~~~~aG--a~gvav~sai--~~a  225 (243)
T 3o63_A          170 KPGRAAPGLGLVRVAAELGGDDKPWFAIGGI-NAQRLPAVLDAG--ARRIVVVRAI--TSA  225 (243)
T ss_dssp             -----CCCHHHHHHHHTC---CCCEEEESSC-CTTTHHHHHHTT--CCCEEESHHH--HTC
T ss_pred             CCCcchhhHHHHHHHHHhccCCCCEEEecCC-CHHHHHHHHHcC--CCEEEEeHHH--hCC
Confidence            2   23489999999876  58999999999 899999999998  9999999999  653

>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2

Probab=98.65  E-value=4.8e-07  Score=81.06  Aligned_cols=184  Identities=17%  Similarity=0.115  Sum_probs=116.5

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCc-cc---HHHHHHHHHh-CCCcEEEecCCC-H-HHHHHHHHcCCCEEEeCCe--e
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADP-LS---KAAAIEALHA-YPGGLQVGGGIN-S-DNSLSYIEEGATHVIVTSY--V  164 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~-~~---~~~i~~~v~~-~~~pl~vGGGIr-~-e~~~~~l~~Gad~VVigt~--~  164 (316)
                      +-.+.++...+.|++++|+=..|+.. ++   -..+.+.+++ ++.|+.+-==+. . +-++.++++|||.|.+.-+  .
T Consensus        18 ~l~~~i~~~~~~Gad~ihldi~DG~fvp~~~~g~~~v~~lr~~~~~~~~vhlmv~dp~~~i~~~~~aGadgv~vh~e~~~   97 (230)
T 1tqj_A           18 RLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNA   97 (230)
T ss_dssp             GHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCBCHHHHHHHGGGCCSEEEEEEESSSGGGTHHHHHHHTCSEEEEECSTTT
T ss_pred             HHHHHHHHHHHcCCCEEEEEEEecCCCcchhhhHHHHHHHHhhcCCcEEEEEEccCHHHHHHHHHHcCCCEEEECccccc
Confidence            45567778888899999998888752 11   1244455553 444554333233 3 3488999999999999876  5


Q ss_pred             ecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCC
Q 021156          165 FNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGI  244 (316)
Q Consensus       165 ~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~  244 (316)
                      ...    +..+.+..+.+| -++.+++...                +   +.+..+.+. .+++.+++..+...-..+.+
T Consensus        98 ~~~----~~~~~~~i~~~g-~~~gv~~~p~----------------t---~~e~~~~~~-~~~D~v~~msv~pg~ggq~~  152 (230)
T 1tqj_A           98 SPH----LHRTLCQIRELG-KKAGAVLNPS----------------T---PLDFLEYVL-PVCDLILIMSVNPGFGGQSF  152 (230)
T ss_dssp             CTT----HHHHHHHHHHTT-CEEEEEECTT----------------C---CGGGGTTTG-GGCSEEEEESSCC----CCC
T ss_pred             chh----HHHHHHHHHHcC-CcEEEEEeCC----------------C---cHHHHHHHH-hcCCEEEEEEeccccCCccC
Confidence            443    444444445565 3444555211                0   112222222 37897777666543111222


Q ss_pred             ---CHHHHHHHhhcC-----CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHH
Q 021156          245 ---DDELVALLGKYS-----PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHA  308 (316)
Q Consensus       245 ---d~eli~~l~~~~-----~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~  308 (316)
                         -++.++++++..     ++|+.+.|||+. +.+.++.+.|  ++++++|||+  |..+ ++++..+.++
T Consensus       153 ~~~~~~~i~~lr~~~~~~~~~~~I~v~GGI~~-~~~~~~~~aG--ad~vvvGSai--~~a~-d~~~~~~~l~  218 (230)
T 1tqj_A          153 IPEVLPKIRALRQMCDERGLDPWIEVDGGLKP-NNTWQVLEAG--ANAIVAGSAV--FNAP-NYAEAIAGVR  218 (230)
T ss_dssp             CGGGHHHHHHHHHHHHHHTCCCEEEEESSCCT-TTTHHHHHHT--CCEEEESHHH--HTSS-CHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhcCCCCcEEEECCcCH-HHHHHHHHcC--CCEEEECHHH--HCCC-CHHHHHHHHH
Confidence               467788887766     799999999998 9999999998  9999999999  7543 3555544443

>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}

Probab=98.63  E-value=8.6e-07  Score=80.90  Aligned_cols=186  Identities=15%  Similarity=0.035  Sum_probs=106.2

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecC-----CcccH--------------H---HHHHHHH-hC-CCcEEEecCCC------
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGA-----DPLSK--------------A---AAIEALH-AY-PGGLQVGGGIN------  143 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda-----~~~~~--------------~---~i~~~v~-~~-~~pl~vGGGIr------  143 (316)
                      .-+++++.+.+.|++.+.+ ..--     ..+..              .   .+.+.++ .+ ++|+.+=+=.+      
T Consensus        32 ~~~~~~~~l~~~G~D~IEl-G~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pi~~m~y~n~v~~~g  110 (262)
T 2ekc_A           32 TSLKAFKEVLKNGTDILEI-GFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLLMTYYNPIFRIG  110 (262)
T ss_dssp             HHHHHHHHHHHTTCSEEEE-ECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEECCHHHHHHHC
T ss_pred             HHHHHHHHHHHcCCCEEEE-CCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCEEEEecCcHHHHhh
Confidence            3567899999999997666 2211     11111              1   2234444 45 78987732222      


Q ss_pred             -HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH
Q 021156          144 -SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF  222 (316)
Q Consensus       144 -~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~  222 (316)
                       .+.++.+.++|+|.+++.....+.    .+.+.+..+++|- .+   +..        +.        ..+..+.++.+
T Consensus       111 ~~~f~~~~~~aG~dgvii~dl~~ee----~~~~~~~~~~~gl-~~---i~l--------~~--------p~t~~~rl~~i  166 (262)
T 2ekc_A          111 LEKFCRLSREKGIDGFIVPDLPPEE----AEELKAVMKKYVL-SF---VPL--------GA--------PTSTRKRIKLI  166 (262)
T ss_dssp             HHHHHHHHHHTTCCEEECTTCCHHH----HHHHHHHHHHTTC-EE---CCE--------EC--------TTCCHHHHHHH
T ss_pred             HHHHHHHHHHcCCCEEEECCCCHHH----HHHHHHHHHHcCC-cE---EEE--------eC--------CCCCHHHHHHH
Confidence             134778889999998887554432    3334444455651 11   111        10        00123445555


Q ss_pred             HHcCCCEEEEeec-CCccccCCCC----HHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccC-
Q 021156          223 LASYADEFLVHGV-DVEGKKLGID----DELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGG-  296 (316)
Q Consensus       223 ~~~Ga~~ilvtdi-~~dG~~~G~d----~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g-  296 (316)
                      .+...+.+.+..+ ...|...+..    .++++++++.+++||.++|||++.+++.+ +..+  +++||||+|+  +.. 
T Consensus       167 a~~a~gfiy~vs~~g~TG~~~~~~~~~~~~~v~~vr~~~~~pv~vG~GI~t~e~~~~-~~~g--ADgvIVGSai--~~~~  241 (262)
T 2ekc_A          167 CEAADEMTYFVSVTGTTGAREKLPYERIKKKVEEYRELCDKPVVVGFGVSKKEHARE-IGSF--ADGVVVGSAL--VKLA  241 (262)
T ss_dssp             HHHCSSCEEEESSCC---------CHHHHHHHHHHHHHCCSCEEEESSCCSHHHHHH-HHTT--SSEEEECHHH--HHHH
T ss_pred             HHhCCCCEEEEecCCccCCCCCcCcccHHHHHHHHHhhcCCCEEEeCCCCCHHHHHH-HHcC--CCEEEECHHH--Hhhh
Confidence            5555444432222 2334444443    36888998888999999999999999999 5667  8999999999  643 


Q ss_pred             -cccHHHHHHHHHh
Q 021156          297 -NLAYKDVVAWHAQ  309 (316)
Q Consensus       297 -~~~~~~~~~~~~~  309 (316)
                       .=..+.+.++++.
T Consensus       242 ~~~~~~~~~~~~~~  255 (262)
T 2ekc_A          242 GQKKIEDLGNLVKE  255 (262)
T ss_dssp             HTTCHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHH
Confidence             1135556666554

>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*

Probab=98.63  E-value=3.4e-08  Score=92.09  Aligned_cols=147  Identities=15%  Similarity=0.030  Sum_probs=97.4

Q ss_pred             HHHHHHHHcCCC---EEEeCCee--ecCC-CC--CHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeC-CcceecccCH
Q 021156          145 DNSLSYIEEGAT---HVIVTSYV--FNNG-QM--DLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTD-RWQKFSDVYL  215 (316)
Q Consensus       145 e~~~~~l~~Gad---~VVigt~~--~~~~-~~--~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~-gw~~~~~~~~  215 (316)
                      +-++.+.++|+|   .|-++...  .+.+ .+  +++.+.++.+.. ++.+-+.+-+         ++. +|.   ..+.
T Consensus       110 ~~a~~~~~~g~d~~~~iein~~~P~~~g~~~~g~~~~~~~~ii~~v-r~~~~~Pv~v---------K~~~~~~---~~~~  176 (314)
T 2e6f_A          110 AMVRRLAPVAQEKGVLLELNLSCPNVPGKPQVAYDFEAMRTYLQQV-SLAYGLPFGV---------KMPPYFD---IAHF  176 (314)
T ss_dssp             HHHHHHHHHHHHHCCEEEEECCCCCSTTCCCGGGSHHHHHHHHHHH-HHHHCSCEEE---------EECCCCC---HHHH
T ss_pred             HHHHHHHHhCCCcCceEEEEcCCCCCCCchhhcCCHHHHHHHHHHH-HHhcCCCEEE---------EECCCCC---HHHH
Confidence            346667778889   78775421  1100 11  366666666555 2221112222         222 232   1135


Q ss_pred             HHHHHHHHHcC-CCEEEEeecC-----Cc--------------cccCCC-----CHHHHHHHhhcC-CCcEEEEeCCCCH
Q 021156          216 DERVLDFLASY-ADEFLVHGVD-----VE--------------GKKLGI-----DDELVALLGKYS-PIPVTYAGGVTTM  269 (316)
Q Consensus       216 ~e~a~~~~~~G-a~~ilvtdi~-----~d--------------G~~~G~-----d~eli~~l~~~~-~iPVIasGGI~s~  269 (316)
                      .++++.+.+.| ++.+.+|+..     .|              |.++|+     .++.++++++.+ ++|||++|||++.
T Consensus       177 ~~~a~~~~~aG~~d~i~v~~~~~~~~~i~~~~~~~~~~~~~~~gG~sg~~~~p~~~~~i~~v~~~~~~ipvi~~GGI~~~  256 (314)
T 2e6f_A          177 DTAAAVLNEFPLVKFVTCVNSVGNGLVIDAESESVVIKPKQGFGGLGGKYILPTALANVNAFYRRCPDKLVFGCGGVYSG  256 (314)
T ss_dssp             HHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEESGGGHHHHHHHHHHHHHHCTTSEEEEESSCCSH
T ss_pred             HHHHHHHHhcCCceEEEEeCCCCccccccCCCCCcccccCcCCCccCcccccHHHHHHHHHHHHhcCCCCEEEECCCCCH
Confidence            66799999999 9999877633     11              112332     378899998888 9999999999999


Q ss_pred             HHHHHHHHhCCCcCEEEEccchhhc-cCcccHHHHHHHHH
Q 021156          270 ADLEKIKVAGIGRVDVTVGSALDIF-GGNLAYKDVVAWHA  308 (316)
Q Consensus       270 eDi~~l~~~G~g~~gVivG~Al~~~-~g~~~~~~~~~~~~  308 (316)
                      +|+.+++..|  +++|++|+++  + ++++.++++.+.+.
T Consensus       257 ~da~~~l~~G--Ad~V~ig~~~--l~~~p~~~~~i~~~l~  292 (314)
T 2e6f_A          257 EDAFLHILAG--ASMVQVGTAL--QEEGPGIFTRLEDELL  292 (314)
T ss_dssp             HHHHHHHHHT--CSSEEECHHH--HHHCTTHHHHHHHHHH
T ss_pred             HHHHHHHHcC--CCEEEEchhh--HhcCcHHHHHHHHHHH
Confidence            9999999998  9999999999  8 49988888776443

>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}

Probab=98.62  E-value=4.4e-07  Score=82.44  Aligned_cols=183  Identities=12%  Similarity=0.092  Sum_probs=116.3

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCcc---cHHHHHHHHHhCCC-cEEEecCCC-HHHHHHHHHcCCCEEEeCCeeec--
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADPL---SKAAAIEALHAYPG-GLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFN--  166 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~~---~~~~i~~~v~~~~~-pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~--  166 (316)
                      ++..+.+.....|++-+.+. +-....   ....+.+.+.  .+ .+---.|++ .+|+.+..+.+.+  ++||...+  
T Consensus        24 ~~~~~~~ai~asg~eivtva-~rR~~~~~~~~~~~~~~i~--~~~~lpntaG~~taeeAv~~a~lare--~~gt~~iKlE   98 (268)
T 2htm_A           24 DFGVMREAIAAAKAEVVTVS-VRRVELKAPGHVGLLEALE--GVRLLPNTAGARTAEEAVRLARLGRL--LTGERWVKLE   98 (268)
T ss_dssp             CHHHHHHHHHHTTCSEEEEE-EEECC-------CHHHHTT--TSEEEEBCTTCCSHHHHHHHHHHHHH--HHCCSEEBCC
T ss_pred             CHHHHHHHHHHhCCCEEEEE-ccccCCCCCCcccHHHHHh--hhhccCcccCCCCHHHHHHHHHhhhH--hcCcceeeee
Confidence            68778888999997755544 543211   2233445444  33 245678898 4888877776443  46777643  


Q ss_pred             ---CCC-C--CHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecC-Ccc
Q 021156          167 ---NGQ-M--DLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVD-VEG  239 (316)
Q Consensus       167 ---~~~-~--~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~-~dG  239 (316)
                         +.+ +  |+...-+..+..          ++  +| |.|.-     ....++ +.++++++.|+..+  .... .-|
T Consensus        99 vi~d~~~l~pD~~~tv~aa~~L----------~k--~G-f~Vlp-----y~~~D~-~~ak~l~~~G~~aV--mPlg~pIG  157 (268)
T 2htm_A           99 VIPDPTYLLPDPLETLKAAERL----------IE--ED-FLVLP-----YMGPDL-VLAKRLAALGTATV--MPLAAPIG  157 (268)
T ss_dssp             CCSCTTTTCCCHHHHHHHHHHH----------HH--TT-CEECC-----EECSCH-HHHHHHHHHTCSCB--EEBSSSTT
T ss_pred             eccCccccCcCHHHHHHHHHHH----------HH--CC-CEEee-----ccCCCH-HHHHHHHhcCCCEE--EecCccCc
Confidence               111 1  222222222222          01  22 11110     000134 78999999999976  4543 368


Q ss_pred             ccCCC-CHHHHHHHhh-cCC-CcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHH
Q 021156          240 KKLGI-DDELVALLGK-YSP-IPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAW  306 (316)
Q Consensus       240 ~~~G~-d~eli~~l~~-~~~-iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~  306 (316)
                      +..|. +.++++.+.+ ..+ +|||+.|||.+++|+..++++|  ++||++|+|+  +...-+...+.++
T Consensus       158 sG~Gi~~~~~L~~i~~~~~~~vPVI~~GGI~tpsDAa~AmeLG--AdgVlVgSAI--~~a~dP~~ma~af  223 (268)
T 2htm_A          158 SGWGVRTRALLELFAREKASLPPVVVDAGLGLPSHAAEVMELG--LDAVLVNTAI--AEAQDPPAMAEAF  223 (268)
T ss_dssp             TCCCSTTHHHHHHHHHTTTTSSCBEEESCCCSHHHHHHHHHTT--CCEEEESHHH--HTSSSHHHHHHHH
T ss_pred             CCcccCCHHHHHHHHHhcCCCCeEEEeCCCCCHHHHHHHHHcC--CCEEEEChHH--hCCCCHHHHHHHH
Confidence            88888 8999999988 678 9999999999999999999999  9999999999  7555444334333

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=98.59  E-value=2e-07  Score=99.96  Aligned_cols=156  Identities=15%  Similarity=0.052  Sum_probs=103.5

Q ss_pred             CCcEEE--ecCCC---H-HHHHHHHHcCCCEEEeCCeeecC------C---CCCHHHHHHHHHHhcCceEEEeeeeeecC
Q 021156          133 PGGLQV--GGGIN---S-DNSLSYIEEGATHVIVTSYVFNN------G---QMDLERLKDLVRVVGKQRLVLDLSCRKKD  197 (316)
Q Consensus       133 ~~pl~v--GGGIr---~-e~~~~~l~~Gad~VVigt~~~~~------~---~~~~eli~ei~~~~G~~~IvvslD~k~~~  197 (316)
                      +.|+++  .+|-.   . +-++.+.++|+|.|.|+...-..      |   ..+++++.++.+.. ++.+-+.+-+|   
T Consensus       634 ~~~~i~~i~~g~~~~~~~~~a~~~~~~g~d~iein~~~P~~~~~~~~G~~~~~~~~~~~~iv~~v-~~~~~~Pv~vK---  709 (1025)
T 1gte_A          634 DNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWV-RQAVQIPFFAK---  709 (1025)
T ss_dssp             TSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHHH-HHHCSSCEEEE---
T ss_pred             CCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCcccccccCHHHHHHHHHHH-HHhhCCceEEE---
Confidence            466644  35543   2 33556667999999985332110      0   01477777777766 23322233333   


Q ss_pred             CeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEe----------------------ecCCccccCCC-C----HHHHH
Q 021156          198 GKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVH----------------------GVDVEGKKLGI-D----DELVA  250 (316)
Q Consensus       198 g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvt----------------------di~~dG~~~G~-d----~eli~  250 (316)
                            ....    ..+..++++.+.+.|++.|.++                      .....|.+.|+ +    +++++
T Consensus       710 ------~~~~----~~~~~~~a~~~~~~G~d~i~v~Nt~~~~~~~~~~~~~~~~~~~~gr~~~gg~sg~~~~~~~~~~v~  779 (1025)
T 1gte_A          710 ------LTPN----VTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVT  779 (1025)
T ss_dssp             ------ECSC----SSCHHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHHHHH
T ss_pred             ------eCCC----hHHHHHHHHHHHHcCCCEEEEeccccccccccccccccccccccccccCCCCCcccchhHHHHHHH
Confidence                  2111    1257889999999999999883                      12233444565 4    36888


Q ss_pred             HHhhcC-CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhcc-CcccHHHHHHH
Q 021156          251 LLGKYS-PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFG-GNLAYKDVVAW  306 (316)
Q Consensus       251 ~l~~~~-~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~-g~~~~~~~~~~  306 (316)
                      ++++.+ ++|||++|||+|.+|+.+++.+|  +++|+||+++  +. ++-.++++.+-
T Consensus       780 ~v~~~~~~ipvi~~GGI~s~~da~~~l~~G--a~~v~vg~~~--l~~~~~~~~~~~~~  833 (1025)
T 1gte_A          780 TIARALPGFPILATGGIDSAESGLQFLHSG--ASVLQVCSAV--QNQDFTVIQDYCTG  833 (1025)
T ss_dssp             HHHHHSTTCCEEEESSCCSHHHHHHHHHTT--CSEEEESHHH--HTSCTTHHHHHHHH
T ss_pred             HHHHHcCCCCEEEecCcCCHHHHHHHHHcC--CCEEEEeecc--ccCCccHHHHHHHH
Confidence            898877 89999999999999999999988  9999999999  75 55445555543

>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1

Probab=98.59  E-value=2e-07  Score=90.16  Aligned_cols=121  Identities=17%  Similarity=0.177  Sum_probs=86.3

Q ss_pred             HHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHH
Q 021156          145 DNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLA  224 (316)
Q Consensus       145 e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~  224 (316)
                      +.++.++++|++.|.+++.. .+++..++.++++.+.+|.-.|++ -.+                    ...+.++.+.+
T Consensus       156 ~~a~~~~~~G~d~i~i~~~~-g~~~~~~e~i~~ir~~~~~~pviv-~~v--------------------~~~~~a~~a~~  213 (404)
T 1eep_A          156 ERVEELVKAHVDILVIDSAH-GHSTRIIELIKKIKTKYPNLDLIA-GNI--------------------VTKEAALDLIS  213 (404)
T ss_dssp             HHHHHHHHTTCSEEEECCSC-CSSHHHHHHHHHHHHHCTTCEEEE-EEE--------------------CSHHHHHHHHT
T ss_pred             HHHHHHHHCCCCEEEEeCCC-CChHHHHHHHHHHHHHCCCCeEEE-cCC--------------------CcHHHHHHHHh
Confidence            67888999999999986543 231222456666667663223322 011                    12478899999


Q ss_pred             cCCCEEEEeecCC---------ccccCCCCHHHHHHHhh---cCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          225 SYADEFLVHGVDV---------EGKKLGIDDELVALLGK---YSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       225 ~Ga~~ilvtdi~~---------dG~~~G~d~eli~~l~~---~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      .|++.|.+ ....         +| ..+++++.+..+.+   ..++|||++|||++.+|+.+++.+|  +++|++|+++
T Consensus       214 ~Gad~I~v-g~~~G~~~~~~~~~~-~g~p~~~~l~~v~~~~~~~~ipVia~GGI~~~~d~~~ala~G--Ad~V~iG~~~  288 (404)
T 1eep_A          214 VGADCLKV-GIGPGSICTTRIVAG-VGVPQITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAG--ADSVMIGNLF  288 (404)
T ss_dssp             TTCSEEEE-CSSCSTTSHHHHHHC-CCCCHHHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHHHT--CSEEEECHHH
T ss_pred             cCCCEEEE-CCCCCcCcCccccCC-CCcchHHHHHHHHHHHhhcCceEEEECCCCCHHHHHHHHHcC--CCHHhhCHHH
Confidence            99999987 2211         12 24567777777765   4689999999999999999999998  9999999998

>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*

Probab=98.58  E-value=2.5e-07  Score=88.44  Aligned_cols=150  Identities=16%  Similarity=-0.040  Sum_probs=102.4

Q ss_pred             HHHHHHHcCCCEEEeCCe--------------eecC---C------CCCHHHHHHHHHHhcCce-EEEeeeeeecCCeeE
Q 021156          146 NSLSYIEEGATHVIVTSY--------------VFNN---G------QMDLERLKDLVRVVGKQR-LVLDLSCRKKDGKYA  201 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~--------------~~~~---~------~~~~eli~ei~~~~G~~~-IvvslD~k~~~g~~~  201 (316)
                      .++++.++|+|-|=|..+              .++|   |      ++..|.++.+.+.+|++. |.+-+...  +-   
T Consensus       163 aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~d~pV~vRis~~--~~---  237 (363)
T 3l5l_A          163 AARRARDAGFEWIELHFAHGYLGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAVREVWPENLPLTARFGVL--EY---  237 (363)
T ss_dssp             HHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHTTSCTTSCEEEEEEEE--CS---
T ss_pred             HHHHHHHcCCCEEEEccccchHHHHccCCCcCCCCcccCcCHHHHHHHHHHHHHHHHHHcCCCceEEEEecch--hc---
Confidence            356667899999888643              1111   1      122456666666676553 33333221  00   


Q ss_pred             EEeCC-cceecccCHHHHHHHHHHcCCCEEEEeecCCccc-----cCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHH
Q 021156          202 IVTDR-WQKFSDVYLDERVLDFLASYADEFLVHGVDVEGK-----KLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKI  275 (316)
Q Consensus       202 v~~~g-w~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~-----~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l  275 (316)
                       .-.| |..   -+..++++.+++.|++.+-++.-.....     ..+.++++++.+++.+++||+++|||.+.+++.++
T Consensus       238 -~~~G~~~~---~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~GgI~s~e~a~~~  313 (363)
T 3l5l_A          238 -DGRDEQTL---EESIELARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAERVRREAKLPVTSAWGFGTPQLAEAA  313 (363)
T ss_dssp             -SSCHHHHH---HHHHHHHHHHHHTTCCEEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHTCCEEECSSTTSHHHHHHH
T ss_pred             -CCCCCCCH---HHHHHHHHHHHHcCCCEEEEecCccccccccCCCcchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHH
Confidence             0012 221   2467889999999999887765322111     23458899999998889999999999999999999


Q ss_pred             HHhCCCcCEEEEccchhhccCcccHHHHHHHH
Q 021156          276 KVAGIGRVDVTVGSALDIFGGNLAYKDVVAWH  307 (316)
Q Consensus       276 ~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~  307 (316)
                      ++.| .++.|.+||++  +.+|..++++.+.+
T Consensus       314 l~~G-~aD~V~iGR~~--lanPdl~~k~~~~l  342 (363)
T 3l5l_A          314 LQAN-QLDLVSVGRAH--LADPHWAYFAAKEL  342 (363)
T ss_dssp             HHTT-SCSEEECCHHH--HHCTTHHHHHHHHT
T ss_pred             HHCC-CccEEEecHHH--HhCchHHHHHHHHc
Confidence            9998 58999999999  99998777776544

>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*

Probab=98.57  E-value=7.8e-08  Score=93.21  Aligned_cols=92  Identities=18%  Similarity=0.217  Sum_probs=76.0

Q ss_pred             CHHHHHHHHHHcCCCEEEEeecCC-----------ccccCCC-C----HHHHHHHhhcC--CCcEEEEeCCCCHHHHHHH
Q 021156          214 YLDERVLDFLASYADEFLVHGVDV-----------EGKKLGI-D----DELVALLGKYS--PIPVTYAGGVTTMADLEKI  275 (316)
Q Consensus       214 ~~~e~a~~~~~~Ga~~ilvtdi~~-----------dG~~~G~-d----~eli~~l~~~~--~iPVIasGGI~s~eDi~~l  275 (316)
                      ++.++++.+++.|++.|++|....           .|.++|+ +    +++++++++.+  ++|||++|||+|.+|+.++
T Consensus       284 ~i~~iA~~a~~aGaDgIiv~Ntt~~r~dl~~~~~~~GGlSG~a~~p~al~~I~~v~~~v~~~iPIIg~GGI~s~eDa~e~  363 (415)
T 3i65_A          284 QKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEK  363 (415)
T ss_dssp             HHHHHHHHHHHHTCSEEEECCCBSCCCCCGGGTTCCSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEECSSCCSHHHHHHH
T ss_pred             HHHHHHHHHHHcCCcEEEEeCCCcccccccccccccCCcCCccchHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHH
Confidence            478899999999999999877543           2444564 3    37889998887  7999999999999999999


Q ss_pred             HHhCCCcCEEEEccchhhccCcccHHHHHHHHH
Q 021156          276 KVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHA  308 (316)
Q Consensus       276 ~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~  308 (316)
                      +.+|  +++|+||+++ .|.|++.++++.+.+.
T Consensus       364 l~aG--Ad~VqIgra~-l~~GP~~~~~i~~~L~  393 (415)
T 3i65_A          364 IEAG--ASVCQLYSCL-VFNGMKSAVQIKRELN  393 (415)
T ss_dssp             HHHT--EEEEEESHHH-HHHGGGHHHHHHHHHH
T ss_pred             HHcC--CCEEEEcHHH-HhcCHHHHHHHHHHHH
Confidence            9998  9999999998 4567988888876544

>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*

Probab=98.55  E-value=5.4e-08  Score=87.60  Aligned_cols=175  Identities=15%  Similarity=0.127  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHcCCCcceEEEecCC-cccHH---HHHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCC
Q 021156           95 AAEFANLYKEDGLTGGHAIMLGAD-PLSKA---AAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQM  170 (316)
Q Consensus        95 p~e~a~~~~~~G~~~l~lvDLda~-~~~~~---~i~~~v~~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~  170 (316)
                      ..+.++.+.+.|++   ++-|... ..+..   .+.+.+++.++|+..=++.+     ..+.+|+|-+++=......   
T Consensus        22 t~~~~~~l~~~GaD---~IelG~S~g~t~~~~~~~v~~ir~~~~Pivl~~y~~-----n~i~~gvDg~iipdLp~ee---   90 (234)
T 2f6u_A           22 TDEIIKAVADSGTD---AVMISGTQNVTYEKARTLIEKVSQYGLPIVVEPSDP-----SNVVYDVDYLFVPTVLNSA---   90 (234)
T ss_dssp             CHHHHHHHHTTTCS---EEEECCCTTCCHHHHHHHHHHHTTSCCCEEECCSSC-----CCCCCCSSEEEEEEETTBS---
T ss_pred             cHHHHHHHHHcCCC---EEEECCCCCCCHHHHHHHHHHhcCCCCCEEEecCCc-----chhhcCCCEEEEcccCCCC---
Confidence            45678888888987   4444432 22233   34444455679988877773     1117899999887665544   


Q ss_pred             CHHHH----HHHH-------HHhc-----CceEEE---eeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCC---
Q 021156          171 DLERL----KDLV-------RVVG-----KQRLVL---DLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYAD---  228 (316)
Q Consensus       171 ~~eli----~ei~-------~~~G-----~~~Ivv---slD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~---  228 (316)
                      +++++    .+..       +++|     -+.|-.   -+.-   +++ .++.......  .++ +.++.+.+.|.+   
T Consensus        91 ~~~~~~g~~~~~~~~~~~~~~~~g~~~~~l~~I~~gYil~~P---~~~-~~rl~~g~~~--~~~-e~~~~~a~~g~~~l~  163 (234)
T 2f6u_A           91 DGDWITGKHAQWVRMHYENLQKFTEIIESEFIQIEGYIVLNP---DSA-VARVTKALCN--IDK-ELAASYALVGEKLFN  163 (234)
T ss_dssp             BGGGTTHHHHHHHHTTGGGHHHHHHHHHSTTEEEEEEEECCT---TSH-HHHHTTBCCC--CCH-HHHHHHHHHHHHTTC
T ss_pred             CHHHHhhhHHHHHHhhhhhHHHcCCcccceeeeecceEEECC---CCc-eEEeecCCCC--CCH-HHHHHHHHhhhhhcC
Confidence            24444    1222       4454     333321   1110   111 1111111111  244 777777777751   


Q ss_pred             -EEEEeecCCccccCCCCHHHHHHHhhcC-CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccC
Q 021156          229 -EFLVHGVDVEGKKLGIDDELVALLGKYS-PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGG  296 (316)
Q Consensus       229 -~ilvtdi~~dG~~~G~d~eli~~l~~~~-~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g  296 (316)
                       +++|.+.  .|  .+.+.++++++++.+ ++|++++|||+++++++++++ |  +++|+||+|+  ++.
T Consensus       164 ~~~Vyl~~--~G--~~~~~~~i~~i~~~~~~~Pv~vGgGI~s~e~a~~~~~-g--Ad~VIVGSa~--v~~  224 (234)
T 2f6u_A          164 LPIIYIEY--SG--TYGNPELVAEVKKVLDKARLFYGGGIDSREKAREMLR-Y--ADTIIVGNVI--YEK  224 (234)
T ss_dssp             CSEEEEEC--TT--SCCCHHHHHHHHHHCSSSEEEEESCCCSHHHHHHHHH-H--SSEEEECHHH--HHH
T ss_pred             CCEEEEeC--CC--CcchHHHHHHHHHhCCCCCEEEEecCCCHHHHHHHHh-C--CCEEEEChHH--HhC
Confidence             4556554  35  367999999999988 999999999999999999999 8  9999999999  753

>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A

Probab=98.55  E-value=3e-06  Score=75.87  Aligned_cols=179  Identities=16%  Similarity=0.062  Sum_probs=116.4

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCc-c---cHHHHHHHHH-h--CCCcEEEecCCC-HH-HHHHHHHcCCCEEEeCCee
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADP-L---SKAAAIEALH-A--YPGGLQVGGGIN-SD-NSLSYIEEGATHVIVTSYV  164 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~-~---~~~~i~~~v~-~--~~~pl~vGGGIr-~e-~~~~~l~~Gad~VVigt~~  164 (316)
                      +-.+..+.+.+.|++++|+=-.|+.. +   --..+++.++ .  .+.|+-+.==+. .+ -++.+.++|||.|.+..+.
T Consensus        18 ~l~~~i~~l~~~g~d~~h~DVmDg~Fvpn~~~G~~~v~~ir~~~~~~~~~dvhLmv~~p~~~i~~~~~aGad~itvH~Ea   97 (228)
T 3ovp_A           18 NLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLEA   97 (228)
T ss_dssp             GHHHHHHHHHHTTCSCEEEEEEBSSSSSCBCBCHHHHHHHHHHHCSSSCEEEEEECSCGGGGHHHHHHHTCSEEEEEGGG
T ss_pred             hHHHHHHHHHHcCCCEEEEEecCCCcCcccccCHHHHHHHHHhhCCCCcEEEEEEeCCHHHHHHHHHHcCCCEEEEccCC
Confidence            44567777888999999997777752 1   1233445554 3  357777766675 44 4889999999999998766


Q ss_pred             ecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCC
Q 021156          165 FNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGI  244 (316)
Q Consensus       165 ~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~  244 (316)
                      ..+    +...-+..+.+|. ++.+++...                +.   .+.++.+.+ .++.+++..+......+-+
T Consensus        98 ~~~----~~~~i~~i~~~G~-k~gval~p~----------------t~---~e~l~~~l~-~~D~Vl~msv~pGf~Gq~f  152 (228)
T 3ovp_A           98 TEN----PGALIKDIRENGM-KVGLAIKPG----------------TS---VEYLAPWAN-QIDMALVMTVEPGFGGQKF  152 (228)
T ss_dssp             CSC----HHHHHHHHHHTTC-EEEEEECTT----------------SC---GGGTGGGGG-GCSEEEEESSCTTTCSCCC
T ss_pred             chh----HHHHHHHHHHcCC-CEEEEEcCC----------------CC---HHHHHHHhc-cCCeEEEeeecCCCCCccc
Confidence            554    5444444466663 444444221                11   122333333 3888887777542222223


Q ss_pred             ---CHHHHHHHhhcC-CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHH
Q 021156          245 ---DDELVALLGKYS-PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDV  303 (316)
Q Consensus       245 ---d~eli~~l~~~~-~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~  303 (316)
                         .++.++++++.. +.|+.+.|||+ .+.+..+.++|  ++.+++||++  |..+ ++++.
T Consensus       153 ~~~~l~ki~~lr~~~~~~~I~VdGGI~-~~t~~~~~~aG--Ad~~VvGsaI--f~a~-dp~~~  209 (228)
T 3ovp_A          153 MEDMMPKVHWLRTQFPSLDIEVDGGVG-PDTVHKCAEAG--ANMIVSGSAI--MRSE-DPRSV  209 (228)
T ss_dssp             CGGGHHHHHHHHHHCTTCEEEEESSCS-TTTHHHHHHHT--CCEEEESHHH--HTCS-CHHHH
T ss_pred             CHHHHHHHHHHHHhcCCCCEEEeCCcC-HHHHHHHHHcC--CCEEEEeHHH--hCCC-CHHHH
Confidence               455677777654 68999999995 79999999999  8999999999  7544 34443

>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1

Probab=98.53  E-value=1.3e-07  Score=89.10  Aligned_cols=88  Identities=18%  Similarity=0.205  Sum_probs=70.3

Q ss_pred             CHHHHHHHHHHcCCCEEEEeecC--Cc-----------cccCCC-----CHHHHHHHhhcC--CCcEEEEeCCCCHHHHH
Q 021156          214 YLDERVLDFLASYADEFLVHGVD--VE-----------GKKLGI-----DDELVALLGKYS--PIPVTYAGGVTTMADLE  273 (316)
Q Consensus       214 ~~~e~a~~~~~~Ga~~ilvtdi~--~d-----------G~~~G~-----d~eli~~l~~~~--~iPVIasGGI~s~eDi~  273 (316)
                      +..++++.+++.|++.|.++...  ++           |.+.|+     .++.++++++.+  ++|||++|||++.+|+.
T Consensus       226 ~~~~~a~~l~~~Gvd~i~vsn~~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~i~~i~~~~~~~ipVi~~GGI~~~~da~  305 (336)
T 1f76_A          226 ELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAR  305 (336)
T ss_dssp             HHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHHHTTSSCEEEESSCCSHHHHH
T ss_pred             HHHHHHHHHHHcCCcEEEEeCCcccccccccccccccCCCcCCchhHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHH
Confidence            45788999999999999887542  21           112342     347788888877  89999999999999999


Q ss_pred             HHHHhCCCcCEEEEccchhhcc-CcccHHHHHH
Q 021156          274 KIKVAGIGRVDVTVGSALDIFG-GNLAYKDVVA  305 (316)
Q Consensus       274 ~l~~~G~g~~gVivG~Al~~~~-g~~~~~~~~~  305 (316)
                      +++..|  ++.|.+|+++  .. |++.++++.+
T Consensus       306 ~~l~~G--Ad~V~igr~~--l~~~P~~~~~i~~  334 (336)
T 1f76_A          306 EKIAAG--ASLVQIYSGF--IFKGPPLIKEIVT  334 (336)
T ss_dssp             HHHHHT--CSEEEESHHH--HHHCHHHHHHHHH
T ss_pred             HHHHCC--CCEEEeeHHH--HhcCcHHHHHHHh
Confidence            999998  9999999998  54 8988877754

>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4

Probab=98.53  E-value=5.6e-07  Score=82.67  Aligned_cols=171  Identities=15%  Similarity=0.111  Sum_probs=107.6

Q ss_pred             HHHHHHHHHHcCCCcceEEEec----CCcccH-----------------HHHHHHHH-h-CCCcEEEecCCC------HH
Q 021156           95 AAEFANLYKEDGLTGGHAIMLG----ADPLSK-----------------AAAIEALH-A-YPGGLQVGGGIN------SD  145 (316)
Q Consensus        95 p~e~a~~~~~~G~~~l~lvDLd----a~~~~~-----------------~~i~~~v~-~-~~~pl~vGGGIr------~e  145 (316)
                      -.++++.+.+.|++.+.+=-=-    ++.+..                 ..+++.++ . ..+|+.+=+=.+      .+
T Consensus        36 ~~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~  115 (271)
T 3nav_A           36 SLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICFELIAQIRARNPETPIGLLMYANLVYARGID  115 (271)
T ss_dssp             HHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEEECHHHHHHTCHH
T ss_pred             HHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHhHH
Confidence            4567888888898855442100    111111                 12334444 3 578987643111      23


Q ss_pred             H-HHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHH
Q 021156          146 N-SLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLA  224 (316)
Q Consensus       146 ~-~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~  224 (316)
                      . ++.+.++|+|.+++.....+.    .+.+.+..+++|-+.|.+.-+                    .+..+.++++.+
T Consensus       116 ~f~~~~~~aGvdGvIipDlp~ee----~~~~~~~~~~~gl~~I~lvap--------------------~t~~eri~~i~~  171 (271)
T 3nav_A          116 DFYQRCQKAGVDSVLIADVPTNE----SQPFVAAAEKFGIQPIFIAPP--------------------TASDETLRAVAQ  171 (271)
T ss_dssp             HHHHHHHHHTCCEEEETTSCGGG----CHHHHHHHHHTTCEEEEEECT--------------------TCCHHHHHHHHH
T ss_pred             HHHHHHHHCCCCEEEECCCCHHH----HHHHHHHHHHcCCeEEEEECC--------------------CCCHHHHHHHHH
Confidence            3 888899999999887776664    566777778887433222111                    122467777777


Q ss_pred             cCCCEEEEee-cCCccccCCCC---HHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          225 SYADEFLVHG-VDVEGKKLGID---DELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       225 ~Ga~~ilvtd-i~~dG~~~G~d---~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      .+.+.+.+-+ ....|..++.+   .++++++++.+++|+++++||++++++.+....|  ++|||||+|+
T Consensus       172 ~~~gfiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGfGIst~e~~~~~~~~g--ADgvIVGSAi  240 (271)
T 3nav_A          172 LGKGYTYLLSRAGVTGAETKANMPVHALLERLQQFDAPPALLGFGISEPAQVKQAIEAG--AAGAISGSAV  240 (271)
T ss_dssp             HCCSCEEECCCC--------CCHHHHHHHHHHHHTTCCCEEECSSCCSHHHHHHHHHTT--CSEEEESHHH
T ss_pred             HCCCeEEEEeccCCCCcccCCchhHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcC--CCEEEECHHH
Confidence            7666543322 23345544443   3578888888899999999999999999888888  9999999999

>1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A*

Probab=98.51  E-value=2.4e-07  Score=88.95  Aligned_cols=149  Identities=13%  Similarity=-0.015  Sum_probs=98.4

Q ss_pred             HHHHHHHHcCCCEEEeCCee--------------ecC---C------CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeE
Q 021156          145 DNSLSYIEEGATHVIVTSYV--------------FNN---G------QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYA  201 (316)
Q Consensus       145 e~~~~~l~~Gad~VVigt~~--------------~~~---~------~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~  201 (316)
                      +.++++.++|+|-|=|...-              +.|   |      ++..+.++.+.+.+|++.|.  +.+.  -..+ 
T Consensus       171 ~AA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~V~--vrls--~~~~-  245 (376)
T 1icp_A          171 VAARNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSDRVG--IRIS--PFAH-  245 (376)
T ss_dssp             HHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEE--EEEC--TTCC-
T ss_pred             HHHHHHHHcCCCEEEEcCccchhhhhccCCcccCCCCccCccHHHhHHHHHHHHHHHHHHhcCCceE--EEec--cccc-
Confidence            34667788999998875431              111   1      12346677777778755433  3332  1100 


Q ss_pred             EEeCCcce-ecccCHHHHHHHHHHcCCCEEEEeecCCccccCC-CCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhC
Q 021156          202 IVTDRWQK-FSDVYLDERVLDFLASYADEFLVHGVDVEGKKLG-IDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAG  279 (316)
Q Consensus       202 v~~~gw~~-~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G-~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G  279 (316)
                        ..|+.. .+..+..++++.+++.|++.+-++....+....+ .+++.++++++.+++||+++||+ +.+++.++++.|
T Consensus       246 --~~g~~~~~~~~~~~~la~~le~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~vr~~~~iPvi~~G~i-~~~~a~~~l~~g  322 (376)
T 1icp_A          246 --YNEAGDTNPTALGLYMVESLNKYDLAYCHVVEPRMKTAWEKIECTESLVPMRKAYKGTFIVAGGY-DREDGNRALIED  322 (376)
T ss_dssp             --TTTCCCSCHHHHHHHHHHHHGGGCCSEEEEECCSCCC------CCCCSHHHHHHCCSCEEEESSC-CHHHHHHHHHTT
T ss_pred             --cCCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCcccCCCCccccHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHCC
Confidence              011111 1111357889999999999887776433221112 25567788888889999999999 899999999998


Q ss_pred             CCcCEEEEccchhhccCcccHHHHH
Q 021156          280 IGRVDVTVGSALDIFGGNLAYKDVV  304 (316)
Q Consensus       280 ~g~~gVivG~Al~~~~g~~~~~~~~  304 (316)
                       +++.|++||++  +.+|+.++++.
T Consensus       323 -~aD~V~~gR~~--l~~P~l~~k~~  344 (376)
T 1icp_A          323 -RADLVAYGRLF--ISNPDLPKRFE  344 (376)
T ss_dssp             -SCSEEEESHHH--HHCTTHHHHHH
T ss_pred             -CCcEEeecHHH--HhCccHHHHHH
Confidence             59999999999  99998877765

>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...

Probab=98.51  E-value=5e-06  Score=75.31  Aligned_cols=179  Identities=16%  Similarity=0.089  Sum_probs=118.1

Q ss_pred             cCHHHHHHHHHHcCCCcceEEE-ecCCcccHHHHHHHHHhCCCcEEEecCC-CHHHHHHHHHcCCCEEEeCCeeecCCCC
Q 021156           93 KSAAEFANLYKEDGLTGGHAIM-LGADPLSKAAAIEALHAYPGGLQVGGGI-NSDNSLSYIEEGATHVIVTSYVFNNGQM  170 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvD-Lda~~~~~~~i~~~v~~~~~pl~vGGGI-r~e~~~~~l~~Gad~VVigt~~~~~~~~  170 (316)
                      .||.++|+.| ++|+..+-+.- =+-=......+.++.+.+++|+.-===| ..-++.+...+|||.|.+=.+.+.+.+ 
T Consensus        64 ~dp~~iA~~~-~~GA~aiSVLTd~~~F~Gs~~~L~~vr~~v~lPvLrKDFiid~yQI~eAr~~GADaILLI~a~L~~~~-  141 (258)
T 4a29_A           64 RDPIEYAKFM-ERYAVGLSITTEEKYFNGSYETLRKIASSVSIPILMSDFIVKESQIDDAYNLGADTVLLIVKILTERE-  141 (258)
T ss_dssp             CCHHHHHHHH-TTTCSEEEEECCSTTTCCCHHHHHHHHTTCSSCEEEESCCCSHHHHHHHHHHTCSEEEEEGGGSCHHH-
T ss_pred             CCHHHHHHHH-hCCCeEEEEeCCCCCCCCCHHHHHHHHHhcCCCEeeccccccHHHHHHHHHcCCCeeehHHhhcCHHH-
Confidence            4799999866 57877544321 1100233444444444688998543222 246788888999999987666665300 


Q ss_pred             CHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHH
Q 021156          171 DLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVA  250 (316)
Q Consensus       171 ~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~  250 (316)
                       ...+.+.+..+|       +|+-       |-++         ..+.+++..+.|++-|-++.++.. | -..|++...
T Consensus       142 -l~~l~~~A~~lG-------l~~L-------vEVh---------~~~El~rAl~~~a~iIGINNRnL~-t-f~vdl~~t~  195 (258)
T 4a29_A          142 -LESLLEYARSYG-------MEPL-------ILIN---------DENDLDIALRIGARFIGIMSRDFE-T-GEINKENQR  195 (258)
T ss_dssp             -HHHHHHHHHHTT-------CCCE-------EEES---------SHHHHHHHHHTTCSEEEECSBCTT-T-CCBCHHHHH
T ss_pred             -HHHHHHHHHHHh-------HHHH-------Hhcc---------hHHHHHHHhcCCCcEEEEeCCCcc-c-cccCHHHHH
Confidence             223344455566       3331       2111         134566777899998888887764 2 235888888


Q ss_pred             HHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHH
Q 021156          251 LLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDV  303 (316)
Q Consensus       251 ~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~  303 (316)
                      ++....  ++.+++.+||.+.+|+.++.+.|  +++++||.++  +..+=..+++
T Consensus       196 ~L~~~ip~~~~~VsESGI~t~~dv~~l~~~G--~~a~LVGeal--mr~~d~~~~L  246 (258)
T 4a29_A          196 KLISMIPSNVVKVAKLGISERNEIEELRKLG--VNAFLISSSL--MRNPEKIKEL  246 (258)
T ss_dssp             HHHTTSCTTSEEEEEESSCCHHHHHHHHHTT--CCEEEECHHH--HHCTTHHHHH
T ss_pred             HHHhhCCCCCEEEEcCCCCCHHHHHHHHHCC--CCEEEECHHH--hCCCcHHHHH
Confidence            888754  57889999999999999999998  9999999999  8765334443

>2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A*

Probab=98.51  E-value=4.8e-07  Score=87.60  Aligned_cols=149  Identities=13%  Similarity=-0.010  Sum_probs=100.8

Q ss_pred             HHHHHHHHcCCCEEEeCCe----------e----ecC---C------CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeE
Q 021156          145 DNSLSYIEEGATHVIVTSY----------V----FNN---G------QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYA  201 (316)
Q Consensus       145 e~~~~~l~~Gad~VVigt~----------~----~~~---~------~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~  201 (316)
                      +.++++.++|+|-|=|..+          .    +.|   |      ++..|.++.+.+.+|++.|.+-+...  +  + 
T Consensus       175 ~AA~~a~~AGfDgVEIh~ahGYLl~QFLsp~~N~RtD~yGGslenR~rf~~Eiv~aVr~avg~~~V~vRls~~--~--~-  249 (402)
T 2hsa_B          175 RSALNAIEAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSLANRCKFITQVVQAVVSAIGADRVGVRVSPA--I--D-  249 (402)
T ss_dssp             HHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECSS--C--C-
T ss_pred             HHHHHHHHcCCCEEEECCccchHHHhccCCccCccCCccCcChhhhhHHHHHHHHHHHHHhCCCcEEEEeccc--c--c-
Confidence            3466777899999988653          1    111   1      12346677777778755433322211  0  0 


Q ss_pred             EEeCCcce-ecccCHHHHHHHHHHcC------CCEEEEeecCCcccc-C-------C-CCHHHHHHHhhcCCCcEEEEeC
Q 021156          202 IVTDRWQK-FSDVYLDERVLDFLASY------ADEFLVHGVDVEGKK-L-------G-IDDELVALLGKYSPIPVTYAGG  265 (316)
Q Consensus       202 v~~~gw~~-~~~~~~~e~a~~~~~~G------a~~ilvtdi~~dG~~-~-------G-~d~eli~~l~~~~~iPVIasGG  265 (316)
                        ..+... .+..+..++++.+++.|      ++.+-++....++.. .       + .+++.++++++.+++|||++||
T Consensus       250 --~~g~~~~~~~~~~~~la~~le~~G~~gg~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vk~~~~iPvi~~G~  327 (402)
T 2hsa_B          250 --HLDAMDSNPLSLGLAVVERLNKIQLHSGSKLAYLHVTQPRYVAYGQTEAGRLGSEEEEARLMRTLRNAYQGTFICSGG  327 (402)
T ss_dssp             --STTCCCSCHHHHHHHHHHHHHHHHHHHTSCCSEEEEECCCCCTTTTSSSTTTTHHHHHHHHHHHHHHHCSSCEEEESS
T ss_pred             --cCCCCCCCCHHHHHHHHHHHHhcCCccCCceEEEEEecCccccccCCccccccCCcchHHHHHHHHHHCCCCEEEeCC
Confidence              001011 01113678899999999      998877765444311 1       2 1577888999989999999999


Q ss_pred             CCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHH
Q 021156          266 VTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVV  304 (316)
Q Consensus       266 I~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~  304 (316)
                      + +.+++.++++.| +++.|++||++  +.+|..++++.
T Consensus       328 i-~~~~a~~~l~~g-~aD~V~igR~~--l~dP~l~~k~~  362 (402)
T 2hsa_B          328 Y-TRELGIEAVAQG-DADLVSYGRLF--ISNPDLVMRIK  362 (402)
T ss_dssp             C-CHHHHHHHHHTT-SCSEEEESHHH--HHCTTHHHHHH
T ss_pred             C-CHHHHHHHHHCC-CCceeeecHHH--HhCchHHHHHH
Confidence            9 999999999998 59999999999  99998877764

>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}

Probab=98.51  E-value=1.7e-06  Score=78.42  Aligned_cols=181  Identities=19%  Similarity=0.235  Sum_probs=119.5

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCc-cc---HHHHHHHHH-hC-CCcEEEecCCC-HH-HHHHHHHcCCCEEEeCCeee
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADP-LS---KAAAIEALH-AY-PGGLQVGGGIN-SD-NSLSYIEEGATHVIVTSYVF  165 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~-~~---~~~i~~~v~-~~-~~pl~vGGGIr-~e-~~~~~l~~Gad~VVigt~~~  165 (316)
                      +-.+..+.+.++|++++|+=-.|+.. +|   -..+++.++ .. +.|+-+-==+. .+ -++.+.++|||.+.+..+..
T Consensus        41 ~L~~~i~~l~~~G~d~lHvDVmDg~FVpnit~G~~~v~~lr~~~p~~~ldvHLmv~~p~~~i~~~~~aGAd~itvH~Ea~  120 (246)
T 3inp_A           41 RLGDDVKAVLAAGADNIHFDVMDNHYVPNLTFGPMVLKALRDYGITAGMDVHLMVKPVDALIESFAKAGATSIVFHPEAS  120 (246)
T ss_dssp             GHHHHHHHHHHTTCCCEEEEEEBSSSSSCBCCCHHHHHHHHHHTCCSCEEEEEECSSCHHHHHHHHHHTCSEEEECGGGC
T ss_pred             hHHHHHHHHHHcCCCEEEEEecCCCcCcchhcCHHHHHHHHHhCCCCeEEEEEeeCCHHHHHHHHHHcCCCEEEEccccc
Confidence            45567778888999999998888752 11   233445555 45 67877766675 44 48888999999999998776


Q ss_pred             cCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCc--cccCC
Q 021156          166 NNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVE--GKKLG  243 (316)
Q Consensus       166 ~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~d--G~~~G  243 (316)
                      .+    +...-+..+++|. ++.+++..    +            +   +.+.++.+.+ .++.+++..+...  |..-.
T Consensus       121 ~~----~~~~i~~ir~~G~-k~Gvalnp----~------------T---p~e~l~~~l~-~vD~VlvMsV~PGfgGQ~fi  175 (246)
T 3inp_A          121 EH----IDRSLQLIKSFGI-QAGLALNP----A------------T---GIDCLKYVES-NIDRVLIMSVNPGFGGQKFI  175 (246)
T ss_dssp             SC----HHHHHHHHHTTTS-EEEEEECT----T------------C---CSGGGTTTGG-GCSEEEEECSCTTC--CCCC
T ss_pred             hh----HHHHHHHHHHcCC-eEEEEecC----C------------C---CHHHHHHHHh-cCCEEEEeeecCCCCCcccc
Confidence            65    6555555577763 44444422    1            1   1123333333 5888888777542  22112


Q ss_pred             C-CHHHHHHHhhc-----CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156          244 I-DDELVALLGKY-----SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVA  305 (316)
Q Consensus       244 ~-d~eli~~l~~~-----~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~  305 (316)
                      + .++.++++++.     .++++.+-|||+ .+.+.++.++|  ++.+++|||+  |..+ ++++..+
T Consensus       176 ~~~l~KI~~lr~~~~~~~~~~~I~VDGGI~-~~ti~~~~~aG--AD~~V~GSaI--f~a~-dp~~~i~  237 (246)
T 3inp_A          176 PAMLDKAKEISKWISSTDRDILLEIDGGVN-PYNIAEIAVCG--VNAFVAGSAI--FNSD-SYKQTID  237 (246)
T ss_dssp             TTHHHHHHHHHHHHHHHTSCCEEEEESSCC-TTTHHHHHTTT--CCEEEESHHH--HTSS-CHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCCCeeEEEECCcC-HHHHHHHHHcC--CCEEEEehHH--hCCC-CHHHHHH
Confidence            3 45667776653     358999999999 58899999998  8999999999  7544 4444443

>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A

Probab=98.50  E-value=1.8e-06  Score=84.53  Aligned_cols=172  Identities=16%  Similarity=0.050  Sum_probs=119.3

Q ss_pred             ccCHHHHHHHHHHcCCCcceEE-EecCCcccHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCC
Q 021156           92 DKSAAEFANLYKEDGLTGGHAI-MLGADPLSKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQ  169 (316)
Q Consensus        92 ~~~p~e~a~~~~~~G~~~l~lv-DLda~~~~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~  169 (316)
                      +-+|.++|+.|.+. +..+-+. |=+-=......+..+.+.+++|+.-=-=|- .-++.++..+|||.|.+-.+.+.   
T Consensus        67 ~~~~~~iA~~y~~~-A~~IsvLTd~~~F~gs~~dL~~vr~~v~lPvLrKDFI~d~~Qi~ea~~~GAD~ILLi~a~l~---  142 (452)
T 1pii_A           67 DFDPARIAAIYKHY-ASAISVLTDEKYFQGSFNFLPIVSQIAPQPILCKDFIIDPYQIYLARYYQADACLLMLSVLD---  142 (452)
T ss_dssp             SCCHHHHHHHHTTT-CSEEEEECCSTTTCCCTTHHHHHHHHCCSCEEEESCCCSHHHHHHHHHTTCSEEEEETTTCC---
T ss_pred             CCCHHHHHHHHHhh-CcEEEEEecccccCCCHHHHHHHHHhcCCCeEEEeccCCHHHHHHHHHcCCCEEEEEcccCC---
Confidence            34899999999887 8766553 111001233334344346788986443333 46788899999999999888766   


Q ss_pred             CCHHHHHHHH---HHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCH
Q 021156          170 MDLERLKDLV---RVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDD  246 (316)
Q Consensus       170 ~~~eli~ei~---~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~  246 (316)
                        .+.++++.   +.+|   .-+-+++.                    ..+.+.++.++|++-|-++.++...  ..+|+
T Consensus       143 --~~~l~~l~~~a~~lg---m~~LvEvh--------------------~~eE~~~A~~lga~iIGinnr~L~t--~~~dl  195 (452)
T 1pii_A          143 --DDQYRQLAAVAHSLE---MGVLTEVS--------------------NEEEQERAIALGAKVVGINNRDLRD--LSIDL  195 (452)
T ss_dssp             --HHHHHHHHHHHHHTT---CEEEEEEC--------------------SHHHHHHHHHTTCSEEEEESEETTT--TEECT
T ss_pred             --HHHHHHHHHHHHHcC---CeEEEEeC--------------------CHHHHHHHHHCCCCEEEEeCCCCCC--CCCCH
Confidence              34444444   3344   22334442                    2356778888999988888877643  35689


Q ss_pred             HHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCccc
Q 021156          247 ELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLA  299 (316)
Q Consensus       247 eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~  299 (316)
                      +...++.+..  ++++|+.|||.+++|+.++.+.   +++|+||+++  ....-.
T Consensus       196 ~~~~~L~~~ip~~~~vIaEsGI~t~edv~~~~~~---a~avLVGeal--mr~~d~  245 (452)
T 1pii_A          196 NRTRELAPKLGHNVTVISESGINTYAQVRELSHF---ANGFLIGSAL--MAHDDL  245 (452)
T ss_dssp             HHHHHHHHHHCTTSEEEEESCCCCHHHHHHHTTT---CSEEEECHHH--HTCSCH
T ss_pred             HHHHHHHHhCCCCCeEEEECCCCCHHHHHHHHHh---CCEEEEcHHH--cCCcCH
Confidence            9888887654  6799999999999999999987   5999999999  765533

>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*

Probab=98.50  E-value=1.9e-06  Score=79.16  Aligned_cols=138  Identities=21%  Similarity=0.185  Sum_probs=84.7

Q ss_pred             HHHHH-hCCCcEEEec--C-C-C--H-HHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecC
Q 021156          126 IEALH-AYPGGLQVGG--G-I-N--S-DNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKD  197 (316)
Q Consensus       126 ~~~v~-~~~~pl~vGG--G-I-r--~-e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~  197 (316)
                      ++.++ ..++|+.+=+  . + +  . ..++.+.++|+|-+++.....+.    .+.+.+..+++|-+.|.+.-+     
T Consensus        83 v~~ir~~~~~Pii~m~y~n~v~~~g~~~f~~~~~~aG~dGviv~Dl~~ee----~~~~~~~~~~~gl~~i~liap-----  153 (271)
T 1ujp_A           83 VREVRALTEKPLFLMTYLNPVLAWGPERFFGLFKQAGATGVILPDLPPDE----DPGLVRLAQEIGLETVFLLAP-----  153 (271)
T ss_dssp             HHHHHHHCCSCEEEECCHHHHHHHCHHHHHHHHHHHTCCEEECTTCCGGG----CHHHHHHHHHHTCEEECEECT-----
T ss_pred             HHHHHhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEecCCCHHH----HHHHHHHHHHcCCceEEEeCC-----
Confidence            34444 4678887732  1 2 1  2 34788899999987776665543    344445556666322211101     


Q ss_pred             CeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecC-CccccC---CCCHHHHHHHhhcCCCcEEEEeCCCCHHHHH
Q 021156          198 GKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVD-VEGKKL---GIDDELVALLGKYSPIPVTYAGGVTTMADLE  273 (316)
Q Consensus       198 g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~-~dG~~~---G~d~eli~~l~~~~~iPVIasGGI~s~eDi~  273 (316)
                                     .+..+.++.......+.+.+..+. -.|..+   ....++++++++.+++||+++|||++++++.
T Consensus       154 ---------------~s~~eri~~ia~~~~gfiy~vs~~G~TG~~~~~~~~~~~~v~~vr~~~~~Pv~vGfGI~t~e~a~  218 (271)
T 1ujp_A          154 ---------------TSTDARIATVVRHATGFVYAVSVTGVTGMRERLPEEVKDLVRRIKARTALPVAVGFGVSGKATAA  218 (271)
T ss_dssp             ---------------TCCHHHHHHHHTTCCSCEEEECC------------CCHHHHHHHHTTCCSCEEEESCCCSHHHHH
T ss_pred             ---------------CCCHHHHHHHHHhCCCCEEEEecCcccCCCCCCCccHHHHHHHHHhhcCCCEEEEcCCCCHHHHH
Confidence                           012355566666655544322111 112222   2356899999998899999999999999999


Q ss_pred             HHHHhCCCcCEEEEccch
Q 021156          274 KIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       274 ~l~~~G~g~~gVivG~Al  291 (316)
                      ++  .+  +++||||+|+
T Consensus       219 ~~--~~--ADgVIVGSAi  232 (271)
T 1ujp_A          219 QA--AV--ADGVVVGSAL  232 (271)
T ss_dssp             HH--TT--SSEEEECHHH
T ss_pred             Hh--cC--CCEEEEChHH
Confidence            97  66  9999999999

>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A

Probab=98.50  E-value=5.5e-06  Score=72.98  Aligned_cols=169  Identities=17%  Similarity=0.141  Sum_probs=114.1

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHhCCCcEEEecCCC--HHHHHHHHHcCCCEEEeCCeeecCCCC
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAYPGGLQVGGGIN--SDNSLSYIEEGATHVIVTSYVFNNGQM  170 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~~~pl~vGGGIr--~e~~~~~l~~Gad~VVigt~~~~~~~~  170 (316)
                      .+.+++++...+.|++.+.+-.   ...+..+.++.+++  -.+.+|.|.-  .++++.++++||+.|+.+.   .+   
T Consensus        25 ~~~~~~~~~l~~gGv~~iel~~---k~~~~~~~i~~~~~--~~~~~gag~vl~~d~~~~A~~~GAd~v~~~~---~d---   93 (207)
T 2yw3_A           25 EDLLGLARVLEEEGVGALEITL---RTEKGLEALKALRK--SGLLLGAGTVRSPKEAEAALEAGAAFLVSPG---LL---   93 (207)
T ss_dssp             CCHHHHHHHHHHTTCCEEEEEC---SSTHHHHHHHHHTT--SSCEEEEESCCSHHHHHHHHHHTCSEEEESS---CC---
T ss_pred             HHHHHHHHHHHHcCCCEEEEeC---CChHHHHHHHHHhC--CCCEEEeCeEeeHHHHHHHHHcCCCEEEcCC---CC---
Confidence            3577899999888877665542   22334455566655  3455666664  4889999999999998774   22   


Q ss_pred             CHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHH
Q 021156          171 DLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVA  250 (316)
Q Consensus       171 ~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~  250 (316)
                       ++.++.. +.+|.. +++.  +.                   ++ +.+.+..+.|++.+-++.-.   ...|  .+.++
T Consensus        94 -~~v~~~~-~~~g~~-~i~G--~~-------------------t~-~e~~~A~~~Gad~v~~fpa~---~~gG--~~~lk  143 (207)
T 2yw3_A           94 -EEVAALA-QARGVP-YLPG--VL-------------------TP-TEVERALALGLSALKFFPAE---PFQG--VRVLR  143 (207)
T ss_dssp             -HHHHHHH-HHHTCC-EEEE--EC-------------------SH-HHHHHHHHTTCCEEEETTTT---TTTH--HHHHH
T ss_pred             -HHHHHHH-HHhCCC-EEec--CC-------------------CH-HHHHHHHHCCCCEEEEecCc---cccC--HHHHH
Confidence             5555444 457633 2233  21                   22 44567778899988775411   1112  57788


Q ss_pred             HHhhcC-CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHHh
Q 021156          251 LLGKYS-PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       251 ~l~~~~-~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~~  309 (316)
                      .++... ++|+++.|||. .+++.++++.|  +++|.+|+++  +.+  +++++.+.+++
T Consensus       144 ~l~~~~~~ipvvaiGGI~-~~n~~~~l~aG--a~~vavgSai--~~~--d~~~i~~~a~~  196 (207)
T 2yw3_A          144 AYAEVFPEVRFLPTGGIK-EEHLPHYAALP--NLLAVGGSWL--LQG--NLEAVRAKVRA  196 (207)
T ss_dssp             HHHHHCTTCEEEEBSSCC-GGGHHHHHTCS--SBSCEEESGG--GSS--CHHHHHHHHHH
T ss_pred             HHHhhCCCCcEEEeCCCC-HHHHHHHHhCC--CcEEEEehhh--hCC--CHHHHHHHHHH
Confidence            888766 89999999998 69999999998  8999999999  753  44445444433

>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A

Probab=98.49  E-value=2e-06  Score=75.00  Aligned_cols=158  Identities=18%  Similarity=0.178  Sum_probs=104.4

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHh-CCCcEEEecCC-C-HHHHHHHHHcCCCEEEeCCeeecCCC
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHA-YPGGLQVGGGI-N-SDNSLSYIEEGATHVIVTSYVFNNGQ  169 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~-~~~pl~vGGGI-r-~e~~~~~l~~Gad~VVigt~~~~~~~  169 (316)
                      .+..++++.+.+.|++.+.+ .+..  +.....++.+++ .+-.+.+|.|. . .++++.+.++|||.+ ++..+ .   
T Consensus        22 ~~~~~~~~~~~~~G~~~iev-~~~~--~~~~~~i~~ir~~~~~~~~ig~~~v~~~~~~~~a~~~Gad~i-v~~~~-~---   93 (205)
T 1wa3_A           22 EEAKEKALAVFEGGVHLIEI-TFTV--PDADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVESGAEFI-VSPHL-D---   93 (205)
T ss_dssp             HHHHHHHHHHHHTTCCEEEE-ETTS--TTHHHHHHHTHHHHHTTCEEEEESCCSHHHHHHHHHHTCSEE-ECSSC-C---
T ss_pred             HHHHHHHHHHHHCCCCEEEE-eCCC--hhHHHHHHHHHHHCCCCcEEEecccCCHHHHHHHHHcCCCEE-EcCCC-C---
Confidence            35678888898888886643 2222  233333444443 22124566544 4 688999999999999 55432 2   


Q ss_pred             CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHH
Q 021156          170 MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELV  249 (316)
Q Consensus       170 ~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli  249 (316)
                        ++.++ ..+.+|- .+++  ++.                   +. +.+....+.|++.+-++....      ...+.+
T Consensus        94 --~~~~~-~~~~~g~-~vi~--g~~-------------------t~-~e~~~a~~~Gad~vk~~~~~~------~g~~~~  141 (205)
T 1wa3_A           94 --EEISQ-FCKEKGV-FYMP--GVM-------------------TP-TELVKAMKLGHTILKLFPGEV------VGPQFV  141 (205)
T ss_dssp             --HHHHH-HHHHHTC-EEEC--EEC-------------------SH-HHHHHHHHTTCCEEEETTHHH------HHHHHH
T ss_pred             --HHHHH-HHHHcCC-cEEC--CcC-------------------CH-HHHHHHHHcCCCEEEEcCccc------cCHHHH
Confidence              55554 4455652 2222  221                   12 346677899999775543211      135788


Q ss_pred             HHHhhcC-CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhcc
Q 021156          250 ALLGKYS-PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFG  295 (316)
Q Consensus       250 ~~l~~~~-~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~  295 (316)
                      +++.+.. ++|+++.|||. .+++.++++.|  +++|++|+++  +.
T Consensus       142 ~~l~~~~~~~pvia~GGI~-~~~~~~~~~~G--a~~v~vGs~i--~~  183 (205)
T 1wa3_A          142 KAMKGPFPNVKFVPTGGVN-LDNVCEWFKAG--VLAVGVGSAL--VK  183 (205)
T ss_dssp             HHHHTTCTTCEEEEBSSCC-TTTHHHHHHHT--CSCEEECHHH--HC
T ss_pred             HHHHHhCCCCcEEEcCCCC-HHHHHHHHHCC--CCEEEECccc--cC
Confidence            8888776 89999999997 78999999999  9999999999  65

>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A

Probab=98.49  E-value=1.1e-06  Score=78.88  Aligned_cols=172  Identities=13%  Similarity=0.171  Sum_probs=104.4

Q ss_pred             HHHHHHHHcCCCcceEEEecCCc----ccHHHHHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCH
Q 021156           97 EFANLYKEDGLTGGHAIMLGADP----LSKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDL  172 (316)
Q Consensus        97 e~a~~~~~~G~~~l~lvDLda~~----~~~~~i~~~v~~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~  172 (316)
                      +.++...+.|.+   .+-+.+..    .+-..+.+.+++.++|+..=-+ +.+.+    ..|||.+++=+..-.+   ++
T Consensus        27 ~~l~~~~~~GtD---aI~vGgs~gvt~~~~~~~v~~ik~~~~Piil~p~-~~~~~----~~gaD~il~pslln~~---~~   95 (235)
T 3w01_A           27 DDLDAICMSQTD---AIMIGGTDDVTEDNVIHLMSKIRRYPLPLVLEIS-NIESV----MPGFDFYFVPTVLNST---DV   95 (235)
T ss_dssp             HHHHHHHTSSCS---EEEECCSSCCCHHHHHHHHHHHTTSCSCEEEECC-CSTTC----CTTCSEEEEEEETTBS---SG
T ss_pred             HHHHHHHHcCCC---EEEECCcCCcCHHHHHHHHHHhcCcCCCEEEecC-CHHHh----hcCCCEEEEccccCCC---Cc
Confidence            455556677877   34444432    2344455666667888855444 23332    4599998886655443   36


Q ss_pred             HHH----HHHHHHhcC----ceEEEeeeeeecCCeeEEEeCCcc------eecccCHHHHHHHH---HHc-CCCEEEEee
Q 021156          173 ERL----KDLVRVVGK----QRLVLDLSCRKKDGKYAIVTDRWQ------KFSDVYLDERVLDF---LAS-YADEFLVHG  234 (316)
Q Consensus       173 eli----~ei~~~~G~----~~IvvslD~k~~~g~~~v~~~gw~------~~~~~~~~e~a~~~---~~~-Ga~~ilvtd  234 (316)
                      +++    .+..+++|-    +.+++.-        |.+.-.+..      .....++.+.+...   .+. |.. ++|+.
T Consensus        96 ~~i~g~~~~a~~~~gl~~~~~e~i~~g--------Yivv~p~s~v~~v~~a~~~~~~e~iaa~A~~a~~~~g~~-~vY~e  166 (235)
T 3w01_A           96 AFHNGTLLEALKTYGHSIDFEEVIFEG--------YVVCNADSKVAKHTKANTDLTTEDLEAYAQMVNHMYRLP-VMYIE  166 (235)
T ss_dssp             GGTTHHHHHHHHHHGGGCCGGGEEEEE--------EEECCSSSHHHHHTTBCCCCCHHHHHHHHHHHHHTTCCS-EEEEE
T ss_pred             chhhhHHHHHHHHcCCCCcccceeeee--------EEEECCCCChhhcccCCcCCCHHHHHHHHHHHHHHcCCC-EEEEe
Confidence            664    345677873    1333321        111111110      01112344444332   222 444 45554


Q ss_pred             cCCccccCCCCHHHHHHHhhcC-CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCc
Q 021156          235 VDVEGKKLGIDDELVALLGKYS-PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGN  297 (316)
Q Consensus       235 i~~dG~~~G~d~eli~~l~~~~-~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~  297 (316)
                      -  .|+ .| +.++++++++.+ ++|++++|||+++++++++.+ |  +++||||+|+  ++++
T Consensus       167 ~--sG~-~g-~~~~v~~ir~~~~~~pv~vGfGI~~~e~a~~~~~-g--AD~VVVGSai--~~~~  221 (235)
T 3w01_A          167 Y--SGI-YG-DVSKVQAVSEHLTETQLFYGGGISSEQQATEMAA-I--ADTIIVGDII--YKDI  221 (235)
T ss_dssp             C--TTS-CC-CHHHHHHHHTTCSSSEEEEESCCCSHHHHHHHHT-T--SSEEEECTHH--HHCH
T ss_pred             c--CCC-cC-CHHHHHHHHHhcCCCCEEEECCcCCHHHHHHHHc-C--CCEEEECCce--ecCH
Confidence            3  466 33 899999999988 899999999999999999887 7  9999999999  8753

>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A

Probab=98.46  E-value=2.4e-07  Score=93.28  Aligned_cols=103  Identities=18%  Similarity=0.174  Sum_probs=78.0

Q ss_pred             ceEEEeeeeeec-CCeeEEEeCCcc------------eecccCHHHHHHHHHHcCCCEEEEeecCCcccc-----CCCCH
Q 021156          185 QRLVLDLSCRKK-DGKYAIVTDRWQ------------KFSDVYLDERVLDFLASYADEFLVHGVDVEGKK-----LGIDD  246 (316)
Q Consensus       185 ~~IvvslD~k~~-~g~~~v~~~gw~------------~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~-----~G~d~  246 (316)
                      .+|+++||++.. +|+ .|.++|-+            ...+ ++.++|+.+.+.|++++.+.|++.  ..     ++.+.
T Consensus       241 ~~iip~iD~~~g~~g~-~V~~kg~~~~vr~~~g~~~~~~~~-dp~~~A~~~~~~Ga~~l~~~dl~~--~~~~~~~~~~~~  316 (555)
T 1jvn_A          241 RRIIACLDVRTNDQGD-LVVTKGDQYDVREKSDGKGVRNLG-KPVQLAQKYYQQGADEVTFLNITS--FRDCPLKDTPML  316 (555)
T ss_dssp             CCEEEEEEEEECTTSC-EESSTTC---------------CH-HHHHHHHHHHHTTCSEEEEEEEC-----CCCGGGCHHH
T ss_pred             EEEEEEEEEecCCCCc-EEEeccceeeEEecccccCceEcC-CHHHHHHHHHHcCCCEEEEEeCCc--cccccCCCchHH
Confidence            479999999832 232 33112211            1112 789999999999999998888874  43     33468


Q ss_pred             HHHHHHhhcCCCcEEEEeCCCCH-----------HHHHHHHHhCCCcCEEEEccchhhcc
Q 021156          247 ELVALLGKYSPIPVTYAGGVTTM-----------ADLEKIKVAGIGRVDVTVGSALDIFG  295 (316)
Q Consensus       247 eli~~l~~~~~iPVIasGGI~s~-----------eDi~~l~~~G~g~~gVivG~Al~~~~  295 (316)
                      +.++++++.+++||+++|||++.           +++.++++.|  ++.|+||++.  +.
T Consensus       317 ~~i~~i~~~~~ipi~vgGGIr~~~d~~~~~~~~~~~a~~~l~aG--ad~V~igt~~--~~  372 (555)
T 1jvn_A          317 EVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYFRSG--ADKVSIGTDA--VY  372 (555)
T ss_dssp             HHHHHHTTTCCSCEEEESSCSCEECTTCCEECHHHHHHHHHHHT--CSEEEECHHH--HH
T ss_pred             HHHHHHHhhCCCcEEEeCccccchhcccccchHHHHHHHHHHcC--CCEEEECCHH--hh
Confidence            89999998899999999999998           4499999999  9999999999  65

>3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0

Probab=98.46  E-value=1.3e-06  Score=83.50  Aligned_cols=142  Identities=13%  Similarity=0.023  Sum_probs=97.1

Q ss_pred             HHHHHHHcCCCEEEeCCee--------------ecC---C------CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEE
Q 021156          146 NSLSYIEEGATHVIVTSYV--------------FNN---G------QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAI  202 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~~--------------~~~---~------~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v  202 (316)
                      .++++.++|+|-|=|..+-              ++|   |      ++..|.++.+.+.+|++.|.+-+...  +.    
T Consensus       166 AA~~A~~aGfDgVEih~a~GYLl~QFLsp~~N~RtD~yGGslenR~rf~~evv~aVr~~vg~~~v~vRls~~--~~----  239 (361)
T 3gka_A          166 GAENARAAGFDGVEVHGANGYLLDQFLQDSANRRTDAYGGSIENRARLLLEVVDAAIDVWSAARVGVHLAPR--GD----  239 (361)
T ss_dssp             HHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHSHHHHHHHHHHHHHHCGGGEEEEECTT--CC----
T ss_pred             HHHHHHHcCCCEEEECCcCccHHHhccCcccccccCCCCCChhhcHHHHHHHHHHHHHHcCCCeEEEecccc--cc----
Confidence            3566778999999886542              111   1      23357777787888765443333221  00    


Q ss_pred             EeCCccee-cccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCC
Q 021156          203 VTDRWQKF-SDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIG  281 (316)
Q Consensus       203 ~~~gw~~~-~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g  281 (316)
                       ..++... ...+..++++.+++.|++.+-++...     .|+  +.++.+++.+++|||++||+ +.+++.++++.| +
T Consensus       240 -~~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~-----~~~--~~~~~ik~~~~iPvi~~Ggi-t~e~a~~~l~~G-~  309 (361)
T 3gka_A          240 -AHTMGDSDPAATFGHVARELGRRRIAFLFARESF-----GGD--AIGQQLKAAFGGPFIVNENF-TLDSAQAALDAG-Q  309 (361)
T ss_dssp             -SSSCCCSCHHHHHHHHHHHHHHTTCSEEEEECCC-----STT--CCHHHHHHHHCSCEEEESSC-CHHHHHHHHHTT-S
T ss_pred             -cCCCCCCCcHHHHHHHHHHHHHcCCCEEEECCCC-----CCH--HHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHcC-C
Confidence             0121110 11135678999999999988766543     233  45777887788999999999 999999999998 5


Q ss_pred             cCEEEEccchhhccCcccHHHHHH
Q 021156          282 RVDVTVGSALDIFGGNLAYKDVVA  305 (316)
Q Consensus       282 ~~gVivG~Al~~~~g~~~~~~~~~  305 (316)
                      ++.|.+||++  +.+|..++++.+
T Consensus       310 aD~V~iGR~~--ladPdl~~k~~~  331 (361)
T 3gka_A          310 ADAVAWGKLF--IANPDLPRRFKL  331 (361)
T ss_dssp             CSEEEESHHH--HHCTTHHHHHHH
T ss_pred             ccEEEECHHh--HhCcHHHHHHHh
Confidence            9999999999  999987766643

>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}

Probab=98.46  E-value=6.5e-06  Score=71.68  Aligned_cols=177  Identities=18%  Similarity=0.070  Sum_probs=103.2

Q ss_pred             HHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHH-hC-CCcEEEecCCC--HHH-HHHHHHcCCCEEEeCCeee-cCC
Q 021156           95 AAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALH-AY-PGGLQVGGGIN--SDN-SLSYIEEGATHVIVTSYVF-NNG  168 (316)
Q Consensus        95 p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~-~~-~~pl~vGGGIr--~e~-~~~~l~~Gad~VVigt~~~-~~~  168 (316)
                      -+++++.+.. |++++++-+=-- ...-..+++.++ .. +.|+.++-++.  .++ ++.+.++|||.|.+-...- .. 
T Consensus        15 ~~~~~~~~~~-~v~~iev~~~~~-~~~g~~~i~~l~~~~~~~~i~~~l~~~di~~~~~~~a~~~Gad~v~vh~~~~~~~-   91 (207)
T 3ajx_A           15 ALELAGKVAE-YVDIIELGTPLI-KAEGLSVITAVKKAHPDKIVFADMKTMDAGELEADIAFKAGADLVTVLGSADDST-   91 (207)
T ss_dssp             HHHHHHHHGG-GCSEEEECHHHH-HHHCTHHHHHHHHHSTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSCHHH-
T ss_pred             HHHHHHHhhc-cCCEEEECcHHH-HhhCHHHHHHHHHhCCCCeEEEEEEecCccHHHHHHHHhCCCCEEEEeccCChHH-
Confidence            3345555544 567666622000 001122444454 44 68999877774  355 8899999999998743322 11 


Q ss_pred             CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEE-EEeecCCccccCCCCH-
Q 021156          169 QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEF-LVHGVDVEGKKLGIDD-  246 (316)
Q Consensus       169 ~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~i-lvtdi~~dG~~~G~d~-  246 (316)
                         .+.+.+..+++|. .+  .+++.           .+     -++.+.++.+.+.|++.+ +....+  +...|.++ 
T Consensus        92 ---~~~~~~~~~~~g~-~~--gv~~~-----------s~-----~~p~~~~~~~~~~g~d~v~~~~~~~--~~~~g~~~~  147 (207)
T 3ajx_A           92 ---IAGAVKAAQAHNK-GV--VVDLI-----------GI-----EDKATRAQEVRALGAKFVEMHAGLD--EQAKPGFDL  147 (207)
T ss_dssp             ---HHHHHHHHHHHTC-EE--EEECT-----------TC-----SSHHHHHHHHHHTTCSEEEEECCHH--HHTSTTCCT
T ss_pred             ---HHHHHHHHHHcCC-ce--EEEEe-----------cC-----CChHHHHHHHHHhCCCEEEEEeccc--ccccCCCch
Confidence               3334444444552 22  33331           00     034555667777799987 544333  22233322 


Q ss_pred             -HHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156          247 -ELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVA  305 (316)
Q Consensus       247 -eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~  305 (316)
                       +.++++.+. ++|+++.|||+ ++++.++++.|  ++++++||++  +..+ ++.+..+
T Consensus       148 ~~~i~~~~~~-~~pi~v~GGI~-~~~~~~~~~aG--ad~vvvGsaI--~~~~-dp~~~~~  200 (207)
T 3ajx_A          148 NGLLAAGEKA-RVPFSVAGGVK-VATIPAVQKAG--AEVAVAGGAI--YGAA-DPAAAAK  200 (207)
T ss_dssp             HHHHHHHHHH-TSCEEEESSCC-GGGHHHHHHTT--CSEEEESHHH--HTSS-SHHHHHH
T ss_pred             HHHHHHhhCC-CCCEEEECCcC-HHHHHHHHHcC--CCEEEEeeec--cCCC-CHHHHHH
Confidence             555555443 78999999998 78999999998  9999999999  6533 3444433

>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*

Probab=98.43  E-value=8.7e-07  Score=84.05  Aligned_cols=146  Identities=14%  Similarity=0.066  Sum_probs=99.6

Q ss_pred             HHHHHHHcCCCEEEeCCe--------------eecC--C-------CCCHHHHHHHHHHhcCc-eEEEeeeeeecCCeeE
Q 021156          146 NSLSYIEEGATHVIVTSY--------------VFNN--G-------QMDLERLKDLVRVVGKQ-RLVLDLSCRKKDGKYA  201 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~--------------~~~~--~-------~~~~eli~ei~~~~G~~-~IvvslD~k~~~g~~~  201 (316)
                      .++++.++|+|-|=|..+              .+.|  |       ++..|.++.+.+.+|++ .|.+-+...   + | 
T Consensus       148 AA~~a~~aGfDgVEih~ahGYLl~qFlsp~~N~R~D~yGGslenR~rf~~eiv~aVr~avg~d~pv~vRls~~---~-~-  222 (343)
T 3kru_A          148 AAKRANLAGYDVVEIHAAHGYLIHEFLSPLSNKRKDEYGNSIENRARFLIEVIDEVRKNWPENKPIFVRVSAD---D-Y-  222 (343)
T ss_dssp             HHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHTSCTTSCEEEEEECC---C-S-
T ss_pred             HHhhccccCCceEEEecccchhHHHhhcccccccchhhccchHhHHHHHHHHHHHHHhcCCccCCeEEEeech---h-h-
Confidence            356667899999988732              1222  1       22356777777777755 333322221   0 0 


Q ss_pred             EEeCCcceecccCHHHHHHHHHHcCCCEEEE-eecCCcc---ccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHH
Q 021156          202 IVTDRWQKFSDVYLDERVLDFLASYADEFLV-HGVDVEG---KKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKV  277 (316)
Q Consensus       202 v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilv-tdi~~dG---~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~  277 (316)
                       .-.||..   -+..++++.+++. ++.+-+ +....+.   ...|.++++++++++.+++||+++||+.+.+++.++++
T Consensus       223 -~~~g~~~---~~~~~~a~~l~~~-vd~i~vs~g~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~e~Ae~~l~  297 (343)
T 3kru_A          223 -MEGGINI---DMMVEYINMIKDK-VDLIDVSSGGLLNVDINLYPGYQVKYAETIKKRCNIKTSAVGLITTQELAEEILS  297 (343)
T ss_dssp             -STTSCCH---HHHHHHHHHHTTT-CSEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHTCEEEEESSCCCHHHHHHHHH
T ss_pred             -hccCccH---HHHHHHHHHhhcc-ccEEeccCCceEeeeecccCceeehHHHHHHHhcCcccceeeeeeHHHHHHHHHh
Confidence             0012321   2467789999999 998766 3332221   13456899999999988999999999999999999999


Q ss_pred             hCCCcCEEEEccchhhccCcccHHHHH
Q 021156          278 AGIGRVDVTVGSALDIFGGNLAYKDVV  304 (316)
Q Consensus       278 ~G~g~~gVivG~Al~~~~g~~~~~~~~  304 (316)
                      .| .++.|++||++  +.+|..++++.
T Consensus       298 ~G-~aD~V~iGR~~--lanPdl~~k~~  321 (343)
T 3kru_A          298 NE-RADLVALGREL--LRNPYWVLHTY  321 (343)
T ss_dssp             TT-SCSEEEESHHH--HHCTTHHHHTC
T ss_pred             ch-hhHHHHHHHHH--hcCCeEEEEEe
Confidence            98 59999999999  99998776654

>4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440}

Probab=98.43  E-value=9.7e-07  Score=84.32  Aligned_cols=141  Identities=12%  Similarity=0.022  Sum_probs=95.2

Q ss_pred             HHHHHHHcCCCEEEeCCee--------------ecC---C------CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEE
Q 021156          146 NSLSYIEEGATHVIVTSYV--------------FNN---G------QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAI  202 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~~--------------~~~---~------~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v  202 (316)
                      .++++.++|+|-|=|..+-              +.|   |      ++..|.++.+.+.+|++.|.+-+...  +.    
T Consensus       158 AA~~a~~aGfDgVEih~a~GYLl~QFLSp~~N~RtD~yGGslenR~rf~~eiv~aVr~~vg~~~v~vRls~~--~~----  231 (362)
T 4ab4_A          158 GAENAKAAGFDGVEIHGANGYLLDQFLQSSTNQRTDRYGGSLENRARLLLEVTDAAIEVWGAQRVGVHLAPR--AD----  231 (362)
T ss_dssp             HHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTT--CC----
T ss_pred             HHHHHHHcCCCEEEECCcCccHHHhhcCCccccccCCCCCchhhHHHHHHHHHHHHHHhcCCCceEEEeecc--cc----
Confidence            3566778999999886542              111   1      12346777777778755443322211  00    


Q ss_pred             EeCCcce-ecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCC
Q 021156          203 VTDRWQK-FSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIG  281 (316)
Q Consensus       203 ~~~gw~~-~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g  281 (316)
                       ..++.. ....+..++++.+++.|++.+-++...     .|+  ++++.+++.+++|||++||+ +.+++.++++.| +
T Consensus       232 -~~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~-----~~~--~~~~~ik~~~~iPvi~~Ggi-t~e~a~~~l~~g-~  301 (362)
T 4ab4_A          232 -AHDMGDADRAETFTYVARELGKRGIAFICSRERE-----ADD--SIGPLIKEAFGGPYIVNERF-DKASANAALASG-K  301 (362)
T ss_dssp             -SSSCCCTTHHHHHHHHHHHHHHTTCSEEEEECCC-----CTT--CCHHHHHHHHCSCEEEESSC-CHHHHHHHHHTT-S
T ss_pred             -ccccCCCCcHHHHHHHHHHHHHhCCCEEEECCCC-----CCH--HHHHHHHHHCCCCEEEeCCC-CHHHHHHHHHcC-C
Confidence             011110 001135678999999999988766543     233  45677887788999999999 999999999998 5


Q ss_pred             cCEEEEccchhhccCcccHHHHH
Q 021156          282 RVDVTVGSALDIFGGNLAYKDVV  304 (316)
Q Consensus       282 ~~gVivG~Al~~~~g~~~~~~~~  304 (316)
                      ++.|++||++  +.+|..++++.
T Consensus       302 aD~V~iGR~~--lanPdl~~k~~  322 (362)
T 4ab4_A          302 ADAVAFGVPF--IANPDLPARLA  322 (362)
T ss_dssp             CSEEEESHHH--HHCTTHHHHHH
T ss_pred             ccEEEECHHh--HhCcHHHHHHH
Confidence            9999999999  99998776664

>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1

Probab=98.42  E-value=8.8e-06  Score=72.64  Aligned_cols=172  Identities=12%  Similarity=0.092  Sum_probs=116.5

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHH-HHHhCCCcEEEecCCC--HHHHHHHHHcCCCEEEeCCeeecCCC
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIE-ALHAYPGGLQVGGGIN--SDNSLSYIEEGATHVIVTSYVFNNGQ  169 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~-~v~~~~~pl~vGGGIr--~e~~~~~l~~Gad~VVigt~~~~~~~  169 (316)
                      .+.+++++...+.|++.+.+-.-   .....+.++ ..++++ .+.+|.|.-  .++++.++++|||.|+.+.   .+  
T Consensus        29 ~~~~~~~~al~~gGv~~iel~~k---~~~~~~~i~~l~~~~~-~l~vgaGtvl~~d~~~~A~~aGAd~v~~p~---~d--   99 (224)
T 1vhc_A           29 DDILPLADTLAKNGLSVAEITFR---SEAAADAIRLLRANRP-DFLIAAGTVLTAEQVVLAKSSGADFVVTPG---LN--   99 (224)
T ss_dssp             GGHHHHHHHHHHTTCCEEEEETT---STTHHHHHHHHHHHCT-TCEEEEESCCSHHHHHHHHHHTCSEEECSS---CC--
T ss_pred             HHHHHHHHHHHHcCCCEEEEecc---CchHHHHHHHHHHhCc-CcEEeeCcEeeHHHHHHHHHCCCCEEEECC---CC--
Confidence            35778999999999886666522   223333444 444554 577777764  4889999999999998885   33  


Q ss_pred             CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHH
Q 021156          170 MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELV  249 (316)
Q Consensus       170 ~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli  249 (316)
                        ++.++...+ +|...+ +.  +.                   ++ +.+.++.+.|++.+-++.-.   ...|  .+.+
T Consensus       100 --~~v~~~ar~-~g~~~i-~G--v~-------------------t~-~e~~~A~~~Gad~vk~Fpa~---~~gG--~~~l  148 (224)
T 1vhc_A          100 --PKIVKLCQD-LNFPIT-PG--VN-------------------NP-MAIEIALEMGISAVKFFPAE---ASGG--VKMI  148 (224)
T ss_dssp             --HHHHHHHHH-TTCCEE-CE--EC-------------------SH-HHHHHHHHTTCCEEEETTTT---TTTH--HHHH
T ss_pred             --HHHHHHHHH-hCCCEE-ec--cC-------------------CH-HHHHHHHHCCCCEEEEeeCc---cccC--HHHH
Confidence              666665554 874433 33  21                   23 44677889999988775511   1112  6788


Q ss_pred             HHHhhcC-CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCc----ccHHHHHHHHHh
Q 021156          250 ALLGKYS-PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGN----LAYKDVVAWHAQ  309 (316)
Q Consensus       250 ~~l~~~~-~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~----~~~~~~~~~~~~  309 (316)
                      +.+++.. ++|+++.|||. .+.+.++++.| |++++. |+++  +...    =+++++.+.+++
T Consensus       149 k~l~~~~~~ipvvaiGGI~-~~N~~~~l~ag-ga~~v~-gS~i--~~~~~i~~~~~~~i~~~a~~  208 (224)
T 1vhc_A          149 KALLGPYAQLQIMPTGGIG-LHNIRDYLAIP-NIVACG-GSWF--VEKKLIQSNNWDEIGRLVRE  208 (224)
T ss_dssp             HHHHTTTTTCEEEEBSSCC-TTTHHHHHTST-TBCCEE-ECGG--GCHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHhhCCCCeEEEECCcC-HHHHHHHHhcC-CCEEEE-Echh--cCcchhccCCHHHHHHHHHH
Confidence            9998876 79999999995 58999999984 388888 9999  7532    235555554444

>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1

Probab=98.41  E-value=3.5e-07  Score=89.56  Aligned_cols=91  Identities=19%  Similarity=0.238  Sum_probs=74.2

Q ss_pred             CHHHHHHHHHHcCCCEEEEeecCCc-----------cccCCC-----CHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHH
Q 021156          214 YLDERVLDFLASYADEFLVHGVDVE-----------GKKLGI-----DDELVALLGKYS--PIPVTYAGGVTTMADLEKI  275 (316)
Q Consensus       214 ~~~e~a~~~~~~Ga~~ilvtdi~~d-----------G~~~G~-----d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l  275 (316)
                      +..++++.+++.|++.|++|.....           |.++|+     .+++++++++.+  ++|||++|||.|.+|+.+.
T Consensus       312 d~~~iA~~~~~aGaDgI~v~ntt~~~~d~~~~~~~~GGlSG~~~~~~sl~~i~~v~~~v~~~iPVIg~GGI~s~~DA~e~  391 (443)
T 1tv5_A          312 QKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEK  391 (443)
T ss_dssp             HHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCEEEEECCCcccccccccccccCCcCCCcchHHHHHHHHHHHHHcCCCCcEEEECCCCCHHHHHHH
Confidence            4678899999999999998775432           233443     357889998888  8999999999999999999


Q ss_pred             HHhCCCcCEEEEccchhhccCcccHHHHHHHH
Q 021156          276 KVAGIGRVDVTVGSALDIFGGNLAYKDVVAWH  307 (316)
Q Consensus       276 ~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~  307 (316)
                      +..|  ++.|.+|+++ .|+|++.++++.+.+
T Consensus       392 l~aG--Ad~Vqigral-l~~gP~l~~~i~~~l  420 (443)
T 1tv5_A          392 IEAG--ASVCQLYSCL-VFNGMKSAVQIKREL  420 (443)
T ss_dssp             HHTT--EEEEEESHHH-HHHGGGHHHHHHHHH
T ss_pred             HHcC--CCEEEEcHHH-HhcChHHHHHHHHHH
Confidence            9998  9999999996 256998888876644

>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*

Probab=98.39  E-value=5e-06  Score=79.28  Aligned_cols=120  Identities=23%  Similarity=0.302  Sum_probs=87.3

Q ss_pred             HHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHH
Q 021156          145 DNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLA  224 (316)
Q Consensus       145 e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~  224 (316)
                      +.++.+.+.|++.|.+.....     .++.++++.+ .| -.++  ..+.                   + .+.++.+.+
T Consensus       113 ~~~~~~~~~g~~~V~~~~g~~-----~~~~i~~~~~-~g-~~v~--~~v~-------------------t-~~~a~~a~~  163 (369)
T 3bw2_A          113 AKLAVLLDDPVPVVSFHFGVP-----DREVIARLRR-AG-TLTL--VTAT-------------------T-PEEARAVEA  163 (369)
T ss_dssp             HHHHHHHHSCCSEEEEESSCC-----CHHHHHHHHH-TT-CEEE--EEES-------------------S-HHHHHHHHH
T ss_pred             HHHHHHHhcCCCEEEEeCCCC-----cHHHHHHHHH-CC-CeEE--EECC-------------------C-HHHHHHHHH
Confidence            558888899999888753221     2677777755 33 1222  2221                   1 345888999


Q ss_pred             cCCCEEEEeecCCccc---cC------C--CC-HHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchh
Q 021156          225 SYADEFLVHGVDVEGK---KL------G--ID-DELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALD  292 (316)
Q Consensus       225 ~Ga~~ilvtdi~~dG~---~~------G--~d-~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~  292 (316)
                      .|++.+++.....-|+   ..      +  .+ +++++++++.+++||+++|||.+.+++.+++..|  +++|.+|+++ 
T Consensus       164 ~GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~~iPViaaGGI~~~~~~~~~l~~G--Ad~V~vGs~~-  240 (369)
T 3bw2_A          164 AGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAVDIPVVAAGGIMRGGQIAAVLAAG--ADAAQLGTAF-  240 (369)
T ss_dssp             TTCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHTT--CSEEEESHHH-
T ss_pred             cCCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHhcCceEEEECCCCCHHHHHHHHHcC--CCEEEEChHH-
Confidence            9999998866543222   10      1  34 8999999888899999999999999999999998  9999999999 


Q ss_pred             hccCc
Q 021156          293 IFGGN  297 (316)
Q Consensus       293 ~~~g~  297 (316)
                       +..+
T Consensus       241 -~~~~  244 (369)
T 3bw2_A          241 -LATD  244 (369)
T ss_dssp             -HTST
T ss_pred             -hCCc
Confidence             6544

>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A

Probab=98.38  E-value=1.3e-06  Score=78.22  Aligned_cols=179  Identities=14%  Similarity=0.140  Sum_probs=107.5

Q ss_pred             HHHHHHHcCCCcceEEEecCCc----ccHHHHHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHH
Q 021156           98 FANLYKEDGLTGGHAIMLGADP----LSKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLE  173 (316)
Q Consensus        98 ~a~~~~~~G~~~l~lvDLda~~----~~~~~i~~~v~~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~e  173 (316)
                      .++...+.|.+   .+-+.+..    .+-..+.+.+++.++|+..=-|- .+.    +-.|||.+++=+..-.+   +++
T Consensus        23 ~~~~~~~~GtD---~i~vGGs~gvt~~~~~~~v~~ik~~~~Pvvlfp~~-~~~----v~~gaD~~l~pslln~~---~~~   91 (228)
T 3vzx_A           23 QLEILCESGTD---AVIIGGSDGVTEDNVLRMMSKVRRFLVPCVLEVSA-IEA----IVPGFDLYFIPSVLNSK---NAD   91 (228)
T ss_dssp             HHHHHHTSSCS---EEEECCCSCCCHHHHHHHHHHHTTSSSCEEEECSC-GGG----CCSCCSEEEEEEETTBS---SGG
T ss_pred             HHHHHHHcCCC---EEEECCcCCCCHHHHHHHHHHhhccCCCEEEeCCC-HHH----ccccCCEEEEeeecCCC---Ccc
Confidence            44555677777   34454442    23344455555578888775554 222    23699998886655443   366


Q ss_pred             HH----HHHHHHhcC----ceEEEeeeeeecCCeeEEEeCCcc------eecccCH---HHHHHHHHHcCCCEEEEeecC
Q 021156          174 RL----KDLVRVVGK----QRLVLDLSCRKKDGKYAIVTDRWQ------KFSDVYL---DERVLDFLASYADEFLVHGVD  236 (316)
Q Consensus       174 li----~ei~~~~G~----~~IvvslD~k~~~g~~~v~~~gw~------~~~~~~~---~e~a~~~~~~Ga~~ilvtdi~  236 (316)
                      ++    .+..+++|-    +.+++.-        |.+...+..      ..+..++   ...+...+-.|.. +++++- 
T Consensus        92 ~i~g~~~~a~~~~g~~~~~~e~i~~g--------Yivv~p~s~~~~~~~a~~~~~~e~~~~~a~~a~~~g~~-~VYld~-  161 (228)
T 3vzx_A           92 WIVGMHQKAMKEYGELMSMEEIVAEG--------YCIANPDCKAAALTEADADLNMDDIVAYARVSELLQLP-IFYLEY-  161 (228)
T ss_dssp             GTTHHHHHHHHHHHHHHHHSCEEEEE--------EEECCSSSHHHHHTTBCCCCCHHHHHHHHHHHHHTTCS-EEEEEC-
T ss_pred             hhhhHHHHHHHHcCCCCcccceeeeE--------EEEECCCCcceeeecccCCCCHHHHHHHHHHHHHcCCC-EEEecC-
Confidence            65    223466762    2343321        111111110      0111223   2334444444555 445665 


Q ss_pred             CccccCCCCHHHHHHHhhcC-CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156          237 VEGKKLGIDDELVALLGKYS-PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVA  305 (316)
Q Consensus       237 ~dG~~~G~d~eli~~l~~~~-~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~  305 (316)
                       .|+. | |.++++++++.+ ++|++++|||++++++++++ .|  +++|+||+|+  ++++-.++++.+
T Consensus       162 -sG~~-~-~~~~i~~i~~~~~~~Pv~vGGGI~t~e~a~~~~-~g--AD~VVVGSa~--v~~p~~~~~~v~  223 (228)
T 3vzx_A          162 -SGVL-G-DIEAVKKTKAVLETSTLFYGGGIKDAETAKQYA-EH--ADVIVVGNAV--YEDFDRALKTVA  223 (228)
T ss_dssp             -TTSC-C-CHHHHHHHHHHCSSSEEEEESSCCSHHHHHHHH-TT--CSEEEECTHH--HHCHHHHHHHHH
T ss_pred             -CCCc-C-CHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHH-hC--CCEEEEChHH--hcCHHHHHHHHH
Confidence             4542 3 999999999988 79999999999999999998 57  9999999999  887544444443

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=98.38  E-value=1.6e-06  Score=88.68  Aligned_cols=148  Identities=16%  Similarity=0.033  Sum_probs=100.8

Q ss_pred             HHHHHHHHcCCCEEEeCCee--------------ecC---C------CCCHHHHHHHHHHhcCceEE-EeeeeeecCCee
Q 021156          145 DNSLSYIEEGATHVIVTSYV--------------FNN---G------QMDLERLKDLVRVVGKQRLV-LDLSCRKKDGKY  200 (316)
Q Consensus       145 e~~~~~l~~Gad~VVigt~~--------------~~~---~------~~~~eli~ei~~~~G~~~Iv-vslD~k~~~g~~  200 (316)
                      +.++++.++|+|-|=|...-              +.|   |      ++..|.++.+.+.+|++..+ +-+...  +-  
T Consensus       145 ~aA~~a~~aGfd~veih~~~gyl~~qFlsp~~n~r~d~yGgs~~~r~r~~~eiv~avr~~vG~~~~v~vrls~~--~~--  220 (671)
T 1ps9_A          145 RCAQLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSML--DL--  220 (671)
T ss_dssp             HHHHHHHHTTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEE--CC--
T ss_pred             HHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCcCcCCCcHHHHHHHHHHHHHHHHHHcCCCceEEEEECcc--cc--
Confidence            34677778999998774321              111   1      12346677777778765431 223221  10  


Q ss_pred             EEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCcc------cc--CCCCHHHHHHHhhcCCCcEEEEeCCCCHHHH
Q 021156          201 AIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEG------KK--LGIDDELVALLGKYSPIPVTYAGGVTTMADL  272 (316)
Q Consensus       201 ~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG------~~--~G~d~eli~~l~~~~~iPVIasGGI~s~eDi  272 (316)
                        ...||...   +..++++.+++.|++.+-++....+.      ..  .+..++.++++++.+++||+++||+.+.+++
T Consensus       221 --~~~g~~~~---~~~~~a~~l~~~g~d~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~iPvi~~Ggi~~~~~a  295 (671)
T 1ps9_A          221 --VEDGGTFA---ETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHVSLPLVTTNRINDPQVA  295 (671)
T ss_dssp             --STTCCCHH---HHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTTTTHHHHHHHTTSCSSCEEECSSCCSHHHH
T ss_pred             --CCCCCCHH---HHHHHHHHHHhcCCCEEEcCCCccccccccccccCCcchHHHHHHHHHHhcCceEEEeCCCCCHHHH
Confidence              01244321   46788999999999988766432221      11  1335789999999999999999999999999


Q ss_pred             HHHHHhCCCcCEEEEccchhhccCcccHHHHH
Q 021156          273 EKIKVAGIGRVDVTVGSALDIFGGNLAYKDVV  304 (316)
Q Consensus       273 ~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~  304 (316)
                      .++++.| +++.|.+||++  +.+|..++++.
T Consensus       296 ~~~l~~g-~aD~V~~gR~~--l~~P~l~~k~~  324 (671)
T 1ps9_A          296 DDILSRG-DADMVSMARPF--LADAELLSKAQ  324 (671)
T ss_dssp             HHHHHTT-SCSEEEESTHH--HHCTTHHHHHH
T ss_pred             HHHHHcC-CCCEEEeCHHH--HhCcHHHHHHH
Confidence            9999998 59999999999  99987766654

>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*

Probab=98.37  E-value=1.3e-05  Score=71.86  Aligned_cols=172  Identities=18%  Similarity=0.127  Sum_probs=113.3

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCc-cc---HHHHHHHHHh-CCCcEEEecCCC-HHH-HHHHHHcCCCEEEeCCee-e
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADP-LS---KAAAIEALHA-YPGGLQVGGGIN-SDN-SLSYIEEGATHVIVTSYV-F  165 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~-~~---~~~i~~~v~~-~~~pl~vGGGIr-~e~-~~~~l~~Gad~VVigt~~-~  165 (316)
                      +-.+..+.. +.|++++|+=-+|+.. +|   -..+++.+++ .+.|+.+-==+. .++ ++.+.++|||.+.+-.+. -
T Consensus        14 ~l~~~i~~~-~~gad~lHvDvmDG~fvpn~t~G~~~v~~lr~~~~~~~dvhLmv~dp~~~i~~~~~aGAd~itvh~Ea~~   92 (231)
T 3ctl_A           14 KFKEQIEFI-DSHADYFHIDIMDGHFVPNLTLSPFFVSQVKKLATKPLDCHLMVTRPQDYIAQLARAGADFITLHPETIN   92 (231)
T ss_dssp             GHHHHHHHH-HTTCSCEEEEEECSSSSSCCCBCHHHHHHHHTTCCSCEEEEEESSCGGGTHHHHHHHTCSEEEECGGGCT
T ss_pred             hHHHHHHHH-HcCCCEEEEEEEeCccCccchhcHHHHHHHHhccCCcEEEEEEecCHHHHHHHHHHcCCCEEEECcccCC
Confidence            344555666 7899999987778762 12   2345566664 457777766665 444 899999999999988766 4


Q ss_pred             cCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCc--cccCC
Q 021156          166 NNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVE--GKKLG  243 (316)
Q Consensus       166 ~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~d--G~~~G  243 (316)
                      .+    +..+-+..+++| -++.+++..    +               ++.+.++.+.+ +++.+++..++.-  |..-.
T Consensus        93 ~~----~~~~i~~i~~~G-~k~gv~lnp----~---------------tp~~~~~~~l~-~~D~VlvmsV~pGfggQ~f~  147 (231)
T 3ctl_A           93 GQ----AFRLIDEIRRHD-MKVGLILNP----E---------------TPVEAMKYYIH-KADKITVMTVDPGFAGQPFI  147 (231)
T ss_dssp             TT----HHHHHHHHHHTT-CEEEEEECT----T---------------CCGGGGTTTGG-GCSEEEEESSCTTCSSCCCC
T ss_pred             cc----HHHHHHHHHHcC-CeEEEEEEC----C---------------CcHHHHHHHHh-cCCEEEEeeeccCcCCcccc
Confidence            43    555555566676 344444421    1               11233333333 6998888776542  22112


Q ss_pred             C-CHHHHHHHhhcC-----CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEc-cchhhccC
Q 021156          244 I-DDELVALLGKYS-----PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVG-SALDIFGG  296 (316)
Q Consensus       244 ~-d~eli~~l~~~~-----~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG-~Al~~~~g  296 (316)
                      + .++.++++++..     ++++.+-|||. .+.+.++.++|  ++.+++| |++  |..
T Consensus       148 ~~~l~kI~~lr~~~~~~~~~~~I~VdGGI~-~~~~~~~~~aG--Ad~~V~G~sai--f~~  202 (231)
T 3ctl_A          148 PEMLDKLAELKAWREREGLEYEIEVDGSCN-QATYEKLMAAG--ADVFIVGTSGL--FNH  202 (231)
T ss_dssp             TTHHHHHHHHHHHHHHHTCCCEEEEESCCS-TTTHHHHHHHT--CCEEEECTTTT--GGG
T ss_pred             HHHHHHHHHHHHHHhccCCCceEEEECCcC-HHHHHHHHHcC--CCEEEEccHHH--hCC
Confidence            2 356666666543     68999999998 47899999999  8999999 999  753

>3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A*

Probab=98.36  E-value=1.7e-06  Score=83.12  Aligned_cols=145  Identities=14%  Similarity=0.050  Sum_probs=96.2

Q ss_pred             HHHHH-HcCCCEEEeCCee--------------e-cC---C-------CCCHHHHHHHHHHhcCceEEEeeeeeecCCee
Q 021156          147 SLSYI-EEGATHVIVTSYV--------------F-NN---G-------QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKY  200 (316)
Q Consensus       147 ~~~~l-~~Gad~VVigt~~--------------~-~~---~-------~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~  200 (316)
                      ++++. ++|+|-|=|...-              + .|   |       ++..|.++.+.+.+|++.|.+-+...  +. +
T Consensus       180 A~~a~~~aGfDgVEih~a~GYLl~QFlsp~~N~R~~D~yGG~slenR~r~~~eiv~aVr~avg~~~v~vRis~~--~~-~  256 (379)
T 3aty_A          180 AKNAIFKAGFDGVEIHGANGYLLDAFFRESSNKRQSGPYAGTTIDTRCQLIYDVTKSVCDAVGSDRVGLRISPL--NG-V  256 (379)
T ss_dssp             HHHHHHTSCCSEEEEEECTTSHHHHHHSTTTCCCCSSTTCTTSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTT--CC-G
T ss_pred             HHHHHHhcCCCEEEEcCcCchHHhhccCCCCCccccCCCCccChhhhHHHHHHHHHHHHHhcCCCeEEEEECcc--cc-c
Confidence            33567 8999998874321              1 22   1       12246677777778765443333221  00 0


Q ss_pred             EEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCC
Q 021156          201 AIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGI  280 (316)
Q Consensus       201 ~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~  280 (316)
                      .-...+|..   -+..++++.+++.|++.+-++....+.  .+...+ ++++++.+++|||++||+ +.+++.++++.| 
T Consensus       257 ~~~~~~~~~---~~~~~la~~l~~~Gvd~i~v~~~~~~~--~~~~~~-~~~ir~~~~iPvi~~G~i-t~~~a~~~l~~g-  328 (379)
T 3aty_A          257 HGMIDSNPE---ALTKHLCKKIEPLSLAYLHYLRGDMVN--QQIGDV-VAWVRGSYSGVKISNLRY-DFEEADQQIREG-  328 (379)
T ss_dssp             GGCCCSCHH---HHHHHHHHHHGGGCCSEEEEECSCTTS--CCCCCH-HHHHHTTCCSCEEEESSC-CHHHHHHHHHTT-
T ss_pred             ccCCCCCCH---HHHHHHHHHHHHhCCCEEEEcCCCcCC--CCccHH-HHHHHHHCCCcEEEECCC-CHHHHHHHHHcC-
Confidence            000012221   236788999999999988776533222  223336 889999999999999999 999999999998 


Q ss_pred             CcCEEEEccchhhccCcccHHHHH
Q 021156          281 GRVDVTVGSALDIFGGNLAYKDVV  304 (316)
Q Consensus       281 g~~gVivG~Al~~~~g~~~~~~~~  304 (316)
                      +++.|++||++  +.+|..++++.
T Consensus       329 ~aD~V~igR~~--l~~P~l~~k~~  350 (379)
T 3aty_A          329 KVDAVAFGAKF--IANPDLVERAQ  350 (379)
T ss_dssp             SCSEEEESHHH--HHCTTHHHHHH
T ss_pred             CCeEEEecHHH--HhCcHHHHHHH
Confidence            59999999999  99998776664

>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A

Probab=98.33  E-value=4.5e-06  Score=76.21  Aligned_cols=75  Identities=15%  Similarity=0.144  Sum_probs=59.9

Q ss_pred             HHHHHHHHcCCCEEEEeecCCccccCCC-CHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhcc
Q 021156          217 ERVLDFLASYADEFLVHGVDVEGKKLGI-DDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFG  295 (316)
Q Consensus       217 e~a~~~~~~Ga~~ilvtdi~~dG~~~G~-d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~  295 (316)
                      +.++++.+.|++.+.... ..-|+..+. +++.++.+++.+++||++.|||++.+|+.++.+.|  +++|+||+|+  +.
T Consensus       138 ~~a~~~~~~gad~v~~~~-~~~Gt~~~~~~~~~l~~i~~~~~iPviv~gGI~t~eda~~~~~~G--AdgViVGSAi--~~  212 (264)
T 1xm3_A          138 VLARKLEELGVHAIMPGA-SPIGSGQGILNPLNLSFIIEQAKVPVIVDAGIGSPKDAAYAMELG--ADGVLLNTAV--SG  212 (264)
T ss_dssp             HHHHHHHHHTCSCBEECS-SSTTCCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHTT--CSEEEESHHH--HT
T ss_pred             HHHHHHHHhCCCEEEECC-cccCCCCCCCCHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHcC--CCEEEEcHHH--hC
Confidence            567888889999773311 112444444 68899999888899999999999999999999998  9999999999  64


Q ss_pred             C
Q 021156          296 G  296 (316)
Q Consensus       296 g  296 (316)
                      .
T Consensus       213 a  213 (264)
T 1xm3_A          213 A  213 (264)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.32  E-value=1.3e-06  Score=89.67  Aligned_cols=148  Identities=16%  Similarity=0.102  Sum_probs=102.0

Q ss_pred             HHHHHHHHcCCCEEEeCC------------------------eeecCCCCCHHHHHHHHHHhcCc-eEEEeeeeeecCCe
Q 021156          145 DNSLSYIEEGATHVIVTS------------------------YVFNNGQMDLERLKDLVRVVGKQ-RLVLDLSCRKKDGK  199 (316)
Q Consensus       145 e~~~~~l~~Gad~VVigt------------------------~~~~~~~~~~eli~ei~~~~G~~-~IvvslD~k~~~g~  199 (316)
                      +.++++.++|+|-|=|..                        .+.++.++..|.++.+.+.+|++ .|.+-+...  +. 
T Consensus       160 ~aA~~a~~aGfDgVeih~a~gy~L~~qFlsp~~N~R~D~yGGs~enR~r~~~ei~~avr~~~g~~~~v~~r~s~~--~~-  236 (690)
T 3k30_A          160 NAVRRSIEAGYDIVYVYGAHGYSGVHHFLSKRYNQRTDEYGGSLENRMRLLRELLEDTLDECAGRAAVACRITVE--EE-  236 (690)
T ss_dssp             HHHHHHHHHTCSEEEEEECTTCSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHTTSSEEEEEEECC--CC-
T ss_pred             HHHHHHHHcCCCEEEEcccccchHHHHhCCCccCCCccccCCCHHHHHHHHHHHHHHHHHHhCCCceEEEEECcc--cc-
Confidence            446777789999998822                        12222224456777777778755 233333321  10 


Q ss_pred             eEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCc-----c--ccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHH
Q 021156          200 YAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVE-----G--KKLGIDDELVALLGKYSPIPVTYAGGVTTMADL  272 (316)
Q Consensus       200 ~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~d-----G--~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi  272 (316)
                         .-.||..   -+..++++.+++ +++.+-++.....     .  ...+++++.++.+++.+++|||++||+.++++.
T Consensus       237 ---~~~g~~~---~~~~~~~~~l~~-~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pvi~~G~i~~~~~a  309 (690)
T 3k30_A          237 ---IDGGITR---EDIEGVLRELGE-LPDLWDFAMGSWEGDSVTSRFAPEGRQEEFVAGLKKLTTKPVVGVGRFTSPDAM  309 (690)
T ss_dssp             ---STTSCCH---HHHHHHHHHHTT-SSSEEEEECSCHHHHTCCTTTCCTTTTHHHHTTSGGGCSSCEEECSCCCCHHHH
T ss_pred             ---CCCCCCH---HHHHHHHHHHHh-hcCEEEEecccccccCCCCccCCccccHHHHHHHHHHcCCeEEEeCCCCCHHHH
Confidence               0124432   135678888877 7888766653211     1  124557889999999999999999999999999


Q ss_pred             HHHHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156          273 EKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVA  305 (316)
Q Consensus       273 ~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~  305 (316)
                      .++++.| .++.|++||++  +.+|+.++++.+
T Consensus       310 ~~~l~~g-~~d~v~~gR~~--~~~P~~~~~~~~  339 (690)
T 3k30_A          310 VRQIKAG-ILDLIGAARPS--IADPFLPNKIRD  339 (690)
T ss_dssp             HHHHHTT-SCSEEEESHHH--HHCTTHHHHHHT
T ss_pred             HHHHHCC-CcceEEEcHHh--HhCccHHHHHHc
Confidence            9999998 59999999999  999988877643

>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}

Probab=98.29  E-value=3.4e-06  Score=76.62  Aligned_cols=157  Identities=14%  Similarity=0.111  Sum_probs=102.0

Q ss_pred             HHHHHHHHhC--CCcEEEecCCC------HHH-HHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeee
Q 021156          123 AAAIEALHAY--PGGLQVGGGIN------SDN-SLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSC  193 (316)
Q Consensus       123 ~~i~~~v~~~--~~pl~vGGGIr------~e~-~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~  193 (316)
                      ..+.+.++++  .+|+.+=|=.+      .+. ++++.++|+|.+++-....+.    .+.+.+..+++|-+.|.+.-  
T Consensus        76 ~~~~~~~~~~r~~~Pivlm~Y~N~i~~~G~e~F~~~~~~aGvdG~IipDLP~eE----~~~~~~~~~~~Gl~~I~lva--  149 (252)
T 3tha_A           76 HSVFELLARIKTKKALVFMVYYNLIFSYGLEKFVKKAKSLGICALIVPELSFEE----SDDLIKECERYNIALITLVS--  149 (252)
T ss_dssp             HHHHHHHHHCCCSSEEEEECCHHHHHHHCHHHHHHHHHHTTEEEEECTTCCGGG----CHHHHHHHHHTTCEECEEEE--
T ss_pred             HHHHHHHHHHhcCCCEEEEeccCHHHHhhHHHHHHHHHHcCCCEEEeCCCCHHH----HHHHHHHHHHcCCeEEEEeC--
Confidence            4455666543  37887755433      233 677788999999998887765    67777888888733221111  


Q ss_pred             eecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeec-CCccccCCCC---HHHHHHHhhcCCCcEEEEeCCCCH
Q 021156          194 RKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGV-DVEGKKLGID---DELVALLGKYSPIPVTYAGGVTTM  269 (316)
Q Consensus       194 k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi-~~dG~~~G~d---~eli~~l~~~~~iPVIasGGI~s~  269 (316)
                                        ..+..+.+++..+.+-+.+.+.+. ...|..++.+   .++++++++.+++|+++++||++.
T Consensus       150 ------------------P~t~~eRi~~ia~~a~gFiY~Vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGfGIst~  211 (252)
T 3tha_A          150 ------------------VTTPKERVKKLVKHAKGFIYLLASIGITGTKSVEEAILQDKVKEIRSFTNLPIFVGFGIQNN  211 (252)
T ss_dssp             ------------------TTSCHHHHHHHHTTCCSCEEEECCSCSSSCSHHHHHHHHHHHHHHHTTCCSCEEEESSCCSH
T ss_pred             ------------------CCCcHHHHHHHHHhCCCeEEEEecCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEcCcCCH
Confidence                              112357777887775554433332 1233333322   357888888889999999999999


Q ss_pred             HHHHHHHHhCCCcCEEEEccchhhcc--CcccHHHHHHHHH
Q 021156          270 ADLEKIKVAGIGRVDVTVGSALDIFG--GNLAYKDVVAWHA  308 (316)
Q Consensus       270 eDi~~l~~~G~g~~gVivG~Al~~~~--g~~~~~~~~~~~~  308 (316)
                      +++.++.+ +  ++|||||+|+  ..  ..-..+++.+.+.
T Consensus       212 e~a~~~~~-~--ADGVIVGSAi--Vk~i~~~~~~~~~~~~~  247 (252)
T 3tha_A          212 QDVKRMRK-V--ADGVIVGTSI--VKCFKQGNLDIIMKDIE  247 (252)
T ss_dssp             HHHHHHTT-T--SSEEEECHHH--HHHTTSSCHHHHHHHHH
T ss_pred             HHHHHHHh-c--CCEEEECHHH--HHHHHhcCHHHHHHHHH
Confidence            99998875 4  8999999999  53  2224455555443

>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*

Probab=98.27  E-value=5.3e-06  Score=79.36  Aligned_cols=138  Identities=12%  Similarity=0.018  Sum_probs=85.8

Q ss_pred             HcCCCcceEEEecC-----Ccc----cHHHHHHHHH-hCCCcEEE---ecCCCHHHHHHHHHcCCCEEEeCCeeecCCCC
Q 021156          104 EDGLTGGHAIMLGA-----DPL----SKAAAIEALH-AYPGGLQV---GGGINSDNSLSYIEEGATHVIVTSYVFNNGQM  170 (316)
Q Consensus       104 ~~G~~~l~lvDLda-----~~~----~~~~i~~~v~-~~~~pl~v---GGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~  170 (316)
                      ++++..+|+.++..     +..    .....++.++ .+++|+++   |+|+..++++.+.++|+|.|+++...-.+   
T Consensus       148 ~a~al~Ihln~~~~~~~p~g~~~~~~~~~~~i~~i~~~~~vPVivK~vG~g~s~~~A~~l~~aGad~I~V~g~GGt~---  224 (368)
T 3vkj_A          148 EADAIAVHLNPAQEVFQPEGEPEYQIYALEKLRDISKELSVPIIVKESGNGISMETAKLLYSYGIKNFDTSGQGGTN---  224 (368)
T ss_dssp             TCSEEEEECCHHHHHHSSSCCCBCBTHHHHHHHHHHTTCSSCEEEECSSSCCCHHHHHHHHHTTCCEEECCCBTSBC---
T ss_pred             cCCCeEEEecchhhhhCCCCCchhhHHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHhCCCCEEEEeCCCCCc---
Confidence            46777778777642     111    1344445554 57899999   88888899999999999999996543222   


Q ss_pred             CHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHH
Q 021156          171 DLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVA  250 (316)
Q Consensus       171 ~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~  250 (316)
                       ...++.....-+        |-.                    .......+.+.|.                |-...+.
T Consensus       225 -~~~iE~~R~~~~--------~~~--------------------~~~~~~~~~~~g~----------------pt~~~l~  259 (368)
T 3vkj_A          225 -WIAIEMIRDIRR--------GNW--------------------KAESAKNFLDWGV----------------PTAASIM  259 (368)
T ss_dssp             -HHHHHHHHHHHT--------TCT--------------------HHHHHHHTTTCSC----------------BHHHHHH
T ss_pred             -ccchhhhhcccc--------ccc--------------------chhhccccccccc----------------cHHHHHH
Confidence             333333321100        000                    0000000111111                1123344


Q ss_pred             HHhhcC-CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          251 LLGKYS-PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       251 ~l~~~~-~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      ++++.+ ++|||++|||++..|+.+++.+|  +++|++|+++
T Consensus       260 ~v~~~~~~ipvia~GGI~~~~d~~kal~lG--A~~v~ig~~~  299 (368)
T 3vkj_A          260 EVRYSVPDSFLVGSGGIRSGLDAAKAIALG--ADIAGMALPV  299 (368)
T ss_dssp             HHHHHSTTCEEEEESSCCSHHHHHHHHHHT--CSEEEECHHH
T ss_pred             HHHHHcCCCcEEEECCCCCHHHHHHHHHcC--CCEEEEcHHH
Confidence            555544 48999999999999999999998  9999999988

>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*

Probab=98.26  E-value=4.5e-05  Score=67.51  Aligned_cols=172  Identities=13%  Similarity=0.091  Sum_probs=114.2

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHH-HHHhCCCcEEEecCC-C-HHHHHHHHHcCCCEEEeCCeeecCCC
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIE-ALHAYPGGLQVGGGI-N-SDNSLSYIEEGATHVIVTSYVFNNGQ  169 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~-~v~~~~~pl~vGGGI-r-~e~~~~~l~~Gad~VVigt~~~~~~~  169 (316)
                      .+.+++++...+.|++.+.+-.-+   ....+.++ ..++++ .+.+|.|. - .++++.++++|||.|+.+..   +  
T Consensus        28 ~~~~~~~~al~~gGv~~iel~~k~---~~~~~~i~~l~~~~~-~~~vgagtvi~~d~~~~A~~aGAd~v~~p~~---d--   98 (214)
T 1wbh_A           28 EHAVPMAKALVAGGVRVLNVTLRT---ECAVDAIRAIAKEVP-EAIVGAGTVLNPQQLAEVTEAGAQFAISPGL---T--   98 (214)
T ss_dssp             GGHHHHHHHHHHTTCCEEEEESCS---TTHHHHHHHHHHHCT-TSEEEEESCCSHHHHHHHHHHTCSCEEESSC---C--
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCC---hhHHHHHHHHHHHCc-CCEEeeCEEEEHHHHHHHHHcCCCEEEcCCC---C--
Confidence            356789999999998876666322   23333444 444554 34555555 3 48899999999999998752   2  


Q ss_pred             CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHH
Q 021156          170 MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELV  249 (316)
Q Consensus       170 ~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli  249 (316)
                        ++. .+..+.+|...+ +.  +.                   ++ +.+.+..+.|++.+-++.-.   ...|  .+.+
T Consensus        99 --~~v-~~~~~~~g~~~i-~G--~~-------------------t~-~e~~~A~~~Gad~v~~Fpa~---~~gG--~~~l  147 (214)
T 1wbh_A           99 --EPL-LKAATEGTIPLI-PG--IS-------------------TV-SELMLGMDYGLKEFKFFPAE---ANGG--VKAL  147 (214)
T ss_dssp             --HHH-HHHHHHSSSCEE-EE--ES-------------------SH-HHHHHHHHTTCCEEEETTTT---TTTH--HHHH
T ss_pred             --HHH-HHHHHHhCCCEE-Ee--cC-------------------CH-HHHHHHHHCCCCEEEEecCc---cccC--HHHH
Confidence              554 455556763332 33  21                   23 44677889999988775511   1112  6788


Q ss_pred             HHHhhcC-CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCc----ccHHHHHHHHHh
Q 021156          250 ALLGKYS-PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGN----LAYKDVVAWHAQ  309 (316)
Q Consensus       250 ~~l~~~~-~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~----~~~~~~~~~~~~  309 (316)
                      +.++... ++|+++.|||. .+.+.++++.| |++++. |+++  +...    =.++++.+.+++
T Consensus       148 k~i~~~~~~ipvvaiGGI~-~~n~~~~l~ag-g~~~v~-gS~i--~~~~~~~~~~~~~i~~~a~~  207 (214)
T 1wbh_A          148 QAIAGPFSQVRFCPTGGIS-PANYRDYLALK-SVLCIG-GSWL--VPADALEAGDYDRITKLARE  207 (214)
T ss_dssp             HHHHTTCTTCEEEEBSSCC-TTTHHHHHTST-TBSCEE-EGGG--SCHHHHHHTCHHHHHHHHHH
T ss_pred             HHHhhhCCCCeEEEECCCC-HHHHHHHHhcC-CCeEEE-eccc--cChhhhhcCCHHHHHHHHHH
Confidence            9998876 89999999995 58999999984 388888 9999  6432    234555555444

>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}

Probab=98.25  E-value=5.3e-05  Score=67.92  Aligned_cols=172  Identities=17%  Similarity=0.235  Sum_probs=115.6

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHH-hCCCcEEEecC-CC-HHHHHHHHHcCCCEEEeCCeeecCCC
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALH-AYPGGLQVGGG-IN-SDNSLSYIEEGATHVIVTSYVFNNGQ  169 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~-~~~~pl~vGGG-Ir-~e~~~~~l~~Gad~VVigt~~~~~~~  169 (316)
                      .+..++++.+.+.|++.+-+. +.  .++..+.++.++ +++- +.+|.| +- .++++.+.++||+.|+....      
T Consensus        46 ~~a~~~a~al~~gGi~~iEvt-~~--t~~a~e~I~~l~~~~~~-~~iGaGTVlt~~~a~~Ai~AGA~fIvsP~~------  115 (232)
T 4e38_A           46 EDIIPLGKVLAENGLPAAEIT-FR--SDAAVEAIRLLRQAQPE-MLIGAGTILNGEQALAAKEAGATFVVSPGF------  115 (232)
T ss_dssp             GGHHHHHHHHHHTTCCEEEEE-TT--STTHHHHHHHHHHHCTT-CEEEEECCCSHHHHHHHHHHTCSEEECSSC------
T ss_pred             HHHHHHHHHHHHCCCCEEEEe-CC--CCCHHHHHHHHHHhCCC-CEEeECCcCCHHHHHHHHHcCCCEEEeCCC------
Confidence            467889999999998865552 22  233444555554 4554 455544 44 59999999999999987652      


Q ss_pred             CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHH
Q 021156          170 MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELV  249 (316)
Q Consensus       170 ~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli  249 (316)
                       +++.++.. +++| -.+++  ++.                   ++ +.+....+.|++.+-++.-+.-   .  ..+.+
T Consensus       116 -~~~vi~~~-~~~g-i~~ip--Gv~-------------------Tp-tEi~~A~~~Gad~vK~FPa~~~---g--G~~~l  165 (232)
T 4e38_A          116 -NPNTVRAC-QEIG-IDIVP--GVN-------------------NP-STVEAALEMGLTTLKFFPAEAS---G--GISMV  165 (232)
T ss_dssp             -CHHHHHHH-HHHT-CEEEC--EEC-------------------SH-HHHHHHHHTTCCEEEECSTTTT---T--HHHHH
T ss_pred             -CHHHHHHH-HHcC-CCEEc--CCC-------------------CH-HHHHHHHHcCCCEEEECcCccc---c--CHHHH
Confidence             37777664 4454 22222  331                   23 4566778999998876654211   1  35889


Q ss_pred             HHHhhc-CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCc----ccHHHHHHHHHh
Q 021156          250 ALLGKY-SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGN----LAYKDVVAWHAQ  309 (316)
Q Consensus       250 ~~l~~~-~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~----~~~~~~~~~~~~  309 (316)
                      +.++.. .++|+++.|||. ++.+.++++.|  +.++++|+.+  ....    =+++++.+.+++
T Consensus       166 kal~~p~p~ip~~ptGGI~-~~n~~~~l~aG--a~~~vgGs~l--~~~~~i~~~~~~~i~~~a~~  225 (232)
T 4e38_A          166 KSLVGPYGDIRLMPTGGIT-PSNIDNYLAIP--QVLACGGTWM--VDKKLVTNGEWDEIARLTRE  225 (232)
T ss_dssp             HHHHTTCTTCEEEEBSSCC-TTTHHHHHTST--TBCCEEECGG--GCHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhcCCCeeeEcCCC-HHHHHHHHHCC--CeEEEECchh--cChHHhhcCCHHHHHHHHHH
Confidence            999875 479999999996 79999999998  7778889998  5321    145566555554

>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*

Probab=98.24  E-value=1.1e-05  Score=76.27  Aligned_cols=139  Identities=13%  Similarity=0.165  Sum_probs=87.4

Q ss_pred             CCCcE--EEecCCCHHHHHHHH-HcCCCEEEeCCeeec-------CCCC--CHHHHHHHHHHhcCceEEEeeeeeecCCe
Q 021156          132 YPGGL--QVGGGINSDNSLSYI-EEGATHVIVTSYVFN-------NGQM--DLERLKDLVRVVGKQRLVLDLSCRKKDGK  199 (316)
Q Consensus       132 ~~~pl--~vGGGIr~e~~~~~l-~~Gad~VVigt~~~~-------~~~~--~~eli~ei~~~~G~~~IvvslD~k~~~g~  199 (316)
                      .+.|+  +++.|...+.+.+.+ .+|++.+.+.....+       ++.+  ..+.++++.+.++ -.++    +|     
T Consensus       115 ~~~pv~~~i~~~~~~~~~~~~~~~~gad~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~vr~~~~-~Pv~----vK-----  184 (349)
T 1p0k_A          115 PNGLIFANLGSEATAAQAKEAVEMIGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSRVS-VPVI----VK-----  184 (349)
T ss_dssp             SSSCEEEEEETTCCHHHHHHHHHHTTCSEEEEEECTTTTC--------CTTHHHHHHHHHHHCS-SCEE----EE-----
T ss_pred             CCceeEEeecCCCCHHHHHHHHHhcCCCeEEecccchhhhcCCCCCcchHHHHHHHHHHHHHcC-CCEE----EE-----
Confidence            44555  466566655555544 579998877543211       1111  1355666665542 1222    22     


Q ss_pred             eEEEeCCcceecccCHHHHHHHHHHcCCCEEEE--eecC--------Ccc------ccCCC-CHHHHHHHhhcC-CCcEE
Q 021156          200 YAIVTDRWQKFSDVYLDERVLDFLASYADEFLV--HGVD--------VEG------KKLGI-DDELVALLGKYS-PIPVT  261 (316)
Q Consensus       200 ~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilv--tdi~--------~dG------~~~G~-d~eli~~l~~~~-~iPVI  261 (316)
                          ..++.    .+ .+.++.+.+.|++.|++  |.-+        +..      ...|+ .++.++++.+.+ ++|||
T Consensus       185 ----~~~~~----~~-~~~a~~a~~~Gad~I~v~~~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l~~v~~~~~~ipvi  255 (349)
T 1p0k_A          185 ----EVGFG----MS-KASAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEFPASTMI  255 (349)
T ss_dssp             ----EESSC----CC-HHHHHHHHHHTCSEEEEEC---------------CCGGGGTTCSCCHHHHHHHHHHHCTTSEEE
T ss_pred             ----ecCCC----CC-HHHHHHHHHcCCCEEEEcCCCCcchhhHHHhhcccchhhhhccCccHHHHHHHHHHhcCCCeEE
Confidence                11111    12 46789999999999987  3221        110      12333 678888888765 89999


Q ss_pred             EEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          262 YAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       262 asGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      ++|||++.+|+.+++.+|  +++|+||+++
T Consensus       256 a~GGI~~~~d~~k~l~~G--Ad~V~iG~~~  283 (349)
T 1p0k_A          256 ASGGLQDALDVAKAIALG--ASCTGMAGHF  283 (349)
T ss_dssp             EESSCCSHHHHHHHHHTT--CSEEEECHHH
T ss_pred             EECCCCCHHHHHHHHHcC--CCEEEEcHHH
Confidence            999999999999999998  9999999998

>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*

Probab=98.22  E-value=1.2e-05  Score=76.97  Aligned_cols=74  Identities=14%  Similarity=0.130  Sum_probs=60.9

Q ss_pred             HHHHHHHHHcCCCEEEEeecCCccccCCC-CHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          216 DERVLDFLASYADEFLVHGVDVEGKKLGI-DDELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       216 ~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~-d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      .+.++.+.+.|++.|.++.-..-....|+ +++.+.++++.+  ++|||++|||++.+|+.+++.+|  +++|+||+++
T Consensus       240 ~e~a~~a~~~Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~~v~~~ipVia~GGI~~g~D~~kalalG--Ad~V~iGr~~  316 (368)
T 2nli_A          240 PEDADMAIKRGASGIWVSNHGARQLYEAPGSFDTLPAIAERVNKRVPIVFDSGVRRGEHVAKALASG--ADVVALGRPV  316 (368)
T ss_dssp             HHHHHHHHHTTCSEEEECCGGGTSCSSCCCHHHHHHHHHHHHTTSSCEEECSSCCSHHHHHHHHHTT--CSEEEECHHH
T ss_pred             HHHHHHHHHcCCCEEEEcCCCcCCCCCCCChHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcC--CCEEEECHHH
Confidence            47899999999999988442111122344 789999998766  69999999999999999999998  9999999988

>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0

Probab=98.22  E-value=1.2e-05  Score=76.84  Aligned_cols=74  Identities=20%  Similarity=0.136  Sum_probs=60.1

Q ss_pred             HHHHHHHHHcCCCEEEEeec-CCccccCCCCHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          216 DERVLDFLASYADEFLVHGV-DVEGKKLGIDDELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       216 ~e~a~~~~~~Ga~~ilvtdi-~~dG~~~G~d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      .+.++.+.+.|++.|.+..- .+.-....++++.+.++++.+  ++|||++|||++.+|+.+++.+|  +++|+||+++
T Consensus       236 ~e~a~~a~~~Gad~I~vs~~ggr~~~~~~~~~~~l~~v~~~~~~~ipvia~GGI~~~~D~~k~l~~G--AdaV~iGr~~  312 (370)
T 1gox_A          236 AEDARLAVQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALG--AAGVFIGRPV  312 (370)
T ss_dssp             HHHHHHHHHTTCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTTTSSCEEEESSCCSHHHHHHHHHHT--CSEEEECHHH
T ss_pred             HHHHHHHHHcCCCEEEECCCCCccCCCcccHHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHHHcC--CCEEeecHHH
Confidence            47789999999999988331 111111135889999998876  79999999999999999999998  9999999998

>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1

Probab=98.20  E-value=1.6e-05  Score=71.07  Aligned_cols=171  Identities=14%  Similarity=0.082  Sum_probs=113.7

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHH-HHHhCCCcEEEecCCC--HHHHHHHHHcCCCEEEeCCeeecCCC
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIE-ALHAYPGGLQVGGGIN--SDNSLSYIEEGATHVIVTSYVFNNGQ  169 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~-~v~~~~~pl~vGGGIr--~e~~~~~l~~Gad~VVigt~~~~~~~  169 (316)
                      .+.+++++...+.|++.+.+-.-   .....+.++ ..++++ .+.+|.|.-  .++++.++++||+.|+.+..   +  
T Consensus        38 ~~~~~~~~al~~gGv~~iel~~k---~~~~~~~i~~l~~~~~-~~~igagtvl~~d~~~~A~~aGAd~v~~p~~---d--  108 (225)
T 1mxs_A           38 EDILPLADALAAGGIRTLEVTLR---SQHGLKAIQVLREQRP-ELCVGAGTVLDRSMFAAVEAAGAQFVVTPGI---T--  108 (225)
T ss_dssp             GGHHHHHHHHHHTTCCEEEEESS---STHHHHHHHHHHHHCT-TSEEEEECCCSHHHHHHHHHHTCSSEECSSC---C--
T ss_pred             HHHHHHHHHHHHCCCCEEEEecC---CccHHHHHHHHHHhCc-ccEEeeCeEeeHHHHHHHHHCCCCEEEeCCC---C--
Confidence            35778999999999886666522   122333444 444553 466776664  48899999999999998752   2  


Q ss_pred             CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHH
Q 021156          170 MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELV  249 (316)
Q Consensus       170 ~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli  249 (316)
                        ++. .+..+.+|... ++.  +.                   ++ +.+.+..+.|++.+-++.-.   ...|  .+.+
T Consensus       109 --~~v-~~~~~~~g~~~-i~G--~~-------------------t~-~e~~~A~~~Gad~vk~FPa~---~~~G--~~~l  157 (225)
T 1mxs_A          109 --EDI-LEAGVDSEIPL-LPG--IS-------------------TP-SEIMMGYALGYRRFKLFPAE---ISGG--VAAI  157 (225)
T ss_dssp             --HHH-HHHHHHCSSCE-ECE--EC-------------------SH-HHHHHHHTTTCCEEEETTHH---HHTH--HHHH
T ss_pred             --HHH-HHHHHHhCCCE-EEe--eC-------------------CH-HHHHHHHHCCCCEEEEccCc---cccC--HHHH
Confidence              554 45555676332 222  21                   23 45677889999988775511   1112  5778


Q ss_pred             HHHhhcC-CCcEEEEeCCCCHHHHHHHHH-hCCCcCEEEEccchhhccCc----ccHHHHHHHHHh
Q 021156          250 ALLGKYS-PIPVTYAGGVTTMADLEKIKV-AGIGRVDVTVGSALDIFGGN----LAYKDVVAWHAQ  309 (316)
Q Consensus       250 ~~l~~~~-~iPVIasGGI~s~eDi~~l~~-~G~g~~gVivG~Al~~~~g~----~~~~~~~~~~~~  309 (316)
                      +.++... ++|+++.|||. .+.+.++++ .|  +++|. |+++  +...    =.++++.+.+++
T Consensus       158 k~i~~~~~~ipvvaiGGI~-~~N~~~~l~~~G--a~~v~-gSai--~~~~~i~~~~~~~i~~~a~~  217 (225)
T 1mxs_A          158 KAFGGPFGDIRFCPTGGVN-PANVRNYMALPN--VMCVG-TTWM--LDSSWIKNGDWARIEACSAE  217 (225)
T ss_dssp             HHHHTTTTTCEEEEBSSCC-TTTHHHHHHSTT--BCCEE-ECTT--SCHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHhhCCCCeEEEECCCC-HHHHHHHHhccC--CEEEE-Echh--cCchhhccCCHHHHHHHHHH
Confidence            8998776 89999999994 579999999 46  89999 9999  7522    135556555544

>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}

Probab=98.18  E-value=1.8e-05  Score=76.13  Aligned_cols=141  Identities=16%  Similarity=0.147  Sum_probs=88.3

Q ss_pred             HHHHHhCCCcEEEecCC-CH-HHHHHHHHcCCCEEEeCCee----ecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCe
Q 021156          126 IEALHAYPGGLQVGGGI-NS-DNSLSYIEEGATHVIVTSYV----FNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGK  199 (316)
Q Consensus       126 ~~~v~~~~~pl~vGGGI-r~-e~~~~~l~~Gad~VVigt~~----~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~  199 (316)
                      ++.+++.+.|+.+-.+. +. +.++.+.++|++.+++....    +..++.+++.+.++.+.++ -.+++    +  +. 
T Consensus       148 i~~~~~~g~~v~~~v~~~~~~e~a~~~~~agad~i~i~~~~~~~~~~~~~~~~~~i~~l~~~~~-~pvi~----g--gi-  219 (393)
T 2qr6_A          148 IAQVRDSGEIVAVRVSPQNVREIAPIVIKAGADLLVIQGTLISAEHVNTGGEALNLKEFIGSLD-VPVIA----G--GV-  219 (393)
T ss_dssp             HHHHHHTTSCCEEEECTTTHHHHHHHHHHTTCSEEEEECSSCCSSCCCC-----CHHHHHHHCS-SCEEE----E--CC-
T ss_pred             HHHHhhcCCeEEEEeCCccHHHHHHHHHHCCCCEEEEeCCccccccCCCcccHHHHHHHHHhcC-CCEEE----C--Cc-
Confidence            34444446666654443 44 55777778999988774211    1111112455666766653 22222    2  11 


Q ss_pred             eEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccc----cCC-CCHHHHHHHhhc-------CC---CcEEEEe
Q 021156          200 YAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGK----KLG-IDDELVALLGKY-------SP---IPVTYAG  264 (316)
Q Consensus       200 ~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~----~~G-~d~eli~~l~~~-------~~---iPVIasG  264 (316)
                                   .+ .+.++.+.+.|++.|.+ ...-.++    ..| +.++.+.++.+.       ++   +|||++|
T Consensus       220 -------------~t-~e~a~~~~~~Gad~i~v-g~Gg~~~~~~~~~g~~~~~~l~~v~~~~~~~~~~~~~~~ipvia~G  284 (393)
T 2qr6_A          220 -------------ND-YTTALHMMRTGAVGIIV-GGGENTNSLALGMEVSMATAIADVAAARRDYLDETGGRYVHIIADG  284 (393)
T ss_dssp             -------------CS-HHHHHHHHTTTCSEEEE-SCCSCCHHHHTSCCCCHHHHHHHHHHHHHHHHHHHTSCCCEEEECS
T ss_pred             -------------CC-HHHHHHHHHcCCCEEEE-CCCcccccccCCCCCChHHHHHHHHHHHHHhHhhcCCcceEEEEEC
Confidence                         12 36688999999999887 3200111    123 367777777654       44   9999999


Q ss_pred             CCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          265 GVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       265 GI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      ||++.+|+.+++.+|  +++|++|+++
T Consensus       285 GI~~~~dv~kalalG--A~~V~iG~~~  309 (393)
T 2qr6_A          285 SIENSGDVVKAIACG--ADAVVLGSPL  309 (393)
T ss_dssp             SCCSHHHHHHHHHHT--CSEEEECGGG
T ss_pred             CCCCHHHHHHHHHcC--CCEEEECHHH
Confidence            999999999999999  9999999996

>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}

Probab=98.18  E-value=8.3e-06  Score=73.45  Aligned_cols=179  Identities=16%  Similarity=0.041  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHcCCCcceEEEecCCc-ccH---HHHHHHHHh-C--CCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeeec
Q 021156           95 AAEFANLYKEDGLTGGHAIMLGADP-LSK---AAAIEALHA-Y--PGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        95 p~e~a~~~~~~G~~~l~lvDLda~~-~~~---~~i~~~v~~-~--~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      -.+.++...+.|++++|+=-.|+.. +|.   ..+++.+++ +  ++.+.+-   +. .-++.++++|||.+.+-.+...
T Consensus        28 l~~~i~~~~~~gad~lhvDvmDG~fvpn~t~G~~~v~~lr~~~~~DvhLMv~---~p~~~i~~~~~aGAd~itvH~ea~~  104 (237)
T 3cu2_A           28 LNEEVTTLLENQINVLHFDIADGQFSSLFTVGAIGIKYFPTHCFKDVHLMVR---NQLEVAKAVVANGANLVTLQLEQYH  104 (237)
T ss_dssp             HHHHHHHHHHTTCCEEEEEEEBSSSSSCBCBCTHHHHTSCTTSEEEEEEECS---CHHHHHHHHHHTTCSEEEEETTCTT
T ss_pred             HHHHHHHHHHcCCCEEEEEEecCccccchhhhHHHHHHHhhhCCCCeEEEEE---CHHHHHHHHHHcCCCEEEEecCCcc
Confidence            4455667777899999988788752 221   134444443 2  3444433   23 4488999999999777555444


Q ss_pred             CCCCCHHHHHHHHHHh---------cCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCC
Q 021156          167 NGQMDLERLKDLVRVV---------GKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDV  237 (316)
Q Consensus       167 ~~~~~~eli~ei~~~~---------G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~  237 (316)
                      +    +..+-+..+.+         | -++.+++...                   ++.+.++.+. .+++.+++..++.
T Consensus       105 ~----~~~~i~~i~~~~~~~~~~~~g-~~~gv~l~p~-------------------Tp~~~l~~~l-~~~D~vlvMsv~p  159 (237)
T 3cu2_A          105 D----FALTIEWLAKQKTTYANQVYP-VLIGACLCPE-------------------TPISELEPYL-DQIDVIQLLTLDP  159 (237)
T ss_dssp             S----HHHHHHHHTTCEEEETTEEEE-CEEEEEECTT-------------------SCGGGGTTTT-TTCSEEEEESEET
T ss_pred             c----HHHHHHHHHhcccccccccCC-ceEEEEEeCC-------------------ChHHHHHHHh-hcCceeeeeeecc
Confidence            3    44333333444         4 2333333111                   1122222332 2689887765543


Q ss_pred             c--cccCCC-CHHHHHHHhhcC-----CCcEEEEeCCCCHHHHHHHHH--hCCCcCEEEEccchhhccCcccHHHHHHHH
Q 021156          238 E--GKKLGI-DDELVALLGKYS-----PIPVTYAGGVTTMADLEKIKV--AGIGRVDVTVGSALDIFGGNLAYKDVVAWH  307 (316)
Q Consensus       238 d--G~~~G~-d~eli~~l~~~~-----~iPVIasGGI~s~eDi~~l~~--~G~g~~gVivG~Al~~~~g~~~~~~~~~~~  307 (316)
                      -  |....+ .++.++++++..     ++|+.+-|||. .+.+..+.+  .|  ++.+++|||+  |..  ++++..+.+
T Consensus       160 gfggq~f~~~~l~ki~~lr~~~~~~~~~~~I~vdGGI~-~~~~~~~~~~~aG--ad~~VvGSaI--f~~--d~~~~~~~l  232 (237)
T 3cu2_A          160 RNGTKYPSELILDRVIQVEKRLGNRRVEKLINIDGSMT-LELAKYFKQGTHQ--IDWLVSGSAL--FSG--ELKTNLKVW  232 (237)
T ss_dssp             TTTEECCHHHHHHHHHHHHHHHGGGGGGCEEEEESSCC-HHHHHHHHHSSSC--CCCEEECGGG--GSS--CHHHHHHHH
T ss_pred             CcCCeecChhHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHHhCCC--CcEEEEeeHH--hCC--CHHHHHHHH
Confidence            1  221111 355666666554     58999999998 689999999  88  9999999999  864  566655544


Q ss_pred             H
Q 021156          308 A  308 (316)
Q Consensus       308 ~  308 (316)
                      +
T Consensus       233 ~  233 (237)
T 3cu2_A          233 K  233 (237)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}

Probab=98.17  E-value=8.4e-06  Score=72.40  Aligned_cols=128  Identities=12%  Similarity=0.127  Sum_probs=78.0

Q ss_pred             HHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHH---HHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHH
Q 021156          147 SLSYIEEGATHVIVTSYVFNNGQMDLERLKDLV---RVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFL  223 (316)
Q Consensus       147 ~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~---~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~  223 (316)
                      ++.+.++|||.|+++-+-+..   ..+.+++..   ..+| -.+++++.-                     . +..+++.
T Consensus        75 ~~~~~~~Gad~Vll~~ser~l---~~~e~~~~~~~a~~~G-l~~iv~v~~---------------------~-~e~~~~~  128 (219)
T 2h6r_A           75 AEAIKDCGCKGTLINHSEKRM---LLADIEAVINKCKNLG-LETIVCTNN---------------------I-NTSKAVA  128 (219)
T ss_dssp             HHHHHHHTCCEEEESBTTBCC---BHHHHHHHHHHHHHHT-CEEEEEESS---------------------S-HHHHHHT
T ss_pred             HHHHHHcCCCEEEECCccccC---CHHHHHHHHHHHHHCC-CeEEEEeCC---------------------c-hHHHHHH
Confidence            889999999999997652221   133344443   3344 222333311                     0 1234555


Q ss_pred             HcCCCEEEEeecCCcccc---CC--CC-HH-HHHHHhhcC-CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhcc
Q 021156          224 ASYADEFLVHGVDVEGKK---LG--ID-DE-LVALLGKYS-PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFG  295 (316)
Q Consensus       224 ~~Ga~~ilvtdi~~dG~~---~G--~d-~e-li~~l~~~~-~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~  295 (316)
                      +.+.+.+-|+.++.-||.   +-  +| .+ ..+.+++.. ++|++++|||++.+++..+.+.|  ++|++||+|+  +.
T Consensus       129 ~~~~~~i~~~~~~~iGtG~~~~t~~~~~~~~~~~~ir~~~~~~~ii~ggGI~~~~~~~~~~~~g--aDgvlVGsAi--~~  204 (219)
T 2h6r_A          129 ALSPDCIAVEPPELIGTGIPVSKANPEVVEGTVRAVKEINKDVKVLCGAGISKGEDVKAALDLG--AEGVLLASGV--VK  204 (219)
T ss_dssp             TTCCSEEEECCCC--------------CSHHHHHHHHHHCTTCEEEECSSCCSHHHHHHHHTTT--CCCEEESHHH--HT
T ss_pred             hCCCCEEEEEeccccccCCCCccCCHHHHHHHHHHHHhccCCCeEEEEeCcCcHHHHHHHhhCC--CCEEEEcHHH--hC
Confidence            667887778888765654   22  23 33 334444444 78999999999999999999988  9999999999  64


Q ss_pred             CcccHHHHHH
Q 021156          296 GNLAYKDVVA  305 (316)
Q Consensus       296 g~~~~~~~~~  305 (316)
                       .-++.++.+
T Consensus       205 -~~d~~~~~~  213 (219)
T 2h6r_A          205 -AKNVEEAIR  213 (219)
T ss_dssp             -CSSHHHHHH
T ss_pred             -cccHHHHHH
Confidence             334555543

>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}

Probab=98.17  E-value=6.8e-07  Score=77.93  Aligned_cols=107  Identities=8%  Similarity=-0.012  Sum_probs=74.9

Q ss_pred             eecCCCCCCccccccccccCcccccccccEEEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHc
Q 021156           26 WLHKNNNSSFYAPSSSLSRPSRLSVRCAVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKED  105 (316)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~  105 (316)
                      |-.++||+.+|++|+. ..+.  .+++.+..||.+.+.|....                           ....+...+.
T Consensus        77 L~~~~~pdGIIsTk~~-~i~~--Ak~~gL~tIqR~FliDS~al---------------------------~~~~~~i~~~  126 (192)
T 3kts_A           77 LCTEICPDGIISTRGN-AIMK--AKQHKMLAIQRLFMIDSSAY---------------------------NKGVALIQKV  126 (192)
T ss_dssp             HHHTTCCSEEEESCHH-HHHH--HHHTTCEEEEEEECCSHHHH---------------------------HHHHHHHHHH
T ss_pred             HHhCCCCCEEEeCcHH-HHHH--HHHCCCeEEEEEEEEEcchH---------------------------HHHHHHHhhc
Confidence            3347899999999999 7777  49999999999777552211                           1122223333


Q ss_pred             CCCcceEEEecCCcccHHHHHHHHH-hCCCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeeecC
Q 021156          106 GLTGGHAIMLGADPLSKAAAIEALH-AYPGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFNN  167 (316)
Q Consensus       106 G~~~l~lvDLda~~~~~~~i~~~v~-~~~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~~~  167 (316)
                      ..+-+  =.|.|   ..+.+++.++ .+++|+++||+||+ ||+++++++||+.|+.++..+-+
T Consensus       127 ~PD~i--EiLPG---i~p~iI~~i~~~~~~PiIaGGlI~~~edv~~al~aGA~aVsTs~~~LW~  185 (192)
T 3kts_A          127 QPDCI--ELLPG---IIPEQVQKMTQKLHIPVIAGGLIETSEQVNQVIASGAIAVTTSNKHLWE  185 (192)
T ss_dssp             CCSEE--EEECT---TCHHHHHHHHHHHCCCEEEESSCCSHHHHHHHHTTTEEEEEECCGGGGT
T ss_pred             CCCEE--EECCc---hhHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCeEEEeCCHHHhC
Confidence            44422  22333   2235666654 68999999999995 99999999999999999876543

>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*

Probab=98.16  E-value=6e-06  Score=79.28  Aligned_cols=75  Identities=24%  Similarity=0.213  Sum_probs=62.2

Q ss_pred             HHHHHHHHHcCCCEEEE--eec-CCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchh
Q 021156          216 DERVLDFLASYADEFLV--HGV-DVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALD  292 (316)
Q Consensus       216 ~e~a~~~~~~Ga~~ilv--tdi-~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~  292 (316)
                      .+.++.+.+.|++.|.+  |.- ..|+  ..++++.+.++++.+++|||++|||++.+|+.+++.+|  +++|++|+++ 
T Consensus       236 ~e~a~~a~~aGad~I~vs~~gg~~~d~--~~~~~~~l~~v~~~~~~pVia~GGI~~~~dv~kal~~G--AdaV~iGr~~-  310 (380)
T 1p4c_A          236 AEDADRCIAEGADGVILSNHGGRQLDC--AISPMEVLAQSVAKTGKPVLIDSGFRRGSDIVKALALG--AEAVLLGRAT-  310 (380)
T ss_dssp             HHHHHHHHHTTCSEEEECCGGGTSCTT--CCCGGGTHHHHHHHHCSCEEECSSCCSHHHHHHHHHTT--CSCEEESHHH-
T ss_pred             HHHHHHHHHcCCCEEEEcCCCCCcCCC--CcCHHHHHHHHHHHcCCeEEEECCCCCHHHHHHHHHhC--CcHhhehHHH-
Confidence            47899999999999988  321 1122  22488999999888888999999999999999999998  9999999999 


Q ss_pred             hccC
Q 021156          293 IFGG  296 (316)
Q Consensus       293 ~~~g  296 (316)
                       +.+
T Consensus       311 -l~~  313 (380)
T 1p4c_A          311 -LYG  313 (380)
T ss_dssp             -HHH
T ss_pred             -HHH
Confidence             654

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=98.16  E-value=1.7e-05  Score=82.02  Aligned_cols=149  Identities=16%  Similarity=0.073  Sum_probs=101.2

Q ss_pred             HHHHHHHHcCCCEEEeCCee--------------ecC---------CCCCHHHHHHHHHHhcCce-EEEeeeeeecCCee
Q 021156          145 DNSLSYIEEGATHVIVTSYV--------------FNN---------GQMDLERLKDLVRVVGKQR-LVLDLSCRKKDGKY  200 (316)
Q Consensus       145 e~~~~~l~~Gad~VVigt~~--------------~~~---------~~~~~eli~ei~~~~G~~~-IvvslD~k~~~g~~  200 (316)
                      +.++++.++|+|-|=|..+-              ++|         .++..|.++.+.+.+|++. |.+-+...  +.  
T Consensus       153 ~aA~~a~~aGfDgVEih~a~gyLl~qFlsp~~N~R~D~yGGs~enR~r~~~eiv~avr~~vg~~~pv~vrls~~--~~--  228 (729)
T 1o94_A          153 DAAKRSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVD--TV--  228 (729)
T ss_dssp             HHHHHHHHTTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHTTTSEEEEEEEEE--CS--
T ss_pred             HHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCcCcCCCCHHHHhHHHHHHHHHHHHHhCCCceEEEEEccc--cC--
Confidence            34667778999998884322              111         1234577777777787664 33333221  10  


Q ss_pred             EEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecC---Ccc-----c--cCCCCHHHHHHHhhcCCCcEEEEeCCCCHH
Q 021156          201 AIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVD---VEG-----K--KLGIDDELVALLGKYSPIPVTYAGGVTTMA  270 (316)
Q Consensus       201 ~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~---~dG-----~--~~G~d~eli~~l~~~~~iPVIasGGI~s~e  270 (316)
                       +.-.||..  ..+..++++.+++ +++.+-++...   ..+     .  ..++++++++++++.+++|||++||+.+++
T Consensus       229 -~~~~G~~~--~~~~~~~~~~l~~-~~d~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pvi~~G~i~~~~  304 (729)
T 1o94_A          229 -YGPGQIEA--EVDGQKFVEMADS-LVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVSKKPVLGVGRYTDPE  304 (729)
T ss_dssp             -SCTTSCCT--TTHHHHHHHHHGG-GCSEEEEEECCSTTGGGTSCCTTTCCTTTTHHHHHHHHTTCSSCEECCSCCCCHH
T ss_pred             -cCCCCCCc--hHHHHHHHHHHHh-hcCEEEEeeecccccccccCCccccCccccHHHHHHHHHHCCCEEEEeCCCCCHH
Confidence             00124441  1246778888877 78877666542   111     1  134478999999999999999999999999


Q ss_pred             HHHHHHHhCCCcCEEEEccchhhccCcccHHHHH
Q 021156          271 DLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVV  304 (316)
Q Consensus       271 Di~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~  304 (316)
                      ++.++++.| +++.|++||++  +.+|..++++.
T Consensus       305 ~a~~~l~~g-~aD~V~~gR~~--l~~P~~~~~~~  335 (729)
T 1o94_A          305 KMIEIVTKG-YADIIGCARPS--IADPFLPQKVE  335 (729)
T ss_dssp             HHHHHHHTT-SCSBEEESHHH--HHCTTHHHHHH
T ss_pred             HHHHHHHCC-CCCEEEeCchh--hcCchHHHHHH
Confidence            999999998 59999999999  99998776664

>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*

Probab=98.14  E-value=1.3e-05  Score=76.19  Aligned_cols=101  Identities=15%  Similarity=0.092  Sum_probs=74.2

Q ss_pred             CCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCC-CC
Q 021156          167 NGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLG-ID  245 (316)
Q Consensus       167 ~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G-~d  245 (316)
                      ++.++++.++.+.+..+ -.++    +|      .+           ...+.++.+.+.|++.|+++.-..-+...+ +.
T Consensus       201 d~~~~w~~i~~lr~~~~-~Pvi----vK------~v-----------~~~e~A~~a~~~GaD~I~vsn~GG~~~d~~~~~  258 (352)
T 3sgz_A          201 KASFCWNDLSLLQSITR-LPII----LK------GI-----------LTKEDAELAMKHNVQGIVVSNHGGRQLDEVSAS  258 (352)
T ss_dssp             CTTCCHHHHHHHHHHCC-SCEE----EE------EE-----------CSHHHHHHHHHTTCSEEEECCGGGTSSCSSCCH
T ss_pred             CCCCCHHHHHHHHHhcC-CCEE----EE------ec-----------CcHHHHHHHHHcCCCEEEEeCCCCCccCCCccH
Confidence            34566788888887763 2222    22      01           124779999999999999855211111123 47


Q ss_pred             HHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          246 DELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       246 ~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      ++.+.++.+.+  ++|||++|||++.+|+.+++.+|  +++|++|+++
T Consensus       259 ~~~L~~i~~av~~~ipVia~GGI~~g~Dv~kaLalG--A~aV~iGr~~  304 (352)
T 3sgz_A          259 IDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALG--ARCIFLGRPI  304 (352)
T ss_dssp             HHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTT--CSEEEESHHH
T ss_pred             HHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcC--CCEEEECHHH
Confidence            89999987766  79999999999999999999998  9999999998

>3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus}

Probab=98.11  E-value=5.3e-06  Score=80.67  Aligned_cols=86  Identities=9%  Similarity=0.055  Sum_probs=69.2

Q ss_pred             CHHHHHHHHHH-cCCCEEEEeecCCc-----cccCC--CCHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcC
Q 021156          214 YLDERVLDFLA-SYADEFLVHGVDVE-----GKKLG--IDDELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRV  283 (316)
Q Consensus       214 ~~~e~a~~~~~-~Ga~~ilvtdi~~d-----G~~~G--~d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~  283 (316)
                      +..++++.+++ .|++.|-++..+.+     ....|  .+++.++.+++.+  ++|||++|||.+++++.++++.   ++
T Consensus       265 d~~~la~~L~~~~Gvd~I~vs~g~~~~~~~~~~~~g~~~~~~~a~~Ik~~v~~~iPVI~~GgI~t~e~Ae~~L~~---aD  341 (419)
T 3l5a_A          265 EFNQLIDWVMDVSNIQYLAIASWGRHIYQNTSRTPGDHFGRPVNQIVYEHLAGRIPLIASGGINSPESALDALQH---AD  341 (419)
T ss_dssp             HHHHHHHHHHHHSCCCCEEECCTTCCGGGCBCCCSSTTTTSBHHHHHHHHHTTSSCEEECSSCCSHHHHHHHGGG---CS
T ss_pred             HHHHHHHHHHhhcCCcEEEEeeCCccccccccCCCCccccHHHHHHHHHHcCCCCeEEEECCCCCHHHHHHHHHh---CC
Confidence            46789999999 99998887775431     11223  3667888888766  6999999999999999999987   79


Q ss_pred             EEEEccchhhccCcccHHHHH
Q 021156          284 DVTVGSALDIFGGNLAYKDVV  304 (316)
Q Consensus       284 gVivG~Al~~~~g~~~~~~~~  304 (316)
                      .|++||++  +.+|..++++.
T Consensus       342 lVaiGR~~--IanPdlv~ki~  360 (419)
T 3l5a_A          342 MVGMSSPF--VTEPDFVHKLA  360 (419)
T ss_dssp             EEEESTHH--HHCTTHHHHHH
T ss_pred             cHHHHHHH--HHCcHHHHHHH
Confidence            99999999  99997776664

>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*

Probab=98.10  E-value=1.5e-05  Score=75.47  Aligned_cols=87  Identities=17%  Similarity=0.063  Sum_probs=70.6

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEe--cC-----CcccHHHHHHHH-HhCCCcEEEecCCC-HHHHHHHHHcC-CCEEEeCC
Q 021156           93 KSAAEFANLYKEDGLTGGHAIML--GA-----DPLSKAAAIEAL-HAYPGGLQVGGGIN-SDNSLSYIEEG-ATHVIVTS  162 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDL--da-----~~~~~~~i~~~v-~~~~~pl~vGGGIr-~e~~~~~l~~G-ad~VVigt  162 (316)
                      .++.++|+.++++|++.+|+.+=  ..     .+..+....+.+ +.+++|+++.|||+ .++++++++.| ||.|.+|+
T Consensus       229 ~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~iPVi~~GgI~s~e~a~~~L~~G~aD~V~iGR  308 (340)
T 3gr7_A          229 KDYVPYAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQVPFAELIRREADIPTGAVGLITSGWQAEEILQNGRADLVFLGR  308 (340)
T ss_dssp             GGHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHTTCCEEEESSCCCHHHHHHHHHTTSCSEEEECH
T ss_pred             HHHHHHHHHHHHcCCCEEEEecCCccCCCCCCCccccHHHHHHHHHHcCCcEEeeCCCCCHHHHHHHHHCCCeeEEEecH
Confidence            57899999999999999998752  11     111123333444 46899999999998 59999999999 99999999


Q ss_pred             eeecCCCCCHHHHHHHHHHhc
Q 021156          163 YVFNNGQMDLERLKDLVRVVG  183 (316)
Q Consensus       163 ~~~~~~~~~~eli~ei~~~~G  183 (316)
                      .++.|    |++++++.+.+|
T Consensus       309 ~~lan----Pdl~~ki~~~l~  325 (340)
T 3gr7_A          309 ELLRN----PYWPYAAARELG  325 (340)
T ss_dssp             HHHHC----TTHHHHHHHHTT
T ss_pred             HHHhC----chHHHHHHHHCC
Confidence            99998    999999999987

>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.10  E-value=2.3e-06  Score=75.33  Aligned_cols=153  Identities=15%  Similarity=0.046  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHH----hCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCC
Q 021156           95 AAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALH----AYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQM  170 (316)
Q Consensus        95 p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~----~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~  170 (316)
                      ..+.++...+.|++.+++.+=+   .+.....+.++    ..++++.+-     ++++.+.++|++.|-+|......   
T Consensus        15 ~~~~~~~a~~~Gv~~v~lr~k~---~~~~~~~~~i~~l~~~~~~~livn-----d~~~~A~~~gadgvhl~~~~~~~---   83 (210)
T 3ceu_A           15 EDKIITALFEEGLDILHLRKPE---TPAMYSERLLTLIPEKYHRRIVTH-----EHFYLKEEFNLMGIHLNARNPSE---   83 (210)
T ss_dssp             HHHHHHHHHHTTCCEEEECCSS---CCHHHHHHHHHHSCGGGGGGEEES-----SCTTHHHHTTCSEEECCSSSCSC---
T ss_pred             HHHHHHHHHHCCCCEEEEccCC---CCHHHHHHHHHHHHHHhCCeEEEe-----CCHHHHHHcCCCEEEECcccccc---
Confidence            3567777778899888777322   22333333333    345667663     55778888999999887654432   


Q ss_pred             CHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeec----CCccccCCCCH
Q 021156          171 DLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGV----DVEGKKLGIDD  246 (316)
Q Consensus       171 ~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi----~~dG~~~G~d~  246 (316)
                       +.       ..   ..++++++.                   ++.| +..+. .|++.+.+..+    +..|.....++
T Consensus        84 -~~-------~~---~~~ig~s~~-------------------t~~e-~~~A~-~GaDyv~~g~vf~t~sk~~~~~~~g~  131 (210)
T 3ceu_A           84 -PH-------DY---AGHVSCSCH-------------------SVEE-VKNRK-HFYDYVFMSPIYDSISKVNYYSTYTA  131 (210)
T ss_dssp             -CT-------TC---CSEEEEEEC-------------------SHHH-HHTTG-GGSSEEEECCCC---------CCCCH
T ss_pred             -cc-------cc---CCEEEEecC-------------------CHHH-HHHHh-hCCCEEEECCcCCCCCCCCCCCCCCH
Confidence             11       01   123444442                   2333 45555 89999875443    23333334689


Q ss_pred             HHHHHHhhc--CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhcc
Q 021156          247 ELVALLGKY--SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFG  295 (316)
Q Consensus       247 eli~~l~~~--~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~  295 (316)
                      +.++++++.  .++||++.|||. ++++.++++.|  ++||.+++++  +.
T Consensus       132 ~~l~~~~~~~~~~iPviaiGGI~-~~nv~~~~~~G--a~gVav~s~i--~~  177 (210)
T 3ceu_A          132 EELREAQKAKIIDSKVMALGGIN-EDNLLEIKDFG--FGGAVVLGDL--WN  177 (210)
T ss_dssp             HHHHHHHHTTCSSTTEEEESSCC-TTTHHHHHHTT--CSEEEESHHH--HT
T ss_pred             HHHHHHHHhcCCCCCEEEECCCC-HHHHHHHHHhC--CCEEEEhHHh--Hc
Confidence            999999876  689999999998 89999999988  9999999999  54

>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}

Probab=98.09  E-value=0.00014  Score=66.88  Aligned_cols=164  Identities=17%  Similarity=0.082  Sum_probs=110.1

Q ss_pred             CHHHHHHHHHHcCCCcceEEEec---CCcccHHHHHHHHHhCCCcEEE-----ecCCC-H--------HHHHHHHHcCCC
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLG---ADPLSKAAAIEALHAYPGGLQV-----GGGIN-S--------DNSLSYIEEGAT  156 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLd---a~~~~~~~i~~~v~~~~~pl~v-----GGGIr-~--------e~~~~~l~~Gad  156 (316)
                      ++. -|..-.+.|++++++-|=-   +..+....+..+.+.+++|+.+     ||.+- +        +|++.+.++|||
T Consensus        48 s~~-~a~~A~~gGAdRIELc~~l~~GGlTPS~g~i~~a~~~~~ipV~vMIRPRgGdF~Ys~~E~~~M~~dI~~~~~~GAd  126 (287)
T 3iwp_A           48 SVE-SAVNAERGGADRIELCSGLSEGGTTPSMGVLQVVKQSVQIPVFVMIRPRGGDFLYSDREIEVMKADIRLAKLYGAD  126 (287)
T ss_dssp             SHH-HHHHHHHHTCSEEEECBCGGGTCBCCCHHHHHHHHTTCCSCEEEECCSSSSCSCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred             CHH-HHHHHHHhCCCEEEECCCCCCCCCCCCHHHHHHHHHhcCCCeEEEEecCCCCcccCHHHHHHHHHHHHHHHHcCCC
Confidence            554 4445566799999998521   1234455554444557788876     77774 3        578888999999


Q ss_pred             EEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecC
Q 021156          157 HVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVD  236 (316)
Q Consensus       157 ~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~  236 (316)
                      -||+|.... ++++|.+..+++.+..+.    +.+.+          ...+...  .++.+..+.+.++|+++|+.+.- 
T Consensus       127 GvVfG~L~~-dg~iD~~~~~~Li~~a~~----l~vTF----------HRAFD~~--~d~~~Ale~Li~lGvdrILTSG~-  188 (287)
T 3iwp_A          127 GLVFGALTE-DGHIDKELCMSLMAICRP----LPVTF----------HRAFDMV--HDPMAALETLLTLGFERVLTSGC-  188 (287)
T ss_dssp             EEEECCBCT-TSCBCHHHHHHHHHHHTT----SCEEE----------CGGGGGC--SCHHHHHHHHHHHTCSEEEECTT-
T ss_pred             EEEEeeeCC-CCCcCHHHHHHHHHHcCC----CcEEE----------ECchhcc--CCHHHHHHHHHHcCCCEEECCCC-
Confidence            999998653 467889999999987753    12222          1222221  25778888999999999985332 


Q ss_pred             CccccCCCCHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHH-hC
Q 021156          237 VEGKKLGIDDELVALLGKYS--PIPVTYAGGVTTMADLEKIKV-AG  279 (316)
Q Consensus       237 ~dG~~~G~d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~-~G  279 (316)
                      ....  --.++.++++.+..  +++|.++|||+. +.+.++.+ .|
T Consensus       189 ~~~a--~~Gl~~Lk~Lv~~a~~rI~ImaGGGV~~-~Ni~~l~~~tG  231 (287)
T 3iwp_A          189 DSSA--LEGLPLIKRLIEQAKGRIVVMPGGGITD-RNLQRILEGSG  231 (287)
T ss_dssp             SSST--TTTHHHHHHHHHHHTTSSEEEECTTCCT-TTHHHHHHHHC
T ss_pred             CCCh--HHhHHHHHHHHHHhCCCCEEEECCCcCH-HHHHHHHHhhC
Confidence            2222  22677888886543  589999999987 56777776 56

>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2

Probab=98.09  E-value=0.00012  Score=65.44  Aligned_cols=181  Identities=15%  Similarity=0.097  Sum_probs=116.9

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCc-cc---HHHHHHHHHh-C-CCcEEEecCCC-HHH-HHHHHHcCCCEEEeCCeee
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADP-LS---KAAAIEALHA-Y-PGGLQVGGGIN-SDN-SLSYIEEGATHVIVTSYVF  165 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~-~~---~~~i~~~v~~-~-~~pl~vGGGIr-~e~-~~~~l~~Gad~VVigt~~~  165 (316)
                      +-.+..+...+.|++++|+=-+|+.. +|   -..+++.+++ + +.|+.+-==+. .+. ++.+.+  ||.+.+-.+..
T Consensus        19 ~l~~~i~~~~~~g~d~iHvDvmDg~fvpn~t~G~~~v~~lr~~~p~~~~dvhLmv~dp~~~i~~~~~--Ad~itvH~ea~   96 (227)
T 1tqx_A           19 KLAEETQRMESLGAEWIHLDVMDMHFVPNLSFGPPVINNLKKYTKSIFFDVHLMVEYPEKYVPLLKT--SNQLTFHFEAL   96 (227)
T ss_dssp             GHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCCCHHHHHHHGGGCSSCEEEEEEESSCGGGGGGGCTT--SSEEEEEGGGG
T ss_pred             hHHHHHHHHHHcCCCEEEEEEEeCCcCcchhcCHHHHHHHHHhCCCCcEEEEEEEcCHHHHHHHHHh--CCEEEEeecCC
Confidence            34456666777899999988888762 12   1345566664 4 57776666565 343 444444  88887755554


Q ss_pred             c-CCCCCHHHHHH---HHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcC-CCEEEEeecCCc--
Q 021156          166 N-NGQMDLERLKD---LVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASY-ADEFLVHGVDVE--  238 (316)
Q Consensus       166 ~-~~~~~~eli~e---i~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~G-a~~ilvtdi~~d--  238 (316)
                      . +    +...-+   ..+.+| -++.+++..    +               ++.+.++.+.+.| ++.+++..+..-  
T Consensus        97 ~~~----~~~~i~~~~~i~~~G-~k~gvalnp----~---------------tp~~~~~~~l~~g~~D~VlvmsV~pGf~  152 (227)
T 1tqx_A           97 NED----TERCIQLAKEIRDNN-LWCGISIKP----K---------------TDVQKLVPILDTNLINTVLVMTVEPGFG  152 (227)
T ss_dssp             TTC----HHHHHHHHHHHHTTT-CEEEEEECT----T---------------SCGGGGHHHHTTTCCSEEEEESSCTTCS
T ss_pred             ccC----HHHHHHHHHHHHHcC-CeEEEEeCC----C---------------CcHHHHHHHhhcCCcCEEEEeeeccCCC
Confidence            3 3    544444   445666 344444421    1               2345667777776 999998887652  


Q ss_pred             cccCCC-CHHHHHHHhhcC-CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHH
Q 021156          239 GKKLGI-DDELVALLGKYS-PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAW  306 (316)
Q Consensus       239 G~~~G~-d~eli~~l~~~~-~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~  306 (316)
                      |..-.+ .++.++++++.. ++++.+-|||. .+.+..+.++|  ++.+++||++  |..+ ++++..+.
T Consensus       153 gq~f~~~~l~ki~~lr~~~~~~~I~VdGGI~-~~ti~~~~~aG--Ad~~V~GsaI--f~~~-d~~~~i~~  216 (227)
T 1tqx_A          153 GQSFMHDMMGKVSFLRKKYKNLNIQVDGGLN-IETTEISASHG--ANIIVAGTSI--FNAE-DPKYVIDT  216 (227)
T ss_dssp             SCCCCGGGHHHHHHHHHHCTTCEEEEESSCC-HHHHHHHHHHT--CCEEEESHHH--HTCS-SHHHHHHH
T ss_pred             CcccchHHHHHHHHHHHhccCCeEEEECCCC-HHHHHHHHHcC--CCEEEEeHHH--hCCC-CHHHHHHH
Confidence            222222 467788887765 78999999998 68999999999  8999999999  7542 24444443

>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*

Probab=98.08  E-value=7.9e-05  Score=74.64  Aligned_cols=165  Identities=15%  Similarity=0.024  Sum_probs=113.6

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCccc----HHHHHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCC
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADPLS----KAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQ  169 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~~~----~~~i~~~v~~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~  169 (316)
                      +..+.++...+.|++.+|+=+=+.....    -..+.+++++.++|+++-.     +++-+++.|||.|=+|.....   
T Consensus        26 ~l~~~ve~al~~Gv~~vQlR~K~~~~~~~~~~a~~l~~l~~~~~v~liIND-----~~dlA~~~gAdGVHLgq~dl~---   97 (540)
T 3nl6_A           26 TLYGQVEAGLQNGVTLVQIREKDADTKFFIEEALQIKELCHAHNVPLIIND-----RIDVAMAIGADGIHVGQDDMP---   97 (540)
T ss_dssp             CHHHHHHHHHHTTCSEEEECCSSSCTTHHHHHHHHHHHHHHHTTCCEEECS-----CSHHHHHTTCSEEEECTTSSC---
T ss_pred             hHHHHHHHHHHCCCCEEEEecCCCCHHHHHHHHHHHHHHHHhcCCEEEEeC-----cHHHHHHcCCCEEEEChhhcC---
Confidence            5667888888889988888766654321    2234455566789999864     456677889999988875433   


Q ss_pred             CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcC---CCEEEEeecCCccccCC---
Q 021156          170 MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASY---ADEFLVHGVDVEGKKLG---  243 (316)
Q Consensus       170 ~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~G---a~~ilvtdi~~dG~~~G---  243 (316)
                        .   .++.+.+|++.+ +++.+.                   + .+.+++..+.|   ++.+.+-.+-...+..+   
T Consensus        98 --~---~~ar~~lg~~~i-iG~S~h-------------------t-~eea~~A~~~G~~~aDYv~~Gpvf~T~tK~~~~~  151 (540)
T 3nl6_A           98 --I---PMIRKLVGPDMV-IGWSVG-------------------F-PEEVDELSKMGPDMVDYIGVGTLFPTLTKKNPKK  151 (540)
T ss_dssp             --H---HHHHHHHCTTSE-EEEEEC-------------------S-HHHHHHHHHTCC--CCEEEESCCSCCCCCC----
T ss_pred             --H---HHHHHHhCCCCE-EEEECC-------------------C-HHHHHHHHHcCCCCCCEEEEcCCCCCCCCCCcCC
Confidence              3   344444555543 666663                   2 35567788889   99988755533333332   


Q ss_pred             --CCHHHHHHHhhc------CCCcEEEEeCCCCHHHHHHHHHh----C--CCcCEEEEccchhhcc
Q 021156          244 --IDDELVALLGKY------SPIPVTYAGGVTTMADLEKIKVA----G--IGRVDVTVGSALDIFG  295 (316)
Q Consensus       244 --~d~eli~~l~~~------~~iPVIasGGI~s~eDi~~l~~~----G--~g~~gVivG~Al~~~~  295 (316)
                        ..++.++++.+.      .++|+++-||| +.+++.++++.    |  .|+++|.+++++  +.
T Consensus       152 ~~~G~~~l~~i~~~~~~~~~~~iPvvAIGGI-~~~ni~~v~~~~~~~g~~~GadgvAVvsaI--~~  214 (540)
T 3nl6_A          152 APMGTAGAIRVLDALERNNAHWCRTVGIGGL-HPDNIERVLYQCVSSNGKRSLDGICVVSDI--IA  214 (540)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCTTCEEEEESSC-CTTTHHHHHHHCBCTTSSCBCSCEEESHHH--HT
T ss_pred             CCCCHHHHHHHHHHHHhhccCCCCEEEEcCC-CHHHHHHHHHhhcccccccCceEEEEeHHH--hc
Confidence              347778877654      48999999999 78999999982    1  249999999999  64

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=98.03  E-value=3.9e-05  Score=76.17  Aligned_cols=174  Identities=17%  Similarity=0.173  Sum_probs=92.3

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCc---ccHHHHHHHHH-------hCCCcEEEecCC--C--H-HHHHHHHHcCCCEE
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADP---LSKAAAIEALH-------AYPGGLQVGGGI--N--S-DNSLSYIEEGATHV  158 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~---~~~~~i~~~v~-------~~~~pl~vGGGI--r--~-e~~~~~l~~Gad~V  158 (316)
                      ++.+..+.+.+.....+-+||=++.-   .....+.+...       .-...+.||..|  +  . +.++.+.++|+|.+
T Consensus       218 ~leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~~~~p~A~k~d~~grL~VgAAVgv~~d~~eR~~aLv~AGvD~i  297 (556)
T 4af0_A          218 TLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKNQNYPYASKVPESKQLYCGAAIGTRPGDKDRLKLLAEAGLDVV  297 (556)
T ss_dssp             ----------------------------------------CTTCCBCTTTCCBCCEEEECSSHHHHHHHHHHHHTTCCEE
T ss_pred             CHHHHHHHHHHccccceeEEccCCcEEEEEEechhhhhhhCCcchhcchhhceeeEEEeccCccHHHHHHHHHhcCCcEE
Confidence            34455555556667777777755420   11111111111       011245566655  4  2 55889999999999


Q ss_pred             EeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEe-----
Q 021156          159 IVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVH-----  233 (316)
Q Consensus       159 Vigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvt-----  233 (316)
                      +|.++--.. +.-.+.++.+.+.|+ +-.++.=.+                    -..+-++.+.+.|++.+.+-     
T Consensus       298 viD~ahGhs-~~v~~~i~~ik~~~p-~~~viaGNV--------------------aT~e~a~~Li~aGAD~vkVGiGpGS  355 (556)
T 4af0_A          298 VLDSSQGNS-VYQIEFIKWIKQTYP-KIDVIAGNV--------------------VTREQAAQLIAAGADGLRIGMGSGS  355 (556)
T ss_dssp             EECCSCCCS-HHHHHHHHHHHHHCT-TSEEEEEEE--------------------CSHHHHHHHHHHTCSEEEECSSCST
T ss_pred             EEecccccc-HHHHHHHHHHHhhCC-cceEEeccc--------------------cCHHHHHHHHHcCCCEEeecCCCCc
Confidence            999875332 112567777777773 333222222                    23478889999999987531     


Q ss_pred             -ecCCccccCCC-CHHHHHHH---hhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          234 -GVDVEGKKLGI-DDELVALL---GKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       234 -di~~dG~~~G~-d~eli~~l---~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                       ..+|.-+.-|. -+..+.++   ++..++|||+-|||++.-|+.+++.+|  ++.||+|+.|
T Consensus       356 iCtTr~v~GvG~PQ~tAi~~~a~~a~~~~vpvIADGGI~~sGDi~KAlaaG--Ad~VMlGsll  416 (556)
T 4af0_A          356 ICITQEVMAVGRPQGTAVYAVAEFASRFGIPCIADGGIGNIGHIAKALALG--ASAVMMGGLL  416 (556)
T ss_dssp             TBCCTTTCCSCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTT--CSEEEESTTT
T ss_pred             ccccccccCCCCcHHHHHHHHHHHHHHcCCCEEecCCcCcchHHHHHhhcC--CCEEEEchhh
Confidence             12344344443 44455444   345689999999999999999999999  8999999976

>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A

Probab=97.97  E-value=0.00054  Score=61.98  Aligned_cols=169  Identities=12%  Similarity=0.068  Sum_probs=113.8

Q ss_pred             CHHHHHHHHHHcCCCcceEEE-ec--CCcccHHHHHHHHHhCCCcEEE-----ecCCC-H--------HHHHHHHHcCCC
Q 021156           94 SAAEFANLYKEDGLTGGHAIM-LG--ADPLSKAAAIEALHAYPGGLQV-----GGGIN-S--------DNSLSYIEEGAT  156 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvD-Ld--a~~~~~~~i~~~v~~~~~pl~v-----GGGIr-~--------e~~~~~l~~Gad  156 (316)
                      ++. -|..-.+.|++++-|.+ |.  +..+....+..+.+.+++|+.|     ||+.- +        +|++.+.++|++
T Consensus        10 s~~-~a~~A~~~GAdRIELc~~L~~GGlTPS~g~i~~~~~~~~ipv~vMIRPR~GdF~Ys~~E~~~M~~Di~~~~~~Gad   88 (256)
T 1twd_A           10 SME-CALTAQQNGADRVELCAAPKEGGLTPSLGVLKSVRQRVTIPVHPIIRPRGGDFCYSDGEFAAILEDVRTVRELGFP   88 (256)
T ss_dssp             SHH-HHHHHHHTTCSEEEECBCGGGTCBCCCHHHHHHHHHHCCSCEEEBCCSSSSCSCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred             CHH-HHHHHHHcCCCEEEEcCCcccCCCCCCHHHHHHHHHHcCCceEEEECCCCCCCcCCHHHHHHHHHHHHHHHHcCCC
Confidence            454 44555567999999886 33  2246666666666678888877     88884 2        267778889999


Q ss_pred             EEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecC
Q 021156          157 HVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVD  236 (316)
Q Consensus       157 ~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~  236 (316)
                      -||+|.... +|++|.+.++++.+..++-.+.              +.+.+...  .++.+..+.+.++|+++|+ |+=.
T Consensus        89 GvV~G~Lt~-dg~iD~~~~~~Li~~a~~~~vT--------------FHRAfD~~--~d~~~ale~L~~lG~~rIL-TSG~  150 (256)
T 1twd_A           89 GLVTGVLDV-DGNVDMPRMEKIMAAAGPLAVT--------------FHRAFDMC--ANPLYTLNNLAELGIARVL-TSGQ  150 (256)
T ss_dssp             EEEECCBCT-TSSBCHHHHHHHHHHHTTSEEE--------------ECGGGGGC--SCHHHHHHHHHHHTCCEEE-ECTT
T ss_pred             EEEEeeECC-CCCcCHHHHHHHHHHhCCCcEE--------------EECchhcc--CCHHHHHHHHHHcCCCEEE-CCCC
Confidence            999999764 4789999999999876532221              11222221  3677888999999999998 4422


Q ss_pred             CccccCCCCHHHHHHHhhcC-CCcEEEEeCCCCHHHHHHHHHhCCCcCEEE
Q 021156          237 VEGKKLGIDDELVALLGKYS-PIPVTYAGGVTTMADLEKIKVAGIGRVDVT  286 (316)
Q Consensus       237 ~dG~~~G~d~eli~~l~~~~-~iPVIasGGI~s~eDi~~l~~~G~g~~gVi  286 (316)
                      .....  -..+.++++.+.. .+.|+++|||+. +.+.++.+.|  +..+=
T Consensus       151 ~~~a~--~g~~~L~~Lv~~a~~i~Im~GgGv~~-~Ni~~l~~tG--v~e~H  196 (256)
T 1twd_A          151 KSDAL--QGLSKIMELIAHRDAPIIMAGAGVRA-ENLHHFLDAG--VLEVH  196 (256)
T ss_dssp             SSSTT--TTHHHHHHHHTSSSCCEEEEESSCCT-TTHHHHHHHT--CSEEE
T ss_pred             CCCHH--HHHHHHHHHHHhhCCcEEEecCCcCH-HHHHHHHHcC--CCeEe
Confidence            22222  2567888886533 677889999876 5666666666  54443

>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*

Probab=97.97  E-value=1.2e-05  Score=77.41  Aligned_cols=74  Identities=16%  Similarity=0.126  Sum_probs=60.4

Q ss_pred             HHHHHHHHHcCCCEEEEeecCCccccCCC-CHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          216 DERVLDFLASYADEFLVHGVDVEGKKLGI-DDELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       216 ~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~-d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      .+.++.+.+.|++.|.+..-.......|+ +++.+.++++.+  ++|||++|||++.+|+.+++.+|  +++|++|+++
T Consensus       263 ~e~A~~a~~aGad~I~vs~~ggr~~~~g~~~~~~l~~v~~av~~~ipVia~GGI~~g~Dv~kalalG--Ad~V~iGr~~  339 (392)
T 2nzl_A          263 GDDAREAVKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALG--AKAVFVGRPI  339 (392)
T ss_dssp             HHHHHHHHHTTCCEEEECCGGGTSSTTCCCHHHHHHHHHHHHTTSSEEEECSSCCSHHHHHHHHHTT--CSEEEECHHH
T ss_pred             HHHHHHHHHcCCCEEEeCCCCCCcCCCCcChHHHHHHHHHHcCCCCEEEEECCCCCHHHHHHHHHhC--CCeeEECHHH
Confidence            47799999999999988442211122344 788898988765  59999999999999999999998  9999999998

>3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A*

Probab=97.91  E-value=3.4e-05  Score=73.17  Aligned_cols=66  Identities=23%  Similarity=0.097  Sum_probs=51.6

Q ss_pred             cccCCC-CHH----HHHHHhhc-CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHH
Q 021156          239 GKKLGI-DDE----LVALLGKY-SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWH  307 (316)
Q Consensus       239 G~~~G~-d~e----li~~l~~~-~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~  307 (316)
                      |-++|+ .++    .++++.+. .++|||.+|||.|.+|+.+.+.+|  ++.|.|++|+ +|+|+..++++++-+
T Consensus       253 GGlSG~~~~~~a~~~v~~~~~~~~~~pIIg~GGI~s~~Da~e~i~aG--As~Vqv~Ta~-~y~GP~~~~~I~~~L  324 (354)
T 3tjx_A          253 GGLGGRYVLPTALANINAFYRRCPGKLIFGCGGVYTGEDAFLHVLAG--ASMVQVGTAL-QEEGPSIFERLTSEL  324 (354)
T ss_dssp             EEEEGGGGHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHHT--EEEEEECHHH-HHHCTTHHHHHHHHH
T ss_pred             cccCchhhHHHHHHHHHHHHHhcCCCcEEEeCCcCCHHHHHHHHHcC--CCEEEEChhh-hhcCchHHHHHHHHH
Confidence            335565 444    45555444 478999999999999999999998  9999999995 489999888877643

>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*

Probab=97.88  E-value=3.7e-05  Score=72.27  Aligned_cols=74  Identities=22%  Similarity=0.161  Sum_probs=59.4

Q ss_pred             HHHHHHHHHcCCCEEEE--eecC--------Ccc--------ccCC-CCHHHHHHHhhcC-CCcEEEEeCCCCHHHHHHH
Q 021156          216 DERVLDFLASYADEFLV--HGVD--------VEG--------KKLG-IDDELVALLGKYS-PIPVTYAGGVTTMADLEKI  275 (316)
Q Consensus       216 ~e~a~~~~~~Ga~~ilv--tdi~--------~dG--------~~~G-~d~eli~~l~~~~-~iPVIasGGI~s~eDi~~l  275 (316)
                      .+.++.+.+.|++.|.+  |.-+        +..        ...| +.++.+.++++.+ ++|||++|||++.+|+.++
T Consensus       195 ~e~a~~~~~~G~d~I~vs~~ggt~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~v~~~~~~ipvia~GGI~~~~d~~ka  274 (332)
T 1vcf_A          195 REAALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLPHLPLVASGGVYTGTDGAKA  274 (332)
T ss_dssp             HHHHHHHTTSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHCSSSCEEEESSCCSHHHHHHH
T ss_pred             HHHHHHHHHcCCCEEEeCCCCCCcchhHHHhhccccchhhhHhhccccHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHH
Confidence            35688999999999987  3221        210        1234 3688888888877 7999999999999999999


Q ss_pred             HHhCCCcCEEEEccch
Q 021156          276 KVAGIGRVDVTVGSAL  291 (316)
Q Consensus       276 ~~~G~g~~gVivG~Al  291 (316)
                      +.+|  +++|.+|+++
T Consensus       275 l~~G--Ad~V~igr~~  288 (332)
T 1vcf_A          275 LALG--ADLLAVARPL  288 (332)
T ss_dssp             HHHT--CSEEEECGGG
T ss_pred             HHhC--CChHhhhHHH
Confidence            9998  9999999998

>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*

Probab=97.88  E-value=6.8e-05  Score=74.64  Aligned_cols=72  Identities=19%  Similarity=0.189  Sum_probs=59.1

Q ss_pred             HHHHHHHHHcCCCEEEEeecCCccc--cC-CCCHHHHHHHhhcC-------CCcEEEEeCCCCHHHHHHHHHhCCCcCEE
Q 021156          216 DERVLDFLASYADEFLVHGVDVEGK--KL-GIDDELVALLGKYS-------PIPVTYAGGVTTMADLEKIKVAGIGRVDV  285 (316)
Q Consensus       216 ~e~a~~~~~~Ga~~ilvtdi~~dG~--~~-G~d~eli~~l~~~~-------~iPVIasGGI~s~eDi~~l~~~G~g~~gV  285 (316)
                      .+.++.+.+.|++.|.+..-  -|+  .. .++++.+.++.+.+       ++|||++|||++.+|+.+++.+|  +++|
T Consensus       354 ~e~A~~a~~aGad~I~vs~h--gG~~~d~~~~~~~~l~~v~~~v~~~~~~~~ipVia~GGI~~g~Dv~kaLalG--AdaV  429 (511)
T 1kbi_A          354 TEDVIKAAEIGVSGVVLSNH--GGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLG--AKGV  429 (511)
T ss_dssp             HHHHHHHHHTTCSEEEECCT--TTTSSTTCCCHHHHHHHHHHHHHTTTCBTTBEEEEESSCCSHHHHHHHHHHT--CSEE
T ss_pred             HHHHHHHHHcCCCEEEEcCC--CCccCCCCCchHHHHHHHHHHHHhhccCCCcEEEEECCCCCHHHHHHHHHcC--CCEE
Confidence            46799999999999988431  222  12 23688888887665       79999999999999999999998  9999


Q ss_pred             EEccch
Q 021156          286 TVGSAL  291 (316)
Q Consensus       286 ivG~Al  291 (316)
                      +||+++
T Consensus       430 ~iGr~~  435 (511)
T 1kbi_A          430 GLGRPF  435 (511)
T ss_dssp             EECHHH
T ss_pred             EECHHH
Confidence            999988

>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*

Probab=97.86  E-value=3.4e-05  Score=72.75  Aligned_cols=87  Identities=11%  Similarity=0.021  Sum_probs=70.1

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecC--C----cc--cHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHcC-CCEEEeCC
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGA--D----PL--SKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEEG-ATHVIVTS  162 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda--~----~~--~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~G-ad~VVigt  162 (316)
                      .++.++|+.+++.|++.+|+.....  .    .+  +...+.++.+.+++|++++|||+ .++++++++.| ||.|.+|+
T Consensus       229 ~~~~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~s~~~a~~~l~~G~aD~V~iGR  308 (338)
T 1z41_A          229 ADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQADMATGAVGMITDGSMAEEILQNGRADLIFIGR  308 (338)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCSHHHHHHHHHTTSCSEEEECH
T ss_pred             HHHHHHHHHHHHcCCCEEEEecCccccCCCCCCccchHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHcCCceEEeecH
Confidence            3677899999999999999987531  1    11  22333333345789999999998 59999999999 99999999


Q ss_pred             eeecCCCCCHHHHHHHHHHhc
Q 021156          163 YVFNNGQMDLERLKDLVRVVG  183 (316)
Q Consensus       163 ~~~~~~~~~~eli~ei~~~~G  183 (316)
                      .++.|    |+++.++.+.++
T Consensus       309 ~~i~n----Pdl~~ki~~~~~  325 (338)
T 1z41_A          309 ELLRD----PFFARTAAKQLN  325 (338)
T ss_dssp             HHHHC----TTHHHHHHHHTT
T ss_pred             HHHhC----chHHHHHHcCCC
Confidence            99998    999999998885

>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*

Probab=97.83  E-value=0.00021  Score=67.82  Aligned_cols=164  Identities=19%  Similarity=0.108  Sum_probs=99.0

Q ss_pred             HHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHhCC---CcEEEecCCCH---HHHHHHHHc--CCCEEEeCCeeecCC
Q 021156           97 EFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAYP---GGLQVGGGINS---DNSLSYIEE--GATHVIVTSYVFNNG  168 (316)
Q Consensus        97 e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~~---~pl~vGGGIr~---e~~~~~l~~--Gad~VVigt~~~~~~  168 (316)
                      ++|...+++|..+  ++  .+. ...+...+.++..+   -++.+.-|.+.   +.++.+++.  |++.+.+.+.. .++
T Consensus        72 ~lA~Ava~~Gglg--~i--~~~-~s~e~~~~~i~~~p~~l~~v~~~~g~~~~~~~~~~~l~~~~~g~~~i~i~~~~-g~~  145 (351)
T 2c6q_A           72 EMAKVLCKFSLFT--AV--HKH-YSLVQWQEFAGQNPDCLEHLAASSGTGSSDFEQLEQILEAIPQVKYICLDVAN-GYS  145 (351)
T ss_dssp             HHHHHHHHTTCEE--EC--CTT-CCHHHHHHHHHHCGGGCTTEEEEECSSHHHHHHHHHHHHHCTTCCEEEEECSC-TTB
T ss_pred             HHHHHHHHCCCEE--EE--cCC-CCHHHHHHHHhhCchhhheeEeecCCChHHHHHHHHHHhccCCCCEEEEEecC-CCc
Confidence            5888888887322  22  122 12233333333211   13454446652   557778887  99988775432 121


Q ss_pred             CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccc--------
Q 021156          169 QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGK--------  240 (316)
Q Consensus       169 ~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~--------  240 (316)
                      ...++.++++.+.++.-.+++. ++                    ...+.++.+.+.|++.|.+. ... |.        
T Consensus       146 ~~~~~~i~~lr~~~~~~~vi~g-~v--------------------~t~e~A~~a~~aGaD~I~v~-~g~-G~~~~~r~~~  202 (351)
T 2c6q_A          146 EHFVEFVKDVRKRFPQHTIMAG-NV--------------------VTGEMVEELILSGADIIKVG-IGP-GSVCTTRKKT  202 (351)
T ss_dssp             HHHHHHHHHHHHHCTTSEEEEE-EE--------------------CSHHHHHHHHHTTCSEEEEC-SSC-STTBCHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCeEEEE-eC--------------------CCHHHHHHHHHhCCCEEEEC-CCC-CcCcCccccC
Confidence            1014567777777731122211 11                    12478899999999988662 111 11        


Q ss_pred             c-CCCCHHHHHHHhh---cCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          241 K-LGIDDELVALLGK---YSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       241 ~-~G~d~eli~~l~~---~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      . ..+.++.+.++.+   ..++|||+.|||++..|+.+++.+|  +++|.+|+++
T Consensus       203 g~~~p~~~~l~~v~~~~~~~~ipvIa~GGI~~g~di~kAlalG--A~~V~vG~~f  255 (351)
T 2c6q_A          203 GVGYPQLSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAG--ADFVMLGGML  255 (351)
T ss_dssp             CBCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTT--CSEEEESTTT
T ss_pred             CCCccHHHHHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcC--CCceeccHHH
Confidence            0 1245555555543   3579999999999999999999999  9999999998

>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1

Probab=97.82  E-value=6.9e-05  Score=69.78  Aligned_cols=132  Identities=18%  Similarity=0.146  Sum_probs=79.6

Q ss_pred             HHHHHHHHcCCCEEEeCCeeecCC-C-CCHHHHHHHHHH---hcCceEEEeeeeeecCCeeEEEeCCcceecc--cCHHH
Q 021156          145 DNSLSYIEEGATHVIVTSYVFNNG-Q-MDLERLKDLVRV---VGKQRLVLDLSCRKKDGKYAIVTDRWQKFSD--VYLDE  217 (316)
Q Consensus       145 e~~~~~l~~Gad~VVigt~~~~~~-~-~~~eli~ei~~~---~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~--~~~~e  217 (316)
                      ..++.++++||+.|-+-.....+. + --.+.+.++.+.   +| -.+++.+..+  +.       ...+..+  -.+.+
T Consensus       112 ~~ve~a~~~GAdaV~vlv~~~~d~~~~~~~~~i~~v~~~~~~~G-~p~lv~~~~~--g~-------~v~~~~~~~~~v~~  181 (304)
T 1to3_A          112 INAQAVKRDGAKALKLLVLWRSDEDAQQRLNMVKEFNELCHSNG-LLSIIEPVVR--PP-------RCGDKFDREQAIID  181 (304)
T ss_dssp             CCHHHHHHTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHTTT-CEEEEEEEEC--CC-------SSCSCCCHHHHHHH
T ss_pred             hhHHHHHHcCCCEEEEEEEcCCCccHHHHHHHHHHHHHHHHHcC-CcEEEEEECC--CC-------ccccCCChhHHHHH
Confidence            568999999999876322222210 0 002455555544   44 2233443332  11       0111011  12345


Q ss_pred             HHHHHHHcCCCEEEEee-cCCccccCCCCHHHHHHHhhc----CCCc-EEEEeCCCCHH----HHHHHHHhCCCcCEEEE
Q 021156          218 RVLDFLASYADEFLVHG-VDVEGKKLGIDDELVALLGKY----SPIP-VTYAGGVTTMA----DLEKIKVAGIGRVDVTV  287 (316)
Q Consensus       218 ~a~~~~~~Ga~~ilvtd-i~~dG~~~G~d~eli~~l~~~----~~iP-VIasGGI~s~e----Di~~l~~~G~g~~gViv  287 (316)
                      .++.+.++|++.+-++. ++  ++  | +++.++++.+.    +++| |+++||+ +.+    .+..+.+.|  ++|+++
T Consensus       182 aa~~a~~lGaD~iKv~~~~~--~~--g-~~~~~~~vv~~~~~~~~~P~Vv~aGG~-~~~~~~~~~~~a~~aG--a~Gv~v  253 (304)
T 1to3_A          182 AAKELGDSGADLYKVEMPLY--GK--G-ARSDLLTASQRLNGHINMPWVILSSGV-DEKLFPRAVRVAMEAG--ASGFLA  253 (304)
T ss_dssp             HHHHHTTSSCSEEEECCGGG--GC--S-CHHHHHHHHHHHHHTCCSCEEECCTTS-CTTTHHHHHHHHHHTT--CCEEEE
T ss_pred             HHHHHHHcCCCEEEeCCCcC--CC--C-CHHHHHHHHHhccccCCCCeEEEecCC-CHHHHHHHHHHHHHcC--CeEEEE
Confidence            58899999999775655 44  32  2 67777776666    8999 9999999 553    477788877  999999


Q ss_pred             ccchhhc
Q 021156          288 GSALDIF  294 (316)
Q Consensus       288 G~Al~~~  294 (316)
                      ||++|..
T Consensus       254 GRaI~q~  260 (304)
T 1to3_A          254 GRAVWSS  260 (304)
T ss_dssp             SHHHHGG
T ss_pred             ehHHhCc
Confidence            9999333

>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*

Probab=97.80  E-value=2.1e-05  Score=72.60  Aligned_cols=86  Identities=17%  Similarity=0.150  Sum_probs=65.8

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEec--------CC-------------cccH---HHHHHHHH-hCCCcEEEecCCC-HHH
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLG--------AD-------------PLSK---AAAIEALH-AYPGGLQVGGGIN-SDN  146 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLd--------a~-------------~~~~---~~i~~~v~-~~~~pl~vGGGIr-~e~  146 (316)
                      .++.++|+.+.++|++.+++.+..        ..             ....   ...++.++ .+++|+++.|||+ .++
T Consensus       176 ~~~~~~a~~l~~~G~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~~~~~i~~i~~~~~ipvia~GGI~~~~d  255 (311)
T 1ep3_A          176 TDIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDVDIPIIGMGGVANAQD  255 (311)
T ss_dssp             SCSHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTTCSSCEEECSSCCSHHH
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCCcccccCcccCCccccCCCCcccCccchHHHHHHHHHHHHhcCCCEEEECCcCCHHH
Confidence            367889999999999999986421        10             0111   13333444 5789999999998 599


Q ss_pred             HHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHh
Q 021156          147 SLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVV  182 (316)
Q Consensus       147 ~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~  182 (316)
                      +.+++++|||.|.+|+.++.+    |++++++.+..
T Consensus       256 ~~~~l~~GAd~V~vg~~~l~~----p~~~~~i~~~l  287 (311)
T 1ep3_A          256 VLEMYMAGASAVAVGTANFAD----PFVCPKIIDKL  287 (311)
T ss_dssp             HHHHHHHTCSEEEECTHHHHC----TTHHHHHHHHH
T ss_pred             HHHHHHcCCCEEEECHHHHcC----cHHHHHHHHHH
Confidence            999999999999999999997    88888887765

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=97.79  E-value=0.00017  Score=71.62  Aligned_cols=174  Identities=16%  Similarity=0.059  Sum_probs=87.4

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCC--c-ccHHHHHHHHH-hC-----CCcEEEecCC--C--HHHHHHHHHcCCCEEEe
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGAD--P-LSKAAAIEALH-AY-----PGGLQVGGGI--N--SDNSLSYIEEGATHVIV  160 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~--~-~~~~~i~~~v~-~~-----~~pl~vGGGI--r--~e~~~~~l~~Gad~VVi  160 (316)
                      +..++++.+.+.+...+-++|=++.  . .....+.+.+. ..     ...+.++.++  .  .+.++.+.+.|++.+++
T Consensus       181 sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~~~~~~~d~~~~l~v~a~v~~~~~~e~~~~l~e~gv~~l~V  260 (503)
T 1me8_A          181 KLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQVCHNELVDSQKRYLVGAGINTRDFRERVPALVEAGADVLCI  260 (503)
T ss_dssp             -----------------------------------------CCCCBCTTSCBCCEEEECSSSHHHHHHHHHHHTCSEEEE
T ss_pred             cHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHHHHhhhcccchhccccccccccccCchhHHHHHHHHHhhhccceEE
Confidence            3446666677777888888874332  0 11222222221 11     1133444433  2  35688888999999988


Q ss_pred             CCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCcc-
Q 021156          161 TSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEG-  239 (316)
Q Consensus       161 gt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG-  239 (316)
                      .+..-.. ...++.++.+.+.++.+..++.=++                    ...+.++.+.+.|++.+.+ .+..-+ 
T Consensus       261 d~~~g~~-~~~~~~i~~lk~~~~~~~~Vi~G~V--------------------~t~~~a~~l~~aGad~I~V-g~~~g~~  318 (503)
T 1me8_A          261 DSSDGFS-EWQKITIGWIREKYGDKVKVGAGNI--------------------VDGEGFRYLADAGADFIKI-GIGGGSI  318 (503)
T ss_dssp             CCSCCCS-HHHHHHHHHHHHHHGGGSCEEEEEE--------------------CSHHHHHHHHHHTCSEEEE-CSSCSTT
T ss_pred             ecccCcc-cchhhHHHHHHHhCCCCceEeeccc--------------------cCHHHHHHHHHhCCCeEEe-cccCCcC
Confidence            6653221 1124567777777632022221111                    1236788899999999876 543211 


Q ss_pred             ------ccCC-CCHHHHHHHhhcC---------CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          240 ------KKLG-IDDELVALLGKYS---------PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       240 ------~~~G-~d~eli~~l~~~~---------~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                            ...| |.+..+.++.+.+         ++|||++|||++..|+.+++.+|  +++|++|+++
T Consensus       319 ~~~r~~~~~g~p~~~~l~~v~~~~~~~~~~~~~~ipvia~GGi~~~~di~kAlalG--A~~V~iG~~~  384 (503)
T 1me8_A          319 CITREQKGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAMG--ADFIMLGRYF  384 (503)
T ss_dssp             CCSTTTTCCCCCHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHHHTT--CSEEEESHHH
T ss_pred             cccccccCCCCchHHHHHHHHHHHHHHhhhcCCCceEEEeCCCCCHHHHHHHHHcC--CCEEEECchh
Confidence                  1112 4566666665432         69999999999999999999999  9999999987

>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1

Probab=97.78  E-value=5.6e-05  Score=67.29  Aligned_cols=120  Identities=18%  Similarity=0.186  Sum_probs=76.7

Q ss_pred             HHHHHHHHcCCCEEE--eCCeeecCCCC--CHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHH
Q 021156          145 DNSLSYIEEGATHVI--VTSYVFNNGQM--DLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVL  220 (316)
Q Consensus       145 e~~~~~l~~Gad~VV--igt~~~~~~~~--~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~  220 (316)
                      .+++.+.+.||+-|=  ++-...++++.  ..+.++++.+..+      .+-+|.     .+-+.+|...   +..+.++
T Consensus        74 ~~~~~A~~~Gad~Id~viN~g~~~~~~~~~~~~~i~~v~~a~~------pv~vKv-----i~e~~~l~~~---~~~~~a~  139 (225)
T 1mzh_A           74 KEAVEAVRDGAQELDIVWNLSAFKSEKYDFVVEELKEIFRETP------SAVHKV-----IVETPYLNEE---EIKKAVE  139 (225)
T ss_dssp             HHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHTCT------TSEEEE-----ECCGGGCCHH---HHHHHHH
T ss_pred             HHHHHHHHcCCCEEEEEecHHHHhcCChHHHHHHHHHHHHHhc------CceEEE-----EEeCCCCCHH---HHHHHHH
Confidence            456788999999875  33333332211  0123444444442      122331     0011334321   3678899


Q ss_pred             HHHHcCCCEEEEeecCCcccc-CCCCHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCE
Q 021156          221 DFLASYADEFLVHGVDVEGKK-LGIDDELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVD  284 (316)
Q Consensus       221 ~~~~~Ga~~ilvtdi~~dG~~-~G~d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~g  284 (316)
                      .+.+.|++.+ -|+   .|.. .|.+++.++.+++.+  ++||+++|||+|.+|+.+++++|  ++.
T Consensus       140 ~a~eaGad~I-~ts---tg~~~gga~~~~i~~v~~~v~~~ipVia~GGI~t~~da~~~l~aG--A~~  200 (225)
T 1mzh_A          140 ICIEAGADFI-KTS---TGFAPRGTTLEEVRLIKSSAKGRIKVKASGGIRDLETAISMIEAG--ADR  200 (225)
T ss_dssp             HHHHHTCSEE-ECC---CSCSSSCCCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTT--CSE
T ss_pred             HHHHhCCCEE-EEC---CCCCCCCCCHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhC--chH
Confidence            9999999987 222   2443 456999999998765  79999999999999999999988  774

>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}

Probab=97.78  E-value=0.00021  Score=68.22  Aligned_cols=136  Identities=13%  Similarity=0.154  Sum_probs=85.9

Q ss_pred             CCcEEE--ecCCCHHHHHHHH-HcCCCEEEeCCeeecC-----CCCCH----HHHHHHHHHhcCceEEEeeeeeecCCee
Q 021156          133 PGGLQV--GGGINSDNSLSYI-EEGATHVIVTSYVFNN-----GQMDL----ERLKDLVRVVGKQRLVLDLSCRKKDGKY  200 (316)
Q Consensus       133 ~~pl~v--GGGIr~e~~~~~l-~~Gad~VVigt~~~~~-----~~~~~----eli~ei~~~~G~~~IvvslD~k~~~g~~  200 (316)
                      +.|++.  |++...+++.+.. .+|||.+.+.-...+.     |..+.    +.++++.+.++ -.|+            
T Consensus       144 ~~~~ianig~~~~~e~~~~~ve~~~adal~ihln~~qe~~~p~Gd~~~~~~~~~I~~l~~~~~-~PVi------------  210 (365)
T 3sr7_A          144 HLLLATNIGLDKPYQAGLQAVRDLQPLFLQVHINLMQELLMPEGEREFRSWKKHLSDYAKKLQ-LPFI------------  210 (365)
T ss_dssp             -CCEEEEEETTSCHHHHHHHHHHHCCSCEEEEECHHHHHTSSSSCCCCHHHHHHHHHHHHHCC-SCEE------------
T ss_pred             CCcEEEEeCCCCCHHHHHHHHHhcCCCEEEEeccccccccCCCCCCcHHHHHHHHHHHHHhhC-CCEE------------
Confidence            456654  4433457777766 5799988876544211     11123    56777766553 1221            


Q ss_pred             EEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCcccc-----------------CCC-CHHHHHHHhhcC-CCcEE
Q 021156          201 AIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKK-----------------LGI-DDELVALLGKYS-PIPVT  261 (316)
Q Consensus       201 ~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~-----------------~G~-d~eli~~l~~~~-~iPVI  261 (316)
                       ++..||.    . ..+.++.+.+.|++.|.+...  -|+.                 .|. ..+.+..+.... ++|||
T Consensus       211 -vK~vg~g----~-s~e~A~~l~~aGad~I~V~g~--GGt~~a~ie~~r~~~~~~~~~~g~pt~~~L~~v~~~~~~ipvi  282 (365)
T 3sr7_A          211 -LKEVGFG----M-DVKTIQTAIDLGVKTVDISGR--GGTSFAYIENRRGGNRSYLNQWGQTTAQVLLNAQPLMDKVEIL  282 (365)
T ss_dssp             -EEECSSC----C-CHHHHHHHHHHTCCEEECCCB--C--------------CGGGTTCSCBHHHHHHHHGGGTTTSEEE
T ss_pred             -EEECCCC----C-CHHHHHHHHHcCCCEEEEeCC--CCcccchhhccccccccccccccccHHHHHHHHHHhcCCCeEE
Confidence             2212332    1 237899999999999887443  2221                 122 235566554432 79999


Q ss_pred             EEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          262 YAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       262 asGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      ++|||++..|+.+++.+|  +++|.+|+++
T Consensus       283 a~GGI~~g~Dv~KaLalG--AdaV~ig~~~  310 (365)
T 3sr7_A          283 ASGGIRHPLDIIKALVLG--AKAVGLSRTM  310 (365)
T ss_dssp             ECSSCCSHHHHHHHHHHT--CSEEEESHHH
T ss_pred             EeCCCCCHHHHHHHHHcC--CCEEEECHHH
Confidence            999999999999999999  9999999988

>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*

Probab=97.77  E-value=7.3e-05  Score=65.92  Aligned_cols=141  Identities=14%  Similarity=0.123  Sum_probs=85.3

Q ss_pred             HHHHHHh--CCCcEEEecCCC--H-HHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCe
Q 021156          125 AIEALHA--YPGGLQVGGGIN--S-DNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGK  199 (316)
Q Consensus       125 i~~~v~~--~~~pl~vGGGIr--~-e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~  199 (316)
                      +++.+++  .+.|+....-+.  . ..++.+.++|||.+++-.+....   ..+.+.+..+++|.   -+.+|+-   + 
T Consensus        49 ~i~~lr~~~~~~~i~ld~~l~d~p~~~~~~~~~aGad~i~vh~~~~~~---~~~~~~~~~~~~g~---~~~~d~l---~-  118 (218)
T 3jr2_A           49 AVSTLRHNHPNHILVCDMKTTDGGAILSRMAFEAGADWITVSAAAHIA---TIAACKKVADELNG---EIQIEIY---G-  118 (218)
T ss_dssp             HHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHHTCSEEEEETTSCHH---HHHHHHHHHHHHTC---EEEEECC---S-
T ss_pred             HHHHHHHhCCCCcEEEEEeecccHHHHHHHHHhcCCCEEEEecCCCHH---HHHHHHHHHHHhCC---ccceeee---e-
Confidence            4455553  256777655443  2 44788899999999886543210   02333333455552   2233332   0 


Q ss_pred             eEEEeCCcceecccCHHHHHHHHHHcCCCEEEE-eecCCccccCC--CCHHHHHHHhhc--CCCcEEEEeCCCCHHHHHH
Q 021156          200 YAIVTDRWQKFSDVYLDERVLDFLASYADEFLV-HGVDVEGKKLG--IDDELVALLGKY--SPIPVTYAGGVTTMADLEK  274 (316)
Q Consensus       200 ~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilv-tdi~~dG~~~G--~d~eli~~l~~~--~~iPVIasGGI~s~eDi~~  274 (316)
                        +          .++ +.++.+.+.|++.+++ +..+.  ...|  +..+.++++++.  .++|+++.||| +++.+.+
T Consensus       119 --~----------~T~-~~~~~~~~~g~d~v~~~~~~~~--~~~g~~~~~~~l~~i~~~~~~~~pi~v~GGI-~~~~~~~  182 (218)
T 3jr2_A          119 --N----------WTM-QDAKAWVDLGITQAIYHRSRDA--ELAGIGWTTDDLDKMRQLSALGIELSITGGI-VPEDIYL  182 (218)
T ss_dssp             --S----------CCH-HHHHHHHHTTCCEEEEECCHHH--HHHTCCSCHHHHHHHHHHHHTTCEEEEESSC-CGGGGGG
T ss_pred             --c----------CCH-HHHHHHHHcCccceeeeecccc--ccCCCcCCHHHHHHHHHHhCCCCCEEEECCC-CHHHHHH
Confidence              0          123 4566777779998765 33221  1122  233444444443  47899999999 5899999


Q ss_pred             HHHhCCCcCEEEEccchhhcc
Q 021156          275 IKVAGIGRVDVTVGSALDIFG  295 (316)
Q Consensus       275 l~~~G~g~~gVivG~Al~~~~  295 (316)
                      +.+.|  ++++++||++  +.
T Consensus       183 ~~~aG--Ad~vvvGsaI--~~  199 (218)
T 3jr2_A          183 FEGIK--TKTFIAGRAL--AG  199 (218)
T ss_dssp             GTTSC--EEEEEESGGG--SH
T ss_pred             HHHcC--CCEEEEchhh--cC
Confidence            99988  9999999999  64

>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*

Probab=97.74  E-value=4.4e-05  Score=72.75  Aligned_cols=87  Identities=14%  Similarity=0.057  Sum_probs=69.6

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecC--C------cccHHHHHHHHH-hCCCcEEEecCCC-HHHHHHHHHcC-CCEEEeC
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGA--D------PLSKAAAIEALH-AYPGGLQVGGGIN-SDNSLSYIEEG-ATHVIVT  161 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda--~------~~~~~~i~~~v~-~~~~pl~vGGGIr-~e~~~~~l~~G-ad~VVig  161 (316)
                      .+..++++.++++|++.+|+..-.-  .      +.......+.++ .+++|+++.|||+ .++++++++.| ||.|.+|
T Consensus       246 ~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~GgI~s~e~a~~~l~~G~aD~V~iG  325 (363)
T 3l5l_A          246 EESIELARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAERVRREAKLPVTSAWGFGTPQLAEAALQANQLDLVSVG  325 (363)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHTCCEEECSSTTSHHHHHHHHHTTSCSEEECC
T ss_pred             HHHHHHHHHHHHcCCCEEEEecCccccccccCCCcchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHCCCccEEEec
Confidence            3677899999999999999887321  1      111223334444 5789999999998 59999999999 9999999


Q ss_pred             CeeecCCCCCHHHHHHHHHHhc
Q 021156          162 SYVFNNGQMDLERLKDLVRVVG  183 (316)
Q Consensus       162 t~~~~~~~~~~eli~ei~~~~G  183 (316)
                      ..++.|    |+++.++.+.+|
T Consensus       326 R~~lan----Pdl~~k~~~~lg  343 (363)
T 3l5l_A          326 RAHLAD----PHWAYFAAKELG  343 (363)
T ss_dssp             HHHHHC----TTHHHHHHHHTT
T ss_pred             HHHHhC----chHHHHHHHHcC
Confidence            999998    999999999986

>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}

Probab=97.72  E-value=0.0015  Score=58.06  Aligned_cols=164  Identities=17%  Similarity=0.175  Sum_probs=108.3

Q ss_pred             HHcCCCcceEEE-ec--CCcccHHHHHHHH---HhCCCcEEE-----ecCCC-H--------HHHHHHHHcCCCEEEeCC
Q 021156          103 KEDGLTGGHAIM-LG--ADPLSKAAAIEAL---HAYPGGLQV-----GGGIN-S--------DNSLSYIEEGATHVIVTS  162 (316)
Q Consensus       103 ~~~G~~~l~lvD-Ld--a~~~~~~~i~~~v---~~~~~pl~v-----GGGIr-~--------e~~~~~l~~Gad~VVigt  162 (316)
                      .+.|++++-+.+ |.  +..+....+..+.   +.+++|+.|     ||+.- +        +|++.+.++|++-||+|.
T Consensus        18 ~~~GAdRIELc~~L~~GGlTPS~g~i~~~~~~~~~~~ipV~vMIRPR~GdF~Ys~~E~~~M~~Di~~~~~~GadGvV~G~   97 (224)
T 2bdq_A           18 DKAIISRVELCDNLAVGGTTPSYGVIKEANQYLHEKGISVAVMIRPRGGNFVYNDLELRIMEEDILRAVELESDALVLGI   97 (224)
T ss_dssp             CTTTCCEEEEEBCGGGTCBCCCHHHHHHHHHHHHHTTCEEEEECCSSSSCSCCCHHHHHHHHHHHHHHHHTTCSEEEECC
T ss_pred             HHcCCCEEEEcCCcccCCcCCCHHHHHHHHHhhhhcCCceEEEECCCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEee
Confidence            356899999986 33  2245666665554   667888876     88884 2        267778889999999999


Q ss_pred             eeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccC
Q 021156          163 YVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKL  242 (316)
Q Consensus       163 ~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~  242 (316)
                      ... ||++|.+.++++.+..++-.+.              +.+.+......++.+..+.+.++|+++|+ |+=....+.-
T Consensus        98 Lt~-dg~iD~~~~~~Li~~a~~~~vT--------------FHRAFD~~~~~d~~~ale~L~~lGv~rIL-TSG~~~~~~a  161 (224)
T 2bdq_A           98 LTS-NNHIDTEAIEQLLPATQGLPLV--------------FHMAFDVIPKSDQKKSIDQLVALGFTRIL-LHGSSNGEPI  161 (224)
T ss_dssp             BCT-TSSBCHHHHHHHHHHHTTCCEE--------------ECGGGGGSCTTTHHHHHHHHHHTTCCEEE-ECSCSSCCCG
T ss_pred             ECC-CCCcCHHHHHHHHHHhCCCeEE--------------EECchhccCCcCHHHHHHHHHHcCCCEEE-CCCCCCCCcH
Confidence            764 4789999999999876532222              22233222113677889999999999998 4422222111


Q ss_pred             CCCHHHHHHHhhc--CCCcEEEEeCCCCHHHHHHHHH-hCCCcCEE
Q 021156          243 GIDDELVALLGKY--SPIPVTYAGGVTTMADLEKIKV-AGIGRVDV  285 (316)
Q Consensus       243 G~d~eli~~l~~~--~~iPVIasGGI~s~eDi~~l~~-~G~g~~gV  285 (316)
                      .-..+.++++.+.  -.+.|+++|||+. +.+.++.+ .|  +..+
T Consensus       162 ~~g~~~L~~Lv~~a~~ri~Im~GgGV~~-~Ni~~l~~~tG--v~e~  204 (224)
T 2bdq_A          162 IENIKHIKALVEYANNRIEIMVGGGVTA-ENYQYICQETG--VKQA  204 (224)
T ss_dssp             GGGHHHHHHHHHHHTTSSEEEECSSCCT-TTHHHHHHHHT--CCEE
T ss_pred             HHHHHHHHHHHHhhCCCeEEEeCCCCCH-HHHHHHHHhhC--CCEE
Confidence            1256778888653  3578888999886 56777764 46  5433

>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}

Probab=97.70  E-value=0.00017  Score=62.65  Aligned_cols=48  Identities=25%  Similarity=0.313  Sum_probs=43.0

Q ss_pred             CCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          242 LGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       242 ~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      .|+-.+.++++++.+++|+|++|+|++.||+.+++++|  +++|..++.-
T Consensus       135 PGi~p~iI~~i~~~~~~PiIaGGlI~~~edv~~al~aG--A~aVsTs~~~  182 (192)
T 3kts_A          135 PGIIPEQVQKMTQKLHIPVIAGGLIETSEQVNQVIASG--AIAVTTSNKH  182 (192)
T ss_dssp             CTTCHHHHHHHHHHHCCCEEEESSCCSHHHHHHHHTTT--EEEEEECCGG
T ss_pred             CchhHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcC--CeEEEeCCHH
Confidence            56666899999999999999999999999999999999  8999988653

>3tjl_A NADPH dehydrogenase; OLD yellow enzyme, flavin mononucleotide, TIM barrel, NADPH oxidoreductase, enone reductase; HET: FMN; 1.50A {Scheffersomyces stipitis cbs 6054} PDB: 3upw_A* 4df2_A*

Probab=97.68  E-value=3.3e-05  Score=74.75  Aligned_cols=148  Identities=13%  Similarity=0.033  Sum_probs=91.0

Q ss_pred             HHHHHHcCCCEEEeCCee--------------ecC---C------CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEE
Q 021156          147 SLSYIEEGATHVIVTSYV--------------FNN---G------QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIV  203 (316)
Q Consensus       147 ~~~~l~~Gad~VVigt~~--------------~~~---~------~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~  203 (316)
                      ++++.++|+|.|=|..+-              +.|   |      ++..+.++.+.+.+|++.|.+-+...  +.     
T Consensus       174 a~~a~~aGfdgveih~~~GYLl~QFLsp~~N~r~D~YGGs~enr~r~~~ei~~av~~~~~~~~v~~r~~~~--~~-----  246 (407)
T 3tjl_A          174 AQKAMDAGFDYIELHAAHGYLLDQFLQPCTNQRTDEYGGSIENRARLILELIDHLSTIVGADKIGIRISPW--AT-----  246 (407)
T ss_dssp             HHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTT--CC-----
T ss_pred             HHHHHHhCCCeEEECCccchHHHHhcCccccccCCcCCCChhhChHHHHHHHHHHHHHhCCCeEEEEECcc--cc-----
Confidence            555667899999885432              111   1      23346777777778766543322210  00     


Q ss_pred             eCCccee-c----ccCHHHHHHHH---HHcC--CCEEEEeecCCcccc-CCC--CHHHHHHHhhcCCCcEEEEeCCCCHH
Q 021156          204 TDRWQKF-S----DVYLDERVLDF---LASY--ADEFLVHGVDVEGKK-LGI--DDELVALLGKYSPIPVTYAGGVTTMA  270 (316)
Q Consensus       204 ~~gw~~~-~----~~~~~e~a~~~---~~~G--a~~ilvtdi~~dG~~-~G~--d~eli~~l~~~~~iPVIasGGI~s~e  270 (316)
                      ..|.... .    .....++++++   .+.|  ++.+-++.-...+.. .++  +++.++.+++..++|||++||+.+.+
T Consensus       247 ~~g~~~~~d~~~~~~~~~~l~~~L~~~~~~G~~l~ylhv~~~~~~~~~~~~~~~~~~~~~~ir~~~~~PvI~~Ggi~~~~  326 (407)
T 3tjl_A          247 FQNMKAHKDTVHPLTTFSYLVHELQQRADKGQGIAYISVVEPRVSGNVDVSEEDQAGDNEFVSKIWKGVILKAGNYSYDA  326 (407)
T ss_dssp             GGGCCGGGSSSCHHHHHHHHHHHHHHHHHTTCCCSEEEEECTTEETTEECCGGGCCCCSHHHHHHCCSEEEEESCGGGGT
T ss_pred             cCCCcccccccccHHHHHHHHHHHHhHhhcCCceeEEEEEccccCCCCcCCccchhHHHHHHHHHhCCCEEecCCCCCHH
Confidence            0011110 0    11246678888   8889  998766632211211 111  23455667777789999999999998


Q ss_pred             HHHHHHHh---CCCcCEEEEccchhhccCcccHHHHH
Q 021156          271 DLEKIKVA---GIGRVDVTVGSALDIFGGNLAYKDVV  304 (316)
Q Consensus       271 Di~~l~~~---G~g~~gVivG~Al~~~~g~~~~~~~~  304 (316)
                      |..++++.   | +++.|++||++  +.+|..++.+.
T Consensus       327 dA~~~i~~~~~g-~aDlVa~GR~~--iaNPdL~~ri~  360 (407)
T 3tjl_A          327 PEFKTLKEDIAD-KRTLVGFSRYF--TSNPNLVWKLR  360 (407)
T ss_dssp             TTTHHHHHHHTT-SSEEEECSHHH--HHCTTHHHHHH
T ss_pred             HHHHHHHhhccC-CCeEEEeChhh--hhCchHHHHHH
Confidence            77776665   6 59999999999  99998776664

>2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti}

Probab=97.66  E-value=0.00034  Score=66.79  Aligned_cols=138  Identities=13%  Similarity=0.063  Sum_probs=103.4

Q ss_pred             HHHHHHHHcCCCEEEe--CCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH
Q 021156          145 DNSLSYIEEGATHVIV--TSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF  222 (316)
Q Consensus       145 e~~~~~l~~Gad~VVi--gt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~  222 (316)
                      +.++++.++|.+.+=+  |.....    +.+.++.+.+.+|  .+.+.+|+.          .+|...   +..++++.+
T Consensus       153 ~~a~~~~~~Gf~~iKik~g~~~~~----~~e~v~avr~a~g--d~~l~vD~n----------~~~~~~---~a~~~~~~l  213 (384)
T 2pgw_A          153 RDAAVGHAQGERVFYLKVGRGEKL----DLEITAAVRGEIG--DARLRLDAN----------EGWSVH---DAINMCRKL  213 (384)
T ss_dssp             HHHHHHHHTTCCEEEEECCSCHHH----HHHHHHHHHTTST--TCEEEEECT----------TCCCHH---HHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEECcCCCHHH----HHHHHHHHHHHcC--CcEEEEecC----------CCCCHH---HHHHHHHHH
Confidence            5577888999987654  431222    3678888888887  355678873          356432   456788899


Q ss_pred             HHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHH
Q 021156          223 LASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKD  302 (316)
Q Consensus       223 ~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~  302 (316)
                      .+.|+..+  .     .-+...|++.++++++.+++||++.+.+.+.+++.++++.+ .++.+.+..+-  .+|.....+
T Consensus       214 ~~~~i~~i--E-----qP~~~~~~~~~~~l~~~~~iPI~~de~i~~~~~~~~~i~~~-~~d~v~ik~~~--~GGit~~~~  283 (384)
T 2pgw_A          214 EKYDIEFI--E-----QPTVSWSIPAMAHVREKVGIPIVADQAAFTLYDVYEICRQR-AADMICIGPRE--IGGIQPMMK  283 (384)
T ss_dssp             GGGCCSEE--E-----CCSCTTCHHHHHHHHHHCSSCEEESTTCCSHHHHHHHHHTT-CCSEEEECHHH--HTSHHHHHH
T ss_pred             HhcCCCEE--e-----CCCChhhHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHcC-CCCEEEEcchh--hCCHHHHHH
Confidence            99998854  2     12234599999999998999999999999999999999988 58999999888  777777777


Q ss_pred             HHHHHHhhc
Q 021156          303 VVAWHAQQE  311 (316)
Q Consensus       303 ~~~~~~~~~  311 (316)
                      +.++++++.
T Consensus       284 i~~~A~~~g  292 (384)
T 2pgw_A          284 AAAVAEAAG  292 (384)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHCC
Confidence            777777654

>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*

Probab=97.61  E-value=0.00011  Score=69.66  Aligned_cols=87  Identities=15%  Similarity=0.114  Sum_probs=68.8

Q ss_pred             cCHHHHHHHHHHcCCCcceEEE--ecCC------cccHHHHHHHH-HhCCCcEEEecCCC-HHHHHHHHHcC-CCEEEeC
Q 021156           93 KSAAEFANLYKEDGLTGGHAIM--LGAD------PLSKAAAIEAL-HAYPGGLQVGGGIN-SDNSLSYIEEG-ATHVIVT  161 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvD--Lda~------~~~~~~i~~~v-~~~~~pl~vGGGIr-~e~~~~~l~~G-ad~VVig  161 (316)
                      .+..++++.++++|++.+|+..  .+..      +.......+.+ +.+++|++..|||+ .++++++++.| ||.|.+|
T Consensus       239 ~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~e~a~~~l~~G~aD~V~iG  318 (349)
T 3hgj_A          239 EDTLAFARRLKELGVDLLDCSSGGVVLRVRIPLAPGFQVPFADAVRKRVGLRTGAVGLITTPEQAETLLQAGSADLVLLG  318 (349)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEECCCSCSSSCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCCHHHHHHHHHTTSCSEEEES
T ss_pred             HHHHHHHHHHHHcCCCEEEEecCCcCcccccCCCccccHHHHHHHHHHcCceEEEECCCCCHHHHHHHHHCCCceEEEec
Confidence            3577899999999999888874  2111      11122333444 35789999999998 59999999999 9999999


Q ss_pred             CeeecCCCCCHHHHHHHHHHhc
Q 021156          162 SYVFNNGQMDLERLKDLVRVVG  183 (316)
Q Consensus       162 t~~~~~~~~~~eli~ei~~~~G  183 (316)
                      ..++.|    |+++.++.+.+|
T Consensus       319 R~~lan----Pdl~~k~~~~l~  336 (349)
T 3hgj_A          319 RVLLRD----PYFPLRAAKALG  336 (349)
T ss_dssp             THHHHC----TTHHHHHHHHTT
T ss_pred             HHHHhC----chHHHHHHHHCC
Confidence            999998    999999999986

>1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1

Probab=97.55  E-value=0.0018  Score=57.70  Aligned_cols=128  Identities=17%  Similarity=0.111  Sum_probs=84.3

Q ss_pred             HHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHH---HHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHH
Q 021156          147 SLSYIEEGATHVIVTSYVFNNGQMDLERLKDLV---RVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFL  223 (316)
Q Consensus       147 ~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~---~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~  223 (316)
                      +..+.++||+.|++|-..++.   ....+.+..   ...| =..++++.-                     ..| ...+.
T Consensus        81 ~~~l~~~Ga~~VllghseRR~---~~~e~~~k~~~A~~~G-L~~ivcVge---------------------~~e-~~~~~  134 (225)
T 1hg3_A           81 PEAVKEAGAVGTLLNHSENRM---ILADLEAAIRRAEEVG-LMTMVCSNN---------------------PAV-SAAVA  134 (225)
T ss_dssp             HHHHHHTTCCEEEESCGGGCC---BHHHHHHHHHHHHHHT-CEEEEEESS---------------------HHH-HHHHH
T ss_pred             HHHHHHcCCCEEEECcchhcC---CHHHHHHHHHHHHHCC-CEEEEEeCC---------------------HHH-HHHHh
Confidence            899999999999999877432   122233322   2333 123333321                     112 23455


Q ss_pred             HcCCCEEEEeecCCcccc---CCCCHH---HHHH-Hhhc-CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhcc
Q 021156          224 ASYADEFLVHGVDVEGKK---LGIDDE---LVAL-LGKY-SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFG  295 (316)
Q Consensus       224 ~~Ga~~ilvtdi~~dG~~---~G~d~e---li~~-l~~~-~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~  295 (316)
                      ..+..-|-|..++.-||.   +-+..+   ...+ +++. .+++++++|||.+.+|...+...|  ++|+.||.|+  +.
T Consensus       135 ~~~~~iIayep~waiGtG~~v~t~~~d~~~~~~~~ir~~~~~~~ilyggsV~~~n~~~~~~~~~--vDG~LVG~a~--l~  210 (225)
T 1hg3_A          135 ALNPDYVAVEPPELIGTGIPVSKAKPEVITNTVELVKKVNPEVKVLCGAGISTGEDVKKAIELG--TVGVLLASGV--TK  210 (225)
T ss_dssp             TTCCSEEEECCTTTTTTSCCTTTSCTHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTT--CSEEEESHHH--HT
T ss_pred             cCCCCEEEEeChhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCcHHHHHHHHhCC--CCEEEeCHHH--HC
Confidence            667777779999999987   445443   2222 2222 358999999999999999999988  9999999999  75


Q ss_pred             CcccHHHHHH
Q 021156          296 GNLAYKDVVA  305 (316)
Q Consensus       296 g~~~~~~~~~  305 (316)
                      -. +|.++++
T Consensus       211 a~-~~~~~i~  219 (225)
T 1hg3_A          211 AK-DPEKAIW  219 (225)
T ss_dssp             CS-SHHHHHH
T ss_pred             Cc-CHHHHHH
Confidence            43 4555544

>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*

Probab=97.54  E-value=7e-05  Score=70.99  Aligned_cols=84  Identities=17%  Similarity=0.108  Sum_probs=66.5

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCC-----c-------ccHHHHHHHHHhC-CCcEEEecCCC-HHHHHHHHHcCCCEEE
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGAD-----P-------LSKAAAIEALHAY-PGGLQVGGGIN-SDNSLSYIEEGATHVI  159 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~-----~-------~~~~~i~~~v~~~-~~pl~vGGGIr-~e~~~~~l~~Gad~VV  159 (316)
                      +..++|+.+.++|++.+++-.-.+.     .       .+.+.+.++.+.+ ++||++.|||+ .++++++++ |||.|.
T Consensus       145 ~~~~~a~~l~~aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~~~~~iPVianGgI~s~eda~~~l~-GaD~V~  223 (350)
T 3b0p_A          145 GLAQSVEAMAEAGVKVFVVHARSALLALSTKANREIPPLRHDWVHRLKGDFPQLTFVTNGGIRSLEEALFHLK-RVDGVM  223 (350)
T ss_dssp             HHHHHHHHHHHTTCCEEEEECSCBC----------CCCCCHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHT-TSSEEE
T ss_pred             HHHHHHHHHHHcCCCEEEEecCchhcccCcccccCCCcccHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-CCCEEE
Confidence            4678999999999999988653211     0       1333344444467 89999999998 599999998 999999


Q ss_pred             eCCeeecCCCCCHHHHHHHHHHh
Q 021156          160 VTSYVFNNGQMDLERLKDLVRVV  182 (316)
Q Consensus       160 igt~~~~~~~~~~eli~ei~~~~  182 (316)
                      +|+.++.|    |+++.++.+.+
T Consensus       224 iGRa~l~~----P~l~~~i~~~l  242 (350)
T 3b0p_A          224 LGRAVYED----PFVLEEADRRV  242 (350)
T ss_dssp             ECHHHHHC----GGGGTTHHHHT
T ss_pred             ECHHHHhC----cHHHHHHHHHh
Confidence            99999997    99999998876

>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0

Probab=97.53  E-value=0.00025  Score=61.62  Aligned_cols=86  Identities=23%  Similarity=0.251  Sum_probs=59.4

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCC----c-ccHHHHHHHHHhC-CCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeec
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGAD----P-LSKAAAIEALHAY-PGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~----~-~~~~~i~~~v~~~-~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      .+|.+.++.+.+.|++.+++ +-...    . .....+.++.+.. ++|++++|||+.+++.+++++|||.+++||+.++
T Consensus       114 ~t~~~~~~~~~~~g~d~i~v-~~g~~g~~~~~~~~~~i~~l~~~~~~~~i~~~gGI~~~~~~~~~~~Gad~vvvGsai~~  192 (211)
T 3f4w_A          114 DDLPARVRLLEEAGADMLAV-HTGTDQQAAGRKPIDDLITMLKVRRKARIAVAGGISSQTVKDYALLGPDVVIVGSAITH  192 (211)
T ss_dssp             SSHHHHHHHHHHHTCCEEEE-ECCHHHHHTTCCSHHHHHHHHHHCSSCEEEEESSCCTTTHHHHHTTCCSEEEECHHHHT
T ss_pred             CCHHHHHHHHHHcCCCEEEE-cCCCcccccCCCCHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHcCCCEEEECHHHcC
Confidence            46888899999999887544 21100    1 1233343333444 7999999999989999999999999999999886


Q ss_pred             CCCCCH-HHHHHHHHH
Q 021156          167 NGQMDL-ERLKDLVRV  181 (316)
Q Consensus       167 ~~~~~~-eli~ei~~~  181 (316)
                      ..  || +.++++.+.
T Consensus       193 ~~--d~~~~~~~l~~~  206 (211)
T 3f4w_A          193 AA--DPAGEARKISQV  206 (211)
T ss_dssp             CS--SHHHHHHHHHHH
T ss_pred             CC--CHHHHHHHHHHH
Confidence            42  23 345555443

>1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A

Probab=97.53  E-value=0.00059  Score=64.42  Aligned_cols=150  Identities=13%  Similarity=0.037  Sum_probs=106.8

Q ss_pred             CcEEEecCCC-H----HHHHHHHHcCCCEEEe--CC-eeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeC
Q 021156          134 GGLQVGGGIN-S----DNSLSYIEEGATHVIV--TS-YVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTD  205 (316)
Q Consensus       134 ~pl~vGGGIr-~----e~~~~~l~~Gad~VVi--gt-~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~  205 (316)
                      +|+..-+|.. .    +.++++.+.|.+.+=+  |. ....    +.+.++.+.+.+|+ .+-+.+|+.          .
T Consensus       134 vp~~~~~g~~~~~~~~~~a~~~~~~Gf~~iKik~g~~~~~~----~~e~v~avr~a~g~-~~~l~vDan----------~  198 (359)
T 1mdl_A          134 VQAYDSHSLDGVKLATERAVTAAELGFRAVKTRIGYPALDQ----DLAVVRSIRQAVGD-DFGIMVDYN----------Q  198 (359)
T ss_dssp             EEEEEECCSCHHHHHHHHHHHHHHTTCSEEEEECCCSSHHH----HHHHHHHHHHHHCS-SSEEEEECT----------T
T ss_pred             eeeeeecCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCHHH----HHHHHHHHHHHhCC-CCEEEEECC----------C
Confidence            4554335554 2    3467778899887654  32 1222    37888888888975 455678873          3


Q ss_pred             CcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEE
Q 021156          206 RWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDV  285 (316)
Q Consensus       206 gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gV  285 (316)
                      +|...   +..++++.+.+.|+..+       +.-....|++.++++++.+++||++.+.+.+.+++.++++.+ .++.+
T Consensus       199 ~~~~~---~a~~~~~~l~~~~i~~i-------E~P~~~~~~~~~~~l~~~~~iPI~~de~~~~~~~~~~~i~~~-~~d~v  267 (359)
T 1mdl_A          199 SLDVP---AAIKRSQALQQEGVTWI-------EEPTLQHDYEGHQRIQSKLNVPVQMGENWLGPEEMFKALSIG-ACRLA  267 (359)
T ss_dssp             CSCHH---HHHHHHHHHHHHTCSCE-------ECCSCTTCHHHHHHHHHTCSSCEEECTTCCSHHHHHHHHHTT-CCSEE
T ss_pred             CCCHH---HHHHHHHHHHHhCCCeE-------ECCCChhhHHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcC-CCCEE
Confidence            56432   46678889999898854       111223489999999998999999999999999999999988 58889


Q ss_pred             EEccchhhccCcccHHHHHHHHHhhc
Q 021156          286 TVGSALDIFGGNLAYKDVVAWHAQQE  311 (316)
Q Consensus       286 ivG~Al~~~~g~~~~~~~~~~~~~~~  311 (316)
                      .+-.+-  .+|.....++.++++++.
T Consensus       268 ~ik~~~--~GGi~~~~~i~~~A~~~g  291 (359)
T 1mdl_A          268 MPDAMK--IGGVTGWIRASALAQQFG  291 (359)
T ss_dssp             CCBTTT--TTHHHHHHHHHHHHHHTT
T ss_pred             eecchh--hCCHHHHHHHHHHHHHcC
Confidence            988777  666666667766666644

>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*

Probab=97.49  E-value=0.00022  Score=81.06  Aligned_cols=167  Identities=15%  Similarity=0.072  Sum_probs=107.3

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCC-cccHHHH---HHHHHh-C--CCcEEEecCC-C-H------HHHHHHHHcCCCE-
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGAD-PLSKAAA---IEALHA-Y--PGGLQVGGGI-N-S------DNSLSYIEEGATH-  157 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~-~~~~~~i---~~~v~~-~--~~pl~vGGGI-r-~------e~~~~~l~~Gad~-  157 (316)
                      +| ++|...+++|..+    -|.+. ....+.+   ++.+++ .  +.|+.+.=-+ . .      +.++.+.+.|+.. 
T Consensus       596 ~~-~LaaAva~aGglG----~i~g~g~~~~e~l~~~i~~vk~~~~~~~p~gvN~~~~~p~~~~~~~~~~~~~~~~gv~i~  670 (2060)
T 2uva_G          596 PW-DFVAATMNAGYHI----ELAGGGYYNAQKMSDAISKIEKAIPPGRGITVNLIYVNPRAMGWQIPLLGRLRADGVPIE  670 (2060)
T ss_dssp             SH-HHHHHHHHTTCEE----CEEGGGCCSHHHHHHHHHHHGGGSCTTCCEEEEEETTCTTHHHHHHHHHHHHHTTTCCEE
T ss_pred             cH-HHHHHHHHCCCEE----EECcCCCCCHHHHHHHHHHHHhhcccCCCeEecccccCcccchhHHHHHHHHHHcCCCcc
Confidence            45 4888888888332    23111 1222333   333333 4  3677776555 2 1      3477788899998 


Q ss_pred             -EEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEE---Ee
Q 021156          158 -VIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFL---VH  233 (316)
Q Consensus       158 -VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~il---vt  233 (316)
                       |+++.-.-.     ++.+.++.+..|- .++..+.     +             ..+..+.+..+.+.|++.++   +.
T Consensus       671 gv~~~~G~p~-----~e~~~~~l~~~gi-~~i~~v~-----~-------------~~~a~~~v~~l~~aG~D~iV~~q~~  726 (2060)
T 2uva_G          671 GLTIGAGVPS-----IEVANEYIQTLGI-RHISFKP-----G-------------SVDAIQQVINIAKANPTFPIILQWT  726 (2060)
T ss_dssp             EEEEESSCCC-----HHHHHHHHHHSCC-SEEEECC-----C-------------SHHHHHHHHHHHHHCTTSCEEEEEC
T ss_pred             eEeecCCCCC-----HHHHHHHHHHcCC-eEEEecC-----C-------------HHHHHHHHHHHHHcCCCEEEEeeeE
Confidence             666443211     4445666666652 2222111     1             12345556677899999988   66


Q ss_pred             ecCCccccCCCC-----HHHHHHHhhcCCCcEEEEeCCCCHHHHHHHH-----------HhCCCcCEEEEccch
Q 021156          234 GVDVEGKKLGID-----DELVALLGKYSPIPVTYAGGVTTMADLEKIK-----------VAGIGRVDVTVGSAL  291 (316)
Q Consensus       234 di~~dG~~~G~d-----~eli~~l~~~~~iPVIasGGI~s~eDi~~l~-----------~~G~g~~gVivG~Al  291 (316)
                      ..+.-|.....|     ++++.++++..++|||++|||.+.+|+.+++           .+|  +++|.+|+++
T Consensus       727 G~eaGGH~g~~d~~~~~l~lv~~i~~~~~ipviaaGGI~~g~~i~aaltg~ws~~~g~palG--AdgV~~GT~f  798 (2060)
T 2uva_G          727 GGRGGGHHSFEDFHQPILLMYSRIRKCSNIVLVAGSGFGGSEDTYPYLTGSWSTKFGYPPMP--FDGCMFGSRM  798 (2060)
T ss_dssp             CTTSSSSCCSCCSHHHHHHHHHHHHTSTTEEEEEESSCCSHHHHHHHHHTCGGGTTTSCCCC--CSCEEESGGG
T ss_pred             cccCCCCCCcccccchHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHhcCcchhhcCCCCCC--CCEEEEchhh
Confidence            666555533122     5688899998999999999999999999999           888  9999999988

>2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A

Probab=97.48  E-value=0.00061  Score=64.69  Aligned_cols=150  Identities=14%  Similarity=0.095  Sum_probs=106.5

Q ss_pred             CcEEEecCC---CH----HHHHHHHHcCCCEEEe--CC-eeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEE
Q 021156          134 GGLQVGGGI---NS----DNSLSYIEEGATHVIV--TS-YVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIV  203 (316)
Q Consensus       134 ~pl~vGGGI---r~----e~~~~~l~~Gad~VVi--gt-~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~  203 (316)
                      +|+..-||.   ..    +.++++.+.|.+.+=+  |. ....    +.+.++.+.+.+|++ +-+.+|+.         
T Consensus       134 v~~y~~~~~~~~~~e~~~~~a~~~~~~Gf~~iKik~g~~~~~~----~~e~v~avr~a~G~d-~~l~vDan---------  199 (371)
T 2ovl_A          134 VPVYAGGIDLELPVADLKTQADRFLAGGFRAIKMKVGRPDLKE----DVDRVSALREHLGDS-FPLMVDAN---------  199 (371)
T ss_dssp             EEEEEECCBTTSCHHHHHHHHHHHHHTTCSCEEEECCCSSHHH----HHHHHHHHHHHHCTT-SCEEEECT---------
T ss_pred             eeEEEeCCCcCCCHHHHHHHHHHHHHcCCCEEEECCCCCCHHH----HHHHHHHHHHHhCCC-CeEEEECC---------
Confidence            455444554   32    4567778889886544  43 1122    378888888889754 44678873         


Q ss_pred             eCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcC
Q 021156          204 TDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRV  283 (316)
Q Consensus       204 ~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~  283 (316)
                       .+|...   +..++++.+.+.|+..+       +.-....|++.++++++.+++||.+.+.+.+.++++++++.+ .++
T Consensus       200 -~~~~~~---~a~~~~~~l~~~~i~~i-------EqP~~~~d~~~~~~l~~~~~iPI~~dE~~~~~~~~~~~i~~~-~~d  267 (371)
T 2ovl_A          200 -MKWTVD---GAIRAARALAPFDLHWI-------EEPTIPDDLVGNARIVRESGHTIAGGENLHTLYDFHNAVRAG-SLT  267 (371)
T ss_dssp             -TCSCHH---HHHHHHHHHGGGCCSEE-------ECCSCTTCHHHHHHHHHHHCSCEEECTTCCSHHHHHHHHHHT-CCS
T ss_pred             -CCCCHH---HHHHHHHHHHhcCCCEE-------ECCCCcccHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcC-CCC
Confidence             356432   46688889989888854       111223489999999988899999999999999999999998 488


Q ss_pred             EEEEccchhhccCcccHHHHHHHHHhhc
Q 021156          284 DVTVGSALDIFGGNLAYKDVVAWHAQQE  311 (316)
Q Consensus       284 gVivG~Al~~~~g~~~~~~~~~~~~~~~  311 (316)
                      .+.+..+-  .+|.....++.++++++.
T Consensus       268 ~v~ik~~~--~GGi~~~~~i~~~A~~~g  293 (371)
T 2ovl_A          268 LPEPDVSN--IGGYTTFRKVAALAEANN  293 (371)
T ss_dssp             EECCCTTT--TTSHHHHHHHHHHHHHTT
T ss_pred             EEeeCccc--cCCHHHHHHHHHHHHHcC
Confidence            89888877  777666677777766644

>2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens}

Probab=97.47  E-value=0.00079  Score=64.12  Aligned_cols=136  Identities=9%  Similarity=0.015  Sum_probs=99.4

Q ss_pred             HHHHHHHHcCCCEEEe--CCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH
Q 021156          145 DNSLSYIEEGATHVIV--TSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF  222 (316)
Q Consensus       145 e~~~~~l~~Gad~VVi--gt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~  222 (316)
                      +.++++.++|.+.+=+  |.....    +.+.++.+.+.+|+ .+.+.+|+.          .+|...   +..++++.+
T Consensus       151 ~~a~~~~~~Gf~~iKik~g~~~~~----~~e~v~avr~a~g~-d~~l~vDan----------~~~~~~---~a~~~~~~l  212 (379)
T 2rdx_A          151 AELARHRAAGYRQFQIKVGADWQS----DIDRIRACLPLLEP-GEKAMADAN----------QGWRVD---NAIRLARAT  212 (379)
T ss_dssp             HHHHHHHHTTCCEEEEECCSCHHH----HHHHHHHHGGGSCT-TCEEEEECT----------TCSCHH---HHHHHHHHT
T ss_pred             HHHHHHHHcCCCEEEEeccCCHHH----HHHHHHHHHHhcCC-CCEEEEECC----------CCCCHH---HHHHHHHHH
Confidence            5577888999987655  322222    36788888888874 455678873          356432   356788888


Q ss_pred             HHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHH
Q 021156          223 LASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKD  302 (316)
Q Consensus       223 ~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~  302 (316)
                      .+.|+ .+  -    +. +.  |++.++++++.+++||++.+.+.+.++++++++.+ .++.+.+--+.  .+|.....+
T Consensus       213 ~~~~i-~i--E----~P-~~--~~~~~~~l~~~~~iPI~~de~i~~~~~~~~~i~~~-~~d~v~ik~~~--~GGit~~~~  279 (379)
T 2rdx_A          213 RDLDY-IL--E----QP-CR--SYEECQQVRRVADQPMKLDECVTGLHMAQRIVADR-GAEICCLKISN--LGGLSKARR  279 (379)
T ss_dssp             TTSCC-EE--E----CC-SS--SHHHHHHHHTTCCSCEEECTTCCSHHHHHHHHHHT-CCSEEEEETTT--TTSHHHHHH
T ss_pred             HhCCe-EE--e----CC-cC--CHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHcC-CCCEEEEeccc--cCCHHHHHH
Confidence            88887 33  1    11 22  99999999998999999999999999999999988 48889998887  777666666


Q ss_pred             HHHHHHhhc
Q 021156          303 VVAWHAQQE  311 (316)
Q Consensus       303 ~~~~~~~~~  311 (316)
                      +.++++++.
T Consensus       280 i~~~A~~~g  288 (379)
T 2rdx_A          280 TRDFLIDNR  288 (379)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHcC
Confidence            666666543

>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A

Probab=97.47  E-value=0.00013  Score=65.10  Aligned_cols=73  Identities=18%  Similarity=0.173  Sum_probs=52.3

Q ss_pred             CHHHHHHHHHHcCCC-cceEEEecCC--c-----ccHHHHHHHH-HhCCCcEEEecCCCH-HHHHHHHHcCCCEEEeCCe
Q 021156           94 SAAEFANLYKEDGLT-GGHAIMLGAD--P-----LSKAAAIEAL-HAYPGGLQVGGGINS-DNSLSYIEEGATHVIVTSY  163 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~-~l~lvDLda~--~-----~~~~~i~~~v-~~~~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~  163 (316)
                      +|.+.++.+... ++ .+|++.+++.  .     ++....++.+ +..++|+++||||+. +++.+++++||+.|++||+
T Consensus       144 t~~e~~~~~~~~-~d~~i~~~~~~G~~g~~~~~~~~~~~~i~~l~~~~~~pi~~~GGI~~~e~i~~~~~~Gad~vivGsa  222 (248)
T 1geq_A          144 TPDERLKVIDDM-TTGFVYLVSLYGTTGAREEIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSA  222 (248)
T ss_dssp             CCHHHHHHHHHH-CSSEEEEECCC-------CCCHHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEECHH
T ss_pred             CHHHHHHHHHhc-CCCeEEEEECCccCCCCCCCChhHHHHHHHHHhhcCCCEEEEeecCCHHHHHHHHHcCCCEEEEcHH
Confidence            577787777665 44 6667666542  1     1122233444 456899999999996 9999999999999999999


Q ss_pred             eecC
Q 021156          164 VFNN  167 (316)
Q Consensus       164 ~~~~  167 (316)
                      .++.
T Consensus       223 i~~~  226 (248)
T 1geq_A          223 LVKI  226 (248)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            8864

>1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1

Probab=97.45  E-value=0.0014  Score=58.30  Aligned_cols=128  Identities=17%  Similarity=0.128  Sum_probs=83.7

Q ss_pred             HHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHH---HHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHH
Q 021156          147 SLSYIEEGATHVIVTSYVFNNGQMDLERLKDLV---RVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFL  223 (316)
Q Consensus       147 ~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~---~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~  223 (316)
                      +..+.++||+.|++|-..++.   ....+.+..   ...| =..++++.-                     ..| ...+.
T Consensus        78 ~~~l~~~Ga~~VllghseRR~---~~~e~~~k~~~A~~~G-L~~ivcVge---------------------~~e-~~~~~  131 (226)
T 1w0m_A           78 LENIKEAGGSGVILNHSEAPL---KLNDLARLVAKAKSLG-LDVVVCAPD---------------------PRT-SLAAA  131 (226)
T ss_dssp             HHHHHHHTCCEEEECCTTSCC---BHHHHHHHHHHHHHTT-CEEEEEESS---------------------HHH-HHHHH
T ss_pred             HHHHHHcCCCEEEEeeeeccC---CHHHHHHHHHHHHHCC-CEEEEEeCC---------------------HHH-HHHHh
Confidence            889999999999999876432   122233332   2233 123333321                     112 23456


Q ss_pred             HcCCCEEEEeecCCcccc---CCCCHHHHH---H-Hhhc-CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhcc
Q 021156          224 ASYADEFLVHGVDVEGKK---LGIDDELVA---L-LGKY-SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFG  295 (316)
Q Consensus       224 ~~Ga~~ilvtdi~~dG~~---~G~d~eli~---~-l~~~-~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~  295 (316)
                      ..+..-|-|..++.-||.   +-+..+.++   + +++. .+++++++|||.+.+|...+...|  ++|+.||.|+  +.
T Consensus       132 ~~~~~iIayep~waiGtG~~v~t~~~d~~~~~~~~ir~~~~~~~ilyggsV~~~n~~~~~~~~g--iDG~LVG~a~--l~  207 (226)
T 1w0m_A          132 ALGPHAVAVEPPELIGTGRAVSRYKPEAIVETVGLVSRHFPEVSVITGAGIESGDDVAAALRLG--TRGVLLASAA--VK  207 (226)
T ss_dssp             HTCCSEEEECCGGGTTTSCCHHHHCHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTT--CSEEEECHHH--HT
T ss_pred             cCCCCEEEEcChhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCcHHHHHHHHhCC--CCEEEECHHH--HC
Confidence            667777779999999886   334444222   2 2222 358999999999999999999998  9999999999  75


Q ss_pred             CcccHHHHHH
Q 021156          296 GNLAYKDVVA  305 (316)
Q Consensus       296 g~~~~~~~~~  305 (316)
                      -. +|.++++
T Consensus       208 a~-~~~~~i~  216 (226)
T 1w0m_A          208 AK-DPYAKIV  216 (226)
T ss_dssp             CS-SHHHHHH
T ss_pred             Cc-CHHHHHH
Confidence            43 4555444

>3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A*

Probab=97.43  E-value=0.0011  Score=63.44  Aligned_cols=139  Identities=13%  Similarity=0.043  Sum_probs=102.3

Q ss_pred             HHHHHHHHcCCCEE--EeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH
Q 021156          145 DNSLSYIEEGATHV--IVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF  222 (316)
Q Consensus       145 e~~~~~l~~Gad~V--Vigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~  222 (316)
                      +.++++.+.|...+  =+|.....+    .+.++.+.+.+|++ +.+.+|+.          .+|...   +..++++.+
T Consensus       157 ~~a~~~~~~G~~~iKiKvG~~~~~d----~~~v~avR~a~g~d-~~l~vDan----------~~~~~~---~A~~~~~~l  218 (389)
T 3ozy_A          157 DELAGWVEQGFTAAKLKVGRAPRKD----AANLRAMRQRVGAD-VEILVDAN----------QSLGRH---DALAMLRIL  218 (389)
T ss_dssp             HHHHHHHHTTCSEEEEECCSCHHHH----HHHHHHHHHHHCTT-SEEEEECT----------TCCCHH---HHHHHHHHH
T ss_pred             HHHHHHHHCCCCEEeeccCCCHHHH----HHHHHHHHHHcCCC-ceEEEECC----------CCcCHH---HHHHHHHHH
Confidence            44677788898854  346533343    78899999999854 55778873          356532   366788999


Q ss_pred             HHcCCCEEEEeecCCccccCCCCHHHHHHHh-hcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHH
Q 021156          223 LASYADEFLVHGVDVEGKKLGIDDELVALLG-KYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYK  301 (316)
Q Consensus       223 ~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~-~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~  301 (316)
                      .+.|+..+  -     .-....|++.+++++ +.+++||.+.+.+.+.+|+.++++.+ .++.+.+--+.  .+|-....
T Consensus       219 ~~~~i~~i--E-----qP~~~~d~~~~~~l~~~~~~iPIa~dE~i~~~~~~~~~i~~~-~~d~v~ik~~~--~GGit~~~  288 (389)
T 3ozy_A          219 DEAGCYWF--E-----EPLSIDDIEGHRILRAQGTPVRIATGENLYTRNAFNDYIRND-AIDVLQADASR--AGGITEAL  288 (389)
T ss_dssp             HHTTCSEE--E-----SCSCTTCHHHHHHHHTTCCSSEEEECTTCCHHHHHHHHHHTT-CCSEECCCTTT--SSCHHHHH
T ss_pred             HhcCCCEE--E-----CCCCcccHHHHHHHHhcCCCCCEEeCCCCCCHHHHHHHHHcC-CCCEEEeCccc--cCCHHHHH
Confidence            99998755  1     122234899999999 88999999999999999999999988 48888888777  77765666


Q ss_pred             HHHHHHHhhc
Q 021156          302 DVVAWHAQQE  311 (316)
Q Consensus       302 ~~~~~~~~~~  311 (316)
                      ++.++++++.
T Consensus       289 ~ia~~A~~~g  298 (389)
T 3ozy_A          289 AISASAASAH  298 (389)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHcC
Confidence            6666666543

>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4

Probab=97.42  E-value=0.0014  Score=59.27  Aligned_cols=94  Identities=14%  Similarity=-0.008  Sum_probs=75.1

Q ss_pred             CCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCE
Q 021156          205 DRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVD  284 (316)
Q Consensus       205 ~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~g  284 (316)
                      +||-..  .++.++++.+++.|+..+  +-.+.++.++| ..+.++.+++.+++||+..++|.+..++..++..|  +++
T Consensus        59 kg~i~~--~~p~~~A~~~~~~GA~~i--svlt~~~~f~G-~~~~l~~i~~~v~lPvl~kdfI~d~~qi~~a~~~G--AD~  131 (254)
T 1vc4_A           59 EGLIRE--VDPVEAALAYARGGARAV--SVLTEPHRFGG-SLLDLKRVREAVDLPLLRKDFVVDPFMLEEARAFG--ASA  131 (254)
T ss_dssp             TCCCCS--CCHHHHHHHHHHTTCSEE--EEECCCSSSCC-CHHHHHHHHHHCCSCEEEESCCCSHHHHHHHHHTT--CSE
T ss_pred             CCcCCC--CCHHHHHHHHHHcCCCEE--EEecchhhhcc-CHHHHHHHHHhcCCCEEECCcCCCHHHHHHHHHcC--CCE
Confidence            477543  589999999999999977  33455556555 55677788888999999999999999999999998  999


Q ss_pred             EEEccchhhccCcccHHHHHHHHHh
Q 021156          285 VTVGSALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       285 VivG~Al~~~~g~~~~~~~~~~~~~  309 (316)
                      |.++.+.  +.  -.++++.+..+.
T Consensus       132 VlL~~~~--l~--~~l~~l~~~a~~  152 (254)
T 1vc4_A          132 ALLIVAL--LG--ELTGAYLEEARR  152 (254)
T ss_dssp             EEEEHHH--HG--GGHHHHHHHHHH
T ss_pred             EEECccc--hH--HHHHHHHHHHHH
Confidence            9999998  76  367777665544

>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A*

Probab=97.41  E-value=0.00011  Score=67.61  Aligned_cols=81  Identities=17%  Similarity=0.254  Sum_probs=46.3

Q ss_pred             HHHHHHhCCCcEE--EecCCC-HHHHHHHHHcCCCEEEeCCeeecCCC---------------CCHHHHHHHHHHhcCce
Q 021156          125 AIEALHAYPGGLQ--VGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQ---------------MDLERLKDLVRVVGKQR  186 (316)
Q Consensus       125 i~~~v~~~~~pl~--vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~---------------~~~eli~ei~~~~G~~~  186 (316)
                      +.+..+..++|++  +.|||+ .+++.+++++||+.|++||++++.+.               .+++.+..+.+.+|.. 
T Consensus       199 i~~l~~~~~~pvi~~a~GGI~~~e~i~~~~~aGadgvvvGsai~~~~dp~~~~~~l~~~i~~~~~~~~~~~~~~~~g~~-  277 (297)
T 2zbt_A          199 VKWVHDHGRLPVVNFAAGGIATPADAALMMHLGMDGVFVGSGIFKSGDPRKRARAIVRAVAHYNDPEVLAEVSEDLGEP-  277 (297)
T ss_dssp             HHHHHHHSSCSSCEEBCSSCCSHHHHHHHHHTTCSEEEECGGGGGSSCHHHHHHHHHHHHHTTTCHHHHHHHHTTCCCC-
T ss_pred             HHHHHHhcCCCcEEEeeCCCCCHHHHHHHHHcCCCEEEEchHHhCCCCHHHHHHHHHHHHHHHhchHhhhHHHHhcCce-
Confidence            4343445678887  999996 69999999999999999999984310               2456667777777744 


Q ss_pred             EEEeeeeeecCCeeEEEeCCc
Q 021156          187 LVLDLSCRKKDGKYAIVTDRW  207 (316)
Q Consensus       187 IvvslD~k~~~g~~~v~~~gw  207 (316)
                       ++++|.+....+++|.++||
T Consensus       278 -~~~~~~~~~~~~~~~~~~~~  297 (297)
T 2zbt_A          278 -MVGINLDQLKEEERLAKRGW  297 (297)
T ss_dssp             -C-------------------
T ss_pred             -eEEeechhcccccceeccCC
Confidence             78999872101127888888

>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1

Probab=97.37  E-value=0.00013  Score=68.18  Aligned_cols=84  Identities=14%  Similarity=0.122  Sum_probs=65.4

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCC-----cccHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHH-cCCCEEEeCCeee
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGAD-----PLSKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIE-EGATHVIVTSYVF  165 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~-----~~~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~-~Gad~VVigt~~~  165 (316)
                      .++.++|+.+.++|++.+++-.-...     ..+. ..++.+++ ++||++.|||+ .+|++++++ .|||.|.+|+.++
T Consensus       140 ~~~~~~a~~l~~~G~d~i~v~g~~~~~~~~~~~~~-~~i~~i~~-~ipVi~~GgI~s~~da~~~l~~~gad~V~iGR~~l  217 (318)
T 1vhn_A          140 NEVEEIYRILVEEGVDEVFIHTRTVVQSFTGRAEW-KALSVLEK-RIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAI  217 (318)
T ss_dssp             CCHHHHHHHHHHTTCCEEEEESSCTTTTTSSCCCG-GGGGGSCC-SSCEEEESSCCSHHHHHHHHHHHCCSEEEESGGGT
T ss_pred             HHHHHHHHHHHHhCCCEEEEcCCCccccCCCCcCH-HHHHHHHc-CCeEEEECCcCCHHHHHHHHHcCCCCEEEECHHHH
Confidence            35668999999999999888532111     1233 23333444 89999999998 599999998 7999999999999


Q ss_pred             cCCCCCHHHHHHHHHHh
Q 021156          166 NNGQMDLERLKDLVRVV  182 (316)
Q Consensus       166 ~~~~~~~eli~ei~~~~  182 (316)
                      .|    |+++.++.+.+
T Consensus       218 ~~----P~l~~~~~~~~  230 (318)
T 1vhn_A          218 GR----PWIFKQIKDFL  230 (318)
T ss_dssp             TC----TTHHHHHHHHH
T ss_pred             hC----cchHHHHHHHH
Confidence            97    99999998765

>2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily; structural genomics, predicted mandelate racemase, PSI; 2.02A {Rhodobacter sphaeroides}

Probab=97.36  E-value=0.0014  Score=62.81  Aligned_cols=139  Identities=10%  Similarity=-0.047  Sum_probs=101.9

Q ss_pred             HHHHHHHHcCCCEEEe-----CCee-ecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCc--ceecccCHH
Q 021156          145 DNSLSYIEEGATHVIV-----TSYV-FNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRW--QKFSDVYLD  216 (316)
Q Consensus       145 e~~~~~l~~Gad~VVi-----gt~~-~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw--~~~~~~~~~  216 (316)
                      +.++++.+.|.+.+=+     |... ..    +.+.++.+.+.+|+ .+-+.+|+.          .+|  ...   +..
T Consensus       151 ~~a~~~~~~Gf~~iKik~spvG~~~~~~----~~e~v~avr~a~G~-d~~l~vDan----------~~~~~~~~---~a~  212 (401)
T 2hzg_A          151 ERARAARRDGFAAVKFGWGPIGRGTVAA----DADQIMAAREGLGP-DGDLMVDVG----------QIFGEDVE---AAA  212 (401)
T ss_dssp             HHHHHHHHTTCSEEEEESTTTTSSCHHH----HHHHHHHHHHHHCS-SSEEEEECT----------TTTTTCHH---HHH
T ss_pred             HHHHHHHHhCCCeEEEcCCCCCCCHHHH----HHHHHHHHHHHhCC-CCeEEEECC----------CCCCCCHH---HHH
Confidence            4577888899887643     4322 22    37889999999975 456778873          356  432   356


Q ss_pred             HHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhh-cCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhcc
Q 021156          217 ERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGK-YSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFG  295 (316)
Q Consensus       217 e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~-~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~  295 (316)
                      ++++.+.+.|+..+  -     .-....|++.++++++ .+++||.+.+.+.+.++++++++.+ .++.+.+--+.  .+
T Consensus       213 ~~~~~l~~~~i~~i--E-----qP~~~~d~~~~~~l~~~~~~iPI~~dE~~~~~~~~~~~i~~~-~~d~v~ik~~~--~G  282 (401)
T 2hzg_A          213 ARLPTLDAAGVLWL--E-----EPFDAGALAAHAALAGRGARVRIAGGEAAHNFHMAQHLMDYG-RIGFIQIDCGR--IG  282 (401)
T ss_dssp             TTHHHHHHTTCSEE--E-----CCSCTTCHHHHHHHHTTCCSSEEEECTTCSSHHHHHHHHHHS-CCSEEEECHHH--HT
T ss_pred             HHHHHHHhcCCCEE--E-----CCCCccCHHHHHHHHhhCCCCCEEecCCcCCHHHHHHHHHCC-CCCEEEeCcch--hC
Confidence            78888999998854  1     1122348999999998 8899999999999999999999988 48889988777  66


Q ss_pred             CcccHHHHHHHHHhhc
Q 021156          296 GNLAYKDVVAWHAQQE  311 (316)
Q Consensus       296 g~~~~~~~~~~~~~~~  311 (316)
                      |.....++.++++++.
T Consensus       283 Git~~~~i~~~A~~~g  298 (401)
T 2hzg_A          283 GLGPAKRVADAAQARG  298 (401)
T ss_dssp             SHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHcC
Confidence            6555666666666543

>1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: CIT; 1.65A {Thermotoga maritima} SCOP: c.1.29.1

Probab=97.35  E-value=7e-05  Score=64.83  Aligned_cols=101  Identities=7%  Similarity=-0.000  Sum_probs=71.0

Q ss_pred             cCCCCCCccccccccccCcccccccccEEEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCC
Q 021156           28 HKNNNSSFYAPSSSLSRPSRLSVRCAVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGL  107 (316)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~  107 (316)
                      ...||+++|+.+.. .++.  .++..++-||.+.+.+....                           ...++.......
T Consensus        80 ~~~~pdGIIsTk~~-~i~~--Akk~GL~tIqR~FliDs~al---------------------------~~~~~~I~~~kP  129 (188)
T 1vkf_A           80 KKAGADGIITIKPK-NYVV--AKKNGIPAVLRFFALDSKAV---------------------------ERGIEQIETLGV  129 (188)
T ss_dssp             HHHTCSEEEESCHH-HHHH--HHHTTCCEEEEEECCSHHHH---------------------------HHHHHHHHHHTC
T ss_pred             HhcCCCEEEcCcHH-HHHH--HHHcCCEEeeEEEEEEeHHH---------------------------hhhhhhccccCC
Confidence            77899999999999 7777  48899999999887655211                           112222233344


Q ss_pred             CcceEEEecCCcccHHHHHHHHHhCCCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeee
Q 021156          108 TGGHAIMLGADPLSKAAAIEALHAYPGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVF  165 (316)
Q Consensus       108 ~~l~lvDLda~~~~~~~i~~~v~~~~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~  165 (316)
                      +-+-+  |.+  ...+.+++.+  .++|+++||+||+ |++++ +++||+.|+.++..+
T Consensus       130 D~iEi--LPg--~v~p~~I~~v--~~~PiIaGGlI~t~edv~~-l~aGA~aIsTs~~~L  181 (188)
T 1vkf_A          130 DVVEV--LPG--AVAPKVARKI--PGRTVIAAGLVETEEEARE-ILKHVSAISTSSRIL  181 (188)
T ss_dssp             SEEEE--ESG--GGHHHHHTTS--TTSEEEEESCCCSHHHHHH-HTTTSSEEEECCHHH
T ss_pred             CeEee--cCC--CchHHHHHHh--cCCCEEEECCcCCHHHHHH-HHCCCeEEEeCCHHH
Confidence            43222  211  2255666666  6889999999995 99999 999999999888543

>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1

Probab=97.34  E-value=0.00068  Score=61.41  Aligned_cols=71  Identities=13%  Similarity=0.191  Sum_probs=51.2

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecC---C--cccHHHHHHHH-HhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeee
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGA---D--PLSKAAAIEAL-HAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVF  165 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda---~--~~~~~~i~~~v-~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~  165 (316)
                      +||. +++++++.|++-+  ..+..   .  ...+..+++.+ +..++|++++|||. .+|+..+++.||+-|++||+..
T Consensus       144 dd~~-~akrl~~~G~~aV--mPlg~pIGsG~Gi~~~~lI~~I~e~~~vPVI~eGGI~TPsDAa~AmeLGAdgVlVgSAI~  220 (265)
T 1wv2_A          144 DDPI-IARQLAEIGCIAV--MPLAGLIGSGLGICNPYNLRIILEEAKVPVLVDAGVGTASDAAIAMELGCEAVLMNTAIA  220 (265)
T ss_dssp             SCHH-HHHHHHHSCCSEE--EECSSSTTCCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHHTCSEEEESHHHH
T ss_pred             CCHH-HHHHHHHhCCCEE--EeCCccCCCCCCcCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEChHHh
Confidence            4565 7777777776633  44432   1  12234454555 46789999999998 5999999999999999999886


Q ss_pred             c
Q 021156          166 N  166 (316)
Q Consensus       166 ~  166 (316)
                      +
T Consensus       221 ~  221 (265)
T 1wv2_A          221 H  221 (265)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*

Probab=97.34  E-value=0.00035  Score=64.66  Aligned_cols=84  Identities=14%  Similarity=0.161  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHcCCCcceEEEe-------c--CC---------------ccc---HHHHHHHHH-hC--CCcEEEecCCCH
Q 021156           95 AAEFANLYKEDGLTGGHAIML-------G--AD---------------PLS---KAAAIEALH-AY--PGGLQVGGGINS  144 (316)
Q Consensus        95 p~e~a~~~~~~G~~~l~lvDL-------d--a~---------------~~~---~~~i~~~v~-~~--~~pl~vGGGIr~  144 (316)
                      ..++|+.+.++|++.+.+.+.       |  ..               ...   ....++.++ .+  ++||+..|||++
T Consensus       174 ~~~~a~~~~~~G~d~i~v~~~~~~g~~i~~~~~~~~~~~~~~~gG~sg~~~~~~~~~~i~~v~~~~~~~ipvi~~GGI~~  253 (311)
T 1jub_A          174 FDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIET  253 (311)
T ss_dssp             HHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHTTSCTTSEEEEESSCCS
T ss_pred             HHHHHHHHHHcCCcEEEecCCCCcCceeccCCCCcccccCCCCCccccccccHHHHHHHHHHHHhcCCCCCEEEECCCCC
Confidence            445688888899999877432       2  11               011   122334444 56  799999999984


Q ss_pred             -HHHHHHHHcCCCEEEeCCeeec-CCCCCHHHHHHHHHHh
Q 021156          145 -DNSLSYIEEGATHVIVTSYVFN-NGQMDLERLKDLVRVV  182 (316)
Q Consensus       145 -e~~~~~l~~Gad~VVigt~~~~-~~~~~~eli~ei~~~~  182 (316)
                       +|+.+++.+|||.|.+|+.++. +    |.+++++.+..
T Consensus       254 ~~da~~~l~~GAd~V~vg~~~l~~~----p~~~~~i~~~l  289 (311)
T 1jub_A          254 GQDAFEHLLCGATMLQIGTALHKEG----PAIFDRIIKEL  289 (311)
T ss_dssp             HHHHHHHHHHTCSEEEECHHHHHHC----THHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCEEEEchHHHhcC----cHHHHHHHHHH
Confidence             9999999999999999999995 7    88888887654

>2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample}

Probab=97.33  E-value=0.0015  Score=62.61  Aligned_cols=142  Identities=7%  Similarity=0.005  Sum_probs=100.4

Q ss_pred             HHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHH
Q 021156          145 DNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLA  224 (316)
Q Consensus       145 e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~  224 (316)
                      +.++++.+.|.+.+=+-.. ....+.+.+.++.+.+.+|+ .+.+.+|+.          .+|...   +..++++.+.+
T Consensus       155 ~~a~~~~~~Gf~~vKik~g-~~~~~~~~e~v~avR~a~G~-d~~l~vDan----------~~~~~~---~a~~~~~~l~~  219 (391)
T 2qgy_A          155 RQIEKFYGKKYGGIKIYPM-LDSLSISIQFVEKVREIVGD-ELPLMLDLA----------VPEDLD---QTKSFLKEVSS  219 (391)
T ss_dssp             HHHHHHHHTTCSCEEECCC-CSSHHHHHHHHHHHHHHHCS-SSCEEEECC----------CCSCHH---HHHHHHHHHGG
T ss_pred             HHHHHHHHcCCCEEEEccC-CChHHHHHHHHHHHHHHhCC-CCEEEEEcC----------CCCCHH---HHHHHHHHHHh
Confidence            4467788899887655321 00001137889999888975 455678873          256432   46678888988


Q ss_pred             cCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHH
Q 021156          225 SYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVV  304 (316)
Q Consensus       225 ~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~  304 (316)
                      .|+..+  -     .-....|++.++++++.+++||.+.+.+.+.++++++++.+ .++.+.+--+-  .+|.....++.
T Consensus       220 ~~i~~i--E-----qP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~-~~d~v~ik~~~--~GGit~~~~i~  289 (391)
T 2qgy_A          220 FNPYWI--E-----EPVDGENISLLTEIKNTFNMKVVTGEKQSGLVHFRELISRN-AADIFNPDISG--MGGLIDIIEIS  289 (391)
T ss_dssp             GCCSEE--E-----CSSCTTCHHHHHHHHHHCSSCEEECTTCCSHHHHHHHHHTT-CCSEECCBTTT--SSCHHHHHHHH
T ss_pred             cCCCeE--e-----CCCChhhHHHHHHHHhhCCCCEEEcCCcCCHHHHHHHHHcC-CCCEEEECcch--hCCHHHHHHHH
Confidence            888854  1     11233589999999998999999999999999999999988 47888887666  66655566666


Q ss_pred             HHHHhhc
Q 021156          305 AWHAQQE  311 (316)
Q Consensus       305 ~~~~~~~  311 (316)
                      ++++++.
T Consensus       290 ~~A~~~g  296 (391)
T 2qgy_A          290 NEASNNG  296 (391)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHCC
Confidence            6666543

>3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi}

Probab=97.32  E-value=0.00083  Score=64.13  Aligned_cols=136  Identities=11%  Similarity=0.070  Sum_probs=100.4

Q ss_pred             HHHHHHHHcCCCEE--EeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH
Q 021156          145 DNSLSYIEEGATHV--IVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF  222 (316)
Q Consensus       145 e~~~~~l~~Gad~V--Vigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~  222 (316)
                      +.++++.+.|...+  =+|.....+    .+.++.+.+.+|+ .+.+.+|+.          .+|...   +..++++.+
T Consensus       151 ~~a~~~~~~G~~~iKiK~G~~~~~d----~~~v~avR~a~g~-~~~l~vDan----------~~~~~~---~a~~~~~~l  212 (378)
T 3eez_A          151 AVIDRYRQRGYVAHSVKIGGDVERD----IARIRDVEDIREP-GEIVLYDVN----------RGWTRQ---QALRVMRAT  212 (378)
T ss_dssp             HHHHHHHHTTCCEEEEECCSCHHHH----HHHHHHHTTSCCT-TCEEEEECT----------TCCCHH---HHHHHHHHT
T ss_pred             HHHHHHHhCCCCEEEeccCCCHHHH----HHHHHHHHHHcCC-CceEEEECC----------CCCCHH---HHHHHHHHh
Confidence            34667778898854  456533333    7788888888874 456788873          356532   356788888


Q ss_pred             HHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHH
Q 021156          223 LASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKD  302 (316)
Q Consensus       223 ~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~  302 (316)
                      .+.++ .+  -    + -..  |++.++++++.+++||.+.+.+.+.+|+.++++.+ .++.+.+.-+-  .+|.....+
T Consensus       213 ~~~~i-~i--E----q-P~~--~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~-~~d~v~ik~~~--~GGit~~~~  279 (378)
T 3eez_A          213 EDLHV-MF--E----Q-PGE--TLDDIAAIRPLHSAPVSVDECLVTLQDAARVARDG-LAEVFGIKLNR--VGGLTRAAR  279 (378)
T ss_dssp             GGGTC-CE--E----C-CSS--SHHHHHHTGGGCCCCEEECTTCCSHHHHHHHHHTT-CCSEEEEEHHH--HTSHHHHHH
T ss_pred             ccCCe-EE--e----c-CCC--CHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHcC-CCCEEEeCchh--cCCHHHHHH
Confidence            88876 33  1    1 111  89999999999999999999999999999999988 58989999888  888777777


Q ss_pred             HHHHHHhhc
Q 021156          303 VVAWHAQQE  311 (316)
Q Consensus       303 ~~~~~~~~~  311 (316)
                      +.++++++.
T Consensus       280 ia~~A~~~g  288 (378)
T 3eez_A          280 MRDIALTHG  288 (378)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHcC
Confidence            777777654

>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1

Probab=97.30  E-value=0.00016  Score=67.82  Aligned_cols=84  Identities=19%  Similarity=0.104  Sum_probs=62.4

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecC--------------C----ccc---HHHHHHHHH-hC--CCcEEEecCCCH-HHHH
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGA--------------D----PLS---KAAAIEALH-AY--PGGLQVGGGINS-DNSL  148 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda--------------~----~~~---~~~i~~~v~-~~--~~pl~vGGGIr~-e~~~  148 (316)
                      +..++|+.+.++|++.+++..-..              .    ...   ....++.++ .+  ++||+..|||++ +|+.
T Consensus       226 ~~~~~a~~l~~~Gvd~i~vsn~~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~i~~i~~~~~~~ipVi~~GGI~~~~da~  305 (336)
T 1f76_A          226 ELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAR  305 (336)
T ss_dssp             HHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHHHTTSSCEEEESSCCSHHHHH
T ss_pred             HHHHHHHHHHHcCCcEEEEeCCcccccccccccccccCCCcCCchhHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHH
Confidence            456789999999999888763210              0    001   112333333 45  799999999995 9999


Q ss_pred             HHHHcCCCEEEeCCeeec-CCCCCHHHHHHHHHH
Q 021156          149 SYIEEGATHVIVTSYVFN-NGQMDLERLKDLVRV  181 (316)
Q Consensus       149 ~~l~~Gad~VVigt~~~~-~~~~~~eli~ei~~~  181 (316)
                      +++.+|||.|-+|+.++. +    |+++.++.+.
T Consensus       306 ~~l~~GAd~V~igr~~l~~~----P~~~~~i~~~  335 (336)
T 1f76_A          306 EKIAAGASLVQIYSGFIFKG----PPLIKEIVTH  335 (336)
T ss_dssp             HHHHHTCSEEEESHHHHHHC----HHHHHHHHHH
T ss_pred             HHHHCCCCEEEeeHHHHhcC----cHHHHHHHhh
Confidence            999999999999999886 6    9999998753

>3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus}

Probab=97.30  E-value=8.8e-05  Score=72.05  Aligned_cols=96  Identities=14%  Similarity=0.117  Sum_probs=75.9

Q ss_pred             cCHHHHHHHHHH-cCCCcceEEEecC----C-----cc-cHHHHHHHHH-hC--CCcEEEecCCC-HHHHHHHHHcCCCE
Q 021156           93 KSAAEFANLYKE-DGLTGGHAIMLGA----D-----PL-SKAAAIEALH-AY--PGGLQVGGGIN-SDNSLSYIEEGATH  157 (316)
Q Consensus        93 ~~p~e~a~~~~~-~G~~~l~lvDLda----~-----~~-~~~~i~~~v~-~~--~~pl~vGGGIr-~e~~~~~l~~Gad~  157 (316)
                      .+..++|+.+.+ +|++.+|+..-+.    .     .. ......+.++ .+  .+|+++.|||+ .++++++++. ||.
T Consensus       264 ed~~~la~~L~~~~Gvd~I~vs~g~~~~~~~~~~~~g~~~~~~~a~~Ik~~v~~~iPVI~~GgI~t~e~Ae~~L~~-aDl  342 (419)
T 3l5a_A          264 DEFNQLIDWVMDVSNIQYLAIASWGRHIYQNTSRTPGDHFGRPVNQIVYEHLAGRIPLIASGGINSPESALDALQH-ADM  342 (419)
T ss_dssp             HHHHHHHHHHHHHSCCCCEEECCTTCCGGGCBCCCSSTTTTSBHHHHHHHHHTTSSCEEECSSCCSHHHHHHHGGG-CSE
T ss_pred             HHHHHHHHHHHhhcCCcEEEEeeCCccccccccCCCCccccHHHHHHHHHHcCCCCeEEEECCCCCHHHHHHHHHh-CCc
Confidence            467889999999 9999999887543    0     11 1112334443 34  58999999998 5999999999 999


Q ss_pred             EEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeee
Q 021156          158 VIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCR  194 (316)
Q Consensus       158 VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k  194 (316)
                      |.+|..++.|    |+++.++.+.. .+.|..++|+.
T Consensus       343 VaiGR~~Ian----Pdlv~ki~~G~-~~~I~~ci~~~  374 (419)
T 3l5a_A          343 VGMSSPFVTE----PDFVHKLAEQR-PHDINLEFSMA  374 (419)
T ss_dssp             EEESTHHHHC----TTHHHHHHTTC-GGGCCCCCCGG
T ss_pred             HHHHHHHHHC----cHHHHHHHcCC-cccceecCCHH
Confidence            9999999998    99999999877 47898999985

>4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis}

Probab=97.27  E-value=0.00094  Score=63.39  Aligned_cols=148  Identities=11%  Similarity=0.064  Sum_probs=95.1

Q ss_pred             HHHHHHHcCCCEEEeCCe--------------eecC---C------CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEE
Q 021156          146 NSLSYIEEGATHVIVTSY--------------VFNN---G------QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAI  202 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~--------------~~~~---~------~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v  202 (316)
                      .++++.++|+|-|=|-.+              .++|   |      ++..|.++.+.+.+|++.+.+-+...  +.    
T Consensus       157 AA~rA~~AGFDgVEIH~ahGYLl~QFLSp~tN~RtDeYGGS~eNR~Rf~~Eii~avr~~vg~~~v~vRls~~--~~----  230 (358)
T 4a3u_A          157 AARHALKAGFDGVQIHAANGYLIDEFIRDSTNHRHDEYGGAVENRIRLLKDVTERVIATIGKERTAVRLSPN--GE----  230 (358)
T ss_dssp             HHHHHHHTTCSEEEEEECTTSHHHHHHSTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECCS--SC----
T ss_pred             HHHHHHHcCCCeEeecccCCCcHHhceecccCCeeCCCCCCHHHHHHHHHHHHHHHHHHcCccceEEEeccC--cc----
Confidence            366677899999988322              1222   1      24568888898999888765444321  10    


Q ss_pred             EeCCcce-ecccCHHHHHHHHHHcCCCEEEEeecCCcccc-CCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCC
Q 021156          203 VTDRWQK-FSDVYLDERVLDFLASYADEFLVHGVDVEGKK-LGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGI  280 (316)
Q Consensus       203 ~~~gw~~-~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~-~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~  280 (316)
                       ..+... .........++.+.+.|++.+-++.-..++.. .+...++.+++++....|++ .||+.+++..+++++.| 
T Consensus       231 -~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~ik~~~~~~v~-~~g~~~~~~ae~~l~~G-  307 (358)
T 4a3u_A          231 -IQGTVDSHPEQVFIPAAKMLSDLDIAFLGMREGAVDGTFGKTDQPKLSPEIRKVFKPPLV-LNQDYTFETAQAALDSG-  307 (358)
T ss_dssp             -BTTBCCSSTHHHHHHHHHHHHHHTCSEEEEECCBTTCSSSBCSSCCCHHHHHHHCCSCEE-EESSCCHHHHHHHHHHT-
T ss_pred             -cCCCcccchHHHHHHHHHhhhccCccccccccccccCcccccccHHHHHHHHHhcCCcEE-EeCCCCHHHHHHHHHcC-
Confidence             111111 11112345678888899987765543334333 23334456677777776766 56788999999999998 


Q ss_pred             CcCEEEEccchhhccCcccHHHHH
Q 021156          281 GRVDVTVGSALDIFGGNLAYKDVV  304 (316)
Q Consensus       281 g~~gVivG~Al~~~~g~~~~~~~~  304 (316)
                      .+|.|.+||++  ..+|-..+.+.
T Consensus       308 ~aD~V~~gR~~--ladPdlp~k~~  329 (358)
T 4a3u_A          308 VADAISFGRPF--IGNPDLPRRFF  329 (358)
T ss_dssp             SCSEEEESHHH--HHCTTHHHHHH
T ss_pred             CceEeHhhHHH--HhChhHHHHHH
Confidence            48999999999  98886665554

>1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1

Probab=97.26  E-value=0.0029  Score=60.11  Aligned_cols=143  Identities=12%  Similarity=-0.026  Sum_probs=100.1

Q ss_pred             HHHHHHHHcCCCEEEe--CCee---ecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHH
Q 021156          145 DNSLSYIEEGATHVIV--TSYV---FNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERV  219 (316)
Q Consensus       145 e~~~~~l~~Gad~VVi--gt~~---~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a  219 (316)
                      +.++++.+.|.+.+=+  |...   .++.+.+.+.++.+.+.+|+ .+.+.+|+.          .+|..   -+..+++
T Consensus       155 ~~a~~~~~~Gf~~iKik~g~~~~~~~~~~~~~~e~v~avr~a~g~-d~~l~vDan----------~~~~~---~~a~~~~  220 (382)
T 1rvk_A          155 RFAETLVKRGYKGIKLHTWMPPVSWAPDVKMDLKACAAVREAVGP-DIRLMIDAF----------HWYSR---TDALALG  220 (382)
T ss_dssp             HHHHHHHHHTCSEEEEECCCTTSTTCCCHHHHHHHHHHHHHHHCT-TSEEEEECC----------TTCCH---HHHHHHH
T ss_pred             HHHHHHHHCCCCEEEEcCCcCccccccchHHHHHHHHHHHHHhCC-CCeEEEECC----------CCCCH---HHHHHHH
Confidence            4577778889887654  3210   00111136888888888975 455778873          35643   2466788


Q ss_pred             HHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCC-HHHHHHHHHhCCCcCEEEEccchhhccCcc
Q 021156          220 LDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTT-MADLEKIKVAGIGRVDVTVGSALDIFGGNL  298 (316)
Q Consensus       220 ~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s-~eDi~~l~~~G~g~~gVivG~Al~~~~g~~  298 (316)
                      +.+.+.|+..+  -     .-....|++.++++++.+++||.+.+.+.+ .++++++++.+ .++.+.+--+-  .+|-.
T Consensus       221 ~~l~~~~i~~i--E-----~P~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~~i~~~-~~d~v~ik~~~--~GGit  290 (382)
T 1rvk_A          221 RGLEKLGFDWI--E-----EPMDEQSLSSYKWLSDNLDIPVVGPESAAGKHWHRAEWIKAG-ACDILRTGVND--VGGIT  290 (382)
T ss_dssp             HHHHTTTCSEE--E-----CCSCTTCHHHHHHHHHHCSSCEEECSSCSSHHHHHHHHHHTT-CCSEEEECHHH--HTSHH
T ss_pred             HHHHhcCCCEE--e-----CCCChhhHHHHHHHHhhCCCCEEEeCCccCcHHHHHHHHHcC-CCCEEeeCchh--cCCHH
Confidence            88998888854  1     112234899999999889999999999999 99999999998 48888887766  66655


Q ss_pred             cHHHHHHHHHhhc
Q 021156          299 AYKDVVAWHAQQE  311 (316)
Q Consensus       299 ~~~~~~~~~~~~~  311 (316)
                      ...++.++++++.
T Consensus       291 ~~~~i~~~A~~~g  303 (382)
T 1rvk_A          291 PALKTMHLAEAFG  303 (382)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcC
Confidence            5666666666543

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=97.22  E-value=0.00048  Score=67.95  Aligned_cols=168  Identities=18%  Similarity=0.206  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHcCCCcceEEEecCC---cccHHHHHHHHHh------CCCcEEEecCCCH---HHHHHHHHcCCCEEEeCC
Q 021156           95 AAEFANLYKEDGLTGGHAIMLGAD---PLSKAAAIEALHA------YPGGLQVGGGINS---DNSLSYIEEGATHVIVTS  162 (316)
Q Consensus        95 p~e~a~~~~~~G~~~l~lvDLda~---~~~~~~i~~~v~~------~~~pl~vGGGIr~---e~~~~~l~~Gad~VVigt  162 (316)
                      ..++.+.+.+.+...+-++|=++.   -.....+.+....      ....+.+++-+..   +.+..+.+.|++.+++.+
T Consensus       169 l~eal~~m~~~~~~~lpVVde~g~lvGiiT~~Dil~~~~~~~~~~~~~g~~~v~~~~~~~~~~~a~~l~~~gvd~lvvdt  248 (486)
T 2cu0_A          169 VEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVARKKYKNAVRDENGELLVAAAVSPFDIKRAIELDKAGVDVIVVDT  248 (486)
T ss_dssp             --------------------------------------CCTTCCBCTTSCBCCEEEECTTCHHHHHHHHHTTCSEEEEEC
T ss_pred             HHHHHHHHHHcCCCEEEEEecCCeEEEEEEHHHHHHhhhccccccccCCceeecceechhhHHHHHHHHHhcCCceEEEe
Confidence            345666677777778888874432   1122233333321      0123445544442   668888899999998877


Q ss_pred             eeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCC-----
Q 021156          163 YVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDV-----  237 (316)
Q Consensus       163 ~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~-----  237 (316)
                      +.-.... -.+.++.+.+.++ -.++    .+      .+.           ..+.++.+.  |++.+.+ .+-.     
T Consensus       249 a~G~~~~-~L~~I~~l~~~~~-vpvi----~k------~v~-----------~~~~a~~l~--G~d~v~v-g~g~g~~~~  302 (486)
T 2cu0_A          249 AHAHNLK-AIKSMKEMRQKVD-ADFI----VG------NIA-----------NPKAVDDLT--FADAVKV-GIGPGSICT  302 (486)
T ss_dssp             SCCCCHH-HHHHHHHHHHTCC-SEEE----EE------EEC-----------CHHHHTTCT--TSSEEEE-CSSCSTTBC
T ss_pred             cCCcEee-hhhHHHHHHHHhC-Cccc----cC------CcC-----------CHHHHHHhh--CCCeEEE-eeeecccee
Confidence            3211100 1344555555442 1121    11      111           123444444  8888876 2110     


Q ss_pred             ----ccccCCCCHH---HHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          238 ----EGKKLGIDDE---LVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       238 ----dG~~~G~d~e---li~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                          .|. ..+...   .+.++.+..++|||++|||++..|+.+++.+|  +++|++|+++
T Consensus       303 ~r~~~~~-g~~~~~~l~~~~~~~~~~~vpVia~GGi~~~~di~kalalG--A~~v~~g~~~  360 (486)
T 2cu0_A          303 TRIVAGV-GVPQITAVAMVADRAQEYGLYVIADGGIRYSGDIVKAIAAG--ADAVMLGNLL  360 (486)
T ss_dssp             HHHHTCC-CCCHHHHHHHHHHHHHHHTCEEEEESCCCSHHHHHHHHHTT--CSEEEESTTT
T ss_pred             eeEEeec-CcchHHHHHHHHHHHHHcCCcEEecCCCCCHHHHHHHHHcC--CCceeeChhh
Confidence                011 112223   34445555589999999999999999999998  9999999998

>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}

Probab=97.22  E-value=0.0011  Score=60.16  Aligned_cols=71  Identities=17%  Similarity=0.191  Sum_probs=54.6

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecC---C--cccHHHHHHHHH--hCC-CcEEEecCCC-HHHHHHHHHcCCCEEEeCCe
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGA---D--PLSKAAAIEALH--AYP-GGLQVGGGIN-SDNSLSYIEEGATHVIVTSY  163 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda---~--~~~~~~i~~~v~--~~~-~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~  163 (316)
                      .|| ++|+.+++.|+.-+  ..|.+   +  ...++..++.+.  ..+ +|++++|||. .+|+..+++.|||-|++||+
T Consensus       133 ~D~-~~ak~l~~~G~~aV--mPlg~pIGsG~Gi~~~~~L~~i~~~~~~~vPVI~~GGI~tpsDAa~AmeLGAdgVlVgSA  209 (268)
T 2htm_A          133 PDL-VLAKRLAALGTATV--MPLAAPIGSGWGVRTRALLELFAREKASLPPVVVDAGLGLPSHAAEVMELGLDAVLVNTA  209 (268)
T ss_dssp             SCH-HHHHHHHHHTCSCB--EEBSSSTTTCCCSTTHHHHHHHHHTTTTSSCBEEESCCCSHHHHHHHHHTTCCEEEESHH
T ss_pred             CCH-HHHHHHHhcCCCEE--EecCccCcCCcccCCHHHHHHHHHhcCCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChH
Confidence            578 48999999888755  77663   1  122344555554  457 9999999998 59999999999999999998


Q ss_pred             eec
Q 021156          164 VFN  166 (316)
Q Consensus       164 ~~~  166 (316)
                      ..+
T Consensus       210 I~~  212 (268)
T 2htm_A          210 IAE  212 (268)
T ss_dssp             HHT
T ss_pred             HhC
Confidence            875

>2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A*

Probab=97.21  E-value=0.0019  Score=61.09  Aligned_cols=139  Identities=13%  Similarity=0.188  Sum_probs=100.6

Q ss_pred             HHHHHHHHcCCCEEEe--CCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHH-HHHHH
Q 021156          145 DNSLSYIEEGATHVIV--TSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLD-ERVLD  221 (316)
Q Consensus       145 e~~~~~l~~Gad~VVi--gt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~-e~a~~  221 (316)
                      +.++++.+.|.+.+=+  |.....    +.+.++.+.+.+|++ +-+.+|+.          .+|...   +.. ++++.
T Consensus       147 ~~a~~~~~~Gf~~iKik~g~~~~~----~~e~v~avr~a~g~~-~~l~vDan----------~~~~~~---~a~~~~~~~  208 (369)
T 2p8b_A          147 EEAASMIQKGYQSFKMKVGTNVKE----DVKRIEAVRERVGND-IAIRVDVN----------QGWKNS---ANTLTALRS  208 (369)
T ss_dssp             HHHHHHHHTTCCEEEEECCSCHHH----HHHHHHHHHHHHCTT-SEEEEECT----------TTTBSH---HHHHHHHHT
T ss_pred             HHHHHHHHcCcCEEEEEeCCCHHH----HHHHHHHHHHHhCCC-CeEEEECC----------CCCCHH---HHHHHHHHH
Confidence            4577888899887654  432223    378899998889754 45678873          356432   355 77777


Q ss_pred             HHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHH
Q 021156          222 FLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYK  301 (316)
Q Consensus       222 ~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~  301 (316)
                      +.+.|+..+  -     .-....|++.++++++.+++||.+.+.+.+.+++.++++.+ .++.+.+--+-  .+|.....
T Consensus       209 l~~~~i~~i--E-----qP~~~~d~~~~~~l~~~~~iPI~~dE~~~~~~~~~~~i~~~-~~d~v~ik~~~--~GGit~~~  278 (369)
T 2p8b_A          209 LGHLNIDWI--E-----QPVIADDIDAMAHIRSKTDLPLMIDEGLKSSREMRQIIKLE-AADKVNIKLMK--CGGIYPAV  278 (369)
T ss_dssp             STTSCCSCE--E-----CCBCTTCHHHHHHHHHTCCSCEEESTTCCSHHHHHHHHHHT-CCSEEEECHHH--HTSHHHHH
T ss_pred             HHhCCCcEE--E-----CCCCcccHHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHhC-CCCEEEeecch--hCCHHHHH
Confidence            877777743  1     11233489999999998999999999999999999999988 48889988777  77765666


Q ss_pred             HHHHHHHhhc
Q 021156          302 DVVAWHAQQE  311 (316)
Q Consensus       302 ~~~~~~~~~~  311 (316)
                      ++.++++++.
T Consensus       279 ~i~~~A~~~g  288 (369)
T 2p8b_A          279 KLAHQAEMAG  288 (369)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHcC
Confidence            6666666643

>3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O

Probab=97.19  E-value=0.0025  Score=58.94  Aligned_cols=67  Identities=15%  Similarity=0.038  Sum_probs=48.7

Q ss_pred             HHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCC-HH----HHHHHHHhCCCcCEEEEccch
Q 021156          217 ERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTT-MA----DLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       217 e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s-~e----Di~~l~~~G~g~~gVivG~Al  291 (316)
                      ..++...++|++.+- |..+      +   +.++++.+.+++||+++||+.. .+    .+..+++.|  ++|+++||++
T Consensus       193 ~aariA~elGAD~VK-t~~t------~---e~~~~vv~~~~vPVv~~GG~~~~~~~~l~~v~~ai~aG--A~Gv~vGRnI  260 (295)
T 3glc_A          193 LATRIAAEMGAQIIK-TYYV------E---KGFERIVAGCPVPIVIAGGKKLPEREALEMCWQAIDQG--ASGVDMGRNI  260 (295)
T ss_dssp             HHHHHHHHTTCSEEE-EECC------T---TTHHHHHHTCSSCEEEECCSCCCHHHHHHHHHHHHHTT--CSEEEESHHH
T ss_pred             HHHHHHHHhCCCEEE-eCCC------H---HHHHHHHHhCCCcEEEEECCCCCHHHHHHHHHHHHHhC--CeEEEeHHHH
Confidence            367888899999654 4322      1   2357777778899999999984 43    455556777  9999999999


Q ss_pred             hhccCc
Q 021156          292 DIFGGN  297 (316)
Q Consensus       292 ~~~~g~  297 (316)
                        |..+
T Consensus       261 --~q~~  264 (295)
T 3glc_A          261 --FQSD  264 (295)
T ss_dssp             --HTSS
T ss_pred             --hcCc
Confidence              5443

>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*

Probab=97.15  E-value=0.0002  Score=69.40  Aligned_cols=86  Identities=22%  Similarity=0.203  Sum_probs=63.8

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecC------------C----cccHH---HHHHHH-HhC--CCcEEEecCCCH-HHHHHH
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGA------------D----PLSKA---AAIEAL-HAY--PGGLQVGGGINS-DNSLSY  150 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda------------~----~~~~~---~i~~~v-~~~--~~pl~vGGGIr~-e~~~~~  150 (316)
                      +..++|+...++|++++.+..=..            +    ....+   .++..+ +.+  .+||+..|||++ +|+.++
T Consensus       284 ~i~~iA~~a~~aGaDgIiv~Ntt~~r~dl~~~~~~~GGlSG~a~~p~al~~I~~v~~~v~~~iPIIg~GGI~s~eDa~e~  363 (415)
T 3i65_A          284 QKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEK  363 (415)
T ss_dssp             HHHHHHHHHHHHTCSEEEECCCBSCCCCCGGGTTCCSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEECSSCCSHHHHHHH
T ss_pred             HHHHHHHHHHHcCCcEEEEeCCCcccccccccccccCCcCCccchHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHH
Confidence            578899999999999998875211            1    11122   333334 356  699999999985 999999


Q ss_pred             HHcCCCEEEeCCeeecCCCCCHHHHHHHHHHh
Q 021156          151 IEEGATHVIVTSYVFNNGQMDLERLKDLVRVV  182 (316)
Q Consensus       151 l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~  182 (316)
                      +.+||+.|.+||.++.+|   |.+++++.+..
T Consensus       364 l~aGAd~VqIgra~l~~G---P~~~~~i~~~L  392 (415)
T 3i65_A          364 IEAGASVCQLYSCLVFNG---MKSAVQIKREL  392 (415)
T ss_dssp             HHHTEEEEEESHHHHHHG---GGHHHHHHHHH
T ss_pred             HHcCCCEEEEcHHHHhcC---HHHHHHHHHHH
Confidence            999999999999997652   77777776654

>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...

Probab=97.14  E-value=0.00062  Score=64.96  Aligned_cols=85  Identities=18%  Similarity=0.169  Sum_probs=64.2

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecC--------------C----cccH---HHHHHHH-HhC--CCcEEEecCCCH-HHHH
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGA--------------D----PLSK---AAAIEAL-HAY--PGGLQVGGGINS-DNSL  148 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda--------------~----~~~~---~~i~~~v-~~~--~~pl~vGGGIr~-e~~~  148 (316)
                      +..++|+...++|++++.+..-..              +    ....   ..++..+ +.+  .+||+..|||++ +|+.
T Consensus       235 ~~~~ia~~~~~aGadgi~v~ntt~~r~~~~~~~~~~~~gGlSG~~i~p~a~~~v~~i~~~v~~~ipvI~~GGI~s~~da~  314 (367)
T 3zwt_A          235 DKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDAL  314 (367)
T ss_dssp             HHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHH
T ss_pred             HHHHHHHHHHHcCCCEEEEeCCCcccccccccccccccCCcCCcccchhHHHHHHHHHHHcCCCceEEEECCCCCHHHHH
Confidence            577899999999999998874320              0    0111   1233334 456  799999999984 9999


Q ss_pred             HHHHcCCCEEEeCCeee-cCCCCCHHHHHHHHHHh
Q 021156          149 SYIEEGATHVIVTSYVF-NNGQMDLERLKDLVRVV  182 (316)
Q Consensus       149 ~~l~~Gad~VVigt~~~-~~~~~~~eli~ei~~~~  182 (316)
                      +++.+|||.|.+|+.++ ++    |.++.++.+..
T Consensus       315 ~~l~~GAd~V~vgra~l~~g----P~~~~~i~~~l  345 (367)
T 3zwt_A          315 EKIRAGASLVQLYTALTFWG----PPVVGKVKREL  345 (367)
T ss_dssp             HHHHHTCSEEEESHHHHHHC----THHHHHHHHHH
T ss_pred             HHHHcCCCEEEECHHHHhcC----cHHHHHHHHHH
Confidence            99999999999999994 55    88888887655

>1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A {Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1

Probab=97.11  E-value=0.0049  Score=58.26  Aligned_cols=140  Identities=13%  Similarity=0.140  Sum_probs=100.2

Q ss_pred             HHHHHHHH-cCCCEEEe--CCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHH
Q 021156          145 DNSLSYIE-EGATHVIV--TSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLD  221 (316)
Q Consensus       145 e~~~~~l~-~Gad~VVi--gt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~  221 (316)
                      +.++++.+ .|.+.+=+  |....+   .+.+.++.+.+.+|+ .+-+.+|+.          .+|...   +..++++.
T Consensus       148 ~~a~~~~~~~Gf~~iKik~g~~~~~---~~~e~v~avr~a~g~-~~~l~vDan----------~~~~~~---~a~~~~~~  210 (370)
T 1nu5_A          148 DSALEMIETRRHNRFKVKLGARTPA---QDLEHIRSIVKAVGD-RASVRVDVN----------QGWDEQ---TASIWIPR  210 (370)
T ss_dssp             HHHHHHHHTTSCSEEEEECSSSCHH---HHHHHHHHHHHHHGG-GCEEEEECT----------TCCCHH---HHHHHHHH
T ss_pred             HHHHHHHHhCCccEEEEecCCCChH---HHHHHHHHHHHhcCC-CCEEEEECC----------CCCCHH---HHHHHHHH
Confidence            55778888 99886544  431111   137888888888974 456788873          256432   35678888


Q ss_pred             HHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHH
Q 021156          222 FLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYK  301 (316)
Q Consensus       222 ~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~  301 (316)
                      +.+.|+..+  -     .-....|++.++++++.+++||.+.+.+.+.+++.++++.+ .++.+.+--+-  .+|.....
T Consensus       211 l~~~~i~~i--E-----qP~~~~~~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~-~~d~v~ik~~~--~GGit~~~  280 (370)
T 1nu5_A          211 LEEAGVELV--E-----QPVPRANFGALRRLTEQNGVAILADESLSSLSSAFELARDH-AVDAFSLKLCN--MGGIANTL  280 (370)
T ss_dssp             HHHHTCCEE--E-----CCSCTTCHHHHHHHHHHCSSEEEESTTCCSHHHHHHHHHTT-CCSEEEECHHH--HTSHHHHH
T ss_pred             HHhcCcceE--e-----CCCCcccHHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHhC-CCCEEEEchhh--cCCHHHHH
Confidence            999888753  1     11233589999999988899999999999999999999998 48888887666  66655556


Q ss_pred             HHHHHHHhhc
Q 021156          302 DVVAWHAQQE  311 (316)
Q Consensus       302 ~~~~~~~~~~  311 (316)
                      ++.++++++.
T Consensus       281 ~i~~~A~~~g  290 (370)
T 1nu5_A          281 KVAAVAEAAG  290 (370)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHcC
Confidence            6666665543

>3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A*

Probab=97.11  E-value=0.0026  Score=60.01  Aligned_cols=139  Identities=11%  Similarity=0.075  Sum_probs=98.3

Q ss_pred             HHHHHHHHcCCCE--EEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH
Q 021156          145 DNSLSYIEEGATH--VIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF  222 (316)
Q Consensus       145 e~~~~~l~~Gad~--VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~  222 (316)
                      ++++++.+.|...  +=+|.....+    .+.++.+.+.+|+ .+.+.+|+.          .+|...   +..++++.+
T Consensus       145 ~~a~~~~~~G~~~~K~K~g~~~~~d----~~~v~avR~a~g~-~~~l~vDan----------~~~~~~---~a~~~~~~L  206 (354)
T 3jva_A          145 QKAVEKVKLGFDTLKIKVGTGIEAD----IARVKAIREAVGF-DIKLRLDAN----------QAWTPK---DAVKAIQAL  206 (354)
T ss_dssp             HHHHHHHHTTCSEEEEECCSCHHHH----HHHHHHHHHHHCT-TSEEEEECT----------TCSCHH---HHHHHHHHT
T ss_pred             HHHHHHHHhCCCeEEEEeCCCHHHH----HHHHHHHHHHcCC-CCeEEEECC----------CCCCHH---HHHHHHHHH
Confidence            4567778889875  4456544444    8899999999975 456788873          356431   355677777


Q ss_pred             HHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHH
Q 021156          223 LASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKD  302 (316)
Q Consensus       223 ~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~  302 (316)
                      .+.++..+  -    + -....|++.++++++.+++||.+.+.+.+.+|+.++++.+ .++.+.+--+-  .+|-....+
T Consensus       207 ~~~~i~~i--E----q-P~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~-~~d~v~~k~~~--~GGit~~~~  276 (354)
T 3jva_A          207 ADYQIELV--E----Q-PVKRRDLEGLKYVTSQVNTTIMADESCFDAQDALELVKKG-TVDVINIKLMK--CGGIHEALK  276 (354)
T ss_dssp             TTSCEEEE--E----C-CSCTTCHHHHHHHHHHCSSEEEESTTCCSHHHHHHHHHHT-CCSEEEECHHH--HTSHHHHHH
T ss_pred             HhcCCCEE--E----C-CCChhhHHHHHHHHHhCCCCEEEcCCcCCHHHHHHHHHcC-CCCEEEECchh--cCCHHHHHH
Confidence            77665433  1    1 1222389999999998999999999999999999999987 47888888777  666555566


Q ss_pred             HHHHHHhhc
Q 021156          303 VVAWHAQQE  311 (316)
Q Consensus       303 ~~~~~~~~~  311 (316)
                      +.++++++.
T Consensus       277 i~~~A~~~g  285 (354)
T 3jva_A          277 INQICETAG  285 (354)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHcC
Confidence            666666543

>3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum}

Probab=97.10  E-value=0.0044  Score=59.17  Aligned_cols=139  Identities=19%  Similarity=0.179  Sum_probs=99.8

Q ss_pred             HHHHHHHHc-CCCEE--EeCC-eeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHH
Q 021156          145 DNSLSYIEE-GATHV--IVTS-YVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVL  220 (316)
Q Consensus       145 e~~~~~l~~-Gad~V--Vigt-~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~  220 (316)
                      ++++++++. |...+  =+|. ....+    .+.++.+.+.+|+ .+.+.+|+.          .+|...   +..++++
T Consensus       154 ~~a~~~~~~~G~~~~K~Kvg~~~~~~d----~~~v~avR~a~g~-~~~l~vDan----------~~~~~~---~A~~~~~  215 (383)
T 3i4k_A          154 AEIEERIEEFGNRSFKLKMGAGDPAED----TRRVAELAREVGD-RVSLRIDIN----------ARWDRR---TALHYLP  215 (383)
T ss_dssp             HHHHHHHHHHCCSEEEEECCSSCHHHH----HHHHHHHHHTTTT-TSEEEEECT----------TCSCHH---HHHHHHH
T ss_pred             HHHHHHHHhcCCcEEEEeeCCCCHHHH----HHHHHHHHHHcCC-CCEEEEECC----------CCCCHH---HHHHHHH
Confidence            446677776 97754  4565 22333    7889999999974 456788873          356532   4667889


Q ss_pred             HHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccH
Q 021156          221 DFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAY  300 (316)
Q Consensus       221 ~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~  300 (316)
                      .+.+.|+..|  -     .-....|++.++++++.+++||.+.+.+.+.+|+.++++.+ .++.+.+--+-  .+|-...
T Consensus       216 ~l~~~~i~~i--E-----qP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~-~~d~v~~k~~~--~GGit~~  285 (383)
T 3i4k_A          216 ILAEAGVELF--E-----QPTPADDLETLREITRRTNVSVMADESVWTPAEALAVVKAQ-AADVIALKTTK--HGGLLES  285 (383)
T ss_dssp             HHHHTTCCEE--E-----SCSCTTCHHHHHHHHHHHCCEEEESTTCSSHHHHHHHHHHT-CCSEEEECTTT--TTSHHHH
T ss_pred             HHHhcCCCEE--E-----CCCChhhHHHHHHHHhhCCCCEEecCccCCHHHHHHHHHcC-CCCEEEEcccc--cCCHHHH
Confidence            9999998754  1     11233489999999988899999999999999999999988 47888887766  6665555


Q ss_pred             HHHHHHHHhhc
Q 021156          301 KDVVAWHAQQE  311 (316)
Q Consensus       301 ~~~~~~~~~~~  311 (316)
                      .++.++++++.
T Consensus       286 ~~ia~~A~~~g  296 (383)
T 3i4k_A          286 KKIAAIAEAGG  296 (383)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHcC
Confidence            56666665543

>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}

Probab=97.09  E-value=0.00068  Score=61.91  Aligned_cols=73  Identities=18%  Similarity=0.117  Sum_probs=52.2

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCC---c----ccHHHHHHHHHh-CCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCee
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGAD---P----LSKAAAIEALHA-YPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYV  164 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~---~----~~~~~i~~~v~~-~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~  164 (316)
                      .|.+.++...+.+-..+|++.+.+.   .    ......++.+++ .+.|+.+||||+ .+++++.+.+|||-||+||++
T Consensus       159 t~~eri~~i~~~~~gfvY~vS~~GvTG~~~~~~~~~~~~v~~vr~~~~~pv~vGfGI~~~e~~~~~~~~gADgvVVGSai  238 (267)
T 3vnd_A          159 ADADTLKMVSEQGEGYTYLLSRAGVTGTESKAGEPIENILTQLAEFNAPPPLLGFGIAEPEQVRAAIKAGAAGAISGSAV  238 (267)
T ss_dssp             CCHHHHHHHHHHCCSCEEESCCCCCC--------CHHHHHHHHHTTTCCCEEECSSCCSHHHHHHHHHTTCSEEEECHHH
T ss_pred             CCHHHHHHHHHhCCCcEEEEecCCCCCCccCCcHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCCEEEECHHH
Confidence            4556667776665455666666542   1    123344555554 679999999998 599999999999999999988


Q ss_pred             ec
Q 021156          165 FN  166 (316)
Q Consensus       165 ~~  166 (316)
                      .+
T Consensus       239 v~  240 (267)
T 3vnd_A          239 VK  240 (267)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2 d.54.1.1 PDB: 1jpm_A

Probab=97.06  E-value=0.0047  Score=58.34  Aligned_cols=139  Identities=12%  Similarity=0.110  Sum_probs=98.4

Q ss_pred             HHHHHHHHcCCCEEEe--CC-eeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHH
Q 021156          145 DNSLSYIEEGATHVIV--TS-YVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLD  221 (316)
Q Consensus       145 e~~~~~l~~Gad~VVi--gt-~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~  221 (316)
                      +.++++.+.|.+.+=+  |. ....    +.+.++.+.+.+|+ .+-+.+|+.          .+|...   +..++++.
T Consensus       146 ~~a~~~~~~Gf~~iKik~g~~~~~~----d~~~v~avr~a~g~-~~~l~vDan----------~~~~~~---~a~~~~~~  207 (366)
T 1tkk_A          146 ADAENYLKQGFQTLKIKVGKDDIAT----DIARIQEIRKRVGS-AVKLRLDAN----------QGWRPK---EAVTAIRK  207 (366)
T ss_dssp             HHHHHHHHHTCCEEEEECCSSCHHH----HHHHHHHHHHHHCS-SSEEEEECT----------TCSCHH---HHHHHHHH
T ss_pred             HHHHHHHHcCCCeEEEEeCCCCHHH----HHHHHHHHHHHhCC-CCeEEEECC----------CCCCHH---HHHHHHHH
Confidence            4577788889886544  43 1222    37889999888975 455788873          356432   35678888


Q ss_pred             HHH--cCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCccc
Q 021156          222 FLA--SYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLA  299 (316)
Q Consensus       222 ~~~--~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~  299 (316)
                      +.+  .++..+  -    + -....|++.++++++.+++||.+.+.+.+.+++.++++.+ .++.+.+--+-  .+|...
T Consensus       208 l~~~~~~i~~i--E----q-P~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~-~~d~v~ik~~~--~GGit~  277 (366)
T 1tkk_A          208 MEDAGLGIELV--E----Q-PVHKDDLAGLKKVTDATDTPIMADESVFTPRQAFEVLQTR-SADLINIKLMK--AGGISG  277 (366)
T ss_dssp             HHHTTCCEEEE--E----C-CSCTTCHHHHHHHHHHCSSCEEECTTCCSHHHHHHHHHHT-CCSEEEECHHH--HTSHHH
T ss_pred             HhhcCCCceEE--E----C-CCCcccHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHhC-CCCEEEeehhh--hcCHHH
Confidence            888  655432  1    1 1233489999999988899999999999999999999987 48888887766  666555


Q ss_pred             HHHHHHHHHhhc
Q 021156          300 YKDVVAWHAQQE  311 (316)
Q Consensus       300 ~~~~~~~~~~~~  311 (316)
                      ..++.++++++.
T Consensus       278 ~~~i~~~A~~~g  289 (366)
T 1tkk_A          278 AEKINAMAEACG  289 (366)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcC
Confidence            566666666543

>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*

Probab=97.06  E-value=0.00038  Score=64.45  Aligned_cols=85  Identities=14%  Similarity=0.092  Sum_probs=61.5

Q ss_pred             CHHHHHHHHHHcC-CCcceEEE-------ec--CC---------------ccc---HHHHHHHH-HhC-CCcEEEecCCC
Q 021156           94 SAAEFANLYKEDG-LTGGHAIM-------LG--AD---------------PLS---KAAAIEAL-HAY-PGGLQVGGGIN  143 (316)
Q Consensus        94 ~p~e~a~~~~~~G-~~~l~lvD-------Ld--a~---------------~~~---~~~i~~~v-~~~-~~pl~vGGGIr  143 (316)
                      +..++|+.+.++| ++.+.+.+       +|  ..               ...   ....++.+ +.+ ++|++..|||+
T Consensus       175 ~~~~~a~~~~~aG~~d~i~v~~~~~~~~~i~~~~~~~~~~~~~~~gG~sg~~~~p~~~~~i~~v~~~~~~ipvi~~GGI~  254 (314)
T 2e6f_A          175 HFDTAAAVLNEFPLVKFVTCVNSVGNGLVIDAESESVVIKPKQGFGGLGGKYILPTALANVNAFYRRCPDKLVFGCGGVY  254 (314)
T ss_dssp             HHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEESGGGHHHHHHHHHHHHHHCTTSEEEEESSCC
T ss_pred             HHHHHHHHHHhcCCceEEEEeCCCCccccccCCCCCcccccCcCCCccCcccccHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence            3445688888899 99887643       22  11               001   12333334 457 89999999998


Q ss_pred             -HHHHHHHHHcCCCEEEeCCeeec-CCCCCHHHHHHHHHHh
Q 021156          144 -SDNSLSYIEEGATHVIVTSYVFN-NGQMDLERLKDLVRVV  182 (316)
Q Consensus       144 -~e~~~~~l~~Gad~VVigt~~~~-~~~~~~eli~ei~~~~  182 (316)
                       .+|+.+++.+|||.|.+|+.++. +    |++++++.+..
T Consensus       255 ~~~da~~~l~~GAd~V~ig~~~l~~~----p~~~~~i~~~l  291 (314)
T 2e6f_A          255 SGEDAFLHILAGASMVQVGTALQEEG----PGIFTRLEDEL  291 (314)
T ss_dssp             SHHHHHHHHHHTCSSEEECHHHHHHC----TTHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCEEEEchhhHhcC----cHHHHHHHHHH
Confidence             59999999999999999999995 7    88888877654

>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0

Probab=97.05  E-value=0.0042  Score=56.81  Aligned_cols=91  Identities=9%  Similarity=-0.064  Sum_probs=72.5

Q ss_pred             cccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccc
Q 021156          211 SDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSA  290 (316)
Q Consensus       211 ~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~A  290 (316)
                      .+.++.++|+.+++.|+..+  +-++.++.+.| +.+.++.+++.+++||+.-+.+.+..++.++...|  +++|+++.+
T Consensus        77 ~~~dp~~~A~~y~~~GA~~I--sVltd~~~f~G-s~~~L~~ir~~v~lPVl~Kdfi~d~~qi~ea~~~G--AD~VlLi~a  151 (272)
T 3tsm_A           77 PDFDPPALAKAYEEGGAACL--SVLTDTPSFQG-APEFLTAARQACSLPALRKDFLFDPYQVYEARSWG--ADCILIIMA  151 (272)
T ss_dssp             SSCCHHHHHHHHHHTTCSEE--EEECCSTTTCC-CHHHHHHHHHTSSSCEEEESCCCSTHHHHHHHHTT--CSEEEEETT
T ss_pred             CCCCHHHHHHHHHHCCCCEE--EEeccccccCC-CHHHHHHHHHhcCCCEEECCccCCHHHHHHHHHcC--CCEEEEccc
Confidence            35689999999999999987  33344445555 78888899988999999999999999999999998  999999988


Q ss_pred             hhhccCcccHHHHHHHHHh
Q 021156          291 LDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       291 l~~~~g~~~~~~~~~~~~~  309 (316)
                      .  +. .-.++++.+.++.
T Consensus       152 ~--L~-~~~l~~l~~~a~~  167 (272)
T 3tsm_A          152 S--VD-DDLAKELEDTAFA  167 (272)
T ss_dssp             T--SC-HHHHHHHHHHHHH
T ss_pred             c--cC-HHHHHHHHHHHHH
Confidence            8  64 2345566555554

>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}

Probab=97.00  E-value=0.0013  Score=62.29  Aligned_cols=86  Identities=13%  Similarity=0.101  Sum_probs=63.8

Q ss_pred             cCHHHHHHHHHHcCCCcceEE----------EecCC---------------cccH---HHHHHHHH-hC--CCcEEEecC
Q 021156           93 KSAAEFANLYKEDGLTGGHAI----------MLGAD---------------PLSK---AAAIEALH-AY--PGGLQVGGG  141 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lv----------DLda~---------------~~~~---~~i~~~v~-~~--~~pl~vGGG  141 (316)
                      .++.++++....+|++++-++          |++..               ....   ..++..++ .+  .+||+..||
T Consensus       204 ~~~~~~a~~~~~aga~~i~~int~nt~g~~~~i~~~~~~~~~~~~~gGlSG~ai~p~a~~~v~~i~~~~~~~ipIIg~GG  283 (345)
T 3oix_A          204 FDIVHFDQAAAIFNXYPLTFVNCINSIGNGLVIEDETVVIXPKNGFGGIGGDYVKPTALANVHAFYKRLNPSIQIIGTGG  283 (345)
T ss_dssp             CCHHHHHHHHHHHTTSCCSEEEECCCEEEEECEETTEESCSGGGGEEEEEEGGGHHHHHHHHHHHHTTSCTTSEEEEESS
T ss_pred             CCHHHHHHHHHHhCCCceEEEEeecccccceeeccCccccccccccCCcCCccccHHHHHHHHHHHHHcCCCCcEEEECC
Confidence            478899999999998887654          23321               1112   22334444 46  699999999


Q ss_pred             CCH-HHHHHHHHcCCCEEEeCCe-eecCCCCCHHHHHHHHHHh
Q 021156          142 INS-DNSLSYIEEGATHVIVTSY-VFNNGQMDLERLKDLVRVV  182 (316)
Q Consensus       142 Ir~-e~~~~~l~~Gad~VVigt~-~~~~~~~~~eli~ei~~~~  182 (316)
                      |++ +|+.+++.+|||.|.+|+. .+.+    |.+++++.+..
T Consensus       284 I~s~~da~~~l~aGAd~V~igra~~~~g----P~~~~~i~~~L  322 (345)
T 3oix_A          284 VXTGRDAFEHILCGASMVQIGTALHQEG----PQIFKRITKEL  322 (345)
T ss_dssp             CCSHHHHHHHHHHTCSEEEESHHHHHHC----THHHHHHHHHH
T ss_pred             CCChHHHHHHHHhCCCEEEEChHHHhcC----hHHHHHHHHHH
Confidence            985 9999999999999999999 6776    88888887654

>2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A

Probab=97.00  E-value=0.0045  Score=59.06  Aligned_cols=140  Identities=11%  Similarity=-0.008  Sum_probs=96.6

Q ss_pred             HHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHH
Q 021156          145 DNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLA  224 (316)
Q Consensus       145 e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~  224 (316)
                      +.++++.+.|.+.+=+-... .+.+. .+.++.+.+.+|+ .+.+.+|+.          .+|...   +..++++.+.+
T Consensus       170 ~~a~~~~~~Gf~~vKik~g~-~~~~~-~e~v~avr~a~g~-d~~l~vDan----------~~~~~~---~a~~~~~~l~~  233 (388)
T 2nql_A          170 ELAKYWQDRGFNAFKFATPV-ADDGP-AAEIANLRQVLGP-QAKIAADMH----------WNQTPE---RALELIAEMQP  233 (388)
T ss_dssp             HHHHHHHHTTCCEEEEEGGG-CTTCH-HHHHHHHHHHHCT-TSEEEEECC----------SCSCHH---HHHHHHHHHGG
T ss_pred             HHHHHHHHhCCCEEEEeCCC-CChHH-HHHHHHHHHHhCC-CCEEEEECC----------CCCCHH---HHHHHHHHHhh
Confidence            45677888998876542111 23334 6888888888975 455778873          356432   46678888888


Q ss_pred             cCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHH
Q 021156          225 SYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVV  304 (316)
Q Consensus       225 ~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~  304 (316)
                      .|+..+       +.-....|++.++++++.+++||++.+.+.+.++++++++.+ .++.+.+- ..  .+|.....++.
T Consensus       234 ~~i~~i-------EqP~~~~d~~~~~~l~~~~~iPI~~dE~~~~~~~~~~~i~~~-~~d~v~ik-~~--~GGit~~~~i~  302 (388)
T 2nql_A          234 FDPWFA-------EAPVWTEDIAGLEKVSKNTDVPIAVGEEWRTHWDMRARIERC-RIAIVQPE-MG--HKGITNFIRIG  302 (388)
T ss_dssp             GCCSCE-------ECCSCTTCHHHHHHHHTSCCSCEEECTTCCSHHHHHHHHTTS-CCSEECCC-HH--HHCHHHHHHHH
T ss_pred             cCCCEE-------ECCCChhhHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHcC-CCCEEEec-CC--CCCHHHHHHHH
Confidence            888754       112233489999999998999999999999999999999988 46766664 33  34444455555


Q ss_pred             HHHHhhc
Q 021156          305 AWHAQQE  311 (316)
Q Consensus       305 ~~~~~~~  311 (316)
                      ++++++.
T Consensus       303 ~~A~~~g  309 (388)
T 2nql_A          303 ALAAEHG  309 (388)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHcC
Confidence            6665543

>2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A*

Probab=96.99  E-value=0.0028  Score=60.62  Aligned_cols=142  Identities=14%  Similarity=0.135  Sum_probs=97.3

Q ss_pred             HHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHH
Q 021156          145 DNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLA  224 (316)
Q Consensus       145 e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~  224 (316)
                      +.++++.++|.+.+=+-... .+.+.+.+.++.+.+.+|++ +.+.+|+.          .+|...   +..++++.+.+
T Consensus       168 ~~a~~~~~~Gf~~vKik~g~-~~~~~~~e~v~avR~avg~d-~~l~vDan----------~~~~~~---~a~~~~~~l~~  232 (393)
T 2og9_A          168 VNASASIERGIGGIKLKVGQ-PDGALDIARVTAVRKHLGDA-VPLMVDAN----------QQWDRP---TAQRMCRIFEP  232 (393)
T ss_dssp             HHHHHHHHTTCCCEEEECCC-SCHHHHHHHHHHHHHHHCTT-SCEEEECT----------TCCCHH---HHHHHHHHHGG
T ss_pred             HHHHHHHHcCCCEEEEecCC-CCHHHHHHHHHHHHHHcCCC-CEEEEECC----------CCCCHH---HHHHHHHHHHh
Confidence            45777888998865542110 11011378888888889753 45677873          255422   35678888888


Q ss_pred             cCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHH
Q 021156          225 SYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVV  304 (316)
Q Consensus       225 ~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~  304 (316)
                      .|+..+  -     .-....|++.++++++.+++||.+.+.+.+.++++++++.+ .++.+.+--+-  .+|-....++.
T Consensus       233 ~~i~~i--E-----~P~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~-~~d~v~ik~~~--~GGit~~~~i~  302 (393)
T 2og9_A          233 FNLVWI--E-----EPLDAYDHEGHAALALQFDTPIATGEMLTSAAEHGDLIRHR-AADYLMPDAPR--VGGITPFLKIA  302 (393)
T ss_dssp             GCCSCE--E-----CCSCTTCHHHHHHHHHHCSSCEEECTTCCSHHHHHHHHHTT-CCSEECCCHHH--HTSHHHHHHHH
T ss_pred             hCCCEE--E-----CCCCcccHHHHHHHHHhCCCCEEeCCCcCCHHHHHHHHHCC-CCCEEeeCccc--cCCHHHHHHHH
Confidence            888743  1     12233589999999998999999999999999999999998 47777776555  55644455566


Q ss_pred             HHHHhhc
Q 021156          305 AWHAQQE  311 (316)
Q Consensus       305 ~~~~~~~  311 (316)
                      ++++++.
T Consensus       303 ~~A~~~g  309 (393)
T 2og9_A          303 SLAEHAG  309 (393)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHcC
Confidence            6665543

>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5

Probab=96.99  E-value=0.001  Score=58.79  Aligned_cols=83  Identities=11%  Similarity=0.034  Sum_probs=58.0

Q ss_pred             CHHHHHHHHHHcCCCcc--eEEEecCC-----cccHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeee
Q 021156           94 SAAEFANLYKEDGLTGG--HAIMLGAD-----PLSKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVF  165 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l--~lvDLda~-----~~~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~  165 (316)
                      ++.+ ++...+.|++.+  ++.-....     ..+...+.+..+. ++|+++.|||+ .+++.+++++||+.|++|++++
T Consensus       142 t~~e-a~~a~~~Gad~i~~~v~g~~~~~~~~~~~~~~~i~~~~~~-~ipvia~GGI~s~~~~~~~~~~Gad~v~vGsal~  219 (234)
T 1yxy_A          142 TFDE-GLVAHQAGIDFVGTTLSGYTPYSRQEAGPDVALIEALCKA-GIAVIAEGKIHSPEEAKKINDLGVAGIVVGGAIT  219 (234)
T ss_dssp             SHHH-HHHHHHTTCSEEECTTTTSSTTSCCSSSCCHHHHHHHHHT-TCCEEEESCCCSHHHHHHHHTTCCSEEEECHHHH
T ss_pred             CHHH-HHHHHHcCCCEEeeeccccCCCCcCCCCCCHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHCCCCEEEEchHHh
Confidence            4554 677778898876  44433221     1234445555555 89999999999 6999999999999999999877


Q ss_pred             cCCCCCHHHHHHHHHHh
Q 021156          166 NNGQMDLERLKDLVRVV  182 (316)
Q Consensus       166 ~~~~~~~eli~ei~~~~  182 (316)
                      .-    .+.++++.+.+
T Consensus       220 ~p----~~~~~~l~~~~  232 (234)
T 1yxy_A          220 RP----KEIAERFIEAL  232 (234)
T ss_dssp             CH----HHHHHHHHHHT
T ss_pred             Ch----HHHHHHHHHHH
Confidence            61    34556665543

>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5

Probab=96.98  E-value=0.001  Score=58.16  Aligned_cols=72  Identities=11%  Similarity=0.032  Sum_probs=48.8

Q ss_pred             CHHHHHHHHHHcCCCcceEEEe--cCC-------cccHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCe
Q 021156           94 SAAEFANLYKEDGLTGGHAIML--GAD-------PLSKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSY  163 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDL--da~-------~~~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~  163 (316)
                      +|.+ ++...+.|++.+.+..-  ...       ..+...+.+..+.+++|+++.|||+ .+++.+++++||+.|++|++
T Consensus       128 t~~e-~~~~~~~G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~ipvia~GGI~~~~~~~~~~~~Gad~v~vG~a  206 (223)
T 1y0e_A          128 TVEE-AKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVITPDMYKRVMDLGVHCSVVGGA  206 (223)
T ss_dssp             SHHH-HHHHHHTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHCCSEEEEESSCCSHHHHHHHHHTTCSEEEECHH
T ss_pred             CHHH-HHHHHHcCCCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhhCCCCEEEecCCCCHHHHHHHHHcCCCEEEEChH
Confidence            5665 55567788875432111  000       1122233444445789999999996 69999999999999999999


Q ss_pred             eec
Q 021156          164 VFN  166 (316)
Q Consensus       164 ~~~  166 (316)
                      +++
T Consensus       207 l~~  209 (223)
T 1y0e_A          207 ITR  209 (223)
T ss_dssp             HHC
T ss_pred             HcC
Confidence            766

>3stp_A Galactonate dehydratase, putative; PSI biology, structural genomics, NEW YORK structural genomi research consortium; 1.88A {Labrenzia aggregata iam 12614} PDB: 3sqs_A 3ssz_A

Probab=96.94  E-value=0.0048  Score=59.63  Aligned_cols=139  Identities=13%  Similarity=0.097  Sum_probs=98.4

Q ss_pred             HHHHHHHHcCCCEEEe--CCe-------eecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCH
Q 021156          145 DNSLSYIEEGATHVIV--TSY-------VFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYL  215 (316)
Q Consensus       145 e~~~~~l~~Gad~VVi--gt~-------~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~  215 (316)
                      ++++++.+.|.+.+=+  |..       ...    +.+.++.+.+.+|+ .+-+.+|+.          .+|...   +.
T Consensus       185 ~~a~~~~~~Gf~~iKik~g~gp~dg~~~~~~----die~v~avReavG~-d~~L~vDaN----------~~~~~~---~A  246 (412)
T 3stp_A          185 KEAEEAMKGGYKAFKSRFGYGPKDGMPGMRE----NLKRVEAVREVIGY-DNDLMLECY----------MGWNLD---YA  246 (412)
T ss_dssp             HHHHHHHTTTCSEEEEECCCCGGGHHHHHHH----HHHHHHHHHHHHCS-SSEEEEECT----------TCSCHH---HH
T ss_pred             HHHHHHHHcCCCEEEEecccCcccccchHHH----HHHHHHHHHHHcCC-CCeEEEECC----------CCCCHH---HH
Confidence            3577778889887654  321       122    37889999999985 456778873          356432   45


Q ss_pred             HHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhcc
Q 021156          216 DERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFG  295 (316)
Q Consensus       216 ~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~  295 (316)
                      .++++.+.+.|+..+  -     .-...-|++.++++++.+++||.+.+.+.+.+++.++++.+ .++.+.+--+-  .+
T Consensus       247 i~~~~~Le~~~i~~i--E-----eP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~li~~~-a~D~v~ik~~~--~G  316 (412)
T 3stp_A          247 KRMLPKLAPYEPRWL--E-----EPVIADDVAGYAELNAMNIVPISGGEHEFSVIGCAELINRK-AVSVLQYDTNR--VG  316 (412)
T ss_dssp             HHHHHHHGGGCCSEE--E-----CCSCTTCHHHHHHHHHTCSSCEEECTTCCSHHHHHHHHHTT-CCSEECCCHHH--HT
T ss_pred             HHHHHHHHhcCCCEE--E-----CCCCcccHHHHHHHHhCCCCCEEeCCCCCCHHHHHHHHHcC-CCCEEecChhh--cC
Confidence            678889999888754  1     11222389999999999999999999999999999999988 47777776665  55


Q ss_pred             CcccHHHHHHHHHhhc
Q 021156          296 GNLAYKDVVAWHAQQE  311 (316)
Q Consensus       296 g~~~~~~~~~~~~~~~  311 (316)
                      |-....++.++++++.
T Consensus       317 Git~a~kia~~A~a~g  332 (412)
T 3stp_A          317 GITAAQKINAIAEAAQ  332 (412)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHcC
Confidence            5545555555655543

>2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.30A {Roseovarius nubinhibens} PDB: 3fvd_B

Probab=96.93  E-value=0.003  Score=60.03  Aligned_cols=135  Identities=10%  Similarity=0.046  Sum_probs=95.3

Q ss_pred             HHHHHHHHcCCCEEEe--CC-eeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHH
Q 021156          145 DNSLSYIEEGATHVIV--TS-YVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLD  221 (316)
Q Consensus       145 e~~~~~l~~Gad~VVi--gt-~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~  221 (316)
                      +.++++.+.|.+.+=+  |. ....    +.+.++.+.+.+|+ .+.+.+|+.          .+|...   +..++++.
T Consensus       151 ~~a~~~~~~Gf~~iKik~g~~~~~~----~~e~v~avr~a~g~-~~~l~vDan----------~~~~~~---~a~~~~~~  212 (378)
T 2qdd_A          151 GLIAEAAAQGYRTHSAKIGGSDPAQ----DIARIEAISAGLPD-GHRVTFDVN----------RAWTPA---IAVEVLNS  212 (378)
T ss_dssp             HHHHHHHHHTCCEEEEECCSSCHHH----HHHHHHHHHHSCCT-TCEEEEECT----------TCCCHH---HHHHHHTS
T ss_pred             HHHHHHHHHhhhheeecCCCCChHH----HHHHHHHHHHHhCC-CCEEEEeCC----------CCCCHH---HHHHHHHH
Confidence            4467778889886544  43 1222    37888888888874 455788873          245421   34456666


Q ss_pred             HHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHH
Q 021156          222 FLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYK  301 (316)
Q Consensus       222 ~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~  301 (316)
                      ++ .++ .+       +.-..  |++.++++++.+++||.+.+.+.+.++++++++.+ .++.+.+--+.  .+|.....
T Consensus       213 l~-~~i-~i-------EqP~~--d~~~~~~l~~~~~iPI~~dE~~~~~~~~~~~i~~~-~~d~v~ik~~~--~GGi~~~~  278 (378)
T 2qdd_A          213 VR-ARD-WI-------EQPCQ--TLDQCAHVARRVANPIMLDECLHEFSDHLAAWSRG-ACEGVKIKPNR--VGGLTRAR  278 (378)
T ss_dssp             CC-CCC-EE-------ECCSS--SHHHHHHHHTTCCSCEEECTTCCSHHHHHHHHHHT-CCSEEEECHHH--HTSHHHHH
T ss_pred             hC-CCc-EE-------EcCCC--CHHHHHHHHHhCCCCEEECCCcCCHHHHHHHHHhC-CCCEEEecccc--cCCHHHHH
Confidence            65 555 22       11122  99999999998999999999999999999999988 58889998877  77766666


Q ss_pred             HHHHHHHhhc
Q 021156          302 DVVAWHAQQE  311 (316)
Q Consensus       302 ~~~~~~~~~~  311 (316)
                      ++.++++++.
T Consensus       279 ~i~~~A~~~g  288 (378)
T 2qdd_A          279 QIRDFGVSVG  288 (378)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHcC
Confidence            7777666643

>3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible chloromuconate cycloisomerase...; (beta/alpha)8-barrel; 3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A

Probab=96.93  E-value=0.0043  Score=58.90  Aligned_cols=139  Identities=11%  Similarity=0.075  Sum_probs=99.1

Q ss_pred             HHHHHHHHcCCCE--EEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH
Q 021156          145 DNSLSYIEEGATH--VIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF  222 (316)
Q Consensus       145 e~~~~~l~~Gad~--VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~  222 (316)
                      ++++++.+.|...  +=+|.....+    .+.++.+.+.+|+ .+.+.+|.   |       .+|...   +..++++.+
T Consensus       146 ~~a~~~~~~G~~~~K~KvG~~~~~d----~~~v~avR~~~g~-~~~l~vDa---N-------~~~~~~---~A~~~~~~l  207 (368)
T 3q45_A          146 ADAVQIKKNGFEIIKVKVGGSKELD----VERIRMIREAAGD-SITLRIDA---N-------QGWSVE---TAIETLTLL  207 (368)
T ss_dssp             HHHHHHHHTTCSEEEEECCSCHHHH----HHHHHHHHHHHCS-SSEEEEEC---T-------TCBCHH---HHHHHHHHH
T ss_pred             HHHHHHHHcCCCeEEEEecCCHHHH----HHHHHHHHHHhCC-CCeEEEEC---C-------CCCChH---HHHHHHHHH
Confidence            4467778889875  4456544444    8899999999985 45678887   3       356532   356788889


Q ss_pred             HHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHH
Q 021156          223 LASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKD  302 (316)
Q Consensus       223 ~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~  302 (316)
                      .+.++..+  -     .-....|++.++++++.+++||.+.+.+.+.+|+.++++.+ .++.+.+--+.  .+|-....+
T Consensus       208 ~~~~i~~i--E-----qP~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~~~~~-~~d~v~~k~~~--~GGit~~~~  277 (368)
T 3q45_A          208 EPYNIQHC--E-----EPVSRNLYTALPKIRQACRIPIMADESCCNSFDAERLIQIQ-ACDSFNLKLSK--SAGITNALN  277 (368)
T ss_dssp             GGGCCSCE--E-----CCBCGGGGGGHHHHHHTCSSCEEESTTCCSHHHHHHHHHTT-CCSEEEECTTT--TTSHHHHHH
T ss_pred             hhcCCCEE--E-----CCCChhHHHHHHHHHhhCCCCEEEcCCcCCHHHHHHHHHcC-CCCeEEechhh--cCCHHHHHH
Confidence            88887744  1     11122367888999988999999999999999999999987 47777777666  666555556


Q ss_pred             HHHHHHhhc
Q 021156          303 VVAWHAQQE  311 (316)
Q Consensus       303 ~~~~~~~~~  311 (316)
                      +.++++++.
T Consensus       278 i~~~A~~~g  286 (368)
T 3q45_A          278 IIRLAEQAH  286 (368)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHcC
Confidence            666665543

>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A

Probab=96.93  E-value=0.0014  Score=59.17  Aligned_cols=74  Identities=14%  Similarity=0.076  Sum_probs=49.6

Q ss_pred             CHHHHHHHHHHcCCCcceEEEec---CCc----ccHHHHHHHHH-hCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCee
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLG---ADP----LSKAAAIEALH-AYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYV  164 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLd---a~~----~~~~~i~~~v~-~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~  164 (316)
                      ++.+.++.+...+...+++.-+-   +..    ......++.++ ..++|+.+||||+ .+++.+++++|||.|++||+.
T Consensus       154 t~~e~~~~~~~~~~g~v~~~s~~G~tG~~~~~~~~~~~~i~~v~~~~~~pI~vgGGI~~~e~~~~~~~~GAdgvvVGSai  233 (262)
T 1rd5_A          154 IPEDRMKEITKASEGFVYLVSVNGVTGPRANVNPRVESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIGSAM  233 (262)
T ss_dssp             SCHHHHHHHHHHCCSCEEEECSSCCBCTTSCBCTHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEECHHH
T ss_pred             CCHHHHHHHHhcCCCeEEEecCCCCCCCCcCCCchHHHHHHHHHhhcCCeEEEECCcCCHHHHHHHHHcCCCEEEEChHH
Confidence            45556666666554444443332   221    11222344444 4689999999999 699999999999999999998


Q ss_pred             ecC
Q 021156          165 FNN  167 (316)
Q Consensus       165 ~~~  167 (316)
                      ++.
T Consensus       234 ~~~  236 (262)
T 1rd5_A          234 VRQ  236 (262)
T ss_dssp             HHH
T ss_pred             HhH
Confidence            753

>2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40}

Probab=96.92  E-value=0.0035  Score=59.37  Aligned_cols=136  Identities=11%  Similarity=0.013  Sum_probs=95.6

Q ss_pred             HHHHHHHHcCCCEEEe--CCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH
Q 021156          145 DNSLSYIEEGATHVIV--TSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF  222 (316)
Q Consensus       145 e~~~~~l~~Gad~VVi--gt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~  222 (316)
                      +.++++.+.|.+.+=+  |.....    +.+.++.+.+.+|+ .+.+.+|+.   +       +|..   .+..++++.+
T Consensus       152 ~~a~~~~~~Gf~~iKik~g~~~~~----~~e~v~avr~a~g~-~~~l~vDan---~-------~~~~---~~a~~~~~~l  213 (371)
T 2ps2_A          152 ARVAKYRAKGYKGQSVKISGEPVT----DAKRITAALANQQP-DEFFIVDAN---G-------KLSV---ETALRLLRLL  213 (371)
T ss_dssp             HHHHHHHTTTCCEEEEECCSCHHH----HHHHHHHHTTTCCT-TCEEEEECT---T-------BCCH---HHHHHHHHHS
T ss_pred             HHHHHHHHhChheEEeecCCCHHH----HHHHHHHHHHhcCC-CCEEEEECC---C-------CcCH---HHHHHHHHHH
Confidence            4567778889887554  322222    26788888777874 456688873   2       4542   1356677777


Q ss_pred             -HHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHH
Q 021156          223 -LASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYK  301 (316)
Q Consensus       223 -~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~  301 (316)
                       .+.++ .+  -    +. ..  |++.++++++.+++||.+.+.+.+.++++++++.+ .++.+.+--+-  .+|.....
T Consensus       214 ~~~~~i-~i--E----~P-~~--~~~~~~~l~~~~~iPI~~dE~~~~~~~~~~~i~~~-~~d~v~ik~~~--~GGit~~~  280 (371)
T 2ps2_A          214 PHGLDF-AL--E----AP-CA--TWRECISLRRKTDIPIIYDELATNEMSIVKILADD-AAEGIDLKISK--AGGLTRGR  280 (371)
T ss_dssp             CTTCCC-EE--E----CC-BS--SHHHHHHHHTTCCSCEEESTTCCSHHHHHHHHHHT-CCSEEEEEHHH--HTSHHHHH
T ss_pred             HhhcCC-cC--c----CC-cC--CHHHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHhC-CCCEEEechhh--cCCHHHHH
Confidence             77777 32  1    11 11  89999999998999999999999999999999988 48888887776  66655566


Q ss_pred             HHHHHHHhhc
Q 021156          302 DVVAWHAQQE  311 (316)
Q Consensus       302 ~~~~~~~~~~  311 (316)
                      ++.++++++.
T Consensus       281 ~i~~~A~~~g  290 (371)
T 2ps2_A          281 RQRDICLAAG  290 (371)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHcC
Confidence            6666666543

>1sjd_A N-acylamino acid racemase; lyase, isomerase; HET: NPG; 1.87A {Amycolatopsis SP} SCOP: c.1.11.2 d.54.1.1 PDB: 1sja_A* 1sjb_A* 1sjc_A*

Probab=96.92  E-value=0.011  Score=55.79  Aligned_cols=138  Identities=14%  Similarity=0.094  Sum_probs=97.3

Q ss_pred             HHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHH
Q 021156          145 DNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLA  224 (316)
Q Consensus       145 e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~  224 (316)
                      +.++++.+.|.+.+=+-..    ++.+.+.++.+.+.+|++ +.+.+|+.          .+|..   -+ .++++.+.+
T Consensus       147 ~~a~~~~~~Gf~~vKik~~----~~~~~e~v~avr~~~g~~-~~l~vDan----------~~~~~---~~-~~~~~~l~~  207 (368)
T 1sjd_A          147 DVVGGYLDEGYVRIKLKIE----PGWDVEPVRAVRERFGDD-VLLQVDAN----------TAYTL---GD-APQLARLDP  207 (368)
T ss_dssp             HHHHHHHHHTCSEEEEECB----TTBSHHHHHHHHHHHCTT-SEEEEECT----------TCCCG---GG-HHHHHTTGG
T ss_pred             HHHHHHHHhCccEEEEecC----chhHHHHHHHHHHhcCCC-ceEEEecc----------CCCCH---HH-HHHHHHHHh
Confidence            4567778899887655321    233589999999999854 45778873          25643   24 678888888


Q ss_pred             cCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHH
Q 021156          225 SYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVV  304 (316)
Q Consensus       225 ~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~  304 (316)
                      .|+..+  -     .-....|++.++++++.+++||.+.+.+.+.+++.++++.+ .++.+.+=-+-  .+|-....++.
T Consensus       208 ~~i~~i--E-----~P~~~~~~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~-~~d~v~ik~~~--~GGit~~~~i~  277 (368)
T 1sjd_A          208 FGLLLI--E-----QPLEEEDVLGHAELARRIQTPICLDESIVSARAAADAIKLG-AVQIVNIKPGR--VGGYLEARRVH  277 (368)
T ss_dssp             GCCSEE--E-----CCSCTTCHHHHHHHHTTCSSCEEESTTCCSHHHHHHHHHTT-CCSEEEECTTT--TTSHHHHHHHH
T ss_pred             cCCCeE--e-----CCCChhhHHHHHHHHHhCCCCEEECCCcCCHHHHHHHHHcC-CCCEEEecccc--cCCHHHHHHHH
Confidence            888743  1     11233489999999998999999999999999999999988 47777775544  44543445555


Q ss_pred             HHHHhhc
Q 021156          305 AWHAQQE  311 (316)
Q Consensus       305 ~~~~~~~  311 (316)
                      ++++++.
T Consensus       278 ~~A~~~g  284 (368)
T 1sjd_A          278 DVCAAHG  284 (368)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHcC
Confidence            5555543

>3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A

Probab=96.90  E-value=0.0044  Score=59.73  Aligned_cols=153  Identities=12%  Similarity=0.062  Sum_probs=99.8

Q ss_pred             CcEEEecCCC-H----HHHHHHHHcCCCEEE-eCCeee------cCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeE
Q 021156          134 GGLQVGGGIN-S----DNSLSYIEEGATHVI-VTSYVF------NNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYA  201 (316)
Q Consensus       134 ~pl~vGGGIr-~----e~~~~~l~~Gad~VV-igt~~~------~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~  201 (316)
                      +|+..-.|.. .    ++++++.+.|...+= +|....      .+.+-+.+.++.+.+.+|+ .+-+.+|..       
T Consensus       115 v~~y~~~~~~~~e~~~~~a~~~~~~G~~~iKl~G~~~~~~~~~~~~~~~d~e~v~avR~avG~-d~~L~vDaN-------  186 (405)
T 3rr1_A          115 MRTYSWVGGDRPADVIAGMKALQAGGFDHFKLNGCEEMGIIDTSRAVDAAVARVAEIRSAFGN-TVEFGLDFH-------  186 (405)
T ss_dssp             EEEEEECCCSSHHHHHHHHHHHHHTTCCEEEEESCCSSSCBCSHHHHHHHHHHHHHHHHTTGG-GSEEEEECC-------
T ss_pred             eeeeEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCCcccccccchhHHHHHHHHHHHHHHhCC-CceEEEECC-------
Confidence            4554444443 2    446778888988543 454210      0000126888999999975 455778873       


Q ss_pred             EEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCC
Q 021156          202 IVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIG  281 (316)
Q Consensus       202 v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g  281 (316)
                         .+|...   +..++++.+.+.|+..+  -.     -....|++.++++++.+++||.+.+.+.+.+++.++++.+ .
T Consensus       187 ---~~~~~~---~A~~~~~~L~~~~i~~i--Ee-----P~~~~d~~~~~~l~~~~~iPIa~dE~i~~~~~~~~~l~~~-a  252 (405)
T 3rr1_A          187 ---GRVSAP---MAKVLIKELEPYRPLFI--EE-----PVLAEQAETYARLAAHTHLPIAAGERMFSRFDFKRVLEAG-G  252 (405)
T ss_dssp             ---SCBCHH---HHHHHHHHHGGGCCSCE--EC-----SSCCSSTHHHHHHHTTCSSCEEECTTCCSHHHHHHHHHHC-C
T ss_pred             ---CCCCHH---HHHHHHHHHHhcCCCEE--EC-----CCCcccHHHHHHHHhcCCCCEEecCCcCCHHHHHHHHHHh-C
Confidence               356532   35678888988887754  11     1222388999999999999999999999999999999988 4


Q ss_pred             cCEEEEccchhhccCcccHHHHHHHHHhh
Q 021156          282 RVDVTVGSALDIFGGNLAYKDVVAWHAQQ  310 (316)
Q Consensus       282 ~~gVivG~Al~~~~g~~~~~~~~~~~~~~  310 (316)
                      ++.+.+--+-  .+|-....++.++++++
T Consensus       253 ~d~v~~d~~~--~GGitea~kia~lA~~~  279 (405)
T 3rr1_A          253 VSILQPDLSH--AGGITECVKIAAMAEAY  279 (405)
T ss_dssp             CSEECCBTTT--TTHHHHHHHHHHHHHTT
T ss_pred             CCeEEEChhh--cCCHHHHHHHHHHHHHc
Confidence            7767666555  55543444555555543

>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...

Probab=96.90  E-value=0.0015  Score=59.40  Aligned_cols=74  Identities=16%  Similarity=0.093  Sum_probs=49.0

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCC--c-----ccHHHHHHHHH-hCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCee
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGAD--P-----LSKAAAIEALH-AYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYV  164 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~--~-----~~~~~i~~~v~-~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~  164 (316)
                      +|.+.++.+.+.+-..++++-+.+.  .     ......++.++ ..++|+.+||||+ .+++.+++.+|||.||+||+.
T Consensus       158 t~~~~i~~i~~~~~g~v~~~s~~G~tG~~~~~~~~~~~~i~~lr~~~~~pi~vggGI~t~e~~~~~~~agAD~vVVGSai  237 (268)
T 1qop_A          158 ADDDLLRQVASYGRGYTYLLSRSGVTGAENRGALPLHHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISGSAI  237 (268)
T ss_dssp             CCHHHHHHHHHHCCSCEEEESSSSCCCSSSCC--CCHHHHHHHHHTTCCCEEEESSCCSHHHHHHHHHTTCSEEEECHHH
T ss_pred             CCHHHHHHHHhhCCCcEEEEecCCcCCCccCCCchHHHHHHHHHhccCCcEEEECCCCCHHHHHHHHHcCCCEEEEChHH
Confidence            4445556666554333444433321  1     12234445555 4679999999999 699999999999999999998


Q ss_pred             ecC
Q 021156          165 FNN  167 (316)
Q Consensus       165 ~~~  167 (316)
                      .+.
T Consensus       238 ~~~  240 (268)
T 1qop_A          238 VKI  240 (268)
T ss_dssp             HHH
T ss_pred             hhh
Confidence            653

>3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC, muconate lactonizing EN structural genomics, protein structure initiative; 2.10A {Shewanella pealeana}

Probab=96.90  E-value=0.0042  Score=59.51  Aligned_cols=138  Identities=15%  Similarity=-0.005  Sum_probs=97.9

Q ss_pred             HHHHHHHcCCCEEEe---C---CeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCc-ceecccCHHHH
Q 021156          146 NSLSYIEEGATHVIV---T---SYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRW-QKFSDVYLDER  218 (316)
Q Consensus       146 ~~~~~l~~Gad~VVi---g---t~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw-~~~~~~~~~e~  218 (316)
                      .++++.+.|...+=+   |   .....+    .+.++.+.+.+|++ +.+.+|..          .+| ...   +..++
T Consensus       159 ~a~~~~~~G~~~~K~~k~g~~~~~~~~d----~~~v~avR~a~G~d-~~l~vDan----------~~~~~~~---~A~~~  220 (394)
T 3mqt_A          159 LIAKAKERGAKAVKVCIIPNDKVSDKEI----VAYLRELREVIGWD-MDMMVDCL----------YRWTDWQ---KARWT  220 (394)
T ss_dssp             HHHHHHHTTCSEEEEECCCCTTSCHHHH----HHHHHHHHHHHCSS-SEEEEECT----------TCCSCHH---HHHHH
T ss_pred             HHHHHHHcCCCEEEecccCCCccCHHHH----HHHHHHHHHHhCCC-CeEEEECC----------CCCCCHH---HHHHH
Confidence            577788899886544   4   222333    78899999999854 55778873          356 321   35678


Q ss_pred             HHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcc
Q 021156          219 VLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNL  298 (316)
Q Consensus       219 a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~  298 (316)
                      ++.+.+.|+..+  -     .-....|++.++++++.+++||.+.+.+.+.+++.++++.+ .++.+.+--+-  .+|-.
T Consensus       221 ~~~L~~~~i~~i--E-----eP~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~-~~d~v~~k~~~--~GGit  290 (394)
T 3mqt_A          221 FRQLEDIDLYFI--E-----ACLQHDDLIGHQKLAAAINTRLCGAEMSTTRFEAQEWLEKT-GISVVQSDYNR--CGGVT  290 (394)
T ss_dssp             HHHTGGGCCSEE--E-----SCSCTTCHHHHHHHHHHSSSEEEECTTCCHHHHHHHHHHHH-CCSEECCCTTT--SSCHH
T ss_pred             HHHHhhcCCeEE--E-----CCCCcccHHHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHcC-CCCeEecCccc--cCCHH
Confidence            888988888754  1     11222389999999999999999999999999999999987 37777776666  66655


Q ss_pred             cHHHHHHHHHhhc
Q 021156          299 AYKDVVAWHAQQE  311 (316)
Q Consensus       299 ~~~~~~~~~~~~~  311 (316)
                      ...++.++++++.
T Consensus       291 ~~~~ia~~A~~~g  303 (394)
T 3mqt_A          291 ELLRIMDICEHHN  303 (394)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcC
Confidence            5555666665543

>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2

Probab=96.89  E-value=0.0016  Score=58.08  Aligned_cols=86  Identities=14%  Similarity=0.145  Sum_probs=56.3

Q ss_pred             cCHHHHHHHHHHcC-CCcceEEEecCC---c---c-cHHHHHHHHHhC-CCcEEEecCCCHHHHHHHHHcCCCEEEeCCe
Q 021156           93 KSAAEFANLYKEDG-LTGGHAIMLGAD---P---L-SKAAAIEALHAY-PGGLQVGGGINSDNSLSYIEEGATHVIVTSY  163 (316)
Q Consensus        93 ~~p~e~a~~~~~~G-~~~l~lvDLda~---~---~-~~~~i~~~v~~~-~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~  163 (316)
                      ..|++.++.+...| ++.+.+.=.+.+   +   + ..+.+.+..+.. +.+++|.|||+.+.+..+.++|||.+|+||+
T Consensus       124 ~tp~~~~~~~l~~g~~D~VlvmsV~pGf~gq~f~~~~l~ki~~lr~~~~~~~I~VdGGI~~~ti~~~~~aGAd~~V~Gsa  203 (227)
T 1tqx_A          124 KTDVQKLVPILDTNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYKNLNIQVDGGLNIETTEISASHGANIIVAGTS  203 (227)
T ss_dssp             TSCGGGGHHHHTTTCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTCEEEEESSCCHHHHHHHHHHTCCEEEESHH
T ss_pred             CCcHHHHHHHhhcCCcCEEEEeeeccCCCCcccchHHHHHHHHHHHhccCCeEEEECCCCHHHHHHHHHcCCCEEEEeHH
Confidence            35667777776655 665544444432   1   1 223333332233 6899999999999999999999999999999


Q ss_pred             eecCCCCCH-HHHHHHHH
Q 021156          164 VFNNGQMDL-ERLKDLVR  180 (316)
Q Consensus       164 ~~~~~~~~~-eli~ei~~  180 (316)
                      .++.+  || +.++++.+
T Consensus       204 If~~~--d~~~~i~~l~~  219 (227)
T 1tqx_A          204 IFNAE--DPKYVIDTMRV  219 (227)
T ss_dssp             HHTCS--SHHHHHHHHHH
T ss_pred             HhCCC--CHHHHHHHHHH
Confidence            98641  13 44555544

>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A

Probab=96.88  E-value=0.0012  Score=58.45  Aligned_cols=86  Identities=14%  Similarity=0.132  Sum_probs=54.8

Q ss_pred             CHHHHHHHHHHc--CCCcceEEEecCC---c---c-cHHHHHHHHHhC-CCcEEEecCCCHHHHHHHHHcCCCEEEeCCe
Q 021156           94 SAAEFANLYKED--GLTGGHAIMLGAD---P---L-SKAAAIEALHAY-PGGLQVGGGINSDNSLSYIEEGATHVIVTSY  163 (316)
Q Consensus        94 ~p~e~a~~~~~~--G~~~l~lvDLda~---~---~-~~~~i~~~v~~~-~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~  163 (316)
                      +|.+..+.+...  +++.+.+.-...+   .   . ..+.+.++.+.. +.|+.++|||+.+++..+.++|||.+|+||+
T Consensus       124 t~~e~~~~~~~~~~~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~~~~pi~v~GGI~~~ni~~~~~aGaD~vvvGsa  203 (228)
T 1h1y_A          124 TPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGPSTIDVAASAGANCIVAGSS  203 (228)
T ss_dssp             SCGGGGHHHHHSSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTSEEEEESSCSTTTHHHHHHHTCCEEEESHH
T ss_pred             CCHHHHHHHHhcCCCCCEEEEEeecCCCCcccCCHHHHHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcCCCEEEECHH
Confidence            455666666665  6775444333322   1   1 122333333345 7899999999998999999999999999999


Q ss_pred             eecCCCCCH-HHHHHHHHH
Q 021156          164 VFNNGQMDL-ERLKDLVRV  181 (316)
Q Consensus       164 ~~~~~~~~~-eli~ei~~~  181 (316)
                      .++.+  || +.++++.+.
T Consensus       204 i~~~~--d~~~~~~~l~~~  220 (228)
T 1h1y_A          204 IFGAA--EPGEVISALRKS  220 (228)
T ss_dssp             HHTSS--CHHHHHHHHHHH
T ss_pred             HHCCC--CHHHHHHHHHHH
Confidence            98742  23 344444443

>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A

Probab=96.87  E-value=0.0037  Score=57.82  Aligned_cols=178  Identities=15%  Similarity=0.082  Sum_probs=111.5

Q ss_pred             CHHHHHHHHHHcCCCcceEEEec-C----C-c----ccHHHHH----HHHHhCCCcEEEec----CCC---H-HHHHHHH
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLG-A----D-P----LSKAAAI----EALHAYPGGLQVGG----GIN---S-DNSLSYI  151 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLd-a----~-~----~~~~~i~----~~v~~~~~pl~vGG----GIr---~-e~~~~~l  151 (316)
                      |+. .|+...++|++.+++=|.. +    + +    ....++.    .+.+.++.|++++.    |-.   . +.++++.
T Consensus        26 D~~-sA~~~~~aG~~ai~vs~~~~a~~~~G~pD~~~vt~~em~~~~~~I~~~~~~PviaD~d~Gyg~~~~~~~~~v~~l~  104 (295)
T 1xg4_A           26 NAN-HALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVCSLPLLVDADIGFGSSAFNVARTVKSMI  104 (295)
T ss_dssp             SHH-HHHHHHHTTCSCEEECHHHHHHTTTCCCSSSCSCHHHHHHHHHHHHHHCCSCEEEECTTCSSSSHHHHHHHHHHHH
T ss_pred             CHH-HHHHHHHcCCCEEEECchHhhhhhcCCCCCCCCCHHHHHHHHHHHHhhCCCCEEecCCcccCCCHHHHHHHHHHHH
Confidence            676 7888889999988888762 1    1 1    1233333    33345789999976    433   2 6688899


Q ss_pred             HcCCCEEEeCCeee-cC-----CC-C-C-HHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCC-cceecccCHHHHHHH
Q 021156          152 EEGATHVIVTSYVF-NN-----GQ-M-D-LERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDR-WQKFSDVYLDERVLD  221 (316)
Q Consensus       152 ~~Gad~VVigt~~~-~~-----~~-~-~-~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~g-w~~~~~~~~~e~a~~  221 (316)
                      ++||.-|-|--... +.     |+ + + .+.+.++....- .++  ..|++.     .-++.. |.. .-.+.++.++.
T Consensus       105 ~aGa~gv~iEd~~~~k~cgH~~gk~L~p~~~~~~~I~Aa~~-a~~--~~~~~i-----~aRtda~~~~-gl~~ai~ra~a  175 (295)
T 1xg4_A          105 KAGAAGLHIEDQVGAKRSGHRPNKAIVSKEEMVDRIRAAVD-AKT--DPDFVI-----MARTDALAVE-GLDAAIERAQA  175 (295)
T ss_dssp             HHTCSEEEEECBCSSCCCTTSSSCCBCCHHHHHHHHHHHHH-HCS--STTSEE-----EEEECCHHHH-CHHHHHHHHHH
T ss_pred             HcCCeEEEECCCCCCcccCCCCCCccCCHHHHHHHHHHHHH-hcc--CCCcEE-----EEecHHhhhc-CHHHHHHHHHH
Confidence            99999998732221 10     11 1 1 244455544331 111  111211     112221 111 01247889999


Q ss_pred             HHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCC---CCHHHHHHHHHhCCCcCEEEEccch
Q 021156          222 FLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGV---TTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       222 ~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI---~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      +.+.|++.++++.+        ++++.++++.+.+++|++++.-.   ...-...+|.++|  +..|++|.++
T Consensus       176 y~eAGAd~i~~e~~--------~~~~~~~~i~~~~~iP~~~N~~~~g~~p~~~~~eL~~~G--~~~v~~~~~~  238 (295)
T 1xg4_A          176 YVEAGAEMLFPEAI--------TELAMYRQFADAVQVPILANITEFGATPLFTTDELRSAH--VAMALYPLSA  238 (295)
T ss_dssp             HHHTTCSEEEETTC--------CSHHHHHHHHHHHCSCBEEECCSSSSSCCCCHHHHHHTT--CSEEEESSHH
T ss_pred             HHHcCCCEEEEeCC--------CCHHHHHHHHHHcCCCEEEEecccCCCCCCCHHHHHHcC--CCEEEEChHH
Confidence            99999999987665        37889999999889999876543   2334578888898  9999999987

>2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II, NYSGXRC, enolase, structural genomics, protei structure initiative, PSI-2; 1.93A {Azoarcus SP}

Probab=96.87  E-value=0.0062  Score=58.26  Aligned_cols=138  Identities=15%  Similarity=0.144  Sum_probs=96.6

Q ss_pred             HHHHHHHHcCCCEEEe--CCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH
Q 021156          145 DNSLSYIEEGATHVIV--TSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF  222 (316)
Q Consensus       145 e~~~~~l~~Gad~VVi--gt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~  222 (316)
                      +.++++.+.|.+.+=+  |.....    +.+.++.+.+.+|++ +-+.+|+.          .+|...   +..++++.+
T Consensus       151 ~~a~~~~~~Gf~~vKik~g~~~~~----~~e~v~avR~a~g~d-~~l~vDan----------~~~~~~---~a~~~~~~l  212 (397)
T 2qde_A          151 EEALAVLREGFHFVKLKAGGPLKA----DIAMVAEVRRAVGDD-VDLFIDIN----------GAWTYD---QALTTIRAL  212 (397)
T ss_dssp             HHHHHHHHHTCSCEEEECCSCHHH----HHHHHHHHHHHHCTT-SCEEEECT----------TCCCHH---HHHHHHHHH
T ss_pred             HHHHHHHHhhhhheeecccCCHHH----HHHHHHHHHHhhCCC-CEEEEECC----------CCCCHH---HHHHHHHHH
Confidence            4577788889886544  432222    378888888889754 45678873          256432   356788888


Q ss_pred             HHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHH
Q 021156          223 LASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKD  302 (316)
Q Consensus       223 ~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~  302 (316)
                      .+.|+..+  -     .-....|++.++++++.+++||.+.+.+.+.++++++++.+ .++.+.+--+-  .+|-....+
T Consensus       213 ~~~~i~~i--E-----qP~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~-~~d~v~ik~~~--~GGit~~~~  282 (397)
T 2qde_A          213 EKYNLSKI--E-----QPLPAWDLDGMARLRGKVATPIYADESAQELHDLLAIINKG-AADGLMIKTQK--AGGLLKAQR  282 (397)
T ss_dssp             GGGCCSCE--E-----CCSCTTCHHHHHHHHTTCSSCEEESTTCCSHHHHHHHHHHT-CCSEEEECHHH--HTSHHHHHH
T ss_pred             HhCCCCEE--E-----CCCChhhHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHcC-CCCEEEEeccc--cCCHHHHHH
Confidence            88888743  1     11233489999999998999999999999999999999988 47778776655  555444455


Q ss_pred             HHHHHHhh
Q 021156          303 VVAWHAQQ  310 (316)
Q Consensus       303 ~~~~~~~~  310 (316)
                      +.++++++
T Consensus       283 i~~~A~~~  290 (397)
T 2qde_A          283 WLTLARLA  290 (397)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHc
Confidence            55555554

>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A

Probab=96.86  E-value=0.0024  Score=56.51  Aligned_cols=138  Identities=9%  Similarity=0.095  Sum_probs=82.4

Q ss_pred             CCcEEEecCCC--HHH-HHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcce
Q 021156          133 PGGLQVGGGIN--SDN-SLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQK  209 (316)
Q Consensus       133 ~~pl~vGGGIr--~e~-~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~  209 (316)
                      +.++..+-=+-  .+. ++.+.++|||.+.+-...-..   ..+...+..+.+|.....+.+++.               
T Consensus        58 ~~~iflDlKl~Dip~t~~~~~~~~Gad~vtVH~~~g~~---~l~~a~~~~~~~g~~~~~~~Vt~l---------------  119 (221)
T 3exr_A           58 DKIIVADTKCADAGGTVAKNNAVRGADWMTCICSATIP---TMKAARKAIEDINPDKGEIQVELY---------------  119 (221)
T ss_dssp             TSEEEEEEEECSCHHHHHHHHHTTTCSEEEEETTSCHH---HHHHHHHHHHHHCTTTCEEEEECC---------------
T ss_pred             CCcEEEEEEeeccHHHHHHHHHHcCCCEEEEeccCCHH---HHHHHHHHHHhcCCCcceEEEEEc---------------
Confidence            45666665553  233 455788999998874432110   033333334445522245666654               


Q ss_pred             ecccCHHHHHHHHHHcCCCEEEEeecCCccccCCC--CHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEE
Q 021156          210 FSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGI--DDELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDV  285 (316)
Q Consensus       210 ~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~--d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gV  285 (316)
                       +..+ .+.++.+.+.+++.+++|- ..++...|.  ..+.++.+++.+  +.++.+.||| ++++...+.++|  ++.+
T Consensus       120 -ts~~-~~~~~~~~~~~~~~~v~~~-a~~~~~~Gvv~s~~e~~~ir~~~~~~~~i~v~gGI-~~~~~~~~~~aG--ad~~  193 (221)
T 3exr_A          120 -GDWT-YDQAQQWLDAGISQAIYHQ-SRDALLAGETWGEKDLNKVKKLIEMGFRVSVTGGL-SVDTLKLFEGVD--VFTF  193 (221)
T ss_dssp             -SSCC-HHHHHHHHHTTCCEEEEEC-CHHHHHHTCCCCHHHHHHHHHHHHHTCEEEEESSC-CGGGGGGGTTCC--CSEE
T ss_pred             -CCCC-HHHHHHHHcCCHHHHHHHH-HHhcCCCccccCHHHHHHHHHhhcCCceEEEECCC-CHHHHHHHHHCC--CCEE
Confidence             1112 3455677788998887653 333333443  334445554433  5789999999 557888887777  8999


Q ss_pred             EEccchhhccC
Q 021156          286 TVGSALDIFGG  296 (316)
Q Consensus       286 ivG~Al~~~~g  296 (316)
                      ++||++  |..
T Consensus       194 VvG~~I--~~a  202 (221)
T 3exr_A          194 IAGRGI--TEA  202 (221)
T ss_dssp             EECHHH--HTS
T ss_pred             EECchh--hCC
Confidence            999999  754

>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*

Probab=96.85  E-value=0.0017  Score=56.78  Aligned_cols=87  Identities=17%  Similarity=0.076  Sum_probs=59.0

Q ss_pred             cCHHHHHHHHHHcCCCcceE---EEecC-----CcccHHHHHHHHHhCC-CcEEEecCCCHHHHHHHHHcCCCEEEeCCe
Q 021156           93 KSAAEFANLYKEDGLTGGHA---IMLGA-----DPLSKAAAIEALHAYP-GGLQVGGGINSDNSLSYIEEGATHVIVTSY  163 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~l---vDLda-----~~~~~~~i~~~v~~~~-~pl~vGGGIr~e~~~~~l~~Gad~VVigt~  163 (316)
                      .+|.+ ++...+.|++.+.+   .+-..     .......+.+..+..+ +|++++|||+.+++.+++++||+.|++||.
T Consensus       124 ~t~~e-~~~a~~~g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~~~~pvia~GGI~~~nv~~~~~~Ga~gv~vgs~  202 (227)
T 2tps_A          124 HTMSE-VKQAEEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGITIDNAAPVIQAGADGVSMISA  202 (227)
T ss_dssp             CSHHH-HHHHHHHTCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTTCCCCEEEESSCCTTTSHHHHHTTCSEEEESHH
T ss_pred             CCHHH-HHHHHhCCCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHhCCCCCEEEEcCCCHHHHHHHHHcCCCEEEEhHH
Confidence            36777 45556778886554   12111     1123444545445567 999999999988899999999999999999


Q ss_pred             eecCCCCCH-HHHHHHHHHh
Q 021156          164 VFNNGQMDL-ERLKDLVRVV  182 (316)
Q Consensus       164 ~~~~~~~~~-eli~ei~~~~  182 (316)
                      ++...  || +.++++.+.+
T Consensus       203 i~~~~--d~~~~~~~~~~~~  220 (227)
T 2tps_A          203 ISQAE--DPESAARKFREEI  220 (227)
T ss_dssp             HHTSS--CHHHHHHHHHHHH
T ss_pred             hhcCC--CHHHHHHHHHHHH
Confidence            88531  36 6666666544

>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*

Probab=96.84  E-value=0.0018  Score=61.59  Aligned_cols=83  Identities=20%  Similarity=0.182  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHcCCCcceEEEec--CCcccHHHHHHHH-HhCCCcEEEecCCCHHHHHHHHHcC-CCEEEeCCeeecCCCC
Q 021156           95 AAEFANLYKEDGLTGGHAIMLG--ADPLSKAAAIEAL-HAYPGGLQVGGGINSDNSLSYIEEG-ATHVIVTSYVFNNGQM  170 (316)
Q Consensus        95 p~e~a~~~~~~G~~~l~lvDLd--a~~~~~~~i~~~v-~~~~~pl~vGGGIr~e~~~~~l~~G-ad~VVigt~~~~~~~~  170 (316)
                      ..++++.+.++|++.+|+..-.  +.........+.+ +.+++|++..|||+.++++++++.| ||.|.+|..++.|   
T Consensus       252 ~~~~a~~l~~~G~d~i~v~~~~~~~~~~~~~~~~~~i~~~~~iPvi~~Ggi~~~~a~~~l~~g~aD~V~igR~~i~~---  328 (365)
T 2gou_A          252 YTAAAALLNKHRIVYLHIAEVDWDDAPDTPVSFKRALREAYQGVLIYAGRYNAEKAEQAINDGLADMIGFGRPFIAN---  328 (365)
T ss_dssp             HHHHHHHHHHTTCSEEEEECCBTTBCCCCCHHHHHHHHHHCCSEEEEESSCCHHHHHHHHHTTSCSEEECCHHHHHC---
T ss_pred             HHHHHHHHHHcCCCEEEEeCCCcCCCCCccHHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHCCCcceehhcHHHHhC---
Confidence            4567899999999988876421  1111122333444 4688999999999669999999998 9999999999997   


Q ss_pred             CHHHHHHHHHH
Q 021156          171 DLERLKDLVRV  181 (316)
Q Consensus       171 ~~eli~ei~~~  181 (316)
                       |+++.++.+.
T Consensus       329 -P~l~~~~~~g  338 (365)
T 2gou_A          329 -PDLPERLRHG  338 (365)
T ss_dssp             -TTHHHHHHHT
T ss_pred             -chHHHHHHcC
Confidence             9999999763

>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A*

Probab=96.83  E-value=0.0049  Score=53.94  Aligned_cols=172  Identities=16%  Similarity=0.149  Sum_probs=92.6

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCC--cccHHHHHHHHHh-C-CCcEEEecCC--CHHH-HHHHHHcCCCEEEeCCeeec
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGAD--PLSKAAAIEALHA-Y-PGGLQVGGGI--NSDN-SLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~--~~~~~~i~~~v~~-~-~~pl~vGGGI--r~e~-~~~~l~~Gad~VVigt~~~~  166 (316)
                      +..+..+...+.+ ++++.+|..-.  ...-..+++.+++ . +.++..+--.  ..+. ++.+.++|||.|.+-.+.-.
T Consensus        14 ~~~~~~~~~~~~~-~~v~~~kv~~~~f~~~G~~~i~~l~~~~p~~~v~lD~kl~dip~t~~~~~~~~Gad~itvh~~~g~   92 (216)
T 1q6o_A           14 TMDSAYETTRLIA-EEVDIIEVGTILCVGEGVRAVRDLKALYPHKIVLADAKIADAGKILSRMCFEANADWVTVICCADI   92 (216)
T ss_dssp             SHHHHHHHHHHHG-GGCSEEEECHHHHHHHCTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSCH
T ss_pred             CHHHHHHHHHHhc-ccCCEEEECHHHHHHhCHHHHHHHHHhCCCCeEEEEEEecccHHHHHHHHHhCCCCEEEEeccCCH
Confidence            3444444444444 34566665321  0011124445553 2 3455544433  2333 56788999999988654322


Q ss_pred             CCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCC-
Q 021156          167 NGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGID-  245 (316)
Q Consensus       167 ~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d-  245 (316)
                      +   ..+.+.+..+++|. +  +.+|+.  +        ++.       ....+.+.+.|...+++|- .......|.+ 
T Consensus        93 ~---~l~~~~~~~~~~g~-~--~~~~ll--~--------~~t-------~~~~~~l~~~~~~~~vl~~-a~~~~~~G~~g  148 (216)
T 1q6o_A           93 N---TAKGALDVAKEFNG-D--VQIELT--G--------YWT-------WEQAQQWRDAGIGQVVYHR-SRDAQAAGVAW  148 (216)
T ss_dssp             H---HHHHHHHHHHHTTC-E--EEEEEC--S--------CCC-------HHHHHHHHHTTCCEEEEEC-CHHHHHTTCCC
T ss_pred             H---HHHHHHHHHHHcCC-C--ceeeee--e--------CCC-------hhhHHHHHhcCcHHHHHHH-HHHHHhcCCCC
Confidence            1   02223333344542 2  223321  0        111       1233445556776665532 2222223433 


Q ss_pred             -HHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhcc
Q 021156          246 -DELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFG  295 (316)
Q Consensus       246 -~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~  295 (316)
                       .+.++.+++..  +.|+++.|||+ ++.+.++.+.|  ++.+++||++  |.
T Consensus       149 ~~~~i~~lr~~~~~~~~i~v~GGI~-~~~~~~~~~aG--ad~ivvG~~I--~~  196 (216)
T 1q6o_A          149 GEADITAIKRLSDMGFKVTVTGGLA-LEDLPLFKGIP--IHVFIAGRSI--RD  196 (216)
T ss_dssp             CHHHHHHHHHHHHTTCEEEEESSCC-GGGGGGGTTSC--CSEEEESHHH--HT
T ss_pred             CHHHHHHHHHhcCCCCcEEEECCcC-hhhHHHHHHcC--CCEEEEeehh--cC
Confidence             56666666544  67899999999 78888888888  8999999999  64

>3my9_A Muconate cycloisomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.20A {Azorhizobium caulinodans}

Probab=96.83  E-value=0.0077  Score=57.26  Aligned_cols=138  Identities=13%  Similarity=0.059  Sum_probs=97.8

Q ss_pred             HHHHHHHHcCCCE--EEeCCee-ecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHH
Q 021156          145 DNSLSYIEEGATH--VIVTSYV-FNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLD  221 (316)
Q Consensus       145 e~~~~~l~~Gad~--VVigt~~-~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~  221 (316)
                      ++++++++.|...  +=+|... ..+    .+.++.+.+.+|+ .+.+.+|+.          .+|..   .+..++++.
T Consensus       152 ~~a~~~~~~G~~~~K~Kvg~~~~~~d----~~~v~avR~~~g~-~~~l~vDan----------~~~~~---~~A~~~~~~  213 (377)
T 3my9_A          152 ERMRAMVPAGHTVFKMKTGVKPHAEE----LRILETMRGEFGE-RIDLRLDFN----------QALTP---FGAMKILRD  213 (377)
T ss_dssp             HHHHHHTTTTCCEEEEECSSSCHHHH----HHHHHHHHHHHGG-GSEEEEECT----------TCCCT---TTHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEEccCCCcHHHH----HHHHHHHHHHhCC-CCeEEEeCC----------CCcCH---HHHHHHHHH
Confidence            3456677778775  4455532 233    7899999999974 456788873          35653   256788999


Q ss_pred             HHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHH
Q 021156          222 FLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYK  301 (316)
Q Consensus       222 ~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~  301 (316)
                      +.+.++..+  -    + -....|++.++++++.+++||.+.+-+.+.+|+.++++.+ .++.+.+--+-  .+|-....
T Consensus       214 l~~~~i~~i--E----q-P~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~-~~d~v~~k~~~--~GGit~~~  283 (377)
T 3my9_A          214 VDAFRPTFI--E----Q-PVPRRHLDAMAGFAAALDTPILADESCFDAVDLMEVVRRQ-AADAISVKIMK--CGGLMKAQ  283 (377)
T ss_dssp             HHTTCCSCE--E----C-CSCTTCHHHHHHHHHHCSSCEEESTTCSSHHHHHHHHHHT-CCSEEECCHHH--HTSHHHHH
T ss_pred             HhhcCCCEE--E----C-CCCccCHHHHHHHHHhCCCCEEECCccCCHHHHHHHHHcC-CCCEEEecccc--cCCHHHHH
Confidence            999887754  1    1 1223389999999998999999999999999999999988 47777776555  55644455


Q ss_pred             HHHHHHHhh
Q 021156          302 DVVAWHAQQ  310 (316)
Q Consensus       302 ~~~~~~~~~  310 (316)
                      ++.++++++
T Consensus       284 ~i~~~a~~~  292 (377)
T 3my9_A          284 SLMAIADTA  292 (377)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHc
Confidence            555555554

>3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A

Probab=96.82  E-value=0.0047  Score=59.21  Aligned_cols=138  Identities=12%  Similarity=-0.054  Sum_probs=97.0

Q ss_pred             HHHHHHHcCCCEEEe---CC---eeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCc-ceecccCHHHH
Q 021156          146 NSLSYIEEGATHVIV---TS---YVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRW-QKFSDVYLDER  218 (316)
Q Consensus       146 ~~~~~l~~Gad~VVi---gt---~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw-~~~~~~~~~e~  218 (316)
                      .++++.+.|...+=+   |.   ....+    .+.++.+.+.+|++ +.+.+|..          .+| ...   +..++
T Consensus       164 ~a~~~~~~G~~~~K~~k~g~~~~~~~~d----~e~v~avR~a~G~d-~~l~vDaN----------~~~~~~~---~A~~~  225 (394)
T 3mkc_A          164 LLEKAKAHNIRAVKVCVPIKADWSTKEV----AYYLRELRGILGHD-TDMMVDYL----------YRFTDWY---EVARL  225 (394)
T ss_dssp             HHHHHHHTTCSEEEEECCTTCCCCHHHH----HHHHHHHHHHHCSS-SEEEEECT----------TCCCCHH---HHHHH
T ss_pred             HHHHHHHcCCCEEEeCccCCCccCHHHH----HHHHHHHHHHhCCC-CeEEEeCC----------CCCCCHH---HHHHH
Confidence            577788899886544   42   22233    78899999999854 55778873          357 321   35678


Q ss_pred             HHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcc
Q 021156          219 VLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNL  298 (316)
Q Consensus       219 a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~  298 (316)
                      ++.+.+.|+..+  -     .-....|++.++++++.+++||.+.+.+.+.+++.++++.+ .++.+.+--+-  .+|-.
T Consensus       226 ~~~L~~~~i~~i--E-----eP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~-~~d~v~~k~~~--~GGit  295 (394)
T 3mkc_A          226 LNSIEDLELYFA--E-----ATLQHDDLSGHAKLVENTRSRICGAEMSTTRFEAEEWITKG-KVHLLQSDYNR--CGGLT  295 (394)
T ss_dssp             HHHTGGGCCSEE--E-----SCSCTTCHHHHHHHHHHCSSCBEECTTCCHHHHHHHHHHTT-CCSEECCCTTT--TTHHH
T ss_pred             HHHhhhcCCeEE--E-----CCCCchhHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcC-CCCeEecCccc--cCCHH
Confidence            888888888754  1     11222389999999998999999999999999999999988 47777766555  55544


Q ss_pred             cHHHHHHHHHhhc
Q 021156          299 AYKDVVAWHAQQE  311 (316)
Q Consensus       299 ~~~~~~~~~~~~~  311 (316)
                      ...++.++++++.
T Consensus       296 ~~~~ia~~A~~~g  308 (394)
T 3mkc_A          296 ELRRITEMATANN  308 (394)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcC
Confidence            4555555555543

>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4

Probab=96.81  E-value=0.0014  Score=60.03  Aligned_cols=73  Identities=21%  Similarity=0.132  Sum_probs=50.3

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecC---Cc----ccHHHHHHHHHh-CCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCee
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGA---DP----LSKAAAIEALHA-YPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYV  164 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda---~~----~~~~~i~~~v~~-~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~  164 (316)
                      ++.+.++...+.+-..+|++-+-+   ..    ......++.+++ .+.|+.+|+||+ .+++++.+..|||-||+||++
T Consensus       161 t~~eri~~i~~~~~gfiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGfGIst~e~~~~~~~~gADgvIVGSAi  240 (271)
T 3nav_A          161 ASDETLRAVAQLGKGYTYLLSRAGVTGAETKANMPVHALLERLQQFDAPPALLGFGISEPAQVKQAIEAGAAGAISGSAV  240 (271)
T ss_dssp             CCHHHHHHHHHHCCSCEEECCCC--------CCHHHHHHHHHHHHTTCCCEEECSSCCSHHHHHHHHHTTCSEEEESHHH
T ss_pred             CCHHHHHHHHHHCCCeEEEEeccCCCCcccCCchhHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEECHHH
Confidence            444566667666555456554533   11    112334455553 679999999998 599999999999999999998


Q ss_pred             ec
Q 021156          165 FN  166 (316)
Q Consensus       165 ~~  166 (316)
                      .+
T Consensus       241 v~  242 (271)
T 3nav_A          241 VK  242 (271)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold, acid sugar dehydratase, D-araninonate, isomera; HET: EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A 3dfh_A 4gis_A 4gir_A 4ggh_A 3gy1_A

Probab=96.81  E-value=0.0076  Score=57.87  Aligned_cols=143  Identities=10%  Similarity=0.006  Sum_probs=97.9

Q ss_pred             HHHHHHHHcCCCEE--EeCCeeecC-----------C---------CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEE
Q 021156          145 DNSLSYIEEGATHV--IVTSYVFNN-----------G---------QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAI  202 (316)
Q Consensus       145 e~~~~~l~~Gad~V--Vigt~~~~~-----------~---------~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v  202 (316)
                      ++++++.+.|...+  =+|......           +         +.+.+.++.+.+.+|+ .+-+.+|+.        
T Consensus       139 ~~a~~~~~~G~~~~K~KvG~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~v~avR~a~G~-d~~l~vDan--------  209 (401)
T 3sbf_A          139 DLVEGFLEKGYKHIRCQLGFYGGVPTDLHTTQNPTEGSYYDQDQYMDNTLTMFKSLREKYGN-QFHILHDVH--------  209 (401)
T ss_dssp             HHHHHHHHTTCCEEEEEESCCCSCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHTT-SSEEEEECT--------
T ss_pred             HHHHHHHHcCCCEEEEeeccCCcccccccccccccccccccchHHHHHHHHHHHHHHHHcCC-CCEEEEECC--------
Confidence            55778888998854  345421100           0         0126778889899985 456778873        


Q ss_pred             EeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCc
Q 021156          203 VTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGR  282 (316)
Q Consensus       203 ~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~  282 (316)
                        .+|...   +..++++.+.+.|+..+  -     .-....|++.++++++.+++||.+.+.+.+.+++.++++.+ .+
T Consensus       210 --~~~~~~---~A~~~~~~L~~~~i~~i--E-----qP~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~-~~  276 (401)
T 3sbf_A          210 --ERLFPN---QAIQFAKEVEQYKPYFI--E-----DILPPNQTEWLDNIRSQSSVSLGLGELFNNPEEWKSLIANR-RI  276 (401)
T ss_dssp             --TCSCHH---HHHHHHHHHGGGCCSCE--E-----CSSCTTCGGGHHHHHTTCCCCEEECTTCCSHHHHHHHHHTT-CC
T ss_pred             --CCCCHH---HHHHHHHHHHhcCCCEE--E-----CCCChhHHHHHHHHHhhCCCCEEeCCccCCHHHHHHHHhcC-CC
Confidence              356532   46678888988887744  1     11223378889999999999999999999999999999998 47


Q ss_pred             CEEEEccchhhccCcccHHHHHHHHHhhc
Q 021156          283 VDVTVGSALDIFGGNLAYKDVVAWHAQQE  311 (316)
Q Consensus       283 ~gVivG~Al~~~~g~~~~~~~~~~~~~~~  311 (316)
                      +.+.+--+-  .+|-....++.++++++.
T Consensus       277 d~v~~k~~~--~GGit~~~kia~~A~~~g  303 (401)
T 3sbf_A          277 DFIRCHVSQ--IGGITPALKLGHLCQNFG  303 (401)
T ss_dssp             SEECCCGGG--GTSHHHHHHHHHHHHHHT
T ss_pred             CEEecCccc--cCCHHHHHHHHHHHHHcC
Confidence            777776666  666555555666665543

>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1

Probab=96.80  E-value=0.003  Score=54.57  Aligned_cols=87  Identities=20%  Similarity=0.170  Sum_probs=58.0

Q ss_pred             cCHHHHHHHHHHcCCCcceEEE-ecCC------cccHHHHHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeee
Q 021156           93 KSAAEFANLYKEDGLTGGHAIM-LGAD------PLSKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVF  165 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvD-Lda~------~~~~~~i~~~v~~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~  165 (316)
                      .+|.++ ....+.|++.+.+-- ..+.      ..+...+.+..+..++|++++|||+.+++.+++++|++.|++||.++
T Consensus       116 ~t~~e~-~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~pvia~GGI~~~nv~~~~~~Ga~gv~vgs~i~  194 (215)
T 1xi3_A          116 YSLEEA-LEAEKKGADYLGAGSVFPTKTKEDARVIGLEGLRKIVESVKIPVVAIGGINKDNAREVLKTGVDGIAVISAVM  194 (215)
T ss_dssp             SSHHHH-HHHHHHTCSEEEEECSSCC----CCCCCHHHHHHHHHHHCSSCEEEESSCCTTTHHHHHTTTCSEEEESHHHH
T ss_pred             CCHHHH-HHHHhcCCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHhCCCCEEEECCcCHHHHHHHHHcCCCEEEEhHHHh
Confidence            367764 445567888654311 1221      12334444444457899999999998899999999999999999988


Q ss_pred             cCCCCCH-HHHHHHHHHh
Q 021156          166 NNGQMDL-ERLKDLVRVV  182 (316)
Q Consensus       166 ~~~~~~~-eli~ei~~~~  182 (316)
                      ..+  ++ +.++++.+.+
T Consensus       195 ~~~--d~~~~~~~~~~~~  210 (215)
T 1xi3_A          195 GAE--DVRKATEELRKIV  210 (215)
T ss_dssp             TSS--SHHHHHHHHHHHH
T ss_pred             CCC--CHHHHHHHHHHHH
Confidence            642  25 4666665544

>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A

Probab=96.80  E-value=0.0058  Score=55.44  Aligned_cols=179  Identities=17%  Similarity=0.083  Sum_probs=102.9

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHhCCCcEEE----ecCC-----C---HHHHHHHHHcCCCEEEe
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAYPGGLQV----GGGI-----N---SDNSLSYIEEGATHVIV  160 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~~~pl~v----GGGI-----r---~e~~~~~l~~Gad~VVi  160 (316)
                      .++..+.+...+.|+..+-+         ++-+.+.+...+.++.+    ++++     .   ..+++.+++.||+-|-+
T Consensus        41 ~di~~~~~~a~~~~~~av~v---------~~~~v~~~~~~~~~liv~~~~~~~~~g~~~~~~~~~~ve~Ai~~Ga~~v~~  111 (263)
T 1w8s_A           41 ADPEYILRLARDAGFDGVVF---------QRGIAEKYYDGSVPLILKLNGKTTLYNGEPVSVANCSVEEAVSLGASAVGY  111 (263)
T ss_dssp             GCHHHHHHHHHHHTCSEEEE---------CHHHHHHHCCSSSCEEEECEECCTTCCSSCCCEESSCHHHHHHTTCSEEEE
T ss_pred             hhHHHHHHHHHhhCCCEEEE---------CHHHHHHhhcCCCcEEEEEeCCCCcCCCCccchHHHHHHHHHHCCCCEEEE
Confidence            57888888888888663321         12222322222344333    4443     1   26799999999997644


Q ss_pred             ----CCeeecCCCCCHHHHHHHH---HHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEe
Q 021156          161 ----TSYVFNNGQMDLERLKDLV---RVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVH  233 (316)
Q Consensus       161 ----gt~~~~~~~~~~eli~ei~---~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvt  233 (316)
                          |+....  + -.+.+.++.   +.+| -.+++....   +|. .+.    ...+.-.....++...+.|++.+- +
T Consensus       112 ~~nig~~~~~--~-~~~~~~~v~~~~~~~~-~~vIi~~~~---~G~-~~~----~~~s~~~i~~a~~~a~~~GAD~vk-t  178 (263)
T 1w8s_A          112 TIYPGSGFEW--K-MFEELARIKRDAVKFD-LPLVVESFP---RGG-KVV----NETAPEIVAYAARIALELGADAMK-I  178 (263)
T ss_dssp             EECTTSTTHH--H-HHHHHHHHHHHHHHHT-CCEEEEECC---CST-TCC----CTTCHHHHHHHHHHHHHHTCSEEE-E
T ss_pred             EEecCCcCHH--H-HHHHHHHHHHHHHHcC-CeEEEEeeC---CCC-ccc----cCCCHHHHHHHHHHHHHcCCCEEE-E
Confidence                321110  0 023333333   3444 234444322   231 110    000111233336788899999754 4


Q ss_pred             ecCCccccCCCCHHHHHHHhhcCCC-cEEEEeCCC--CHHHHHHHH----HhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156          234 GVDVEGKKLGIDDELVALLGKYSPI-PVTYAGGVT--TMADLEKIK----VAGIGRVDVTVGSALDIFGGNLAYKDVVA  305 (316)
Q Consensus       234 di~~dG~~~G~d~eli~~l~~~~~i-PVIasGGI~--s~eDi~~l~----~~G~g~~gVivG~Al~~~~g~~~~~~~~~  305 (316)
                      ...       .+.+.++++++.+++ ||.++||++  +.+++.+..    +.|  ++|+.+|+++  +..+ ++.++.+
T Consensus       179 ~~~-------~~~e~~~~~~~~~~~~pV~asGGi~~~~~~~~l~~i~~~~~aG--A~GvsvgraI--~~~~-dp~~~~~  245 (263)
T 1w8s_A          179 KYT-------GDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAG--ALGIAVGRNV--WQRR-DALKFAR  245 (263)
T ss_dssp             ECC-------SSHHHHHHHHHHTTTSCEEEECCSCCSSHHHHHHHHHHHHHTT--CCEEEESHHH--HTST-THHHHHH
T ss_pred             cCC-------CCHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHHcC--CeEEEEehhh--cCCc-CHHHHHH
Confidence            321       267889999877777 999999999  889887776    777  8999999999  7654 3344433

>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*

Probab=96.80  E-value=0.0028  Score=59.62  Aligned_cols=73  Identities=15%  Similarity=0.069  Sum_probs=54.0

Q ss_pred             CHHHHHHHHHHcCCCcceEEE---------------------ecCCcccHHHHHHHHHhC-CCcEEEecCCC-HHHHHHH
Q 021156           94 SAAEFANLYKEDGLTGGHAIM---------------------LGADPLSKAAAIEALHAY-PGGLQVGGGIN-SDNSLSY  150 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvD---------------------Lda~~~~~~~i~~~v~~~-~~pl~vGGGIr-~e~~~~~  150 (316)
                      ++ +.|+...++|++.+.+..                     ++.+......+.++.+.+ .+|++..|||+ .+|+.++
T Consensus       191 ~~-~~a~~a~~~Gad~I~v~~~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l~~v~~~~~~ipvia~GGI~~~~d~~k~  269 (349)
T 1p0k_A          191 SK-ASAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEFPASTMIASGGLQDALDVAKA  269 (349)
T ss_dssp             CH-HHHHHHHHHTCSEEEEEC---------------CCGGGGTTCSCCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHH
T ss_pred             CH-HHHHHHHHcCCCEEEEcCCCCcchhhHHHhhcccchhhhhccCccHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHH
Confidence            44 578888899999988852                     122222233344444455 79999999998 5999999


Q ss_pred             HHcCCCEEEeCCeeecC
Q 021156          151 IEEGATHVIVTSYVFNN  167 (316)
Q Consensus       151 l~~Gad~VVigt~~~~~  167 (316)
                      +.+|||.|.+|+.+...
T Consensus       270 l~~GAd~V~iG~~~l~~  286 (349)
T 1p0k_A          270 IALGASCTGMAGHFLKA  286 (349)
T ss_dssp             HHTTCSEEEECHHHHHH
T ss_pred             HHcCCCEEEEcHHHHHH
Confidence            99999999999988763

>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...

Probab=96.78  E-value=0.0024  Score=60.77  Aligned_cols=82  Identities=13%  Similarity=0.117  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHcCCCcceEEEec--CCcccHHHHHHHH-HhCCCcEEEecCCCHHHHHHHHHcC-CCEEEeCCeeecCCCC
Q 021156           95 AAEFANLYKEDGLTGGHAIMLG--ADPLSKAAAIEAL-HAYPGGLQVGGGINSDNSLSYIEEG-ATHVIVTSYVFNNGQM  170 (316)
Q Consensus        95 p~e~a~~~~~~G~~~l~lvDLd--a~~~~~~~i~~~v-~~~~~pl~vGGGIr~e~~~~~l~~G-ad~VVigt~~~~~~~~  170 (316)
                      ..++|+.++++|++.+|+..-.  ..........+.+ +.+++|++..|||+.++++++++.| ||.|.+|..++.|   
T Consensus       253 ~~~~a~~l~~~G~d~i~v~~~~~~~~~~~~~~~~~~v~~~~~iPvi~~Ggit~~~a~~~l~~g~aD~V~~gR~~l~~---  329 (364)
T 1vyr_A          253 ALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQKVRERFHGVIIGAGAYTAEKAEDLIGKGLIDAVAFGRDYIAN---  329 (364)
T ss_dssp             HHHHHHHHHHTTCSEEEEECCBTTBCCCCCHHHHHHHHHHCCSEEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHC---
T ss_pred             HHHHHHHHHHhCCCEEEEecCcccCCCcccHHHHHHHHHHCCCCEEEECCcCHHHHHHHHHCCCccEEEECHHHHhC---
Confidence            4567999999999988876421  1111122333444 4689999999999769999999998 9999999999998   


Q ss_pred             CHHHHHHHHH
Q 021156          171 DLERLKDLVR  180 (316)
Q Consensus       171 ~~eli~ei~~  180 (316)
                       |+++.++.+
T Consensus       330 -P~~~~~~~~  338 (364)
T 1vyr_A          330 -PDLVARLQK  338 (364)
T ss_dssp             -TTHHHHHHH
T ss_pred             -hhHHHHHHc
Confidence             999999876

>3mwc_A Mandelate racemase/muconate lactonizing protein; enolase, structural genomics, protein structure initiative, nysgrc; 1.80A {Kosmotoga olearia}

Probab=96.78  E-value=0.01  Score=56.98  Aligned_cols=138  Identities=14%  Similarity=0.017  Sum_probs=98.0

Q ss_pred             HHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHH
Q 021156          145 DNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLA  224 (316)
Q Consensus       145 e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~  224 (316)
                      ++++++.+.|...+=+--....    +.+.++.+.+.+|+ .+.+.+|+.          .+|...   + .++++.+.+
T Consensus       169 ~~a~~~~~~G~~~iKlKv~~~~----d~~~v~avR~a~G~-~~~L~vDaN----------~~w~~~---~-~~~~~~l~~  229 (400)
T 3mwc_A          169 HQVEESLQEGYRRIKIKIKPGW----DVEPLQETRRAVGD-HFPLWTDAN----------SSFELD---Q-WETFKAMDA  229 (400)
T ss_dssp             HHHHHHHHHTCSCEEEECBTTB----SHHHHHHHHHHHCT-TSCEEEECT----------TCCCGG---G-HHHHHHHGG
T ss_pred             HHHHHHHHcCCCEEEEEeCcch----HHHHHHHHHHhcCC-CCEEEEeCC----------CCCCHH---H-HHHHHHHHh
Confidence            3567778889775433221223    48999999999985 455778873          356532   3 578889988


Q ss_pred             cCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHH
Q 021156          225 SYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVV  304 (316)
Q Consensus       225 ~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~  304 (316)
                      .++..+  -    + -...-|++.++++++.+++||.+..-+.+.+|+.++++.+ .++.+.+--+-  .+|-....++.
T Consensus       230 ~~i~~i--E----q-P~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~~~~~-~~d~v~~k~~~--~GGit~~~~ia  299 (400)
T 3mwc_A          230 AKCLFH--E----Q-PLHYEALLDLKELGERIETPICLDESLISSRVAEFVAKLG-ISNIWNIKIQR--VGGLLEAIKIY  299 (400)
T ss_dssp             GCCSCE--E----S-CSCTTCHHHHHHHHHHSSSCEEESTTCCSHHHHHHHHHTT-CCSEEEECHHH--HTSHHHHHHHH
T ss_pred             cCCCEE--e----C-CCChhhHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHhcC-CCCEEEEcchh--hCCHHHHHHHH
Confidence            887754  1    1 1222389999999998999999999999999999999988 47777777666  66655555666


Q ss_pred             HHHHhhc
Q 021156          305 AWHAQQE  311 (316)
Q Consensus       305 ~~~~~~~  311 (316)
                      ++++++.
T Consensus       300 ~~A~~~g  306 (400)
T 3mwc_A          300 KIATDNG  306 (400)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHcC
Confidence            6665543

>4e5t_A Mandelate racemase / muconate lactonizing enzyme, terminal domain protein; aldolase, structural genomics, biology; 2.90A {Labrenzia alexandrii}

Probab=96.77  E-value=0.0092  Score=57.38  Aligned_cols=138  Identities=16%  Similarity=0.127  Sum_probs=97.1

Q ss_pred             HHHHHHHcCCCEEEe--CCe-------------eecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCccee
Q 021156          146 NSLSYIEEGATHVIV--TSY-------------VFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKF  210 (316)
Q Consensus       146 ~~~~~l~~Gad~VVi--gt~-------------~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~  210 (316)
                      +++++.+.|...+=+  |..             ...    +.+.++.+.+.+|+ .+-+.+|+.          .+|...
T Consensus       158 ~a~~~~~~G~~~~KlK~g~~~~~~~g~~~~~~~~~~----d~~~v~avR~a~G~-d~~l~vDan----------~~~~~~  222 (404)
T 4e5t_A          158 AAAKAVDQGFTAVKFDPAGAYTIYDGHQPSLEDLER----SEAFCKQIRAAVGT-KADLLFGTH----------GQFTVS  222 (404)
T ss_dssp             HHHHHHHHTCSEEEECCSCCCBTTCSBCCCHHHHHH----HHHHHHHHHHHHGG-GSEEEECCC----------SCBCHH
T ss_pred             HHHHHHHcCCCEEeeCCCCCCcccccccccHHHHHH----HHHHHHHHHHHcCC-CCeEEEeCC----------CCcCHH
Confidence            466778889886654  321             112    36889999999984 456778873          356532


Q ss_pred             cccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccc
Q 021156          211 SDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSA  290 (316)
Q Consensus       211 ~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~A  290 (316)
                         +..++++.+.+.|+..+  -.     -....|++.++++++.+++||.+.+.+.+.+++.++++.+ .++.+.+--+
T Consensus       223 ---~A~~~~~~l~~~~i~~i--Ee-----P~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~-a~d~v~~d~~  291 (404)
T 4e5t_A          223 ---GAKRLARRLEAYDPLWF--EE-----PIPPEKPEDMAEVARYTSIPVATGERLCTKYEFSRVLETG-AASILQMNLG  291 (404)
T ss_dssp             ---HHHHHHHHHGGGCCSEE--EC-----CSCTTCHHHHHHHHHHCSSCEEECTTCCHHHHHHHHHHHT-CCSEECCCTT
T ss_pred             ---HHHHHHHHHhhcCCcEE--EC-----CCCcccHHHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHhC-CCCEEecCcc
Confidence               45678889999888754  11     1223389999999999999999999999999999999988 3676666655


Q ss_pred             hhhccCcccHHHHHHHHHhhc
Q 021156          291 LDIFGGNLAYKDVVAWHAQQE  311 (316)
Q Consensus       291 l~~~~g~~~~~~~~~~~~~~~  311 (316)
                      -  .+|-....++.++++++.
T Consensus       292 ~--~GGit~~~~ia~~A~~~g  310 (404)
T 4e5t_A          292 R--VGGLLEAKKIAAMAECHS  310 (404)
T ss_dssp             T--SSCHHHHHHHHHHHHHTT
T ss_pred             c--cCCHHHHHHHHHHHHHcC
Confidence            5  556555555666665543

>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1

Probab=96.75  E-value=0.0068  Score=56.06  Aligned_cols=90  Identities=14%  Similarity=0.141  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHH
Q 021156          172 LERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVAL  251 (316)
Q Consensus       172 ~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~  251 (316)
                      .+-++.+.+.++..+|.+.+|.                     + +.+++..+.|++.|.+..         .+.+.+++
T Consensus       196 ~~ai~~~r~~~~~~kI~vev~t---------------------l-ee~~eA~~aGaD~I~ld~---------~~~e~l~~  244 (296)
T 1qap_A          196 RQAVEKAFWLHPDVPVEVEVEN---------------------L-DELDDALKAGADIIMLDN---------FNTDQMRE  244 (296)
T ss_dssp             HHHHHHHHHHSTTSCEEEEESS---------------------H-HHHHHHHHTTCSEEEESS---------CCHHHHHH
T ss_pred             HHHHHHHHHhCCCCcEEEEeCC---------------------H-HHHHHHHHcCCCEEEECC---------CCHHHHHH
Confidence            3456666666653255555542                     2 556777788999876643         55677777


Q ss_pred             HhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCc
Q 021156          252 LGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGN  297 (316)
Q Consensus       252 l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~  297 (316)
                      +.+.+  ++|+.++||| +.+.+.++.+.|  ++.+.+|+++  |.-+
T Consensus       245 ~v~~~~~~~~I~ASGGI-t~~~i~~~a~~G--vD~isvGsli--~~a~  287 (296)
T 1qap_A          245 AVKRVNGQARLEVSGNV-TAETLREFAETG--VDFISVGALT--KHVR  287 (296)
T ss_dssp             HHHTTCTTCCEEECCCS-CHHHHHHHHHTT--CSEEECSHHH--HEEE
T ss_pred             HHHHhCCCCeEEEECCC-CHHHHHHHHHcC--CCEEEEeHHH--cCCC
Confidence            76655  5899999999 999999999998  9999999977  6433

>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1

Probab=96.74  E-value=0.0016  Score=63.58  Aligned_cols=85  Identities=19%  Similarity=0.137  Sum_probs=63.5

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecC------------Cc----cc---HHHHHHHHH-hC--CCcEEEecCCCH-HHHHHH
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGA------------DP----LS---KAAAIEALH-AY--PGGLQVGGGINS-DNSLSY  150 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda------------~~----~~---~~~i~~~v~-~~--~~pl~vGGGIr~-e~~~~~  150 (316)
                      +..++|+...++|++++.+..=..            +.    ..   ...++..++ .+  .+||+..|||++ +|+.+.
T Consensus       312 d~~~iA~~~~~aGaDgI~v~ntt~~~~d~~~~~~~~GGlSG~~~~~~sl~~i~~v~~~v~~~iPVIg~GGI~s~~DA~e~  391 (443)
T 1tv5_A          312 QKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEK  391 (443)
T ss_dssp             HHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCEEEEECCCcccccccccccccCCcCCCcchHHHHHHHHHHHHHcCCCCcEEEECCCCCHHHHHHH
Confidence            577899999999999887765311            00    00   123344443 56  799999999985 999999


Q ss_pred             HHcCCCEEEeCCeeec-CCCCCHHHHHHHHHHh
Q 021156          151 IEEGATHVIVTSYVFN-NGQMDLERLKDLVRVV  182 (316)
Q Consensus       151 l~~Gad~VVigt~~~~-~~~~~~eli~ei~~~~  182 (316)
                      +.+|||.|-+||.++. +    |.++.++.+..
T Consensus       392 l~aGAd~Vqigrall~~g----P~l~~~i~~~l  420 (443)
T 1tv5_A          392 IEAGASVCQLYSCLVFNG----MKSAVQIKREL  420 (443)
T ss_dssp             HHTTEEEEEESHHHHHHG----GGHHHHHHHHH
T ss_pred             HHcCCCEEEEcHHHHhcC----hHHHHHHHHHH
Confidence            9999999999999775 5    88888877654

>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0

Probab=96.74  E-value=0.0024  Score=56.96  Aligned_cols=81  Identities=12%  Similarity=-0.133  Sum_probs=55.0

Q ss_pred             HHHHHHHHcCCCcce--EEEecCC----cccHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCC
Q 021156           97 EFANLYKEDGLTGGH--AIMLGAD----PLSKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQ  169 (316)
Q Consensus        97 e~a~~~~~~G~~~l~--lvDLda~----~~~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~  169 (316)
                      +.++...+.|++.+-  +..+...    ..+...+.+..+. ++|++..|||+ .+++.+++++||+-|++|+++.+-  
T Consensus       140 eea~~a~~~Gad~Ig~~~~g~t~~~~~~~~~~~~i~~l~~~-~ipvIA~GGI~t~~d~~~~~~~GadgV~VGsal~~p--  216 (232)
T 3igs_A          140 DDGLACQRLGADIIGTTMSGYTTPDTPEEPDLPLVKALHDA-GCRVIAEGRYNSPALAAEAIRYGAWAVTVGSAITRL--  216 (232)
T ss_dssp             HHHHHHHHTTCSEEECTTTTSSSSSCCSSCCHHHHHHHHHT-TCCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHCH--
T ss_pred             HHHHHHHhCCCCEEEEcCccCCCCCCCCCCCHHHHHHHHhc-CCcEEEECCCCCHHHHHHHHHcCCCEEEEehHhcCH--
Confidence            466777788988652  1222211    2344444444445 89999999998 699999999999999999887752  


Q ss_pred             CCHHHHHHHHHHh
Q 021156          170 MDLERLKDLVRVV  182 (316)
Q Consensus       170 ~~~eli~ei~~~~  182 (316)
                        .+..+++.+.+
T Consensus       217 --~~~~~~~~~~i  227 (232)
T 3igs_A          217 --EHICGWYNDAL  227 (232)
T ss_dssp             --HHHHHHHHHHH
T ss_pred             --HHHHHHHHHHH
Confidence              34455554443

>3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A

Probab=96.73  E-value=0.0088  Score=58.12  Aligned_cols=142  Identities=14%  Similarity=0.069  Sum_probs=96.2

Q ss_pred             HHHHHHHHcCCCEEEeCCee--e---------cCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceeccc
Q 021156          145 DNSLSYIEEGATHVIVTSYV--F---------NNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDV  213 (316)
Q Consensus       145 e~~~~~l~~Gad~VVigt~~--~---------~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~  213 (316)
                      ++++++.+.|...+=+....  .         ++.+.+.+.++.+.+.+|+ .+-+.+|+.          .+|...   
T Consensus       152 ~~a~~~~~~Gf~~iKlk~g~~~~~~~G~~~~~~~~~~d~e~v~avR~avG~-d~~L~vDan----------~~~t~~---  217 (433)
T 3rcy_A          152 ESAADCVARGYTAVKFDPAGPYTLRGGHMPAMTDISLSVEFCRKIRAAVGD-KADLLFGTH----------GQFTTA---  217 (433)
T ss_dssp             HHHHHHHHTTCSEEEECCSCCCBTTCCBCCCHHHHHHHHHHHHHHHHHHTT-SSEEEECCC----------SCBCHH---
T ss_pred             HHHHHHHHcCCCEEEEcCCCCcccccCCCcchhhHHHHHHHHHHHHHHhCC-CCeEEEeCC----------CCCCHH---
Confidence            45677888998866552210  0         0001136789999999985 456778873          356432   


Q ss_pred             CHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhh
Q 021156          214 YLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDI  293 (316)
Q Consensus       214 ~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~  293 (316)
                      +..++++.+++.|+..+  -.     -...-|++.++++++.+++||.+.+.+.+..++.++++.+ .++.+.+--+-  
T Consensus       218 ~A~~~~~~Le~~~i~~i--Ee-----P~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~g-~~D~v~~d~~~--  287 (433)
T 3rcy_A          218 GAIRLGQAIEPYSPLWY--EE-----PVPPDNVGAMAQVARAVRIPVATGERLTTKAEFAPVLREG-AAAILQPALGR--  287 (433)
T ss_dssp             HHHHHHHHHGGGCCSEE--EC-----CSCTTCHHHHHHHHHHSSSCEEECTTCCSHHHHHHHHHTT-CCSEECCCHHH--
T ss_pred             HHHHHHHHhhhcCCCEE--EC-----CCChhhHHHHHHHHhccCCCEEecCCCCCHHHHHHHHHcC-CCCEEEeCchh--
Confidence            45678888988887754  21     1122389999999999999999999999999999999988 36666665544  


Q ss_pred             ccCcccHHHHHHHHHhh
Q 021156          294 FGGNLAYKDVVAWHAQQ  310 (316)
Q Consensus       294 ~~g~~~~~~~~~~~~~~  310 (316)
                      .+|-....++.+++.++
T Consensus       288 ~GGit~~~kia~lA~~~  304 (433)
T 3rcy_A          288 AGGIWEMKKVAAMAEVY  304 (433)
T ss_dssp             HTHHHHHHHHHHHHHTT
T ss_pred             cCCHHHHHHHHHHHHHc
Confidence            55544455555555554

>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A

Probab=96.72  E-value=0.003  Score=54.49  Aligned_cols=87  Identities=11%  Similarity=0.090  Sum_probs=63.6

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEec--CC--cccHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecC
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLG--AD--PLSKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNN  167 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLd--a~--~~~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~  167 (316)
                      .++.++++.....++..+.+.+++  +.  +.....+.+.....++|+++.||++ .+++.++++.||+-+++|++++.+
T Consensus       130 ~~~~~~i~~~~~~~~~~vli~~~~~~g~~~g~~~~~i~~~~~~~~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~~~  209 (237)
T 3cwo_X          130 ILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFR  209 (237)
T ss_dssp             EEHHHHHHHHHHHTCSEEEEEETTTTTCCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHHTT
T ss_pred             cCHHHHHHHHhhcCCCeEEEEecCCCCccccccHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHHcC
Confidence            368899999999998888888864  22  1233334443345789999999998 599999999999999999999775


Q ss_pred             CCCCHHHHHHHHH
Q 021156          168 GQMDLERLKDLVR  180 (316)
Q Consensus       168 ~~~~~eli~ei~~  180 (316)
                       ..+++.+.+..+
T Consensus       210 -~~~~~~~~~~l~  221 (237)
T 3cwo_X          210 -EIDVRELKEYLK  221 (237)
T ss_dssp             -SSCHHHHHHHHH
T ss_pred             -CCCHHHHHHHHH
Confidence             233444444333

>1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A*

Probab=96.71  E-value=0.013  Score=55.99  Aligned_cols=139  Identities=16%  Similarity=0.115  Sum_probs=97.8

Q ss_pred             HHHHHHHHcCCCEEEe--CC-eeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHH
Q 021156          145 DNSLSYIEEGATHVIV--TS-YVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLD  221 (316)
Q Consensus       145 e~~~~~l~~Gad~VVi--gt-~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~  221 (316)
                      +.++++.+.|.+.+=+  |. ....    +.+.++.+.+.+|+ .+-+.+|+.          .+|...   +..++++.
T Consensus       171 ~~a~~~~~~Gf~~iKik~g~~~~~~----~~e~v~avr~a~g~-~~~l~vDan----------~~~~~~---~a~~~~~~  232 (392)
T 1tzz_A          171 GEMRGYLDRGYNVVKMKIGGAPIEE----DRMRIEAVLEEIGK-DAQLAVDAN----------GRFNLE---TGIAYAKM  232 (392)
T ss_dssp             HHHHHHHTTTCSEEEEECSSSCHHH----HHHHHHHHHHHHTT-TCEEEEECT----------TCCCHH---HHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEEcCCCCCHHH----HHHHHHHHHHhcCC-CCeEEEECC----------CCCCHH---HHHHHHHH
Confidence            4467778889886543  43 1122    37889999888975 456778873          256431   35678888


Q ss_pred             HHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhC----CCcCEEEEccchhhccCc
Q 021156          222 FLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAG----IGRVDVTVGSALDIFGGN  297 (316)
Q Consensus       222 ~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G----~g~~gVivG~Al~~~~g~  297 (316)
                      +.+.++..+  -     .-....|++.++++++.+++||.+.+.+.+.++++++++.+    . ++.+.+--+-  .+|-
T Consensus       233 l~~~~i~~i--E-----qP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~~~~-~d~v~ik~~~--~GGi  302 (392)
T 1tzz_A          233 LRDYPLFWY--E-----EVGDPLDYALQAALAEFYPGPMATGENLFSHQDARNLLRYGGMRPD-RDWLQFDCAL--SYGL  302 (392)
T ss_dssp             HTTSCCSEE--E-----CCSCTTCHHHHHHHTTTCCSCEEECTTCCSHHHHHHHHHHSCCCTT-TCEECCCTTT--TTCH
T ss_pred             HHHcCCCee--c-----CCCChhhHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHcCCCccC-CcEEEECccc--cCCH
Confidence            888888743  1     11223489999999998999999999999999999999986    4 7778877666  5564


Q ss_pred             ccHHHHHHHHHhhc
Q 021156          298 LAYKDVVAWHAQQE  311 (316)
Q Consensus       298 ~~~~~~~~~~~~~~  311 (316)
                      ....++.++++++.
T Consensus       303 t~~~~i~~~A~~~g  316 (392)
T 1tzz_A          303 CEYQRTLEVLKTHG  316 (392)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHCC
Confidence            45555666665543

>3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica}

Probab=96.71  E-value=0.0074  Score=57.80  Aligned_cols=138  Identities=14%  Similarity=0.065  Sum_probs=96.6

Q ss_pred             HHHHHHHHcCCCE--EEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH
Q 021156          145 DNSLSYIEEGATH--VIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF  222 (316)
Q Consensus       145 e~~~~~l~~Gad~--VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~  222 (316)
                      +.++++.+.|...  +=+|.....+    .+.++.+.+.+|++ +.+.+|+.          .+|...   +..++++.+
T Consensus       161 ~~a~~~~~~G~~~iKlK~g~~~~~d----~~~v~avR~a~g~~-~~l~vDaN----------~~~~~~---~A~~~~~~L  222 (392)
T 3ddm_A          161 DVVARKAAEGYRAFKLKVGFDDARD----VRNALHVRELLGAA-TPLMADAN----------QGWDLP---RARQMAQRL  222 (392)
T ss_dssp             HHHHHHHHHTCCCEEEECSSCHHHH----HHHHHHHHHHHCSS-SCEEEECT----------TCCCHH---HHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEEecCCCHHHH----HHHHHHHHHhcCCC-ceEEEeCC----------CCCCHH---HHHHHHHHH
Confidence            6788999999774  4456533333    78899999999854 45678873          356532   466788889


Q ss_pred             HHcCCCEEEEeecCCccccCCCC-HHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHH
Q 021156          223 LASYADEFLVHGVDVEGKKLGID-DELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYK  301 (316)
Q Consensus       223 ~~~Ga~~ilvtdi~~dG~~~G~d-~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~  301 (316)
                      .+.|+..+  -    + -....| ++.++++++.+++||.+.+.+.+.+|+.++++.+ .++.+.+--+-  .+|-....
T Consensus       223 ~~~~i~~i--E----e-P~~~~d~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~-a~d~v~~k~~~--~GGit~~~  292 (392)
T 3ddm_A          223 GPAQLDWL--E----E-PLRADRPAAEWAELAQAAPMPLAGGENIAGVAAFETALAAR-SLRVMQPDLAK--WGGFSGCL  292 (392)
T ss_dssp             GGGCCSEE--E----C-CSCTTSCHHHHHHHHHHCSSCEEECTTCCSHHHHHHHHHHT-CEEEECCCTTT--TTHHHHHH
T ss_pred             HHhCCCEE--E----C-CCCccchHHHHHHHHHhcCCCEEeCCCCCCHHHHHHHHHcC-CCCEEEeCcch--hCCHHHHH
Confidence            88888754  1    1 122236 9999999998999999999999999999999987 36666655444  44433445


Q ss_pred             HHHHHHHhh
Q 021156          302 DVVAWHAQQ  310 (316)
Q Consensus       302 ~~~~~~~~~  310 (316)
                      ++.++++++
T Consensus       293 ~ia~~A~~~  301 (392)
T 3ddm_A          293 PVARAVVAA  301 (392)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHc
Confidence            555555554

>2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti}

Probab=96.69  E-value=0.018  Score=54.88  Aligned_cols=133  Identities=11%  Similarity=-0.039  Sum_probs=91.1

Q ss_pred             HHHHHHHHcCCCEEEe--CC-eeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHH
Q 021156          145 DNSLSYIEEGATHVIV--TS-YVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLD  221 (316)
Q Consensus       145 e~~~~~l~~Gad~VVi--gt-~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~  221 (316)
                      +.++++.+.|.+.+=+  |. ....    +.+.++.+.+.+|+ .+.+.+|+.          .+|...   +..++++.
T Consensus       151 ~~a~~~~~~Gf~~vKik~g~~~~~~----~~e~v~avR~a~G~-~~~l~vDan----------~~~~~~---~a~~~~~~  212 (389)
T 2oz8_A          151 SLFSHAASIGYSAFKIKVGHRDFDR----DLRRLELLKTCVPA-GSKVMIDPN----------EAWTSK---EALTKLVA  212 (389)
T ss_dssp             HHHHHHHHTTCCEEEEECCCSSHHH----HHHHHHHHHTTSCT-TCEEEEECT----------TCBCHH---HHHHHHHH
T ss_pred             HHHHHHHHhCCCEEEEccCCCCHHH----HHHHHHHHHHhhCC-CCeEEEECC----------CCCCHH---HHHHHHHH
Confidence            4467778899887554  43 1122    36888888888874 456778873          256432   36688888


Q ss_pred             HHH--cCCCEEEEeecCCccccCCCCHHHHHHHhhcC-CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcc
Q 021156          222 FLA--SYADEFLVHGVDVEGKKLGIDDELVALLGKYS-PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNL  298 (316)
Q Consensus       222 ~~~--~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~-~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~  298 (316)
                      +.+  .++..+  -     .-....|++.++++++.+ ++||.+.+.+ +.+++.++++.+ .++.+.+.      +|-.
T Consensus       213 l~~~g~~i~~i--E-----qP~~~~~~~~~~~l~~~~~~iPIa~dE~~-~~~~~~~~i~~~-~~d~v~ik------GGit  277 (389)
T 2oz8_A          213 IREAGHDLLWV--E-----DPILRHDHDGLRTLRHAVTWTQINSGEYL-DLQGKRLLLEAH-AADILNVH------GQVT  277 (389)
T ss_dssp             HHHTTCCCSEE--E-----SCBCTTCHHHHHHHHHHCCSSEEEECTTC-CHHHHHHHHHTT-CCSEEEEC------SCHH
T ss_pred             HHhcCCCceEE--e-----CCCCCcCHHHHHHHHhhCCCCCEEeCCCC-CHHHHHHHHHcC-CCCEEEEC------cCHH
Confidence            988  565532  1     112234899999999988 9999999999 999999999998 48888887      2322


Q ss_pred             cHHHHHHHHHhh
Q 021156          299 AYKDVVAWHAQQ  310 (316)
Q Consensus       299 ~~~~~~~~~~~~  310 (316)
                      ...++.++++++
T Consensus       278 ~a~~i~~~A~~~  289 (389)
T 2oz8_A          278 DVMRIGWLAAEL  289 (389)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc
Confidence            344455555543

>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A

Probab=96.68  E-value=0.0066  Score=55.04  Aligned_cols=84  Identities=15%  Similarity=0.148  Sum_probs=55.6

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecC---C--cccHHHHHHHHH-hCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeec
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGA---D--PLSKAAAIEALH-AYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda---~--~~~~~~i~~~v~-~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      ++. .++...+.|++.+  +-+.+   .  .......++.++ ..++|+.++|||+ .+++.+++++|||-|++||+..+
T Consensus       136 ~~~-~a~~~~~~gad~v--~~~~~~~Gt~~~~~~~~~l~~i~~~~~iPviv~gGI~t~eda~~~~~~GAdgViVGSAi~~  212 (264)
T 1xm3_A          136 DVV-LARKLEELGVHAI--MPGASPIGSGQGILNPLNLSFIIEQAKVPVIVDAGIGSPKDAAYAMELGADGVLLNTAVSG  212 (264)
T ss_dssp             CHH-HHHHHHHHTCSCB--EECSSSTTCCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred             CHH-HHHHHHHhCCCEE--EECCcccCCCCCCCCHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHcCCCEEEEcHHHhC
Confidence            454 5666777777755  33221   1  112234445554 5789999999998 69999999999999999999875


Q ss_pred             CCCCCH-HHHHHHHHHh
Q 021156          167 NGQMDL-ERLKDLVRVV  182 (316)
Q Consensus       167 ~~~~~~-eli~ei~~~~  182 (316)
                      ..  +| +.++++.+.+
T Consensus       213 a~--dp~~~~~~l~~~v  227 (264)
T 1xm3_A          213 AD--DPVKMARAMKLAV  227 (264)
T ss_dssp             SS--SHHHHHHHHHHHH
T ss_pred             CC--CHHHHHHHHHHHH
Confidence            31  13 4455555443

>3gd6_A Muconate cycloisomerase; structural genomics, NYSGXRC, target 9375A, divergent enolase, lyase, PSI-2; 1.60A {Oceanobacillus iheyensis HTE831} PDB: 2oqy_A 3es8_A 3es7_A 3fyy_A 3hpf_A*

Probab=96.67  E-value=0.017  Score=55.26  Aligned_cols=137  Identities=11%  Similarity=0.028  Sum_probs=97.1

Q ss_pred             HHHHHHHHcCCCEE--EeCCeeecCCCCCHHHHHHHHHHhcCceEEEe-eeeeecCCeeEEEeCCcceecccCHHHHHHH
Q 021156          145 DNSLSYIEEGATHV--IVTSYVFNNGQMDLERLKDLVRVVGKQRLVLD-LSCRKKDGKYAIVTDRWQKFSDVYLDERVLD  221 (316)
Q Consensus       145 e~~~~~l~~Gad~V--Vigt~~~~~~~~~~eli~ei~~~~G~~~Ivvs-lD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~  221 (316)
                      ++++++.+.|...+  =+|.....+    .+.++.+.+.+|+ .+-+. +|+.          .+|...   +..++++.
T Consensus       148 ~~a~~~~~~G~~~~KiKvG~~~~~d----~~~v~avR~a~g~-~~~l~~vDan----------~~~~~~---~A~~~~~~  209 (391)
T 3gd6_A          148 DVVRQKLEQGFDVFRLYVGKNLDAD----EEFLSRVKEEFGS-RVRIKSYDFS----------HLLNWK---DAHRAIKR  209 (391)
T ss_dssp             HHHHHHHHTTCCEEEEECSSCHHHH----HHHHHHHHHHHGG-GCEEEEEECT----------TCSCHH---HHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEEeeCCCHHHH----HHHHHHHHHHcCC-CCcEEEecCC----------CCcCHH---HHHHHHHH
Confidence            34677788898754  456533343    7889999999984 45566 8873          356432   35678888


Q ss_pred             HHHcCC--CEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCccc
Q 021156          222 FLASYA--DEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLA  299 (316)
Q Consensus       222 ~~~~Ga--~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~  299 (316)
                      +.+.|+  ..+  -.     -....|++.++++++.+++||  ...+.+.+++.++++.+ .++.+.+--+-  .+|-..
T Consensus       210 l~~~~i~~~~i--Eq-----P~~~~d~~~~~~l~~~~~iPI--dE~~~~~~~~~~~~~~~-~~d~v~~k~~~--~GGit~  277 (391)
T 3gd6_A          210 LTKYDLGLEMI--ES-----PAPRNDFDGLYQLRLKTDYPI--SEHVWSFKQQQEMIKKD-AIDIFNISPVF--IGGLTS  277 (391)
T ss_dssp             HTTCCSSCCEE--EC-----CSCTTCHHHHHHHHHHCSSCE--EEECCCHHHHHHHHHHT-CCSEEEECHHH--HTSHHH
T ss_pred             HHhcCCCccee--cC-----CCChhhHHHHHHHHHHcCCCc--CCCCCCHHHHHHHHHcC-CCCEEEECchh--cCCHHH
Confidence            888887  533  21     112238999999999899999  88899999999999988 47888887777  667555


Q ss_pred             HHHHHHHHHhhc
Q 021156          300 YKDVVAWHAQQE  311 (316)
Q Consensus       300 ~~~~~~~~~~~~  311 (316)
                      ..++.++++++.
T Consensus       278 ~~~ia~~A~~~g  289 (391)
T 3gd6_A          278 AKKAAYAAEVAS  289 (391)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcC
Confidence            666666666543

>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*

Probab=96.67  E-value=0.0026  Score=58.15  Aligned_cols=72  Identities=14%  Similarity=0.013  Sum_probs=46.3

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecC---Cc----ccHHHHHHHHHh-CCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCee
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGA---DP----LSKAAAIEALHA-YPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYV  164 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda---~~----~~~~~i~~~v~~-~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~  164 (316)
                      ++.+-++.+.+.+...++++-+.+   ..    ......++.+++ .++|+.+||||+ .|+++++  .|||-||+||+.
T Consensus       155 s~~eri~~ia~~~~gfiy~vs~~G~TG~~~~~~~~~~~~v~~vr~~~~~Pv~vGfGI~t~e~a~~~--~~ADgVIVGSAi  232 (271)
T 1ujp_A          155 STDARIATVVRHATGFVYAVSVTGVTGMRERLPEEVKDLVRRIKARTALPVAVGFGVSGKATAAQA--AVADGVVVGSAL  232 (271)
T ss_dssp             CCHHHHHHHHTTCCSCEEEECC------------CCHHHHHHHHTTCCSCEEEESCCCSHHHHHHH--TTSSEEEECHHH
T ss_pred             CCHHHHHHHHHhCCCCEEEEecCcccCCCCCCCccHHHHHHHHHhhcCCCEEEEcCCCCHHHHHHh--cCCCEEEEChHH
Confidence            344555666665433334432222   11    122345555654 579999999999 5999996  999999999998


Q ss_pred             ecC
Q 021156          165 FNN  167 (316)
Q Consensus       165 ~~~  167 (316)
                      .+.
T Consensus       233 ~~~  235 (271)
T 1ujp_A          233 VRA  235 (271)
T ss_dssp             HHH
T ss_pred             hcc
Confidence            874

>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}

Probab=96.66  E-value=0.0026  Score=56.62  Aligned_cols=81  Identities=17%  Similarity=-0.001  Sum_probs=54.5

Q ss_pred             HHHHHHHHcCCCcce--EEEecCC----cccHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCC
Q 021156           97 EFANLYKEDGLTGGH--AIMLGAD----PLSKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQ  169 (316)
Q Consensus        97 e~a~~~~~~G~~~l~--lvDLda~----~~~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~  169 (316)
                      +.++...+.|++.+-  +..+...    .++...+.+..+. ++|++..|||+ .+++.+++++||+-|++|+++.+-  
T Consensus       140 eea~~a~~~Gad~Ig~~~~g~t~~~~~~~~~~~li~~l~~~-~ipvIA~GGI~t~~d~~~~~~~GadgV~VGsai~~p--  216 (229)
T 3q58_A          140 NEGISCHQKGIEFIGTTLSGYTGPITPVEPDLAMVTQLSHA-GCRVIAEGRYNTPALAANAIEHGAWAVTVGSAITRI--  216 (229)
T ss_dssp             HHHHHHHHTTCSEEECTTTTSSSSCCCSSCCHHHHHHHHTT-TCCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHCH--
T ss_pred             HHHHHHHhCCCCEEEecCccCCCCCcCCCCCHHHHHHHHHc-CCCEEEECCCCCHHHHHHHHHcCCCEEEEchHhcCh--
Confidence            466777788888652  1222211    2334444444444 89999999998 699999999999999999887762  


Q ss_pred             CCHHHHHHHHHHh
Q 021156          170 MDLERLKDLVRVV  182 (316)
Q Consensus       170 ~~~eli~ei~~~~  182 (316)
                        ....+++.+.+
T Consensus       217 --~~~~~~f~~~~  227 (229)
T 3q58_A          217 --EHICQWFSHAV  227 (229)
T ss_dssp             --HHHHHHHHHHH
T ss_pred             --HHHHHHHHHHH
Confidence              34455554443

>1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A

Probab=96.65  E-value=0.04  Score=48.14  Aligned_cols=161  Identities=14%  Similarity=0.068  Sum_probs=97.8

Q ss_pred             cCCC-HHHHHHHHHcCCCEEEeCCeeec-CC-CCCHHHHHHHHHHhcC--ceEEEeeeeee-------c-CCeeEEEeCC
Q 021156          140 GGIN-SDNSLSYIEEGATHVIVTSYVFN-NG-QMDLERLKDLVRVVGK--QRLVLDLSCRK-------K-DGKYAIVTDR  206 (316)
Q Consensus       140 GGIr-~e~~~~~l~~Gad~VVigt~~~~-~~-~~~~eli~ei~~~~G~--~~IvvslD~k~-------~-~g~~~v~~~g  206 (316)
                      +|++ .+|++.+.++|||.+  |-.++. .+ .++++...++.+..++  .++-+.++-..       + -+--.|..+|
T Consensus         7 CGit~~eda~~a~~~GaD~i--Gfif~~~SpR~V~~~~a~~i~~~~~~~~~~VgVfvn~~~~~i~~~~~~~~ld~vQLHG   84 (205)
T 1nsj_A            7 CGITNLEDALFSVESGADAV--GFVFYPKSKRYISPEDARRISVELPPFVFRVGVFVNEEPEKILDVASYVQLNAVQLHG   84 (205)
T ss_dssp             CCCCSHHHHHHHHHHTCSEE--EEECCTTCTTBCCHHHHHHHHHHSCSSSEEEEEESSCCHHHHHHHHHHHTCSEEEECS
T ss_pred             CCCCcHHHHHHHHHcCCCEE--EEEecCCCCCcCCHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHhhCCCEEEECC
Confidence            5787 699999999999986  334332 33 3578999999887643  34444433210       0 0112556665


Q ss_pred             cceec---------------cc-CHHHHHHHHHHcCCCEEEEeecC--CccccCCCCHHHHHHHhhcCCCcEEEEeCCCC
Q 021156          207 WQKFS---------------DV-YLDERVLDFLASYADEFLVHGVD--VEGKKLGIDDELVALLGKYSPIPVTYAGGVTT  268 (316)
Q Consensus       207 w~~~~---------------~~-~~~e~a~~~~~~Ga~~ilvtdi~--~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s  268 (316)
                      -....               .+ +..++ ..+....++.+++-.-.  .-|+..-+||++++.+. ..+.|++.+||+. 
T Consensus        85 ~e~~~~~~~l~~~~~vika~~v~~~~~l-~~~~~~~~d~~LlD~~~~~~GGtG~~fdw~~l~~~~-~~~~p~~LAGGL~-  161 (205)
T 1nsj_A           85 EEPIELCRKIAERILVIKAVGVSNERDM-ERALNYREFPILLDTKTPEYGGSGKTFDWSLILPYR-DRFRYLVLSGGLN-  161 (205)
T ss_dssp             CCCHHHHHHHHTTSEEEEEEEESSHHHH-HHHGGGTTSCEEEEESCSSSSSCCSCCCGGGTGGGG-GGSSCEEEESSCC-
T ss_pred             CCCHHHHHHHhcCCCEEEEEEcCCHHHH-HHHHHcCCCEEEECCCCCCCCCCCCccCHHHHHhhh-cCCCcEEEECCCC-
Confidence            32100               00 11111 22223337777753322  14777888999887642 2367999999995 


Q ss_pred             HHHHHHHHH-hCCCcCEEEEccchhhc--cCcccHHHHHHHHHh
Q 021156          269 MADLEKIKV-AGIGRVDVTVGSALDIF--GGNLAYKDVVAWHAQ  309 (316)
Q Consensus       269 ~eDi~~l~~-~G~g~~gVivG~Al~~~--~g~~~~~~~~~~~~~  309 (316)
                      ++.+.++.+ .+  .+||=+.+.+  =  .|.=+.+.+.+++++
T Consensus       162 peNV~~ai~~~~--p~gVDvsSGv--E~~pG~KD~~ki~~fi~~  201 (205)
T 1nsj_A          162 PENVRSAIDVVR--PFAVDVSSGV--EAFPGKKDHDSIKMFIKN  201 (205)
T ss_dssp             TTTHHHHHHHHC--CSEEEESGGG--EEETTEECHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC--CCEEEECCce--ecCCCCcCHHHHHHHHHH
Confidence            567766554 56  8999999999  4  266678888777765

>3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis}

Probab=96.64  E-value=0.0078  Score=55.36  Aligned_cols=127  Identities=14%  Similarity=0.168  Sum_probs=76.9

Q ss_pred             HHHHHHHHcCCCEE--EeCCeeecCCCC--CHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHH
Q 021156          145 DNSLSYIEEGATHV--IVTSYVFNNGQM--DLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVL  220 (316)
Q Consensus       145 e~~~~~l~~Gad~V--Vigt~~~~~~~~--~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~  220 (316)
                      .+++.+++.|||-|  |++-..++++..  -.+.+.++++..+ +.+     +|      .+.-.+...  .-.....++
T Consensus       130 ~Ea~~Ai~~GAdEIDmVINig~lk~g~~~~v~~eI~~V~~a~~-~~~-----lK------VIlEt~~Lt--~eei~~A~~  195 (288)
T 3oa3_A          130 SEAKRAMQNGASELDMVMNYPWLSEKRYTDVFQDIRAVRLAAK-DAI-----LK------VILETSQLT--ADEIIAGCV  195 (288)
T ss_dssp             HHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTT-TSE-----EE------EECCGGGCC--HHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEEEeehhhhcCCcHHHHHHHHHHHHHHhc-CCC-----ce------EEEECCCCC--HHHHHHHHH
Confidence            57889999999974  465555443321  1345556666654 222     12      111112111  112444567


Q ss_pred             HHHHcCCCEEEEeecCCcccc-CCC---CHHHHHHHhh--cCCCcEEEEeCCCCHHHHHHHHHhCCCcC--EEEEccch
Q 021156          221 DFLASYADEFLVHGVDVEGKK-LGI---DDELVALLGK--YSPIPVTYAGGVTTMADLEKIKVAGIGRV--DVTVGSAL  291 (316)
Q Consensus       221 ~~~~~Ga~~ilvtdi~~dG~~-~G~---d~eli~~l~~--~~~iPVIasGGI~s~eDi~~l~~~G~g~~--gVivG~Al  291 (316)
                      ...+.|++.|= |+   .|.. .|.   |.++++++.+  -.++||.++|||++.+|+.+++++|  ++  |.-.|.++
T Consensus       196 ia~eaGADfVK-TS---TGf~~~GAT~edv~lmr~~v~~~g~~v~VKAAGGIrt~edAl~mi~aG--A~RiGtS~g~~I  268 (288)
T 3oa3_A          196 LSSLAGADYVK-TS---TGFNGPGASIENVSLMSAVCDSLQSETRVKASGGIRTIEDCVKMVRAG--AERLGASAGVKI  268 (288)
T ss_dssp             HHHHTTCSEEE-CC---CSSSSCCCCHHHHHHHHHHHHHSSSCCEEEEESSCCSHHHHHHHHHTT--CSEEEESCHHHH
T ss_pred             HHHHcCCCEEE-cC---CCCCCCCCCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcC--CceeehhhHHHH
Confidence            77899999653 33   2322 232   6667777764  2579999999999999999999998  66  44444444

>3toy_A Mandelate racemase/muconate lactonizing enzyme FA protein; enolase, magnesium binding site, lyase; HET: P4C; 1.80A {Bradyrhizobium SP} PDB: 3tte_A*

Probab=96.63  E-value=0.012  Score=56.28  Aligned_cols=149  Identities=12%  Similarity=-0.001  Sum_probs=102.6

Q ss_pred             CcEEEecCCC-H----HHHHHHHHc-CCCE--EEeCCe-eecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEe
Q 021156          134 GGLQVGGGIN-S----DNSLSYIEE-GATH--VIVTSY-VFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVT  204 (316)
Q Consensus       134 ~pl~vGGGIr-~----e~~~~~l~~-Gad~--VVigt~-~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~  204 (316)
                      +|+..-+|+. .    ++++++++. |...  +=+|.. ...+    .+.++.+.+.+|+ .+.+.+|+.          
T Consensus       157 v~~y~s~g~~~~e~~~~~a~~~~~~~G~~~~KlKvG~~~~~~d----~~~v~avR~a~G~-~~~l~vDaN----------  221 (383)
T 3toy_A          157 IPAYDSYGVLDARDDERTLRTACDEHGFRAIKSKGGHGDLATD----EAMIKGLRALLGP-DIALMLDFN----------  221 (383)
T ss_dssp             EEEEEECSSCCHHHHHHHHHHHHHTSCCCEEEEECCSSCHHHH----HHHHHHHHHHHCT-TSEEEEECT----------
T ss_pred             eEEeEecCCCCHHHHHHHHHHHHHccCCcEEEEecCCCCHHHH----HHHHHHHHHHhCC-CCeEEEeCC----------
Confidence            5666556774 3    346777888 9875  445652 2333    8899999999985 456788873          


Q ss_pred             CCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCE
Q 021156          205 DRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVD  284 (316)
Q Consensus       205 ~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~g  284 (316)
                      .+|...   +..++++.+.+.|+..+  -     .-....|++.++++++.+++||.+...+.+..|+.++++.+ .++.
T Consensus       222 ~~~~~~---~A~~~~~~l~~~~i~~i--E-----eP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~-a~d~  290 (383)
T 3toy_A          222 QSLDPA---EATRRIARLADYDLTWI--E-----EPVPQENLSGHAAVRERSEIPIQAGENWWFPRGFAEAIAAG-ASDF  290 (383)
T ss_dssp             TCSCHH---HHHHHHHHHGGGCCSEE--E-----CCSCTTCHHHHHHHHHHCSSCEEECTTCCHHHHHHHHHHHT-CCSE
T ss_pred             CCCCHH---HHHHHHHHHHhhCCCEE--E-----CCCCcchHHHHHHHHhhcCCCEEeCCCcCCHHHHHHHHHcC-CCCE
Confidence            356532   35678889988887754  1     11222389999999998999999999999999999999988 3666


Q ss_pred             EEEccchhhccCcccHHHHHHHHHhh
Q 021156          285 VTVGSALDIFGGNLAYKDVVAWHAQQ  310 (316)
Q Consensus       285 VivG~Al~~~~g~~~~~~~~~~~~~~  310 (316)
                      +.+--+-  .+|-....++.++++++
T Consensus       291 v~ik~~~--~GGit~~~~ia~~A~~~  314 (383)
T 3toy_A          291 IMPDLMK--VGGITGWLNVAGQADAA  314 (383)
T ss_dssp             ECCCTTT--TTHHHHHHHHHHHHHHH
T ss_pred             EEeCccc--cCCHHHHHHHHHHHHHc
Confidence            6665555  44544445555555554

>1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4

Probab=96.63  E-value=0.023  Score=49.58  Aligned_cols=156  Identities=15%  Similarity=0.071  Sum_probs=97.0

Q ss_pred             cCCC-HHHHHHHHHcCCCEEEeCCeeec-CC-CCCHHHHHHHHHHhcC--ceEEEeeeeee--------cCCeeEEEeCC
Q 021156          140 GGIN-SDNSLSYIEEGATHVIVTSYVFN-NG-QMDLERLKDLVRVVGK--QRLVLDLSCRK--------KDGKYAIVTDR  206 (316)
Q Consensus       140 GGIr-~e~~~~~l~~Gad~VVigt~~~~-~~-~~~~eli~ei~~~~G~--~~IvvslD~k~--------~~g~~~v~~~g  206 (316)
                      +|++ .+|++.+.++|||.+  |-.++. .+ .++++...++.+..++  .++-+.++-..        .-+-..|..+|
T Consensus         6 CGit~~eda~~a~~~GaD~i--Gfif~~~SpR~V~~~~a~~i~~~~~~~~~~VgVfvn~~~~~i~~~~~~~~ld~vQLHG   83 (203)
T 1v5x_A            6 CGITRLEDALLAEALGAFAL--GFVLAPGSRRRIAPEAARAIGEALGPFVVRVGVFRDQPPEEVLRLMEEARLQVAQLHG   83 (203)
T ss_dssp             CCCCCHHHHHHHHHHTCSEE--EEECCTTCTTBCCHHHHHHHHHHSCSSSEEEEEESSCCHHHHHHHHHHTTCSEEEECS
T ss_pred             cCCCcHHHHHHHHHcCCCEE--EEEecCCCCCcCCHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHhhCCCEEEECC
Confidence            5787 699999999999986  334332 23 3578999999887743  34444443210        00112556665


Q ss_pred             cceecccCHHHHHHHH--------------------HHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCC
Q 021156          207 WQKFSDVYLDERVLDF--------------------LASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGV  266 (316)
Q Consensus       207 w~~~~~~~~~e~a~~~--------------------~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI  266 (316)
                      -..     + +.++.+                    ....++.+++ |-..-|+..-+||++++.+. ..+.|++.+||+
T Consensus        84 ~e~-----~-~~~~~l~~~~~vika~~v~~~~~l~~~~~~~d~~Ll-D~~~gGtG~~fdW~~l~~~~-~~~~p~~LAGGL  155 (203)
T 1v5x_A           84 EEP-----P-EWAEAVGRFYPVIKAFPLEGPARPEWADYPAQALLL-DGKRPGSGEAYPRAWAKPLL-ATGRRVILAGGI  155 (203)
T ss_dssp             CCC-----H-HHHHHHTTTSCEEEEEECSSSCCGGGGGSSCSEEEE-ECSSTTSCCCCCGGGGHHHH-HTTSCEEECSSC
T ss_pred             CCC-----H-HHHHHhccCCCEEEEEEcCChHhhhhhhcCCCEEEE-cCCCCCCCCccCHHHHHhhh-ccCCcEEEECCC
Confidence            321     1 222222                    1112555553 32235777888999988732 235799999999


Q ss_pred             CCHHHHHHHHHhCCCcCEEEEccchhhc--cCcccHHHHHHHHHhh
Q 021156          267 TTMADLEKIKVAGIGRVDVTVGSALDIF--GGNLAYKDVVAWHAQQ  310 (316)
Q Consensus       267 ~s~eDi~~l~~~G~g~~gVivG~Al~~~--~g~~~~~~~~~~~~~~  310 (316)
                      .- +.+.++...+  .+||=+.+.+  =  .|.=+.+.+.+++++-
T Consensus       156 ~p-eNV~~ai~~~--p~gVDvsSGv--E~~pG~KD~~ki~~fi~~~  196 (203)
T 1v5x_A          156 AP-ENLEEVLALR--PYALDLASGV--EEAPGVKSAEKLRALFARL  196 (203)
T ss_dssp             CS-TTHHHHHHHC--CSEEEESGGG--EEETTEECHHHHHHHHHHH
T ss_pred             CH-HHHHHHHhcC--CCEEEeCCce--ecCCCCcCHHHHHHHHHHH
Confidence            54 6776655667  8999999999  4  2666788887777653

>3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A* 3dg7_A*

Probab=96.62  E-value=0.014  Score=55.19  Aligned_cols=137  Identities=14%  Similarity=0.021  Sum_probs=95.6

Q ss_pred             HHHHHHHHc-CCCE--EEeCCeee-cCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHH
Q 021156          145 DNSLSYIEE-GATH--VIVTSYVF-NNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVL  220 (316)
Q Consensus       145 e~~~~~l~~-Gad~--VVigt~~~-~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~  220 (316)
                      ++++++++. |...  +=+|.... .+    .+.++.+.+.+|+ .+.+.+|..          .+|...   +..++++
T Consensus       145 ~~a~~~~~~~G~~~~K~K~g~~~~~~d----~~~v~avR~a~g~-~~~l~vDan----------~~~~~~---~a~~~~~  206 (367)
T 3dg3_A          145 AEAERIRETYGINTFKVKVGRRPVQLD----TAVVRALRERFGD-AIELYVDGN----------RGWSAA---ESLRAMR  206 (367)
T ss_dssp             HHHHHHHHHHCCCEEEEECCCSSTHHH----HHHHHHHHHHHGG-GSEEEEECT----------TCSCHH---HHHHHHH
T ss_pred             HHHHHHHHhcCccEEEEeeCCChhhhH----HHHHHHHHHHhCC-CCEEEEECC----------CCCCHH---HHHHHHH
Confidence            446677777 9775  44555333 33    8899999999984 455788873          356532   3566778


Q ss_pred             HHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccH
Q 021156          221 DFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAY  300 (316)
Q Consensus       221 ~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~  300 (316)
                      .+.+.|+..+  -.     -....|++.++++++.+++||.+.+.+.+.+++.++++.+ .++.+.+=-+-  . |-...
T Consensus       207 ~l~~~~i~~i--Eq-----P~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~-~~d~v~~k~~~--~-Git~~  275 (367)
T 3dg3_A          207 EMADLDLLFA--EE-----LCPADDVLSRRRLVGQLDMPFIADESVPTPADVTREVLGG-SATAISIKTAR--T-GFTGS  275 (367)
T ss_dssp             HTTTSCCSCE--ES-----CSCTTSHHHHHHHHHHCSSCEEECTTCSSHHHHHHHHHHT-SCSEEEECHHH--H-TTHHH
T ss_pred             HHHHhCCCEE--EC-----CCCcccHHHHHHHHHhCCCCEEecCCcCCHHHHHHHHHcC-CCCEEEeehhh--h-hHHHH
Confidence            8888777643  11     1222378999999998999999999999999999999988 47777775444  5 65455


Q ss_pred             HHHHHHHHhh
Q 021156          301 KDVVAWHAQQ  310 (316)
Q Consensus       301 ~~~~~~~~~~  310 (316)
                      .++.++++++
T Consensus       276 ~~ia~~A~~~  285 (367)
T 3dg3_A          276 TRVHHLAEGL  285 (367)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHc
Confidence            5565565554

>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*

Probab=96.62  E-value=0.0029  Score=60.45  Aligned_cols=83  Identities=14%  Similarity=0.111  Sum_probs=63.1

Q ss_pred             CHHHHHHHHHHcCCCcceEEEec--CCc--ccHHHHHHHHHhCCCcEEEecCCCHHHHHHHHHcC-CCEEEeCCeeecCC
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLG--ADP--LSKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEG-ATHVIVTSYVFNNG  168 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLd--a~~--~~~~~i~~~v~~~~~pl~vGGGIr~e~~~~~l~~G-ad~VVigt~~~~~~  168 (316)
                      +..++|+.++++|++.+|+.-=.  ...  .....+.++.+.+++|+++.|||+.++++++++.| ||.|.+|..++.| 
T Consensus       256 ~~~~la~~le~~Gvd~i~v~~~~~~~~~~~~~~~~~~~ik~~~~iPvi~~Ggi~~~~a~~~l~~g~aD~V~igR~~l~~-  334 (377)
T 2r14_A          256 MAFYLAGELDRRGLAYLHFNEPDWIGGDITYPEGFREQMRQRFKGGLIYCGNYDAGRAQARLDDNTADAVAFGRPFIAN-  334 (377)
T ss_dssp             HHHHHHHHHHHTTCSEEEEECCC------CCCTTHHHHHHHHCCSEEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHC-
T ss_pred             HHHHHHHHHHHcCCCEEEEeCCcccCCCCcchHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCceEEeecHHHHhC-
Confidence            35678999999999988875311  001  12222333334689999999999879999999998 9999999999998 


Q ss_pred             CCCHHHHHHHHH
Q 021156          169 QMDLERLKDLVR  180 (316)
Q Consensus       169 ~~~~eli~ei~~  180 (316)
                         |+++.++.+
T Consensus       335 ---P~l~~k~~~  343 (377)
T 2r14_A          335 ---PDLPERFRL  343 (377)
T ss_dssp             ---TTHHHHHHH
T ss_pred             ---chHHHHHHc
Confidence               999999876

>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}

Probab=96.61  E-value=0.0061  Score=58.25  Aligned_cols=74  Identities=18%  Similarity=0.230  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHcCCCEEEEeecCCccccCCC--CHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          215 LDERVLDFLASYADEFLVHGVDVEGKKLGI--DDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       215 ~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~--d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      ..+.++.+.+.|++.+.+|....-+...++  +|+.++++++.+++||++ ||+.+.++++++.+.|  +++++||++-
T Consensus       167 ~~e~a~~~~~agad~i~i~~~~~~~~~~~~~~~~~~i~~l~~~~~~pvi~-ggi~t~e~a~~~~~~G--ad~i~vg~Gg  242 (393)
T 2qr6_A          167 VREIAPIVIKAGADLLVIQGTLISAEHVNTGGEALNLKEFIGSLDVPVIA-GGVNDYTTALHMMRTG--AVGIIVGGGE  242 (393)
T ss_dssp             HHHHHHHHHHTTCSEEEEECSSCCSSCCCC-----CHHHHHHHCSSCEEE-ECCCSHHHHHHHHTTT--CSEEEESCCS
T ss_pred             HHHHHHHHHHCCCCEEEEeCCccccccCCCcccHHHHHHHHHhcCCCEEE-CCcCCHHHHHHHHHcC--CCEEEECCCc
Confidence            467788888899998876643211112222  677788888888999999 8999999999999988  9999998754

>4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A*

Probab=96.60  E-value=0.011  Score=56.68  Aligned_cols=135  Identities=11%  Similarity=0.035  Sum_probs=96.9

Q ss_pred             HHHHHcCCCEE--EeCC-------eeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHH
Q 021156          148 LSYIEEGATHV--IVTS-------YVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDER  218 (316)
Q Consensus       148 ~~~l~~Gad~V--Vigt-------~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~  218 (316)
                      +++.+.|...+  =+|.       ....+    .+.++.+.+.+|+ .+-+.+|+.          .+|...   +..++
T Consensus       149 ~~~~~~G~~~~KlKvG~~~~~~~~~~~~d----~~~v~avR~a~g~-~~~l~vDaN----------~~~~~~---~A~~~  210 (393)
T 4dwd_A          149 RRVEAEQPAAVKIRWDGDRTRCDVDIPGD----IAKARAVRELLGP-DAVIGFDAN----------NGYSVG---GAIRV  210 (393)
T ss_dssp             HHHHHHCCSEEEEECCCCTTCCSCCHHHH----HHHHHHHHHHHCT-TCCEEEECT----------TCCCHH---HHHHH
T ss_pred             HHHHHcCCCEEEEccCCCCcccccCHHHH----HHHHHHHHHHhCC-CCeEEEECC----------CCCCHH---HHHHH
Confidence            67778898754  4454       22333    7889999999975 455778873          356532   46678


Q ss_pred             HHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcc
Q 021156          219 VLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNL  298 (316)
Q Consensus       219 a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~  298 (316)
                      ++.+.+.|+..+  -    + -...-|++.++++++.+++||.+...+.+.+++.++++.+  ++.+.+--+-  .+|-.
T Consensus       211 ~~~L~~~~i~~i--E----q-P~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~--~d~v~~k~~~--~GGit  279 (393)
T 4dwd_A          211 GRALEDLGYSWF--E----E-PVQHYHVGAMGEVAQRLDITVSAGEQTYTLQALKDLILSG--VRMVQPDIVK--MGGIT  279 (393)
T ss_dssp             HHHHHHTTCSEE--E----C-CSCTTCHHHHHHHHHHCSSEEEBCTTCCSHHHHHHHHHHT--CCEECCCTTT--TTHHH
T ss_pred             HHHHHhhCCCEE--E----C-CCCcccHHHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcC--CCEEEeCccc--cCCHH
Confidence            899999988754  1    1 1122389999999998999999999999999999999988  8888887666  66655


Q ss_pred             cHHHHHHHHHhhc
Q 021156          299 AYKDVVAWHAQQE  311 (316)
Q Consensus       299 ~~~~~~~~~~~~~  311 (316)
                      ...++.++++++.
T Consensus       280 ~~~~ia~~A~~~g  292 (393)
T 4dwd_A          280 GMMQCAALAHAHG  292 (393)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcC
Confidence            5556666665543

>2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A {Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A*

Probab=96.60  E-value=0.0087  Score=57.33  Aligned_cols=140  Identities=15%  Similarity=0.126  Sum_probs=96.2

Q ss_pred             HHHHHHHHcCCCEEEe--CCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH
Q 021156          145 DNSLSYIEEGATHVIV--TSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF  222 (316)
Q Consensus       145 e~~~~~l~~Gad~VVi--gt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~  222 (316)
                      ++++++.+.|.+.+=+  |.   .+.+.+.+.++.+.+.+|+ .+-+.+|+.          .+|...   +..++++.+
T Consensus       181 ~~a~~~~~~Gf~~vKik~g~---~~~~~d~e~v~avR~avG~-d~~l~vDan----------~~~~~~---~ai~~~~~l  243 (398)
T 2pp0_A          181 KNVVISRENGIGGIKLKVGQ---PNCAEDIRRLTAVREALGD-EFPLMVDAN----------QQWDRE---TAIRMGRKM  243 (398)
T ss_dssp             HHHHHHHHTTCSCEEEECCC---SCHHHHHHHHHHHHHHHCS-SSCEEEECT----------TCSCHH---HHHHHHHHH
T ss_pred             HHHHHHHHhCCCeEEEecCC---CCHHHHHHHHHHHHHHcCC-CCeEEEECC----------CCCCHH---HHHHHHHHH
Confidence            4577788889886544  32   1111136888888888975 455677873          356422   356788888


Q ss_pred             HHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHH
Q 021156          223 LASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKD  302 (316)
Q Consensus       223 ~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~  302 (316)
                      .+.|+..+  -     .-....|++.++++++.+++||.+.+.+.+.++++++++.+ .++.+.+--.-  .+|-....+
T Consensus       244 ~~~~i~~i--E-----qP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~-~~d~v~ik~~~--~GGite~~~  313 (398)
T 2pp0_A          244 EQFNLIWI--E-----EPLDAYDIEGHAQLAAALDTPIATGEMLTSFREHEQLILGN-ASDFVQPDAPR--VGGISPFLK  313 (398)
T ss_dssp             GGGTCSCE--E-----CCSCTTCHHHHHHHHHHCSSCEEECTTCCSHHHHHHHHHTT-CCSEECCCHHH--HTSHHHHHH
T ss_pred             HHcCCcee--e-----CCCChhhHHHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcC-CCCEEEeCccc--cCCHHHHHH
Confidence            88888743  1     11223489999999998999999999999999999999988 47777776555  555444555


Q ss_pred             HHHHHHhhc
Q 021156          303 VVAWHAQQE  311 (316)
Q Consensus       303 ~~~~~~~~~  311 (316)
                      +.++++++.
T Consensus       314 i~~~A~~~g  322 (398)
T 2pp0_A          314 IMDLAAKHG  322 (398)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHcC
Confidence            555665543

>3sjn_A Mandelate racemase/muconate lactonizing protein; enolase, magnesium binding site, lyase; 1.90A {Shewanella pealeana}

Probab=96.59  E-value=0.0072  Score=57.46  Aligned_cols=138  Identities=10%  Similarity=0.015  Sum_probs=96.3

Q ss_pred             HHHHHHHHcCCCEEE--eCC---eeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcc-eecccCHHHH
Q 021156          145 DNSLSYIEEGATHVI--VTS---YVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQ-KFSDVYLDER  218 (316)
Q Consensus       145 e~~~~~l~~Gad~VV--igt---~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~-~~~~~~~~e~  218 (316)
                      +.++++.+.|.+.+=  +|.   ....    +.+.++.+.+.+|+ .+-+.+|+.          .+|. ..   +..++
T Consensus       152 ~~a~~~~~~Gf~~iKlk~g~~g~~~~~----d~~~v~avR~a~g~-~~~l~vDan----------~~~~d~~---~A~~~  213 (374)
T 3sjn_A          152 AIVQGLKDQGFSSIKFGGGVMGDDPDT----DYAIVKAVREAAGP-EMEVQIDLA----------SKWHTCG---HSAMM  213 (374)
T ss_dssp             HHHHHHHTTTCSEEEEECTTTTSCHHH----HHHHHHHHHHHHCS-SSEEEEECT----------TTTCSHH---HHHHH
T ss_pred             HHHHHHHHcCCCEEEeccCCCCCCHHH----HHHHHHHHHHHhCC-CCeEEEECC----------CCCCCHH---HHHHH
Confidence            457788889988654  342   1233    37889999999975 456778873          3565 21   35677


Q ss_pred             HHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcc
Q 021156          219 VLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNL  298 (316)
Q Consensus       219 a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~  298 (316)
                      ++.+.+.|+..+  -    + -....|++.++++++.+++||.+.+-+.+.+++.++++.+ .++.+.+--+-  .+|-.
T Consensus       214 ~~~l~~~~i~~i--E----q-P~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~-~~d~v~~k~~~--~GGit  283 (374)
T 3sjn_A          214 AKRLEEFNLNWI--E----E-PVLADSLISYEKLSRQVSQKIAGGESLTTRYEFQEFITKS-NADIVQPDITR--CGGIT  283 (374)
T ss_dssp             HHHSGGGCCSEE--E----C-SSCTTCHHHHHHHHHHCSSEEEECTTCCHHHHHHHHHHHH-CCSEECCBTTT--SSHHH
T ss_pred             HHHhhhcCceEE--E----C-CCCcccHHHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHcC-CCCEEEeCccc--cCCHH
Confidence            888888888754  1    1 1222389999999999999999999999999999999987 37777766555  55544


Q ss_pred             cHHHHHHHHHhh
Q 021156          299 AYKDVVAWHAQQ  310 (316)
Q Consensus       299 ~~~~~~~~~~~~  310 (316)
                      ...++.++++++
T Consensus       284 ~~~~ia~~A~~~  295 (374)
T 3sjn_A          284 EMKKIYDIAQMN  295 (374)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc
Confidence            444555555554

>4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase, aldolase, structural genomics, biology; 1.35A {Unidentified}

Probab=96.56  E-value=0.016  Score=55.82  Aligned_cols=139  Identities=17%  Similarity=0.092  Sum_probs=96.6

Q ss_pred             HHHHHHHHcCCCEEEe--CCe-------------eecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcce
Q 021156          145 DNSLSYIEEGATHVIV--TSY-------------VFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQK  209 (316)
Q Consensus       145 e~~~~~l~~Gad~VVi--gt~-------------~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~  209 (316)
                      ++++++.+.|...+=+  |..             ...    +.+.++.+.+.+|+ .+-+.+|+.          .+|..
T Consensus       150 ~~a~~~~~~G~~~iKlK~g~~~~~~~g~~~~~~~~~~----d~~~v~avR~a~G~-d~~l~vDaN----------~~~~~  214 (412)
T 4e4u_A          150 ECAAENVKLGFTAVKFDPAGPYTAYSGHQLSLEVLDR----CELFCRRVREAVGS-KADLLFGTH----------GQMVP  214 (412)
T ss_dssp             HHHHHHHHHTCSEEEECCSCCCBTTCCBCCCHHHHHH----HHHHHHHHHHHHTT-SSEEEECCC----------SCBCH
T ss_pred             HHHHHHHHcCCCEEEECCCCCCccccccccchhhHHH----HHHHHHHHHHHhCC-CCeEEEECC----------CCCCH
Confidence            3467788889887655  321             112    36788999999985 455778873          35653


Q ss_pred             ecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEcc
Q 021156          210 FSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGS  289 (316)
Q Consensus       210 ~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~  289 (316)
                      .   +..++++.+.+.|+..+  -.     -....|++.++++++.+++||.+.+.+.+.+++.++++.+ .++.+.+--
T Consensus       215 ~---~A~~~~~~L~~~~i~~i--Ee-----P~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~-a~d~v~~d~  283 (412)
T 4e4u_A          215 S---SAIRLAKRLEKYDPLWF--EE-----PVPPGQEEAIAQVAKHTSIPIATGERLTTKYEFHKLLQAG-GASILQLNV  283 (412)
T ss_dssp             H---HHHHHHHHHGGGCCSEE--EC-----CSCSSCHHHHHHHHHTCSSCEEECTTCCHHHHHHHHHHTT-CCSEECCCT
T ss_pred             H---HHHHHHHHhhhcCCcEE--EC-----CCChhhHHHHHHHHhhCCCCEEecCccCCHHHHHHHHHcC-CCCEEEeCc
Confidence            2   45678889989887754  21     1122389999999999999999999999999999999988 367666665


Q ss_pred             chhhccCcccHHHHHHHHHhhc
Q 021156          290 ALDIFGGNLAYKDVVAWHAQQE  311 (316)
Q Consensus       290 Al~~~~g~~~~~~~~~~~~~~~  311 (316)
                      +-  .+|-....++.++++++.
T Consensus       284 ~~--~GGit~~~kia~~A~~~g  303 (412)
T 4e4u_A          284 AR--VGGLLEAKKIATLAEVHY  303 (412)
T ss_dssp             TT--TTSHHHHHHHHHHHHHTT
T ss_pred             cc--cCCHHHHHHHHHHHHHcC
Confidence            55  556444555555555543

>3ro6_B Putative chloromuconate cycloisomerase; TIM barrel; 2.20A {Methylococcus capsulatus} PDB: 3rit_A

Probab=96.55  E-value=0.006  Score=57.59  Aligned_cols=139  Identities=11%  Similarity=-0.010  Sum_probs=99.1

Q ss_pred             HHHHHHHHcCCCE--EEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH
Q 021156          145 DNSLSYIEEGATH--VIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF  222 (316)
Q Consensus       145 e~~~~~l~~Gad~--VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~  222 (316)
                      ++++++.+.|...  +=+|.....+    .+.++.+.+.+|+ .+-+.+|+.          .+|...   +..++++.+
T Consensus       146 ~~a~~~~~~G~~~~K~K~G~~~~~d----~~~v~avR~~~g~-~~~l~vDan----------~~~~~~---~a~~~~~~l  207 (356)
T 3ro6_B          146 AEAREHLALGFRVLKVKLCGDEEQD----FERLRRLHETLAG-RAVVRVDPN----------QSYDRD---GLLRLDRLV  207 (356)
T ss_dssp             HHHHHHHHTTCCEEEEECCSCHHHH----HHHHHHHHHHHTT-SSEEEEECT----------TCCCHH---HHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEEEeCCCHHHH----HHHHHHHHHHhCC-CCEEEEeCC----------CCCCHH---HHHHHHHHH
Confidence            4577788889875  4456544444    7899999999975 456788873          356532   456788999


Q ss_pred             HHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHH
Q 021156          223 LASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKD  302 (316)
Q Consensus       223 ~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~  302 (316)
                      .+.++..+  -    + -...-|++.++++++.+++||.+.+-+.+.+|+.++++.+..++.+.+--+-  .+|-....+
T Consensus       208 ~~~~i~~i--E----q-P~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~~~~~~~~d~v~~k~~~--~GGit~~~~  278 (356)
T 3ro6_B          208 QELGIEFI--E----Q-PFPAGRTDWLRALPKAIRRRIAADESLLGPADAFALAAPPAACGIFNIKLMK--CGGLAPARR  278 (356)
T ss_dssp             HHTTCCCE--E----C-CSCTTCHHHHHTSCHHHHHTEEESTTCCSHHHHHHHHSSSCSCSEEEECHHH--HCSHHHHHH
T ss_pred             HhcCCCEE--E----C-CCCCCcHHHHHHHHhcCCCCEEeCCcCCCHHHHHHHHhcCCcCCEEEEcccc--cCCHHHHHH
Confidence            99887754  1    1 1222389999999888889999999999999999999875128888887766  666544555


Q ss_pred             HHHHHHhh
Q 021156          303 VVAWHAQQ  310 (316)
Q Consensus       303 ~~~~~~~~  310 (316)
                      +.++++++
T Consensus       279 i~~~a~~~  286 (356)
T 3ro6_B          279 IATIAETA  286 (356)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHc
Confidence            55555554

>3bjs_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI-2, protein struc initiative; 2.70A {Polaromonas SP}

Probab=96.55  E-value=0.013  Score=56.78  Aligned_cols=138  Identities=14%  Similarity=0.106  Sum_probs=94.7

Q ss_pred             HHHHHHHHcCCCEEEe--CCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH
Q 021156          145 DNSLSYIEEGATHVIV--TSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF  222 (316)
Q Consensus       145 e~~~~~l~~Gad~VVi--gt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~  222 (316)
                      +.++++.+.|.+.+=+  |.....    +.+.++.+.+.+|++ +.+.+|+.          .+|...   +..++++.+
T Consensus       191 ~~a~~~~~~Gf~~vKik~g~~~~~----d~e~v~avR~avG~d-~~l~vDan----------~~~~~~---eai~~~~~L  252 (428)
T 3bjs_A          191 EEAQEYIARGYKALKLRIGDAARV----DIERVRHVRKVLGDE-VDILTDAN----------TAYTMA---DARRVLPVL  252 (428)
T ss_dssp             HHHHHHHHHTCSEEEEECCSCHHH----HHHHHHHHHHHHCTT-SEEEEECT----------TCCCHH---HHHHHHHHH
T ss_pred             HHHHHHHHCCCCEEEECCCCCHHH----HHHHHHHHHHhcCCC-CEEEEECC----------CCCCHH---HHHHHHHHH
Confidence            4577778889887654  331222    378888888889754 55678873          245422   356788889


Q ss_pred             HHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCC-CcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHH
Q 021156          223 LASYADEFLVHGVDVEGKKLGIDDELVALLGKYSP-IPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYK  301 (316)
Q Consensus       223 ~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~-iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~  301 (316)
                      .+.|+..+  -     .-....|++.++++++.++ +||.+.+.+.+.++++++++.+ .++.+.+--+-  .+|-....
T Consensus       253 ~~~~i~~i--E-----qP~~~~d~~~~~~l~~~~~~iPIa~dE~~~~~~~~~~~i~~~-~~d~v~ik~~~--~GGitea~  322 (428)
T 3bjs_A          253 AEIQAGWL--E-----EPFACNDFASYREVAKITPLVPIAAGENHYTRFEFGQMLDAG-AVQVWQPDLSK--CGGITEGI  322 (428)
T ss_dssp             HHTTCSCE--E-----CCSCTTCHHHHHHHTTTCSSSCEEECTTCCSHHHHHHHHTTC-CEEEECCBTTT--SSCHHHHH
T ss_pred             HhcCCCEE--E-----CCCCccCHHHHHHHHHhCCCCcEEcCCCcCCHHHHHHHHHhC-CCCEEEeCccc--cCCHHHHH
Confidence            99888743  1     1122348999999998888 9999999999999999999987 36656655444  44533344


Q ss_pred             HHHHHHHhh
Q 021156          302 DVVAWHAQQ  310 (316)
Q Consensus       302 ~~~~~~~~~  310 (316)
                      ++.++++++
T Consensus       323 ~ia~~A~~~  331 (428)
T 3bjs_A          323 RIAAMASAY  331 (428)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHc
Confidence            555555554

>3ugv_A Enolase; enzyme function initiative, EFI, lyase; 2.30A {Alpha proteobacterium BAL199}

Probab=96.54  E-value=0.012  Score=56.19  Aligned_cols=138  Identities=11%  Similarity=-0.030  Sum_probs=95.4

Q ss_pred             HHHHHHHHc---CCCE--EEeCCe-eecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHH
Q 021156          145 DNSLSYIEE---GATH--VIVTSY-VFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDER  218 (316)
Q Consensus       145 e~~~~~l~~---Gad~--VVigt~-~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~  218 (316)
                      ++++++++.   |...  +=+|.. ...+    .+.++.+.+.+|+ .+.+.+|+.          .+|...   +..++
T Consensus       177 ~~a~~~~~~~~~G~~~iKlKvG~~~~~~d----~~~v~avR~a~G~-~~~l~vDaN----------~~~~~~---~A~~~  238 (390)
T 3ugv_A          177 EAVELKAEGQGTGFKGLKLRMGRDDPAVD----IETAEAVWDAVGR-DTALMVDFN----------QGLDMA---EAMHR  238 (390)
T ss_dssp             HHHHHHHTTCTTCCSEEEEECCCSSHHHH----HHHHHHHHHHHCT-TSEEEEECT----------TCCCHH---HHHHH
T ss_pred             HHHHHHHHhhhCCCcEEEEecCCCCHHHH----HHHHHHHHHHhCC-CCEEEEECC----------CCCCHH---HHHHH
Confidence            446677778   9775  445542 2233    7889999999985 456778873          356532   35678


Q ss_pred             HHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcc
Q 021156          219 VLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNL  298 (316)
Q Consensus       219 a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~  298 (316)
                      ++.+.+.++..+  -     .-....|++.++++++.+++||.+...+.+..|+.++++.+ .++.+.+--+-  .+|--
T Consensus       239 ~~~l~~~~i~~i--E-----qP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~-a~d~v~ik~~~--~GGit  308 (390)
T 3ugv_A          239 TRQIDDLGLEWI--E-----EPVVYDNFDGYAQLRHDLKTPLMIGENFYGPREMHQALQAG-ACDLVMPDFMR--IGGVS  308 (390)
T ss_dssp             HHHHTTSCCSEE--E-----CCSCTTCHHHHHHHHHHCSSCEEECTTCCSHHHHHHHHHTT-CCSEECCBHHH--HTHHH
T ss_pred             HHHHHhhCCCEE--E-----CCCCcccHHHHHHHHHhcCCCEEeCCCcCCHHHHHHHHHcC-CCCEEEeCccc--cCCHH
Confidence            888888887754  1     11222389999999998999999999999999999999988 36666665555  55544


Q ss_pred             cHHHHHHHHHhh
Q 021156          299 AYKDVVAWHAQQ  310 (316)
Q Consensus       299 ~~~~~~~~~~~~  310 (316)
                      ...++.++++++
T Consensus       309 ~~~~i~~~A~~~  320 (390)
T 3ugv_A          309 GWMRAAGVAGAW  320 (390)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc
Confidence            445555555554

>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*

Probab=96.54  E-value=0.0019  Score=61.33  Aligned_cols=84  Identities=17%  Similarity=0.137  Sum_probs=58.5

Q ss_pred             HHHHHHHHHcC-CCcceE---------EEecCCc---------------c---cHHHHHHHHH-hC-CCcEEEecCCC-H
Q 021156           96 AEFANLYKEDG-LTGGHA---------IMLGADP---------------L---SKAAAIEALH-AY-PGGLQVGGGIN-S  144 (316)
Q Consensus        96 ~e~a~~~~~~G-~~~l~l---------vDLda~~---------------~---~~~~i~~~v~-~~-~~pl~vGGGIr-~  144 (316)
                      .++++.+.++| ++++.+         +|+++..               .   ....++..++ .. .+||+..|||+ .
T Consensus       210 ~~~a~~~~~~Gg~d~I~~~NT~~~g~~idi~~~~~~~~~~~~~gGlSG~~i~p~a~~~i~~v~~~~~~ipII~~GGI~s~  289 (354)
T 4ef8_A          210 DAAAEILNEFPKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGLGGRYVLPTALANINAFYRRCPGKLIFGCGGVYTG  289 (354)
T ss_dssp             HHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCSGGGGEEEEEGGGGHHHHHHHHHHHHHHCTTSEEEEESCCCSH
T ss_pred             HHHHHHHHhCCCccEEEEecccCcceeeeccCCccccccccccCCCCCCCCchHHHHHHHHHHHhCCCCCEEEECCcCCH
Confidence            34566666787 888876         5654321               1   1122333343 45 69999999998 4


Q ss_pred             HHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHh
Q 021156          145 DNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVV  182 (316)
Q Consensus       145 e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~  182 (316)
                      +|+.+++.+||+.|.+|+.++.+|   |.+++++.+.+
T Consensus       290 ~da~~~l~aGAd~V~vgra~l~~G---P~~~~~i~~~l  324 (354)
T 4ef8_A          290 EDAFLHVLAGASMVQVGTALQEEG---PSIFERLTSEL  324 (354)
T ss_dssp             HHHHHHHHHTEEEEEECHHHHHHC---TTHHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEEhHHHHHhC---HHHHHHHHHHH
Confidence            999999999999999999998863   66666665543

>2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A

Probab=96.53  E-value=0.0082  Score=57.14  Aligned_cols=138  Identities=11%  Similarity=0.034  Sum_probs=92.4

Q ss_pred             HHHHHHHHcCCCEEEe--CC-eeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHH
Q 021156          145 DNSLSYIEEGATHVIV--TS-YVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLD  221 (316)
Q Consensus       145 e~~~~~l~~Gad~VVi--gt-~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~  221 (316)
                      +.++++.+.|.+.+=+  |. ....    +.+.++.+.+.+|+ .+.+.+|+.          .+|...   +..++++.
T Consensus       145 ~~a~~~~~~Gf~~vKik~g~~~~~~----d~e~v~avR~a~G~-d~~l~vDan----------~~~~~~---~a~~~~~~  206 (382)
T 2gdq_A          145 SNVEAQLKKGFEQIKVKIGGTSFKE----DVRHINALQHTAGS-SITMILDAN----------QSYDAA---AAFKWERY  206 (382)
T ss_dssp             HHHHHHHTTTCCEEEEECSSSCHHH----HHHHHHHHHHHHCT-TSEEEEECT----------TCCCHH---HHHTTHHH
T ss_pred             HHHHHHHHcCCCEEEEcCCCCCHHH----HHHHHHHHHHhhCC-CCEEEEECC----------CCCCHH---HHHHHHHH
Confidence            4467777889887554  32 1222    37889999888975 455778873          255422   34566777


Q ss_pred             HHHc-CCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccH
Q 021156          222 FLAS-YADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAY  300 (316)
Q Consensus       222 ~~~~-Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~  300 (316)
                      +.+. |+..+  -     .-....|++.++++++.+++||.+.+.+.+.++++++++.+ .++.+.+--+-  .+|-...
T Consensus       207 l~~~~~i~~i--E-----qP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~-~~d~v~ik~~~--~GGit~~  276 (382)
T 2gdq_A          207 FSEWTNIGWL--E-----EPLPFDQPQDYAMLRSRLSVPVAGGENMKGPAQYVPLLSQR-CLDIIQPDVMH--VNGIDEF  276 (382)
T ss_dssp             HTTCSCEEEE--E-----CCSCSSCHHHHHHHHTTCSSCEEECTTCCSHHHHHHHHHTT-CCSEECCCTTT--TTHHHHH
T ss_pred             HhhccCCeEE--E-----CCCCcccHHHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcC-CCCEEecCccc--cCCHHHH
Confidence            7776 65532  1     11223489999999998999999999999999999999988 46767665544  4443334


Q ss_pred             HHHHHHHHhh
Q 021156          301 KDVVAWHAQQ  310 (316)
Q Consensus       301 ~~~~~~~~~~  310 (316)
                      .++.++++++
T Consensus       277 ~~i~~~A~~~  286 (382)
T 2gdq_A          277 RDCLQLARYF  286 (382)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHc
Confidence            4555555554

>3r0u_A Enzyme of enolase superfamily; structural genomics, putative epimerase, PSI-biolog YORK structural genomics research consortium; HET: MSE TAR; 1.90A {Francisella philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A 3r1z_A*

Probab=96.53  E-value=0.02  Score=54.63  Aligned_cols=141  Identities=16%  Similarity=0.130  Sum_probs=96.5

Q ss_pred             HHHHHHHHcCCCE--EEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH
Q 021156          145 DNSLSYIEEGATH--VIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF  222 (316)
Q Consensus       145 e~~~~~l~~Gad~--VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~  222 (316)
                      ++++++.+.|...  +=+|.....+    .+.++.+.+.+|+ .+-+.+|..   +       +|...   +..++++.+
T Consensus       148 ~~a~~~~~~Gf~~~KlK~g~~~~~d----~~~v~avR~a~g~-~~~L~vDaN---~-------~w~~~---~A~~~~~~l  209 (379)
T 3r0u_A          148 QNIQNGVEANFTAIKVKTGADFNRD----IQLLKALDNEFSK-NIKFRFDAN---Q-------GWNLA---QTKQFIEEI  209 (379)
T ss_dssp             HHHHHHHHTTCCEEEEECSSCHHHH----HHHHHHHHHHCCT-TSEEEEECT---T-------CCCHH---HHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEeeecCCCHHHH----HHHHHHHHHhcCC-CCeEEEeCC---C-------CcCHH---HHHHHHHHH
Confidence            3567778889775  4456533344    8899999999974 456788873   3       56532   356778888


Q ss_pred             HHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHH
Q 021156          223 LASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKD  302 (316)
Q Consensus       223 ~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~  302 (316)
                      .+.+.+-..+-+     -....|++.++++++.+++||.+..-+.+..|+.++++.+ .++.+.+--+.  .+|-....+
T Consensus       210 ~~~~~~l~~iEe-----P~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~-a~d~v~~k~~~--~GGi~~~~~  281 (379)
T 3r0u_A          210 NKYSLNVEIIEQ-----PVKYYDIKAMAEITKFSNIPVVADESVFDAKDAERVIDEQ-ACNMINIKLAK--TGGILEAQK  281 (379)
T ss_dssp             HTSCCCEEEEEC-----CSCTTCHHHHHHHHHHCSSCEEESTTCSSHHHHHHHHHTT-CCSEEEECHHH--HTSHHHHHH
T ss_pred             hhcCCCcEEEEC-----CCCcccHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcC-CCCEEEECccc--cCCHHHHHH
Confidence            883333212221     1222379999999998999999999999999999999988 36777776666  666555555


Q ss_pred             HHHHHHhhc
Q 021156          303 VVAWHAQQE  311 (316)
Q Consensus       303 ~~~~~~~~~  311 (316)
                      +.++++++.
T Consensus       282 ia~~A~~~g  290 (379)
T 3r0u_A          282 IKKLADSAG  290 (379)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHcC
Confidence            666665543

>2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti}

Probab=96.52  E-value=0.01  Score=56.62  Aligned_cols=142  Identities=12%  Similarity=0.022  Sum_probs=94.1

Q ss_pred             HHHHHHHHcCCCEEEeCCe----------------eecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcc
Q 021156          145 DNSLSYIEEGATHVIVTSY----------------VFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQ  208 (316)
Q Consensus       145 e~~~~~l~~Gad~VVigt~----------------~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~  208 (316)
                      +.++++.+.|.+.+=+-..                ..++.+.+.+.++.+.+.+|+ .+-+.+|+.          .+|.
T Consensus       143 ~~a~~~~~~Gf~~vKik~g~~~~g~~~~~~~~gg~~~~~~~~~~e~v~avr~a~G~-d~~l~vD~n----------~~~~  211 (392)
T 2poz_A          143 RAVERPLKEGYGALKFYPLAQRVGSALQHVTRRSMSAEAIELAYRRVKAVRDAAGP-EIELMVDLS----------GGLT  211 (392)
T ss_dssp             HHTHHHHHTTCSEEEECCCCEEETTEEECCBTTBCCHHHHHHHHHHHHHHHHHHCT-TSEEEEECT----------TCSC
T ss_pred             HHHHHHHHcCCCEEEEecccccccccccccccCCcchhhHHHHHHHHHHHHHhcCC-CCEEEEECC----------CCCC
Confidence            4467778899987654221                001111236788888888975 455778873          2454


Q ss_pred             eecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEc
Q 021156          209 KFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVG  288 (316)
Q Consensus       209 ~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG  288 (316)
                      ..   +..++++.+.+.++..+  -+     -....|++.++++++.+++||.+.+.+.+.++++++++.+ .++.+.+-
T Consensus       212 ~~---~a~~~~~~l~~~~i~~i--E~-----P~~~~~~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~-~~d~v~ik  280 (392)
T 2poz_A          212 TD---ETIRFCRKIGELDICFV--EE-----PCDPFDNGALKVISEQIPLPIAVGERVYTRFGFRKIFELQ-ACGIIQPD  280 (392)
T ss_dssp             HH---HHHHHHHHHGGGCEEEE--EC-----CSCTTCHHHHHHHHHHCSSCEEECTTCCHHHHHHHHHTTT-CCSEECCC
T ss_pred             HH---HHHHHHHHHHhcCCCEE--EC-----CCCcccHHHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcC-CCCEEecC
Confidence            32   35677888888776532  11     1223489999999998999999999999999999999987 36767665


Q ss_pred             cchhhccCcccHHHHHHHHHhh
Q 021156          289 SALDIFGGNLAYKDVVAWHAQQ  310 (316)
Q Consensus       289 ~Al~~~~g~~~~~~~~~~~~~~  310 (316)
                      -+-  .+|-....++.++++++
T Consensus       281 ~~~--~GGit~~~~i~~~A~~~  300 (392)
T 2poz_A          281 IGT--AGGLMETKKICAMAEAY  300 (392)
T ss_dssp             TTT--SSCHHHHHHHHHHHHTT
T ss_pred             ccc--cCCHHHHHHHHHHHHHc
Confidence            444  44543444555555554

>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}

Probab=96.52  E-value=0.0036  Score=54.05  Aligned_cols=74  Identities=12%  Similarity=0.016  Sum_probs=49.3

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEe-c---CC-cccHHHHHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecC
Q 021156           93 KSAAEFANLYKEDGLTGGHAIML-G---AD-PLSKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNN  167 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDL-d---a~-~~~~~~i~~~v~~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~  167 (316)
                      ++|.+.++.+.+.|++.+.+.-- +   .+ ......+.+.... +.|+.+.|||+.+++..++++||+.+++|+..++.
T Consensus       114 ~~p~~~~~~~~~~g~d~v~~~~~~~~~~~g~~~~~~~i~~~~~~-~~pi~v~GGI~~~~~~~~~~aGad~vvvGsaI~~~  192 (207)
T 3ajx_A          114 EDKATRAQEVRALGAKFVEMHAGLDEQAKPGFDLNGLLAAGEKA-RVPFSVAGGVKVATIPAVQKAGAEVAVAGGAIYGA  192 (207)
T ss_dssp             SSHHHHHHHHHHTTCSEEEEECCHHHHTSTTCCTHHHHHHHHHH-TSCEEEESSCCGGGHHHHHHTTCSEEEESHHHHTS
T ss_pred             CChHHHHHHHHHhCCCEEEEEecccccccCCCchHHHHHHhhCC-CCCEEEECCcCHHHHHHHHHcCCCEEEEeeeccCC
Confidence            37877666776777653312110 1   11 1111333333332 68999999999999999999999999999998874

>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A*

Probab=96.51  E-value=0.0029  Score=74.35  Aligned_cols=164  Identities=15%  Similarity=0.134  Sum_probs=103.2

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCc-ccHHHHHHHH---H-hC--CCcEEEecCC-CH----------HHHHHHHHcC-
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADP-LSKAAAIEAL---H-AY--PGGLQVGGGI-NS----------DNSLSYIEEG-  154 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~-~~~~~i~~~v---~-~~--~~pl~vGGGI-r~----------e~~~~~l~~G-  154 (316)
                      +| ++|....++|..    --|.+.. .+.+.+.+.+   + ..  +.|+.|.=.. +.          +-++.+.+.| 
T Consensus       441 ~~-~LaaAVs~AGgl----G~l~~~g~~~~~~l~~~i~~~r~~~~~~~p~~vNl~~~~p~~~~~~~g~~~~~~~~~~~g~  515 (3089)
T 3zen_D          441 DA-KIVAAAANAGHW----AELAGGGQVTEQIFNDRIAELETLLEPGRAIQFNTLFLDPYLWKLQVGGKRLVQRARQSGA  515 (3089)
T ss_dssp             SH-HHHHHHHHTTCE----EEECSTTCCSHHHHHHHHHHHHHHSCTTCCCEEEEECSCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CH-HHHHHHHhCCCc----eeecCCCCCCHHHHHHHHHHHHHhcCCCCceeechhhcChhhhhhccCHHHHHHHHHHcCC
Confidence            45 488888888833    3344332 2333333333   3 24  4555554333 22          2377888899 


Q ss_pred             -CCEEEeCCeeecCCCCCHHHHHHHHHHh---cCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCC--
Q 021156          155 -ATHVIVTSYVFNNGQMDLERLKDLVRVV---GKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYAD--  228 (316)
Q Consensus       155 -ad~VVigt~~~~~~~~~~eli~ei~~~~---G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~--  228 (316)
                       ++-|+++.- ..+    +|...++.+.+   |-  .++.+.+                    ...+.++++.+.|++  
T Consensus       516 ~vdgv~~~aG-~P~----~ee~~~~i~~l~~~Gi--~~i~~~~--------------------~t~~~a~~~~~i~~d~~  568 (3089)
T 3zen_D          516 PIDGLVVSAG-IPD----LEEAVDIIDELNEVGI--SHVVFKP--------------------GTVEQIRSVIRIAAEVP  568 (3089)
T ss_dssp             SCCEEEEESS-CCC----HHHHHHHHTSTTHHHH--CSEEECC--------------------CSHHHHHHHHHHHTTST
T ss_pred             CceEEEEeCC-CCc----hhHhHHHHHHHHHcCC--EEEEEeC--------------------CCHHHHHHHHHhhhhcC
Confidence             777888642 221    34444444443   31  1222221                    113556667777777  


Q ss_pred             ----EEEEeecCCccccCCCCHH-HH----HHHhhcCCCcEEEEeCCCCHHHHHHHH-----------HhCCCcCEEEEc
Q 021156          229 ----EFLVHGVDVEGKKLGIDDE-LV----ALLGKYSPIPVTYAGGVTTMADLEKIK-----------VAGIGRVDVTVG  288 (316)
Q Consensus       229 ----~ilvtdi~~dG~~~G~d~e-li----~~l~~~~~iPVIasGGI~s~eDi~~l~-----------~~G~g~~gVivG  288 (316)
                          .+++...+.-|+....++. ++    .++++.+++||+++|||.+.+++..++           .+|  ++||++|
T Consensus       569 ~~~y~vv~~G~eaGGH~g~~~~~~ll~~~~~~ir~~~~iPViaaGGI~d~~~vaaal~g~ws~~~~~p~lG--AdGV~vG  646 (3089)
T 3zen_D          569 TKPVIVHIEGGRAGGHHSWEDLDDLLLATYSELRSRSNITICVGGGIGTPERSAEYLSGRWAEVHGYPLMP--IDGILVG  646 (3089)
T ss_dssp             TSCEEEEECCSSSSEECCSCCHHHHHHHHHHHHTTCTTEEEEEESSCCCTTTTHHHHHTGGGGTTTCCCCC--CSEEECS
T ss_pred             CCcEEEEEeCCCcCCCCCcccHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHhccccccccCccCCC--CCEEEec
Confidence                6778888876665444654 55    777888899999999999999999999           777  9999999


Q ss_pred             cch
Q 021156          289 SAL  291 (316)
Q Consensus       289 ~Al  291 (316)
                      +++
T Consensus       647 Trf  649 (3089)
T 3zen_D          647 TAA  649 (3089)
T ss_dssp             STT
T ss_pred             HHH
Confidence            998

>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*

Probab=96.49  E-value=0.004  Score=54.07  Aligned_cols=71  Identities=15%  Similarity=0.145  Sum_probs=50.1

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCC-cccHHHHHHHHHhCC--CcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecC
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGAD-PLSKAAAIEALHAYP--GGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNN  167 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~-~~~~~~i~~~v~~~~--~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~  167 (316)
                      .+|.++. ...+.|++.+.+   ..+ ....+.+.+..+..+  +|+++.|||+.+++.+++++||+.|++||.+++.
T Consensus       109 ~t~~e~~-~a~~~G~d~v~v---~~t~~~g~~~~~~l~~~~~~~ipvia~GGI~~~~i~~~~~~Ga~gv~vGsai~~~  182 (212)
T 2v82_A          109 ATATEAF-TALEAGAQALKI---FPSSAFGPQYIKALKAVLPSDIAVFAVGGVTPENLAQWIDAGCAGAGLGSDLYRA  182 (212)
T ss_dssp             CSHHHHH-HHHHTTCSEEEE---TTHHHHCHHHHHHHHTTSCTTCEEEEESSCCTTTHHHHHHHTCSEEEECTTTCCT
T ss_pred             CCHHHHH-HHHHCCCCEEEE---ecCCCCCHHHHHHHHHhccCCCeEEEeCCCCHHHHHHHHHcCCCEEEEChHHhCC
Confidence            3677654 345678886553   211 112334444444455  9999999999899999999999999999998863

>3vcn_A Mannonate dehydratase; enolase, magnesium binding site, enzyme function initiative, lyase; 1.45A {Caulobacter crescentus} PDB: 4gme_A* 4fi4_A 3thu_A

Probab=96.48  E-value=0.01  Score=57.46  Aligned_cols=116  Identities=10%  Similarity=-0.011  Sum_probs=83.6

Q ss_pred             CHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHH
Q 021156          171 DLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVA  250 (316)
Q Consensus       171 ~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~  250 (316)
                      +.+.++.+.+.+|++ +.+.+|+.          .+|...   +..++++.+.+.|+..+  -.     -....|++.++
T Consensus       213 d~e~v~avR~a~G~d-~~l~vDaN----------~~~~~~---~A~~~~~~L~~~~i~~i--Eq-----P~~~~d~~~~~  271 (425)
T 3vcn_A          213 VPKLFERAREVLGWD-VHLLHDVH----------HRLTPI---EAARLGKDLEPYRLFWL--ED-----SVPAENQAGFR  271 (425)
T ss_dssp             THHHHHHHHHHHCSS-SEEEEECT----------TCCCHH---HHHHHHHHHGGGCCSEE--EC-----CSCCSSTTHHH
T ss_pred             HHHHHHHHHHHcCCC-CEEEEECC----------CCCCHH---HHHHHHHHHHhcCCCEE--EC-----CCChhhHHHHH
Confidence            478999999999854 55778873          356532   46678889999888754  11     11223788899


Q ss_pred             HHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHHhh
Q 021156          251 LLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQQ  310 (316)
Q Consensus       251 ~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~~~  310 (316)
                      ++++.+++||.+.+.+.+.+++.++++.+ .++.+.+--+-  .+|-....++.++++++
T Consensus       272 ~l~~~~~iPIa~dE~~~~~~~~~~~i~~~-a~d~v~~k~~~--~GGit~~~~ia~~A~~~  328 (425)
T 3vcn_A          272 LIRQHTTTPLAVGEIFAHVWDAKQLIEEQ-LIDYLRATVLH--AGGITNLKKIAAFADLH  328 (425)
T ss_dssp             HHHHHCCSCEEECTTCCSGGGTHHHHHTT-CCSEECCCTTT--TTHHHHHHHHHHHHGGG
T ss_pred             HHHhcCCCCEEeCCCcCCHHHHHHHHHcC-CCCeEecChhh--cCCHHHHHHHHHHHHHc
Confidence            99999999999999999999999999988 36767666555  55544455555555554

>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*

Probab=96.48  E-value=0.0038  Score=58.40  Aligned_cols=72  Identities=17%  Similarity=0.106  Sum_probs=51.4

Q ss_pred             CHHHHHHHHHHcCCCcceEEE-----------------------ecCCcccHHHHHHHHHhC-CCcEEEecCCCH-HHHH
Q 021156           94 SAAEFANLYKEDGLTGGHAIM-----------------------LGADPLSKAAAIEALHAY-PGGLQVGGGINS-DNSL  148 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvD-----------------------Lda~~~~~~~i~~~v~~~-~~pl~vGGGIr~-e~~~  148 (316)
                      +| +.|+...++|++.+.+-.                       ++.+.+....+.++.+.+ ++|++..|||++ +|+.
T Consensus       194 ~~-e~a~~~~~~G~d~I~vs~~ggt~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~v~~~~~~ipvia~GGI~~~~d~~  272 (332)
T 1vcf_A          194 SR-EAALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLPHLPLVASGGVYTGTDGA  272 (332)
T ss_dssp             CH-HHHHHHTTSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHCSSSCEEEESSCCSHHHHH
T ss_pred             CH-HHHHHHHHcCCCEEEeCCCCCCcchhHHHhhccccchhhhHhhccccHHHHHHHHHHhcCCCeEEEECCCCCHHHHH
Confidence            34 467888888988775522                       111112233334444456 799999999995 9999


Q ss_pred             HHHHcCCCEEEeCCeeec
Q 021156          149 SYIEEGATHVIVTSYVFN  166 (316)
Q Consensus       149 ~~l~~Gad~VVigt~~~~  166 (316)
                      +++.+|||.|.+|+.++.
T Consensus       273 kal~~GAd~V~igr~~l~  290 (332)
T 1vcf_A          273 KALALGADLLAVARPLLR  290 (332)
T ss_dssp             HHHHHTCSEEEECGGGHH
T ss_pred             HHHHhCCChHhhhHHHHH
Confidence            999999999999998874

>3tji_A Mandelate racemase/muconate lactonizing enzyme, N domain protein; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.80A {Enterobacter SP}

Probab=96.48  E-value=0.0089  Score=57.88  Aligned_cols=143  Identities=11%  Similarity=0.019  Sum_probs=97.5

Q ss_pred             HHHHHHHHcCCCEE--EeCCeeecC-----------C---------CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEE
Q 021156          145 DNSLSYIEEGATHV--IVTSYVFNN-----------G---------QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAI  202 (316)
Q Consensus       145 e~~~~~l~~Gad~V--Vigt~~~~~-----------~---------~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v  202 (316)
                      ++++++.+.|...+  =+|......           +         +.+.+.++.+.+.+|+ .+-+.+|+.        
T Consensus       160 ~~a~~~~~~G~~~iKlKvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~e~v~avR~avG~-d~~L~vDaN--------  230 (422)
T 3tji_A          160 ASVDALIAQGYRHIRCQLGFYGGTPSALHAPDNPTPGAWFDQQEYMSNTVEMFHALREKYGW-KLHILHDVH--------  230 (422)
T ss_dssp             HHHHHHHHTTCSEEEEEESCCCBCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHCS-SSEEEEECT--------
T ss_pred             HHHHHHHHcCCCEEEEeeccCCcccccccccccccccccccchhHHHHHHHHHHHHHHHcCC-CCEEEEECC--------
Confidence            45678888998854  345421100           0         0126778889899985 456778873        


Q ss_pred             EeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCc
Q 021156          203 VTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGR  282 (316)
Q Consensus       203 ~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~  282 (316)
                        .+|...   +..++++.+.+.|+..+  -.     -....|++.++++++.+++||.+.+.+.+.+++.++++.+ .+
T Consensus       231 --~~~~~~---~A~~~~~~Le~~~i~~i--Eq-----P~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~ll~~g-a~  297 (422)
T 3tji_A          231 --ERLFPQ---QAVQLAKQLEPFQPYFI--ED-----ILPPQQSAWLEQVRQQSCVPLALGELFNNPAEWHDLIVNR-RI  297 (422)
T ss_dssp             --TCSCHH---HHHHHHHHHGGGCCSEE--EC-----CSCGGGGGGHHHHHHHCCCCEEECTTCCSGGGTHHHHHTT-CC
T ss_pred             --CCCCHH---HHHHHHHHHHhhCCCeE--EC-----CCChhhHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHhcC-CC
Confidence              356532   46678888988887754  11     1122267888999998999999999999999999999998 47


Q ss_pred             CEEEEccchhhccCcccHHHHHHHHHhhc
Q 021156          283 VDVTVGSALDIFGGNLAYKDVVAWHAQQE  311 (316)
Q Consensus       283 ~gVivG~Al~~~~g~~~~~~~~~~~~~~~  311 (316)
                      +.+.+--+-  .+|-....++.++++++.
T Consensus       298 d~v~~k~~~--~GGit~~~kia~lA~a~g  324 (422)
T 3tji_A          298 DFIRCHVSQ--IGGITPALKLAHLCQAFG  324 (422)
T ss_dssp             SEECCCGGG--GTSHHHHHHHHHHHHHTT
T ss_pred             CEEecCccc--cCCHHHHHHHHHHHHHcC
Confidence            777776666  666555556666665543

>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G*

Probab=96.48  E-value=0.0046  Score=70.28  Aligned_cols=118  Identities=12%  Similarity=0.101  Sum_probs=81.0

Q ss_pred             HHHHHHcCCCE--EEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHH
Q 021156          147 SLSYIEEGATH--VIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLA  224 (316)
Q Consensus       147 ~~~~l~~Gad~--VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~  224 (316)
                      ++.+++.|+..  |++|.-.-.     ++...++.+.+|- +++.   .+  -             +.......+....+
T Consensus       666 ~~~~~~~gv~i~~v~~~ag~p~-----~~~~~~~i~~lG~-~vi~---~~--~-------------~~~~a~~~~~~~~~  721 (2051)
T 2uv8_G          666 IKELRSKGYPIQFLTIGAGVPS-----LEVASEYIETLGL-KYLG---LK--P-------------GSIDAISQVINIAK  721 (2051)
T ss_dssp             HHHHHHTTCSEEEEEEESSCCC-----HHHHHHHHHHSCC-SCEE---EC--C-------------CSHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCcceEEecCCCCc-----hhhHHHHHHHcCC-EEEE---ec--C-------------chHHHHHHHHHHHH
Confidence            67778889887  776553211     4555566666652 2211   11  1             11234567788889


Q ss_pred             cCCCEE---EEeecCCccccCCC-C-----HHHHHHHhhcCCCcEEEEeCCCCHHHHHHHH-----------HhCCCcCE
Q 021156          225 SYADEF---LVHGVDVEGKKLGI-D-----DELVALLGKYSPIPVTYAGGVTTMADLEKIK-----------VAGIGRVD  284 (316)
Q Consensus       225 ~Ga~~i---lvtdi~~dG~~~G~-d-----~eli~~l~~~~~iPVIasGGI~s~eDi~~l~-----------~~G~g~~g  284 (316)
                      .|++.+   .+++-..-|+. |. |     +.++.++++.++||||++|||.+-+++..++           .+|  ++|
T Consensus       722 ~g~d~~ii~~~~G~eaGGH~-g~~d~~~~~l~l~~~v~~~~~ipviaaGGi~dg~~~~aaL~g~w~~~~g~~~lg--adG  798 (2051)
T 2uv8_G          722 AHPNFPIALQWTGGRGGGHH-SFEDAHTPMLQMYSKIRRHPNIMLIFGSGFGSADDTYPYLTGEWSTKFDYPPMP--FDG  798 (2051)
T ss_dssp             HSTTSCEEEEECCSSCSEEC-CSCCSSHHHHHHHHHHTTCTTBCCEEESSCCSHHHHTHHHHTCGGGTTTCCCCC--CSC
T ss_pred             hCCCceeEEEEEccCcCCCC-CcccccccHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHccccccccCccCCC--Cce
Confidence            999984   34555555553 43 1     2357888888999999999999999999999           577  999


Q ss_pred             EEEccch
Q 021156          285 VTVGSAL  291 (316)
Q Consensus       285 VivG~Al  291 (316)
                      |.+|+.+
T Consensus       799 v~~GTrf  805 (2051)
T 2uv8_G          799 FLFGSRV  805 (2051)
T ss_dssp             EECSGGG
T ss_pred             eeechHH
Confidence            9999988

>1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} PDB: 2chr_A

Probab=96.47  E-value=0.02  Score=54.21  Aligned_cols=138  Identities=13%  Similarity=0.140  Sum_probs=96.6

Q ss_pred             HHHHHHHH-cCCCE--EEeCCe-eecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHH
Q 021156          145 DNSLSYIE-EGATH--VIVTSY-VFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVL  220 (316)
Q Consensus       145 e~~~~~l~-~Gad~--VVigt~-~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~  220 (316)
                      +++.++++ .|...  +=+|.. ...    +.+.++.+.+.+|+ .+-+.+|+.          .+|..   .+..++++
T Consensus       148 ~~~~~~~~~~G~~~~KiKvg~~~~~~----d~~~v~avR~~~g~-~~~l~vDan----------~~~~~---~~a~~~~~  209 (370)
T 1chr_A          148 DSAVEMIERRRHNRFKVKLGFRSPQD----DLIHMEALSNSLGS-KAYLRVDVN----------QAWDE---QVASVYIP  209 (370)
T ss_dssp             HHHHHHHHTTCCCEEEEECSSSCSHH----HHHHHHHHHHHSST-TCCEEEECT----------TCCCT---THHHHHTH
T ss_pred             HHHHHHHHHCCCCEEEEecCCCCHHH----HHHHHHHHHHhcCC-CCEEEEECC----------CCCCH---HHHHHHHH
Confidence            34556666 78774  556653 233    38899999999974 455778873          35653   24667888


Q ss_pred             HHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccH
Q 021156          221 DFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAY  300 (316)
Q Consensus       221 ~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~  300 (316)
                      .+.+.|+..+  -     .-....|++.++++++.+++||.+..-+.+.+|+.++++.+ .++.+.+--+-  .+|-...
T Consensus       210 ~l~~~~i~~i--E-----qP~~~~~~~~~~~l~~~~~iPia~dE~~~~~~~~~~~~~~~-~~d~v~~k~~~--~GGit~~  279 (370)
T 1chr_A          210 ELEALGVELI--E-----QPVGRENTQALRRLSDNNRVAIMADESLSTLASAFDLARDR-SVDVFSLKLCN--MGGVSAT  279 (370)
T ss_dssp             HHHTTTEEEE--E-----CCSCTTCHHHHHHHHHHSCSEEEESSSCCSHHHHHHHHTTT-SCSEEEECTTT--SCSHHHH
T ss_pred             HHHhcCCCEE--E-----CCCCcccHHHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHcC-CCCEEEECccc--cCCHHHH
Confidence            8988876533  1     12233488999999998999999999999999999999987 47878887666  6664445


Q ss_pred             HHHHHHHHhh
Q 021156          301 KDVVAWHAQQ  310 (316)
Q Consensus       301 ~~~~~~~~~~  310 (316)
                      .++.++++++
T Consensus       280 ~~i~~~A~~~  289 (370)
T 1chr_A          280 QKIAAVAEAS  289 (370)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHc
Confidence            5555555554

>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*

Probab=96.46  E-value=0.0027  Score=60.68  Aligned_cols=71  Identities=13%  Similarity=0.108  Sum_probs=52.9

Q ss_pred             HHHHHHHHcCCCcceEEE-----ecCCcccHHHHHHHHHhCCCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeeecC
Q 021156           97 EFANLYKEDGLTGGHAIM-----LGADPLSKAAAIEALHAYPGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFNN  167 (316)
Q Consensus        97 e~a~~~~~~G~~~l~lvD-----Lda~~~~~~~i~~~v~~~~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~~~  167 (316)
                      +.|+...++|++.+.+-.     +|........+.++.+.++.|++..|||++ +|+.+++.+||+-|.+|+.++..
T Consensus       237 e~a~~a~~aGad~I~vs~~gg~~~d~~~~~~~~l~~v~~~~~~pVia~GGI~~~~dv~kal~~GAdaV~iGr~~l~~  313 (380)
T 1p4c_A          237 EDADRCIAEGADGVILSNHGGRQLDCAISPMEVLAQSVAKTGKPVLIDSGFRRGSDIVKALALGAEAVLLGRATLYG  313 (380)
T ss_dssp             HHHHHHHHTTCSEEEECCGGGTSCTTCCCGGGTHHHHHHHHCSCEEECSSCCSHHHHHHHHHTTCSCEEESHHHHHH
T ss_pred             HHHHHHHHcCCCEEEEcCCCCCcCCCCcCHHHHHHHHHHHcCCeEEEECCCCCHHHHHHHHHhCCcHhhehHHHHHH
Confidence            478888899999877732     112223334444544556789999999985 99999999999999999988753

>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}

Probab=96.46  E-value=0.0057  Score=55.30  Aligned_cols=72  Identities=13%  Similarity=0.002  Sum_probs=50.5

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCC---c-c---cHHHHHHHHHh-CCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCee
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGAD---P-L---SKAAAIEALHA-YPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYV  164 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~---~-~---~~~~i~~~v~~-~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~  164 (316)
                      +|.+.++...+.+-..+|++...+.   . .   .....++.+++ .+.|+.+|+||+ .++++++.+ +||-||+||++
T Consensus       152 t~~eRi~~ia~~a~gFiY~Vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGfGIst~e~a~~~~~-~ADGVIVGSAi  230 (252)
T 3tha_A          152 TPKERVKKLVKHAKGFIYLLASIGITGTKSVEEAILQDKVKEIRSFTNLPIFVGFGIQNNQDVKRMRK-VADGVIVGTSI  230 (252)
T ss_dssp             SCHHHHHHHHTTCCSCEEEECCSCSSSCSHHHHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHTT-TSSEEEECHHH
T ss_pred             CcHHHHHHHHHhCCCeEEEEecCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEcCcCCHHHHHHHHh-cCCEEEECHHH
Confidence            4556777777765555677765442   1 1   12334455554 579999999998 599998876 69999999998


Q ss_pred             ec
Q 021156          165 FN  166 (316)
Q Consensus       165 ~~  166 (316)
                      .+
T Consensus       231 Vk  232 (252)
T 3tha_A          231 VK  232 (252)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A

Probab=96.45  E-value=0.008  Score=55.64  Aligned_cols=70  Identities=9%  Similarity=-0.085  Sum_probs=56.6

Q ss_pred             CHHHHHHHHHHcCCCEEEEe-----ecCCcc-ccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEE
Q 021156          214 YLDERVLDFLASYADEFLVH-----GVDVEG-KKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDV  285 (316)
Q Consensus       214 ~~~e~a~~~~~~Ga~~ilvt-----di~~dG-~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gV  285 (316)
                      ++.+.|+.+++.|++++.+.     |+...| ...+.+++.++++++.+++||++-+++...+++..+...|  ++.|
T Consensus        29 ~~~e~A~~ye~~GA~~lsvLe~~~~Di~~~~g~~R~~~~~~i~~i~~~v~iPvl~k~~i~~ide~qil~aaG--AD~I  104 (297)
T 4adt_A           29 KNVEQAKIAEKAGAIGVMILENIPSELRNTDGVARSVDPLKIEEIRKCISINVLAKVRIGHFVEAQILEELK--VDML  104 (297)
T ss_dssp             SSHHHHHHHHHHTCSEEEECCCCC-----CCCCCCCCCHHHHHHHHTTCCSEEEEEEETTCHHHHHHHHHTT--CSEE
T ss_pred             CcHHHHHHHHHcCCCEEEEecCCCCcchhcCCcccCCCHHHHHHHHHhcCCCEEEeccCCcHHHHHHHHHcC--CCEE
Confidence            34589999999999998754     555444 3556699999999999999999999999999999999988  7777

>3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A*

Probab=96.45  E-value=0.012  Score=55.87  Aligned_cols=139  Identities=17%  Similarity=0.132  Sum_probs=92.9

Q ss_pred             HHHHHHHHc-CCCEE--EeCCe-eecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHH
Q 021156          145 DNSLSYIEE-GATHV--IVTSY-VFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVL  220 (316)
Q Consensus       145 e~~~~~l~~-Gad~V--Vigt~-~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~  220 (316)
                      ++++++.+. |...+  =+|.. ...+    .+.++.+.+.+|+ .+.+.+|..          .+|...   +..++++
T Consensus       157 ~~a~~~~~~~G~~~~K~Kvg~~~~~~d----~~~v~avR~~~g~-~~~l~vDan----------~~~~~~---~a~~~~~  218 (372)
T 3tj4_A          157 AGSARAVEEDGFTRLKIKVGHDDPNID----IARLTAVRERVDS-AVRIAIDGN----------GKWDLP---TCQRFCA  218 (372)
T ss_dssp             HHHHHHHHTTCCCEEEEECCCSSHHHH----HHHHHHHHHHSCT-TCEEEEECT----------TCCCHH---HHHHHHH
T ss_pred             HHHHHHHHccCCCEEEEcCCCCCHHHH----HHHHHHHHHHcCC-CCcEEeeCC----------CCCCHH---HHHHHHH
Confidence            446677888 98854  44532 2233    7889999999975 456788873          356421   3456677


Q ss_pred             HHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccH
Q 021156          221 DFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAY  300 (316)
Q Consensus       221 ~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~  300 (316)
                      .+.+.++..+  -     .-....|++.++++++.+++||.+...+.+.+|+.++++.+ .++.+.+--+-  .+|-...
T Consensus       219 ~l~~~~i~~i--E-----qP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~-~~d~v~~k~~~--~GGit~~  288 (372)
T 3tj4_A          219 AAKDLDIYWF--E-----EPLWYDDVTSHARLARNTSIPIALGEQLYTVDAFRSFIDAG-AVAYVQPDVTR--LGGITEY  288 (372)
T ss_dssp             HTTTSCEEEE--E-----SCSCTTCHHHHHHHHHHCSSCEEECTTCCSHHHHHHHHHTT-CCSEECCCTTT--TTHHHHH
T ss_pred             HHhhcCCCEE--E-----CCCCchhHHHHHHHHhhcCCCEEeCCCccCHHHHHHHHHcC-CCCEEEeCccc--cCCHHHH
Confidence            7766654432  1     11223489999999998999999999999999999999988 36766665544  4554444


Q ss_pred             HHHHHHHHhhc
Q 021156          301 KDVVAWHAQQE  311 (316)
Q Consensus       301 ~~~~~~~~~~~  311 (316)
                      .++.++++++.
T Consensus       289 ~~ia~~A~~~g  299 (372)
T 3tj4_A          289 IQVADLALAHR  299 (372)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHcC
Confidence            55555555543

>2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiati 2; 2.00A {Salmonella typhimurium}

Probab=96.43  E-value=0.014  Score=55.90  Aligned_cols=142  Identities=9%  Similarity=0.001  Sum_probs=94.5

Q ss_pred             HHHHHHHHcCCCEEEeCCe-----ee------------cCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCc
Q 021156          145 DNSLSYIEEGATHVIVTSY-----VF------------NNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRW  207 (316)
Q Consensus       145 e~~~~~l~~Gad~VVigt~-----~~------------~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw  207 (316)
                      +.++++.+.|.+.+=+-..     -.            ++.+.+.+.++.+.+.+|+ .+-+.+|+.   +       +|
T Consensus       158 ~~a~~~~~~Gf~~vKik~~~~~~~G~~~~s~~~~~~~~~~~~~~~e~v~avR~a~G~-d~~l~vDan---~-------~~  226 (407)
T 2o56_A          158 QAALTAVSEGYDAIKVDTVAMDRHGNWNQQNLNGPLTDKILRLGYDRMAAIRDAVGP-DVDIIAEMH---A-------FT  226 (407)
T ss_dssp             HHHHHHHHTTCSEEEECCSSBCTTSCBSCSCCCSSCCHHHHHHHHHHHHHHHHHHCT-TSEEEEECT---T-------CS
T ss_pred             HHHHHHHHcCCCEEEEcccccCCcCccccCcccCCCchhHHHHHHHHHHHHHHhcCC-CCEEEEECC---C-------CC
Confidence            4577788899998755321     00            0101236788888888975 456778873   2       45


Q ss_pred             ceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEE
Q 021156          208 QKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTV  287 (316)
Q Consensus       208 ~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gViv  287 (316)
                      ...   +..++++.+++.++..+  -     .-....|++.++++++.+++||.+.+.+.+.++++++++.+ .++.+.+
T Consensus       227 ~~~---~a~~~~~~l~~~~i~~i--E-----~P~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~-~~d~v~i  295 (407)
T 2o56_A          227 DTT---SAIQFGRMIEELGIFYY--E-----EPVMPLNPAQMKQVADKVNIPLAAGERIYWRWGYRPFLENG-SLSVIQP  295 (407)
T ss_dssp             CHH---HHHHHHHHHGGGCCSCE--E-----CSSCSSSHHHHHHHHHHCCSCEEECTTCCHHHHHHHHHHTT-CCSEECC
T ss_pred             CHH---HHHHHHHHHHhcCCCEE--e-----CCCChhhHHHHHHHHHhCCCCEEeCCCcCCHHHHHHHHHcC-CCCEEec
Confidence            421   35678888888887743  1     11233489999999998999999999999999999999988 3666666


Q ss_pred             ccchhhccCcccHHHHHHHHHhh
Q 021156          288 GSALDIFGGNLAYKDVVAWHAQQ  310 (316)
Q Consensus       288 G~Al~~~~g~~~~~~~~~~~~~~  310 (316)
                      --.-  .+|-....++.++++++
T Consensus       296 k~~~--~GGite~~~i~~~A~~~  316 (407)
T 2o56_A          296 DICT--CGGITEVKKICDMAHVY  316 (407)
T ss_dssp             CTTT--TTHHHHHHHHHHHHHTT
T ss_pred             Cccc--cCCHHHHHHHHHHHHHc
Confidence            5444  44433344555555543

>3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer 9468A, muconate lactonizing enzyme, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} PDB: 3i6t_A

Probab=96.40  E-value=0.03  Score=53.34  Aligned_cols=139  Identities=17%  Similarity=0.068  Sum_probs=97.2

Q ss_pred             HHHHHHHHcCCCEE--EeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH
Q 021156          145 DNSLSYIEEGATHV--IVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF  222 (316)
Q Consensus       145 e~~~~~l~~Gad~V--Vigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~  222 (316)
                      ++++++++.|...+  =+|....+.   +.+.++.+.+.+ + .+-+.+|+.          .+|...   +..++++.+
T Consensus       154 ~~a~~~~~~G~~~~K~Kvg~~~~~~---d~~~v~avR~a~-~-~~~l~vDan----------~~~~~~---~A~~~~~~L  215 (385)
T 3i6e_A          154 ALMERLRADGVGLIKLKTGFRDHAF---DIMRLELIARDF-P-EFRVRVDYN----------QGLEID---EAVPRVLDV  215 (385)
T ss_dssp             HHHHHHHHHTCCEEEEECSSSCHHH---HHHHHHHHHHHC-T-TSEEEEECT----------TCCCGG---GHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEEecCCCCHHH---HHHHHHHHHHhC-C-CCeEEEECC----------CCCCHH---HHHHHHHHH
Confidence            34677788897754  455532211   378888888888 3 456778873          356532   467889999


Q ss_pred             HHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHH
Q 021156          223 LASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKD  302 (316)
Q Consensus       223 ~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~  302 (316)
                      .+.++..+  -    + =....|++.++++++.+++||.+..-+.+.+|+.++++.+ .++.+.+--+-  .+|-....+
T Consensus       216 ~~~~i~~i--E----q-P~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~~~~~-~~d~v~~k~~~--~GGit~~~~  285 (385)
T 3i6e_A          216 AQFQPDFI--E----Q-PVRAHHFELMARLRGLTDVPLLADESVYGPEDMVRAAHEG-ICDGVSIKIMK--SGGLTRAQT  285 (385)
T ss_dssp             HTTCCSCE--E----C-CSCTTCHHHHHHHHTTCSSCEEESTTCCSHHHHHHHHHHT-CCSEEEECHHH--HTSHHHHHH
T ss_pred             HhcCCCEE--E----C-CCCcccHHHHHHHHHhCCCCEEEeCCcCCHHHHHHHHHcC-CCCEEEecccc--cCCHHHHHH
Confidence            99887754  1    1 1223389999999998999999999999999999999988 47777776666  666545555


Q ss_pred             HHHHHHhhc
Q 021156          303 VVAWHAQQE  311 (316)
Q Consensus       303 ~~~~~~~~~  311 (316)
                      +.++++++.
T Consensus       286 i~~~A~~~g  294 (385)
T 3i6e_A          286 VARIAAAHG  294 (385)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHcC
Confidence            666665543

>2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A*

Probab=96.40  E-value=0.015  Score=55.82  Aligned_cols=142  Identities=8%  Similarity=0.030  Sum_probs=93.8

Q ss_pred             HHHHHHHHcCCCEEEeCCe-----ee-----------------cCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEE
Q 021156          145 DNSLSYIEEGATHVIVTSY-----VF-----------------NNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAI  202 (316)
Q Consensus       145 e~~~~~l~~Gad~VVigt~-----~~-----------------~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v  202 (316)
                      +.++++.+.|.+.+=+-..     -.                 ++.+.+.+.++.+.+.+|+ .+-+.+|+.        
T Consensus       156 ~~a~~~~~~Gf~~vKik~~~~~~~G~~~~~~~~~~~~GG~~~~~~~~~~~e~v~avR~a~G~-d~~l~vDan--------  226 (410)
T 2gl5_A          156 EAARAALDDGYDAIKVDPLEIDRNGDDCVFQNRNRNYSGLLLADQLKMGEARIAAMREAMGD-DADIIVEIH--------  226 (410)
T ss_dssp             HHHHHHHHTTCSEEEECSSSBCTTSCBTTTSSCCGGGGSCCCHHHHHHHHHHHHHHHHHHCS-SSEEEEECT--------
T ss_pred             HHHHHHHHcCCCEEEEeccccCCcccccccccccccccCccchhHHHHHHHHHHHHHHhcCC-CCEEEEECC--------
Confidence            5577888899998754321     00                 0101136788888888975 455678873        


Q ss_pred             EeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCc
Q 021156          203 VTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGR  282 (316)
Q Consensus       203 ~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~  282 (316)
                        .+|...   +..++++.+++.++..+  -+     -....|++.++++++.+++||.+.+.+.+.++++++++.+ .+
T Consensus       227 --~~~~~~---~ai~~~~~l~~~~i~~i--E~-----P~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~-~~  293 (410)
T 2gl5_A          227 --SLLGTN---SAIQFAKAIEKYRIFLY--EE-----PIHPLNSDNMQKVSRSTTIPIATGERSYTRWGYRELLEKQ-SI  293 (410)
T ss_dssp             --TCSCHH---HHHHHHHHHGGGCEEEE--EC-----SSCSSCHHHHHHHHHHCSSCEEECTTCCTTHHHHHHHHTT-CC
T ss_pred             --CCCCHH---HHHHHHHHHHhcCCCeE--EC-----CCChhhHHHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcC-CC
Confidence              245421   35677888888776532  21     1233489999999998999999999999999999999988 36


Q ss_pred             CEEEEccchhhccCcccHHHHHHHHHhh
Q 021156          283 VDVTVGSALDIFGGNLAYKDVVAWHAQQ  310 (316)
Q Consensus       283 ~gVivG~Al~~~~g~~~~~~~~~~~~~~  310 (316)
                      +.+.+--.-  .+|-....++.++++++
T Consensus       294 d~v~ik~~~--~GGit~~~~ia~~A~~~  319 (410)
T 2gl5_A          294 AVAQPDLCL--CGGITEGKKICDYANIY  319 (410)
T ss_dssp             SEECCCTTT--TTHHHHHHHHHHHHHTT
T ss_pred             CEEecCccc--cCCHHHHHHHHHHHHHc
Confidence            766665444  44433344555555543

>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9

Probab=96.39  E-value=0.027  Score=51.47  Aligned_cols=97  Identities=15%  Similarity=0.042  Sum_probs=62.8

Q ss_pred             HHHHHHHHHcCCCEEEEeec----CCccccCCCC----HHHHHHHhh----c-CCCcEEEEe-CCCCHHHHHHHHHhCCC
Q 021156          216 DERVLDFLASYADEFLVHGV----DVEGKKLGID----DELVALLGK----Y-SPIPVTYAG-GVTTMADLEKIKVAGIG  281 (316)
Q Consensus       216 ~e~a~~~~~~Ga~~ilvtdi----~~dG~~~G~d----~eli~~l~~----~-~~iPVIasG-GI~s~eDi~~l~~~G~g  281 (316)
                      .+.++.+.++|++.|++|-=    ..-|+.....    .+.++++.+    . .++.|+..| ||.+++|+..+++...|
T Consensus       173 ~eeA~amA~agpDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdvivLc~gGpIstpeDv~~~l~~t~G  252 (286)
T 2p10_A          173 PEDAVAMAKAGADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDIIILSHGGPIANPEDARFILDSCQG  252 (286)
T ss_dssp             HHHHHHHHHHTCSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHHCSCCEEEEESTTCCSHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHcCCCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCCCcEEEecCCCCCCHHHHHHHHhcCCC
Confidence            46788889999999998875    2333333333    334444432    2 366676666 99999999999999333


Q ss_pred             cCEEEEccchhhccCcccHHHHHHHHHhhccccc
Q 021156          282 RVDVTVGSALDIFGGNLAYKDVVAWHAQQEALTV  315 (316)
Q Consensus       282 ~~gVivG~Al~~~~g~~~~~~~~~~~~~~~~~~~  315 (316)
                      ++|++.+|++  -.=+ +-+.+.+..++++++..
T Consensus       253 ~~G~~gASsi--er~p-~e~ai~~~~~~fk~~~~  283 (286)
T 2p10_A          253 CHGFYGASSM--ERLP-AEEAIRSQTLAFKAIRR  283 (286)
T ss_dssp             CCEEEESHHH--HHHH-HHHHHHHHHHHHHTCCC
T ss_pred             ccEEEeehhh--hcCC-HHHHHHHHHHHHHhccc
Confidence            9999999999  3333 33344556777776654

>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*

Probab=96.39  E-value=0.0048  Score=57.67  Aligned_cols=73  Identities=16%  Similarity=0.077  Sum_probs=54.6

Q ss_pred             HHHHHHHHcCCCcceEEEecCC-----cccHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCC
Q 021156           97 EFANLYKEDGLTGGHAIMLGAD-----PLSKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQ  169 (316)
Q Consensus        97 e~a~~~~~~G~~~l~lvDLda~-----~~~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~  169 (316)
                      +.|+...+.|++.+.+---+++     ......+.++.+.+++|+++.|||+ .+++.+++..||+.|.+||.++.+++
T Consensus       121 ~~a~~~~~~GaD~i~v~g~~~GG~~g~~~~~~ll~~i~~~~~iPViaaGGI~~~~~~~~al~~GAdgV~vGs~~l~~~e  199 (332)
T 2z6i_A          121 ALAKRMEKIGADAVIAEGMEAGGHIGKLTTMTLVRQVATAISIPVIAAGGIADGEGAAAGFMLGAEAVQVGTRFVVAKE  199 (332)
T ss_dssp             HHHHHHHHTTCSCEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHTBTT
T ss_pred             HHHHHHHHcCCCEEEEECCCCCCCCCCccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEecHHHhcCcc
Confidence            4677888899998777433222     1223333344446889999999998 69999999999999999999998743

>2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis}

Probab=96.37  E-value=0.011  Score=56.57  Aligned_cols=142  Identities=12%  Similarity=0.059  Sum_probs=93.7

Q ss_pred             HHHHHHHHcCCCEEEeCCe-----ee------------cCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCc
Q 021156          145 DNSLSYIEEGATHVIVTSY-----VF------------NNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRW  207 (316)
Q Consensus       145 e~~~~~l~~Gad~VVigt~-----~~------------~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw  207 (316)
                      ++++++.+.|.+.+=+-..     -.            ++.+.+.+.++.+.+.+|+ .+.+.+|+.   +       +|
T Consensus       152 ~~a~~~~~~Gf~~vKik~~~~~~~G~~~~s~~~g~~~~~~~~~~~e~v~avr~avG~-d~~l~vDan---~-------~~  220 (403)
T 2ox4_A          152 EEALKAVAEGYDAVKVDVLAHDRNGSREGVFLEGPLPSETIKIGVERVEAIRNAVGP-DVDIIVENH---G-------HT  220 (403)
T ss_dssp             HHHHHHHHTTCSEEEECCSSSCTTSCCTTCCCSSSCCHHHHHHHHHHHHHHHHHHCT-TSEEEEECT---T-------CS
T ss_pred             HHHHHHHHcCCCEEEEeccccCCccccccCcccCCCchHHHHHHHHHHHHHHHHhCC-CCeEEEECC---C-------CC
Confidence            5577888899987654311     00            0101136788888888975 456778873   2       45


Q ss_pred             ceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEE
Q 021156          208 QKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTV  287 (316)
Q Consensus       208 ~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gViv  287 (316)
                      ...   +..++++.+++.++..+  -     .-....|++.++++++.+++||.+.+.+.+.++++++++.+ .++.+.+
T Consensus       221 ~~~---~ai~~~~~l~~~~i~~i--E-----~P~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~-~~d~v~i  289 (403)
T 2ox4_A          221 DLV---SAIQFAKAIEEFNIFFY--E-----EINTPLNPRLLKEAKKKIDIPLASGERIYSRWGFLPFLEDR-SIDVIQP  289 (403)
T ss_dssp             CHH---HHHHHHHHHGGGCEEEE--E-----CCSCTTSTHHHHHHHHTCCSCEEECTTCCHHHHHHHHHHTT-CCSEECC
T ss_pred             CHH---HHHHHHHHHHhhCCCEE--e-----CCCChhhHHHHHHHHHhCCCCEEecCCcCCHHHHHHHHHcC-CCCEEec
Confidence            421   35677888888776532  1     11233489999999998999999999999999999999988 3676766


Q ss_pred             ccchhhccCcccHHHHHHHHHhh
Q 021156          288 GSALDIFGGNLAYKDVVAWHAQQ  310 (316)
Q Consensus       288 G~Al~~~~g~~~~~~~~~~~~~~  310 (316)
                      --.-  .+|-....++.++++++
T Consensus       290 k~~~--~GGite~~~i~~~A~~~  310 (403)
T 2ox4_A          290 DLGT--CGGFTEFKKIADMAHIF  310 (403)
T ss_dssp             CHHH--HTHHHHHHHHHHHHHHT
T ss_pred             Cccc--cCCHHHHHHHHHHHHHc
Confidence            5444  44433344555555543

>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*

Probab=96.35  E-value=0.0049  Score=58.68  Aligned_cols=70  Identities=17%  Similarity=0.098  Sum_probs=51.9

Q ss_pred             HHHHHHHHcCCCcceEEE-----ecCCcccHHHHHHHHHhC--CCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeeec
Q 021156           97 EFANLYKEDGLTGGHAIM-----LGADPLSKAAAIEALHAY--PGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        97 e~a~~~~~~G~~~l~lvD-----Lda~~~~~~~i~~~v~~~--~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      +.|+...++|++.+.+-.     ++........+.++.+.+  .+|++..|||++ +|+.+++..||+.|.+|+.++.
T Consensus       241 e~a~~a~~~Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~~v~~~ipVia~GGI~~g~D~~kalalGAd~V~iGr~~l~  318 (368)
T 2nli_A          241 EDADMAIKRGASGIWVSNHGARQLYEAPGSFDTLPAIAERVNKRVPIVFDSGVRRGEHVAKALASGADVVALGRPVLF  318 (368)
T ss_dssp             HHHHHHHHTTCSEEEECCGGGTSCSSCCCHHHHHHHHHHHHTTSSCEEECSSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred             HHHHHHHHcCCCEEEEcCCCcCCCCCCCChHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence            578888899998776632     222233344444444444  599999999995 9999999999999999997765

>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0

Probab=96.34  E-value=0.0062  Score=57.94  Aligned_cols=72  Identities=24%  Similarity=0.197  Sum_probs=53.2

Q ss_pred             CHHHHHHHHHHcCCCcceEEE-----ecCCcccHHHHHHHHHhC--CCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeee
Q 021156           94 SAAEFANLYKEDGLTGGHAIM-----LGADPLSKAAAIEALHAY--PGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVF  165 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvD-----Lda~~~~~~~i~~~v~~~--~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~  165 (316)
                      +| +.|+...++|++.+.+-.     +++.......+.++.+.+  .+|++..|||++ +|+.+++.+||+.|.+|+.++
T Consensus       235 ~~-e~a~~a~~~Gad~I~vs~~ggr~~~~~~~~~~~l~~v~~~~~~~ipvia~GGI~~~~D~~k~l~~GAdaV~iGr~~l  313 (370)
T 1gox_A          235 TA-EDARLAVQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVV  313 (370)
T ss_dssp             SH-HHHHHHHHTTCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTTTSSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHH
T ss_pred             CH-HHHHHHHHcCCCEEEECCCCCccCCCcccHHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHHHcCCCEEeecHHHH
Confidence            45 477888889999877732     222223334444444555  699999999985 899999999999999999876


Q ss_pred             c
Q 021156          166 N  166 (316)
Q Consensus       166 ~  166 (316)
                      .
T Consensus       314 ~  314 (370)
T 1gox_A          314 F  314 (370)
T ss_dssp             H
T ss_pred             H
Confidence            5

>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*

Probab=96.32  E-value=0.0051  Score=57.68  Aligned_cols=73  Identities=19%  Similarity=0.130  Sum_probs=54.2

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCC-----------cc--cHHHHHHHHHhCCCcEEEecCCCH-HHHHHHHHcCCCEEE
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGAD-----------PL--SKAAAIEALHAYPGGLQVGGGINS-DNSLSYIEEGATHVI  159 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~-----------~~--~~~~i~~~v~~~~~pl~vGGGIr~-e~~~~~l~~Gad~VV  159 (316)
                      ++ +.|+...++|++.+.+-.-.+.           .+  ....+.++.+.+++|++..|||++ +|+.+++.+||+-|.
T Consensus       159 s~-e~A~~a~~aGad~Ivvs~hgG~~~~~~~~~~~g~~g~~~~~l~~v~~~~~ipVIa~GGI~~g~Dv~kalalGAdaV~  237 (336)
T 1ypf_A          159 TP-EAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAASKPIIADGGIRTNGDVAKSIRFGATMVM  237 (336)
T ss_dssp             SH-HHHHHHHHHTCSEEEECSSCSTTCHHHHHHSCSSTTCHHHHHHHHHHTCSSCEEEESCCCSTHHHHHHHHTTCSEEE
T ss_pred             CH-HHHHHHHHcCCCEEEEecCCCceeecccccCcCCchhHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence            44 5889999999997766211110           01  234455555567999999999995 999999999999999


Q ss_pred             eCCeeecC
Q 021156          160 VTSYVFNN  167 (316)
Q Consensus       160 igt~~~~~  167 (316)
                      +|+.++..
T Consensus       238 iGr~~l~t  245 (336)
T 1ypf_A          238 IGSLFAGH  245 (336)
T ss_dssp             ESGGGTTC
T ss_pred             eChhhhcc
Confidence            99999853

>3v3w_A Starvation sensing protein RSPA; enolase, enzyme function initiative, EFI, lyase; HET: NHE; 1.40A {Cellvibrio japonicus} PDB: 3v4b_A* 4f4r_A 3qkf_A* 3qke_A* 3p93_A* 3ow1_A 3pk7_A* 3rgt_A* 3bsm_A

Probab=96.30  E-value=0.011  Score=57.31  Aligned_cols=115  Identities=8%  Similarity=-0.000  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHH
Q 021156          172 LERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVAL  251 (316)
Q Consensus       172 ~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~  251 (316)
                      .+.++.+.+.+|+ .+-+.+|+.          .+|...   +..++++.+.+.|+..+  -.     -....|++.+++
T Consensus       213 ~e~v~avR~avG~-d~~l~vDaN----------~~~~~~---~A~~~~~~L~~~~i~~i--Eq-----P~~~~d~~~~~~  271 (424)
T 3v3w_A          213 PDVFAAVRKEFGP-DIHLLHDVH----------HRLTPI---EAARLGKALEPYHLFWM--ED-----AVPAENQESFKL  271 (424)
T ss_dssp             HHHHHHHHHHHCS-SSEEEEECT----------TCCCHH---HHHHHHHHHGGGCCSEE--EC-----CSCCSSTTHHHH
T ss_pred             HHHHHHHHHHcCC-CCcEEEeCC----------CCCCHH---HHHHHHHHHHhcCCCEE--EC-----CCChHhHHHHHH
Confidence            6788889999985 456778873          356532   46678889988888754  11     122237888999


Q ss_pred             HhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHHhh
Q 021156          252 LGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQQ  310 (316)
Q Consensus       252 l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~~~  310 (316)
                      +++.+++||.+.+.+.+.+++.++++.+ .++.+.+--+-  .+|-....++.++++++
T Consensus       272 l~~~~~iPIa~dE~~~~~~~~~~~i~~g-a~d~v~~k~~~--~GGit~~~~ia~~A~~~  327 (424)
T 3v3w_A          272 IRQHTTTPLAVGEVFNSIHDCRELIQNQ-WIDYIRTTIVH--AGGISQMRRIADFASLF  327 (424)
T ss_dssp             HHHHCCSCEEECTTCCSGGGTHHHHHTT-CCSEECCCTTT--TTHHHHHHHHHHHHHTT
T ss_pred             HHhhCCCCEEEccCcCCHHHHHHHHHcC-CCCeEeecchh--cCCHHHHHHHHHHHHHc
Confidence            9998999999999999999999999988 47767766555  55544455555555554

>4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440}

Probab=96.27  E-value=0.0035  Score=59.64  Aligned_cols=81  Identities=15%  Similarity=0.062  Sum_probs=62.0

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHH-hCCCcEEEecCCCHHHHHHHHHcC-CCEEEeCCeeecCCCCC
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALH-AYPGGLQVGGGINSDNSLSYIEEG-ATHVIVTSYVFNNGQMD  171 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~-~~~~pl~vGGGIr~e~~~~~l~~G-ad~VVigt~~~~~~~~~  171 (316)
                      +..++|+.++++|++.+|+..=....    ...+.++ .+++|+++.||++.++++++++.| ||.|.+|..++.|    
T Consensus       243 ~~~~la~~l~~~Gvd~i~v~~~~~~~----~~~~~ik~~~~iPvi~~Ggit~e~a~~~l~~g~aD~V~iGR~~lan----  314 (362)
T 4ab4_A          243 TFTYVARELGKRGIAFICSREREADD----SIGPLIKEAFGGPYIVNERFDKASANAALASGKADAVAFGVPFIAN----  314 (362)
T ss_dssp             HHHHHHHHHHHTTCSEEEEECCCCTT----CCHHHHHHHHCSCEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHC----
T ss_pred             HHHHHHHHHHHhCCCEEEECCCCCCH----HHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCccEEEECHHhHhC----
Confidence            34578999999999877775422111    1223333 467999999999669999999998 9999999999998    


Q ss_pred             HHHHHHHHHHh
Q 021156          172 LERLKDLVRVV  182 (316)
Q Consensus       172 ~eli~ei~~~~  182 (316)
                      |+++.++.+..
T Consensus       315 Pdl~~k~~~g~  325 (362)
T 4ab4_A          315 PDLPARLAADA  325 (362)
T ss_dssp             TTHHHHHHTTC
T ss_pred             cHHHHHHHcCC
Confidence            99999998743

>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*

Probab=96.26  E-value=0.008  Score=54.89  Aligned_cols=67  Identities=12%  Similarity=0.226  Sum_probs=50.6

Q ss_pred             HHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhc-----CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          217 ERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKY-----SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       217 e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~-----~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      +.+++..+.|++.|.+..         .+.+.++++.+.     .++|+.++||| +.+.+.++.+.|  ++++.+|+++
T Consensus       193 ee~~~A~~aGaD~I~ld~---------~~~~~l~~~v~~l~~~~~~~~i~AsGGI-~~~ni~~~~~aG--aD~i~vGs~i  260 (273)
T 2b7n_A          193 EEAKNAMNAGADIVMCDN---------LSVLETKEIAAYRDAHYPFVLLEASGNI-SLESINAYAKSG--VDAISVGALI  260 (273)
T ss_dssp             HHHHHHHHHTCSEEEEET---------CCHHHHHHHHHHHHHHCTTCEEEEESSC-CTTTHHHHHTTT--CSEEECTHHH
T ss_pred             HHHHHHHHcCCCEEEECC---------CCHHHHHHHHHHhhccCCCcEEEEECCC-CHHHHHHHHHcC--CcEEEEcHHh
Confidence            456667778999887543         235555554432     34899999999 889999999998  9999999998


Q ss_pred             hhccCc
Q 021156          292 DIFGGN  297 (316)
Q Consensus       292 ~~~~g~  297 (316)
                        |.-+
T Consensus       261 --~~a~  264 (273)
T 2b7n_A          261 --HQAT  264 (273)
T ss_dssp             --HTCC
T ss_pred             --cCCC
Confidence              6533

>3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0

Probab=96.25  E-value=0.0043  Score=58.97  Aligned_cols=80  Identities=15%  Similarity=0.059  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHH-hCCCcEEEecCCCHHHHHHHHHcC-CCEEEeCCeeecCCCCCH
Q 021156           95 AAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALH-AYPGGLQVGGGINSDNSLSYIEEG-ATHVIVTSYVFNNGQMDL  172 (316)
Q Consensus        95 p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~-~~~~pl~vGGGIr~e~~~~~l~~G-ad~VVigt~~~~~~~~~~  172 (316)
                      ..++|+.+.++|++.+|+..=....    ...+.++ .+++|++..||++.++++++++.| ||.|.+|..++.|    |
T Consensus       252 ~~~la~~l~~~Gvd~i~v~~~~~~~----~~~~~ik~~~~iPvi~~Ggit~e~a~~~l~~G~aD~V~iGR~~lad----P  323 (361)
T 3gka_A          252 FGHVARELGRRRIAFLFARESFGGD----AIGQQLKAAFGGPFIVNENFTLDSAQAALDAGQADAVAWGKLFIAN----P  323 (361)
T ss_dssp             HHHHHHHHHHTTCSEEEEECCCSTT----CCHHHHHHHHCSCEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHC----T
T ss_pred             HHHHHHHHHHcCCCEEEECCCCCCH----HHHHHHHHHcCCCEEEeCCCCHHHHHHHHHcCCccEEEECHHhHhC----c
Confidence            4578999999999877775422111    1223333 467999999999669999999998 9999999999998    9


Q ss_pred             HHHHHHHHHh
Q 021156          173 ERLKDLVRVV  182 (316)
Q Consensus       173 eli~ei~~~~  182 (316)
                      +++.++.+..
T Consensus       324 dl~~k~~~g~  333 (361)
T 3gka_A          324 DLPRRFKLNA  333 (361)
T ss_dssp             THHHHHHHTC
T ss_pred             HHHHHHHhCC
Confidence            9999998743

>3dgb_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding, isomeras structural genomics, PSI-2; HET: MUC; 1.70A {Pseudomonas fluorescens} PDB: 3ct2_A* 3fj4_A* 1muc_A 1bkh_A 3muc_A 2muc_A 1f9c_A

Probab=96.24  E-value=0.035  Score=52.84  Aligned_cols=138  Identities=11%  Similarity=0.087  Sum_probs=96.4

Q ss_pred             HHHHHHHH-cCCCE--EEeCCee-ecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHH
Q 021156          145 DNSLSYIE-EGATH--VIVTSYV-FNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVL  220 (316)
Q Consensus       145 e~~~~~l~-~Gad~--VVigt~~-~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~  220 (316)
                      ++++++++ .|...  +=+|... ..+    .+.++.+.+.+| ..+.+.+|+.          .+|...   +..++++
T Consensus       154 ~~~~~~~~~~G~~~~KiKvg~~~~~~d----~~~v~avR~a~g-~~~~l~vDaN----------~~~~~~---~A~~~~~  215 (382)
T 3dgb_A          154 AEAQKMLDLRRHRIFKLKIGAGEVDRD----LAHVIAIKKALG-DSASVRVDVN----------QAWDEA---VALRACR  215 (382)
T ss_dssp             HHHHHHHHTTSCSEEEEECCSSCHHHH----HHHHHHHHHHHG-GGSEEEEECT----------TCBCHH---HHHHHHH
T ss_pred             HHHHHHHHhCCCCEEEEeeCCCCHHHH----HHHHHHHHHHcC-CCCeEEEeCC----------CCCCHH---HHHHHHH
Confidence            34556666 57764  4456532 233    788999999997 4466888873          356532   4667888


Q ss_pred             HHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccH
Q 021156          221 DFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAY  300 (316)
Q Consensus       221 ~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~  300 (316)
                      .+.+.++..+  -    + =...-|++.++++++.+++||.+..-+.+..|+.++++.+ .++.+.+--+-  .+|--..
T Consensus       216 ~l~~~~i~~i--E----q-P~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~~~~~-~~d~v~~k~~~--~GGit~~  285 (382)
T 3dgb_A          216 ILGGNGIDLI--E----Q-PISRNNRAGMVRLNASSPAPIMADESIECVEDAFNLAREG-AASVFALKIAK--NGGPRAT  285 (382)
T ss_dssp             HHHTTTCCCE--E----C-CBCTTCHHHHHHHHHHCSSCEEESTTCSSHHHHHHHHHHT-CCSEEEECHHH--HTSHHHH
T ss_pred             HHhhcCcCee--e----C-CCCccCHHHHHHHHHhCCCCEEeCCCcCCHHHHHHHHHcC-CCCEEEecccc--cCCHHHH
Confidence            8988887643  1    1 1222389999999998999999999999999999999987 47777777666  6664445


Q ss_pred             HHHHHHHHhh
Q 021156          301 KDVVAWHAQQ  310 (316)
Q Consensus       301 ~~~~~~~~~~  310 (316)
                      .++.++++++
T Consensus       286 ~~i~~~A~~~  295 (382)
T 3dgb_A          286 LRTAAIAEAA  295 (382)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHc
Confidence            5555555554

>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}

Probab=96.24  E-value=0.01  Score=53.63  Aligned_cols=58  Identities=24%  Similarity=0.297  Sum_probs=41.4

Q ss_pred             HHHHHHH-hCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCC-CCCHHHHHHHHHHh
Q 021156          124 AAIEALH-AYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNG-QMDLERLKDLVRVV  182 (316)
Q Consensus       124 ~i~~~v~-~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~-~~~~eli~ei~~~~  182 (316)
                      ..++.++ ..++|+.+|+||+ .+++.+ +..|||.||+||+..+.. +-+.+.++++.+.+
T Consensus       196 ~~v~~vr~~~~~pv~vG~GI~t~e~~~~-~~~gADgvIVGSai~~~~~~~~~~~~~~~~~~~  256 (262)
T 2ekc_A          196 KKVEEYRELCDKPVVVGFGVSKKEHARE-IGSFADGVVVGSALVKLAGQKKIEDLGNLVKEL  256 (262)
T ss_dssp             HHHHHHHHHCCSCEEEESSCCSHHHHHH-HHTTSSEEEECHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhhcCCCEEEeCCCCCHHHHHH-HHcCCCEEEECHHHHhhhhhhhHHHHHHHHHHH
Confidence            3445555 4689999999999 599999 788999999999988641 00244555555444

>3r4e_A Mandelate racemase/muconate lactonizing enzyme; enolase fold, mannonate dehydratase, D-mannonate, lyase; HET: CS2; 1.65A {Novosphingobium aromaticivorans} PDB: 2qjj_A 2qjn_A* 2qjm_A*

Probab=96.24  E-value=0.011  Score=57.02  Aligned_cols=115  Identities=10%  Similarity=-0.042  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHH
Q 021156          172 LERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVAL  251 (316)
Q Consensus       172 ~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~  251 (316)
                      .+.++.+.+.+|+ .+.+.+|+.          .+|...   +..++++.+.+.|+..+  -.     -....|++.+++
T Consensus       207 ~~~v~avR~a~G~-d~~l~vDaN----------~~~~~~---~A~~~~~~L~~~~i~~i--Eq-----P~~~~d~~~~~~  265 (418)
T 3r4e_A          207 PKLFEELRKTYGF-DHHLLHDGH----------HRYTPQ---EAANLGKMLEPYQLFWL--ED-----CTPAENQEAFRL  265 (418)
T ss_dssp             HHHHHHHHHHHCS-SSEEEEECT----------TCSCHH---HHHHHHHHHGGGCCSEE--ES-----CSCCSSGGGGHH
T ss_pred             HHHHHHHHHHcCC-CCeEEEeCC----------CCCCHH---HHHHHHHHHHhhCCCEE--EC-----CCCccCHHHHHH
Confidence            6778889899985 456778873          356532   46678889999888754  11     122237888999


Q ss_pred             HhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHHhh
Q 021156          252 LGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQQ  310 (316)
Q Consensus       252 l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~~~  310 (316)
                      +++.+++||.+.+.+.+.+++.++++.+ .++.+.+--+-  .+|-....++.++++++
T Consensus       266 l~~~~~iPIa~dE~~~~~~~~~~~l~~~-a~d~v~~k~~~--~GGit~~~~ia~~A~~~  321 (418)
T 3r4e_A          266 VRQHTVTPLAVGEIFNTIWDAKDLIQNQ-LIDYIRATVVG--AGGLTHLRRIADLASLY  321 (418)
T ss_dssp             HHHHCCSCEEECTTCCSGGGTHHHHHTT-CCSEECCCTTT--TTHHHHHHHHHHHHHHT
T ss_pred             HHhcCCCCEEEcCCcCCHHHHHHHHHcC-CCCeEecCccc--cCCHHHHHHHHHHHHHc
Confidence            9998999999999999999999999988 47767766555  55544455555555554

>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*

Probab=96.24  E-value=0.0021  Score=57.34  Aligned_cols=51  Identities=22%  Similarity=0.220  Sum_probs=39.1

Q ss_pred             CCCcEEEecCCCHHHHHHHHHcCCCEEEeC-CeeecCCCCCHHHHHHHHHHh
Q 021156          132 YPGGLQVGGGINSDNSLSYIEEGATHVIVT-SYVFNNGQMDLERLKDLVRVV  182 (316)
Q Consensus       132 ~~~pl~vGGGIr~e~~~~~l~~Gad~VVig-t~~~~~~~~~~eli~ei~~~~  182 (316)
                      .+++++|+|||+.+.+..+.++|||.+|+| |+.++.+....+.++++.+.+
T Consensus       166 ~~~~I~VdGGI~~~~~~~~~~aGAd~~V~G~saif~~~d~~~~~~~~l~~~~  217 (231)
T 3ctl_A          166 LEYEIEVDGSCNQATYEKLMAAGADVFIVGTSGLFNHAENIDEAWRIMTAQI  217 (231)
T ss_dssp             CCCEEEEESCCSTTTHHHHHHHTCCEEEECTTTTGGGCSSHHHHHHHHHHHH
T ss_pred             CCceEEEECCcCHHHHHHHHHcCCCEEEEccHHHhCCCCcHHHHHHHHHHHH
Confidence            368999999999999999999999999999 988864210024555565544

>3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A*

Probab=96.24  E-value=0.0063  Score=58.16  Aligned_cols=81  Identities=11%  Similarity=0.065  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHcCCCcceEEEec--CCcccHHHHHHHHH-hCCCcEEEecCCCHHHHHHHHHcC-CCEEEeCCeeecCCCC
Q 021156           95 AAEFANLYKEDGLTGGHAIMLG--ADPLSKAAAIEALH-AYPGGLQVGGGINSDNSLSYIEEG-ATHVIVTSYVFNNGQM  170 (316)
Q Consensus        95 p~e~a~~~~~~G~~~l~lvDLd--a~~~~~~~i~~~v~-~~~~pl~vGGGIr~e~~~~~l~~G-ad~VVigt~~~~~~~~  170 (316)
                      ..++++.+++.|++.+|+..=.  ....... + +.++ .+++|++..|||+.++++++++.| ||.|.+|..++.|   
T Consensus       268 ~~~la~~l~~~Gvd~i~v~~~~~~~~~~~~~-~-~~ir~~~~iPvi~~G~it~~~a~~~l~~g~aD~V~igR~~l~~---  342 (379)
T 3aty_A          268 TKHLCKKIEPLSLAYLHYLRGDMVNQQIGDV-V-AWVRGSYSGVKISNLRYDFEEADQQIREGKVDAVAFGAKFIAN---  342 (379)
T ss_dssp             HHHHHHHHGGGCCSEEEEECSCTTSCCCCCH-H-HHHHTTCCSCEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHC---
T ss_pred             HHHHHHHHHHhCCCEEEEcCCCcCCCCccHH-H-HHHHHHCCCcEEEECCCCHHHHHHHHHcCCCeEEEecHHHHhC---
Confidence            4567888888898887775411  0001123 3 4444 688999999999669999999998 9999999999998   


Q ss_pred             CHHHHHHHHHH
Q 021156          171 DLERLKDLVRV  181 (316)
Q Consensus       171 ~~eli~ei~~~  181 (316)
                       |+++.++.+.
T Consensus       343 -P~l~~k~~~g  352 (379)
T 3aty_A          343 -PDLVERAQQN  352 (379)
T ss_dssp             -TTHHHHHHHT
T ss_pred             -cHHHHHHHcC
Confidence             9999999763

>3fcp_A L-Ala-D/L-Glu epimerase, A muconate lactonizing enzyme; structural genomics, nysgrc,target 9450E, PSI-2; 1.80A {Klebsiella pneumoniae subsp}

Probab=96.23  E-value=0.04  Score=52.37  Aligned_cols=138  Identities=12%  Similarity=0.094  Sum_probs=96.2

Q ss_pred             HHHHHHH-cCCCE--EEeCCee-ecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHH
Q 021156          146 NSLSYIE-EGATH--VIVTSYV-FNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLD  221 (316)
Q Consensus       146 ~~~~~l~-~Gad~--VVigt~~-~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~  221 (316)
                      ++.++++ .|...  +=+|... ..+    .+.++.+.+.+| ..+.+.+|+.          .+|...   +..++++.
T Consensus       154 ~~~~~~~~~G~~~~KiKvg~~~~~~d----~~~v~avR~a~g-~~~~l~vDaN----------~~~~~~---~A~~~~~~  215 (381)
T 3fcp_A          154 EGEKLLAEGRHRAFKLKIGARELATD----LRHTRAIVEALG-DRASIRVDVN----------QAWDAA---TGAKGCRE  215 (381)
T ss_dssp             HHHHHTC----CEEEEECCSSCHHHH----HHHHHHHHHHTC-TTCEEEEECT----------TCBCHH---HHHHHHHH
T ss_pred             HHHHHHHhCCCCEEEEecCCCChHHH----HHHHHHHHHHcC-CCCeEEEECC----------CCCCHH---HHHHHHHH
Confidence            3445555 46654  4456532 233    788999999997 4566888973          356532   46678889


Q ss_pred             HHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHH
Q 021156          222 FLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYK  301 (316)
Q Consensus       222 ~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~  301 (316)
                      +.+.++..+       +.=....|++.++++++.+++||.+..-+.+..|+.++++.+ .++.+.+--+-  .+|--...
T Consensus       216 l~~~~i~~i-------EeP~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~~~~~-a~d~v~~k~~~--~GGit~~~  285 (381)
T 3fcp_A          216 LAAMGVDLI-------EQPVSAHDNAALVRLSQQIETAILADEAVATAYDGYQLAQQG-FTGAYALKIAK--AGGPNSVL  285 (381)
T ss_dssp             HHHTTCSEE-------ECCBCTTCHHHHHHHHHHSSSEEEESTTCCSHHHHHHHHHTT-CCSEEEECHHH--HTSTTHHH
T ss_pred             HhhcCccce-------eCCCCcccHHHHHHHHHhCCCCEEECCCcCCHHHHHHHHHcC-CCCEEEecccc--cCCHHHHH
Confidence            999887754       111223389999999998999999999999999999999987 47778877666  66766667


Q ss_pred             HHHHHHHhhc
Q 021156          302 DVVAWHAQQE  311 (316)
Q Consensus       302 ~~~~~~~~~~  311 (316)
                      ++.++++++.
T Consensus       286 ~ia~~A~~~g  295 (381)
T 3fcp_A          286 ALARVAQAAG  295 (381)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHcC
Confidence            7777666644

>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*

Probab=96.21  E-value=0.0098  Score=55.35  Aligned_cols=74  Identities=9%  Similarity=0.062  Sum_probs=53.1

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCC-c-----ccHHHHHHHH-HhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeee
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGAD-P-----LSKAAAIEAL-HAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVF  165 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~-~-----~~~~~i~~~v-~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~  165 (316)
                      ++. .++...+.|++.+.+...+++ .     ......+..+ +.+++|++++|||+ .+++.+++..||+-|.+||.++
T Consensus       127 t~~-~a~~~~~~GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~~~iPviaaGGI~~~~~v~~al~~GAdgV~vGs~~~  205 (328)
T 2gjl_A          127 AVR-HALKAERLGVDAVSIDGFECAGHPGEDDIPGLVLLPAAANRLRVPIIASGGFADGRGLVAALALGADAINMGTRFL  205 (328)
T ss_dssp             SHH-HHHHHHHTTCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHH
T ss_pred             CHH-HHHHHHHcCCCEEEEECCCCCcCCCCccccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence            454 566677789997775433322 1     1223333444 45789999999997 5999999999999999999998


Q ss_pred             cCC
Q 021156          166 NNG  168 (316)
Q Consensus       166 ~~~  168 (316)
                      ...
T Consensus       206 ~~~  208 (328)
T 2gjl_A          206 ATR  208 (328)
T ss_dssp             TSS
T ss_pred             cCc
Confidence            873

>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}

Probab=96.18  E-value=0.006  Score=56.97  Aligned_cols=72  Identities=13%  Similarity=0.057  Sum_probs=53.8

Q ss_pred             HHHHHHHHcCCCcceEEEecCCc-----ccHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCC
Q 021156           97 EFANLYKEDGLTGGHAIMLGADP-----LSKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNG  168 (316)
Q Consensus        97 e~a~~~~~~G~~~l~lvDLda~~-----~~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~  168 (316)
                      +.|+...+.|++.+.+-.-+++.     .....+.++.+.+++|+++.|||+ .+++.+++.+||+-|.+||.++...
T Consensus       135 ~~a~~a~~~GaD~i~v~g~~~GG~~G~~~~~~ll~~i~~~~~iPviaaGGI~~~~dv~~al~~GA~gV~vGs~~~~~~  212 (326)
T 3bo9_A          135 SLARMVERAGADAVIAEGMESGGHIGEVTTFVLVNKVSRSVNIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFVASV  212 (326)
T ss_dssp             HHHHHHHHTTCSCEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHTBS
T ss_pred             HHHHHHHHcCCCEEEEECCCCCccCCCccHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHhCCCEEEechHHHcCc
Confidence            46777778899986665543221     223334444456789999999998 6999999999999999999998764

>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*

Probab=96.17  E-value=0.004  Score=58.96  Aligned_cols=70  Identities=20%  Similarity=0.171  Sum_probs=52.1

Q ss_pred             HHHHHHHHcCCCcceEEE-----ecCCcccHHHHHHHHHhC--CCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeeec
Q 021156           97 EFANLYKEDGLTGGHAIM-----LGADPLSKAAAIEALHAY--PGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        97 e~a~~~~~~G~~~l~lvD-----Lda~~~~~~~i~~~v~~~--~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      +.|+...++|++.+.+-.     +|+.......+.++.+.+  .+||+..|||++ +|+.+++.+||+-|.+|+.++.
T Consensus       229 e~A~~a~~~GaD~I~vsn~GG~~~d~~~~~~~~L~~i~~av~~~ipVia~GGI~~g~Dv~kaLalGA~aV~iGr~~l~  306 (352)
T 3sgz_A          229 EDAELAMKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLGRPILW  306 (352)
T ss_dssp             HHHHHHHHTTCSEEEECCGGGTSSCSSCCHHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHH
T ss_pred             HHHHHHHHcCCCEEEEeCCCCCccCCCccHHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence            578888899999776533     222223344444554544  699999999995 9999999999999999998764

>2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941}

Probab=96.17  E-value=0.034  Score=53.34  Aligned_cols=142  Identities=12%  Similarity=0.063  Sum_probs=93.1

Q ss_pred             HHHHHHHHcCCCEEEe------CCe-------ee--cCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcce
Q 021156          145 DNSLSYIEEGATHVIV------TSY-------VF--NNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQK  209 (316)
Q Consensus       145 e~~~~~l~~Gad~VVi------gt~-------~~--~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~  209 (316)
                      ++++++.+.|.+.+=+      |..       +.  ++.+.+.+.++.+.+.+|+ .+.+.+|+.   +       +|..
T Consensus       155 ~~a~~~~~~Gf~~vKik~~~~~G~~~~~~~G~~~~~~~~~~~~e~v~avRea~G~-d~~l~vDan---~-------~~~~  223 (410)
T 2qq6_A          155 AVAREAVERGFDAIKLDVDDITGPLHRDFWNGAISPREHEAMVARVAAVREAVGP-EVEVAIDMH---G-------RFDI  223 (410)
T ss_dssp             HHHHHHHHTTCSEEEEECCCSSSTTCSCSSSCCCCHHHHHHHHHHHHHHHHHHCS-SSEEEEECT---T-------CCCH
T ss_pred             HHHHHHHHcCCCEEEeeccccCCcccCCcCccccchhhHHHHHHHHHHHHHhcCC-CCEEEEECC---C-------CCCH
Confidence            4577888899887543      321       00  0101136888888888975 456788873   2       4542


Q ss_pred             ecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEcc
Q 021156          210 FSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGS  289 (316)
Q Consensus       210 ~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~  289 (316)
                         -+..++++.+.+.++..+  -+     -....|++.++++++.+++||.+.+.+.+.++++++++.+ .++.+.+--
T Consensus       224 ---~~a~~~~~~l~~~~i~~i--Ee-----P~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~-~~d~v~ik~  292 (410)
T 2qq6_A          224 ---PSSIRFARAMEPFGLLWL--EE-----PTPPENLDALAEVRRSTSTPICAGENVYTRFDFRELFAKR-AVDYVMPDV  292 (410)
T ss_dssp             ---HHHHHHHHHHGGGCCSEE--EC-----CSCTTCHHHHHHHHTTCSSCEEECTTCCSHHHHHHHHHTT-CCSEECCBH
T ss_pred             ---HHHHHHHHHHhhcCCCeE--EC-----CCChhhHHHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHcC-CCCEEecCc
Confidence               135678888888888743  21     1223589999999998999999999999999999999988 366666643


Q ss_pred             chhhccCcccHHHHHHHHHhh
Q 021156          290 ALDIFGGNLAYKDVVAWHAQQ  310 (316)
Q Consensus       290 Al~~~~g~~~~~~~~~~~~~~  310 (316)
                      .-  .+|--...++.++++++
T Consensus       293 ~~--~GGite~~~ia~~A~~~  311 (410)
T 2qq6_A          293 AK--CGGLAEAKRIANLAELD  311 (410)
T ss_dssp             HH--HTHHHHHHHHHHHHHTT
T ss_pred             cc--cCCHHHHHHHHHHHHHc
Confidence            33  33332344444555543

>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1

Probab=96.17  E-value=0.0087  Score=55.06  Aligned_cols=68  Identities=15%  Similarity=0.127  Sum_probs=52.1

Q ss_pred             HHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcC-----CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccc
Q 021156          216 DERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYS-----PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSA  290 (316)
Q Consensus       216 ~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~-----~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~A  290 (316)
                      .+.++++.+.|++.+.+...         +.+.++++.+..     .+|+.++||| +++.+.++.+.|  ++.+.+|++
T Consensus       203 leea~eA~~aGaD~I~LDn~---------~~e~l~~av~~l~~~~~~v~ieASGGI-t~eni~~~a~tG--VD~IsvGsl  270 (285)
T 1o4u_A          203 LEDALRAVEAGADIVMLDNL---------SPEEVKDISRRIKDINPNVIVEVSGGI-TEENVSLYDFET--VDVISSSRL  270 (285)
T ss_dssp             HHHHHHHHHTTCSEEEEESC---------CHHHHHHHHHHHHHHCTTSEEEEEECC-CTTTGGGGCCTT--CCEEEEGGG
T ss_pred             HHHHHHHHHcCCCEEEECCC---------CHHHHHHHHHHhhccCCCceEEEECCC-CHHHHHHHHHcC--CCEEEEeHH
Confidence            37788888999998877663         344555544332     6899999999 458899998888  999999999


Q ss_pred             hhhccCc
Q 021156          291 LDIFGGN  297 (316)
Q Consensus       291 l~~~~g~  297 (316)
                      .  |.-+
T Consensus       271 t--~sa~  275 (285)
T 1o4u_A          271 T--LQEV  275 (285)
T ss_dssp             T--SSCC
T ss_pred             H--cCCC
Confidence            8  7544

>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A

Probab=96.16  E-value=0.0096  Score=55.13  Aligned_cols=66  Identities=15%  Similarity=0.183  Sum_probs=50.1

Q ss_pred             HHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhc-----CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          217 ERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKY-----SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       217 e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~-----~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      +.+++..+.|++.|.+..         .+.+.++++.+.     .++|+.++||| +.+.+.++.+.|  ++++.+|+++
T Consensus       208 ee~~~A~~aGaD~I~ld~---------~~~~~l~~~v~~l~~~~~~~~I~ASGGI-t~~ni~~~~~aG--aD~i~vGs~i  275 (299)
T 2jbm_A          208 QEAVQAAEAGADLVLLDN---------FKPEELHPTATVLKAQFPSVAVEASGGI-TLDNLPQFCGPH--IDVISMGMLT  275 (299)
T ss_dssp             HHHHHHHHTTCSEEEEES---------CCHHHHHHHHHHHHHHCTTSEEEEESSC-CTTTHHHHCCTT--CCEEECTHHH
T ss_pred             HHHHHHHHcCCCEEEECC---------CCHHHHHHHHHHhhccCCCeeEEEECCC-CHHHHHHHHHCC--CCEEEEChhh
Confidence            456667788999887643         235555544332     34899999999 899999999998  9999999988


Q ss_pred             hhccC
Q 021156          292 DIFGG  296 (316)
Q Consensus       292 ~~~~g  296 (316)
                        |.-
T Consensus       276 --~~a  278 (299)
T 2jbm_A          276 --QAA  278 (299)
T ss_dssp             --HSC
T ss_pred             --cCC
Confidence              653

>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}

Probab=96.15  E-value=0.0052  Score=55.39  Aligned_cols=49  Identities=18%  Similarity=0.270  Sum_probs=38.9

Q ss_pred             CCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCH-HHHHHHHHHh
Q 021156          132 YPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDL-ERLKDLVRVV  182 (316)
Q Consensus       132 ~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~-eli~ei~~~~  182 (316)
                      .+.+++|+|||+.+.+..+.++|||.+|+||+.++.+  || +.++++.+.+
T Consensus       194 ~~~~I~VDGGI~~~ti~~~~~aGAD~~V~GSaIf~a~--dp~~~i~~l~~~i  243 (246)
T 3inp_A          194 RDILLEIDGGVNPYNIAEIAVCGVNAFVAGSAIFNSD--SYKQTIDKMRDEL  243 (246)
T ss_dssp             SCCEEEEESSCCTTTHHHHHTTTCCEEEESHHHHTSS--CHHHHHHHHHHHH
T ss_pred             CCeeEEEECCcCHHHHHHHHHcCCCEEEEehHHhCCC--CHHHHHHHHHHHH
Confidence            3589999999999999999999999999999988631  24 4455555443

>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*

Probab=96.12  E-value=0.0052  Score=57.96  Aligned_cols=81  Identities=14%  Similarity=0.040  Sum_probs=59.5

Q ss_pred             CHHHHHHHHHHcCCCcceEEEec-------CCcccHHHHHHHHH-hCCCcEEEecCCC-HHHHHHHHHcC-CCEEEeCCe
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLG-------ADPLSKAAAIEALH-AYPGGLQVGGGIN-SDNSLSYIEEG-ATHVIVTSY  163 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLd-------a~~~~~~~i~~~v~-~~~~pl~vGGGIr-~e~~~~~l~~G-ad~VVigt~  163 (316)
                      +..++++.++++ ++.+|+..=.       ..+.......+.++ .+++|++..|||+ .++++++++.| ||.|.+|..
T Consensus       231 ~~~~~a~~l~~~-vd~i~vs~g~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~e~Ae~~l~~G~aD~V~iGR~  309 (343)
T 3kru_A          231 MMVEYINMIKDK-VDLIDVSSGGLLNVDINLYPGYQVKYAETIKKRCNIKTSAVGLITTQELAEEILSNERADLVALGRE  309 (343)
T ss_dssp             HHHHHHHHHTTT-CSEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHTCEEEEESSCCCHHHHHHHHHTTSCSEEEESHH
T ss_pred             HHHHHHHHhhcc-ccEEeccCCceEeeeecccCceeehHHHHHHHhcCcccceeeeeeHHHHHHHHHhchhhHHHHHHHH
Confidence            566788888887 7766664100       00111223334444 5789999999998 59999999998 999999999


Q ss_pred             eecCCCCCHHHHHHHH
Q 021156          164 VFNNGQMDLERLKDLV  179 (316)
Q Consensus       164 ~~~~~~~~~eli~ei~  179 (316)
                      ++.|    |+++.++.
T Consensus       310 ~lan----Pdl~~k~~  321 (343)
T 3kru_A          310 LLRN----PYWVLHTY  321 (343)
T ss_dssp             HHHC----TTHHHHTC
T ss_pred             HhcC----CeEEEEEe
Confidence            9998    99988876

>4e8g_A Enolase, mandelate racemase/muconate lactonizing enzyme, N domain protein; putative racemase, nysgrc, structural genomics, PSI-biology; 2.00A {Paracoccus denitrificans}

Probab=96.12  E-value=0.038  Score=52.88  Aligned_cols=137  Identities=7%  Similarity=-0.048  Sum_probs=93.9

Q ss_pred             HHHHHHHHcCCCE--EEeCC-eeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHH
Q 021156          145 DNSLSYIEEGATH--VIVTS-YVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLD  221 (316)
Q Consensus       145 e~~~~~l~~Gad~--VVigt-~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~  221 (316)
                      ++++++.+.|...  +=+|. ....+    .+.++.+.+.+|...+-+.+|+.          .+|...   +..++++.
T Consensus       170 ~~a~~~~~~G~~~~KlKvg~~~~~~d----~~~v~avR~a~gg~~~~L~vDaN----------~~w~~~---~A~~~~~~  232 (391)
T 4e8g_A          170 RIAAEKVAEGFPRLQIKIGGRPVEID----IETVRKVWERIRGTGTRLAVDGN----------RSLPSR---DALRLSRE  232 (391)
T ss_dssp             HHHHHHHHTTCSEEEEECCSSCHHHH----HHHHHHHHHHHTTTTCEEEEECT----------TCCCHH---HHHHHHHH
T ss_pred             HHHHHHHHcCCcEEEEcCCCCCHHHH----HHHHHHHHHHhCCCCCeEEEeCC----------CCCCHH---HHHHHHHH
Confidence            3466778889875  44565 22333    78888888888734567888973          356431   34556666


Q ss_pred             HHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHH
Q 021156          222 FLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYK  301 (316)
Q Consensus       222 ~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~  301 (316)
                      +.+.++ .+     . +-   -.|++.++++++.+++||.+.--+.+..|+.++++.+ .++.+.+--+-  .+|-....
T Consensus       233 L~~~~i-~i-----E-eP---~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~~~~~-a~d~v~ik~~~--~GGit~~~  299 (391)
T 4e8g_A          233 CPEIPF-VL-----E-QP---CNTLEEIAAIRGRVQHGIYLDESGEDLSTVIRAAGQG-LCDGFGMKLTR--IGGLQQMA  299 (391)
T ss_dssp             CTTSCE-EE-----E-SC---SSSHHHHHHHGGGCCSCEEESTTCCSHHHHHHHHHTT-CCSEEEEEHHH--HTSHHHHH
T ss_pred             HhhcCe-EE-----e-cC---CccHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcC-CCCEEEeCccc--cCCHHHHH
Confidence            666554 22     1 11   1389999999999999999999999999999999988 47777777666  66654555


Q ss_pred             HHHHHHHhhc
Q 021156          302 DVVAWHAQQE  311 (316)
Q Consensus       302 ~~~~~~~~~~  311 (316)
                      ++.++++++.
T Consensus       300 ~ia~~A~~~g  309 (391)
T 4e8g_A          300 AFRDICEARA  309 (391)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHcC
Confidence            5655655543

>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A

Probab=96.10  E-value=0.0057  Score=54.38  Aligned_cols=35  Identities=23%  Similarity=0.421  Sum_probs=32.5

Q ss_pred             CCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecC
Q 021156          133 PGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNN  167 (316)
Q Consensus       133 ~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~  167 (316)
                      +.+++|+|||+.+.+..+.++|||.+|+||+.++.
T Consensus       169 ~~~I~VdGGI~~~t~~~~~~aGAd~~VvGsaIf~a  203 (228)
T 3ovp_A          169 SLDIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRS  203 (228)
T ss_dssp             TCEEEEESSCSTTTHHHHHHHTCCEEEESHHHHTC
T ss_pred             CCCEEEeCCcCHHHHHHHHHcCCCEEEEeHHHhCC
Confidence            58999999999999999999999999999998864

>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2

Probab=96.09  E-value=0.0025  Score=56.69  Aligned_cols=35  Identities=31%  Similarity=0.563  Sum_probs=33.0

Q ss_pred             CCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecC
Q 021156          133 PGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNN  167 (316)
Q Consensus       133 ~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~  167 (316)
                      ++|+.++|||+.+++..+.++|||.+|+||+.++.
T Consensus       173 ~~~I~v~GGI~~~~~~~~~~aGad~vvvGSai~~a  207 (230)
T 1tqj_A          173 DPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNA  207 (230)
T ss_dssp             CCEEEEESSCCTTTTHHHHHHTCCEEEESHHHHTS
T ss_pred             CCcEEEECCcCHHHHHHHHHcCCCEEEECHHHHCC
Confidence            79999999999999999999999999999999874

>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*

Probab=96.08  E-value=0.026  Score=62.10  Aligned_cols=74  Identities=18%  Similarity=0.209  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHcCCCEEEEeecCCcccc---------CCCCH-HHHHHHhhcC-------CCcEEEEeCCCCHHHHHHHHH
Q 021156          215 LDERVLDFLASYADEFLVHGVDVEGKK---------LGIDD-ELVALLGKYS-------PIPVTYAGGVTTMADLEKIKV  277 (316)
Q Consensus       215 ~~e~a~~~~~~Ga~~ilvtdi~~dG~~---------~G~d~-eli~~l~~~~-------~iPVIasGGI~s~eDi~~l~~  277 (316)
                      ..+.++.+.+.|++.|++-..+. |+.         .|..+ ..+.++.+.+       ++|||++|||++-.|+.+++.
T Consensus      1006 i~~~A~~a~~AGAD~IvVsG~eG-GTgasp~~~~~~~G~Pt~~aL~ev~~al~~~glr~~VpVIAdGGIrtG~DVakALa 1084 (1479)
T 1ea0_A         1006 IGTIAAGVAKANADIILISGNSG-GTGASPQTSIKFAGLPWEMGLSEVHQVLTLNRLRHRVRLRTDGGLKTGRDIVIAAM 1084 (1479)
T ss_dssp             HHHHHHHHHHTTCSEEEEECTTC-CCSSEETTHHHHSCCCHHHHHHHHHHHHHTTTCTTTSEEEEESSCCSHHHHHHHHH
T ss_pred             hHHHHHHHHHcCCcEEEEcCCCC-CCCCCchhhhcCCchhHHHHHHHHHHHHHHcCCCCCceEEEECCCCCHHHHHHHHH
Confidence            45678889999999998755432 321         23333 4566665532       699999999999999999999


Q ss_pred             hCCCcCEEEEccch
Q 021156          278 AGIGRVDVTVGSAL  291 (316)
Q Consensus       278 ~G~g~~gVivG~Al  291 (316)
                      +|  +++|.+|+++
T Consensus      1085 LG--AdaV~iGTaf 1096 (1479)
T 1ea0_A         1085 LG--AEEFGIGTAS 1096 (1479)
T ss_dssp             TT--CSEEECCHHH
T ss_pred             cC--CCeeeEcHHH
Confidence            99  8999999998

>2hxt_A L-fuconate dehydratase; enolase superfamily, D-erythromohydr unknown function; HET: EHM; 1.70A {Xanthomonas campestris PV} PDB: 1yey_A 2hxu_A* 2hne_A

Probab=96.08  E-value=0.022  Score=55.28  Aligned_cols=138  Identities=13%  Similarity=0.115  Sum_probs=92.7

Q ss_pred             HHHHHHHHcCCCEEEe--CCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH
Q 021156          145 DNSLSYIEEGATHVIV--TSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF  222 (316)
Q Consensus       145 e~~~~~l~~Gad~VVi--gt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~  222 (316)
                      +.++++.+.|.+.+=+  |.....    +.+.++.+.+.+|++ +.+.+|+.   +       +|...   +..++++.+
T Consensus       204 ~~a~~~~~~Gf~~vKik~g~~~~~----d~e~v~avR~a~G~d-~~l~vDan---~-------~~~~~---~a~~~~~~l  265 (441)
T 2hxt_A          204 RLAKEAVADGFRTIKLKVGANVQD----DIRRCRLARAAIGPD-IAMAVDAN---Q-------RWDVG---PAIDWMRQL  265 (441)
T ss_dssp             HHHHHHHHTTCSEEEEECCSCHHH----HHHHHHHHHHHHCSS-SEEEEECT---T-------CCCHH---HHHHHHHTT
T ss_pred             HHHHHHHHcCCCEEEEccCCCHHH----HHHHHHHHHHhcCCC-CeEEEECC---C-------CCCHH---HHHHHHHHH
Confidence            4577788899987654  432233    378888888889854 55678873   2       45421   356777777


Q ss_pred             HHcCCCEEEEeecCCccccCCCCHHHHHHHhhcC-CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHH
Q 021156          223 LASYADEFLVHGVDVEGKKLGIDDELVALLGKYS-PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYK  301 (316)
Q Consensus       223 ~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~-~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~  301 (316)
                      .+.|+..+  -     .-....|++.++++++.+ ++||.+.+.+.+.+++.++++.+ .++.+.+--.-  .+|-....
T Consensus       266 ~~~~i~~i--E-----qP~~~~d~~~~~~l~~~~~~iPIa~dE~~~~~~~~~~~i~~~-~~d~v~ik~~~--~GGite~~  335 (441)
T 2hxt_A          266 AEFDIAWI--E-----EPTSPDDVLGHAAIRQGITPVPVSTGEHTQNRVVFKQLLQAG-AVDLIQIDAAR--VGGVNENL  335 (441)
T ss_dssp             GGGCCSCE--E-----CCSCTTCHHHHHHHHHHHTTSCEEECTTCCSHHHHHHHHHHT-CCSEECCCTTT--SSHHHHHH
T ss_pred             HhcCCCee--e-----CCCCHHHHHHHHHHHhhCCCCCEEEeCCcCCHHHHHHHHHcC-CCCEEEeCcce--eCCHHHHH
Confidence            77787743  1     112234899999998876 69999999999999999999988 36767665444  44433334


Q ss_pred             HHHHHHHhh
Q 021156          302 DVVAWHAQQ  310 (316)
Q Consensus       302 ~~~~~~~~~  310 (316)
                      ++.++++++
T Consensus       336 ~ia~~A~~~  344 (441)
T 2hxt_A          336 AILLLAAKF  344 (441)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHc
Confidence            444445443

>1r0m_A N-acylamino acid racemase; isomerase; 1.30A {Deinococcus radiodurans} SCOP: c.1.11.2 d.54.1.1 PDB: 1xpy_A* 1xs2_A 2ggj_A 2ggi_A 2ggh_A* 2ggg_A* 2fkp_A

Probab=96.07  E-value=0.033  Score=52.69  Aligned_cols=137  Identities=13%  Similarity=0.062  Sum_probs=94.5

Q ss_pred             HHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHH
Q 021156          145 DNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLA  224 (316)
Q Consensus       145 e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~  224 (316)
                      ++++++.+.|.+.+=+-..    ++.+.+.++.+.+.+ + .+-+.+|+.          .+|...   + .++++.+.+
T Consensus       154 ~~a~~~~~~G~~~iKik~~----~~~d~~~v~avr~a~-~-~~~l~vDan----------~~~~~~---~-~~~~~~l~~  213 (375)
T 1r0m_A          154 DLVRRHVEQGYRRIKLKIK----PGWDVQPVRATREAF-P-DIRLTVDAN----------SAYTLA---D-AGRLRQLDE  213 (375)
T ss_dssp             HHHHHHHHTTCSCEEEECB----TTBSHHHHHHHHHHC-T-TSCEEEECT----------TCCCGG---G-HHHHHTTGG
T ss_pred             HHHHHHHHhcccEEEEecC----hHHHHHHHHHHHHHc-C-CCeEEEeCC----------CCCCHH---H-HHHHHHHHh
Confidence            4567778889886544221    223488999998888 3 455788873          256432   4 678888888


Q ss_pred             cCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHH
Q 021156          225 SYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVV  304 (316)
Q Consensus       225 ~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~  304 (316)
                      .++..|  -    +. ....|++.++++++.+++||.+.+-+.+.+++.++++.+ .++.+.+--+-  .+|-....++.
T Consensus       214 ~~i~~i--E----qP-~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~-~~d~v~ik~~~--~GGit~~~~i~  283 (375)
T 1r0m_A          214 YDLTYI--E----QP-LAWDDLVDHAELARRIRTPLCLDESVASASDARKALALG-AGGVINLKVAR--VGGHAESRRVH  283 (375)
T ss_dssp             GCCSCE--E----CC-SCTTCSHHHHHHHHHCSSCEEESTTCCSHHHHHHHHHHT-SCSEEEECTTT--TTSHHHHHHHH
T ss_pred             CCCcEE--E----CC-CCcccHHHHHHHHHhCCCCEEecCccCCHHHHHHHHHhC-CCCEEEECcch--hcCHHHHHHHH
Confidence            887744  1    11 223488999999988899999999999999999999988 47777775555  45543445555


Q ss_pred             HHHHhhc
Q 021156          305 AWHAQQE  311 (316)
Q Consensus       305 ~~~~~~~  311 (316)
                      ++++++.
T Consensus       284 ~~A~~~g  290 (375)
T 1r0m_A          284 DVAQSFG  290 (375)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHcC
Confidence            5555543

>3dip_A Enolase; structural genomics, isomerase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, NYSGXRC, lyase; HET: SIC; 2.50A {Unidentified}

Probab=96.05  E-value=0.039  Score=53.04  Aligned_cols=142  Identities=13%  Similarity=0.081  Sum_probs=95.8

Q ss_pred             HHHHHHHHcCCCEEEe----------CCee-ecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceeccc
Q 021156          145 DNSLSYIEEGATHVIV----------TSYV-FNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDV  213 (316)
Q Consensus       145 e~~~~~l~~Gad~VVi----------gt~~-~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~  213 (316)
                      +.++++.+.|...+=+          |... ..+.+.+.+.++.+.+.+|+ .+-+.+|+   |       .+|...   
T Consensus       162 ~~a~~~~~~G~~~~K~~~~~~~~~K~G~~~~~~~~~~d~e~v~avR~a~g~-d~~l~vDa---N-------~~~~~~---  227 (410)
T 3dip_A          162 VLAESLVAEGYAAMKIWPFDDFASITPHHISLTDLKDGLEPFRKIRAAVGQ-RIEIMCEL---H-------SLWGTH---  227 (410)
T ss_dssp             HHHHHHHHTTCSEEEECTTHHHHTTCTTCCCHHHHHHHHHHHHHHHHHHTT-SSEEEEEC---T-------TCBCHH---
T ss_pred             HHHHHHHHcCCCEEEECCccCccccccCcCCHHHHHHHHHHHHHHHHHcCC-CceEEEEC---C-------CCCCHH---
Confidence            3467888999987765          2100 00000126788999999974 45677887   3       356532   


Q ss_pred             CHHHHHHHHHHcCCCEEEEeecCCccc-cCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchh
Q 021156          214 YLDERVLDFLASYADEFLVHGVDVEGK-KLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALD  292 (316)
Q Consensus       214 ~~~e~a~~~~~~Ga~~ilvtdi~~dG~-~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~  292 (316)
                      +...+++.+.+.++..+  -.     - ....|++.++++++.+++||.+.+.+.+.+++.++++.+ .++.+.+--+- 
T Consensus       228 ~A~~~~~~L~~~~i~~i--Eq-----P~~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~-~~d~v~~k~~~-  298 (410)
T 3dip_A          228 AAARICNALADYGVLWV--ED-----PIAKMDNIPAVADLRRQTRAPICGGENLAGTRRFHEMLCAD-AIDFVMLDLTW-  298 (410)
T ss_dssp             HHHHHHHHGGGGTCSEE--EC-----CBSCTTCHHHHHHHHHHHCCCEEECTTCCSHHHHHHHHHTT-CCSEEEECTTT-
T ss_pred             HHHHHHHHHHhcCCCEE--EC-----CCCCcccHHHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcC-CCCeEeecccc-
Confidence            35677888888887644  11     1 122389999999988899999999999999999999998 37777776555 


Q ss_pred             hccCcccHHHHHHHHHhh
Q 021156          293 IFGGNLAYKDVVAWHAQQ  310 (316)
Q Consensus       293 ~~~g~~~~~~~~~~~~~~  310 (316)
                       .+|-....++.++++++
T Consensus       299 -~GGit~~~~ia~~A~~~  315 (410)
T 3dip_A          299 -CGGLSEGRKIAALAETH  315 (410)
T ss_dssp             -SSCHHHHHHHHHHHHHT
T ss_pred             -cCCHHHHHHHHHHHHHc
Confidence             55644455555555554

>2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A*

Probab=96.04  E-value=0.0087  Score=57.63  Aligned_cols=84  Identities=17%  Similarity=0.164  Sum_probs=63.1

Q ss_pred             CHHHHHHHHHHcC------CCcceEEEe--cC--Ccc--------cHHHHHHHHH-hCCCcEEEecCCCHHHHHHHHHcC
Q 021156           94 SAAEFANLYKEDG------LTGGHAIML--GA--DPL--------SKAAAIEALH-AYPGGLQVGGGINSDNSLSYIEEG  154 (316)
Q Consensus        94 ~p~e~a~~~~~~G------~~~l~lvDL--da--~~~--------~~~~i~~~v~-~~~~pl~vGGGIr~e~~~~~l~~G  154 (316)
                      +..++|+.++++|      ++.+|+..=  +.  ..+        ......+.++ .+++|+++.|||+.++++++++.|
T Consensus       261 ~~~~la~~le~~G~~gg~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vk~~~~iPvi~~G~i~~~~a~~~l~~g  340 (402)
T 2hsa_B          261 LGLAVVERLNKIQLHSGSKLAYLHVTQPRYVAYGQTEAGRLGSEEEEARLMRTLRNAYQGTFICSGGYTRELGIEAVAQG  340 (402)
T ss_dssp             HHHHHHHHHHHHHHHHTSCCSEEEEECCCCCTTTTSSSTTTTHHHHHHHHHHHHHHHCSSCEEEESSCCHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcCCccCCceEEEEEecCccccccCCccccccCCcchHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHCC
Confidence            3567899999999      888877531  11  011        1122334444 588999999999669999999998


Q ss_pred             -CCEEEeCCeeecCCCCCHHHHHHHHHH
Q 021156          155 -ATHVIVTSYVFNNGQMDLERLKDLVRV  181 (316)
Q Consensus       155 -ad~VVigt~~~~~~~~~~eli~ei~~~  181 (316)
                       ||.|.+|..++.|    |+++.++.+.
T Consensus       341 ~aD~V~igR~~l~d----P~l~~k~~~g  364 (402)
T 2hsa_B          341 DADLVSYGRLFISN----PDLVMRIKLN  364 (402)
T ss_dssp             SCSEEEESHHHHHC----TTHHHHHHHT
T ss_pred             CCceeeecHHHHhC----chHHHHHHhC
Confidence             9999999999998    9999999763

>3t6c_A RSPA, putative MAND family dehydratase; enolase, mannonate dehydratase related protein, enzyme funct intitiative, lyase, hydro-lyases; HET: GCO; 1.60A {Pantoea ananatis} PDB: 3tw9_A 3twa_A 3twb_A*

Probab=96.03  E-value=0.028  Score=54.66  Aligned_cols=116  Identities=9%  Similarity=0.024  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHH
Q 021156          172 LERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVAL  251 (316)
Q Consensus       172 ~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~  251 (316)
                      .+.++.+.+.+|+ .+-+.+|+.          .+|...   +..++++.+.+.++..|  -    + -....|++.+++
T Consensus       227 ~~~v~avR~a~G~-d~~L~vDaN----------~~~~~~---~A~~~~~~L~~~~i~~i--E----e-P~~~~d~~~~~~  285 (440)
T 3t6c_A          227 PRLFDHLRNKLGF-SVELLHDAH----------ERITPI---NAIHMAKALEPYQLFFL--E----D-PVAPENTEWLKM  285 (440)
T ss_dssp             HHHHHHHHHHHCS-SSEEEEECT----------TCSCHH---HHHHHHHHTGGGCCSEE--E----C-SSCGGGGGGHHH
T ss_pred             HHHHHHHHHhcCC-CCeEEEECC----------CCCCHH---HHHHHHHHhhhcCCCEE--E----C-CCChhhHHHHHH
Confidence            5678888899975 456788873          356532   35677888888887754  1    1 111226788899


Q ss_pred             HhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHHhhc
Q 021156          252 LGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQQE  311 (316)
Q Consensus       252 l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~~~~  311 (316)
                      +++.+++||.+..-+.+.+++.++++.+ .++.+.+--+-  .+|-....++.++++++.
T Consensus       286 l~~~~~iPIa~dE~~~~~~~~~~~i~~~-a~d~v~~k~~~--~GGit~~~~ia~~A~~~g  342 (440)
T 3t6c_A          286 LRQQSSTPIAMGELFVNVNEWKPLIDNK-LIDYIRCHISS--IGGITPAKKIAIYSELNG  342 (440)
T ss_dssp             HHHHCCSCEEECTTCCSHHHHHHHHHTT-CCSEECCCGGG--GTSHHHHHHHHHHHHHTT
T ss_pred             HHhhcCCCEEeCcccCCHHHHHHHHHcC-Cccceeechhh--hCCHHHHHHHHHHHHHcC
Confidence            9988999999999999999999999988 47777776666  666555556666665543

>1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A*

Probab=96.03  E-value=0.0061  Score=58.16  Aligned_cols=83  Identities=16%  Similarity=0.121  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHcCCCcceEEEecCC--cc---cHHHHHHHHHhCCCcEEEecCCCHHHHHHHHHcC-CCEEEeCCeeecCC
Q 021156           95 AAEFANLYKEDGLTGGHAIMLGAD--PL---SKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEG-ATHVIVTSYVFNNG  168 (316)
Q Consensus        95 p~e~a~~~~~~G~~~l~lvDLda~--~~---~~~~i~~~v~~~~~pl~vGGGIr~e~~~~~l~~G-ad~VVigt~~~~~~  168 (316)
                      ..++++.++++|++.+|+..=...  ..   +...+.++.+.+++|++.+|||+.++++++++.| ||.|.+|..++.| 
T Consensus       258 ~~~la~~le~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~vr~~~~iPvi~~G~i~~~~a~~~l~~g~aD~V~~gR~~l~~-  336 (376)
T 1icp_A          258 GLYMVESLNKYDLAYCHVVEPRMKTAWEKIECTESLVPMRKAYKGTFIVAGGYDREDGNRALIEDRADLVAYGRLFISN-  336 (376)
T ss_dssp             HHHHHHHHGGGCCSEEEEECCSCCC------CCCCSHHHHHHCCSCEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHC-
T ss_pred             HHHHHHHHHHcCCCEEEEcCCcccCCCCccccHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHCCCCcEEeecHHHHhC-
Confidence            457888888899998887531100  01   1111223334578999999999669999999998 9999999999998 


Q ss_pred             CCCHHHHHHHHHH
Q 021156          169 QMDLERLKDLVRV  181 (316)
Q Consensus       169 ~~~~eli~ei~~~  181 (316)
                         |+++.++.+.
T Consensus       337 ---P~l~~k~~~g  346 (376)
T 1icp_A          337 ---PDLPKRFELN  346 (376)
T ss_dssp             ---TTHHHHHHHT
T ss_pred             ---ccHHHHHHcC
Confidence               9999999763

>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*

Probab=96.00  E-value=0.025  Score=51.57  Aligned_cols=96  Identities=10%  Similarity=-0.022  Sum_probs=67.3

Q ss_pred             CCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCE
Q 021156          205 DRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVD  284 (316)
Q Consensus       205 ~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~g  284 (316)
                      +|+-. .+.++.+.++.+++.|+..+-+  .+.++.++| .++.++.+++.+++||+..+.+-+..++..+...|  +++
T Consensus        65 ~g~i~-~~~~p~~~A~~y~~~GA~~isv--ltd~~~f~G-s~~~l~~ir~~v~lPvl~kdfiid~~qv~~A~~~G--AD~  138 (272)
T 3qja_A           65 AGALA-TIADPAKLAQAYQDGGARIVSV--VTEQRRFQG-SLDDLDAVRASVSIPVLRKDFVVQPYQIHEARAHG--ADM  138 (272)
T ss_dssp             ---------CHHHHHHHHHHTTCSEEEE--ECCGGGHHH-HHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTT--CSE
T ss_pred             CCccC-CCCCHHHHHHHHHHcCCCEEEE--ecChhhcCC-CHHHHHHHHHhCCCCEEECccccCHHHHHHHHHcC--CCE
Confidence            45432 3458999999999999998733  344445444 24577788888899999999999999999999998  999


Q ss_pred             EEEccchhhccCcccHHHHHHHHHh
Q 021156          285 VTVGSALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       285 VivG~Al~~~~g~~~~~~~~~~~~~  309 (316)
                      |+++.+.  .. .-.++++.+.++.
T Consensus       139 VlLi~a~--l~-~~~l~~l~~~a~~  160 (272)
T 3qja_A          139 LLLIVAA--LE-QSVLVSMLDRTES  160 (272)
T ss_dssp             EEEEGGG--SC-HHHHHHHHHHHHH
T ss_pred             EEEeccc--CC-HHHHHHHHHHHHH
Confidence            9999887  54 2235555555544

>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica}

Probab=95.97  E-value=0.027  Score=50.38  Aligned_cols=119  Identities=20%  Similarity=0.203  Sum_probs=70.1

Q ss_pred             HHHHHHHHcCCCE--EEeCCeeecCCCC--CHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHH
Q 021156          145 DNSLSYIEEGATH--VIVTSYVFNNGQM--DLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVL  220 (316)
Q Consensus       145 e~~~~~l~~Gad~--VVigt~~~~~~~~--~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~  220 (316)
                      .+++.+++.|||-  +|++-..+.+|+.  -.+.+.++++..+ +.+ +.+          +.-.+..  ++-.....++
T Consensus        99 ~Ea~~Ai~~GAdEIDmViNig~lk~g~~~~v~~eI~~v~~a~~-~~~-lKV----------IlEt~~L--t~eei~~a~~  164 (239)
T 3ngj_A           99 YETKVAVEQGAEEVDMVINIGMVKAKKYDDVEKDVKAVVDASG-KAL-TKV----------IIECCYL--TNEEKVEVCK  164 (239)
T ss_dssp             HHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHHT-TSE-EEE----------ECCGGGS--CHHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEEEeehHHhccccHHHHHHHHHHHHHHhc-CCc-eEE----------EEecCCC--CHHHHHHHHH
Confidence            5788899999996  4555444433321  1345555666664 222 111          1111211  1112344556


Q ss_pred             HHHHcCCCEEEEeecCCcccc-CCCCHHHHHHHhhc--CCCcEEEEeCCCCHHHHHHHHHhCCCcC
Q 021156          221 DFLASYADEFLVHGVDVEGKK-LGIDDELVALLGKY--SPIPVTYAGGVTTMADLEKIKVAGIGRV  283 (316)
Q Consensus       221 ~~~~~Ga~~ilvtdi~~dG~~-~G~d~eli~~l~~~--~~iPVIasGGI~s~eDi~~l~~~G~g~~  283 (316)
                      ...+.|++.|= |+   .|.. .|..++-++.+++.  .+++|-++|||++.+|+.+++++|  ++
T Consensus       165 ia~~aGADfVK-TS---TGf~~ggAt~~dv~lmr~~vg~~v~VKasGGIrt~~da~~~i~aG--A~  224 (239)
T 3ngj_A          165 RCVAAGAEYVK-TS---TGFGTHGATPEDVKLMKDTVGDKALVKAAGGIRTFDDAMKMINNG--AS  224 (239)
T ss_dssp             HHHHHTCSEEE-CC---CSSSSCCCCHHHHHHHHHHHGGGSEEEEESSCCSHHHHHHHHHTT--EE
T ss_pred             HHHHHCcCEEE-CC---CCCCCCCCCHHHHHHHHHhhCCCceEEEeCCCCCHHHHHHHHHhc--cc
Confidence            66789999663 22   2432 34455555555443  468999999999999999999999  65

>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}

Probab=95.97  E-value=0.041  Score=50.58  Aligned_cols=67  Identities=21%  Similarity=0.230  Sum_probs=51.7

Q ss_pred             HHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhh
Q 021156          216 DERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDI  293 (316)
Q Consensus       216 ~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~  293 (316)
                      .+.++++.+.|++.+.+..+..         +.+++..+..  ++|+.++|||. ++.+.++.+.|  ++++.+|++.  
T Consensus       206 ~eea~eA~~aGaD~I~ld~~~~---------~~~k~av~~v~~~ipi~AsGGIt-~eni~~~a~tG--vD~IsVgs~~--  271 (286)
T 1x1o_A          206 LEELEEALEAGADLILLDNFPL---------EALREAVRRVGGRVPLEASGNMT-LERAKAAAEAG--VDYVSVGALT--  271 (286)
T ss_dssp             HHHHHHHHHHTCSEEEEESCCH---------HHHHHHHHHHTTSSCEEEESSCC-HHHHHHHHHHT--CSEEECTHHH--
T ss_pred             HHHHHHHHHcCCCEEEECCCCH---------HHHHHHHHHhCCCCeEEEEcCCC-HHHHHHHHHcC--CCEEEEcHHH--
Confidence            3567778889999988777533         3444544333  68999999995 89999999999  9999999988  


Q ss_pred             ccC
Q 021156          294 FGG  296 (316)
Q Consensus       294 ~~g  296 (316)
                      |.-
T Consensus       272 ~~a  274 (286)
T 1x1o_A          272 HSA  274 (286)
T ss_dssp             HSC
T ss_pred             cCC
Confidence            653

>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*

Probab=95.90  E-value=0.0075  Score=57.92  Aligned_cols=70  Identities=20%  Similarity=0.167  Sum_probs=51.4

Q ss_pred             HHHHHHHHcCCCcceEEEe-----cCCcccHHHHHHHHHhC--CCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeeec
Q 021156           97 EFANLYKEDGLTGGHAIML-----GADPLSKAAAIEALHAY--PGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        97 e~a~~~~~~G~~~l~lvDL-----da~~~~~~~i~~~v~~~--~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      +.|+...++|++.+.+-.=     +.+......+.++.+.+  .+||+..|||++ +|+.+++..|||.|.+|+.++.
T Consensus       264 e~A~~a~~aGad~I~vs~~ggr~~~~g~~~~~~l~~v~~av~~~ipVia~GGI~~g~Dv~kalalGAd~V~iGr~~l~  341 (392)
T 2nzl_A          264 DDAREAVKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVW  341 (392)
T ss_dssp             HHHHHHHHTTCCEEEECCGGGTSSTTCCCHHHHHHHHHHHHTTSSEEEECSSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred             HHHHHHHHcCCCEEEeCCCCCCcCCCCcChHHHHHHHHHHcCCCCEEEEECCCCCHHHHHHHHHhCCCeeEECHHHHH
Confidence            4788889999997766321     11223334444444444  599999999995 9999999999999999997765

>4dxk_A Mandelate racemase / muconate lactonizing enzyme protein; enolase, mandelate racemase subgroup, enzyme function initia EFI; 1.25A {Agrobacterium tumefaciens} PDB: 4dx3_A 2pod_A

Probab=95.89  E-value=0.038  Score=52.94  Aligned_cols=142  Identities=12%  Similarity=0.128  Sum_probs=93.6

Q ss_pred             HHHHHHHHcCCCEEEeCCe------------eecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecc
Q 021156          145 DNSLSYIEEGATHVIVTSY------------VFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSD  212 (316)
Q Consensus       145 e~~~~~l~~Gad~VVigt~------------~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~  212 (316)
                      +.++++.+.|...+=+--.            ...+.+.+.+.++.+.+.+| ..+.+.+|.   |       .+|...  
T Consensus       158 ~~a~~~~~~G~~~~Kik~g~~~~~~~~~g~~~~~~~~~d~~~v~avR~a~g-~~~~l~vDa---N-------~~~~~~--  224 (400)
T 4dxk_A          158 ELAHSLLEDGITAMKIWPFDAAAEKTRGQYISMPDLKSALEPFEKIRKAVG-DKMDIMVEF---H-------SMWQLL--  224 (400)
T ss_dssp             HHHHHHHHTTCCEEEECTTHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHG-GGSEEEEEC---T-------TCBCHH--
T ss_pred             HHHHHHHHhCCCEEEEcCCCccccccccCcCCHHHHHHHHHHHHHHHHHcC-CCceEEEEC---C-------CCCCHH--
Confidence            4478889999887654211            00000113678899999997 455677887   3       356532  


Q ss_pred             cCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchh
Q 021156          213 VYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALD  292 (316)
Q Consensus       213 ~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~  292 (316)
                       +...+++.+.+.++..+  ..     -....|++.++++++.+++||.+...+.+.++++++++.+ .++.+.+--+- 
T Consensus       225 -~A~~~~~~L~~~~i~~i--Ee-----P~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~-a~d~v~~d~~~-  294 (400)
T 4dxk_A          225 -PAMQIAKALTPYQTFWH--ED-----PIKMDSLSSLTRYAAVSPAPISASETLGSRWAFRDLLETG-AAGVVMLDISW-  294 (400)
T ss_dssp             -HHHHHHHHTGGGCCSEE--EC-----CBCTTSGGGHHHHHHHCSSCEEECTTCCHHHHHHHHHHTT-CCCEEEECTTT-
T ss_pred             -HHHHHHHHHhhcCCCEE--Ec-----CCCcccHHHHHHHHHhCCCCEEecCCcCCHHHHHHHHHcC-CCCEEEeCccc-
Confidence             35677888888887643  21     1122377888999988999999999999999999999998 36666665554 


Q ss_pred             hccCcccHHHHHHHHHhh
Q 021156          293 IFGGNLAYKDVVAWHAQQ  310 (316)
Q Consensus       293 ~~~g~~~~~~~~~~~~~~  310 (316)
                       .+|-....++.++++++
T Consensus       295 -~GGit~~~kia~~A~~~  311 (400)
T 4dxk_A          295 -CGGLSEARKIASMAEAW  311 (400)
T ss_dssp             -TTHHHHHHHHHHHHHHT
T ss_pred             -cCCHHHHHHHHHHHHHc
Confidence             44533444455555543

>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}

Probab=95.87  E-value=0.012  Score=55.90  Aligned_cols=72  Identities=19%  Similarity=0.216  Sum_probs=52.2

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCC------------cccHHHHHHH---HHhCCCcEEEecCCC-HHHHHHHHHcCCCE
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGAD------------PLSKAAAIEA---LHAYPGGLQVGGGIN-SDNSLSYIEEGATH  157 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~------------~~~~~~i~~~---v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~  157 (316)
                      ++ +.|+.+.++|++.+.+ =...+            .+....+.++   ++.+++|++..|||+ .+|+.+++.+||+.
T Consensus       155 t~-e~A~~l~~aGaD~I~V-G~~~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~  232 (361)
T 3khj_A          155 TE-EATKELIENGADGIKV-GIGPGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASS  232 (361)
T ss_dssp             SH-HHHHHHHHTTCSEEEE-CSSCCTTCCHHHHTCBCCCHHHHHHHHHHHHHHHTCCEEEESCCCSHHHHHHHHHHTCSE
T ss_pred             CH-HHHHHHHHcCcCEEEE-ecCCCcCCCcccccCCCCCcHHHHHHHHHHHhhcCCeEEEECCCCCHHHHHHHHHcCCCE
Confidence            44 4788888999998776 11110            1222233333   234689999999998 69999999999999


Q ss_pred             EEeCCeeecC
Q 021156          158 VIVTSYVFNN  167 (316)
Q Consensus       158 VVigt~~~~~  167 (316)
                      |.+||.+...
T Consensus       233 V~vGs~~~~t  242 (361)
T 3khj_A          233 VMIGSILAGT  242 (361)
T ss_dssp             EEESTTTTTB
T ss_pred             EEEChhhhcC
Confidence            9999998876

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=95.86  E-value=0.021  Score=56.66  Aligned_cols=70  Identities=19%  Similarity=0.155  Sum_probs=51.1

Q ss_pred             HHHHHHHHcCCCcceEEEecCC------------cccHHHHHH---HHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEe
Q 021156           97 EFANLYKEDGLTGGHAIMLGAD------------PLSKAAAIE---ALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIV  160 (316)
Q Consensus        97 e~a~~~~~~G~~~l~lvDLda~------------~~~~~~i~~---~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVi  160 (316)
                      +.|+.+.++|++.+.+ ...++            .+....+.+   .++..++|++.+|||+ .+|+.+++.+||+.|.+
T Consensus       309 e~a~~~~~aGad~i~v-g~g~gsi~~~~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GA~~V~v  387 (511)
T 3usb_A          309 EATKALIEAGANVVKV-GIGPGSICTTRVVAGVGVPQLTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVML  387 (511)
T ss_dssp             HHHHHHHHHTCSEEEE-CSSCSTTCCHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred             HHHHHHHHhCCCEEEE-CCCCccccccccccCCCCCcHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHhCchhhee
Confidence            5788888889987764 32221            122333333   3445689999999998 59999999999999999


Q ss_pred             CCeeecC
Q 021156          161 TSYVFNN  167 (316)
Q Consensus       161 gt~~~~~  167 (316)
                      |+.+...
T Consensus       388 Gs~~~~~  394 (511)
T 3usb_A          388 GSMFAGV  394 (511)
T ss_dssp             STTTTTB
T ss_pred             cHHHhcC
Confidence            9988664

>4aaj_A N-(5'-phosphoribosyl)anthranilate isomerase; alpha/beta-barrel, hyperthermophilic, phosphoribo isomerase; 1.75A {Pyrococcus furiosus}

Probab=95.85  E-value=0.88  Score=40.18  Aligned_cols=191  Identities=17%  Similarity=0.143  Sum_probs=112.8

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCCc--ccHHHHHHHHHhCCCcE-EEecCCCHHH-HHHHHHcCCCEEEeCCeeecCC
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGADP--LSKAAAIEALHAYPGGL-QVGGGINSDN-SLSYIEEGATHVIVTSYVFNNG  168 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~~--~~~~~i~~~v~~~~~pl-~vGGGIr~e~-~~~~l~~Gad~VVigt~~~~~~  168 (316)
                      .+|.++ + ..++|++.+=+|--...+  ...+...++++....|+ .|+=....++ ++.+-+.+.|.|=+-..  +  
T Consensus        29 t~~ed~-~-a~~~gaD~iGfIf~~~SpR~V~~~~A~~i~~~~~~~~~~v~v~v~~~ei~~~i~~~~ld~vQLHG~--E--  102 (228)
T 4aaj_A           29 KSLEEL-E-IVEKHADATGVVVNSNSKRRIPLEKAREIIENSAIPVFLVSTMVGFSEWAMAIERTGAQYIQVHSN--A--  102 (228)
T ss_dssp             CSHHHH-H-HHHTTCSEEEEECSSSSTTBCCHHHHHHHHHHCSSCEEEEECCCCHHHHHHHHHHHTCSEEEECSC--C--
T ss_pred             CcHHHH-H-HHHcCCCEEEEEecCCCCCCCCHHHHHHHHHhhCCCCEEEeccCchHHHHHHHHhccchheecccc--c--
Confidence            356654 4 356898877776544333  24455556666555544 4555556544 55555678887765211  2  


Q ss_pred             CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHH
Q 021156          169 QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDEL  248 (316)
Q Consensus       169 ~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~el  248 (316)
                        +|+.++++.+.++ -.++-++.+.  ..         ......+.......+....++.+++ |- .-|+.+.+||++
T Consensus       103 --~~~~~~~l~~~~~-~~viKa~~v~--~~---------~~~~~~~~~~~~~~~~~~~~d~~Ll-Ds-~GGtG~~fDW~~  166 (228)
T 4aaj_A          103 --LPQTIDTLKKEFG-VFVMKAFRVP--TI---------SKNPEEDANRLLSEISRYNADMVLL-DT-GAGSGKLHDLRV  166 (228)
T ss_dssp             --CHHHHHHHHHHHC-CEEEEEEECC--SS---------CSCHHHHHHHHHHHHHHSCCSEEEE-EC--------CCCHH
T ss_pred             --CHHHHHHHhhccC-ceEEEEEEec--cc---------ccchhhhHHHHHHHHhccCCCEEcc-CC-CCCCcCcCChHH
Confidence              3899999999886 4565555543  10         0001112223344555667888775 42 357777889999


Q ss_pred             HHHHhhcCCCcEEEEeCCCCHHHHHHHHH-hCCCcCEEEEccchhhccCcccHHHHHHHHHhhc
Q 021156          249 VALLGKYSPIPVTYAGGVTTMADLEKIKV-AGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQQE  311 (316)
Q Consensus       249 i~~l~~~~~iPVIasGGI~s~eDi~~l~~-~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~~~~  311 (316)
                      ++.+..  +.|++.+||+. ++.+.++.+ .+  ..||=|.+.+= -.|.=+.+.+.++.++-+
T Consensus       167 ~~~~~~--~~p~iLAGGL~-peNV~~Ai~~~~--P~gVDVsSGVE-s~G~KD~~KI~~Fi~~vr  224 (228)
T 4aaj_A          167 SSLVAR--KIPVIVAGGLN-AENVEEVIKVVK--PYGVDVSSGVE-KYGIKDPKLVEEFVRRAK  224 (228)
T ss_dssp             HHHHHH--HSCEEEESSCC-TTTHHHHHHHHC--CSEEEESGGGE-ETTEECHHHHHHHHHHHH
T ss_pred             HHHhhh--cCCeEEECCCC-HHHHHHHHHHhC--CCEEEeCCCCC-CCCCcCHHHHHHHHHHHh
Confidence            988865  36999999996 467777665 45  78888999881 114446667777766543

>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*

Probab=95.81  E-value=0.046  Score=60.23  Aligned_cols=74  Identities=19%  Similarity=0.156  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHcCCCEEEEeecCCcccc---------CCCCH-HHHHHHhhcC-------CCcEEEEeCCCCHHHHHHHHH
Q 021156          215 LDERVLDFLASYADEFLVHGVDVEGKK---------LGIDD-ELVALLGKYS-------PIPVTYAGGVTTMADLEKIKV  277 (316)
Q Consensus       215 ~~e~a~~~~~~Ga~~ilvtdi~~dG~~---------~G~d~-eli~~l~~~~-------~iPVIasGGI~s~eDi~~l~~  277 (316)
                      ..+.++.+.+.|++.|++-..+ -|+.         .|..+ ..+.++.+.+       ++|||++|||++-.|+.+++.
T Consensus      1041 i~~~A~~a~kAGAD~IvVsG~e-GGTgasp~~~~~~~GlPt~~aL~ev~~al~~~glr~~IpVIAdGGIrtG~DVakALa 1119 (1520)
T 1ofd_A         1041 IGTIAAGVAKANADIIQISGHD-GGTGASPLSSIKHAGSPWELGVTEVHRVLMENQLRDRVLLRADGGLKTGWDVVMAAL 1119 (1520)
T ss_dssp             HHHHHHHHHHTTCSEEEEECTT-CCCSSEEHHHHHHBCCCHHHHHHHHHHHHHHTTCGGGCEEEEESSCCSHHHHHHHHH
T ss_pred             hHHHHHHHHHcCCCEEEEeCCC-CccCCCcchhhcCCchhHHHHHHHHHHHHHhcCCCCCceEEEECCCCCHHHHHHHHH
Confidence            4567888999999998874443 2321         23433 4555654432       699999999999999999999


Q ss_pred             hCCCcCEEEEccch
Q 021156          278 AGIGRVDVTVGSAL  291 (316)
Q Consensus       278 ~G~g~~gVivG~Al  291 (316)
                      +|  +++|.+|+++
T Consensus      1120 LG--AdaV~iGTaf 1131 (1520)
T 1ofd_A         1120 MG--AEEYGFGSIA 1131 (1520)
T ss_dssp             TT--CSEEECSHHH
T ss_pred             cC--CCeeEEcHHH
Confidence            99  8999999987

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=95.81  E-value=0.015  Score=62.26  Aligned_cols=87  Identities=23%  Similarity=0.261  Sum_probs=62.3

Q ss_pred             cCHHHHHHHHHHcCCCcceEE---------Eec----------C---C-----cccH----HHHHHHHHhC-CCcEEEec
Q 021156           93 KSAAEFANLYKEDGLTGGHAI---------MLG----------A---D-----PLSK----AAAIEALHAY-PGGLQVGG  140 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lv---------DLd----------a---~-----~~~~----~~i~~~v~~~-~~pl~vGG  140 (316)
                      .+..++|+.+.+.|+++++++         |++          +   .     ....    ..+.++.+.+ ++||+..|
T Consensus       715 ~~~~~~a~~~~~~G~d~i~v~Nt~~~~~~~~~~~~~~~~~~~~gr~~~gg~sg~~~~~~~~~~v~~v~~~~~~ipvi~~G  794 (1025)
T 1gte_A          715 TDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALPGFPILATG  794 (1025)
T ss_dssp             SCHHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHHHHHHHHHHSTTCCEEEES
T ss_pred             HHHHHHHHHHHHcCCCEEEEeccccccccccccccccccccccccccCCCCCcccchhHHHHHHHHHHHHcCCCCEEEec
Confidence            367889999999999999983         432          1   0     1121    2233333456 79999999


Q ss_pred             CCCH-HHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHh
Q 021156          141 GINS-DNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVV  182 (316)
Q Consensus       141 GIr~-e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~  182 (316)
                      ||++ +|+.+++.+||+.|.+|+.++.++   +.+++++.+.+
T Consensus       795 GI~s~~da~~~l~~Ga~~v~vg~~~l~~~---~~~~~~~~~~l  834 (1025)
T 1gte_A          795 GIDSAESGLQFLHSGASVLQVCSAVQNQD---FTVIQDYCTGL  834 (1025)
T ss_dssp             SCCSHHHHHHHHHTTCSEEEESHHHHTSC---TTHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHcCCCEEEEeeccccCC---ccHHHHHHHHH
Confidence            9985 999999999999999999998631   55555555443

>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*

Probab=95.80  E-value=0.0098  Score=59.06  Aligned_cols=70  Identities=19%  Similarity=0.101  Sum_probs=49.9

Q ss_pred             HHHHHHHHcCCCcceEEEecC-----CcccHHHHHHHHHhC-------CCcEEEecCCCH-HHHHHHHHcCCCEEEeCCe
Q 021156           97 EFANLYKEDGLTGGHAIMLGA-----DPLSKAAAIEALHAY-------PGGLQVGGGINS-DNSLSYIEEGATHVIVTSY  163 (316)
Q Consensus        97 e~a~~~~~~G~~~l~lvDLda-----~~~~~~~i~~~v~~~-------~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~  163 (316)
                      +.|+...++|++.+.+-.-.+     .......+.++.+.+       .+||++.|||++ +|+.+++.+||+.|.+|+.
T Consensus       355 e~A~~a~~aGad~I~vs~hgG~~~d~~~~~~~~l~~v~~~v~~~~~~~~ipVia~GGI~~g~Dv~kaLalGAdaV~iGr~  434 (511)
T 1kbi_A          355 EDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRP  434 (511)
T ss_dssp             HHHHHHHHTTCSEEEECCTTTTSSTTCCCHHHHHHHHHHHHHTTTCBTTBEEEEESSCCSHHHHHHHHHHTCSEEEECHH
T ss_pred             HHHHHHHHcCCCEEEEcCCCCccCCCCCchHHHHHHHHHHHHhhccCCCcEEEEECCCCCHHHHHHHHHcCCCEEEECHH
Confidence            578888899999777633111     112222333333333       699999999995 9999999999999999997


Q ss_pred             eec
Q 021156          164 VFN  166 (316)
Q Consensus       164 ~~~  166 (316)
                      ++.
T Consensus       435 ~l~  437 (511)
T 1kbi_A          435 FLY  437 (511)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            765

>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*

Probab=95.80  E-value=0.011  Score=54.50  Aligned_cols=67  Identities=12%  Similarity=0.169  Sum_probs=37.9

Q ss_pred             HHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcC--------CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEc
Q 021156          217 ERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYS--------PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVG  288 (316)
Q Consensus       217 e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~--------~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG  288 (316)
                      +.+++..+.|++.|.+..         .+.+.++++.+..        ++|+.++||| +.+.+.++.+.|  ++++.+|
T Consensus       210 ee~~~A~~aGaD~I~ld~---------~~~~~l~~~v~~l~~~~~g~~~v~I~ASGGI-t~~ni~~~~~~G--vD~i~vG  277 (294)
T 3c2e_A          210 DEATEAIEAGADVIMLDN---------FKGDGLKMCAQSLKNKWNGKKHFLLECSGGL-NLDNLEEYLCDD--IDIYSTS  277 (294)
T ss_dssp             HHHHHHHHHTCSEEECCC------------------------------CCEEEEECCC-CC------CCCS--CSEEECG
T ss_pred             HHHHHHHHcCCCEEEECC---------CCHHHHHHHHHHhcccccCCCCeEEEEECCC-CHHHHHHHHHcC--CCEEEEe
Confidence            445566678999876533         1234444443332        3899999999 889999999998  9999999


Q ss_pred             cchhhccCc
Q 021156          289 SALDIFGGN  297 (316)
Q Consensus       289 ~Al~~~~g~  297 (316)
                      +++  |.-+
T Consensus       278 s~i--~~a~  284 (294)
T 3c2e_A          278 SIH--QGTP  284 (294)
T ss_dssp             GGT--SSCC
T ss_pred             chh--cCCC
Confidence            998  7533

>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}

Probab=95.80  E-value=0.013  Score=52.50  Aligned_cols=44  Identities=14%  Similarity=0.226  Sum_probs=36.9

Q ss_pred             CCcEEEecCCCHHHHHHHHH--cCCCEEEeCCeeecCCCCCH-HHHHHHH
Q 021156          133 PGGLQVGGGINSDNSLSYIE--EGATHVIVTSYVFNNGQMDL-ERLKDLV  179 (316)
Q Consensus       133 ~~pl~vGGGIr~e~~~~~l~--~Gad~VVigt~~~~~~~~~~-eli~ei~  179 (316)
                      ++|++|+|||+.+.+..+.+  +|||.+|+||+.++.   || +.++++.
T Consensus       187 ~~~I~vdGGI~~~~~~~~~~~~aGad~~VvGSaIf~~---d~~~~~~~l~  233 (237)
T 3cu2_A          187 EKLINIDGSMTLELAKYFKQGTHQIDWLVSGSALFSG---ELKTNLKVWK  233 (237)
T ss_dssp             GCEEEEESSCCHHHHHHHHHSSSCCCCEEECGGGGSS---CHHHHHHHHH
T ss_pred             CceEEEECCcCHHHHHHHHHhCCCCcEEEEeeHHhCC---CHHHHHHHHH
Confidence            58999999999999999999  999999999999873   35 3444443

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=95.80  E-value=0.015  Score=57.56  Aligned_cols=71  Identities=24%  Similarity=0.181  Sum_probs=50.8

Q ss_pred             HHHHHHHHcCCCcceEEEecCC-----------cccHHHHHHHHH---hCCCcEEEecCCC-HHHHHHHHHcCCCEEEeC
Q 021156           97 EFANLYKEDGLTGGHAIMLGAD-----------PLSKAAAIEALH---AYPGGLQVGGGIN-SDNSLSYIEEGATHVIVT  161 (316)
Q Consensus        97 e~a~~~~~~G~~~l~lvDLda~-----------~~~~~~i~~~v~---~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVig  161 (316)
                      +.|+.+.++|++.+.+-.=.+.           .+....+.++.+   ..++|++.+|||+ .+|+.+++.+||+.|.+|
T Consensus       284 e~a~~l~~aGaD~I~Vg~g~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GAd~V~iG  363 (496)
T 4fxs_A          284 EGARALIEAGVSAVKVGIGPGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVG  363 (496)
T ss_dssp             HHHHHHHHHTCSEEEECSSCCTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred             HHHHHHHHhCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHHHcCCCeEEec
Confidence            5788888899987664211111           122333334333   4579999999998 599999999999999999


Q ss_pred             CeeecC
Q 021156          162 SYVFNN  167 (316)
Q Consensus       162 t~~~~~  167 (316)
                      +.+...
T Consensus       364 s~f~~t  369 (496)
T 4fxs_A          364 SMFAGT  369 (496)
T ss_dssp             TTTTTB
T ss_pred             HHHhcC
Confidence            998764

>2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A

Probab=95.75  E-value=0.11  Score=48.47  Aligned_cols=116  Identities=14%  Similarity=0.115  Sum_probs=83.9

Q ss_pred             HHHHHHHHcCCCEEEe--CCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH
Q 021156          145 DNSLSYIEEGATHVIV--TSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF  222 (316)
Q Consensus       145 e~~~~~l~~Gad~VVi--gt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~  222 (316)
                      +.++++.+.|.+.+=+  |.....+    .+.++.+.+. |+ .+.+.+|+.          .+|...   +..++++.+
T Consensus       145 ~~a~~~~~~Gf~~iKik~g~~~~~d----~~~v~avr~~-g~-~~~l~vDan----------~~~~~~---~a~~~~~~l  205 (345)
T 2zad_A          145 KEAKKIFEEGFRVIKIKVGENLKED----IEAVEEIAKV-TR-GAKYIVDAN----------MGYTQK---EAVEFARAV  205 (345)
T ss_dssp             HHHHHHHHTTCSEEEEECCSCHHHH----HHHHHHHHHH-ST-TCEEEEECT----------TCSCHH---HHHHHHHHH
T ss_pred             HHHHHHHHcCcCEEEEeecCCHHHH----HHHHHHHHhh-CC-CCeEEEECC----------CCCCHH---HHHHHHHHH
Confidence            4577788899887654  4322333    7888888877 74 455678873          256422   356788889


Q ss_pred             HHcCCC--EEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEE
Q 021156          223 LASYAD--EFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTV  287 (316)
Q Consensus       223 ~~~Ga~--~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gViv  287 (316)
                      .+.++.  .+  -    +. ....|++.++++++.+++||.+.+.+.+.+++.++++.+ .++.+.+
T Consensus       206 ~~~~i~~~~i--E----~P-~~~~~~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~-~~d~v~i  264 (345)
T 2zad_A          206 YQKGIDIAVY--E----QP-VRREDIEGLKFVRFHSPFPVAADESARTKFDVMRLVKEE-AVDYVNI  264 (345)
T ss_dssp             HHTTCCCSEE--E----CC-SCTTCHHHHHHHHHHSSSCEEESTTCCSHHHHHHHHHHT-CCSEEEE
T ss_pred             HhcCCCeeee--e----CC-CCcccHHHHHHHHHhCCCCEEEeCCcCCHHHHHHHHHhC-CCCEEEE
Confidence            888877  53  1    11 223489999999988899999999999999999999988 3676666

>2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A*

Probab=95.74  E-value=0.12  Score=44.78  Aligned_cols=130  Identities=14%  Similarity=0.113  Sum_probs=77.9

Q ss_pred             HHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHH
Q 021156          145 DNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLA  224 (316)
Q Consensus       145 e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~  224 (316)
                      ..++.++++|||.+.+..+.-      .+.++.+.+. +  -+.+-.+..         ..++.+...-.....++...+
T Consensus        69 ~~v~~~~~~Gad~vtvh~~~g------~~~i~~~~~~-~--gv~vl~~t~---------~~~~~~~~~~~v~~~~~~a~~  130 (208)
T 2czd_A           69 LIARKVFGAGADYVIVHTFVG------RDSVMAVKEL-G--EIIMVVEMS---------HPGALEFINPLTDRFIEVANE  130 (208)
T ss_dssp             HHHHHHHHTTCSEEEEESTTC------HHHHHHHHTT-S--EEEEECCCC---------SGGGGTTTGGGHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCEEEEeccCC------HHHHHHHHHh-C--CcEEEEecC---------CcchhhHHHHHHHHHHHHHHH
Confidence            447888999999997765532      5557766543 2  222222211         012211001134556777888


Q ss_pred             cCCCEEEEeecCCccccCCCCHHHHHHHhhcCC-CcEEEEeCCCCH-HHHHHHHHhCCCcCEEEEccchhhccCcccHHH
Q 021156          225 SYADEFLVHGVDVEGKKLGIDDELVALLGKYSP-IPVTYAGGVTTM-ADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKD  302 (316)
Q Consensus       225 ~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~-iPVIasGGI~s~-eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~  302 (316)
                      .|++.+.+..-         ..+.++++++..+ .++++.|||+.. .++.++.+.|  ++.+++||++  +..+ ++.+
T Consensus       131 ~G~~G~~~~~~---------~~~~i~~lr~~~~~~~~iv~gGI~~~g~~~~~~~~aG--ad~vvvGr~I--~~a~-dp~~  196 (208)
T 2czd_A          131 IEPFGVIAPGT---------RPERIGYIRDRLKEGIKILAPGIGAQGGKAKDAVKAG--ADYIIVGRAI--YNAP-NPRE  196 (208)
T ss_dssp             HCCSEEECCCS---------STHHHHHHHHHSCTTCEEEECCCCSSTTHHHHHHHHT--CSEEEECHHH--HTSS-SHHH
T ss_pred             hCCcEEEECCC---------ChHHHHHHHHhCCCCeEEEECCCCCCCCCHHHHHHcC--CCEEEEChHH--hcCC-CHHH
Confidence            89887643211         2344556665544 367899999973 2788999998  8999999999  6532 3444


Q ss_pred             HHHH
Q 021156          303 VVAW  306 (316)
Q Consensus       303 ~~~~  306 (316)
                      ..+.
T Consensus       197 ~~~~  200 (208)
T 2czd_A          197 AAKA  200 (208)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A*

Probab=95.73  E-value=0.11  Score=45.82  Aligned_cols=127  Identities=19%  Similarity=0.145  Sum_probs=73.3

Q ss_pred             HHHHHHHHcCCCEE--EeCCeeecCCCC--CHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHH
Q 021156          145 DNSLSYIEEGATHV--IVTSYVFNNGQM--DLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVL  220 (316)
Q Consensus       145 e~~~~~l~~Gad~V--Vigt~~~~~~~~--~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~  220 (316)
                      .+++.+++.|||-|  +++-..++++..  -.+.+.++++..+ +..+.-|           .-.+...  .-.....++
T Consensus        75 ~e~~~Ai~~GAdevd~vinig~~~~g~~~~v~~ei~~v~~a~~-~~~lkvI-----------let~~l~--~e~i~~a~~  140 (220)
T 1ub3_A           75 LEAALACARGADEVDMVLHLGRAKAGDLDYLEAEVRAVREAVP-QAVLKVI-----------LETGYFS--PEEIARLAE  140 (220)
T ss_dssp             HHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHST-TSEEEEE-----------CCGGGSC--HHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEecccchhhhCCCHHHHHHHHHHHHHHHc-CCCceEE-----------EecCCCC--HHHHHHHHH
Confidence            57889999999975  333333322211  1244555555553 2221111           0011111  112445677


Q ss_pred             HHHHcCCCEEEEeecCCcccc-CCCCHHHHHHHhh--cCCCcEEEEeCCCCHHHHHHHHHhCCCcC--EEEEccch
Q 021156          221 DFLASYADEFLVHGVDVEGKK-LGIDDELVALLGK--YSPIPVTYAGGVTTMADLEKIKVAGIGRV--DVTVGSAL  291 (316)
Q Consensus       221 ~~~~~Ga~~ilvtdi~~dG~~-~G~d~eli~~l~~--~~~iPVIasGGI~s~eDi~~l~~~G~g~~--gVivG~Al  291 (316)
                      ...+.|++.+= |+   -|.. .|...+-++.+++  -.++||-++||+++.+|+.++.++|  ++  |+-.|..+
T Consensus       141 ia~eaGADfVK-Ts---TGf~~~gat~~dv~~m~~~vg~~v~VkaaGGirt~~~al~~i~aG--a~RiG~S~g~~I  210 (220)
T 1ub3_A          141 AAIRGGADFLK-TS---TGFGPRGASLEDVALLVRVAQGRAQVKAAGGIRDRETALRMLKAG--ASRLGTSSGVAL  210 (220)
T ss_dssp             HHHHHTCSEEE-CC---CSSSSCCCCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTT--CSEEEETTHHHH
T ss_pred             HHHHhCCCEEE-eC---CCCCCCCCCHHHHHHHHHhhCCCCeEEEECCCCCHHHHHHHHHCC--CcccchhHHHHH
Confidence            78889999652 32   2333 2334444444443  4579999999999999999999998  77  66666655

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=95.72  E-value=0.0091  Score=60.84  Aligned_cols=85  Identities=16%  Similarity=0.032  Sum_probs=64.9

Q ss_pred             CHHHHHHHHHHcCCCcceEEEe--cCC---------cccHHHHHHHHH-hCCCcEEEecCCC-HHHHHHHHHcC-CCEEE
Q 021156           94 SAAEFANLYKEDGLTGGHAIML--GAD---------PLSKAAAIEALH-AYPGGLQVGGGIN-SDNSLSYIEEG-ATHVI  159 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDL--da~---------~~~~~~i~~~v~-~~~~pl~vGGGIr-~e~~~~~l~~G-ad~VV  159 (316)
                      +..++++.++++|++.+|+--=  +..         ........+.++ .+++|++..|||+ .++++++++.| ||.|.
T Consensus       229 ~~~~~a~~l~~~g~d~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~iPvi~~Ggi~~~~~a~~~l~~g~aD~V~  308 (671)
T 1ps9_A          229 ETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHVSLPLVTTNRINDPQVADDILSRGDADMVS  308 (671)
T ss_dssp             HHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTTTTHHHHHHHTTSCSSCEEECSSCCSHHHHHHHHHTTSCSEEE
T ss_pred             HHHHHHHHHHhcCCCEEEcCCCccccccccccccCCcchHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCCEEE
Confidence            4567899999999998887420  110         012223444454 5789999999997 59999999998 99999


Q ss_pred             eCCeeecCCCCCHHHHHHHHHHh
Q 021156          160 VTSYVFNNGQMDLERLKDLVRVV  182 (316)
Q Consensus       160 igt~~~~~~~~~~eli~ei~~~~  182 (316)
                      +|..++.|    |+++.++.+..
T Consensus       309 ~gR~~l~~----P~l~~k~~~g~  327 (671)
T 1ps9_A          309 MARPFLAD----AELLSKAQSGR  327 (671)
T ss_dssp             ESTHHHHC----TTHHHHHHTTC
T ss_pred             eCHHHHhC----cHHHHHHHcCC
Confidence            99999998    99999988755

>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*

Probab=95.71  E-value=0.038  Score=50.71  Aligned_cols=72  Identities=14%  Similarity=0.133  Sum_probs=52.0

Q ss_pred             HHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhh-cCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhc
Q 021156          216 DERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGK-YSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIF  294 (316)
Q Consensus       216 ~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~-~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~  294 (316)
                      .+.++++.+.|++.+.++..+.+..     .+.++.+.+ ..++++.+|||| +++.+.++.+.|  ++.+.+|+..  |
T Consensus       204 ~eea~eal~aGaD~I~LDn~~~~~~-----~~~v~~l~~~~~~v~ieaSGGI-t~~~i~~~a~tG--VD~isvG~l~--~  273 (284)
T 1qpo_A          204 LEQLDAVLPEKPELILLDNFAVWQT-----QTAVQRRDSRAPTVMLESSGGL-SLQTAATYAETG--VDYLAVGALT--H  273 (284)
T ss_dssp             HHHHHHHGGGCCSEEEEETCCHHHH-----HHHHHHHHHHCTTCEEEEESSC-CTTTHHHHHHTT--CSEEECGGGT--S
T ss_pred             HHHHHHHHHcCCCEEEECCCCHHHH-----HHHHHHhhccCCCeEEEEECCC-CHHHHHHHHhcC--CCEEEECHHH--c
Confidence            3778888899999888777432210     123333433 236899999999 568999999998  9999999988  6


Q ss_pred             cCc
Q 021156          295 GGN  297 (316)
Q Consensus       295 ~g~  297 (316)
                      .-+
T Consensus       274 ~a~  276 (284)
T 1qpo_A          274 SVR  276 (284)
T ss_dssp             SBC
T ss_pred             CCC
Confidence            544

>3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7

Probab=95.69  E-value=0.052  Score=50.17  Aligned_cols=179  Identities=18%  Similarity=0.076  Sum_probs=107.2

Q ss_pred             CHHHHHHHHHHcCCCcceEEEec-C----C-c----ccHHHH----HHHHHhCCCcEEEec-----CC-CH-HHHHHHHH
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLG-A----D-P----LSKAAA----IEALHAYPGGLQVGG-----GI-NS-DNSLSYIE  152 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLd-a----~-~----~~~~~i----~~~v~~~~~pl~vGG-----GI-r~-e~~~~~l~  152 (316)
                      |+. .|+...++|++.+++-|.. +    + +    ....++    ..+.+.++.||++++     +. +. +.++.+.+
T Consensus        31 D~~-sA~l~e~aGf~ai~vs~~s~a~~~~G~pD~~~vt~~em~~~~~~I~r~~~~PviaD~d~Gyg~~~~v~~~v~~l~~  109 (298)
T 3eoo_A           31 TAY-AAKMAEAVGFKAVYLSGGGVAANSLGIPDLGISTMDDVLVDANRITNATNLPLLVDIDTGWGGAFNIARTIRSFIK  109 (298)
T ss_dssp             SHH-HHHHHHHHTCSCEEECHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHCCSCEEEECTTCSSSHHHHHHHHHHHHH
T ss_pred             CHH-HHHHHHHcCCCEEEECcHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhhcCCeEEEECCCCCCCHHHHHHHHHHHHH
Confidence            676 7788888999988887733 1    1 1    123333    333345789998853     22 22 56888899


Q ss_pred             cCCCEEEe-CCeeecC-----C-CC-CH-HHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHH
Q 021156          153 EGATHVIV-TSYVFNN-----G-QM-DL-ERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFL  223 (316)
Q Consensus       153 ~Gad~VVi-gt~~~~~-----~-~~-~~-eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~  223 (316)
                      +||.-|-| |....+.     + ++ +. +.+.++....- .+-  ..|+.+     .-++.......--+.++.++.+.
T Consensus       110 aGaagv~iEDq~~~k~cGh~~gk~l~~~~e~~~ri~Aa~~-A~~--~~~~~I-----~ARTDa~~~~gldeai~Ra~ay~  181 (298)
T 3eoo_A          110 AGVGAVHLEDQVGQKRCGHRPGKECVPAGEMVDRIKAAVD-ART--DETFVI-----MARTDAAAAEGIDAAIERAIAYV  181 (298)
T ss_dssp             TTCSEEEEECBCCCCCTTCCCCCCBCCHHHHHHHHHHHHH-HCS--STTSEE-----EEEECTHHHHHHHHHHHHHHHHH
T ss_pred             hCCeEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHH-hcc--CCCeEE-----EEeehhhhhcCHHHHHHHHHhhH
Confidence            99999877 3322111     1 11 22 45555543320 000  111110     11222221111114678899999


Q ss_pred             HcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEE---eCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          224 ASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYA---GGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       224 ~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIas---GGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      +.|++.+.++.+        .+.+.++++++.+++|+.++   +|-...-...+|.++|  +.-|+.|.++
T Consensus       182 ~AGAD~if~~~~--------~~~ee~~~~~~~~~~Pl~~n~~~~g~tp~~~~~eL~~lG--v~~v~~~~~~  242 (298)
T 3eoo_A          182 EAGADMIFPEAM--------KTLDDYRRFKEAVKVPILANLTEFGSTPLFTLDELKGAN--VDIALYCCGA  242 (298)
T ss_dssp             HTTCSEEEECCC--------CSHHHHHHHHHHHCSCBEEECCTTSSSCCCCHHHHHHTT--CCEEEECSHH
T ss_pred             hcCCCEEEeCCC--------CCHHHHHHHHHHcCCCeEEEeccCCCCCCCCHHHHHHcC--CeEEEEchHH
Confidence            999999987765        26788999988888998775   4433223577888888  8999999877

>2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B*

Probab=95.65  E-value=0.06  Score=50.01  Aligned_cols=147  Identities=16%  Similarity=0.091  Sum_probs=89.2

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCC--cc-----cHHH---HHHHHH-hCCCcEEE-ecCCC---HHHHHHHHHcCCC-
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGAD--PL-----SKAA---AIEALH-AYPGGLQV-GGGIN---SDNSLSYIEEGAT-  156 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~--~~-----~~~~---i~~~v~-~~~~pl~v-GGGIr---~e~~~~~l~~Gad-  156 (316)
                      +++.+.|+.+.+.|++   ++|+.+.  .+     ..++   +++.++ .+++||.+ +-|-.   .+-+++.+++|++ 
T Consensus        74 ~~~~~~A~~~v~~GAd---iIDIg~~StrP~~~~vs~eee~~vV~~v~~~~~vplsI~DT~~~~~~~~V~eaal~aga~~  150 (310)
T 2h9a_B           74 NDPVAWAKKCVEYGAD---IVALRLVSAHPDGQNRSGAELAEVCKAVADAIDVPLMIIGCGVEEKDAEIFPVIGEALSGR  150 (310)
T ss_dssp             TCHHHHHHHHHHTTCS---EEEEECGGGCTTTTCCCHHHHHHHHHHHHHHCSSCEEEECCSCHHHHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHHHHcCCc---EEEEeCccCCCCCCCCCHHHHHHHHHHHHHhCCceEEEECCCCCCCCHHHHHHHHHhCCCC
Confidence            4789999999988876   9999863  11     1122   333343 57899999 66663   4779999999997 


Q ss_pred             EEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCC--CEEEEee
Q 021156          157 HVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYA--DEFLVHG  234 (316)
Q Consensus       157 ~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga--~~ilvtd  234 (316)
                      +.+|++..-.+    .+.+.+++.+||. .+++.- .+  +             . ..+.+....+.+.|+  +.|++-.
T Consensus       151 k~iINdvs~~~----~~~~~~~aa~~g~-~vv~m~-~~--d-------------v-~~l~~~~~~a~~~Gi~~e~IilDP  208 (310)
T 2h9a_B          151 NCLLSSATKDN----YKPIVATCMVHGH-SVVASA-PL--D-------------I-NLSKQLNIMIMEMNLAPNRIIMDP  208 (310)
T ss_dssp             CCEEEEECTTT----HHHHHHHHHHHTC-EEEEEC-SS--C-------------H-HHHHHHHHHHHTTTCCGGGEEEEC
T ss_pred             CCEEEECCCCc----cHHHHHHHHHhCC-CEEEEC-hh--H-------------H-HHHHHHHHHHHHCCCChhhEEEeC
Confidence            77777766544    4455567788873 332221 10  0             0 125567788889998  4565432


Q ss_pred             cCC-ccccCCC---CHHHHHH--Hhh--cCCCcEEEEe
Q 021156          235 VDV-EGKKLGI---DDELVAL--LGK--YSPIPVTYAG  264 (316)
Q Consensus       235 i~~-dG~~~G~---d~eli~~--l~~--~~~iPVIasG  264 (316)
                      ... -|+....   +++++++  +.+  ..+.|++++=
T Consensus       209 g~g~~g~~~e~~~~~l~~ir~~al~~~~~lg~P~l~g~  246 (310)
T 2h9a_B          209 LIGALGYGIEYSYSIIERMRLGALTGDKILAMPVVCFI  246 (310)
T ss_dssp             CCCCTTTTHHHHHHHHHHHHHHHHTTCGGGCSCBEECH
T ss_pred             CCccccCchHhHHHHHHHHHHhhhhhhhcCCCCEEEEc
Confidence            221 1211112   4677777  332  3578888753

>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2

Probab=95.63  E-value=0.012  Score=51.02  Aligned_cols=47  Identities=26%  Similarity=0.485  Sum_probs=37.2

Q ss_pred             CCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCH-HHHHHHHHH
Q 021156          133 PGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDL-ERLKDLVRV  181 (316)
Q Consensus       133 ~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~-eli~ei~~~  181 (316)
                      +.|++++|||+.+++.++.++||+.+++||..++..  || +.++++.+.
T Consensus       170 ~~~i~v~GGI~~~~~~~~~~~Gad~vvvGsai~~~~--d~~~a~~~~~~~  217 (220)
T 2fli_A          170 SFDIEVDGGVDNKTIRACYEAGANVFVAGSYLFKAS--DLVSQVQTLRTA  217 (220)
T ss_dssp             CCEEEEESSCCTTTHHHHHHHTCCEEEESHHHHTSS--CHHHHHHHHHHH
T ss_pred             CceEEEECcCCHHHHHHHHHcCCCEEEEChHHhCCC--CHHHHHHHHHHH
Confidence            689999999999899999999999999999988741  23 345555443

>3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A*

Probab=95.63  E-value=0.054  Score=49.06  Aligned_cols=127  Identities=17%  Similarity=0.192  Sum_probs=72.8

Q ss_pred             HHHHHHHHcCCCE--EEeCCeeecCCCC--CHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHH
Q 021156          145 DNSLSYIEEGATH--VIVTSYVFNNGQM--DLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVL  220 (316)
Q Consensus       145 e~~~~~l~~Gad~--VVigt~~~~~~~~--~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~  220 (316)
                      .+++.+++.|||-  +|++-..+.+|..  -.+.+.++++..+ ..+     +|      .+.-.+..  ++-.....++
T Consensus       115 ~Ea~~Ai~~GAdEIDmViNig~lk~g~~~~v~~eI~~v~~a~~-~~~-----lK------VIlEt~~L--t~eei~~A~~  180 (260)
T 3r12_A          115 HEAIFAVESGADEIDMVINVGMLKAKEWEYVYEDIRSVVESVK-GKV-----VK------VIIETCYL--DTEEKIAACV  180 (260)
T ss_dssp             HHHHHHHHHTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTT-TSE-----EE------EECCGGGC--CHHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEEEeehhhhccccHHHHHHHHHHHHHhcC-CCc-----EE------EEEeCCCC--CHHHHHHHHH
Confidence            4688899999996  4555444433321  1234455555543 221     11      11111211  1112445567


Q ss_pred             HHHHcCCCEEEEeecCCcccc-CCCCHHHHHHHhhc--CCCcEEEEeCCCCHHHHHHHHHhCCCcC--EEEEccch
Q 021156          221 DFLASYADEFLVHGVDVEGKK-LGIDDELVALLGKY--SPIPVTYAGGVTTMADLEKIKVAGIGRV--DVTVGSAL  291 (316)
Q Consensus       221 ~~~~~Ga~~ilvtdi~~dG~~-~G~d~eli~~l~~~--~~iPVIasGGI~s~eDi~~l~~~G~g~~--gVivG~Al  291 (316)
                      ...+.|++.+= |+   .|.. .|...+-++.+++.  .+++|-++|||++.+|+.+++++|  ++  |.-.|.++
T Consensus       181 ia~eaGADfVK-TS---TGf~~~GAT~edV~lm~~~vg~~v~VKaAGGIrt~~~al~mi~aG--A~RiGtS~g~~I  250 (260)
T 3r12_A          181 ISKLAGAHFVK-TS---TGFGTGGATAEDVHLMKWIVGDEMGVKASGGIRTFEDAVKMIMYG--ADRIGTSSGVKI  250 (260)
T ss_dssp             HHHHTTCSEEE-CC---CSSSSCCCCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTT--CSEEEESCHHHH
T ss_pred             HHHHhCcCEEE-cC---CCCCCCCCCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcC--CceeecchHHHH
Confidence            77789999653 43   3433 23344444444433  479999999999999999999999  66  44444444

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=95.62  E-value=0.018  Score=56.78  Aligned_cols=71  Identities=20%  Similarity=0.105  Sum_probs=51.3

Q ss_pred             HHHHHHHHcCCCcceEEEecCC-----------cccHHHHHHHHH---hCCCcEEEecCCC-HHHHHHHHHcCCCEEEeC
Q 021156           97 EFANLYKEDGLTGGHAIMLGAD-----------PLSKAAAIEALH---AYPGGLQVGGGIN-SDNSLSYIEEGATHVIVT  161 (316)
Q Consensus        97 e~a~~~~~~G~~~l~lvDLda~-----------~~~~~~i~~~v~---~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVig  161 (316)
                      +.|+.+.++|++.+.+-.=.+.           .+....+.++.+   ..++|++..|||+ .+|+.+++.+||+.|.+|
T Consensus       282 e~a~~l~~aGaD~I~vg~g~Gs~~~t~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~GAd~V~vG  361 (490)
T 4avf_A          282 EAAKALAEAGADAVKVGIGPGSICTTRIVAGVGVPQISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVMMG  361 (490)
T ss_dssp             HHHHHHHHTTCSEEEECSSCSTTCHHHHHTCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHHTCSEEEEC
T ss_pred             HHHHHHHHcCCCEEEECCCCCcCCCccccCCCCccHHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHcCCCeeeec
Confidence            5788888899997765110011           122333444443   4579999999998 699999999999999999


Q ss_pred             CeeecC
Q 021156          162 SYVFNN  167 (316)
Q Consensus       162 t~~~~~  167 (316)
                      +.+...
T Consensus       362 s~~~~~  367 (490)
T 4avf_A          362 SMFAGT  367 (490)
T ss_dssp             TTTTTB
T ss_pred             HHHhcC
Confidence            998765

>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}

Probab=95.58  E-value=0.017  Score=54.88  Aligned_cols=71  Identities=18%  Similarity=0.171  Sum_probs=50.7

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCc------------ccHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEe
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADP------------LSKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIV  160 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~------------~~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVi  160 (316)
                      +|. .|+.+.++|++.+.+ -..++.            +....+.++.+... |++..|||+ .+|+.+++.+||+.|.+
T Consensus       151 T~e-~A~~a~~aGaD~I~V-g~g~G~~~~tr~~~g~g~p~l~aI~~~~~~~~-PVIAdGGI~~~~di~kALa~GAd~V~i  227 (361)
T 3r2g_A          151 TYA-GADYLASCGADIIKA-GIGGGSVCSTRIKTGFGVPMLTCIQDCSRADR-SIVADGGIKTSGDIVKALAFGADFVMI  227 (361)
T ss_dssp             SHH-HHHHHHHTTCSEEEE-CCSSSSCHHHHHHHCCCCCHHHHHHHHTTSSS-EEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred             CHH-HHHHHHHcCCCEEEE-cCCCCcCccccccCCccHHHHHHHHHHHHhCC-CEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence            564 688888999998876 233211            11222333322233 999999998 69999999999999999


Q ss_pred             CCeeecC
Q 021156          161 TSYVFNN  167 (316)
Q Consensus       161 gt~~~~~  167 (316)
                      |+.+...
T Consensus       228 Gr~f~~t  234 (361)
T 3r2g_A          228 GGMLAGS  234 (361)
T ss_dssp             SGGGTTB
T ss_pred             ChHHhCC
Confidence            9998875

>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*

Probab=95.54  E-value=0.006  Score=53.47  Aligned_cols=35  Identities=14%  Similarity=0.140  Sum_probs=32.6

Q ss_pred             CCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeec
Q 021156          132 YPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus       132 ~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      .++|++++|||+.+++..++++|||.+|+||+.++
T Consensus       165 ~~~pi~v~GGI~~~~~~~~~~aGAd~vvvGsaI~~  199 (218)
T 3jr2_A          165 LGIELSITGGIVPEDIYLFEGIKTKTFIAGRALAG  199 (218)
T ss_dssp             TTCEEEEESSCCGGGGGGGTTSCEEEEEESGGGSH
T ss_pred             CCCCEEEECCCCHHHHHHHHHcCCCEEEEchhhcC
Confidence            57999999999989999999999999999999886

>3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa}

Probab=95.53  E-value=0.062  Score=49.36  Aligned_cols=178  Identities=13%  Similarity=0.072  Sum_probs=108.7

Q ss_pred             CHHHHHHHHHHcCCCcceEEEec-C----C-----cccHHHHHH----HHHhCCCcEEEec-----CCC-H-HHHHHHHH
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLG-A----D-----PLSKAAAIE----ALHAYPGGLQVGG-----GIN-S-DNSLSYIE  152 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLd-a----~-----~~~~~~i~~----~v~~~~~pl~vGG-----GIr-~-e~~~~~l~  152 (316)
                      |+. .|+...++|++.+++=|.. +    +     .....++..    +.+.++.|++++.     +.. . +.++++.+
T Consensus        30 D~~-sA~i~e~aGf~ai~vs~s~~a~~~lG~pD~~~vt~~em~~~~~~I~r~~~~PviaD~d~Gyg~~~~~~~~v~~l~~  108 (287)
T 3b8i_A           30 DPM-SARIAADLGFECGILGGSVASLQVLAAPDFALITLSEFVEQATRIGRVARLPVIADADHGYGNALNVMRTVVELER  108 (287)
T ss_dssp             SHH-HHHHHHHTTCSCEEECHHHHHHHHHSCCSSSCSCHHHHHHHHHHHHTTCSSCEEEECTTCSSSHHHHHHHHHHHHH
T ss_pred             CHH-HHHHHHHcCCCEEEeCcHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCHHHHHHHHHHHHH
Confidence            676 7888888999988887762 1    1     123334433    3345778998853     221 2 56888999


Q ss_pred             cCCCEEEe-CCeeec-----CCCC-CH-HHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHH
Q 021156          153 EGATHVIV-TSYVFN-----NGQM-DL-ERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLA  224 (316)
Q Consensus       153 ~Gad~VVi-gt~~~~-----~~~~-~~-eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~  224 (316)
                      +||.-|-| |....+     .+++ +. +.++++....- .++  .-|++.     .-++..... .-.+.++.++.+.+
T Consensus       109 aGa~gv~iED~~~pKrcgh~~gkl~~~~e~~~~I~aa~~-a~~--~~~~~i-----~aRtdaa~~-gl~~ai~Ra~ay~e  179 (287)
T 3b8i_A          109 AGIAALTIEDTLLPAQFGRKSTDLICVEEGVGKIRAALE-ARV--DPALTI-----IARTNAELI-DVDAVIQRTLAYQE  179 (287)
T ss_dssp             HTCSEEEEECBCCSCCTTTCTTCBCCHHHHHHHHHHHHH-HCC--STTSEE-----EEEEETTTS-CHHHHHHHHHHHHH
T ss_pred             hCCeEEEEcCCCCccccCCCCCCccCHHHHHHHHHHHHH-cCC--CCCcEE-----EEechhhhc-CHHHHHHHHHHHHH
Confidence            99999887 332111     0111 12 34444443331 111  112221     112222110 00147889999999


Q ss_pred             cCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEE-EeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          225 SYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTY-AGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       225 ~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIa-sGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      .|++.+++..+        ++.+.++++.+.+++|++. .||-...-+..+|.++|  +.-|+.|.++
T Consensus       180 AGAd~i~~e~~--------~~~~~~~~i~~~~~~P~ii~~~g~~~~~~~~eL~~lG--v~~v~~~~~~  237 (287)
T 3b8i_A          180 AGADGICLVGV--------RDFAHLEAIAEHLHIPLMLVTYGNPQLRDDARLARLG--VRVVVNGHAA  237 (287)
T ss_dssp             TTCSEEEEECC--------CSHHHHHHHHTTCCSCEEEECTTCGGGCCHHHHHHTT--EEEEECCCHH
T ss_pred             cCCCEEEecCC--------CCHHHHHHHHHhCCCCEEEeCCCCCCCCCHHHHHHcC--CcEEEEChHH
Confidence            99999987765        4578899999988999884 34444344578888898  8889998877

>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}

Probab=95.52  E-value=0.025  Score=54.43  Aligned_cols=70  Identities=20%  Similarity=0.197  Sum_probs=51.8

Q ss_pred             HHHHHHHHcCCCcceEEEec-----------CC-cccHHHHHHHH---HhCCCcEEEecCCC-HHHHHHHHHcCCCEEEe
Q 021156           97 EFANLYKEDGLTGGHAIMLG-----------AD-PLSKAAAIEAL---HAYPGGLQVGGGIN-SDNSLSYIEEGATHVIV  160 (316)
Q Consensus        97 e~a~~~~~~G~~~l~lvDLd-----------a~-~~~~~~i~~~v---~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVi  160 (316)
                      +.|+.+.++|++.+.+ -..           +. .+....+.++.   +..++|++..|||+ .+|+.+++.+||+.|.+
T Consensus       196 e~A~~a~~aGAD~I~v-G~g~Gs~~~tr~~~g~g~p~~~al~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGAd~V~v  274 (400)
T 3ffs_A          196 EATKELIENGADGIKV-GIGPGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMI  274 (400)
T ss_dssp             HHHHHHHHTTCSEEEE-CC---------CCSCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSEEEE
T ss_pred             HHHHHHHHcCCCEEEE-eCCCCcCcccccccccchhHHHHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCCCEEEE
Confidence            5788888999998876 111           00 12233333333   23689999999998 59999999999999999


Q ss_pred             CCeeecC
Q 021156          161 TSYVFNN  167 (316)
Q Consensus       161 gt~~~~~  167 (316)
                      ||.+...
T Consensus       275 Gt~f~~t  281 (400)
T 3ffs_A          275 GSILAGT  281 (400)
T ss_dssp             CGGGTTB
T ss_pred             ChHHhcC
Confidence            9998875

>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2

Probab=95.51  E-value=0.009  Score=52.51  Aligned_cols=35  Identities=31%  Similarity=0.512  Sum_probs=32.4

Q ss_pred             CCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecC
Q 021156          133 PGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNN  167 (316)
Q Consensus       133 ~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~  167 (316)
                      ++|+.++|||+.+++..++++||+.|++||..++.
T Consensus       179 ~~pi~v~GGI~~~n~~~~~~aGad~vvvgSaI~~a  213 (230)
T 1rpx_A          179 NPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA  213 (230)
T ss_dssp             CCEEEEESSCCTTTHHHHHHHTCCEEEESHHHHTS
T ss_pred             CceEEEECCCCHHHHHHHHHcCCCEEEEChhhhCC
Confidence            68999999999989989999999999999998864

>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A

Probab=95.47  E-value=0.016  Score=55.13  Aligned_cols=72  Identities=26%  Similarity=0.270  Sum_probs=51.9

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCC------------cccHHHHHHHH---HhCCCcEEEecCCC-HHHHHHHHHcCCCE
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGAD------------PLSKAAAIEAL---HAYPGGLQVGGGIN-SDNSLSYIEEGATH  157 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~------------~~~~~~i~~~v---~~~~~pl~vGGGIr-~e~~~~~l~~Gad~  157 (316)
                      ++ +.|+.+.++|++.+.+ -...+            .+....+.++.   +..++|++..|||+ .+++.+++.+||+.
T Consensus       159 t~-e~A~~a~~aGAD~I~v-G~gpGs~~~tr~~~g~g~p~~~~l~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~  236 (366)
T 4fo4_A          159 TA-EGARALIEAGVSAVKV-GIGPGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASC  236 (366)
T ss_dssp             SH-HHHHHHHHHTCSEEEE-CSSCSTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSE
T ss_pred             CH-HHHHHHHHcCCCEEEE-ecCCCCCCCcccccCcccchHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCE
Confidence            45 4778888899997776 11111            01222333333   34689999999998 59999999999999


Q ss_pred             EEeCCeeecC
Q 021156          158 VIVTSYVFNN  167 (316)
Q Consensus       158 VVigt~~~~~  167 (316)
                      |.+||.+...
T Consensus       237 V~vGs~f~~t  246 (366)
T 4fo4_A          237 VMVGSMFAGT  246 (366)
T ss_dssp             EEESTTTTTB
T ss_pred             EEEChHhhcC
Confidence            9999998875

>3fv9_G Mandelate racemase/muconate lactonizing enzyme; structural genomics, mandelate racemase/muconatelactonizing hydrolase, PSI-2; 1.90A {Roseovarius nubinhibens ism} PDB: 2pce_A

Probab=95.44  E-value=0.064  Score=51.10  Aligned_cols=146  Identities=10%  Similarity=-0.130  Sum_probs=95.8

Q ss_pred             CcEEEecCCC-H----HHHHHHHHcCCCEE--EeCC-----eeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeE
Q 021156          134 GGLQVGGGIN-S----DNSLSYIEEGATHV--IVTS-----YVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYA  201 (316)
Q Consensus       134 ~pl~vGGGIr-~----e~~~~~l~~Gad~V--Vigt-----~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~  201 (316)
                      +|+-.-.|+. .    ++++++.+.|...+  =+|.     ....+    .+.++.+.+.+|+ .+-+.+|+.   +   
T Consensus       135 v~~y~s~~~~~~e~~~~~a~~~~~~G~~~~K~Kvg~~~~~~~~~~d----~~~v~avR~a~G~-~~~L~vDaN---~---  203 (386)
T 3fv9_G          135 VPVISSIGGDTPEAMRAKVARHRAQGFKGHSIKIGASEAEGGPALD----AERITACLADRQP-GEWYLADAN---N---  203 (386)
T ss_dssp             BCEEEEECSCCHHHHHHHHHHHHHTTCCEEEEECCCCTTTTHHHHH----HHHHHHHTTTCCT-TCEEEEECT---T---
T ss_pred             eeeeEecCCCCHHHHHHHHHHHHHCCCCEEEEeccCCCCCCCHHHH----HHHHHHHHHHcCC-CCeEEEECC---C---
Confidence            5666555553 3    34677788898754  4452     22333    7788888888874 466888873   2   


Q ss_pred             EEeCCcceecccCHHHHHHHH-HHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCC
Q 021156          202 IVTDRWQKFSDVYLDERVLDF-LASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGI  280 (316)
Q Consensus       202 v~~~gw~~~~~~~~~e~a~~~-~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~  280 (316)
                          +|...   +..++++.+ .+.++ .+  =    + =.  +|++.++++++.+++||.+..-+.+..|+.++++.+ 
T Consensus       204 ----~~~~~---~A~~~~~~l~~~~~i-~i--E----e-P~--~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~~~~~-  265 (386)
T 3fv9_G          204 ----GLTVE---HALRMLSLLPPGLDI-VL--E----A-PC--ASWAETKSLRARCALPLLLDELIQTETDLIAAIRDD-  265 (386)
T ss_dssp             ----CCCHH---HHHHHHHHSCSSCCC-EE--E----C-CC--SSHHHHHHHHTTCCSCEEESTTCCSHHHHHHHHHTT-
T ss_pred             ----CCCHH---HHHHHHHHhhccCCc-EE--e----c-CC--CCHHHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHhC-
Confidence                45421   244555555 44343 21  1    1 11  189999999998999999999999999999999987 


Q ss_pred             CcCEEEEccchhhccCcccHHHHHHHHHhh
Q 021156          281 GRVDVTVGSALDIFGGNLAYKDVVAWHAQQ  310 (316)
Q Consensus       281 g~~gVivG~Al~~~~g~~~~~~~~~~~~~~  310 (316)
                      .++.+.+--+.  .+|-....++.++++++
T Consensus       266 a~d~v~~k~~~--~GGit~~~~i~~~A~~~  293 (386)
T 3fv9_G          266 LCDGVGLKVSK--QGGITPMLRQRAIAAAA  293 (386)
T ss_dssp             CCSEEEEEHHH--HTSHHHHHHHHHHHHHT
T ss_pred             CCCEEEECccc--cCCHHHHHHHHHHHHHc
Confidence            47777777666  66654555555555554

>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*

Probab=95.42  E-value=0.023  Score=49.56  Aligned_cols=86  Identities=16%  Similarity=0.070  Sum_probs=54.8

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCC--c-----ccHHHHHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeec
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGAD--P-----LSKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~--~-----~~~~~i~~~v~~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      ++.+ ++...+.|++.+-+=-.-.+  .     .....+.+..+..++|+++.|||+.+++.+++++||+.|++||.++.
T Consensus       119 t~~~-~~~a~~~gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~~~~pvia~GGI~~~nv~~~~~~Ga~gv~vgs~i~~  197 (221)
T 1yad_A          119 SLEE-AVQAEKEDADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRISIPVIAIGGMTPDRLRDVKQAGADGIAVMSGIFS  197 (221)
T ss_dssp             SHHH-HHHHHHTTCSEEEEECCC----------CHHHHHHHHHHHCCSCEEEESSCCGGGHHHHHHTTCSEEEESHHHHT
T ss_pred             CHHH-HHHHHhCCCCEEEECCccccCCCCCCCCCCHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcCCCEEEEhHHhhC
Confidence            5765 45556778886544111011  1     12233334334578999999999889999999999999999999986


Q ss_pred             CCCCCHHHHHHHHHH
Q 021156          167 NGQMDLERLKDLVRV  181 (316)
Q Consensus       167 ~~~~~~eli~ei~~~  181 (316)
                      .+. ..+.++++.+.
T Consensus       198 ~~d-~~~~~~~~~~~  211 (221)
T 1yad_A          198 SAE-PLEAARRYSRK  211 (221)
T ss_dssp             SSS-HHHHHHHHHHH
T ss_pred             CCC-HHHHHHHHHHH
Confidence            421 03444444443

>4e4f_A Mannonate dehydratase; magnesium binding, enzyme function initiative, isomerase; 2.00A {Pectobacterium carotovorum subsp}

Probab=95.38  E-value=0.051  Score=52.55  Aligned_cols=115  Identities=7%  Similarity=-0.045  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHH
Q 021156          172 LERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVAL  251 (316)
Q Consensus       172 ~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~  251 (316)
                      .+.++.+.+.+|+ .+-+.+|+.          .+|...   +..++++.+.+.|+..+  -.     -....|++.+++
T Consensus       215 ~e~v~avR~a~G~-d~~L~vDaN----------~~~~~~---~A~~~~~~L~~~~i~~i--Ee-----P~~~~d~~~~~~  273 (426)
T 4e4f_A          215 PKLFEAVRDKFGF-NEHLLHDMH----------HRLTPI---EAARFGKSVEDYRLFWM--ED-----PTPAENQACFRL  273 (426)
T ss_dssp             HHHHHHHHHHHTT-SSEEEEECT----------TCSCHH---HHHHHHHHTGGGCCSEE--EC-----CSCCSSGGGGHH
T ss_pred             HHHHHHHHHHhCC-CCEEEEECC----------CCCCHH---HHHHHHHHHhhcCCCEE--EC-----CCChHHHHHHHH
Confidence            3678889899985 456778873          356432   45677888888887754  11     122237888899


Q ss_pred             HhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHHhh
Q 021156          252 LGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQQ  310 (316)
Q Consensus       252 l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~~~  310 (316)
                      +++.+++||.+.+.+.+.+++.++++.+ .++.+.+--+-  .+|-....++.++++++
T Consensus       274 l~~~~~iPIa~dE~~~~~~~~~~~i~~g-a~d~v~~k~~~--~GGit~~~~ia~~A~~~  329 (426)
T 4e4f_A          274 IRQHTVTPIAVGEVFNSIWDCKQLIEEQ-LIDYIRTTITH--AGGITGMRRIADFASLY  329 (426)
T ss_dssp             HHTTCCSCEEECTTCCSGGGTHHHHHTT-CCSEECCCTTT--TTHHHHHHHHHHHHHTT
T ss_pred             HHhcCCCCEEeCCCcCCHHHHHHHHHcC-CCCEEEeCccc--cCCHHHHHHHHHHHHHc
Confidence            9999999999999999999999999988 36666665555  55544455555555554

>4dye_A Isomerase; enolase family protein, EFI, enzym function initiative; 1.60A {Streptomyces coelicolor} PDB: 2oqh_A

Probab=95.32  E-value=0.083  Score=50.62  Aligned_cols=135  Identities=13%  Similarity=0.077  Sum_probs=94.9

Q ss_pred             HHHHHHHHc-CCCE--EEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHH
Q 021156          145 DNSLSYIEE-GATH--VIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLD  221 (316)
Q Consensus       145 e~~~~~l~~-Gad~--VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~  221 (316)
                      ++++++.+. |...  +=+|.....+    .+.++.+.+.+ + .+-+.+|+.          .+|...   +..++++.
T Consensus       174 ~~a~~~~~~~G~~~~K~KvG~~~~~d----~~~v~avR~~~-~-~~~l~vDaN----------~~w~~~---~A~~~~~~  234 (398)
T 4dye_A          174 EHAVRVVEEGGFDAVKLKGTTDCAGD----VAILRAVREAL-P-GVNLRVDPN----------AAWSVP---DSVRAGIA  234 (398)
T ss_dssp             HHHHHHHHHHCCSEEEEECCSCHHHH----HHHHHHHHHHC-T-TSEEEEECT----------TCSCHH---HHHHHHHH
T ss_pred             HHHHHHHHhcCCCEEEEecCCCHHHH----HHHHHHHHHhC-C-CCeEEeeCC----------CCCCHH---HHHHHHHH
Confidence            346777888 9875  4456333333    78888888888 3 456778873          356532   35677888


Q ss_pred             HHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHH
Q 021156          222 FLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYK  301 (316)
Q Consensus       222 ~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~  301 (316)
                      +.+.++..+  -    + =..  |++.++++++.+++||.+..-+.+..++.++++.+ .++.+.+--+-  .+|-....
T Consensus       235 l~~~~i~~i--E----q-P~~--d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~-a~d~v~~k~~~--~GGit~~~  302 (398)
T 4dye_A          235 LEELDLEYL--E----D-PCV--GIEGMAQVKAKVRIPLCTNMCVVRFEDFAPAMRLN-AVDVIHGDVYK--WGGIAATK  302 (398)
T ss_dssp             HGGGCCSEE--E----C-CSS--HHHHHHHHHHHCCSCEEESSSCCSGGGHHHHHHTT-CCSEEEECHHH--HTSHHHHH
T ss_pred             HhhcCCCEE--c----C-CCC--CHHHHHHHHhhCCCCEEeCCcCCCHHHHHHHHHhC-CCCEEEeCccc--cCCHHHHH
Confidence            888887754  1    1 111  88899999998999999999999999999999988 47777777666  66655555


Q ss_pred             HHHHHHHhh
Q 021156          302 DVVAWHAQQ  310 (316)
Q Consensus       302 ~~~~~~~~~  310 (316)
                      ++.++++++
T Consensus       303 ~ia~~A~~~  311 (398)
T 4dye_A          303 ALAAHCETF  311 (398)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHc
Confidence            566565554

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=95.30  E-value=0.022  Score=56.37  Aligned_cols=70  Identities=17%  Similarity=0.212  Sum_probs=51.7

Q ss_pred             HHHHHHHHcCCCcceEEEecCC-----------c----ccHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEe
Q 021156           97 EFANLYKEDGLTGGHAIMLGAD-----------P----LSKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIV  160 (316)
Q Consensus        97 e~a~~~~~~G~~~l~lvDLda~-----------~----~~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVi  160 (316)
                      +.|+.+.++|++.+.+ -..++           .    .....+.+..+.+++|++..|||+ .+|+.+++.+||+.|.+
T Consensus       308 ~~a~~l~~aGad~I~v-g~~~G~~~~t~~~~~~g~~~~~~~~~~~~~~~~~~ipVia~GGI~~~~di~kala~GAd~V~i  386 (514)
T 1jcn_A          308 AQAKNLIDAGVDGLRV-GMGCGSICITQEVMACGRPQGTAVYKVAEYARRFGVPIIADGGIQTVGHVVKALALGASTVMM  386 (514)
T ss_dssp             HHHHHHHHHTCSEEEE-CSSCSCCBTTBCCCSCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred             HHHHHHHHcCCCEEEE-CCCCCcccccccccCCCccchhHHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHcCCCeeeE
Confidence            5788888899987766 22111           0    012223333445789999999998 59999999999999999


Q ss_pred             CCeeecC
Q 021156          161 TSYVFNN  167 (316)
Q Consensus       161 gt~~~~~  167 (316)
                      |+.+..+
T Consensus       387 G~~~l~~  393 (514)
T 1jcn_A          387 GSLLAAT  393 (514)
T ss_dssp             STTTTTS
T ss_pred             CHHHHcC
Confidence            9999876

>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2

Probab=95.30  E-value=0.37  Score=44.16  Aligned_cols=156  Identities=15%  Similarity=0.107  Sum_probs=96.7

Q ss_pred             CCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCe-eEEEeCCccee
Q 021156          132 YPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGK-YAIVTDRWQKF  210 (316)
Q Consensus       132 ~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~-~~v~~~gw~~~  210 (316)
                      +++-+-.+=|-..+.+++.+++|.+.|.++...+.- +=|.+..+++++...+-.+.+-.-+=..+|. .-+.... .+.
T Consensus        75 VPValHlDHg~~~e~i~~ai~~GFtSVMiDgS~lp~-eeNi~~Tk~vv~~ah~~gvsVEaElG~vgg~ed~~~~~~-~~~  152 (286)
T 1gvf_A           75 MPLALHLDHHESLDDIRRKVHAGVRSAMIDGSHFPF-AENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDA-ESA  152 (286)
T ss_dssp             SCBEEEEEEECCHHHHHHHHHTTCCEEEECCTTSCH-HHHHHHHHHHHHHHHHTTCEEEEEESCCC------------CC
T ss_pred             CcEEEEcCCCCCHHHHHHHHHcCCCeEEECCCCCCH-HHHHHHHHHHHHHHHHcCCEEEEEEeeccCcccCccccc-ccc
Confidence            344456677767899999999999999997655421 0025566666554321112232222100121 0010000 000


Q ss_pred             cccCHHHHHHHHHHcCCCEEEEeecCCccccCC---CCHHHHHHHhhcCCCcEEEEeCCCCH-HHHHHHHHhCCCcCEEE
Q 021156          211 SDVYLDERVLDFLASYADEFLVHGVDVEGKKLG---IDDELVALLGKYSPIPVTYAGGVTTM-ADLEKIKVAGIGRVDVT  286 (316)
Q Consensus       211 ~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G---~d~eli~~l~~~~~iPVIasGGI~s~-eDi~~l~~~G~g~~gVi  286 (316)
                      .--++.+..+...+.|++.+-+.-=+.-|.+.|   .|++.++++.+.+++|+..-||=+.+ ++++++.+.|  +..+=
T Consensus       153 ~~T~Peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~~vpLVlHGgSG~~~e~i~~ai~~G--v~KiN  230 (286)
T 1gvf_A          153 FLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELG--VTKVN  230 (286)
T ss_dssp             SSCCHHHHHHHHHHHCCSEEEECSSCCSSCCSSCCCCCHHHHHHHHHHCCSCEEECCCTTCCHHHHHHHHHTT--EEEEE
T ss_pred             cCCCHHHHHHHHHHHCCCEEEeecCccccCcCCCCccCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHCC--CeEEE
Confidence            113577777777789999765432244455543   49999999999999999999987654 5588899998  98999


Q ss_pred             Eccch
Q 021156          287 VGSAL  291 (316)
Q Consensus       287 vG~Al  291 (316)
                      |++.+
T Consensus       231 i~Tdl  235 (286)
T 1gvf_A          231 VATEL  235 (286)
T ss_dssp             ECHHH
T ss_pred             EChHH
Confidence            99866

>4djd_D C/Fe-SP, corrinoid/iron-sulfur protein small subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_D* 4djf_D*

Probab=95.28  E-value=0.11  Score=48.61  Aligned_cols=144  Identities=14%  Similarity=0.088  Sum_probs=89.0

Q ss_pred             cCHHHHHHHHH-HcCCCcceEEEecCC--cc-----cHHHHH---HHH-HhCCCcEEEecCCC-H---HHHHHHHHcCCC
Q 021156           93 KSAAEFANLYK-EDGLTGGHAIMLGAD--PL-----SKAAAI---EAL-HAYPGGLQVGGGIN-S---DNSLSYIEEGAT  156 (316)
Q Consensus        93 ~~p~e~a~~~~-~~G~~~l~lvDLda~--~~-----~~~~i~---~~v-~~~~~pl~vGGGIr-~---e~~~~~l~~Gad  156 (316)
                      .+|.++|+... +.|++   ++|+.+.  .+     ..+++.   +.+ +.+++||.++|==+ +   +-+++.+++|++
T Consensus        80 ~~~~~~A~~~v~~~GAd---iIDIg~eStrP~~~~vs~ee~~~~V~~v~~~~~vPlsIDg~~~~T~~~eV~eaAleagag  156 (323)
T 4djd_D           80 NEPGRWAQKCVAEYGAD---LIYLKLDGADPEGANHSVDQCVATVKEVLQAVGVPLVVVGCGDVEKDHEVLEAVAEAAAG  156 (323)
T ss_dssp             TCHHHHHHHHHHTTCCS---EEEEECGGGCTTTTCCCHHHHHHHHHHHHHHCCSCEEEECCSCHHHHHHHHHHHHHHTTT
T ss_pred             HhHHHHHHHHHHHcCCC---EEEEcCccCCCCCCCCCHHHHHHHHHHHHhhCCceEEEECCCCCCCCHHHHHHHHHhcCC
Confidence            47999999988 67765   8999643  11     122333   333 34789999995443 3   558999999988


Q ss_pred             -EEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEee--eeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCC--CEEE
Q 021156          157 -HVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDL--SCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYA--DEFL  231 (316)
Q Consensus       157 -~VVigt~~~~~~~~~~eli~ei~~~~G~~~Ivvsl--D~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga--~~il  231 (316)
                       +.+|++....+    .+.+.+++.+|| -.+++.-  |+.                   -..+....+.+.|+  +.|+
T Consensus       157 ~~~lINsv~~~~----~~~m~~laa~~g-~~vVlmh~~d~~-------------------~~~~l~~~a~~~GI~~e~II  212 (323)
T 4djd_D          157 ENLLLGNAEQEN----YKSLTAACMVHK-HNIIARSPLDIN-------------------ICKQLNILINEMNLPLDHIV  212 (323)
T ss_dssp             SCCEEEEEBTTB----CHHHHHHHHHHT-CEEEEECSSCHH-------------------HHHHHHHHHHTTTCCGGGEE
T ss_pred             CCCeEEECCccc----HHHHHHHHHHhC-CeEEEEccchHH-------------------HHHHHHHHHHHcCCCHHHEE
Confidence             45777776654    344556778886 3343322  110                   13455667888998  5676


Q ss_pred             EeecCC-ccccCCCCHHHHHHHhh-------cCCCcEEEE
Q 021156          232 VHGVDV-EGKKLGIDDELVALLGK-------YSPIPVTYA  263 (316)
Q Consensus       232 vtdi~~-dG~~~G~d~eli~~l~~-------~~~iPVIas  263 (316)
                      +-...- -|+....+++++++++.       ....|++++
T Consensus       213 lDPg~g~fgk~~e~~l~~l~~ir~~al~~~~~lg~PvL~G  252 (323)
T 4djd_D          213 IDPSIGGLGYGIEYSFSIMERIRLGALQGDKMLSMPVICT  252 (323)
T ss_dssp             EECCCCCTTTTHHHHHHHHHHHHHHHHHTCGGGCSCBEEE
T ss_pred             EeCCCccccCCHHHHHHHHHHHHHHhhcccccCCCCEEEe
Confidence            433221 22222237777877764       468899986

>2zc8_A N-acylamino acid racemase; octamer, TIM beta/alpha-barrel, metal-binding, metal binding; 1.95A {Thermus thermophilus}

Probab=95.24  E-value=0.11  Score=48.85  Aligned_cols=137  Identities=16%  Similarity=0.037  Sum_probs=93.3

Q ss_pred             HHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHH
Q 021156          145 DNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLA  224 (316)
Q Consensus       145 e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~  224 (316)
                      ++++++.+.|.+.+=+--.    ++.+.+.++.+.+.+ + .+-+.+|+.          .+|...   + .++++.+.+
T Consensus       147 ~~a~~~~~~G~~~iKik~~----~~~d~~~v~avr~a~-~-~~~l~vDan----------~~~~~~---~-~~~~~~l~~  206 (369)
T 2zc8_A          147 RVVERHLEEGYRRIKLKIK----PGWDYEVLKAVREAF-P-EATLTADAN----------SAYSLA---N-LAQLKRLDE  206 (369)
T ss_dssp             HHHHHHHHTTCSCEEEECB----TTBSHHHHHHHHHHC-T-TSCEEEECT----------TCCCGG---G-HHHHHGGGG
T ss_pred             HHHHHHHHhhhheeeeecC----hhHHHHHHHHHHHHc-C-CCeEEEecC----------CCCCHH---H-HHHHHHHHh
Confidence            4567778889876544221    223488999998888 3 455777873          256432   4 678888888


Q ss_pred             cCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHH
Q 021156          225 SYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVV  304 (316)
Q Consensus       225 ~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~  304 (316)
                      .++..|  -    +. ....|++.++++++.+++||.+..-+.+.+++.++++.+ .++.+.+=-+-  .+|-....++.
T Consensus       207 ~~i~~i--E----qP-~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~-~~d~v~ik~~~--~GGit~~~~i~  276 (369)
T 2zc8_A          207 LRLDYI--E----QP-LAYDDLLDHAKLQRELSTPICLDESLTGAEKARKAIELG-AGRVFNVKPAR--LGGHGESLRVH  276 (369)
T ss_dssp             GCCSCE--E----CC-SCTTCSHHHHHHHHHCSSCEEESTTCCSHHHHHHHHHHT-CCSEEEECHHH--HTSHHHHHHHH
T ss_pred             CCCcEE--E----CC-CCcccHHHHHHHHhhCCCCEEEcCccCCHHHHHHHHHhC-CCCEEEEchhh--hCCHHHHHHHH
Confidence            877643  2    11 223488999999988899999999999999999999988 47777775444  45543445555


Q ss_pred             HHHHhhc
Q 021156          305 AWHAQQE  311 (316)
Q Consensus       305 ~~~~~~~  311 (316)
                      ++++++.
T Consensus       277 ~~A~~~g  283 (369)
T 2zc8_A          277 ALAESAG  283 (369)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHcC
Confidence            5555543

>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*

Probab=95.21  E-value=0.043  Score=51.81  Aligned_cols=72  Identities=15%  Similarity=0.180  Sum_probs=51.5

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCC------------cccH---HHHHHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCE
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGAD------------PLSK---AAAIEALHAYPGGLQVGGGIN-SDNSLSYIEEGATH  157 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~------------~~~~---~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~  157 (316)
                      ++ +.|+...++|++.+.+- ..++            .+..   ..+.+.+...++|++..|||+ ..|+.+++.+||+.
T Consensus       171 t~-e~A~~a~~aGaD~I~v~-~g~G~~~~~r~~~g~~~p~~~~l~~v~~~~~~~~ipvIa~GGI~~g~di~kAlalGA~~  248 (351)
T 2c6q_A          171 TG-EMVEELILSGADIIKVG-IGPGSVCTTRKKTGVGYPQLSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAGADF  248 (351)
T ss_dssp             SH-HHHHHHHHTTCSEEEEC-SSCSTTBCHHHHHCBCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSE
T ss_pred             CH-HHHHHHHHhCCCEEEEC-CCCCcCcCccccCCCCccHHHHHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCc
Confidence            45 47888889999977442 2221            0111   223333344689999999999 59999999999999


Q ss_pred             EEeCCeeecC
Q 021156          158 VIVTSYVFNN  167 (316)
Q Consensus       158 VVigt~~~~~  167 (316)
                      |.+|+.+...
T Consensus       249 V~vG~~fl~~  258 (351)
T 2c6q_A          249 VMLGGMLAGH  258 (351)
T ss_dssp             EEESTTTTTB
T ss_pred             eeccHHHhcC
Confidence            9999988764

>3p3b_A Mandelate racemase/muconate lactonizing protein; enolase superfamily fold, galacturonate dehydratase, D-tartr galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP} PDB: 3ops_A* 3n4f_A* 3qpe_A*

Probab=95.21  E-value=0.044  Score=52.25  Aligned_cols=135  Identities=10%  Similarity=0.052  Sum_probs=86.7

Q ss_pred             HHHHHHHHcCCCEEEe--CC---------eeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceeccc
Q 021156          145 DNSLSYIEEGATHVIV--TS---------YVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDV  213 (316)
Q Consensus       145 e~~~~~l~~Gad~VVi--gt---------~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~  213 (316)
                      ++++++.+.|.+.+=+  |.         ....    +.+.++.+.+.+|+ .+.+.+|+   ++       +|...   
T Consensus       154 ~~a~~~~~~Gf~~vKik~g~~~~~~~~~~~~~~----~~e~v~avR~~~g~-d~~l~vDa---n~-------~~~~~---  215 (392)
T 3p3b_A          154 EEAMQGYAKGQRHFKIKVGRGGRHMPLWEGTKR----DIAIVRGISEVAGP-AGKIMIDA---NN-------AYNLN---  215 (392)
T ss_dssp             HHHHHHHHTTCCCEEEECCHHHHTSCHHHHHHH----HHHHHHHHHHHHCT-TCCEEEEC---TT-------CCCHH---
T ss_pred             HHHHHHHHhCCCEEEECcCcCcccCCccccHHH----HHHHHHHHHHHhCC-CCeEEEEC---CC-------CCCHH---
Confidence            4466778889876543  32         1122    36888888888975 45566887   32       45421   


Q ss_pred             CHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhc-----CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEc
Q 021156          214 YLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKY-----SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVG  288 (316)
Q Consensus       214 ~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~-----~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG  288 (316)
                      +..++++.+.+.++..+  -    +- .. .|++.++++++.     +++||.+.+ +.+.++++++++.+ .++.+.+=
T Consensus       216 ~ai~~~~~l~~~~i~~i--E----~P-~~-~d~~~~~~l~~~l~~~g~~iPIa~dE-~~~~~~~~~~i~~~-~~d~v~ik  285 (392)
T 3p3b_A          216 LTKEVLAALSDVNLYWL--E----EA-FH-EDEALYEDLKEWLGQRGQNVLIADGE-GLASPHLIEWATRG-RVDVLQYD  285 (392)
T ss_dssp             HHHHHHHHTTTSCEEEE--E----CS-SS-CCHHHHHHHHHHHHHHTCCCEEEECC-SSCCTTHHHHHHTT-SCCEECCB
T ss_pred             HHHHHHHHHHhcCCCEE--e----cC-Cc-ccHHHHHHHHHhhccCCCCccEEecC-CCCHHHHHHHHHcC-CCCEEEeC
Confidence            34566667666554421  1    11 23 589999999887     899999999 99999999999988 36656555


Q ss_pred             cchhhccCcccHHHHHHHHHhh
Q 021156          289 SALDIFGGNLAYKDVVAWHAQQ  310 (316)
Q Consensus       289 ~Al~~~~g~~~~~~~~~~~~~~  310 (316)
                      -+-  . |-....++.++++++
T Consensus       286 ~~~--~-Git~~~~i~~~A~~~  304 (392)
T 3p3b_A          286 IIW--P-GFTHWMELGEKLDAH  304 (392)
T ss_dssp             TTT--B-CHHHHHHHHHHHHHT
T ss_pred             ccc--c-CHHHHHHHHHHHHHc
Confidence            444  3 433334444455443

>3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A

Probab=95.21  E-value=0.076  Score=47.26  Aligned_cols=129  Identities=16%  Similarity=0.151  Sum_probs=73.5

Q ss_pred             HHHHHHHHcCCCE--EEeCCeeecCCCC--CHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcce--ecccCHHHH
Q 021156          145 DNSLSYIEEGATH--VIVTSYVFNNGQM--DLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQK--FSDVYLDER  218 (316)
Q Consensus       145 e~~~~~l~~Gad~--VVigt~~~~~~~~--~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~--~~~~~~~e~  218 (316)
                      .+++.+++.|||-  +|++-..+.++..  -.+.+.++++..+ ..++     |      .+.-.+...  .+.-.....
T Consensus        84 ~E~~~Ai~~GAdEIDmVinig~lk~g~~~~v~~ei~~v~~a~~-~~~l-----K------vIiEt~~L~~~~t~eei~~a  151 (231)
T 3ndo_A           84 TEAELAVAAGATEIDMVIDVGAALAGDLDAVSADITAVRKAVR-AATL-----K------VIVESAALLEFSGEPLLADV  151 (231)
T ss_dssp             HHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTT-TSEE-----E------EECCHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEEEeehHhhhcccHHHHHHHHHHHHHHcc-CCce-----E------EEEECcccCCCCCHHHHHHH
Confidence            4688899999996  4555444433321  1244555555553 2221     1      111111110  011124445


Q ss_pred             HHHHHHcCCCEEEEeecCCcccc--CCCCHHHHHHHhhc--CCCcEEEEeCCCCHHHHHHHHHhCCCcC--EEEEccch
Q 021156          219 VLDFLASYADEFLVHGVDVEGKK--LGIDDELVALLGKY--SPIPVTYAGGVTTMADLEKIKVAGIGRV--DVTVGSAL  291 (316)
Q Consensus       219 a~~~~~~Ga~~ilvtdi~~dG~~--~G~d~eli~~l~~~--~~iPVIasGGI~s~eDi~~l~~~G~g~~--gVivG~Al  291 (316)
                      ++...+.|++.+= |+   .|..  .|...+-++.+++.  .+++|-++|||++.+|+.+++++|  ++  |.-.|.++
T Consensus       152 ~~ia~~aGADfVK-TS---TGf~~~~gAt~edv~lm~~~v~~~v~VKaaGGIrt~~~a~~~i~aG--a~RiGtS~g~~I  224 (231)
T 3ndo_A          152 CRVARDAGADFVK-TS---TGFHPSGGASVQAVEIMARTVGERLGVKASGGIRTAEQAAAMLDAG--ATRLGLSGSRAV  224 (231)
T ss_dssp             HHHHHHTTCSEEE-CC---CSCCTTCSCCHHHHHHHHHHHTTTSEEEEESSCCSHHHHHHHHHTT--CSEEEESSHHHH
T ss_pred             HHHHHHHCcCEEE-cC---CCCCCCCCCCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHhc--chhcccchHHHH
Confidence            6677789999662 32   2332  34445544444433  479999999999999999999999  66  44444444

>4a35_A Mitochondrial enolase superfamily member 1; isomerase; 1.74A {Homo sapiens}

Probab=95.19  E-value=0.15  Score=49.52  Aligned_cols=138  Identities=13%  Similarity=0.045  Sum_probs=94.6

Q ss_pred             HHHHHHHHcCCCEE--EeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH
Q 021156          145 DNSLSYIEEGATHV--IVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF  222 (316)
Q Consensus       145 e~~~~~l~~Gad~V--Vigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~  222 (316)
                      +.++++.+.|...+  =+|.....+    .+.++.+.+.+|+ .+-+.+|+.          .+|...   +..++++.+
T Consensus       207 ~~a~~~~~~Gf~~~KlKvG~~~~~d----~~~v~avR~a~G~-~~~l~vDaN----------~~~~~~---~A~~~~~~L  268 (441)
T 4a35_A          207 QLCAQALKDGWTRFKVKVGADLQDD----MRRCQIIRDMIGP-EKTLMMDAN----------QRWDVP---EAVEWMSKL  268 (441)
T ss_dssp             HHHHHHHHTTCCEEEEECSSCHHHH----HHHHHHHHHHHCT-TSEEEEECT----------TCCCHH---HHHHHHHHH
T ss_pred             HHHHHHHHCCCCEEEEcCCCCHHHH----HHHHHHHHHHhCC-CCeEEEECC----------CCCCHH---HHHHHHHhh
Confidence            45777888998854  456544444    7889999999985 456788873          356532   356788888


Q ss_pred             HHcCCCEEEEeecCCccccCCCCHHHHHHHhhc---CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCccc
Q 021156          223 LASYADEFLVHGVDVEGKKLGIDDELVALLGKY---SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLA  299 (316)
Q Consensus       223 ~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~---~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~  299 (316)
                      .+.++..+       +.=...-|++.++++++.   +++||.+.--+.+..++.++++.+ .++.+.+--+-  .+|-..
T Consensus       269 ~~~~~~~i-------EeP~~~~d~~~~~~l~~~l~~~~iPIa~gE~~~~~~~~~~~l~~~-a~div~~d~~~--~GGit~  338 (441)
T 4a35_A          269 AKFKPLWI-------EEPTSPDDILGHATISKALVPLGIGIATGEQCHNRVIFKQLLQAK-ALQFLQIDSCR--LGSVNE  338 (441)
T ss_dssp             GGGCCSEE-------ECCSCTTCHHHHHHHHHHHGGGTCEEEECTTCCSHHHHHHHHHTT-CCSEECCCTTT--SSHHHH
T ss_pred             cccCccEE-------eCCCCcccHHHHHHHHHhccCCCCCEEeCCccccHHHHHHHHHcC-CCCEEEECccc--cCCHHH
Confidence            88877644       111223378888899875   789999999999999999999987 36666655444  444444


Q ss_pred             HHHHHHHHHhh
Q 021156          300 YKDVVAWHAQQ  310 (316)
Q Consensus       300 ~~~~~~~~~~~  310 (316)
                      ..++.++++++
T Consensus       339 ~~kia~lA~~~  349 (441)
T 4a35_A          339 NLSVLLMAKKF  349 (441)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHc
Confidence            45555555543

>1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: CIT; 1.65A {Thermotoga maritima} SCOP: c.1.29.1

Probab=95.17  E-value=0.012  Score=50.84  Aligned_cols=128  Identities=13%  Similarity=0.118  Sum_probs=75.0

Q ss_pred             cHHHHHHHHHhCCCcEEEe----cCCC-HHHHHHHHH-cCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeee
Q 021156          121 SKAAAIEALHAYPGGLQVG----GGIN-SDNSLSYIE-EGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCR  194 (316)
Q Consensus       121 ~~~~i~~~v~~~~~pl~vG----GGIr-~e~~~~~l~-~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k  194 (316)
                      +.+.+.+.+++.+.|+.+=    .|+. .+++-.+++ .+++.+ ++|-        +..+..+ +++|=.    .+-  
T Consensus        44 ~L~~iv~~ik~~gK~vivh~DlI~GLs~d~~ai~fL~~~~pdGI-IsTk--------~~~i~~A-kk~GL~----tIq--  107 (188)
T 1vkf_A           44 NLKFHLKILKDRGKTVFVDMDFVNGLGEGEEAILFVKKAGADGI-ITIK--------PKNYVVA-KKNGIP----AVL--  107 (188)
T ss_dssp             THHHHHHHHHHTTCEEEEEGGGEETCCSSHHHHHHHHHHTCSEE-EESC--------HHHHHHH-HHTTCC----EEE--
T ss_pred             HHHHHHHHHHHCCCeEEEecCcccccCCCHHHHHHHHhcCCCEE-EcCc--------HHHHHHH-HHcCCE----Eee--
Confidence            4556666666557666653    5665 455433334 477765 4442        4444444 455521    111  


Q ss_pred             ecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCC-CHHHHHHHhhcCCCcEEEEeCCCCHHHHH
Q 021156          195 KKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGI-DDELVALLGKYSPIPVTYAGGVTTMADLE  273 (316)
Q Consensus       195 ~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~-d~eli~~l~~~~~iPVIasGGI~s~eDi~  273 (316)
                            +++.-.    + ..+...++...+...+.+=+.        -|+ -.+.++++   +++|+|++|+|++.||+.
T Consensus       108 ------R~FliD----s-~al~~~~~~I~~~kPD~iEiL--------Pg~v~p~~I~~v---~~~PiIaGGlI~t~edv~  165 (188)
T 1vkf_A          108 ------RFFALD----S-KAVERGIEQIETLGVDVVEVL--------PGAVAPKVARKI---PGRTVIAAGLVETEEEAR  165 (188)
T ss_dssp             ------EEECCS----H-HHHHHHHHHHHHHTCSEEEEE--------SGGGHHHHHTTS---TTSEEEEESCCCSHHHHH
T ss_pred             ------EEEEEE----e-HHHhhhhhhccccCCCeEeec--------CCCchHHHHHHh---cCCCEEEECCcCCHHHHH
Confidence                  121110    0 123344555555566653222        444 44566666   689999999999999999


Q ss_pred             HHHHhCCCcCEEEEcc
Q 021156          274 KIKVAGIGRVDVTVGS  289 (316)
Q Consensus       274 ~l~~~G~g~~gVivG~  289 (316)
                      + +++|  +++|..|+
T Consensus       166 ~-l~aG--A~aIsTs~  178 (188)
T 1vkf_A          166 E-ILKH--VSAISTSS  178 (188)
T ss_dssp             H-HTTT--SSEEEECC
T ss_pred             H-HHCC--CeEEEeCC
Confidence            9 9998  88888875

>3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0

Probab=95.17  E-value=0.28  Score=45.05  Aligned_cols=149  Identities=17%  Similarity=0.146  Sum_probs=97.5

Q ss_pred             hCCCcE--EEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcc
Q 021156          131 AYPGGL--QVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQ  208 (316)
Q Consensus       131 ~~~~pl--~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~  208 (316)
                      ...+|+  ..+=|-..+.+++++++|.+.|.++...+.- +=|.+..+++++...+-.  +++-.-       +-.-|+.
T Consensus        78 ~~~VPValHlDHg~~~e~i~~ai~~GFtSVMiDgS~~p~-eeNi~~Tk~vv~~ah~~g--vsVEaE-------lG~vgG~  147 (288)
T 3q94_A           78 NITVPVAIHLDHGSSFEKCKEAIDAGFTSVMIDASHHPF-EENVETTKKVVEYAHARN--VSVEAE-------LGTVGGQ  147 (288)
T ss_dssp             TCCSCEEEEEEEECSHHHHHHHHHHTCSEEEECCTTSCH-HHHHHHHHHHHHHHHTTT--CEEEEE-------ESBCBCS
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHcCCCeEEEeCCCCCH-HHHHHHHHHHHHHHHHcC--CeEEEE-------eeeeccc
Confidence            455664  5566666799999999999999997655421 002566666665432222  333321       1111222


Q ss_pred             e-------ecccCHHHHHHHHHHcCCCEEEEeecCCccccCC---CCHHHHHHHhhcCCCcEEEEeCCCCH-HHHHHHHH
Q 021156          209 K-------FSDVYLDERVLDFLASYADEFLVHGVDVEGKKLG---IDDELVALLGKYSPIPVTYAGGVTTM-ADLEKIKV  277 (316)
Q Consensus       209 ~-------~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G---~d~eli~~l~~~~~iPVIasGGI~s~-eDi~~l~~  277 (316)
                      +       ..--++.+..+...+.|++.+-+.-=+.-|.+.|   .|++.++++.+.+++|+..-||=+.+ ++++++.+
T Consensus       148 Ed~~~~~~~~yT~Peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~v~vpLVlHGgSG~~~e~i~~ai~  227 (288)
T 3q94_A          148 EDDVIAEGVIYADPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFTGVPLVLHGGTGIPTADIEKAIS  227 (288)
T ss_dssp             CSSCGGGGCBCCCHHHHHHHHHHHCCSEEEECSSCBSSCCSSSCCCCHHHHHHHHHHHCSCEEECCCTTCCHHHHHHHHH
T ss_pred             cCCcCCccccCCCHHHHHHHHHHHCCCEEEEEcCcccCCcCCCCccCHHHHHHHHHhcCCCEEEeCCCCCCHHHHHHHHH
Confidence            1       0113577777777789999875422234455543   49999999999999999999887665 45899999


Q ss_pred             hCCCcCEEEEccch
Q 021156          278 AGIGRVDVTVGSAL  291 (316)
Q Consensus       278 ~G~g~~gVivG~Al  291 (316)
                      .|  +..+=|++-+
T Consensus       228 ~G--v~KiNi~Tdl  239 (288)
T 3q94_A          228 LG--TSKINVNTEN  239 (288)
T ss_dssp             TT--EEEEEECHHH
T ss_pred             cC--CeEEEEChHH
Confidence            88  9899999866

>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A

Probab=95.10  E-value=0.027  Score=51.93  Aligned_cols=55  Identities=18%  Similarity=0.238  Sum_probs=40.6

Q ss_pred             HHHHHHhCCCcEE--EecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCH-HHHHHHHHH
Q 021156          125 AIEALHAYPGGLQ--VGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDL-ERLKDLVRV  181 (316)
Q Consensus       125 i~~~v~~~~~pl~--vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~-eli~ei~~~  181 (316)
                      +.++.+..++|+.  +.|||+ .+++.+++++||+.|++|+.++..+  +| +.++++.+.
T Consensus       199 i~~i~~~~~iPvi~~a~GGI~~~~d~~~~~~~GadgV~vGsai~~~~--~p~~~~~~l~~~  257 (305)
T 2nv1_A          199 LLQIKKDGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSD--NPAKFAKAIVEA  257 (305)
T ss_dssp             HHHHHHHTSCSSCEEBCSCCCSHHHHHHHHHTTCSCEEECGGGGGSS--CHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCEEEEeccCCCCHHHHHHHHHcCCCEEEEcHHHHcCC--CHHHHHHHHHHH
Confidence            3333345778998  999996 6999999999999999999998642  24 355555443

>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A

Probab=95.08  E-value=0.018  Score=49.49  Aligned_cols=37  Identities=24%  Similarity=0.320  Sum_probs=33.5

Q ss_pred             HhC-CCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeec
Q 021156          130 HAY-PGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus       130 ~~~-~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      +.. ++|+++.|||+.+++..++++||+.|++||..+.
T Consensus       146 ~~~~~~pvia~GGI~~~~~~~~~~~Ga~~v~vGs~i~~  183 (205)
T 1wa3_A          146 GPFPNVKFVPTGGVNLDNVCEWFKAGVLAVGVGSALVK  183 (205)
T ss_dssp             TTCTTCEEEEBSSCCTTTHHHHHHHTCSCEEECHHHHC
T ss_pred             HhCCCCcEEEcCCCCHHHHHHHHHCCCCEEEECccccC
Confidence            345 7999999999988999999999999999998876

>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A

Probab=95.08  E-value=0.052  Score=48.76  Aligned_cols=70  Identities=21%  Similarity=0.206  Sum_probs=52.2

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHhCCCcEEEecCCC---HHH----HHHHHHcCCCEEEeCCeeec
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAYPGGLQVGGGIN---SDN----SLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~~~pl~vGGGIr---~e~----~~~~l~~Gad~VVigt~~~~  166 (316)
                      ++.++++...+.|++.+.+-+    ..+...+.++.+.+++|+..-|||+   .++    +..++++||+.|.+|+....
T Consensus       167 ~~~~~a~~a~~~Gad~i~~~~----~~~~~~l~~i~~~~~ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~gv~vg~~i~~  242 (273)
T 2qjg_A          167 LVAHAARLGAELGADIVKTSY----TGDIDSFRDVVKGCPAPVVVAGGPKTNTDEEFLQMIKDAMEAGAAGVAVGRNIFQ  242 (273)
T ss_dssp             HHHHHHHHHHHTTCSEEEECC----CSSHHHHHHHHHHCSSCEEEECCSCCSSHHHHHHHHHHHHHHTCSEEECCHHHHT
T ss_pred             HHHHHHHHHHHcCCCEEEECC----CCCHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEeeHHhhC
Confidence            455666778888988554432    2345556666667889999999998   355    77777899999999999987


Q ss_pred             C
Q 021156          167 N  167 (316)
Q Consensus       167 ~  167 (316)
                      .
T Consensus       243 ~  243 (273)
T 2qjg_A          243 H  243 (273)
T ss_dssp             S
T ss_pred             C
Confidence            5

>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A

Probab=95.07  E-value=0.046  Score=47.64  Aligned_cols=83  Identities=18%  Similarity=0.280  Sum_probs=57.5

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHH-hC-CCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCC
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALH-AY-PGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMD  171 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~-~~-~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~  171 (316)
                      +|.|+.+.+ +.|++.+.++  -+....-...++.++ .. ++|+..-|||+.+++..++++|++.|++||..+..   +
T Consensus       113 t~~e~~~A~-~~Gad~v~~f--pa~~~gG~~~lk~l~~~~~~ipvvaiGGI~~~n~~~~l~aGa~~vavgSai~~~---d  186 (207)
T 2yw3_A          113 TPTEVERAL-ALGLSALKFF--PAEPFQGVRVLRAYAEVFPEVRFLPTGGIKEEHLPHYAALPNLLAVGGSWLLQG---N  186 (207)
T ss_dssp             SHHHHHHHH-HTTCCEEEET--TTTTTTHHHHHHHHHHHCTTCEEEEBSSCCGGGHHHHHTCSSBSCEEESGGGSS---C
T ss_pred             CHHHHHHHH-HCCCCEEEEe--cCccccCHHHHHHHHhhCCCCcEEEeCCCCHHHHHHHHhCCCcEEEEehhhhCC---C
Confidence            577765544 5688877662  121110223344444 45 79999999999999999999999999999988753   4


Q ss_pred             HHHHHHHHHHh
Q 021156          172 LERLKDLVRVV  182 (316)
Q Consensus       172 ~eli~ei~~~~  182 (316)
                      ++.+++..+++
T Consensus       187 ~~~i~~~a~~~  197 (207)
T 2yw3_A          187 LEAVRAKVRAA  197 (207)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            66666666555

>1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A

Probab=95.03  E-value=0.2  Score=46.19  Aligned_cols=179  Identities=13%  Similarity=0.034  Sum_probs=103.5

Q ss_pred             CHHHHHHHHHHcCCCcceEEEec--C--Cc-----ccHHH----HHHHHHhCCCcEEEec-----CCC-H-HHHHHHHHc
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLG--A--DP-----LSKAA----AIEALHAYPGGLQVGG-----GIN-S-DNSLSYIEE  153 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLd--a--~~-----~~~~~----i~~~v~~~~~pl~vGG-----GIr-~-e~~~~~l~~  153 (316)
                      |+. .|+...++|++.+++=+..  .  +.     ....+    +..+.+.++.||++++     +.. . +.++++.++
T Consensus        28 D~~-sA~~~~~aG~~ai~vsg~~~a~~lG~pD~~~vt~~em~~~~~~I~~~~~~PviaD~d~Gyg~~~~v~~~v~~l~~a  106 (295)
T 1s2w_A           28 NGL-SARIVQEAGFKGIWGSGLSVSAQLGVRDSNEASWTQVVEVLEFMSDASDVPILLDADTGYGNFNNARRLVRKLEDR  106 (295)
T ss_dssp             SHH-HHHHHHHHTCSCEEECCHHHHHTC---------CHHHHHHHHHHHHTCSSCEEEECCSSCSSHHHHHHHHHHHHHT
T ss_pred             CHH-HHHHHHHcCCCEEEeChHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEecCCCCCCCHHHHHHHHHHHHHc
Confidence            676 7888888899988777431  1  11     12222    3333456789998873     221 2 568889999


Q ss_pred             CCCEEEe-CCeeecC--------CCC-CH-HHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCc-ceecccCHHHHHHH
Q 021156          154 GATHVIV-TSYVFNN--------GQM-DL-ERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRW-QKFSDVYLDERVLD  221 (316)
Q Consensus       154 Gad~VVi-gt~~~~~--------~~~-~~-eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw-~~~~~~~~~e~a~~  221 (316)
                      ||.-|-| +....+.        .++ +. +.+.++....- .+.  .-|++.     .-++... ....--..++.++.
T Consensus       107 Gaagv~iED~~~~k~cgH~gg~~k~l~p~~e~~~rI~Aa~~-a~~--~~~~~i-----~aRtda~~a~~g~~~ai~Ra~a  178 (295)
T 1s2w_A          107 GVAGACLEDKLFPKTNSLHDGRAQPLADIEEFALKIKACKD-SQT--DPDFCI-----VARVEAFIAGWGLDEALKRAEA  178 (295)
T ss_dssp             TCCEEEEECBCC--------CTTCCBCCHHHHHHHHHHHHH-HCS--STTCEE-----EEEECTTTTTCCHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCccccccCCCCCcccCHHHHHHHHHHHHH-hcc--cCCcEE-----EEeehHHhccccHHHHHHHHHH
Confidence            9999887 3221110        011 12 34444443321 110  011110     1122211 10001257888999


Q ss_pred             HHHcCCCEEEEee-cCCccccCCCCHHHHHHHhhcCC--CcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          222 FLASYADEFLVHG-VDVEGKKLGIDDELVALLGKYSP--IPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       222 ~~~~Ga~~ilvtd-i~~dG~~~G~d~eli~~l~~~~~--iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      +.+.|++.+++.. +        ++.+.++++.+.++  +|++++-+-...-++.+|.++|  +.-|+.|.++
T Consensus       179 y~eAGAd~i~~e~~~--------~~~~~~~~i~~~~~~~~P~i~~~~~~~~~~~~eL~~lG--v~~v~~~~~~  241 (295)
T 1s2w_A          179 YRNAGADAILMHSKK--------ADPSDIEAFMKAWNNQGPVVIVPTKYYKTPTDHFRDMG--VSMVIWANHN  241 (295)
T ss_dssp             HHHTTCSEEEECCCS--------SSSHHHHHHHHHHTTCSCEEECCSTTTTSCHHHHHHHT--CCEEEECSHH
T ss_pred             HHHcCCCEEEEcCCC--------CCHHHHHHHHHHcCCCCCEEEeCCCCCCCCHHHHHHcC--CcEEEEChHH
Confidence            9999999988763 2        34578888888766  9999884421122478888898  8899999877

>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1

Probab=95.02  E-value=0.015  Score=55.87  Aligned_cols=70  Identities=19%  Similarity=0.128  Sum_probs=50.4

Q ss_pred             HHHHHHHHcCCCcceEEEecC-----------C-cccHHHHHHHH---HhCCCcEEEecCCC-HHHHHHHHHcCCCEEEe
Q 021156           97 EFANLYKEDGLTGGHAIMLGA-----------D-PLSKAAAIEAL---HAYPGGLQVGGGIN-SDNSLSYIEEGATHVIV  160 (316)
Q Consensus        97 e~a~~~~~~G~~~l~lvDLda-----------~-~~~~~~i~~~v---~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVi  160 (316)
                      +.|+...++|++.+.+ -..+           . .+....+.++.   ...++|++..|||+ .+|+.+++.+||+.|.+
T Consensus       206 ~~a~~a~~~Gad~I~v-g~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ipVia~GGI~~~~d~~~ala~GAd~V~i  284 (404)
T 1eep_A          206 EAALDLISVGADCLKV-GIGPGSICTTRIVAGVGVPQITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVMI  284 (404)
T ss_dssp             HHHHHHHTTTCSEEEE-CSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred             HHHHHHHhcCCCEEEE-CCCCCcCcCccccCCCCcchHHHHHHHHHHHhhcCceEEEECCCCCHHHHHHHHHcCCCHHhh
Confidence            5788888899987766 2111           1 11222222222   24689999999998 59999999999999999


Q ss_pred             CCeeecC
Q 021156          161 TSYVFNN  167 (316)
Q Consensus       161 gt~~~~~  167 (316)
                      |+.+...
T Consensus       285 G~~~l~~  291 (404)
T 1eep_A          285 GNLFAGT  291 (404)
T ss_dssp             CHHHHTB
T ss_pred             CHHHhcC
Confidence            9998775

>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1

Probab=94.99  E-value=0.083  Score=46.54  Aligned_cols=76  Identities=14%  Similarity=0.137  Sum_probs=50.3

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCC----cccHHHHHHHHHhC--CCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeec
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGAD----PLSKAAAIEALHAY--PGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~----~~~~~~i~~~v~~~--~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      +..++++...++|++.+   ..+.+    ......+....+.+  ++|+..-|||+ .+|+.+++++||++|=+++.   
T Consensus       133 ~~~~~a~~a~eaGad~I---~tstg~~~gga~~~~i~~v~~~v~~~ipVia~GGI~t~~da~~~l~aGA~~iG~s~~---  206 (225)
T 1mzh_A          133 EIKKAVEICIEAGADFI---KTSTGFAPRGTTLEEVRLIKSSAKGRIKVKASGGIRDLETAISMIEAGADRIGTSSG---  206 (225)
T ss_dssp             HHHHHHHHHHHHTCSEE---ECCCSCSSSCCCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEESCH---
T ss_pred             HHHHHHHHHHHhCCCEE---EECCCCCCCCCCHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhCchHHHHccH---
Confidence            45678888888999977   22221    12333333333333  69999999999 59999999999998644332   


Q ss_pred             CCCCCHHHHHHHHH
Q 021156          167 NGQMDLERLKDLVR  180 (316)
Q Consensus       167 ~~~~~~eli~ei~~  180 (316)
                           .+.++++.+
T Consensus       207 -----~~i~~~~~~  215 (225)
T 1mzh_A          207 -----ISIAEEFLK  215 (225)
T ss_dssp             -----HHHHHHHHH
T ss_pred             -----HHHHHHHHh
Confidence                 456666543

>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A

Probab=94.96  E-value=0.61  Score=45.43  Aligned_cols=176  Identities=15%  Similarity=0.070  Sum_probs=113.4

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCCcc---cHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCC
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGADPL---SKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNG  168 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~~~---~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~  168 (316)
                      .+|.++.+ ...+|++.+-   |+++..   ....+.+.++..++.+.|-  +. .+++++++++|++.|-++..-+.+-
T Consensus       118 ~d~~Qi~e-a~~~GAD~IL---Li~a~l~~~~l~~l~~~a~~lgm~~LvE--vh~~eE~~~A~~lga~iIGinnr~L~t~  191 (452)
T 1pii_A          118 IDPYQIYL-ARYYQADACL---LMLSVLDDDQYRQLAAVAHSLEMGVLTE--VSNEEEQERAIALGAKVVGINNRDLRDL  191 (452)
T ss_dssp             CSHHHHHH-HHHTTCSEEE---EETTTCCHHHHHHHHHHHHHTTCEEEEE--ECSHHHHHHHHHTTCSEEEEESEETTTT
T ss_pred             CCHHHHHH-HHHcCCCEEE---EEcccCCHHHHHHHHHHHHHcCCeEEEE--eCCHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence            36775544 6678988433   334422   2344555556667666655  45 5889999999999888877665544


Q ss_pred             CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEE-eecCCccccCCCCHH
Q 021156          169 QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLV-HGVDVEGKKLGIDDE  247 (316)
Q Consensus       169 ~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilv-tdi~~dG~~~G~d~e  247 (316)
                      +.+.+...++....+++.++++=                   +++..-+.++++.+. ++.+++ +.+.     +..|..
T Consensus       192 ~~dl~~~~~L~~~ip~~~~vIaE-------------------sGI~t~edv~~~~~~-a~avLVGealm-----r~~d~~  246 (452)
T 1pii_A          192 SIDLNRTRELAPKLGHNVTVISE-------------------SGINTYAQVRELSHF-ANGFLIGSALM-----AHDDLH  246 (452)
T ss_dssp             EECTHHHHHHHHHHCTTSEEEEE-------------------SCCCCHHHHHHHTTT-CSEEEECHHHH-----TCSCHH
T ss_pred             CCCHHHHHHHHHhCCCCCeEEEE-------------------CCCCCHHHHHHHHHh-CCEEEEcHHHc-----CCcCHH
Confidence            45688999999888655444332                   223444778888888 999987 3332     334443


Q ss_pred             -HHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhcc---CcccHHHHHHHHHh
Q 021156          248 -LVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFG---GNLAYKDVVAWHAQ  309 (316)
Q Consensus       248 -li~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~---g~~~~~~~~~~~~~  309 (316)
                       .++++... .  += -.|+++++|+..+.++|++.-|.|    +  |.   +.++++++.++.+.
T Consensus       247 ~~~~~l~~~-~--~K-ICGit~~eda~~a~~~Gad~iGfI----f--~~~SpR~V~~~~a~~i~~~  302 (452)
T 1pii_A          247 AAVRRVLLG-E--NK-VCGLTRGQDAKAAYDAGAIYGGLI----F--VATSPRCVNVEQAQEVMAA  302 (452)
T ss_dssp             HHHHHHHHC-S--CE-ECCCCSHHHHHHHHHHTCSEEEEE----C--CTTCTTBCCHHHHHHHHHH
T ss_pred             HHHHHHHHH-h--cc-ccCCCcHHHHHHHHhcCCCEEEee----c--CCCCCCCCCHHHHHHHHhc
Confidence             56666532 1  22 247999999999999994443444    3  32   45788888776554

>3tcs_A Racemase, putative; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, TIM barrel; HET: PG4; 1.88A {Roseobacter denitrificans} PDB: 3u4f_A 3t9p_A 3t8q_A

Probab=94.94  E-value=0.14  Score=48.79  Aligned_cols=137  Identities=14%  Similarity=-0.046  Sum_probs=92.0

Q ss_pred             HHcCCCEE--EeCCeeecC----CCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHH
Q 021156          151 IEEGATHV--IVTSYVFNN----GQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLA  224 (316)
Q Consensus       151 l~~Gad~V--Vigt~~~~~----~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~  224 (316)
                      .+.|...+  =+|.....+    +..+.+.++.+.+.+|+ .+-+.+|+.          .+|...   +..++++.+.+
T Consensus       159 ~~~Gf~~~K~KvG~~~~~d~~~~~~~~~~~v~avReavG~-d~~l~vDaN----------~~~~~~---~A~~~~~~l~~  224 (388)
T 3tcs_A          159 DTQGFTAFKVRAGAEVGRNRDEWPGRTEEIIPTMRRELGD-DVDLLIDAN----------SCYTPD---RAIEVGHMLQD  224 (388)
T ss_dssp             HHHCCCEEEEECSCTTCTTCCSSTTHHHHHHHHHHHHHCS-SSEEEEECT----------TCCCHH---HHHHHHHHHHH
T ss_pred             HhcCCCEEEEccCCCcccccccchhHHHHHHHHHHHHhCC-CCeEEEeCC----------CCcCHH---HHHHHHHHHhh
Confidence            36787754  345432111    00124678888888984 456788873          356532   45678899999


Q ss_pred             cCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHH
Q 021156          225 SYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVV  304 (316)
Q Consensus       225 ~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~  304 (316)
                      .++..+       +.-..--|++.++++++.+++||.+..-+.+..|+.++++.+ .++.+.+--+-  .+|-....++.
T Consensus       225 ~~i~~i-------EeP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~-a~d~v~~d~~~--~GGit~a~kia  294 (388)
T 3tcs_A          225 HGFCHF-------EEPCPYWELAQTKQVTDALDIDVTGGEQDCDLPTWQRMIDMR-AVDIVQPDILY--LGGICRTLRVV  294 (388)
T ss_dssp             TTCCEE-------ECCSCTTCHHHHHHHHHHCSSCEEECTTCCCHHHHHHHHHHT-CCSEECCCHHH--HTSHHHHHHHH
T ss_pred             cCCeEE-------ECCCCccCHHHHHHHHHhcCCCEEcCCccCCHHHHHHHHHcC-CCCEEEeCccc--cCCHHHHHHHH
Confidence            888744       111122389999999999999999999999999999999988 36766666555  56655556666


Q ss_pred             HHHHhhc
Q 021156          305 AWHAQQE  311 (316)
Q Consensus       305 ~~~~~~~  311 (316)
                      ++++++.
T Consensus       295 ~~A~~~g  301 (388)
T 3tcs_A          295 EMARAAG  301 (388)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHcC
Confidence            6665543

>1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus}

Probab=94.94  E-value=0.19  Score=46.80  Aligned_cols=179  Identities=16%  Similarity=0.044  Sum_probs=106.4

Q ss_pred             CHHHHHHHHHHcCCCcceEEEec-C----C-----cccHHHHH----HHHHhC-CCcEEEec-----CC-CH-HHHHHHH
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLG-A----D-----PLSKAAAI----EALHAY-PGGLQVGG-----GI-NS-DNSLSYI  151 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLd-a----~-----~~~~~~i~----~~v~~~-~~pl~vGG-----GI-r~-e~~~~~l  151 (316)
                      |+. .|+...++|++.+++=|.. +    +     .....++.    .+.+.+ +.||+++.     +. +. +.++++.
T Consensus        48 D~~-sA~i~e~aGfdai~vs~~~~a~~~lG~pD~~~vt~~em~~~~~~I~r~~~~~PviaD~d~Gyg~~~~v~~tv~~l~  126 (318)
T 1zlp_A           48 DAL-SAAVVEKTGFHAAFVSGYSVSAAMLGLPDFGLLTTTEVVEATRRITAAAPNLCVVVDGDTGGGGPLNVQRFIRELI  126 (318)
T ss_dssp             SHH-HHHHHHHTTCSEEEECHHHHHHHHHCCCSSSCSCHHHHHHHHHHHHHHSSSSEEEEECTTCSSSHHHHHHHHHHHH
T ss_pred             CHH-HHHHHHHcCCCEEEECcHHHhhHhcCCCCCCCCCHHHHHHHHHHHHhhccCCCEEEeCCCCCCCHHHHHHHHHHHH
Confidence            566 7888888999988887742 1    1     11233333    333456 89999874     22 22 6688999


Q ss_pred             HcCCCEEEe-CCeeecC-----C-CC-CH-HHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH
Q 021156          152 EEGATHVIV-TSYVFNN-----G-QM-DL-ERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF  222 (316)
Q Consensus       152 ~~Gad~VVi-gt~~~~~-----~-~~-~~-eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~  222 (316)
                      ++||.-|-| |....+.     | ++ +. +.++++....- .++  .-|++.     .-++.......-.+.++.++.+
T Consensus       127 ~aGaagv~iED~~~~k~cgH~~gk~L~p~~e~~~rI~Aa~~-A~~--~~~~~I-----~ARtda~a~~gl~~ai~Ra~Ay  198 (318)
T 1zlp_A          127 SAGAKGVFLEDQVWPKKCGHMRGKAVVPAEEHALKIAAARE-AIG--DSDFFL-----VARTDARAPHGLEEGIRRANLY  198 (318)
T ss_dssp             HTTCCEEEEECBCSSCCCSSSSCCCBCCHHHHHHHHHHHHH-HHT--TSCCEE-----EEEECTHHHHHHHHHHHHHHHH
T ss_pred             HcCCcEEEECCCCCCccccCCCCCccCCHHHHHHHHHHHHH-hcc--cCCcEE-----EEeeHHhhhcCHHHHHHHHHHH
Confidence            999999887 3321110     1 11 12 33334332220 000  011110     0122211100001478889999


Q ss_pred             HHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEE---eCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          223 LASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYA---GGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       223 ~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIas---GGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      .+.|++.|++..+        ++.+.++++.+.+++|+.++   ||-...-+..+|.++|  +.-|+.|.++
T Consensus       199 ~eAGAd~i~~e~~--------~~~e~~~~i~~~l~~P~lan~~~~g~~~~~~~~eL~~lG--v~~v~~~~~~  260 (318)
T 1zlp_A          199 KEAGADATFVEAP--------ANVDELKEVSAKTKGLRIANMIEGGKTPLHTPEEFKEMG--FHLIAHSLTA  260 (318)
T ss_dssp             HHTTCSEEEECCC--------CSHHHHHHHHHHSCSEEEEEECTTSSSCCCCHHHHHHHT--CCEEEECSHH
T ss_pred             HHcCCCEEEEcCC--------CCHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHHHHHcC--CeEEEEchHH
Confidence            9999999887654        46789999999899999543   4433334577888898  8899999877

>4gbu_A NADPH dehydrogenase 1; alpha/beta barrel, enenone reductase, alkene reductase, NADP oxidoreductase, carvone, enenatioselectivity; HET: 0WV 1PE FMN; 1.18A {Saccharomyces pastorianus} PDB: 4ge8_A* 1oya_A* 1oyb_A* 1oyc_A* 3tx9_A* 3rnd_A* 1k02_A* 1k03_A* 1bwk_A* 1bwl_A*

Probab=94.93  E-value=0.031  Score=53.67  Aligned_cols=147  Identities=18%  Similarity=0.118  Sum_probs=82.3

Q ss_pred             HHHHHHHcCCCEEEeCCe--------------eecC---C------CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEE
Q 021156          146 NSLSYIEEGATHVIVTSY--------------VFNN---G------QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAI  202 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~--------------~~~~---~------~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v  202 (316)
                      .++++.++|+|-|=|-.+              .++|   |      ++..|.++.+.+.+|++.|.+-+...  +.    
T Consensus       177 AA~rA~~AGFDgVEIH~AhGYLl~QFLSp~tN~RtDeYGGS~ENR~Rf~lEVi~aVr~~vg~d~vgvRlS~~--~~----  250 (400)
T 4gbu_A          177 AAKNSIAAGADGVEIHSANGYLLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEAIGHEKVGLRLSPY--GV----  250 (400)
T ss_dssp             HHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECTT--CC----
T ss_pred             HHHHHHhcCcCeeeecccccchHHheecCcCCCCccccCCcHHHHHHHHHHHHHHHHHHcCCCcEEEEeccc--cc----
Confidence            466677899999987321              1122   1      34568899999999988765444321  00    


Q ss_pred             EeCCcceeccc---CHHHHHHHHHHcC---CCEEEEeecCCc----------cccCCCCHHHHHHHhhcCCCcEEEEeCC
Q 021156          203 VTDRWQKFSDV---YLDERVLDFLASY---ADEFLVHGVDVE----------GKKLGIDDELVALLGKYSPIPVTYAGGV  266 (316)
Q Consensus       203 ~~~gw~~~~~~---~~~e~a~~~~~~G---a~~ilvtdi~~d----------G~~~G~d~eli~~l~~~~~iPVIasGGI  266 (316)
                      .-.++......   ...+.+..+...+   ...-.+|-....          +...+.   ..+.+++.+++|||+.||+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ir~~~~~pvi~~G~~  327 (400)
T 4gbu_A          251 FNSMSGGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGG---SNDFVYSIWKGPVIRAGNF  327 (400)
T ss_dssp             TTTCCGGGSTTHHHHHHHHHHHHHHHHHTTCCCSEEEEECTTCSSTTSCTTTTCCCSC---CSTHHHHHCCSCEEEESSC
T ss_pred             cCCCCccchhhhHHHHHHHHHHHHHhhccCccccceeeecccCCCcccccccchhhhH---HHHHHHHHhCCCEEEeCCC
Confidence            00111110111   1233444444432   221112222111          111222   2233555678999999999


Q ss_pred             CCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHH
Q 021156          267 TTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVV  304 (316)
Q Consensus       267 ~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~  304 (316)
                      .+.+++.+.+..+ +++-|.+||++  ..+|-..+.+.
T Consensus       328 ~~~~~~~~~~~~~-~aDlV~~gR~~--iadPdl~~k~~  362 (400)
T 4gbu_A          328 ALHPEVVREEVKD-KRTLIGYGRFF--ISNPDLVDRLE  362 (400)
T ss_dssp             TTCHHHHHHHTTS-TTEEEECCHHH--HHCTTHHHHHH
T ss_pred             CChHHHHHHHHcC-CCeEhHHHHHH--HHCcHHHHHHH
Confidence            9888887777666 58999999999  88885555543

>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}

Probab=94.90  E-value=0.012  Score=51.72  Aligned_cols=44  Identities=20%  Similarity=0.339  Sum_probs=36.7

Q ss_pred             HHHHHHHhC--CCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecC
Q 021156          124 AAIEALHAY--PGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNN  167 (316)
Q Consensus       124 ~i~~~v~~~--~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~  167 (316)
                      .+.+.++..  ++|+.+||||+ .++++.+...|+|-+++|++..+.
T Consensus       159 ~~~~~ir~~~~~~~ii~ggGI~~~~~~~~~~~~gaDgvlVGsAi~~~  205 (219)
T 2h6r_A          159 GTVRAVKEINKDVKVLCGAGISKGEDVKAALDLGAEGVLLASGVVKA  205 (219)
T ss_dssp             HHHHHHHHHCTTCEEEECSSCCSHHHHHHHHTTTCCCEEESHHHHTC
T ss_pred             HHHHHHHhccCCCeEEEEeCcCcHHHHHHHhhCCCCEEEEcHHHhCc
Confidence            455555543  68999999999 599999999999999999999873

>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*

Probab=94.78  E-value=0.053  Score=51.52  Aligned_cols=41  Identities=24%  Similarity=0.152  Sum_probs=33.7

Q ss_pred             HHHHHhC-CCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeeec
Q 021156          126 IEALHAY-PGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus       126 ~~~v~~~-~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      .++.+.+ .+|++..|||++ +|+.+++.+||+.|.+|+.++.
T Consensus       259 ~~v~~~~~~ipvia~GGI~~~~d~~kal~lGA~~v~ig~~~l~  301 (368)
T 3vkj_A          259 MEVRYSVPDSFLVGSGGIRSGLDAAKAIALGADIAGMALPVLK  301 (368)
T ss_dssp             HHHHHHSTTCEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHH
T ss_pred             HHHHHHcCCCcEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHH
Confidence            3333445 499999999995 9999999999999999997763

>3go2_A Putative L-alanine-DL-glutamate epimerase; structural genomics, isomerase, PSI-2; 1.70A {Burkholderia xenovorans} PDB: 2oo6_A 3sn0_A 3sn1_A* 3sn4_A*

Probab=94.73  E-value=0.18  Score=48.32  Aligned_cols=112  Identities=12%  Similarity=0.056  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHH
Q 021156          172 LERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVAL  251 (316)
Q Consensus       172 ~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~  251 (316)
                      .+.++.+.+.+|+ .+.+.+|+.          .+|...   +..++++.+.+.|+..+  . .-      -.|++.+++
T Consensus       200 ~e~v~avR~avG~-d~~l~vDaN----------~~~~~~---~A~~~~~~L~~~~i~~i--E-~P------~~d~~~~~~  256 (409)
T 3go2_A          200 RAHLEALRDGAGP-DVEILLDLN----------FNAKPE---GYLKILRELADFDLFWV--E-ID------SYSPQGLAY  256 (409)
T ss_dssp             HHHHHHHHHHHCT-TSEEEEECT----------TCSCHH---HHHHHHHHTTTSCCSEE--E-CC------CSCHHHHHH
T ss_pred             HHHHHHHHHHhCC-CCEEEEECC----------CCCCHH---HHHHHHHHHhhcCCeEE--E-eC------cCCHHHHHH
Confidence            4788889899985 456778873          356432   35677888888887744  2 11      138999999


Q ss_pred             HhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHHhh
Q 021156          252 LGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQQ  310 (316)
Q Consensus       252 l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~~~  310 (316)
                      +++.+++||.+.+.+.+.+++.++++.+ .++.+.+- ..  .+|-....++.++++++
T Consensus       257 l~~~~~iPIa~dE~~~~~~~~~~~i~~~-~~d~v~~k-~~--~GGit~~~~ia~~A~~~  311 (409)
T 3go2_A          257 VRNHSPHPISSCETLFGIREFKPFFDAN-AVDVAIVD-TI--WNGVWQSMKIAAFADAH  311 (409)
T ss_dssp             HHHTCSSCEEECTTCCHHHHHHHHHHTT-CCSEEEEC-HH--HHCHHHHHHHHHHHHHT
T ss_pred             HHhhCCCCEEeCCCcCCHHHHHHHHHhC-CCCEEEeC-CC--CCCHHHHHHHHHHHHHc
Confidence            9999999999999999999999999998 35555443 34  34433344555555543

>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*

Probab=94.72  E-value=0.053  Score=51.23  Aligned_cols=75  Identities=13%  Similarity=0.116  Sum_probs=53.2

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCC-----c----------ccHHHHHHHH-HhCCCcEEEecCCC-HHHHHHHHHcCCC
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGAD-----P----------LSKAAAIEAL-HAYPGGLQVGGGIN-SDNSLSYIEEGAT  156 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~-----~----------~~~~~i~~~v-~~~~~pl~vGGGIr-~e~~~~~l~~Gad  156 (316)
                      ++. .|+...+.|++.+.+.--.++     .          ......++.+ +.+++|+++.|||+ .+++.+++..||+
T Consensus       154 t~~-~a~~a~~~GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~~iPViaaGGI~~~~~~~~~l~~GAd  232 (369)
T 3bw2_A          154 TPE-EARAVEAAGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAVDIPVVAAGGIMRGGQIAAVLAAGAD  232 (369)
T ss_dssp             SHH-HHHHHHHTTCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHTTCS
T ss_pred             CHH-HHHHHHHcCCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHhcCceEEEECCCCCHHHHHHHHHcCCC
Confidence            555 467777889987766322211     0          1213333334 45789999999996 6999999999999


Q ss_pred             EEEeCCeeecCCC
Q 021156          157 HVIVTSYVFNNGQ  169 (316)
Q Consensus       157 ~VVigt~~~~~~~  169 (316)
                      .|.+||.++.+++
T Consensus       233 ~V~vGs~~~~~~e  245 (369)
T 3bw2_A          233 AAQLGTAFLATDE  245 (369)
T ss_dssp             EEEESHHHHTSTT
T ss_pred             EEEEChHHhCCcc
Confidence            9999999988743

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=94.66  E-value=0.049  Score=53.46  Aligned_cols=70  Identities=21%  Similarity=0.227  Sum_probs=49.7

Q ss_pred             HHHHHHHHcCCCcceEEEecCC------------cccHHHH---HHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEe
Q 021156           97 EFANLYKEDGLTGGHAIMLGAD------------PLSKAAA---IEALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIV  160 (316)
Q Consensus        97 e~a~~~~~~G~~~l~lvDLda~------------~~~~~~i---~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVi  160 (316)
                      +.|+.+.++|++.+.+ -..++            .+....+   .+.++..++|++..|||+ .+|+.+++.+||+.|.+
T Consensus       290 e~a~~l~~~G~d~I~v-~~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ipvia~GGI~~~~di~kala~GAd~V~i  368 (494)
T 1vrd_A          290 EGTEALIKAGADAVKV-GVGPGSICTTRVVAGVGVPQLTAVMECSEVARKYDVPIIADGGIRYSGDIVKALAAGAESVMV  368 (494)
T ss_dssp             HHHHHHHHTTCSEEEE-CSSCSTTCHHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred             HHHHHHHHcCCCEEEE-cCCCCccccccccCCCCccHHHHHHHHHHHHhhcCCCEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence            3567777889887766 22211            1222222   222334689999999998 59999999999999999


Q ss_pred             CCeeecC
Q 021156          161 TSYVFNN  167 (316)
Q Consensus       161 gt~~~~~  167 (316)
                      |+.+..+
T Consensus       369 Gr~~l~~  375 (494)
T 1vrd_A          369 GSIFAGT  375 (494)
T ss_dssp             SHHHHTB
T ss_pred             CHHHhcC
Confidence            9998775

>4hpn_A Putative uncharacterized protein; enolase, enzyme function initiative, EFI, structural genomic isomerase; 1.60A {Agrobacterium tumefaciens} PDB: 4ggb_A

Probab=94.64  E-value=0.2  Score=47.24  Aligned_cols=136  Identities=13%  Similarity=0.006  Sum_probs=91.9

Q ss_pred             HHHHHHcCCCE--EEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHH
Q 021156          147 SLSYIEEGATH--VIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLA  224 (316)
Q Consensus       147 ~~~~l~~Gad~--VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~  224 (316)
                      +..+.+.|...  +=+|....++    .+.++.+.+.+|+ .+-+.+|+   |+       +|...   +..++++.+.+
T Consensus       152 ~~~~~~~Gf~~~K~k~g~~~~~d----i~~v~avr~~~g~-~~~l~vDa---N~-------~~~~~---~A~~~~~~l~~  213 (378)
T 4hpn_A          152 MAERRAEGFHACKIKIGFGVEED----LRVIAAVREAIGP-DMRLMIDA---NH-------GYTVT---EAITLGDRAAG  213 (378)
T ss_dssp             HHHHHHTTCSEEEEECCSCHHHH----HHHHHHHHHHHTT-TSEEEEEC---TT-------CCCHH---HHHHHHHHHGG
T ss_pred             HHHHHHhccceecccccCChHHH----HHHHHHHHHhcCC-cEEEEEec---Cc-------ccCHH---HHHHHHhhhhh
Confidence            45556778874  4456544444    7889999999974 56788897   33       56432   35677888888


Q ss_pred             cCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHH
Q 021156          225 SYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVV  304 (316)
Q Consensus       225 ~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~  304 (316)
                      .++..+       +.=....|++.++++++.+++||.+.=-+.+..|+.++++.+ .++.+.+--+-  .+|-....++.
T Consensus       214 ~~i~~i-------EeP~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~-a~d~i~~d~~~--~GGit~~~~ia  283 (378)
T 4hpn_A          214 FGIDWF-------EEPVVPEQLDAYARVRAGQPIPVAGGETWHGRYGMWQALSAG-AVDILQPDLCG--CGGFSEIQKIA  283 (378)
T ss_dssp             GCCSCE-------ECCSCTTCHHHHHHHHHHSSSCEEECTTCCHHHHHHHHHHTT-CCSEECCBTTT--TTHHHHHHHHH
T ss_pred             cccchh-------hcCCCccchhhhHHHHhhCCceeeCCcCccchHhHHHHHHcC-CCCEEeeCCee--CCChhHHHHHH
Confidence            776532       111223489999999999999998888899999999999988 35555554444  44544455555


Q ss_pred             HHHHhh
Q 021156          305 AWHAQQ  310 (316)
Q Consensus       305 ~~~~~~  310 (316)
                      ++++++
T Consensus       284 ~~A~~~  289 (378)
T 4hpn_A          284 TLATLH  289 (378)
T ss_dssp             HHHHHH
T ss_pred             HHHHHc
Confidence            555554

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=94.44  E-value=0.062  Score=53.38  Aligned_cols=70  Identities=17%  Similarity=0.108  Sum_probs=49.4

Q ss_pred             HHHHHHHHcCCCcceEEEecCC-----------cccHHHHHHHH---HhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeC
Q 021156           97 EFANLYKEDGLTGGHAIMLGAD-----------PLSKAAAIEAL---HAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVT  161 (316)
Q Consensus        97 e~a~~~~~~G~~~l~lvDLda~-----------~~~~~~i~~~v---~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVig  161 (316)
                      +.|+.+.++|++.+.+=-=.+.           -+....+.++.   +..++||+.+|||+ +.|+-+++.+|||.|.+|
T Consensus       334 e~a~~Li~aGAD~vkVGiGpGSiCtTr~v~GvG~PQ~tAi~~~a~~a~~~~vpvIADGGI~~sGDi~KAlaaGAd~VMlG  413 (556)
T 4af0_A          334 EQAAQLIAAGADGLRIGMGSGSICITQEVMAVGRPQGTAVYAVAEFASRFGIPCIADGGIGNIGHIAKALALGASAVMMG  413 (556)
T ss_dssp             HHHHHHHHHTCSEEEECSSCSTTBCCTTTCCSCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred             HHHHHHHHcCCCEEeecCCCCcccccccccCCCCcHHHHHHHHHHHHHHcCCCEEecCCcCcchHHHHHhhcCCCEEEEc
Confidence            5777777888876543111110           12234454544   35789999999999 799999999999999999


Q ss_pred             Ceeec
Q 021156          162 SYVFN  166 (316)
Q Consensus       162 t~~~~  166 (316)
                      +.+-.
T Consensus       414 sllAG  418 (556)
T 4af0_A          414 GLLAG  418 (556)
T ss_dssp             TTTTT
T ss_pred             hhhcc
Confidence            97754

>4hnl_A Mandelate racemase/muconate lactonizing enzyme; dehydratase, magnesium binding, enzyme function initiative,; 1.48A {Enterococcus gallinarum EG2} PDB: 3s47_A

Probab=94.39  E-value=0.12  Score=49.58  Aligned_cols=143  Identities=8%  Similarity=-0.036  Sum_probs=94.3

Q ss_pred             HHHHHHHHcCCCEE--EeCCeeec--------------------CCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEE
Q 021156          145 DNSLSYIEEGATHV--IVTSYVFN--------------------NGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAI  202 (316)
Q Consensus       145 e~~~~~l~~Gad~V--Vigt~~~~--------------------~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v  202 (316)
                      ++++++.+.|...+  -+|.....                    +.+.+.+.++.+.+.+| ..+-+.+|+.   +    
T Consensus       159 ~~a~~~~~~G~~~~K~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~v~avR~a~G-~~~~l~vDan---~----  230 (421)
T 4hnl_A          159 HEIDRFLAAGYRYIRCQLGFYGGNPSQLQTPEEPISGSYFDQTDYMETTLKMFAAIKEKYG-NQFQMLHDVH---E----  230 (421)
T ss_dssp             HHHHHHHHTTCSEEEEEESCCCCCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHT-TSSEEEEECT---T----
T ss_pred             HHHHHHHHhhHHHHhhccccccCCchhccccccccccccccchhHHHHHHHHHHHHHHHhC-CCceEecccc---c----
Confidence            55788888998754  34431100                    00013678888889997 4567888873   3    


Q ss_pred             EeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCc
Q 021156          203 VTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGR  282 (316)
Q Consensus       203 ~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~  282 (316)
                         +|...   +..++++.+++.++..+  =+     -...-|++.++++++.+++||.+.--+.+..|++++++.+ .+
T Consensus       231 ---~~~~~---~A~~~~~~l~~~~i~~i--Ee-----P~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~-a~  296 (421)
T 4hnl_A          231 ---RLHPN---QAIQFAKAAEPYQLFFL--ED-----ILPPDQSHWLTQLRSQSATPIATGELFNNPMEWQELVKNR-QI  296 (421)
T ss_dssp             ---CSCHH---HHHHHHHHHGGGCCSEE--EC-----CSCGGGGGGHHHHHTTCCCCEEECTTCCSGGGTHHHHHTT-CC
T ss_pred             ---cCCHH---HHHHHHHHhhhhhhccc--cc-----CCcccchHHHHHHHhcCCCCeecCcceehhHHHHHHHhcC-Cc
Confidence               46432   35678888888887753  11     1122378889999999999999999999999999999998 36


Q ss_pred             CEEEEccchhhccCcccHHHHHHHHHhhc
Q 021156          283 VDVTVGSALDIFGGNLAYKDVVAWHAQQE  311 (316)
Q Consensus       283 ~gVivG~Al~~~~g~~~~~~~~~~~~~~~  311 (316)
                      +.+.+--.-  .+|-....++.++++++.
T Consensus       297 d~v~~d~~~--~GGite~~~ia~~A~~~g  323 (421)
T 4hnl_A          297 DFMRAHVSQ--IGGITPALKLAHFCDAMG  323 (421)
T ss_dssp             SEECCCGGG--GTSHHHHHHHHHHHHHTT
T ss_pred             eEEEeCCCC--CCCHHHHHHHHHHHHHCC
Confidence            655555444  445444555555555543

>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}

Probab=94.37  E-value=0.21  Score=46.53  Aligned_cols=63  Identities=16%  Similarity=0.243  Sum_probs=49.6

Q ss_pred             HHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          217 ERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       217 e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      +.++++.+.|++.|.+-.         ++.+.+++..+..  ++++.+||||. .+.+.++.+.|  ++.+.+|+..
T Consensus       242 dea~eAl~aGaD~I~LDn---------~~~~~l~~av~~l~~~v~ieaSGGIt-~~~I~~~a~tG--VD~isvGalt  306 (320)
T 3paj_A          242 AELEEAISAGADIIMLDN---------FSLEMMREAVKINAGRAALENSGNIT-LDNLKECAETG--VDYISVGALT  306 (320)
T ss_dssp             HHHHHHHHTTCSEEEEES---------CCHHHHHHHHHHHTTSSEEEEESSCC-HHHHHHHHTTT--CSEEECTHHH
T ss_pred             HHHHHHHHcCCCEEEECC---------CCHHHHHHHHHHhCCCCeEEEECCCC-HHHHHHHHHcC--CCEEEECcee
Confidence            567778889999877643         3556667765543  68999999996 78899999988  9999999876

>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1

Probab=94.29  E-value=0.7  Score=40.63  Aligned_cols=125  Identities=17%  Similarity=0.111  Sum_probs=85.0

Q ss_pred             HHHHHHHhCC-CcEEEecCCC-H-HHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCee
Q 021156          124 AAIEALHAYP-GGLQVGGGIN-S-DNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKY  200 (316)
Q Consensus       124 ~i~~~v~~~~-~pl~vGGGIr-~-e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~  200 (316)
                      .+.+.+++.+ +|+..+--.+ . +-++.+++.|++.+-+.......    .+.++++.++|+ + +.+..+.-      
T Consensus         9 ~~~~~l~~~~ii~vir~~~~~~~~~~~~al~~gGv~~iel~~k~~~~----~~~i~~l~~~~~-~-l~vgaGtv------   76 (224)
T 1vhc_A            9 QIIEKLRELKIVPVIALDNADDILPLADTLAKNGLSVAEITFRSEAA----ADAIRLLRANRP-D-FLIAAGTV------   76 (224)
T ss_dssp             HHHHHHHHHCEEEEECCSSGGGHHHHHHHHHHTTCCEEEEETTSTTH----HHHHHHHHHHCT-T-CEEEEESC------
T ss_pred             HHHHHHHHCCeEEEEeCCCHHHHHHHHHHHHHcCCCEEEEeccCchH----HHHHHHHHHhCc-C-cEEeeCcE------
Confidence            3445555433 5777775554 3 56889999999998886433222    678888999884 3 33333321      


Q ss_pred             EEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCC
Q 021156          201 AIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGI  280 (316)
Q Consensus       201 ~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~  280 (316)
                                  + ..+.++.+.+.|++.+.  .       .+.|.+.++..++ .++|++.  |+.|++++.++.+.| 
T Consensus        77 ------------l-~~d~~~~A~~aGAd~v~--~-------p~~d~~v~~~ar~-~g~~~i~--Gv~t~~e~~~A~~~G-  130 (224)
T 1vhc_A           77 ------------L-TAEQVVLAKSSGADFVV--T-------PGLNPKIVKLCQD-LNFPITP--GVNNPMAIEIALEMG-  130 (224)
T ss_dssp             ------------C-SHHHHHHHHHHTCSEEE--C-------SSCCHHHHHHHHH-TTCCEEC--EECSHHHHHHHHHTT-
T ss_pred             ------------e-eHHHHHHHHHCCCCEEE--E-------CCCCHHHHHHHHH-hCCCEEe--ccCCHHHHHHHHHCC-
Confidence                        1 12678888899999772  1       1246777776666 6778877  399999999999998 


Q ss_pred             CcCEEEE
Q 021156          281 GRVDVTV  287 (316)
Q Consensus       281 g~~gViv  287 (316)
                       ++.+.+
T Consensus       131 -ad~vk~  136 (224)
T 1vhc_A          131 -ISAVKF  136 (224)
T ss_dssp             -CCEEEE
T ss_pred             -CCEEEE
Confidence             777766

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=94.15  E-value=0.071  Score=52.17  Aligned_cols=70  Identities=20%  Similarity=0.120  Sum_probs=56.1

Q ss_pred             CHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcC-CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEcc
Q 021156          214 YLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYS-PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGS  289 (316)
Q Consensus       214 ~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~-~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~  289 (316)
                      ...+.++.+.+.|++.++++..  .|. .+..++.++++++.+ ++|++ .|++.+.+++.++.++|  ++++.+|.
T Consensus       233 ~~~~~a~~l~~~G~d~ivi~~a--~g~-~~~~~~~i~~l~~~~p~~pvi-~G~v~t~~~a~~~~~~G--ad~I~vg~  303 (491)
T 1zfj_A          233 DTFERAEALFEAGADAIVIDTA--HGH-SAGVLRKIAEIRAHFPNRTLI-AGNIATAEGARALYDAG--VDVVKVGI  303 (491)
T ss_dssp             THHHHHHHHHHHTCSEEEECCS--CTT-CHHHHHHHHHHHHHCSSSCEE-EEEECSHHHHHHHHHTT--CSEEEECS
T ss_pred             hHHHHHHHHHHcCCCeEEEeee--cCc-chhHHHHHHHHHHHCCCCcEe-CCCccCHHHHHHHHHcC--CCEEEECc
Confidence            3568899999999999887652  222 222467888888876 89998 88999999999999998  89999884

>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}

Probab=94.14  E-value=2.3  Score=38.55  Aligned_cols=201  Identities=11%  Similarity=-0.001  Sum_probs=110.0

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCCc--c---cHHHHHHHHHh-CCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeee-
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGADP--L---SKAAAIEALHA-YPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVF-  165 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~~--~---~~~~i~~~v~~-~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~-  165 (316)
                      .+-+++++.+.+.|++.+-+.-....+  +   ...++.+.+++ .++|+.+=. -+.+++++++++|++.|-+....- 
T Consensus        26 e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~~~~~~e~~~~i~~~~~~~v~~l~-~n~~~i~~a~~~G~~~V~i~~~~S~  104 (295)
T 1ydn_A           26 ADKIALINRLSDCGYARIEATSFVSPKWVPQLADSREVMAGIRRADGVRYSVLV-PNMKGYEAAAAAHADEIAVFISASE  104 (295)
T ss_dssp             HHHHHHHHHHTTTTCSEEEEEECSCTTTCGGGTTHHHHHHHSCCCSSSEEEEEC-SSHHHHHHHHHTTCSEEEEEEESCH
T ss_pred             HHHHHHHHHHHHcCcCEEEEccCcCccccccccCHHHHHHHHHhCCCCEEEEEe-CCHHHHHHHHHCCCCEEEEEEecCH
Confidence            355677888888888766665443322  1   23334343333 256665443 346899999999999887752110 


Q ss_pred             --------cCCCCCHHHHHHHHH---HhcCceEEEeeeeeecCCeeEEEe-CCcceecccCHHHHHHHHHHcCCCEEEEe
Q 021156          166 --------NNGQMDLERLKDLVR---VVGKQRLVLDLSCRKKDGKYAIVT-DRWQKFSDVYLDERVLDFLASYADEFLVH  233 (316)
Q Consensus       166 --------~~~~~~~eli~ei~~---~~G~~~IvvslD~k~~~g~~~v~~-~gw~~~~~~~~~e~a~~~~~~Ga~~ilvt  233 (316)
                              .+.+-+.+.+.++++   ..| -.+...+-.-       ... .+.. ...-.+.++++.+.+.|++.+-+-
T Consensus       105 ~h~~~~~~~~~~e~~~~~~~~v~~a~~~G-~~V~~~l~~~-------~~~e~~~~-~~~~~~~~~~~~~~~~G~d~i~l~  175 (295)
T 1ydn_A          105 GFSKANINCTIAESIERLSPVIGAAINDG-LAIRGYVSCV-------VECPYDGP-VTPQAVASVTEQLFSLGCHEVSLG  175 (295)
T ss_dssp             HHHHHHTSSCHHHHHHHHHHHHHHHHHTT-CEEEEEEECS-------SEETTTEE-CCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHcC-CeEEEEEEEE-------ecCCcCCC-CCHHHHHHHHHHHHhcCCCEEEec
Confidence                    000001334433333   344 1222112110       000 0011 111235677788889999998776


Q ss_pred             ecCCccccCCC-CHHHHHHHhhcCC-CcEEEEe----CCCCHHHHHHHHHhCCCcCEEEEccchhhc---------cCcc
Q 021156          234 GVDVEGKKLGI-DDELVALLGKYSP-IPVTYAG----GVTTMADLEKIKVAGIGRVDVTVGSALDIF---------GGNL  298 (316)
Q Consensus       234 di~~dG~~~G~-d~eli~~l~~~~~-iPVIasG----GI~s~eDi~~l~~~G~g~~gVivG~Al~~~---------~g~~  298 (316)
                      |  ..|..... ..++++.+++.++ +|+-.-|    |... .......+.|  +..+=+.-.=  +         .|+.
T Consensus       176 D--t~G~~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla~-an~l~Ai~aG--~~~vd~sv~G--lG~cp~a~g~~GN~  248 (295)
T 1ydn_A          176 D--TIGRGTPDTVAAMLDAVLAIAPAHSLAGHYHDTGGRAL-DNIRVSLEKG--LRVFDASVGG--LGGCPFAPGAKGNV  248 (295)
T ss_dssp             E--TTSCCCHHHHHHHHHHHHTTSCGGGEEEEEBCTTSCHH-HHHHHHHHHT--CCEEEEBTTC--CSCBTTBTTSCCBC
T ss_pred             C--CCCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCcchHH-HHHHHHHHhC--CCEEEecccc--CCCCCCCCCCcCCh
Confidence            5  44664433 5678889988776 8887766    3333 3456666778  5443332111  1         3678


Q ss_pred             cHHHHHHHHHhh
Q 021156          299 AYKDVVAWHAQQ  310 (316)
Q Consensus       299 ~~~~~~~~~~~~  310 (316)
                      ..++++..++..
T Consensus       249 ~~e~lv~~l~~~  260 (295)
T 1ydn_A          249 DTVAVVEMLHEM  260 (295)
T ss_dssp             BHHHHHHHHHHT
T ss_pred             hHHHHHHHHHhc
Confidence            899988877653

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=93.96  E-value=0.04  Score=56.73  Aligned_cols=84  Identities=6%  Similarity=0.001  Sum_probs=62.6

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecC-------Ccc------cHHHHHHHHH-hCCCcEEEecCCC-HHHHHHHHHcC-CC
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGA-------DPL------SKAAAIEALH-AYPGGLQVGGGIN-SDNSLSYIEEG-AT  156 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda-------~~~------~~~~i~~~v~-~~~~pl~vGGGIr-~e~~~~~l~~G-ad  156 (316)
                      .++.++++.+++ +++.+++.....       .+.      -+....+.++ .+++|++..|||+ .++++++++.| ||
T Consensus       238 ~~~~~~~~~l~~-~~d~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pvi~~G~i~~~~~a~~~l~~g~aD  316 (729)
T 1o94_A          238 VDGQKFVEMADS-LVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVSKKPVLGVGRYTDPEKMIEIVTKGYAD  316 (729)
T ss_dssp             THHHHHHHHHGG-GCSEEEEEECCSTTGGGTSCCTTTCCTTTTHHHHHHHHTTCSSCEECCSCCCCHHHHHHHHHTTSCS
T ss_pred             HHHHHHHHHHHh-hcCEEEEeeecccccccccCCccccCccccHHHHHHHHHHCCCEEEEeCCCCCHHHHHHHHHCCCCC
Confidence            367788888776 677666665420       110      0233444454 5889999999998 59999999998 99


Q ss_pred             EEEeCCeeecCCCCCHHHHHHHHHH
Q 021156          157 HVIVTSYVFNNGQMDLERLKDLVRV  181 (316)
Q Consensus       157 ~VVigt~~~~~~~~~~eli~ei~~~  181 (316)
                      .|.+|..++.|    |+++.++.+.
T Consensus       317 ~V~~gR~~l~~----P~~~~~~~~g  337 (729)
T 1o94_A          317 IIGCARPSIAD----PFLPQKVEQG  337 (729)
T ss_dssp             BEEESHHHHHC----TTHHHHHHTT
T ss_pred             EEEeCchhhcC----chHHHHHHcC
Confidence            99999999998    9999998764

>1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1

Probab=93.89  E-value=0.11  Score=46.33  Aligned_cols=71  Identities=21%  Similarity=0.069  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHcCCCEEEEeecCCcccc--CCCCHHHHHH--HhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcC--EEEEc
Q 021156          215 LDERVLDFLASYADEFLVHGVDVEGKK--LGIDDELVAL--LGKYSPIPVTYAGGVTTMADLEKIKVAGIGRV--DVTVG  288 (316)
Q Consensus       215 ~~e~a~~~~~~Ga~~ilvtdi~~dG~~--~G~d~eli~~--l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~--gVivG  288 (316)
                      ....++...+.|++.+= |+   .|..  .|...+-++.  +++.+.+||-++||+++.+|+.++.++|  ++  |+-.|
T Consensus       150 i~~a~ria~eaGADfVK-Ts---TG~~~~~gAt~~dv~l~~m~~~v~v~VKaaGGirt~~~al~~i~aG--a~RiG~S~g  223 (234)
T 1n7k_A          150 LSLLVDSSRRAGADIVK-TS---TGVYTKGGDPVTVFRLASLAKPLGMGVKASGGIRSGIDAVLAVGAG--ADIIGTSSA  223 (234)
T ss_dssp             HHHHHHHHHHTTCSEEE-SC---CSSSCCCCSHHHHHHHHHHHGGGTCEEEEESSCCSHHHHHHHHHTT--CSEEEETTH
T ss_pred             HHHHHHHHHHhCCCEEE-eC---CCCCCCCCCCHHHHHHHHHHHHHCCCEEEecCCCCHHHHHHHHHcC--ccccchHHH
Confidence            44567778899999652 32   2332  3445555555  6555559999999999999999999998  66  55555


Q ss_pred             cch
Q 021156          289 SAL  291 (316)
Q Consensus       289 ~Al  291 (316)
                      ..+
T Consensus       224 ~~I  226 (234)
T 1n7k_A          224 VKV  226 (234)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            555

>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}

Probab=93.84  E-value=0.096  Score=49.71  Aligned_cols=72  Identities=11%  Similarity=0.074  Sum_probs=48.8

Q ss_pred             CHHHHHHHHHHcCCCcceEEE--------ecCC-----------cccHHHHHHHHHhC--CCcEEEecCCCH-HHHHHHH
Q 021156           94 SAAEFANLYKEDGLTGGHAIM--------LGAD-----------PLSKAAAIEALHAY--PGGLQVGGGINS-DNSLSYI  151 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvD--------Lda~-----------~~~~~~i~~~v~~~--~~pl~vGGGIr~-e~~~~~l  151 (316)
                      +| +.|+...++|++.+.+.-        ++..           .......+..++.+  .+||+..|||++ .|+.+++
T Consensus       219 s~-e~A~~l~~aGad~I~V~g~GGt~~a~ie~~r~~~~~~~~~~g~pt~~~L~~v~~~~~~ipvia~GGI~~g~Dv~KaL  297 (365)
T 3sr7_A          219 DV-KTIQTAIDLGVKTVDISGRGGTSFAYIENRRGGNRSYLNQWGQTTAQVLLNAQPLMDKVEILASGGIRHPLDIIKAL  297 (365)
T ss_dssp             CH-HHHHHHHHHTCCEEECCCBC--------------CGGGTTCSCBHHHHHHHHGGGTTTSEEEECSSCCSHHHHHHHH
T ss_pred             CH-HHHHHHHHcCCCEEEEeCCCCcccchhhccccccccccccccccHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHH
Confidence            44 578888899988654421        1100           01111223334443  689999999995 9999999


Q ss_pred             HcCCCEEEeCCeeec
Q 021156          152 EEGATHVIVTSYVFN  166 (316)
Q Consensus       152 ~~Gad~VVigt~~~~  166 (316)
                      .+||+.|.+|+.++.
T Consensus       298 alGAdaV~ig~~~l~  312 (365)
T 3sr7_A          298 VLGAKAVGLSRTMLE  312 (365)
T ss_dssp             HHTCSEEEESHHHHH
T ss_pred             HcCCCEEEECHHHHH
Confidence            999999999998764

>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}

Probab=93.83  E-value=0.19  Score=46.35  Aligned_cols=67  Identities=15%  Similarity=0.193  Sum_probs=50.7

Q ss_pred             HHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhc--CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhc
Q 021156          217 ERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKY--SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIF  294 (316)
Q Consensus       217 e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~--~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~  294 (316)
                      +.++++.+.|++.|.+-.         ++.+.+++..+.  .++++.+|||| +.+.+.++.+.|  ++.+.+|+..  |
T Consensus       220 de~~eAl~aGaD~I~LDn---------~~~~~l~~av~~i~~~v~ieaSGGI-~~~~i~~~a~tG--VD~isvG~lt--~  285 (298)
T 3gnn_A          220 DQLRTALAHGARSVLLDN---------FTLDMMRDAVRVTEGRAVLEVSGGV-NFDTVRAIAETG--VDRISIGALT--K  285 (298)
T ss_dssp             HHHHHHHHTTCEEEEEES---------CCHHHHHHHHHHHTTSEEEEEESSC-STTTHHHHHHTT--CSEEECGGGG--T
T ss_pred             HHHHHHHHcCCCEEEECC---------CCHHHHHHHHHHhCCCCeEEEEcCC-CHHHHHHHHHcC--CCEEEECCee--c
Confidence            567788889999877644         344556655442  36889999999 568899999998  9999999988  6


Q ss_pred             cCc
Q 021156          295 GGN  297 (316)
Q Consensus       295 ~g~  297 (316)
                      .-+
T Consensus       286 sa~  288 (298)
T 3gnn_A          286 DVR  288 (298)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            544

>4h83_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, enzyme function initiative; 2.09A {Marine actinobacterium PHSC20C1} PDB: 3no1_A 3msy_A

Probab=93.77  E-value=0.35  Score=45.93  Aligned_cols=138  Identities=14%  Similarity=0.095  Sum_probs=90.9

Q ss_pred             HHHHHHHHcCCCEEE--eCC-eeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHH
Q 021156          145 DNSLSYIEEGATHVI--VTS-YVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLD  221 (316)
Q Consensus       145 e~~~~~l~~Gad~VV--igt-~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~  221 (316)
                      ++++.+.+.|...+=  +|. ...+|    .+.++.+.+.+|+ .+.+.+|+.          .+|...   +..++++.
T Consensus       170 ~~~~~~~~~G~~~~Kikvg~~~~~~d----~~~v~avR~~~G~-~~~l~vDaN----------~~~~~~---~A~~~~~~  231 (388)
T 4h83_A          170 DEMHNYQELGLAGVKFKVGGLSAAED----AARITAAREAAGD-DFIICIDAN----------QGYKPA---VAVDLSRR  231 (388)
T ss_dssp             HHHHHHHHHTBSEEEEECSSSCHHHH----HHHHHHHHHHHCS-SSEEEEECT----------TCBCHH---HHHHHHHH
T ss_pred             HHHHHHHHcCCceEeecCCCCCHHHH----HHHHHHHHHhcCC-CeEEEEecC----------cCCCHH---HHHHHHHH
Confidence            567888888987543  333 22333    7889999999984 566888973          356432   35567777


Q ss_pred             HHHcCCCEEEEeecCCccccCC-CCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccH
Q 021156          222 FLASYADEFLVHGVDVEGKKLG-IDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAY  300 (316)
Q Consensus       222 ~~~~Ga~~ilvtdi~~dG~~~G-~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~  300 (316)
                      +.+.++..+       +.=... -|++.++++++.+++||.+.=.+.+..|+.++++.+ .++.+.+--+-  .+|-...
T Consensus       232 l~~~~~~~i-------EeP~~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~-a~d~i~~d~~~--~GGit~~  301 (388)
T 4h83_A          232 IADLNIRWF-------EEPVEWHNDKRSMRDVRYQGSVPVCAGQTEFSASGCRDLMETG-AIDVCNFDSSW--SGGPTAW  301 (388)
T ss_dssp             TTTSCCCCE-------ESCBCSTTHHHHHHHHHHHSSSCEEECTTCSSHHHHHHHHHHT-CCSEECCCGGG--TTCHHHH
T ss_pred             hhhcCccee-------ecCcccccchHHHHHHHhhcCCCccCCccccChHhHHHHHHcC-CCCeEeeccee--CCCHHHH
Confidence            777766533       111122 257788999999999998888899999999999998 35555554444  4453344


Q ss_pred             HHHHHHHHhh
Q 021156          301 KDVVAWHAQQ  310 (316)
Q Consensus       301 ~~~~~~~~~~  310 (316)
                      .++.+++.++
T Consensus       302 ~kia~~A~~~  311 (388)
T 4h83_A          302 LRTAAIATSY  311 (388)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHC
Confidence            4555555443

>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}

Probab=93.71  E-value=0.21  Score=45.76  Aligned_cols=67  Identities=13%  Similarity=0.173  Sum_probs=51.2

Q ss_pred             HHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhc--CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhc
Q 021156          217 ERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKY--SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIF  294 (316)
Q Consensus       217 e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~--~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~  294 (316)
                      +.++++.+.|++.|.+...         +.+.+++..+.  .++++.+|||| +++.+.++.+.|  ++.+.+|+..  |
T Consensus       209 ~ea~eAl~aGaD~I~LDn~---------~~~~l~~av~~~~~~v~ieaSGGI-t~~~i~~~a~tG--VD~IsvGalt--~  274 (287)
T 3tqv_A          209 DELNQAIAAKADIVMLDNF---------SGEDIDIAVSIARGKVALEVSGNI-DRNSIVAIAKTG--VDFISVGAIT--K  274 (287)
T ss_dssp             HHHHHHHHTTCSEEEEESC---------CHHHHHHHHHHHTTTCEEEEESSC-CTTTHHHHHTTT--CSEEECSHHH--H
T ss_pred             HHHHHHHHcCCCEEEEcCC---------CHHHHHHHHHhhcCCceEEEECCC-CHHHHHHHHHcC--CCEEEEChhh--c
Confidence            6778888999998876443         34556655543  36899999999 568899999988  9999999877  5


Q ss_pred             cCc
Q 021156          295 GGN  297 (316)
Q Consensus       295 ~g~  297 (316)
                      .-+
T Consensus       275 sa~  277 (287)
T 3tqv_A          275 HIK  277 (287)
T ss_dssp             SBC
T ss_pred             CCc
Confidence            543

>1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A*

Probab=93.59  E-value=0.99  Score=41.66  Aligned_cols=156  Identities=15%  Similarity=0.173  Sum_probs=96.6

Q ss_pred             CCCcE--EEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCe-eEEEeCCcc
Q 021156          132 YPGGL--QVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGK-YAIVTDRWQ  208 (316)
Q Consensus       132 ~~~pl--~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~-~~v~~~gw~  208 (316)
                      .++|+  -.+=|-..+.+++.+++|.+.|.++...+.- +-|.+..+++++...+-.+.+-.-+=..+|. .-+.... .
T Consensus        71 ~~VPValHlDHg~~~e~~~~ai~~GFtSVMiDgS~~p~-eENi~~Tk~vv~~ah~~gvsVEaELG~vgg~Ed~~~~~~-~  148 (305)
T 1rvg_A           71 ARVPVAVHLDHGSSYESVLRALRAGFTSVMIDKSHEDF-ETNVRETRRVVEAAHAVGVTVEAELGRLAGIEEHVAVDE-K  148 (305)
T ss_dssp             CSSCEEEEEEEECSHHHHHHHHHTTCSEEEECCTTSCH-HHHHHHHHHHHHHHHHTTCEEEEEESCCCCSCC-------C
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHcCCCeeeeCCCCCCH-HHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCccccc-c
Confidence            55554  5566666799999999999999997654421 0025566666554321112222222100110 0000000 0


Q ss_pred             eecccCHHHHHHHHHHcCCCEEEEeecCCccccC--C---CCHHHHHHHhhcCCCcEEEEeCC-----------------
Q 021156          209 KFSDVYLDERVLDFLASYADEFLVHGVDVEGKKL--G---IDDELVALLGKYSPIPVTYAGGV-----------------  266 (316)
Q Consensus       209 ~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~--G---~d~eli~~l~~~~~iPVIasGGI-----------------  266 (316)
                      +..--++.+..+...+.|++.+-+.-=+.-|.+.  |   .|++.++++.+.+++|+..-||=                 
T Consensus       149 ~~~yT~Peea~~Fv~~TgvD~LAvaiGt~HG~Yk~~g~p~L~~~~L~~I~~~~~vpLVlHGgSsv~~~~~~~~~~~gg~~  228 (305)
T 1rvg_A          149 DALLTNPEEARIFMERTGADYLAVAIGTSHGAYKGKGRPFIDHARLERIARLVPAPLVLHGASAVPPELVERFRASGGEI  228 (305)
T ss_dssp             CTTCCCHHHHHHHHHHHCCSEEEECSSCCSSSBCSSSSCCCCHHHHHHHHHHCCSCEEECSCCCCCHHHHHHHHHTTCCC
T ss_pred             ccccCCHHHHHHHHHHHCCCEEEEecCccccccCCCCCCccCHHHHHHHHHhcCCCEEEeCCCCCcHHHHHHHHhhcccc
Confidence            0011357777777778999977543334556655  3   39999999999999999999987                 


Q ss_pred             ----C-CHHHHHHHHHhCCCcCEEEEccch
Q 021156          267 ----T-TMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       267 ----~-s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                          + +.++++++.+.|  +..+=|++-+
T Consensus       229 ~~~~G~p~e~i~~ai~~G--V~KiNi~Tdl  256 (305)
T 1rvg_A          229 GEAAGIHPEDIKKAISLG--IAKINTDTDL  256 (305)
T ss_dssp             CSCBCCCHHHHHHHHHTT--EEEEEECHHH
T ss_pred             ccCCCCCHHHHHHHHHCC--CeEEEEChHH
Confidence                3 566788888888  8888888765

>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A

Probab=93.57  E-value=0.075  Score=48.53  Aligned_cols=72  Identities=17%  Similarity=0.217  Sum_probs=47.2

Q ss_pred             cHHHHHHHHHhCCCcEE--EecCCC-HHHHHHHHHcCCCEEEeCCeeecCC---------------CCCHHHHHHHHHHh
Q 021156          121 SKAAAIEALHAYPGGLQ--VGGGIN-SDNSLSYIEEGATHVIVTSYVFNNG---------------QMDLERLKDLVRVV  182 (316)
Q Consensus       121 ~~~~i~~~v~~~~~pl~--vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~---------------~~~~eli~ei~~~~  182 (316)
                      +.+.+.++.+...+|+.  .-|||. .+++..+++.|||-|.||+..+..+               --||+.+.++++..
T Consensus       186 d~elI~~Ike~~~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrAI~~s~DP~~~Akafv~Av~~~~~~~~~~~~s~~l  265 (291)
T 3o07_A          186 PVSLLKDVLEKGKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSNPVRLATAVVEATTHFDNPSKLLEVSSDL  265 (291)
T ss_dssp             CHHHHHHHHHHTSCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHHHHHHHHHHTTTCHHHHHHHHSSC
T ss_pred             CHHHHHHHHHccCCCEEEecCCCCCCHHHHHHHHHhCCCEEEEchHHhCCCCHHHHHHHHHHHHHhccCHHHHHHHHhcc
Confidence            34445555456778885  489997 6999999999999999999998741               12567777777766


Q ss_pred             cCceEEEeeeee
Q 021156          183 GKQRLVLDLSCR  194 (316)
Q Consensus       183 G~~~IvvslD~k  194 (316)
                      |.  -+..+++.
T Consensus       266 ~~--~m~g~~~~  275 (291)
T 3o07_A          266 GE--LMGGVSIE  275 (291)
T ss_dssp             CC--C-------
T ss_pred             cc--cccCcchh
Confidence            52  34555553

>1aw2_A Triosephosphate isomerase; psychrophilic, vibrio marinus; 2.65A {Moritella marina} SCOP: c.1.1.1 PDB: 1aw1_A

Probab=93.48  E-value=0.24  Score=44.65  Aligned_cols=147  Identities=14%  Similarity=0.061  Sum_probs=84.2

Q ss_pred             HHHHHHHcCCCEEEeCCeeecC--CCCCHHHHHHHHHHh--cCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHH-H
Q 021156          146 NSLSYIEEGATHVIVTSYVFNN--GQMDLERLKDLVRVV--GKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERV-L  220 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~~~~~--~~~~~eli~ei~~~~--G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a-~  220 (316)
                      ....+.++||+.|+||=.-++.  ++.|...-+++....  | =..++++.-...     -+-.|-..  .+ +.... .
T Consensus        81 S~~mL~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~G-L~pI~CvGEtle-----ere~g~t~--~v-v~~Ql~~  151 (256)
T 1aw2_A           81 SPAMLKEFGATHIIIGHSERREYHAESDEFVAKKFAFLKENG-LTPVLCIGESDA-----QNEAGETM--AV-CARQLDA  151 (256)
T ss_dssp             CHHHHHHHTCCEEEESCHHHHHHSCCCHHHHHHHHHHHHHHT-CEEEEEECCCHH-----HHHTTCHH--HH-HHHHHHH
T ss_pred             CHHHHHHcCCCEEEECchhhccccCCCHHHHHHHHHHHHHCC-CEEEEEcCCcHH-----HHhcCCHH--HH-HHHHHHH
Confidence            3778889999999999765432  333333333333332  3 345666642100     00001000  00 11111 1


Q ss_pred             HHHHcCCC-----EEEEeecCCccccCCCCHHHHHHH----hhc---------CCCcEEEEeCCCCHHHHHHHHHhCCCc
Q 021156          221 DFLASYAD-----EFLVHGVDVEGKKLGIDDELVALL----GKY---------SPIPVTYAGGVTTMADLEKIKVAGIGR  282 (316)
Q Consensus       221 ~~~~~Ga~-----~ilvtdi~~dG~~~G~d~eli~~l----~~~---------~~iPVIasGGI~s~eDi~~l~~~G~g~  282 (316)
                      .+.....+     -|-|-.+..-||..-.+.+.+.++    ++.         -.++|+++|+|.. +++.+++.+. ++
T Consensus       152 ~l~~~~~~~~~~vvIAYEPvWAIGTG~~Atpe~a~evh~~IR~~l~~~~~~~a~~vrIlYGGSV~~-~N~~~l~~~~-di  229 (256)
T 1aw2_A          152 VINTQGVEALEGAIIAYEPIWAIGTGKAATAEDAQRIHAQIRAHIAEKSEAVAKNVVIQYGGSVKP-ENAAAYFAQP-DI  229 (256)
T ss_dssp             HHHHHCGGGGTTCEEEECCTTTTTSSCCCCHHHHHHHHHHHHHHHHTTCHHHHHHCEEEECSCCCT-TTHHHHTTST-TC
T ss_pred             HHhcCCHHHcCCEEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHhcChhhcccccEEEcCCCCH-HHHHHHHcCC-CC
Confidence            12222333     345788999999887766644432    221         1479999999999 9999999985 59


Q ss_pred             CEEEEccchhhccCcccHHHHHHH
Q 021156          283 VDVTVGSALDIFGGNLAYKDVVAW  306 (316)
Q Consensus       283 ~gVivG~Al~~~~g~~~~~~~~~~  306 (316)
                      ||+.||.|-  +. .=+|.++++.
T Consensus       230 DG~LVGgAs--L~-a~~F~~Ii~~  250 (256)
T 1aw2_A          230 DGALVGGAA--LD-AKSFAAIAKA  250 (256)
T ss_dssp             CEEEESGGG--GC-HHHHHHHHHH
T ss_pred             CeeeecHHH--hC-hHHHHHHHHH
Confidence            999999999  63 3344455443

>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A*

Probab=93.47  E-value=0.04  Score=47.99  Aligned_cols=47  Identities=13%  Similarity=0.101  Sum_probs=37.0

Q ss_pred             CCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCH-HHHHHHHHH
Q 021156          133 PGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDL-ERLKDLVRV  181 (316)
Q Consensus       133 ~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~-eli~ei~~~  181 (316)
                      +.|+++.|||+.+.+..++++||+.+|+|+..+...  || +.++++.+.
T Consensus       163 ~~~i~v~GGI~~~~~~~~~~aGad~ivvG~~I~~a~--dp~~~~~~~~~~  210 (216)
T 1q6o_A          163 GFKVTVTGGLALEDLPLFKGIPIHVFIAGRSIRDAA--SPVEAARQFKRS  210 (216)
T ss_dssp             TCEEEEESSCCGGGGGGGTTSCCSEEEESHHHHTSS--CHHHHHHHHHHH
T ss_pred             CCcEEEECCcChhhHHHHHHcCCCEEEEeehhcCCC--CHHHHHHHHHHH
Confidence            678999999998889999999999999999988631  24 445555443

>1yya_A Triosephosphate isomerase; riken structural genomics/proteom initiative, RSGI, structural genomics; 1.60A {Thermus thermophilus}

Probab=93.34  E-value=1  Score=40.46  Aligned_cols=131  Identities=15%  Similarity=0.065  Sum_probs=79.5

Q ss_pred             HHHHHHHcCCCEEEeCCeeecC--CCCCHHHHHHHHHHh--cCceEEEeeeeeecCCeeEEEeCCcceecccCHHHH-HH
Q 021156          146 NSLSYIEEGATHVIVTSYVFNN--GQMDLERLKDLVRVV--GKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDER-VL  220 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~~~~~--~~~~~eli~ei~~~~--G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~-a~  220 (316)
                      ....+.++||+.|+||=.-++.  ++.|...-+++....  | =..++++.-...           ....+ ...+. ..
T Consensus        78 S~~mL~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~G-L~pI~CvGE~le-----------ere~g-~t~~vv~~  144 (250)
T 1yya_A           78 SARMLSDLGCRYAIVGHSERRRYHGETDALVAEKAKRLLEEG-ITPILCVGEPLE-----------VREKG-EAVPYTLR  144 (250)
T ss_dssp             CHHHHHHTTCSEEEESCHHHHHHSCCCHHHHHHHHHHHHHTT-CEEEEEECCCHH-----------HHHTT-CHHHHHHH
T ss_pred             CHHHHHHcCCCEEEeCchhhhcccCCCHHHHHHHHHHHHHCC-CEEEEEcCCcHH-----------HHhcC-CHHHHHHH
Confidence            3778889999999999765432  343333333333333  2 245666642100           00111 11222 22


Q ss_pred             HHH----HcCCC-----EEEEeecCCccccCCCCHHHHHHH----hhc----------CCCcEEEEeCCCCHHHHHHHHH
Q 021156          221 DFL----ASYAD-----EFLVHGVDVEGKKLGIDDELVALL----GKY----------SPIPVTYAGGVTTMADLEKIKV  277 (316)
Q Consensus       221 ~~~----~~Ga~-----~ilvtdi~~dG~~~G~d~eli~~l----~~~----------~~iPVIasGGI~s~eDi~~l~~  277 (316)
                      ++.    ..+.+     -|-|-.+..-||.+-...+.+.++    ++.          -.++|+++|+|.. +++.+++.
T Consensus       145 Ql~~~l~~~~~~~~~~vvIAYEPvWAIGTG~~Atpe~aqevh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~-~N~~~l~~  223 (250)
T 1yya_A          145 QLRGSLEGVEPPGPEALVIAYEPVWAIGTGKNATPEDAEAMHQAIRKALSERYGEAFASRVRILYGGSVNP-KNFADLLS  223 (250)
T ss_dssp             HHHHHTTTCCCSSGGGCEEEECCGGGSSSSCCCCHHHHHHHHHHHHHHHHHHHCHHHHTTCEEEEESSCCT-TTHHHHHT
T ss_pred             HHHHHHhcCCHHHcCcEEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcCccccCceeEEEcCCCCH-HHHHHHHc
Confidence            222    12333     345788889999877766544332    221          3589999999999 99999999


Q ss_pred             hCCCcCEEEEccch
Q 021156          278 AGIGRVDVTVGSAL  291 (316)
Q Consensus       278 ~G~g~~gVivG~Al  291 (316)
                      +. ++||+.||.|-
T Consensus       224 ~~-diDG~LVGgAs  236 (250)
T 1yya_A          224 MP-NVDGGLVGGAS  236 (250)
T ss_dssp             ST-TCCEEEESGGG
T ss_pred             CC-CCCeeEeeHHH
Confidence            85 59999999998

>3m9y_A Triosephosphate isomerase; TIM barrel, glycolysis, gluconeogenesis, pentose; HET: CIT; 1.90A {Staphylococcus aureus} SCOP: c.1.1.1 PDB: 3uwv_A* 3uwu_A* 3uww_A* 3uwy_A 3uwz_A*

Probab=93.24  E-value=0.89  Score=40.88  Aligned_cols=131  Identities=12%  Similarity=0.091  Sum_probs=76.2

Q ss_pred             HHHHHHHcCCCEEEeCCeeecC--CCCCHHHHHHHHHHh--cCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHH-H
Q 021156          146 NSLSYIEEGATHVIVTSYVFNN--GQMDLERLKDLVRVV--GKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERV-L  220 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~~~~~--~~~~~eli~ei~~~~--G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a-~  220 (316)
                      ....+.++||+.|+||=.-++.  ++.|...-+++....  | =..++++.=...           ....+ ...+.. .
T Consensus        82 S~~mL~d~G~~~ViiGHSERR~~f~Etd~~V~~Kv~~Al~~G-L~pIlCvGEtle-----------ere~g-~t~~vv~~  148 (254)
T 3m9y_A           82 SPVALADLGVKYVVIGHSERRELFHETDEEINKKAHAIFKHG-MTPIICVGETDE-----------ERESG-KANDVVGE  148 (254)
T ss_dssp             CHHHHHHTTCCEEEESCHHHHHHSCCCHHHHHHHHHHHHHTT-CEEEEEECCCHH-----------HHHTT-CHHHHHHH
T ss_pred             CHHHHHHcCCCEEEECcccccCccCCCHHHHHHHHHHHHHCC-CEEEEEcCCcHH-----------HHHCC-CHHHHHHH
Confidence            3778889999999999764432  333233333333333  2 245666642100           00011 111221 1


Q ss_pred             HHHH--cCCC-------EEEEeecCCccccCCCCHHHHHH----Hhh----------cCCCcEEEEeCCCCHHHHHHHHH
Q 021156          221 DFLA--SYAD-------EFLVHGVDVEGKKLGIDDELVAL----LGK----------YSPIPVTYAGGVTTMADLEKIKV  277 (316)
Q Consensus       221 ~~~~--~Ga~-------~ilvtdi~~dG~~~G~d~eli~~----l~~----------~~~iPVIasGGI~s~eDi~~l~~  277 (316)
                      ++..  .+++       -|-|-.+..-||..-...+.+.+    +++          .-+++|+++|+| +++++.+++.
T Consensus       149 Ql~~~l~~~~~~~~~~vvIAYEPvWAIGTG~~At~e~aqevh~~IR~~l~~~~~~~~a~~~rIlYGGSV-~~~N~~~l~~  227 (254)
T 3m9y_A          149 QVKKAVAGLSEDQLKSVVIAYEPIWAIGTGKSSTSEDANEMCAFVRQTIADLSSKEVSEATRIQYGGSV-KPNNIKEYMA  227 (254)
T ss_dssp             HHHHHHTTCCHHHHHHCEEEECCGGGCC--CCCCHHHHHHHHHHHHHHHHHHSCHHHHTTSEEEECSCC-CTTTHHHHHT
T ss_pred             HHHHHHhcCCHHHhCCEEEEECChhhhcCCCCCCHHHHHHHHHHHHHHHHHhcChhhcCCccEEEcCCc-CHHHHHHHHc
Confidence            2111  1332       35578888999987776554433    222          125899999999 8899999997


Q ss_pred             hCCCcCEEEEccch
Q 021156          278 AGIGRVDVTVGSAL  291 (316)
Q Consensus       278 ~G~g~~gVivG~Al  291 (316)
                      .. ++||+.||.|-
T Consensus       228 ~~-diDG~LVGgAS  240 (254)
T 3m9y_A          228 QT-DIDGALVGGAS  240 (254)
T ss_dssp             ST-TCCEEEESGGG
T ss_pred             CC-CCCeEEeeHHh
Confidence            65 69999999998

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=93.23  E-value=0.1  Score=51.50  Aligned_cols=69  Identities=17%  Similarity=0.168  Sum_probs=48.8

Q ss_pred             HHHHHHHHcCCCcceEEEecCCc------------ccHHHHHHHH---HhC------CCcEEEecCCC-HHHHHHHHHcC
Q 021156           97 EFANLYKEDGLTGGHAIMLGADP------------LSKAAAIEAL---HAY------PGGLQVGGGIN-SDNSLSYIEEG  154 (316)
Q Consensus        97 e~a~~~~~~G~~~l~lvDLda~~------------~~~~~i~~~v---~~~------~~pl~vGGGIr-~e~~~~~l~~G  154 (316)
                      +.|+.+.++|++.+.+ -..++.            +....+.++.   +..      ++|++..|||+ ..|+.+++.+|
T Consensus       296 ~~a~~l~~aGad~I~V-g~~~g~~~~~r~~~~~g~p~~~~l~~v~~~~~~~~~~~~~~ipvia~GGi~~~~di~kAlalG  374 (503)
T 1me8_A          296 EGFRYLADAGADFIKI-GIGGGSICITREQKGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAMG  374 (503)
T ss_dssp             HHHHHHHHHTCSEEEE-CSSCSTTCCSTTTTCCCCCHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHHHTT
T ss_pred             HHHHHHHHhCCCeEEe-cccCCcCcccccccCCCCchHHHHHHHHHHHHHHhhhcCCCceEEEeCCCCCHHHHHHHHHcC
Confidence            4677788889886655 443320            1122233332   333      69999999999 59999999999


Q ss_pred             CCEEEeCCeeec
Q 021156          155 ATHVIVTSYVFN  166 (316)
Q Consensus       155 ad~VVigt~~~~  166 (316)
                      |+.|.+|+.+..
T Consensus       375 A~~V~iG~~~~~  386 (503)
T 1me8_A          375 ADFIMLGRYFAR  386 (503)
T ss_dssp             CSEEEESHHHHT
T ss_pred             CCEEEECchhhc
Confidence            999999998755

>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}

Probab=93.15  E-value=0.18  Score=45.02  Aligned_cols=87  Identities=13%  Similarity=0.021  Sum_probs=54.4

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCC--c-----ccHHHHHHHHHh--CCCcEEEecCCCHHHHHHHHHcCCCEEEeCCe
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGAD--P-----LSKAAAIEALHA--YPGGLQVGGGINSDNSLSYIEEGATHVIVTSY  163 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~--~-----~~~~~i~~~v~~--~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~  163 (316)
                      .++.|+.+ -.+.|++.+-+=-.-.+  +     .....+.++.+.  .++|+..-|||+.+++..++++||+.|.++++
T Consensus       143 ht~~Ea~~-A~~~GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~~~~iPvvAiGGI~~~ni~~~~~aGa~gvav~sa  221 (243)
T 3o63_A          143 HDPDQVAA-AAAGDADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGGDDKPWFAIGGINAQRLPAVLDAGARRIVVVRA  221 (243)
T ss_dssp             CSHHHHHH-HHHSSCSEEEECCSSCCCC-----CCCHHHHHHHHTC---CCCEEEESSCCTTTHHHHHHTTCCCEEESHH
T ss_pred             CCHHHHHH-HhhCCCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhccCCCCEEEecCCCHHHHHHHHHcCCCEEEEeHH
Confidence            46776443 44578875544111111  1     123334444333  47999999999889999999999999999999


Q ss_pred             eecCCCCCH-HHHHHHHHHh
Q 021156          164 VFNNGQMDL-ERLKDLVRVV  182 (316)
Q Consensus       164 ~~~~~~~~~-eli~ei~~~~  182 (316)
                      ++...  || +.++++.+.+
T Consensus       222 i~~a~--dp~~a~~~l~~~~  239 (243)
T 3o63_A          222 ITSAD--DPRAAAEQLRSAL  239 (243)
T ss_dssp             HHTCS--SHHHHHHHHHHHH
T ss_pred             HhCCC--CHHHHHHHHHHHH
Confidence            88631  24 3445554443

>3fok_A Uncharacterized protein CGL0159; CGL0159 ,brevibacterium flavum., structural genomics, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum}

Probab=93.10  E-value=1.7  Score=40.02  Aligned_cols=127  Identities=18%  Similarity=0.096  Sum_probs=68.9

Q ss_pred             HHHHHHHcCCCEEEeCCeeecCCCC---CHHHHHHHHHH---hcCceEEEe--eeeeecCCeeEEEeCCcceecccC-HH
Q 021156          146 NSLSYIEEGATHVIVTSYVFNNGQM---DLERLKDLVRV---VGKQRLVLD--LSCRKKDGKYAIVTDRWQKFSDVY-LD  216 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~~~~~~~~---~~eli~ei~~~---~G~~~Ivvs--lD~k~~~g~~~v~~~gw~~~~~~~-~~  216 (316)
                      +++.+++.|||-|-+.....-+.+.   ..+.+.+++++   ||= -+++.  +-.+ .++  .+...     .+.+ ..
T Consensus       133 sVe~AvrlGADaV~~l~~i~~Gs~~e~~~l~~la~vv~ea~~~Gl-P~~~ep~~y~r-~gg--~v~~~-----~dp~~Va  203 (307)
T 3fok_A          133 NVSSMVDRGVDFAKTLVRINLSDAGTAPTLEATAHAVNEAAAAQL-PIMLEPFMSNW-VNG--KVVND-----LSTDAVI  203 (307)
T ss_dssp             CHHHHHHHTCCEEEEEEEECTTCTTHHHHHHHHHHHHHHHHHTTC-CEEEEEEEEEE-ETT--EEEEC-----CSHHHHH
T ss_pred             CHHHHHHCCCCEEEEEEEECCCChhHHHHHHHHHHHHHHHHHcCC-cEEEEeecccc-CCC--CcCCC-----CCHHHHH
Confidence            7888899999987643222211010   13344444433   431 12222  2222 122  22211     1112 33


Q ss_pred             HHHHHHHHcCCC----EEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCC--HHHHHH----HHHhCCCcCEEE
Q 021156          217 ERVLDFLASYAD----EFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTT--MADLEK----IKVAGIGRVDVT  286 (316)
Q Consensus       217 e~a~~~~~~Ga~----~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s--~eDi~~----l~~~G~g~~gVi  286 (316)
                      -.++...++|++    .+= +...          +.++++.+.+.+||+..||=..  .+++.+    .++. .|+.|++
T Consensus       204 ~aaRiAaELGADs~~tivK-~~y~----------e~f~~Vv~a~~vPVViaGG~k~~~~~e~L~~v~~A~~~-aGa~Gv~  271 (307)
T 3fok_A          204 QSVAIAAGLGNDSSYTWMK-LPVV----------EEMERVMESTTMPTLLLGGEGGNDPDATFASWEHALTL-PGVRGLT  271 (307)
T ss_dssp             HHHHHHHTCSSCCSSEEEE-EECC----------TTHHHHGGGCSSCEEEECCSCC--CHHHHHHHHHHTTS-TTEEEEE
T ss_pred             HHHHHHHHhCCCcCCCEEE-eCCc----------HHHHHHHHhCCCCEEEeCCCCCCCHHHHHHHHHHHHHh-CCCeEEe
Confidence            346777889999    442 2222          2357888888999999998874  444433    3331 1499999


Q ss_pred             Eccchhh
Q 021156          287 VGSALDI  293 (316)
Q Consensus       287 vG~Al~~  293 (316)
                      +||.+|-
T Consensus       272 vGRNIfQ  278 (307)
T 3fok_A          272 VGRTLLY  278 (307)
T ss_dssp             ECTTTSS
T ss_pred             echhhcc
Confidence            9999944

>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5

Probab=93.09  E-value=0.53  Score=43.99  Aligned_cols=197  Identities=13%  Similarity=0.010  Sum_probs=115.4

Q ss_pred             cCHHHHHHHHHHcCCCcceEE--------EecCCc--ccHHHHHHHHH-h-CCCcEEEec--CC-CHHHHHHHHHcCCCE
Q 021156           93 KSAAEFANLYKEDGLTGGHAI--------MLGADP--LSKAAAIEALH-A-YPGGLQVGG--GI-NSDNSLSYIEEGATH  157 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lv--------DLda~~--~~~~~i~~~v~-~-~~~pl~vGG--GI-r~e~~~~~l~~Gad~  157 (316)
                      .+-+++++.+.+.|++.+-+-        +-++..  ....+.++.++ . .+.|+++=+  |. +.++++++.++|++.
T Consensus        30 e~k~~i~~~L~~~Gvd~IEvG~~~g~p~ssp~~g~~~~~~~e~l~~i~~~~~~~~i~~l~~p~~~~~~~i~~a~~aGvd~  109 (345)
T 1nvm_A           30 DDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFGRHTDLEYIEAVAGEISHAQIATLLLPGIGSVHDLKNAYQAGARV  109 (345)
T ss_dssp             HHHHHHHHHHHHHTCSEEECSCTTSTTCCBTTTBCCSSCHHHHHHHHHTTCSSSEEEEEECBTTBCHHHHHHHHHHTCCE
T ss_pred             HHHHHHHHHHHHcCCCEEEEecCCCCCCCCCcccCCCCCHHHHHHHHHhhCCCCEEEEEecCCcccHHHHHHHHhCCcCE
Confidence            355678999999887755552        111111  23344444443 3 246776553  33 358899999999999


Q ss_pred             EEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCC
Q 021156          158 VIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDV  237 (316)
Q Consensus       158 VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~  237 (316)
                      +.|-.. .++-+. .....+.+++.|- .+.+++-.            ... .+.-.+.+.++.+.+.|++.|-+.|.. 
T Consensus       110 v~I~~~-~s~~~~-~~~~i~~ak~~G~-~v~~~~~~------------a~~-~~~e~~~~ia~~~~~~Ga~~i~l~DT~-  172 (345)
T 1nvm_A          110 VRVATH-CTEADV-SKQHIEYARNLGM-DTVGFLMM------------SHM-IPAEKLAEQGKLMESYGATCIYMADSG-  172 (345)
T ss_dssp             EEEEEE-TTCGGG-GHHHHHHHHHHTC-EEEEEEES------------TTS-SCHHHHHHHHHHHHHHTCSEEEEECTT-
T ss_pred             EEEEEe-ccHHHH-HHHHHHHHHHCCC-EEEEEEEe------------CCC-CCHHHHHHHHHHHHHCCCCEEEECCCc-
Confidence            888532 221000 2233334455552 33333311            111 111246788999999999988776653 


Q ss_pred             ccccCCCC-HHHHHHHhhcC--CCcEEEEe----CCCCHHHHHHHHHhCC-CcCEEEEccchhhccCcccHHHHHHHHHh
Q 021156          238 EGKKLGID-DELVALLGKYS--PIPVTYAG----GVTTMADLEKIKVAGI-GRVDVTVGSALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       238 dG~~~G~d-~eli~~l~~~~--~iPVIasG----GI~s~eDi~~l~~~G~-g~~gVivG~Al~~~~g~~~~~~~~~~~~~  309 (316)
                       |.....+ .++++.+++.+  ++|+-+-+    |..-.. ...+.++|. -+++.+.|-+-  -.|+.++++++..++.
T Consensus       173 -G~~~P~~v~~lv~~l~~~~~~~~pi~~H~Hn~~G~avAn-~laA~~aGa~~vd~tv~GlG~--~aGN~~le~lv~~L~~  248 (345)
T 1nvm_A          173 -GAMSMNDIRDRMRAFKAVLKPETQVGMHAHHNLSLGVAN-SIVAVEEGCDRVDASLAGMGA--GAGNAPLEVFIAVAER  248 (345)
T ss_dssp             -CCCCHHHHHHHHHHHHHHSCTTSEEEEECBCTTSCHHHH-HHHHHHTTCCEEEEBGGGCSS--TTCBCBHHHHHHHHHH
T ss_pred             -CccCHHHHHHHHHHHHHhcCCCceEEEEECCCccHHHHH-HHHHHHcCCCEEEecchhccC--CccCcCHHHHHHHHHh
Confidence             6665333 34788888877  78887733    444433 445556773 24556666555  5688899999887765


Q ss_pred             h
Q 021156          310 Q  310 (316)
Q Consensus       310 ~  310 (316)
                      .
T Consensus       249 ~  249 (345)
T 1nvm_A          249 L  249 (345)
T ss_dssp             H
T ss_pred             c
Confidence            3

>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A

Probab=92.87  E-value=0.046  Score=48.13  Aligned_cols=48  Identities=10%  Similarity=0.041  Sum_probs=36.6

Q ss_pred             CCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCH-HHHHHHHHH
Q 021156          132 YPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDL-ERLKDLVRV  181 (316)
Q Consensus       132 ~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~-eli~ei~~~  181 (316)
                      .+.+++|.||||.++++.+.++|||.+|+|+..++..  || +.++++.+.
T Consensus       167 ~~~~i~v~gGI~~~~~~~~~~aGad~~VvG~~I~~a~--dp~~a~~~~~~~  215 (221)
T 3exr_A          167 MGFRVSVTGGLSVDTLKLFEGVDVFTFIAGRGITEAK--NPAGAARAFKDE  215 (221)
T ss_dssp             HTCEEEEESSCCGGGGGGGTTCCCSEEEECHHHHTSS--SHHHHHHHHHHH
T ss_pred             CCceEEEECCCCHHHHHHHHHCCCCEEEECchhhCCC--CHHHHHHHHHHH
Confidence            3578999999998888899999999999999887531  24 344454443

>3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A*

Probab=92.76  E-value=0.059  Score=50.64  Aligned_cols=47  Identities=15%  Similarity=0.144  Sum_probs=38.7

Q ss_pred             CCCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeee-cCCCCCHHHHHHHHHHh
Q 021156          132 YPGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVF-NNGQMDLERLKDLVRVV  182 (316)
Q Consensus       132 ~~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~-~~~~~~~eli~ei~~~~  182 (316)
                      ..+||+.-|||.+ +|+.+.+.+||+-|-|+|++. ++    |.++.++.+..
T Consensus       276 ~~~pIIg~GGI~s~~Da~e~i~aGAs~Vqv~Ta~~y~G----P~~~~~I~~~L  324 (354)
T 3tjx_A          276 PGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQEEG----PSIFERLTSEL  324 (354)
T ss_dssp             TTSEEEEESSCCSHHHHHHHHHHTEEEEEECHHHHHHC----TTHHHHHHHHH
T ss_pred             CCCcEEEeCCcCCHHHHHHHHHcCCCEEEEChhhhhcC----chHHHHHHHHH
Confidence            3689999999985 999999999999999999975 54    77777766543

>2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A*

Probab=92.72  E-value=0.23  Score=42.86  Aligned_cols=82  Identities=17%  Similarity=0.141  Sum_probs=52.0

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHhCC-CcEEEecCCCHH--HHHHHHHcCCCEEEeCCeeecCCCC
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAYP-GGLQVGGGINSD--NSLSYIEEGATHVIVTSYVFNNGQM  170 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~~-~pl~vGGGIr~e--~~~~~l~~Gad~VVigt~~~~~~~~  170 (316)
                      ....+++...+.|++++.+.   ..  ..+.+.+..+..+ .++++.|||+.+  ++.+++++||+.+|+|+..+..+  
T Consensus       120 ~v~~~~~~a~~~G~~G~~~~---~~--~~~~i~~lr~~~~~~~~iv~gGI~~~g~~~~~~~~aGad~vvvGr~I~~a~--  192 (208)
T 2czd_A          120 LTDRFIEVANEIEPFGVIAP---GT--RPERIGYIRDRLKEGIKILAPGIGAQGGKAKDAVKAGADYIIVGRAIYNAP--  192 (208)
T ss_dssp             GHHHHHHHHHHHCCSEEECC---CS--STHHHHHHHHHSCTTCEEEECCCCSSTTHHHHHHHHTCSEEEECHHHHTSS--
T ss_pred             HHHHHHHHHHHhCCcEEEEC---CC--ChHHHHHHHHhCCCCeEEEECCCCCCCCCHHHHHHcCCCEEEEChHHhcCC--
Confidence            35566777777888765332   11  1223323222333 356799999964  89999999999999999988631  


Q ss_pred             CH-HHHHHHHHHh
Q 021156          171 DL-ERLKDLVRVV  182 (316)
Q Consensus       171 ~~-eli~ei~~~~  182 (316)
                      +| +.++++.+.+
T Consensus       193 dp~~~~~~l~~~i  205 (208)
T 2czd_A          193 NPREAAKAIYDEI  205 (208)
T ss_dssp             SHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            14 4455554443

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=92.63  E-value=0.051  Score=55.51  Aligned_cols=80  Identities=8%  Similarity=-0.090  Sum_probs=58.4

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCc-------------ccHHHHHHHHH-hCCCcEEEecCCC-HHHHHHHHHcC-CCE
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADP-------------LSKAAAIEALH-AYPGGLQVGGGIN-SDNSLSYIEEG-ATH  157 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~-------------~~~~~i~~~v~-~~~~pl~vGGGIr-~e~~~~~l~~G-ad~  157 (316)
                      +..++++.+++ +++.+   ++....             .......+.++ .+++|++.-|||+ .++++++++.| ||.
T Consensus       245 ~~~~~~~~l~~-~~d~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pvi~~G~i~~~~~a~~~l~~g~~d~  320 (690)
T 3k30_A          245 DIEGVLRELGE-LPDLW---DFAMGSWEGDSVTSRFAPEGRQEEFVAGLKKLTTKPVVGVGRFTSPDAMVRQIKAGILDL  320 (690)
T ss_dssp             HHHHHHHHHTT-SSSEE---EEECSCHHHHTCCTTTCCTTTTHHHHTTSGGGCSSCEEECSCCCCHHHHHHHHHTTSCSE
T ss_pred             HHHHHHHHHHh-hcCEE---EEecccccccCCCCccCCccccHHHHHHHHHHcCCeEEEeCCCCCHHHHHHHHHCCCcce
Confidence            45677777765 55544   444320             11223334444 5789999999998 59999999998 999


Q ss_pred             EEeCCeeecCCCCCHHHHHHHHHH
Q 021156          158 VIVTSYVFNNGQMDLERLKDLVRV  181 (316)
Q Consensus       158 VVigt~~~~~~~~~~eli~ei~~~  181 (316)
                      |.+|..++.|    |++++++.+.
T Consensus       321 v~~gR~~~~~----P~~~~~~~~g  340 (690)
T 3k30_A          321 IGAARPSIAD----PFLPNKIRDG  340 (690)
T ss_dssp             EEESHHHHHC----TTHHHHHHTT
T ss_pred             EEEcHHhHhC----ccHHHHHHcC
Confidence            9999999998    9999999764

>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*

Probab=92.54  E-value=2.3  Score=36.88  Aligned_cols=124  Identities=13%  Similarity=0.136  Sum_probs=81.8

Q ss_pred             HHHHHHhCC-CcEEEecCCC-H-HHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeE
Q 021156          125 AIEALHAYP-GGLQVGGGIN-S-DNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYA  201 (316)
Q Consensus       125 i~~~v~~~~-~pl~vGGGIr-~-e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~  201 (316)
                      +.+.+++.+ +|+..+=-.+ . +-++.+++.|++.+-+.......    .+.++++.++|+ +. .+..+.-       
T Consensus         9 ~~~~l~~~~~i~v~r~~~~~~~~~~~~al~~gGv~~iel~~k~~~~----~~~i~~l~~~~~-~~-~vgagtv-------   75 (214)
T 1wbh_A            9 AESILTTGPVVPVIVVKKLEHAVPMAKALVAGGVRVLNVTLRTECA----VDAIRAIAKEVP-EA-IVGAGTV-------   75 (214)
T ss_dssp             HHHHHHSCSEEEEECCSSGGGHHHHHHHHHHTTCCEEEEESCSTTH----HHHHHHHHHHCT-TS-EEEEESC-------
T ss_pred             HHHHHHHCCEEEEEECCCHHHHHHHHHHHHHcCCCEEEEeCCChhH----HHHHHHHHHHCc-CC-EEeeCEE-------
Confidence            344455444 4666665554 3 56889999999998887443222    678888989885 32 2222211       


Q ss_pred             EEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCC
Q 021156          202 IVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIG  281 (316)
Q Consensus       202 v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g  281 (316)
                                 ++ .+.++.+.+.|++.+.  .       .+.|.+..+..+ ..++|++.+  +.|++++.++.+.|  
T Consensus        76 -----------i~-~d~~~~A~~aGAd~v~--~-------p~~d~~v~~~~~-~~g~~~i~G--~~t~~e~~~A~~~G--  129 (214)
T 1wbh_A           76 -----------LN-PQQLAEVTEAGAQFAI--S-------PGLTEPLLKAAT-EGTIPLIPG--ISTVSELMLGMDYG--  129 (214)
T ss_dssp             -----------CS-HHHHHHHHHHTCSCEE--E-------SSCCHHHHHHHH-HSSSCEEEE--ESSHHHHHHHHHTT--
T ss_pred             -----------EE-HHHHHHHHHcCCCEEE--c-------CCCCHHHHHHHH-HhCCCEEEe--cCCHHHHHHHHHCC--
Confidence                       11 2678888899999663  1       124666655444 467888873  99999999999998  


Q ss_pred             cCEEEE
Q 021156          282 RVDVTV  287 (316)
Q Consensus       282 ~~gViv  287 (316)
                      ++.+-+
T Consensus       130 ad~v~~  135 (214)
T 1wbh_A          130 LKEFKF  135 (214)
T ss_dssp             CCEEEE
T ss_pred             CCEEEE
Confidence            777766

>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*

Probab=92.43  E-value=1.8  Score=39.12  Aligned_cols=154  Identities=9%  Similarity=0.032  Sum_probs=86.7

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCCcc---cHHH---HHHHHH-hCCCcEEEecCCCHHHHHHHHHc--CCCEEE-eCC
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGADPL---SKAA---AIEALH-AYPGGLQVGGGINSDNSLSYIEE--GATHVI-VTS  162 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~~~---~~~~---i~~~v~-~~~~pl~vGGGIr~e~~~~~l~~--Gad~VV-igt  162 (316)
                      +.+++.|+...++|++   ++|+.+...   ....   +++.++ .+++|+.++.= +.+-+++.+++  |++.|- +..
T Consensus        34 ~~a~~~a~~~v~~GAd---iIDIg~~s~~~eE~~rv~~vi~~l~~~~~~pisIDT~-~~~v~~aal~a~~Ga~iINdvs~  109 (271)
T 2yci_X           34 RPIQEWARRQAEKGAH---YLDVNTGPTADDPVRVMEWLVKTIQEVVDLPCCLDST-NPDAIEAGLKVHRGHAMINSTSA  109 (271)
T ss_dssp             HHHHHHHHHHHHTTCS---EEEEECCSCSSCHHHHHHHHHHHHHHHCCCCEEEECS-CHHHHHHHHHHCCSCCEEEEECS
T ss_pred             HHHHHHHHHHHHCCCC---EEEEcCCcCchhHHHHHHHHHHHHHHhCCCeEEEeCC-CHHHHHHHHHhCCCCCEEEECCC
Confidence            4577888888888865   999987521   1222   233343 46899999873 56888999998  998764 322


Q ss_pred             eeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCE--EEEeecCCc-c
Q 021156          163 YVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADE--FLVHGVDVE-G  239 (316)
Q Consensus       163 ~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~--ilvtdi~~d-G  239 (316)
                      . ..+    .+.+.+++++||..-|+...|-+   |.  ..+  ..+. -..+.+....+.+.|+..  |++-..-.- |
T Consensus       110 ~-~d~----~~~~~~~~a~~~~~vv~m~~d~~---G~--p~t--~~~~-~~~l~~~~~~a~~~Gi~~~~IilDPg~gfig  176 (271)
T 2yci_X          110 D-QWK----MDIFFPMAKKYEAAIIGLTMNEK---GV--PKD--ANDR-SQLAMELVANADAHGIPMTELYIDPLILPVN  176 (271)
T ss_dssp             C-HHH----HHHHHHHHHHHTCEEEEESCBTT---BC--CCS--HHHH-HHHHHHHHHHHHHTTCCGGGEEEECCCCCTT
T ss_pred             C-ccc----cHHHHHHHHHcCCCEEEEecCCC---CC--CCC--HHHH-HHHHHHHHHHHHHCCCCcccEEEecCCCccc
Confidence            2 121    24455677888743333333311   10  000  0000 012445667788899874  654332211 3


Q ss_pred             ccCCCCHHHHHHHhhc---C--CCcEEEE
Q 021156          240 KKLGIDDELVALLGKY---S--PIPVTYA  263 (316)
Q Consensus       240 ~~~G~d~eli~~l~~~---~--~iPVIas  263 (316)
                      +....++++++.+...   .  +.|++.+
T Consensus       177 k~~~~~~~~l~~l~~~~~~~~p~~p~l~G  205 (271)
T 2yci_X          177 VAQEHAVEVLETIRQIKLMANPAPRTVLG  205 (271)
T ss_dssp             TSTHHHHHHHHHHHHHTTSSSSCCEEEEE
T ss_pred             cCHHHHHHHHHHHHHHHHhCCCCCCEEEe
Confidence            3333467777777543   2  3788774

>1wuf_A Hypothetical protein LIN2664; structural genomics, unknown function, nysgxrc target T2186, superfamily, protein structure initiative, PSI; 2.90A {Listeria innocua} SCOP: c.1.11.2 d.54.1.1

Probab=92.42  E-value=1.1  Score=42.33  Aligned_cols=136  Identities=13%  Similarity=0.105  Sum_probs=89.7

Q ss_pred             HHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHH
Q 021156          145 DNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLA  224 (316)
Q Consensus       145 e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~  224 (316)
                      ++++++.+.|...+=+--....    +.+.++.+.+.+ + .+-+.+|+   ++       +|...   +. ++++.+.+
T Consensus       167 ~~a~~~~~~G~~~~KiKvg~~~----d~~~v~avr~a~-~-~~~l~vDa---N~-------~~~~~---~a-~~~~~l~~  226 (393)
T 1wuf_A          167 QLVNQYVDQGYERVKLKIAPNK----DIQFVEAVRKSF-P-KLSLMADA---NS-------AYNRE---DF-LLLKELDQ  226 (393)
T ss_dssp             HHHHHHHHHTCCEEEEECBTTB----SHHHHHHHHTTC-T-TSEEEEEC---TT-------CCCGG---GH-HHHHTTGG
T ss_pred             HHHHHHHHHhhHhheeccChHH----HHHHHHHHHHHc-C-CCEEEEEC---CC-------CCCHH---HH-HHHHHHHh
Confidence            4567777889876543211223    488999998888 3 46788887   33       45421   34 67777777


Q ss_pred             cCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHH
Q 021156          225 SYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVV  304 (316)
Q Consensus       225 ~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~  304 (316)
                      .++..|  -    + =....|++.++++++.+++||.+.--+.+..|+.++++.+ .++.+.+=-+-  .+|--...++.
T Consensus       227 ~~i~~i--E----q-P~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~-a~d~v~ik~~~--~GGit~~~~ia  296 (393)
T 1wuf_A          227 YDLEMI--E----Q-PFGTKDFVDHAWLQKQLKTRICLDENIRSVKDVEQAHSIG-SCRAINLKLAR--VGGMSSALKIA  296 (393)
T ss_dssp             GTCSEE--E----C-CSCSSCSHHHHHHHTTCSSEEEECTTCCSHHHHHHHHHHT-CCSEEEECTGG--GTSHHHHHHHH
T ss_pred             CCCeEE--E----C-CCCCcCHHHHHHHHHhCCCCEEECCCcCCHHHHHHHHHhC-CCCEEEeChhh--hCCHHHHHHHH
Confidence            666633  1    1 1122378889999988899998888899999999999988 36666665554  45543444555


Q ss_pred             HHHHhh
Q 021156          305 AWHAQQ  310 (316)
Q Consensus       305 ~~~~~~  310 (316)
                      ++++++
T Consensus       297 ~~A~~~  302 (393)
T 1wuf_A          297 EYCALN  302 (393)
T ss_dssp             HHHHHT
T ss_pred             HHHHHc
Confidence            555553

>1o5x_A TIM, triosephosphate isomerase; 2- phosphoglycerate, META-phosphate, catalytic LOOP6; HET: 2PG; 1.10A {Plasmodium falciparum} SCOP: c.1.1.1 PDB: 1lzo_A 1m7o_A* 1m7p_A* 1lyx_A* 1ydv_A 2vfi_A* 3psw_A 3psv_A 3pwa_A 2vfh_A* 2vff_A 2vfg_A* 1vga_A 1woa_A* 1wob_A 3pvf_A 3py2_A 2vfd_A 2vfe_A*

Probab=92.21  E-value=0.98  Score=40.46  Aligned_cols=141  Identities=14%  Similarity=0.118  Sum_probs=83.1

Q ss_pred             HHHHHHHcCCCEEEeCCeeecC--CCCCHHHHHHHHHHh--cCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHH-H
Q 021156          146 NSLSYIEEGATHVIVTSYVFNN--GQMDLERLKDLVRVV--GKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERV-L  220 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~~~~~--~~~~~eli~ei~~~~--G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a-~  220 (316)
                      ....+.++||+.|+||=.-++.  ++.|...-+++....  | =..++++.=...     -      ...+ ...+.. .
T Consensus        79 S~~mL~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~G-L~pI~CvGEtle-----e------re~g-~t~~vv~~  145 (248)
T 1o5x_A           79 SAEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKNN-LKAVVCFGESLE-----Q------REQN-KTIEVITK  145 (248)
T ss_dssp             CHHHHHHTTCCEEEECCHHHHHHSCCCHHHHHHHHHHHHHTT-CEEEEEECCCHH-----H------HHTT-CHHHHHHH
T ss_pred             CHHHHHHcCCCEEEeCChhhhcccCCCHHHHHHHHHHHHHCC-CEEEEEcCCcHH-----H------HhcC-ChHHHHHH
Confidence            3778889999999999765432  343333333333333  2 245666642100     0      0011 122222 2


Q ss_pred             HHHH--cCC----CEE-EEeecCCccccCCCCHHHHHHH----hhc----------CCCcEEEEeCCCCHHHHHHHHHhC
Q 021156          221 DFLA--SYA----DEF-LVHGVDVEGKKLGIDDELVALL----GKY----------SPIPVTYAGGVTTMADLEKIKVAG  279 (316)
Q Consensus       221 ~~~~--~Ga----~~i-lvtdi~~dG~~~G~d~eli~~l----~~~----------~~iPVIasGGI~s~eDi~~l~~~G  279 (316)
                      ++..  .++    .-+ -|-.+..-||..-...+.+.++    ++.          -+++|+++|+|..- ++.+++.+.
T Consensus       146 Ql~~~l~~~~~~~~~vIAYEPvWAIGTG~~Atpe~a~evh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~-N~~~l~~~~  224 (248)
T 1o5x_A          146 QVKAFVDLIDNFDNVILVYEPLWAIGTGKTATPEQAQLVHKEIRKIVKDTCGEKQANQIRILYGGSVNTE-NCSSLIQQE  224 (248)
T ss_dssp             HHHTTGGGCCCTTSEEEEECCGGGSSSSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHSEEEECSCCCTT-THHHHHTST
T ss_pred             HHHHHHhhhhhhcCEEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcCccccCcceEEEcCCCCHH-HHHHHHcCC
Confidence            2221  112    222 3678888899877766544332    221          14799999999886 899999865


Q ss_pred             CCcCEEEEccchhhccCcccHHHHHH
Q 021156          280 IGRVDVTVGSALDIFGGNLAYKDVVA  305 (316)
Q Consensus       280 ~g~~gVivG~Al~~~~g~~~~~~~~~  305 (316)
                       ++||+.||.|-  +.  =+|.++++
T Consensus       225 -diDG~LVGgAs--L~--~~F~~ii~  245 (248)
T 1o5x_A          225 -DIDGFLVGNAS--LK--ESFVDIIK  245 (248)
T ss_dssp             -TCCEEEECGGG--GS--TTHHHHHH
T ss_pred             -CCCeeEeeHHH--HH--HHHHHHHH
Confidence             59999999999  76  35666654

>3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A*

Probab=92.11  E-value=2.7  Score=38.71  Aligned_cols=156  Identities=16%  Similarity=0.113  Sum_probs=94.3

Q ss_pred             CCCc--EEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCe-eEEEeCCcc
Q 021156          132 YPGG--LQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGK-YAIVTDRWQ  208 (316)
Q Consensus       132 ~~~p--l~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~-~~v~~~gw~  208 (316)
                      ..+|  +..+=|-..+.+++++++|.+.|.++...+.- +-|.+..+++++...+-.+.+-.-+=..+|. --+.... .
T Consensus        73 ~~VPValHLDHg~~~e~~~~ai~~GFtSVMiDgS~~p~-eeNi~~Tk~vv~~ah~~gvsVEaELG~igG~Ed~~~~~~-~  150 (307)
T 3n9r_A           73 PHIPVALHLDHGTTFESCEKAVKAGFTSVMIDASHHAF-EENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDE-K  150 (307)
T ss_dssp             TTSCEEEEEEEECSHHHHHHHHHHTCSEEEECCTTSCH-HHHHHHHHHHHHHHHHTTCEEEEEESCCCCC----------
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHhCCCcEEEECCCCCH-HHHHHHHHHHHHHHHHcCCeEEEEeeeeccccCCccccc-c
Confidence            4455  45666766799999999999999997665421 0025566666554321112222221000111 0000000 0


Q ss_pred             eecccCHHHHHHHHHHcCCCEEEEeecCCccccC-----CCCHHHHHHHhhcCCCcEEEEeCC-----------------
Q 021156          209 KFSDVYLDERVLDFLASYADEFLVHGVDVEGKKL-----GIDDELVALLGKYSPIPVTYAGGV-----------------  266 (316)
Q Consensus       209 ~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~-----G~d~eli~~l~~~~~iPVIasGGI-----------------  266 (316)
                      +..--++.+..+...+.|++.+-+.-=+.-|.+.     ..|++.++++.+.+++|+..-||=                 
T Consensus       151 ~~~yT~Peea~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~Ld~~~L~~I~~~~~~PLVlHGgS~vp~~~~~~~~~~gg~~  230 (307)
T 3n9r_A          151 DAVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVLHGASAIPDNVRKSYLDAGGDL  230 (307)
T ss_dssp             -CCSCCHHHHHHHHHHHCCSEEEECSSCCSSSBCCSSSCCCCHHHHHHHHHHHCSCEEESSCCCCCHHHHHHHHHTTCCC
T ss_pred             cccCCCHHHHHHHHHHHCCCEEEEecCCcccccCCCCCCccCHHHHHHHHhcCCCCeEEeCCCCcchHHHHHHHHhcCcc
Confidence            0011257777777778999987543334456654     249999999987788999999965                 


Q ss_pred             -----CCHHHHHHHHHhCCCcCEEEEccch
Q 021156          267 -----TTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       267 -----~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                           .+.++++++.+.|  +..+=|++-+
T Consensus       231 ~~~~G~p~e~i~~ai~~G--V~KiNi~Tdl  258 (307)
T 3n9r_A          231 KGSKGVPFEFLQESVKGG--INKVNTDTDL  258 (307)
T ss_dssp             TTCBCCCHHHHHHHHHTT--EEEEEECHHH
T ss_pred             CCCCCCCHHHHHHHHHcC--ceEEEechHH
Confidence                 3457788888888  8888888765

>2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A*

Probab=91.90  E-value=2.4  Score=39.39  Aligned_cols=159  Identities=12%  Similarity=0.082  Sum_probs=98.1

Q ss_pred             HHHHHh-CCCc--EEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCe-eE
Q 021156          126 IEALHA-YPGG--LQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGK-YA  201 (316)
Q Consensus       126 ~~~v~~-~~~p--l~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~-~~  201 (316)
                      ....+. ..+|  +..+=|-..+.+++.+++|.+.|.++...+.- +-|.+..+++++...+-.+.+-.-+=..+|. --
T Consensus        67 ~~aa~~~~~VPValHlDHg~~~e~i~~ai~~GFtSVMiDgS~~p~-eENi~~Tk~vv~~ah~~gvsVEaELG~vgg~Ed~  145 (323)
T 2isw_A           67 EAALEKHPDIPICIHLDHGDTLESVKMAIDLGFSSVMIDASHHPF-DENVRITKEVVAYAHARSVSVEAELGTLGGIEED  145 (323)
T ss_dssp             HHHHHHCTTSCEEEEEEEECSHHHHHHHHHTTCSEEEECCTTSCH-HHHHHHHHHHHHHHHTTTCEEEEEESCC------
T ss_pred             HHHHHhcCCCcEEEECCCCCCHHHHHHHHHcCCCeEEecCCCCCH-HHHHHHHHHHHHHHHHcCCeEEEEeCCccCCccC
Confidence            333444 4455  56677766799999999999999997654421 0025666666655422222232222100110 00


Q ss_pred             EEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccC--C-----CCHHHHHHHhhcCCCcEEEEeCC--------
Q 021156          202 IVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKL--G-----IDDELVALLGKYSPIPVTYAGGV--------  266 (316)
Q Consensus       202 v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~--G-----~d~eli~~l~~~~~iPVIasGGI--------  266 (316)
                      +  .  .+..--++.+..+...+.|++.+-+.-=+.-|.+.  |     .|++.++++.+.+++|+..-||=        
T Consensus       146 v--~--~~~~yTdPeea~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~L~~~~L~~I~~~~~vpLVlHGgSsvp~~~~~  221 (323)
T 2isw_A          146 V--Q--NTVQLTEPQDAKKFVELTGVDALAVAIGTSHGAYKFKSESDIRLAIDRVKTISDLTGIPLVMHGSSSVPKDVKD  221 (323)
T ss_dssp             --------CCCCCHHHHHHHHHHHCCSEEEECSSCCSSSBCCCC----CCCCHHHHHHHHHHCSCEEECSCCCCCHHHHH
T ss_pred             c--c--cccccCCHHHHHHHHHHHCCCEEEEecCccccccCCCCCcccccCHHHHHHHHHHhCCCeEEECCCCCCHHHHH
Confidence            1  0  01111367777788888999977543334456554  3     57899999998889999999954        


Q ss_pred             --------------CCHHHHHHHHHhCCCcCEEEEccch
Q 021156          267 --------------TTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       267 --------------~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                                    .+.++++++.+.|  +..+=|++-+
T Consensus       222 ~~~~~gg~~~~~~Gvp~e~i~~ai~~G--V~KiNi~Tdl  258 (323)
T 2isw_A          222 MINKYGGKMPDAVGVPIESIVHAIGEG--VCKINVDSDS  258 (323)
T ss_dssp             HHHHTTCCCTTCBCCCHHHHHHHHHTT--EEEEEECHHH
T ss_pred             HHHHhccccccCCCCCHHHHHHHHHCC--CeEEEEChHH
Confidence                          2347788888888  8888888765

>3krs_A Triosephosphate isomerase; ssgcid, SBRI, emerald biostructures, university of washingto niaid, I structural genomics; 1.55A {Cryptosporidium parvum iowa II}

Probab=91.86  E-value=0.58  Score=42.51  Aligned_cols=142  Identities=10%  Similarity=0.080  Sum_probs=80.5

Q ss_pred             HHHHHHHcCCCEEEeCCeeecC--CCCCHHHHHHHHHHhcC-ceEEEeeeeeecCCeeEEEeCCcceecccCHHHH-HHH
Q 021156          146 NSLSYIEEGATHVIVTSYVFNN--GQMDLERLKDLVRVVGK-QRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDER-VLD  221 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~~~~~--~~~~~eli~ei~~~~G~-~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~-a~~  221 (316)
                      ....+.++||+.|+||=.-++.  ++.|...-+++....-. =..++++.=...           ....+ ...+. ..+
T Consensus       102 S~~mLkd~G~~~ViiGHSERR~~f~Etde~v~~Kv~~Al~~GL~pIlCVGEtle-----------ere~g-~t~~vv~~Q  169 (271)
T 3krs_A          102 SCEMLKDMDVDCSLVGHSERRQYYSETDQIVNNKVKKGLENGLKIVLCIGESLS-----------ERETG-KTNDVIQKQ  169 (271)
T ss_dssp             CHHHHHHTTCCEEEESCHHHHHHSCCCHHHHHHHHHHHHHTTCEEEEEECCCHH-----------HHHTT-CHHHHHHHH
T ss_pred             cHHHHHHcCCCEEEECchhhccccCCCHHHHHHHHHHHHHCCCeEEEEeCCcHH-----------HHHCC-CHHHHHHHH
Confidence            3778889999999999754432  33333333444433311 245666642100           00011 11222 222


Q ss_pred             HHHc--CC---CE--EEEeecCCccccCCCCHHHHHHH----hhc----------CCCcEEEEeCCCCHHHHHHHHHhCC
Q 021156          222 FLAS--YA---DE--FLVHGVDVEGKKLGIDDELVALL----GKY----------SPIPVTYAGGVTTMADLEKIKVAGI  280 (316)
Q Consensus       222 ~~~~--Ga---~~--ilvtdi~~dG~~~G~d~eli~~l----~~~----------~~iPVIasGGI~s~eDi~~l~~~G~  280 (316)
                      +...  ++   ..  |-|-.+..-||..-...+.+.++    ++.          -.++|+|+|+|..-+. .+++... 
T Consensus       170 l~~~l~~v~~~~~~vIAYEPvWAIGTG~tAtpe~aqevh~~IR~~l~~~~~~~~a~~vrILYGGSV~~~N~-~el~~~~-  247 (271)
T 3krs_A          170 LTEALKDVSDLSNLVIAYEPIWAIGTGVVATPGQAQEAHAFIREYVTRMYNPQVSSNLRIIYGGSVTPDNC-NELIKCA-  247 (271)
T ss_dssp             HHHHTTTCCCCTTEEEEECCGGGSSSSCCCCHHHHHHHHHHHHHHHHHHSCHHHHHHCCEEECSCCCTTTH-HHHHHST-
T ss_pred             HHHHHhchHhhcCEEEEECChhhhcCCCCCCHHHHHHHHHHHHHHHHHhcChhhcCCccEEEcCCcCHHHH-HHHhcCC-
Confidence            2221  22   22  33677888898877655543332    221          1479999999988654 4455443 


Q ss_pred             CcCEEEEccchhhccCcccHHHHHH
Q 021156          281 GRVDVTVGSALDIFGGNLAYKDVVA  305 (316)
Q Consensus       281 g~~gVivG~Al~~~~g~~~~~~~~~  305 (316)
                      ++||+.||.|-  +. + .|-++.+
T Consensus       248 diDG~LVGgAS--L~-~-~F~~Ii~  268 (271)
T 3krs_A          248 DIDGFLVGGAS--LK-P-TFAKIIE  268 (271)
T ss_dssp             TCCEEEESGGG--GS-T-THHHHHH
T ss_pred             CCCEEEeeHHh--hh-H-HHHHHHH
Confidence            49999999999  87 5 7777764

>1dbt_A Orotidine 5'-phosphate decarboxylase; UMP, TIM barrel, lyase; HET: U5P; 2.40A {Bacillus subtilis} SCOP: c.1.2.3

Probab=91.77  E-value=1.8  Score=38.05  Aligned_cols=148  Identities=12%  Similarity=0.057  Sum_probs=78.1

Q ss_pred             HHHHHHhCCCcEEEecCCC--HH----HHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHh---cCc-eEEEeeeee
Q 021156          125 AIEALHAYPGGLQVGGGIN--SD----NSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVV---GKQ-RLVLDLSCR  194 (316)
Q Consensus       125 i~~~v~~~~~pl~vGGGIr--~e----~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~---G~~-~IvvslD~k  194 (316)
                      +++.+++.+.++..+--.-  .+    -++.+.++|||.|.+-...-.+   ..+.+.+..+++   |.. ...+.+...
T Consensus        46 ~v~~l~~~~~~v~lD~kl~Dip~t~~~~~~~~~~~Gad~vtvH~~~g~~---~l~~~~~~~~~~~~~g~~~~~~~~V~~~  122 (239)
T 1dbt_A           46 IVKQLKERNCELFLDLKLHDIPTTVNKAMKRLASLGVDLVNVHAAGGKK---MMQAALEGLEEGTPAGKKRPSLIAVTQL  122 (239)
T ss_dssp             HHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTTTCSEEEEEGGGCHH---HHHHHHHHHHHHSCTTSCCCEEEEECSC
T ss_pred             HHHHHHHCCCcEEEEeccccchHHHHHHHHHHHhcCCCEEEEeCcCCHH---HHHHHHHHHHhhhccCCCCccEEEEEEc
Confidence            4445554444455554442  22    4667888999999886654322   012233334445   643 113445443


Q ss_pred             ecCCeeEEEeCCc-cee-cccCHHHHH----HHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcC-CCcEEEEeCCC
Q 021156          195 KKDGKYAIVTDRW-QKF-SDVYLDERV----LDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYS-PIPVTYAGGVT  267 (316)
Q Consensus       195 ~~~g~~~v~~~gw-~~~-~~~~~~e~a----~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~-~iPVIasGGI~  267 (316)
                      ....     ...+ ++. ...+..+.+    ....+.|.+.++...            +.++++++.. +.++++.|||+
T Consensus       123 ts~~-----~~~l~~~~~~~~~~~d~Vl~ma~~~~~~G~~g~v~~~------------~~i~~lr~~~~~~~i~v~gGI~  185 (239)
T 1dbt_A          123 TSTS-----EQIMKDELLIEKSLIDTVVHYSKQAEESGLDGVVCSV------------HEAKAIYQAVSPSFLTVTPGIR  185 (239)
T ss_dssp             TTCC-----HHHHHHTSCBCSCHHHHHHHHHHHHHHTTCSEEECCG------------GGHHHHTTTSCTTCEEEECCBC
T ss_pred             CCCC-----HHHHHHHhccCCCHHHHHHHHHHHHHHhCCCEEEECH------------HHHHHHHHhcCCCcEEEeCCcC
Confidence            1000     0001 000 000223332    223566777654221            1244565544 36899999998


Q ss_pred             CHHH----------HHHHHHhCCCcCEEEEccchhhccC
Q 021156          268 TMAD----------LEKIKVAGIGRVDVTVGSALDIFGG  296 (316)
Q Consensus       268 s~eD----------i~~l~~~G~g~~gVivG~Al~~~~g  296 (316)
                      ....          ..++.+.|  ++.+++||++  |..
T Consensus       186 ~~~~~~~dq~rv~tp~~a~~aG--ad~iVvGr~I--~~a  220 (239)
T 1dbt_A          186 MSEDAANDQVRVATPAIAREKG--SSAIVVGRSI--TKA  220 (239)
T ss_dssp             CTTSCCTTCSSCBCHHHHHHTT--CSEEEECHHH--HTS
T ss_pred             CCCCCccceeccCCHHHHHHcC--CCEEEEChhh--cCC
Confidence            7543          37778888  8999999999  753

>2chr_A Chloromuconate cycloisomerase; 3.00A {Cupriavidus necator} SCOP: c.1.11.2 d.54.1.1

Probab=91.72  E-value=1.2  Score=41.59  Aligned_cols=138  Identities=11%  Similarity=0.082  Sum_probs=90.6

Q ss_pred             HHHHHHcCCC--EEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHH
Q 021156          147 SLSYIEEGAT--HVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLA  224 (316)
Q Consensus       147 ~~~~l~~Gad--~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~  224 (316)
                      ++.+.+.|..  ++=+|.....+   +.+.++.+.+.+| ..+-+.+|+   |       .+|...   +..++++.+.+
T Consensus       151 ~~~~~~~g~~~~K~Kvg~~~~~~---d~~~v~avr~~~g-~~~~l~vDa---N-------~~~~~~---~A~~~~~~l~~  213 (370)
T 2chr_A          151 VEMIERRRHNRFKVKLGFRSPQD---DLIHMEALSNSLG-SKAYLRVDV---N-------QAWDEQ---VASVYIPELEA  213 (370)
T ss_dssp             HHHHHTTSCCEEEEECSSSCHHH---HHHHHHHHHHHTT-TTSEEEEEC---T-------TCCCTH---HHHHHHHHHHT
T ss_pred             HHHHhhcccceeecccccCChHH---HHHHHHHHHHhcC-CCcEEEecC---C-------CCCCHH---HHHHHHHHHHh
Confidence            3444556665  45556433222   2678888888897 456788887   3       356432   35678888888


Q ss_pred             cCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHH
Q 021156          225 SYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVV  304 (316)
Q Consensus       225 ~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~  304 (316)
                      .++..+  =     .=...-|++.++++++.+++||.+.=-+.+..|+.++.+.+ .++.+.+--+-  .+|-....++.
T Consensus       214 ~~~~~i--E-----eP~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~~~~~-a~d~i~~d~~~--~GGit~~~~ia  283 (370)
T 2chr_A          214 LGVELI--E-----QPVGRENTQALRRLSDNNRVAIMADESLSTLASAFDLARDR-SVDVFSLKLCN--MGGVSATQKIA  283 (370)
T ss_dssp             TTCCEE--E-----CCSCSSCHHHHHHHHHHCSSEEEESSSCCSHHHHHHHHTTT-CCSEECCCHHH--HTSHHHHHHHH
T ss_pred             cCCcee--c-----CCCChhhhhhhhHHhhhccCCccCCccCCCHHHHHHHHHcC-CCcEEEeCCcc--cCCHHHHHHHH
Confidence            877643  1     11122388999999999999998888899999999999987 35555554444  45544455555


Q ss_pred             HHHHhhc
Q 021156          305 AWHAQQE  311 (316)
Q Consensus       305 ~~~~~~~  311 (316)
                      ++++++.
T Consensus       284 ~~A~~~g  290 (370)
T 2chr_A          284 AVAEASG  290 (370)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHcC
Confidence            5555543

>2yc6_A Triosephosphate isomerase; glycolysis; HET: PGA; 1.45A {Giardia intestinalis} PDB: 2dp3_A 2yc7_A* 3pf3_A 2yc8_A

Probab=91.65  E-value=1  Score=40.62  Aligned_cols=148  Identities=15%  Similarity=0.094  Sum_probs=85.5

Q ss_pred             HHHHHHHcCCCEEEeCCeeecC--CCCCHHHHHHHHHHh--cCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHH-H
Q 021156          146 NSLSYIEEGATHVIVTSYVFNN--GQMDLERLKDLVRVV--GKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERV-L  220 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~~~~~--~~~~~eli~ei~~~~--G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a-~  220 (316)
                      ....+.++||+.|+||=.-++.  ++.|...-+++....  | =..++++.=...     -+-.|-..  . -+.... .
T Consensus        80 S~~mL~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~G-L~pI~CvGEtle-----ere~g~t~--~-vv~~Ql~~  150 (257)
T 2yc6_A           80 SVEMLQDMGLKHVIVGHSERRRIMGETDEQSAKKAKRALEKG-MTVIFCVGETLD-----ERKANRTM--E-VNIAQLEA  150 (257)
T ss_dssp             CHHHHHHTTCCEEEESCHHHHHTSCCCHHHHHHHHHHHHHTT-CEEEEEECCCHH-----HHHTTCHH--H-HHHHHHHH
T ss_pred             CHHHHHHcCCCEEEECchhhccccCCCHHHHHHHHHHHHHCC-CEEEEEcCCcHH-----HHhcCCHH--H-HHHHHHHH
Confidence            3778889999999999764432  343333333333333  2 345666642100     00001000  0 011111 1


Q ss_pred             HHHHc-CCC------EEEEeecCCccccCCCCHHHHHHH----hhc----------CCCcEEEEeCCCCHHHHHHHHHhC
Q 021156          221 DFLAS-YAD------EFLVHGVDVEGKKLGIDDELVALL----GKY----------SPIPVTYAGGVTTMADLEKIKVAG  279 (316)
Q Consensus       221 ~~~~~-Ga~------~ilvtdi~~dG~~~G~d~eli~~l----~~~----------~~iPVIasGGI~s~eDi~~l~~~G  279 (316)
                      .+... ..+      -|-|-.+..-||..-...+.++++    ++.          -+++|+++|+|..- ++.+++.+.
T Consensus       151 ~l~~~~~~~~~~~~vvIAYEPvWAIGTG~~Atpe~aqevh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~-N~~~l~~~~  229 (257)
T 2yc6_A          151 LGKELGESKMLWKEVVIAYEPVWSIGTGVVATPEQAEEVHVGLRKWFVEKVAAEGAQHIRIIYGGSANGS-NNEKLGQCP  229 (257)
T ss_dssp             HHHHHTTCHHHHHTEEEEECCGGGTTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEESSCCTT-THHHHHTST
T ss_pred             HHhcCCChhhccCCEEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcChhhcccceEEEcCccCHH-HHHHHHcCC
Confidence            12222 323      244788889999877766544332    221          26899999999886 899999885


Q ss_pred             CCcCEEEEccchhhccCcccHHHHHHHHH
Q 021156          280 IGRVDVTVGSALDIFGGNLAYKDVVAWHA  308 (316)
Q Consensus       280 ~g~~gVivG~Al~~~~g~~~~~~~~~~~~  308 (316)
                       ++||+.||.|-  +.-.  |.++++...
T Consensus       230 -diDG~LVGgAs--L~a~--F~~Ii~~~~  253 (257)
T 2yc6_A          230 -NIDGFLVGGAS--LKPE--FMTMIDILT  253 (257)
T ss_dssp             -TCCEEEESGGG--GSTH--HHHHHHHHH
T ss_pred             -CCCeeeecHHH--HHHH--HHHHHHHHH
Confidence             59999999999  7644  667766443

>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A

Probab=91.60  E-value=1  Score=40.47  Aligned_cols=88  Identities=19%  Similarity=0.167  Sum_probs=65.4

Q ss_pred             HHHHHHHHHcCCCEE-EEeecCCccccCCCCHHHHHHHhhcCCCcEEEE----eC-C-CCH-------HHHHHHHHhCCC
Q 021156          216 DERVLDFLASYADEF-LVHGVDVEGKKLGIDDELVALLGKYSPIPVTYA----GG-V-TTM-------ADLEKIKVAGIG  281 (316)
Q Consensus       216 ~e~a~~~~~~Ga~~i-lvtdi~~dG~~~G~d~eli~~l~~~~~iPVIas----GG-I-~s~-------eDi~~l~~~G~g  281 (316)
                      .+-+..+++.|+++| |+.+....|+  -|.+.+++.+++.+++||.+-    || . -|.       +|+..++++|  
T Consensus        11 ~~~a~~A~~~GAdRIELc~~L~~GGl--TPS~g~i~~~~~~~~ipv~vMIRPR~GdF~Ys~~E~~~M~~Di~~~~~~G--   86 (256)
T 1twd_A           11 MECALTAQQNGADRVELCAAPKEGGL--TPSLGVLKSVRQRVTIPVHPIIRPRGGDFCYSDGEFAAILEDVRTVRELG--   86 (256)
T ss_dssp             HHHHHHHHHTTCSEEEECBCGGGTCB--CCCHHHHHHHHHHCCSCEEEBCCSSSSCSCCCHHHHHHHHHHHHHHHHTT--
T ss_pred             HHHHHHHHHcCCCEEEEcCCcccCCC--CCCHHHHHHHHHHcCCceEEEECCCCCCCcCCHHHHHHHHHHHHHHHHcC--
Confidence            567888999999998 4465654443  478999999988889998762    33 2 232       3777788888  


Q ss_pred             cCEEEEccchhhccCcccHHHHHHHHHh
Q 021156          282 RVDVTVGSALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       282 ~~gVivG~Al~~~~g~~~~~~~~~~~~~  309 (316)
                      ++|+++|---  -.|.++.+.+.++...
T Consensus        87 adGvV~G~Lt--~dg~iD~~~~~~Li~~  112 (256)
T 1twd_A           87 FPGLVTGVLD--VDGNVDMPRMEKIMAA  112 (256)
T ss_dssp             CSEEEECCBC--TTSSBCHHHHHHHHHH
T ss_pred             CCEEEEeeEC--CCCCcCHHHHHHHHHH
Confidence            9999999766  6788888777776544

>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}

Probab=91.56  E-value=0.87  Score=41.90  Aligned_cols=68  Identities=13%  Similarity=0.146  Sum_probs=50.3

Q ss_pred             HHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhc--CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhh
Q 021156          216 DERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKY--SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDI  293 (316)
Q Consensus       216 ~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~--~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~  293 (316)
                      ++.++++.+.|++.|.+-.         ++.+.+++..+.  .++.+.+|||| +++.+.++.+.|  +|.+.+|+..  
T Consensus       217 l~e~~eAl~aGaDiImLDn---------~s~~~l~~av~~~~~~v~leaSGGI-t~~~i~~~A~tG--VD~IsvGalt--  282 (300)
T 3l0g_A          217 ISQVEESLSNNVDMILLDN---------MSISEIKKAVDIVNGKSVLEVSGCV-NIRNVRNIALTG--VDYISIGCIT--  282 (300)
T ss_dssp             HHHHHHHHHTTCSEEEEES---------CCHHHHHHHHHHHTTSSEEEEESSC-CTTTHHHHHTTT--CSEEECGGGT--
T ss_pred             HHHHHHHHHcCCCEEEECC---------CCHHHHHHHHHhhcCceEEEEECCC-CHHHHHHHHHcC--CCEEEeCccc--
Confidence            4778888899999877633         334555555432  26789999999 568899999988  9999999776  


Q ss_pred             ccCc
Q 021156          294 FGGN  297 (316)
Q Consensus       294 ~~g~  297 (316)
                      |.-+
T Consensus       283 hsa~  286 (300)
T 3l0g_A          283 NSFQ  286 (300)
T ss_dssp             SSCC
T ss_pred             cCCC
Confidence            5443

>3ik4_A Mandelate racemase/muconate lactonizing protein; structural genomics, enolase, epimerase, PSI-2, protein STRU initiative; 2.10A {Herpetosiphon aurantiacus atcc 23779}

Probab=91.47  E-value=2  Score=40.32  Aligned_cols=138  Identities=13%  Similarity=0.045  Sum_probs=87.6

Q ss_pred             HHHHHHHHcCCC--EEEeCCe-eecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHH
Q 021156          145 DNSLSYIEEGAT--HVIVTSY-VFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLD  221 (316)
Q Consensus       145 e~~~~~l~~Gad--~VVigt~-~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~  221 (316)
                      ++++++.+.|..  |+=+|.. ...+    .+.++.+.+.+| + +.+.+|.   |+       +|...   +..++++.
T Consensus       149 ~~a~~~~~~G~~~iK~Kvg~~~~~~d----~~~v~avr~~~~-~-~~l~vDa---N~-------~~~~~---~A~~~~~~  209 (365)
T 3ik4_A          149 ASAKAILARGIKSIKVKTAGVDVAYD----LARLRAIHQAAP-T-APLIVDG---NC-------GYDVE---RALAFCAA  209 (365)
T ss_dssp             HHHHHHHHTTCCCEEEECCSSCHHHH----HHHHHHHHHHSS-S-CCEEEEC---TT-------CCCHH---HHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEEEeCCCCHHHH----HHHHHHHHHhCC-C-CeEEEEC---CC-------CCCHH---HHHHHHHH
Confidence            346777888866  4556654 3343    889999999885 4 4678887   33       56432   35567777


Q ss_pred             HHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHH
Q 021156          222 FLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYK  301 (316)
Q Consensus       222 ~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~  301 (316)
                      +.+...+-..+-.     =....|++.++++++.+++||.+.--+.+..|+.++++.+ .++.+.+ +..  .+|-....
T Consensus       210 L~~~~~~i~~iEe-----P~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~-a~d~v~i-k~~--~GGit~~~  280 (365)
T 3ik4_A          210 CKAESIPMVLFEQ-----PLPREDWAGMAQVTAQSGFAVAADESARSAHDVLRIAREG-TASVINI-KLM--KAGVAEGL  280 (365)
T ss_dssp             HHHTTCCEEEEEC-----CSCTTCHHHHHHHHHHSSSCEEESTTCSSHHHHHHHHHHT-CCSEEEE-CHH--HHCHHHHH
T ss_pred             HhhCCCCceEEEC-----CCCcccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhC-CCCEEEE-cCC--ccCHHHHH
Confidence            7333333222221     1122389999999988999999999999999999999988 2554444 444  33433344


Q ss_pred             HHHHHHHhh
Q 021156          302 DVVAWHAQQ  310 (316)
Q Consensus       302 ~~~~~~~~~  310 (316)
                      ++.++++++
T Consensus       281 ~i~~~A~~~  289 (365)
T 3ik4_A          281 KMIAIAQAA  289 (365)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHc
Confidence            444454443

>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii}

Probab=91.33  E-value=0.15  Score=47.56  Aligned_cols=43  Identities=16%  Similarity=0.231  Sum_probs=35.0

Q ss_pred             HHHHHHH-hCCCcE--EEecCCC-HHHHHHHHHcCCCEEEeCCeeec
Q 021156          124 AAIEALH-AYPGGL--QVGGGIN-SDNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus       124 ~i~~~v~-~~~~pl--~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      .+++.++ ...+|+  ..-|||. .+++..++++|||.|.||++.+.
T Consensus       230 ell~~i~~~~~IPVV~VAeGGI~Tpeda~~~l~~GaDgV~VGsaI~~  276 (330)
T 2yzr_A          230 EVLLEVKKLGRLPVVNFAAGGVATPADAALMMQLGSDGVFVGSGIFK  276 (330)
T ss_dssp             HHHHHHHHHTSCSSEEEECSCCCSHHHHHHHHHTTCSCEEESHHHHT
T ss_pred             HHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHcCcCEEeeHHHHhc
Confidence            3444444 477888  5899997 69999999999999999999973

>4h1z_A Enolase Q92ZS5; dehydratase, magnesium binding site, enzyme function initiat isomerase; 2.01A {Sinorhizobium meliloti} PDB: 2ppg_A

Probab=91.29  E-value=1  Score=43.06  Aligned_cols=137  Identities=9%  Similarity=-0.053  Sum_probs=86.9

Q ss_pred             HHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHc
Q 021156          146 NSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLAS  225 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~  225 (316)
                      .++.+.+.|...+=+..-...  +-+.+.++.+.+.+|+ .+-+.+|+.          .+|...   +...+++.+.+.
T Consensus       195 ~a~~~~~~G~~~~K~k~g~~~--~~~~~~v~~vR~~~g~-~~~l~vDaN----------~~~~~~---~A~~~~~~l~~~  258 (412)
T 4h1z_A          195 LAAAWQAKGFSSFKFASPVAD--DGVAKEMEILRERLGP-AVRIACDMH----------WAHTAS---EAVALIKAMEPH  258 (412)
T ss_dssp             HHHHHHHTTCCEEEEEGGGCT--TCHHHHHHHHHHHHCS-SSEEEEECC----------SCCCHH---HHHHHHHHHGGG
T ss_pred             HHHHHHhcCcceeccccccch--hhHHHHHHHHHhccCC-eEEEEeccc----------cCCCHH---HHHHHHHhhccc
Confidence            356677889887655432211  1136778888888974 566788873          356432   356777888877


Q ss_pred             CCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156          226 YADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVA  305 (316)
Q Consensus       226 Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~  305 (316)
                      ++..+       +.=...-|++.++++++.+++||.+.=-+.+..|+.++++.+  +..++.=..-  ..|-....++.+
T Consensus       259 ~l~~i-------EqP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~--a~div~~d~~--~GGit~~~kia~  327 (412)
T 4h1z_A          259 GLWFA-------EAPVRTEDIDGLARVAASVSTAIAVGEEWRTVHDMVPRVARR--ALAIVQPEMG--HKGITQFMRIGA  327 (412)
T ss_dssp             CEEEE-------ECCSCTTCHHHHHHHHHHCSSEEEECTTCCSHHHHHHHHHTT--CCSEECCCHH--HHHHHHHHHHHH
T ss_pred             cccee-------cCCCCccchHHHHHHHhhcCCccccCCcccchHhHHHHHHcC--CCCEEEecCC--CCChHHHHHHHH
Confidence            75422       111223389999999999999998888899999999999988  3334433333  344223334444


Q ss_pred             HHHh
Q 021156          306 WHAQ  309 (316)
Q Consensus       306 ~~~~  309 (316)
                      .+.+
T Consensus       328 ~A~~  331 (412)
T 4h1z_A          328 YAHV  331 (412)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4444

>3qld_A Mandelate racemase/muconate lactonizing protein; structural genomics, PSI-2, isomerase; HET: MSE; 1.85A {Alicyclobacillus acidocaldarius LAA1}

Probab=91.21  E-value=2.6  Score=39.82  Aligned_cols=136  Identities=15%  Similarity=0.026  Sum_probs=88.9

Q ss_pred             HHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHH
Q 021156          145 DNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLA  224 (316)
Q Consensus       145 e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~  224 (316)
                      ++++++.+.|...+=+--....    +.+.++.+.+.+ ++ +.+.+|+.          .+|...   +... ++.+.+
T Consensus       155 ~~~~~~~~~G~~~~K~Kv~~~~----d~~~v~avR~~~-~~-~~l~vDaN----------~~~~~~---~A~~-~~~l~~  214 (388)
T 3qld_A          155 QSVDAAVEQGFRRVKLKIAPGR----DRAAIKAVRLRY-PD-LAIAADAN----------GSYRPE---DAPV-LRQLDA  214 (388)
T ss_dssp             HHHHHHHHTTCSEEEEECBTTB----SHHHHHHHHHHC-TT-SEEEEECT----------TCCCGG---GHHH-HHHGGG
T ss_pred             HHHHHHHHhCCCeEEEEeCcHH----HHHHHHHHHHHC-CC-CeEEEECC----------CCCChH---HHHH-HHHHhh
Confidence            4567778889875433211223    489999999998 44 67888973          356532   2333 666666


Q ss_pred             cCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHH
Q 021156          225 SYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVV  304 (316)
Q Consensus       225 ~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~  304 (316)
                      .++..+       +.=....|++.++++++.+++||.+.=-+.+..|+.++++.+ .++.+.+--+-  .+|--...++.
T Consensus       215 ~~i~~i-------EeP~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~~~~~-a~d~v~~k~~~--~GGit~~~~ia  284 (388)
T 3qld_A          215 YDLQFI-------EQPLPEDDWFDLAKLQASLRTPVCLDESVRSVRELKLTARLG-AARVLNVKPGR--LGGFGATLRAL  284 (388)
T ss_dssp             GCCSCE-------ECCSCTTCHHHHHHHHHHCSSCEEESTTCCSHHHHHHHHHHT-CCSEEEECHHH--HTSHHHHHHHH
T ss_pred             CCCcEE-------ECCCCcccHHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcC-CCCEEEECchh--hCCHHHHHHHH
Confidence            665422       111223378999999998899988877889999999999987 36666665555  55544445555


Q ss_pred             HHHHhh
Q 021156          305 AWHAQQ  310 (316)
Q Consensus       305 ~~~~~~  310 (316)
                      ++++++
T Consensus       285 ~~A~~~  290 (388)
T 3qld_A          285 DVAGEA  290 (388)
T ss_dssp             HHHHHT
T ss_pred             HHHHHC
Confidence            555554

>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*

Probab=91.10  E-value=0.27  Score=56.25  Aligned_cols=74  Identities=11%  Similarity=0.029  Sum_probs=55.5

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCC----ccc-------HHHHHHHHH-hCCCcEEEecCCCH-HHHHHHH---------
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGAD----PLS-------KAAAIEALH-AYPGGLQVGGGINS-DNSLSYI---------  151 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~----~~~-------~~~i~~~v~-~~~~pl~vGGGIr~-e~~~~~l---------  151 (316)
                      +..+.+..+.++|++.+.++...+.    ...       ...++..++ .+++|++++|||.+ +++.+++         
T Consensus       704 ~a~~~v~~l~~aG~D~iV~~q~~G~eaGGH~g~~d~~~~~l~lv~~i~~~~~ipviaaGGI~~g~~i~aaltg~ws~~~g  783 (2060)
T 2uva_G          704 DAIQQVINIAKANPTFPIILQWTGGRGGGHHSFEDFHQPILLMYSRIRKCSNIVLVAGSGFGGSEDTYPYLTGSWSTKFG  783 (2060)
T ss_dssp             HHHHHHHHHHHHCTTSCEEEEECCTTSSSSCCSCCSHHHHHHHHHHHHTSTTEEEEEESSCCSHHHHHHHHHTCGGGTTT
T ss_pred             HHHHHHHHHHHcCCCEEEEeeeEcccCCCCCCcccccchHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHhcCcchhhcC
Confidence            3445555678899999998887753    111       122344444 57899999999985 9999999         


Q ss_pred             --HcCCCEEEeCCeeecC
Q 021156          152 --EEGATHVIVTSYVFNN  167 (316)
Q Consensus       152 --~~Gad~VVigt~~~~~  167 (316)
                        .+|||-|.+||.+...
T Consensus       784 ~palGAdgV~~GT~f~~t  801 (2060)
T 2uva_G          784 YPPMPFDGCMFGSRMMTA  801 (2060)
T ss_dssp             SCCCCCSCEEESGGGGGB
T ss_pred             CCCCCCCEEEEchhhhcC
Confidence              9999999999998865

>4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis}

Probab=90.94  E-value=0.25  Score=46.60  Aligned_cols=82  Identities=6%  Similarity=0.023  Sum_probs=56.0

Q ss_pred             HHHHHHHHcCCCcceEEEec--CC--cccHHHHHHHHH-hCCCcEEEecCCCHHHHHHHHHcC-CCEEEeCCeeecCCCC
Q 021156           97 EFANLYKEDGLTGGHAIMLG--AD--PLSKAAAIEALH-AYPGGLQVGGGINSDNSLSYIEEG-ATHVIVTSYVFNNGQM  170 (316)
Q Consensus        97 e~a~~~~~~G~~~l~lvDLd--a~--~~~~~~i~~~v~-~~~~pl~vGGGIr~e~~~~~l~~G-ad~VVigt~~~~~~~~  170 (316)
                      .+++.+.+.|++.+++..=.  ..  ......+.+.++ ....|+.+||+...+.++++++.| ||.|.+|-.++.|   
T Consensus       245 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~ik~~~~~~v~~~g~~~~~~ae~~l~~G~aD~V~~gR~~lad---  321 (358)
T 4a3u_A          245 PAAKMLSDLDIAFLGMREGAVDGTFGKTDQPKLSPEIRKVFKPPLVLNQDYTFETAQAALDSGVADAISFGRPFIGN---  321 (358)
T ss_dssp             HHHHHHHHHTCSEEEEECCBTTCSSSBCSSCCCHHHHHHHCCSCEEEESSCCHHHHHHHHHHTSCSEEEESHHHHHC---
T ss_pred             HHHHhhhccCccccccccccccCcccccccHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHcCCceEeHhhHHHHhC---
Confidence            45666777787765554211  11  111111223333 366788887776679999999998 9999999999998   


Q ss_pred             CHHHHHHHHHHh
Q 021156          171 DLERLKDLVRVV  182 (316)
Q Consensus       171 ~~eli~ei~~~~  182 (316)
                       |++.+++.+..
T Consensus       322 -Pdlp~k~~~g~  332 (358)
T 4a3u_A          322 -PDLPRRFFEKA  332 (358)
T ss_dssp             -TTHHHHHHHTC
T ss_pred             -hhHHHHHHhCC
Confidence             99999998743

>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1

Probab=90.76  E-value=0.17  Score=46.41  Aligned_cols=67  Identities=21%  Similarity=0.145  Sum_probs=49.5

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHhC-----CCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeec
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAY-----PGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~-----~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      ++ +.++...++|++   ++.||.-  ..+.+.++++.+     .+|+.+-|||+.+.+..+.+.|+|.+.+|+....
T Consensus       202 tl-eea~eA~~aGaD---~I~LDn~--~~e~l~~av~~l~~~~~~v~ieASGGIt~eni~~~a~tGVD~IsvGslt~s  273 (285)
T 1o4u_A          202 NL-EDALRAVEAGAD---IVMLDNL--SPEEVKDISRRIKDINPNVIVEVSGGITEENVSLYDFETVDVISSSRLTLQ  273 (285)
T ss_dssp             SH-HHHHHHHHTTCS---EEEEESC--CHHHHHHHHHHHHHHCTTSEEEEEECCCTTTGGGGCCTTCCEEEEGGGTSS
T ss_pred             CH-HHHHHHHHcCCC---EEEECCC--CHHHHHHHHHHhhccCCCceEEEECCCCHHHHHHHHHcCCCEEEEeHHHcC
Confidence            55 455555667775   6777753  334454544432     6899999999999999999999999999997665

>2btm_A TIM, protein (triosephosphate isomerase); thermophilic triose-phosphate, glycolysis; 2.40A {Geobacillus stearothermophilus} SCOP: c.1.1.1 PDB: 1btm_A

Probab=90.75  E-value=1  Score=40.49  Aligned_cols=131  Identities=12%  Similarity=0.046  Sum_probs=77.7

Q ss_pred             HHHHHHHcCCCEEEeCCeeecC--CCCCHHHHHHHHHHh--cCceEEEeeeeeecCCeeEEEeCCcceecccCHHHH-HH
Q 021156          146 NSLSYIEEGATHVIVTSYVFNN--GQMDLERLKDLVRVV--GKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDER-VL  220 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~~~~~--~~~~~eli~ei~~~~--G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~-a~  220 (316)
                      ....+.++||+.|+||=.-++.  ++.|...-+++....  | =..++++.=...     -+      ..+ ...+. ..
T Consensus        78 S~~mL~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~G-L~pI~CvGEtle-----er------e~g-~t~~vv~~  144 (252)
T 2btm_A           78 SPVMLKDLGVTYVILGHSERRQMFAETDETVNKKVLAAFTRG-LIPIICCGESLE-----ER------EAG-QTNAVVAS  144 (252)
T ss_dssp             CHHHHHHHTCCEEEESCHHHHHHSCCCHHHHHHHHHHHHHHT-CEEEEEECCCHH-----HH------HTT-CHHHHHHH
T ss_pred             CHHHHHHcCCCEEEeCchhcccccCCCHHHHHHHHHHHHHCC-CEEEEEcCCcHH-----HH------hCC-CHHHHHHH
Confidence            3778889999999999764432  333333333333332  3 345666642100     00      011 11111 11


Q ss_pred             HHHH--cCC--C-----EEEEeecCCccccCCCCHHHHHH----Hhh----------cCCCcEEEEeCCCCHHHHHHHHH
Q 021156          221 DFLA--SYA--D-----EFLVHGVDVEGKKLGIDDELVAL----LGK----------YSPIPVTYAGGVTTMADLEKIKV  277 (316)
Q Consensus       221 ~~~~--~Ga--~-----~ilvtdi~~dG~~~G~d~eli~~----l~~----------~~~iPVIasGGI~s~eDi~~l~~  277 (316)
                      ++..  .++  +     -|-|-.+..-||..-...+.+.+    +++          .-+++|+++|+|.. +++.+++.
T Consensus       145 Ql~~~l~~~~~~~~~~~vIAYEPvWAIGTG~~Atpe~a~evh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~-~N~~~l~~  223 (252)
T 2btm_A          145 QVEKALAGLTPEQVKQAVIAYEPIWAIGTGKSSTPEDANSVCGHIRSVVSRLFGPEAAEAIRIQYGGSVKP-DNIRDFLA  223 (252)
T ss_dssp             HHHHHHTTCCHHHHTTCEEEECCGGGTTTSCCCCHHHHHHHHHHHHHHHHHHHCHHHHTTSEEEEESSCCT-TTHHHHHT
T ss_pred             HHHHHHhcCCHHHcCCEEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcCccccCceeEEEcCCCCH-HHHHHHHc
Confidence            2211  222  2     34578889999987776654332    222          13589999999999 99999997


Q ss_pred             hCCCcCEEEEccch
Q 021156          278 AGIGRVDVTVGSAL  291 (316)
Q Consensus       278 ~G~g~~gVivG~Al  291 (316)
                      .. ++||+.||.|-
T Consensus       224 ~~-diDG~LVGgAs  236 (252)
T 2btm_A          224 QQ-QIDGALVGGAS  236 (252)
T ss_dssp             ST-TCCEEEESGGG
T ss_pred             CC-CCCeeEecHHH
Confidence            65 69999999998

>2vxn_A Triosephosphate isomerase; fatty acid biosynthesis, transition state analogue, glycolysis, pentose shunt, gluconeogenesis, TIM, glycosome; HET: PGH PGA; 0.82A {Leishmania mexicana} PDB: 1if2_A* 1qds_A 1n55_A* 2y61_A 2y62_A 2y63_A 1amk_A 1tpf_A 1iig_A 1ag1_O* 1iih_A 1tpd_A 1trd_A* 2v5l_A 4tim_A* 5tim_A 6tim_A*

Probab=90.64  E-value=0.89  Score=40.79  Aligned_cols=141  Identities=12%  Similarity=0.076  Sum_probs=79.8

Q ss_pred             HHHHHHHcCCCEEEeCCeeecC--CCCCHHHHHHHHHHh--cCceEEEeeeeeecCCeeEEEeCCcceecccCHHHH-HH
Q 021156          146 NSLSYIEEGATHVIVTSYVFNN--GQMDLERLKDLVRVV--GKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDER-VL  220 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~~~~~--~~~~~eli~ei~~~~--G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~-a~  220 (316)
                      ....+.++||+.|+||=.-++.  ++.|...-+++....  | =..++++.=..     .-+      ..+ ...+. ..
T Consensus        80 S~~mL~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~G-L~pI~CvGEtl-----eer------e~g-~t~~vv~~  146 (251)
T 2vxn_A           80 SMPILKDIGVHWVILGHSERRTYYGETDEIVAQKVSEACKQG-FMVIACIGETL-----QQR------EAN-QTAKVVLS  146 (251)
T ss_dssp             BHHHHHHTTCCEEEESCHHHHHHSCCCHHHHHHHHHHHHHTT-CEEEEEECCCH-----HHH------HTT-CHHHHHHH
T ss_pred             CHHHHHHcCCCEEEECchhhhcccCCCHHHHHHHHHHHHHCC-CEEEEEcCCcH-----HHH------hCC-CHHHHHHH
Confidence            3778889999999999765432  343333333333333  2 34566664210     000      011 11111 22


Q ss_pred             HHHH--cCC-----CE--EEEeecCCccccCCCCHHHHHHH----h----hc------CCCcEEEEeCCCCHHHHHHHHH
Q 021156          221 DFLA--SYA-----DE--FLVHGVDVEGKKLGIDDELVALL----G----KY------SPIPVTYAGGVTTMADLEKIKV  277 (316)
Q Consensus       221 ~~~~--~Ga-----~~--ilvtdi~~dG~~~G~d~eli~~l----~----~~------~~iPVIasGGI~s~eDi~~l~~  277 (316)
                      ++..  .++     ..  |-|-.+..-||..-...+.+.++    +    +.      -.++|+++|+|..-+...-+..
T Consensus       147 Ql~~~l~~~~~~~~~~~vIAYEPvWAIGTG~~Atpe~a~evh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~  226 (251)
T 2vxn_A          147 QTSAIAAKLTKDAWNQVVLAYEPVWAIGTGKVATPEQAQEVHLLLRKWVSENIGTDVAAKLRILYGGSVNAANAATLYAK  226 (251)
T ss_dssp             HHHHHHTTCCTGGGGGEEEEECCGGGSSSSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHCEEEEESSCCTTTHHHHHTS
T ss_pred             HHHHHHhcCCHHHhCCEEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcChhhcccccEEEcCCcCHhHHHHHhcC
Confidence            2221  223     12  34778889999877766644432    2    11      1479999999988655554444


Q ss_pred             hCCCcCEEEEccchhhccCcccHHHHHH
Q 021156          278 AGIGRVDVTVGSALDIFGGNLAYKDVVA  305 (316)
Q Consensus       278 ~G~g~~gVivG~Al~~~~g~~~~~~~~~  305 (316)
                      .  ++||+.||.|-  +.  =.|.++++
T Consensus       227 ~--diDG~LVGgAs--L~--~~F~~Ii~  248 (251)
T 2vxn_A          227 P--DINGFLVGGAS--LK--PEFRDIID  248 (251)
T ss_dssp             T--TCCEEEESGGG--GS--TTHHHHHH
T ss_pred             C--CCCeeeecHHH--HH--HHHHHHHH
Confidence            4  49999999999  76  35666654

>2ozt_A TLR1174 protein; structural genomics, O-succinylbenzoate synthase, PSI, protein structure initiative; 1.42A {Synechococcus elongatus} PDB: 3h7v_A

Probab=90.63  E-value=2  Score=39.67  Aligned_cols=135  Identities=14%  Similarity=0.102  Sum_probs=88.0

Q ss_pred             HHHHHHHHcCCCE--EEeCCe-eecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHH
Q 021156          145 DNSLSYIEEGATH--VIVTSY-VFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLD  221 (316)
Q Consensus       145 e~~~~~l~~Gad~--VVigt~-~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~  221 (316)
                      ++++++.+.|...  +=+|.. ...+    .+.++.+.+.+|++ +-+.+|.   |+       +|...   +..++++.
T Consensus       122 ~~a~~~~~~G~~~~KiKvg~~~~~~d----~~~v~avr~~~g~~-~~L~vDa---N~-------~~~~~---~A~~~~~~  183 (332)
T 2ozt_A          122 EQWQQSWQRGQTTFKWKVGVMSPEEE----QAILKALLAALPPG-AKLRLDA---NG-------SWDRA---TANRWFAW  183 (332)
T ss_dssp             HHHHHHHHTTCCEEEEECSSSCHHHH----HHHHHHHHHHSCTT-CEEEEEC---TT-------CCCHH---HHHHHHHH
T ss_pred             HHHHHHHHcCCcEEEEEeCCCChHHH----HHHHHHHHHHcCCC-CEEEEcc---cC-------CCCHH---HHHHHHHH
Confidence            6688888999874  445542 2233    78899999999754 6678887   33       45421   35567777


Q ss_pred             HHHc---CCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcc
Q 021156          222 FLAS---YADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNL  298 (316)
Q Consensus       222 ~~~~---Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~  298 (316)
                      +.+.   ++.  .+=+     =..--|++.++++++.+++||.+.=-+.+..|+.++.+.+. ++.+.+=-+.  .+| +
T Consensus       184 l~~~~~~~i~--~iEq-----P~~~~d~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~a-~~~i~ik~~~--~GG-i  252 (332)
T 2ozt_A          184 LDRHGNGKIE--YVEQ-----PLPPDQWQALLSLAQTVTTAIALDESVVSAAEVQRWVDRGW-PGFFVIKTAL--FGD-P  252 (332)
T ss_dssp             HHHHCCTTEE--EEEC-----CSCTTCHHHHHHHHHHCSSCEEESTTCCSHHHHHHHHHTTC-CSEEEECHHH--HSC-H
T ss_pred             HHhhccCCcc--eeEC-----CCCCCCHHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHhCC-CCEEEEChhh--hCC-H
Confidence            7776   332  2111     11223899999999888999888777889999999999972 4434443333  334 3


Q ss_pred             cHHHHHHHHHhh
Q 021156          299 AYKDVVAWHAQQ  310 (316)
Q Consensus       299 ~~~~~~~~~~~~  310 (316)
                        .++.++++++
T Consensus       253 --~~i~~~A~~~  262 (332)
T 2ozt_A          253 --DSLSLLLRRG  262 (332)
T ss_dssp             --HHHHHHHHTT
T ss_pred             --HHHHHHHHHh
Confidence              3666666665

>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}

Probab=90.51  E-value=9.8  Score=34.48  Aligned_cols=203  Identities=13%  Similarity=0.002  Sum_probs=109.5

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCCc-----ccHHHHHHHHH-hCCCcEEEecCCCHHHHHHHHHcCCCEEEe-CCeee
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGADP-----LSKAAAIEALH-AYPGGLQVGGGINSDNSLSYIEEGATHVIV-TSYVF  165 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~~-----~~~~~i~~~v~-~~~~pl~vGGGIr~e~~~~~l~~Gad~VVi-gt~~~  165 (316)
                      .+-+++++.+.+.|++.+-+--....+     .....+.+.+. ..+.|+.+=- -+.+++++++++|++.|-+ .+...
T Consensus        30 e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~-~~~~~i~~a~~aG~~~v~i~~~~s~  108 (302)
T 2ftp_A           30 ADKIRLVDDLSAAGLDYIEVGSFVSPKWVPQMAGSAEVFAGIRQRPGVTYAALA-PNLKGFEAALESGVKEVAVFAAASE  108 (302)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEEECSCTTTCGGGTTHHHHHHHSCCCTTSEEEEEC-CSHHHHHHHHHTTCCEEEEEEESCH
T ss_pred             HHHHHHHHHHHHcCcCEEEECCCcCccccccccCHHHHHHHhhhcCCCEEEEEe-CCHHHHHHHHhCCcCEEEEEEecCH
Confidence            456678899999998877666533211     12233333332 2344554322 1469999999999999876 22211


Q ss_pred             --c--C-CCC---CHHHHHHHHH---HhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEee
Q 021156          166 --N--N-GQM---DLERLKDLVR---VVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHG  234 (316)
Q Consensus       166 --~--~-~~~---~~eli~ei~~---~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtd  234 (316)
                        .  + ++.   +.+.++++++   .+| -.+-..+-.-. +..     .... ...-.+.++++.+.+.|++.+.+-|
T Consensus       109 ~~~~~~~~~s~ee~l~~~~~~v~~a~~~G-~~V~~~l~~~~-~~e-----~~~~-~~~~~~~~~~~~~~~~G~d~i~l~D  180 (302)
T 2ftp_A          109 AFSQRNINCSIKDSLERFVPVLEAARQHQ-VRVRGYISCVL-GCP-----YDGD-VDPRQVAWVARELQQMGCYEVSLGD  180 (302)
T ss_dssp             HHHHHHHSSCHHHHHHHHHHHHHHHHHTT-CEEEEEEECTT-CBT-----TTBC-CCHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHCC-CeEEEEEEEEe-eCC-----cCCC-CCHHHHHHHHHHHHHcCCCEEEEeC
Confidence              0  0 000   1233444443   344 12222221100 000     0001 1111356677777899999987664


Q ss_pred             cCCccccCCC-CHHHHHHHhhcC-CCcEEEEe--CCCC-HHHHHHHHHhCCCcCEEEEccchhhc---------cCcccH
Q 021156          235 VDVEGKKLGI-DDELVALLGKYS-PIPVTYAG--GVTT-MADLEKIKVAGIGRVDVTVGSALDIF---------GGNLAY  300 (316)
Q Consensus       235 i~~dG~~~G~-d~eli~~l~~~~-~iPVIasG--GI~s-~eDi~~l~~~G~g~~gVivG~Al~~~---------~g~~~~  300 (316)
                        ..|..... ..++++.+++.+ ++|+-+-|  +-+. ......+.+.|  +..|=..-.=  +         .|+..+
T Consensus       181 --T~G~~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla~An~laAv~aG--a~~vd~tv~G--lG~cp~a~gr~GN~~~  254 (302)
T 2ftp_A          181 --TIGVGTAGATRRLIEAVASEVPRERLAGHFHDTYGQALANIYASLLEG--IAVFDSSVAG--LGGCPYAKGATGNVAS  254 (302)
T ss_dssp             --SSSCCCHHHHHHHHHHHTTTSCGGGEEEEEBCTTSCHHHHHHHHHHTT--CCEEEEBGGG--CCBCGGGTTCBCBCBH
T ss_pred             --CCCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCccHHHHHHHHHHHhC--CCEEEecccc--cCCCCCCCCCCCChhH
Confidence              44665433 567899998877 68998776  3222 34466666777  5433222111  2         367888


Q ss_pred             HHHHHHHHhh
Q 021156          301 KDVVAWHAQQ  310 (316)
Q Consensus       301 ~~~~~~~~~~  310 (316)
                      ++++..++..
T Consensus       255 E~lv~~l~~~  264 (302)
T 2ftp_A          255 EDVLYLLNGL  264 (302)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhc
Confidence            8888777654

>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}

Probab=90.49  E-value=0.48  Score=43.42  Aligned_cols=67  Identities=16%  Similarity=0.115  Sum_probs=49.9

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHh--CCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeec
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHA--YPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~--~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      +. +-++...++|++   +|.||.-  ....+.++++.  -.+++.+-|||+.+.+..+.+.|+|.+.+|+....
T Consensus       207 tl-~ea~eAl~aGaD---~I~LDn~--~~~~l~~av~~~~~~v~ieaSGGIt~~~i~~~a~tGVD~IsvGalt~s  275 (287)
T 3tqv_A          207 NL-DELNQAIAAKAD---IVMLDNF--SGEDIDIAVSIARGKVALEVSGNIDRNSIVAIAKTGVDFISVGAITKH  275 (287)
T ss_dssp             SH-HHHHHHHHTTCS---EEEEESC--CHHHHHHHHHHHTTTCEEEEESSCCTTTHHHHHTTTCSEEECSHHHHS
T ss_pred             CH-HHHHHHHHcCCC---EEEEcCC--CHHHHHHHHHhhcCCceEEEECCCCHHHHHHHHHcCCCEEEEChhhcC
Confidence            45 445555567765   7777753  34556666653  36899999999999999999999999999987654

>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}

Probab=90.46  E-value=0.66  Score=42.44  Aligned_cols=67  Identities=22%  Similarity=0.201  Sum_probs=48.7

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHhC--CCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeec
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAY--PGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~--~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      ++.++ +...++|++   ++.||.-  ....++++++.+  .+|+.+-|||+.+.+..+.++|+|.|.+|+....
T Consensus       205 t~eea-~eA~~aGaD---~I~ld~~--~~~~~k~av~~v~~~ipi~AsGGIt~eni~~~a~tGvD~IsVgs~~~~  273 (286)
T 1x1o_A          205 SLEEL-EEALEAGAD---LILLDNF--PLEALREAVRRVGGRVPLEASGNMTLERAKAAAEAGVDYVSVGALTHS  273 (286)
T ss_dssp             SHHHH-HHHHHHTCS---EEEEESC--CHHHHHHHHHHHTTSSCEEEESSCCHHHHHHHHHHTCSEEECTHHHHS
T ss_pred             CHHHH-HHHHHcCCC---EEEECCC--CHHHHHHHHHHhCCCCeEEEEcCCCHHHHHHHHHcCCCEEEEcHHHcC
Confidence            45544 444467775   5677653  334455555543  6899999999999999999999999999886554

>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...

Probab=90.36  E-value=3  Score=37.48  Aligned_cols=117  Identities=13%  Similarity=0.128  Sum_probs=76.9

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCH
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDL  172 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~  172 (316)
                      ||..+.+ -...|++.+-++-=--.+.....+.+..+..++.+.|-  +. .+++++++++|++.|-|++--+++-+.++
T Consensus       115 d~yQI~e-Ar~~GADaILLI~a~L~~~~l~~l~~~A~~lGl~~LvE--Vh~~~El~rAl~~~a~iIGINNRnL~tf~vdl  191 (258)
T 4a29_A          115 KESQIDD-AYNLGADTVLLIVKILTERELESLLEYARSYGMEPLIL--INDENDLDIALRIGARFIGIMSRDFETGEINK  191 (258)
T ss_dssp             SHHHHHH-HHHHTCSEEEEEGGGSCHHHHHHHHHHHHHTTCCCEEE--ESSHHHHHHHHHTTCSEEEECSBCTTTCCBCH
T ss_pred             cHHHHHH-HHHcCCCeeehHHhhcCHHHHHHHHHHHHHHhHHHHHh--cchHHHHHHHhcCCCcEEEEeCCCccccccCH
Confidence            5654433 33468886654421001122344555566666544442  45 48899999999999999887776666789


Q ss_pred             HHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEE
Q 021156          173 ERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLV  232 (316)
Q Consensus       173 eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilv  232 (316)
                      +...++...++++.++++-                   +++...+.++.+.+.|++.+++
T Consensus       192 ~~t~~L~~~ip~~~~~VsE-------------------SGI~t~~dv~~l~~~G~~a~LV  232 (258)
T 4a29_A          192 ENQRKLISMIPSNVVKVAK-------------------LGISERNEIEELRKLGVNAFLI  232 (258)
T ss_dssp             HHHHHHHTTSCTTSEEEEE-------------------ESSCCHHHHHHHHHTTCCEEEE
T ss_pred             HHHHHHHhhCCCCCEEEEc-------------------CCCCCHHHHHHHHHCCCCEEEE
Confidence            9999999888766554443                   2333456788899999999987

>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}

Probab=90.29  E-value=0.69  Score=42.60  Aligned_cols=67  Identities=15%  Similarity=0.131  Sum_probs=50.2

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHh--CCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeec
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHA--YPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~--~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      +. +-++...++|++   +|.||.  ...+.+.++++.  -.+.+.+.|||+.+.+..|.+.|+|.+.+|+....
T Consensus       216 tl-~e~~eAl~aGaD---iImLDn--~s~~~l~~av~~~~~~v~leaSGGIt~~~i~~~A~tGVD~IsvGalths  284 (300)
T 3l0g_A          216 NI-SQVEESLSNNVD---MILLDN--MSISEIKKAVDIVNGKSVLEVSGCVNIRNVRNIALTGVDYISIGCITNS  284 (300)
T ss_dssp             SH-HHHHHHHHTTCS---EEEEES--CCHHHHHHHHHHHTTSSEEEEESSCCTTTHHHHHTTTCSEEECGGGTSS
T ss_pred             CH-HHHHHHHHcCCC---EEEECC--CCHHHHHHHHHhhcCceEEEEECCCCHHHHHHHHHcCCCEEEeCccccC
Confidence            44 455555567766   777875  234566666653  35789999999999999999999999999987654

>3qst_A Triosephosphate isomerase, putative; TIM barrel; 1.75A {Trichomonas vaginalis} PDB: 3qsr_A

Probab=90.26  E-value=0.77  Score=41.32  Aligned_cols=142  Identities=11%  Similarity=0.032  Sum_probs=80.2

Q ss_pred             HHHHHHHcCCCEEEeCCeeecC--CCCCHHHHHHHHHHh--cCceEEEeeeeeecCCeeEEEeCCcceecccCHHHH-HH
Q 021156          146 NSLSYIEEGATHVIVTSYVFNN--GQMDLERLKDLVRVV--GKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDER-VL  220 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~~~~~--~~~~~eli~ei~~~~--G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~-a~  220 (316)
                      ....+.++||+.|+||=.-++.  ++.|...-+++....  | =..++++.=...           ....+ ...+. ..
T Consensus        81 S~~mL~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~G-L~pIlCvGEtle-----------ere~g-~t~~vv~~  147 (255)
T 3qst_A           81 TVPMIKSFGIEWTILGHSERRDILKEDDEFLAAKAKFALENG-MKIIYCCGEHLS-----------EREAG-KASEFVSA  147 (255)
T ss_dssp             CHHHHHTTTCCEEEESCHHHHHTSCCCHHHHHHHHHHHHHTT-CEEEEEECCCHH-----------HHHTT-CHHHHHHH
T ss_pred             CHHHHHHcCCCEEEECchhhhhhcCCCHHHHHHHHHHHHHCC-CeEEEEcCCcHH-----------HHHcC-CHHHHHHH
Confidence            3778889999999999664432  333333333344333  2 245666642100           00011 11121 11


Q ss_pred             HHHHc--C--C---CE--EEEeecCCccccCCCCHHHHHHH----hhc----------CCCcEEEEeCCCCHHHHHHHHH
Q 021156          221 DFLAS--Y--A---DE--FLVHGVDVEGKKLGIDDELVALL----GKY----------SPIPVTYAGGVTTMADLEKIKV  277 (316)
Q Consensus       221 ~~~~~--G--a---~~--ilvtdi~~dG~~~G~d~eli~~l----~~~----------~~iPVIasGGI~s~eDi~~l~~  277 (316)
                      ++...  +  .   ..  |-|-.+..-||..-...+.+.++    ++.          -.++|+++|+|..-+... ++.
T Consensus       148 Ql~~~l~~~~~~~~~~~vIAYEPvWAIGTG~~Atpe~aqevh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~N~~~-l~~  226 (255)
T 3qst_A          148 QIEKMIPAIPAGKWDDVVIAYEPIWAIGTGKVASTQDAQEMCKVIRDILAAKVGADIANKVRILYGGSVKPNNCNE-LAA  226 (255)
T ss_dssp             HHHHHGGGSCTTCGGGEEEEECCGGGSSSSCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHCEEEECSCCCTTTHHH-HHH
T ss_pred             HHHHHHccCCHHHhCCEEEEECCHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcChhhcCcccEEEcCCcCHhHHHH-Hhc
Confidence            22111  1  1   22  34678888899877665543332    221          247999999998865544 444


Q ss_pred             hCCCcCEEEEccchhhccCcccHHHHHHH
Q 021156          278 AGIGRVDVTVGSALDIFGGNLAYKDVVAW  306 (316)
Q Consensus       278 ~G~g~~gVivG~Al~~~~g~~~~~~~~~~  306 (316)
                      .. ++||+.||.|-  +. + .|-++.+.
T Consensus       227 ~~-diDG~LVGgAS--L~-~-~F~~Ii~~  250 (255)
T 3qst_A          227 CP-DVDGFLVGGAS--LE-A-GFINIVNS  250 (255)
T ss_dssp             ST-TCCEEEECGGG--GS-T-THHHHHGG
T ss_pred             CC-CCCEEEeeHHH--hh-H-HHHHHHHH
Confidence            43 49999999999  87 5 77777644

>1tre_A Triosephosphate isomerase; intramolecular oxidoreductase; 2.60A {Escherichia coli} SCOP: c.1.1.1 PDB: 1tmh_A

Probab=90.18  E-value=1.1  Score=40.24  Aligned_cols=146  Identities=14%  Similarity=0.074  Sum_probs=83.2

Q ss_pred             HHHHHHHcCCCEEEeCCeeecC--CCCCHHHHHHHHHHh--cCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHH-H
Q 021156          146 NSLSYIEEGATHVIVTSYVFNN--GQMDLERLKDLVRVV--GKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERV-L  220 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~~~~~--~~~~~eli~ei~~~~--G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a-~  220 (316)
                      ....+.++||+.|+||=.-++.  ++.|...-+++....  | =..++++.-...     -+-.|-..  .+ +.... .
T Consensus        79 S~~mL~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~G-L~pI~CvGEtle-----ere~g~t~--~v-v~~Ql~~  149 (255)
T 1tre_A           79 SAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQG-LTPVLCIGETEA-----ENEAGKTE--EV-CARQIDA  149 (255)
T ss_dssp             CHHHHHHHTCCEEEESCHHHHHHSCCCHHHHHHHHHHHHHTT-CEEEEEECCCHH-----HHHTTCHH--HH-HHHHHHH
T ss_pred             CHHHHHHcCCCEEEECccccccccCCCHHHHHHHHHHHHHCC-CEEEEEcCCcHH-----HHhcCCHH--HH-HHHHHHH
Confidence            3778889999999999765432  343333333344333  2 245666642100     00001000  00 11111 1


Q ss_pred             HHHHcCCC-----EEEEeecCCccccCCCCHHHHHHH----hhc---------CCCcEEEEeCCCCHHHHHHHHHhCCCc
Q 021156          221 DFLASYAD-----EFLVHGVDVEGKKLGIDDELVALL----GKY---------SPIPVTYAGGVTTMADLEKIKVAGIGR  282 (316)
Q Consensus       221 ~~~~~Ga~-----~ilvtdi~~dG~~~G~d~eli~~l----~~~---------~~iPVIasGGI~s~eDi~~l~~~G~g~  282 (316)
                      .+...+.+     -|-|-.+..-||..-...+.+.++    ++.         -.++|+++|+|..- ++.+++.+. ++
T Consensus       150 ~l~~~~~~~~~~vvIAYEPvWAIGTG~~Atpe~a~evh~~IR~~l~~~~~~~a~~vrIlYGGSV~~~-N~~~l~~~~-di  227 (255)
T 1tre_A          150 VLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAKVDANIAEQVIIQYGGSVNAS-NAAELFAQP-DI  227 (255)
T ss_dssp             HHHHHCGGGGTTCEEEECCGGGSSSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECSCCCTT-THHHHHTST-TC
T ss_pred             HHhcCCHHHcCcEEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHhcChhhcCcccEEEcCCCCHH-HHHHHHcCC-CC
Confidence            12222333     345788899999877766544432    221         24799999999886 899999865 59


Q ss_pred             CEEEEccchhhccCcccHHHHHH
Q 021156          283 VDVTVGSALDIFGGNLAYKDVVA  305 (316)
Q Consensus       283 ~gVivG~Al~~~~g~~~~~~~~~  305 (316)
                      ||+.||.|-  +. .=+|.++++
T Consensus       228 DG~LVGgAs--L~-a~~F~~Ii~  247 (255)
T 1tre_A          228 DGALVGGAS--LK-ADAFAVIVK  247 (255)
T ss_dssp             CEEEESGGG--GC-HHHHHHHHH
T ss_pred             CeeEecHHH--hC-hHHHHHHHH
Confidence            999999999  63 333444544

>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1

Probab=90.14  E-value=0.58  Score=43.08  Aligned_cols=71  Identities=14%  Similarity=0.140  Sum_probs=52.2

Q ss_pred             HHHHHHHHHcCCCcceEEE-ecCCcccHHHHHHHHHh----CCCc-EEEecCCCH----HHHHHHHHcCCCEEEeCCeee
Q 021156           96 AEFANLYKEDGLTGGHAIM-LGADPLSKAAAIEALHA----YPGG-LQVGGGINS----DNSLSYIEEGATHVIVTSYVF  165 (316)
Q Consensus        96 ~e~a~~~~~~G~~~l~lvD-Lda~~~~~~~i~~~v~~----~~~p-l~vGGGIr~----e~~~~~l~~Gad~VVigt~~~  165 (316)
                      .+.++...+.|++.+.+=. .++. ...+.+.+.++.    +++| +.+-||+..    +.++.+.++|++-+++|...+
T Consensus       180 ~~aa~~a~~lGaD~iKv~~~~~~~-g~~~~~~~vv~~~~~~~~~P~Vv~aGG~~~~~~~~~~~~a~~aGa~Gv~vGRaI~  258 (304)
T 1to3_A          180 IDAAKELGDSGADLYKVEMPLYGK-GARSDLLTASQRLNGHINMPWVILSSGVDEKLFPRAVRVAMEAGASGFLAGRAVW  258 (304)
T ss_dssp             HHHHHHHTTSSCSEEEECCGGGGC-SCHHHHHHHHHHHHHTCCSCEEECCTTSCTTTHHHHHHHHHHTTCCEEEESHHHH
T ss_pred             HHHHHHHHHcCCCEEEeCCCcCCC-CCHHHHHHHHHhccccCCCCeEEEecCCCHHHHHHHHHHHHHcCCeEEEEehHHh
Confidence            4456777778888666544 3321 244556666665    7899 999999963    569999999999999999998


Q ss_pred             cC
Q 021156          166 NN  167 (316)
Q Consensus       166 ~~  167 (316)
                      ..
T Consensus       259 q~  260 (304)
T 1to3_A          259 SS  260 (304)
T ss_dssp             GG
T ss_pred             Cc
Confidence            64

>3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ...

Probab=90.08  E-value=1.3  Score=38.83  Aligned_cols=178  Identities=11%  Similarity=0.047  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHcC--CCcceEEEecCC-cccHHHHHHHHHh-CCCcEEEecCCC-----H-HHHHHHHHcCCCEEEeCCee
Q 021156           95 AAEFANLYKEDG--LTGGHAIMLGAD-PLSKAAAIEALHA-YPGGLQVGGGIN-----S-DNSLSYIEEGATHVIVTSYV  164 (316)
Q Consensus        95 p~e~a~~~~~~G--~~~l~lvDLda~-~~~~~~i~~~v~~-~~~pl~vGGGIr-----~-e~~~~~l~~Gad~VVigt~~  164 (316)
                      ..+..+...+.+  ++++|+ .+.-- .... .+++.+++ .+.++..+-=.-     . ..++.++++|||.+.+-...
T Consensus        24 ~~~a~~~v~~~~~~v~~~Kv-g~~lf~~~G~-~~v~~l~~~~g~~v~lD~Kl~DipnTv~~~~~~~~~~gad~vtvh~~~  101 (228)
T 3m47_A           24 RDDALRVTGEVREYIDTVKI-GYPLVLSEGM-DIIAEFRKRFGCRIIADFKVADIPETNEKICRATFKAGADAIIVHGFP  101 (228)
T ss_dssp             HHHHHHHHHTTTTTCSEEEE-EHHHHHHHCT-HHHHHHHHHHCCEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESTT
T ss_pred             HHHHHHHHHHcCCcccEEEE-cHHHHHhcCH-HHHHHHHhcCCCeEEEEEeecccHhHHHHHHHHHHhCCCCEEEEeccC
Confidence            333333334444  677777 32200 0111 23334443 344555554432     2 24778889999998885432


Q ss_pred             ecCCCCCHHHHH---HHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCcccc
Q 021156          165 FNNGQMDLERLK---DLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKK  241 (316)
Q Consensus       165 ~~~~~~~~eli~---ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~  241 (316)
                      -      .+.++   +..+.+|+ .+.+=...   ..      .++.+...-.....++...+.|++.+++-.       
T Consensus       102 G------~~~l~~~~~~~~~~g~-~v~vLt~~---s~------~~~~~~~~~~~~~~a~~a~~~G~~GvV~~a-------  158 (228)
T 3m47_A          102 G------ADSVRACLNVAEEMGR-EVFLLTEM---SH------PGAEMFIQGAADEIARMGVDLGVKNYVGPS-------  158 (228)
T ss_dssp             C------HHHHHHHHHHHHHHTC-EEEEECCC---CS------GGGGTTHHHHHHHHHHHHHHTTCCEEECCS-------
T ss_pred             C------HHHHHHHHHHHHhcCC-CeEEEEeC---CC------ccHHHHHHHHHHHHHHHHHHhCCcEEEECC-------
Confidence            1      33333   33344553 33221111   00      111111011134567777788887765311       


Q ss_pred             CCCCHHHHHHHhhcCCC-cEEEEeCCCCH-HHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156          242 LGIDDELVALLGKYSPI-PVTYAGGVTTM-ADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVA  305 (316)
Q Consensus       242 ~G~d~eli~~l~~~~~i-PVIasGGI~s~-eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~  305 (316)
                        ...+.++.+++.++- ..++.+||+.. .+. ++.+.|  ++.+++||++  |... ++.+..+
T Consensus       159 --t~~~e~~~ir~~~~~~~~iv~PGI~~~g~~p-~~~~aG--ad~iVvGr~I--~~a~-dp~~a~~  216 (228)
T 3m47_A          159 --TRPERLSRLREIIGQDSFLISPGVGAQGGDP-GETLRF--ADAIIVGRSI--YLAD-NPAAAAA  216 (228)
T ss_dssp             --SCHHHHHHHHHHHCSSSEEEECC----------CGGGT--CSEEEECHHH--HTSS-CHHHHHH
T ss_pred             --CChHHHHHHHHhcCCCCEEEecCcCcCCCCH-hHHHcC--CCEEEECHHH--hCCC-CHHHHHH
Confidence              123456666665432 34578888753 256 677777  8999999999  7544 3444443

>1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel, protein-inhibitor complex, homodimer, lyase; HET: BMQ; 2.50A {Escherichia coli} SCOP: c.1.2.3 PDB: 1jjk_A* 1l2u_A

Probab=90.02  E-value=0.86  Score=40.41  Aligned_cols=153  Identities=9%  Similarity=-0.006  Sum_probs=79.4

Q ss_pred             HHHHHHhCCCcEEEecCCC--HH----HHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHH---HHhcCce-EEEeeeee
Q 021156          125 AIEALHAYPGGLQVGGGIN--SD----NSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLV---RVVGKQR-LVLDLSCR  194 (316)
Q Consensus       125 i~~~v~~~~~pl~vGGGIr--~e----~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~---~~~G~~~-IvvslD~k  194 (316)
                      +++.+++.+.++..+--.-  .+    -++.+.++|||.+.+-.+.-      .+.++.+.   +.+|.++ .++.+...
T Consensus        57 ~v~~lr~~~~~v~lD~kl~Dip~t~~~~i~~~~~~Gad~vTvH~~~g------~~~l~~~~~~~~~~G~~~~~~l~v~~~  130 (245)
T 1eix_A           57 FVRELQQRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHASGG------ARMMTAAREALVPFGKDAPLLIAVTVL  130 (245)
T ss_dssp             HHHHHHHTTCCEEEEEEECSCHHHHHHHHHHHHHHTCSEEEEBGGGC------HHHHHHHHHTTGGGGGGCCEEEEECSC
T ss_pred             HHHHHHHCCCcEEEEeeccccHHHHHHHHHHHHhCCCCEEEEeccCC------HHHHHHHHHHHHHcCCCCCcEEEEEec
Confidence            4455554444444444432  22    46678899999998876542      33344443   3455312 23444332


Q ss_pred             ecCCeeEEEeCCccee-cccCHHHHHHH----HHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcC-CCcEEEEeCCCC
Q 021156          195 KKDGKYAIVTDRWQKF-SDVYLDERVLD----FLASYADEFLVHGVDVEGKKLGIDDELVALLGKYS-PIPVTYAGGVTT  268 (316)
Q Consensus       195 ~~~g~~~v~~~gw~~~-~~~~~~e~a~~----~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~-~iPVIasGGI~s  268 (316)
                      ...+.     ..+++. ...+..+.+..    ..+.|.+.++...           ++ ++++++.. +.++++.|||+.
T Consensus       131 ts~~~-----~~l~~~~~~~~~~d~Vl~ma~~~~~~G~~g~V~~~-----------~e-i~~lr~~~~~~~i~v~gGI~~  193 (245)
T 1eix_A          131 TSMEA-----SDLVDLGMTLSPADYAERLAALTQKCGLDGVVCSA-----------QE-AVRFKQVFGQEFKLVTPGIRP  193 (245)
T ss_dssp             TTCCH-----HHHHTTTCCSCHHHHHHHHHHHHHHTTCSEEECCG-----------GG-HHHHHHHHCSSSEEEECCBCC
T ss_pred             CCCCH-----HHHHHhccCCCHHHHHHHHHHHHHHcCCCeEEeCH-----------HH-HHHHHHhcCCCCEEEECCcCC
Confidence            10000     001100 00123333322    3456776654321           12 44444433 368999999986


Q ss_pred             HH----------HHHHHHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156          269 MA----------DLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVA  305 (316)
Q Consensus       269 ~e----------Di~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~  305 (316)
                      ..          .+.++.+.|  ++.+++||++  |..+ ++.+..+
T Consensus       194 ~g~~~~dq~rv~t~~~a~~aG--ad~iVvGr~I--~~a~-dp~~a~~  235 (245)
T 1eix_A          194 QGSEAGDQRRIMTPEQALSAG--VDYMVIGRPV--TQSV-DPAQTLK  235 (245)
T ss_dssp             TTCCCTTCCSCBCHHHHHHTT--CSEEEECHHH--HTSS-SHHHHHH
T ss_pred             CCCCccchhccCCHHHHHHcC--CCEEEECHHH--cCCC-CHHHHHH
Confidence            31          477788888  8999999999  7543 3444433

>2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, NPPSFA, national project on structural and functional analyses; HET: C5P; 2.20A {Geobacillus kaustophilus} PDB: 2yyt_A*

Probab=89.90  E-value=2.4  Score=37.46  Aligned_cols=148  Identities=14%  Similarity=0.099  Sum_probs=75.9

Q ss_pred             HHHHHHhCCCcEEEecCCC--HH----HHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHH---hcCce-EEEeeeee
Q 021156          125 AIEALHAYPGGLQVGGGIN--SD----NSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRV---VGKQR-LVLDLSCR  194 (316)
Q Consensus       125 i~~~v~~~~~pl~vGGGIr--~e----~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~---~G~~~-IvvslD~k  194 (316)
                      +++.+++.+.++..+--.-  .+    -++.+.++|||.|.+-...-.+   ..+.+.+..++   +|... .++++...
T Consensus        47 ~v~~lr~~~~~v~lD~kl~Dip~t~~~~~~~~~~~Gad~vTvH~~~g~~---~l~~~~~~~~~~~~~G~~~~~~lav~~~  123 (246)
T 2yyu_A           47 IVAFLKEQGHAVFLDLKLHDIPNTVKQAMKGLARVGADLVNVHAAGGRR---MMEAAIEGLDAGTPSGRMRPRCIAVTQL  123 (246)
T ss_dssp             HHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEEGGGCHH---HHHHHHHHHHHHSCSSSCCCEEEEESSC
T ss_pred             HHHHHHHCCCeEEEEeecccchHHHHHHHHHHHhcCCCEEEEECCCCHH---HHHHHHHHHHhhcccCCcCCCEEEEEeC
Confidence            4455555444555554442  12    4677889999999887654322   01222223333   45222 23444332


Q ss_pred             ecCCeeEEEeCCc-cee-cccCHHHHHHH----HHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcC-CCcEEEEeCCC
Q 021156          195 KKDGKYAIVTDRW-QKF-SDVYLDERVLD----FLASYADEFLVHGVDVEGKKLGIDDELVALLGKYS-PIPVTYAGGVT  267 (316)
Q Consensus       195 ~~~g~~~v~~~gw-~~~-~~~~~~e~a~~----~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~-~iPVIasGGI~  267 (316)
                      ...+.     ..+ ++. ...+..+.+..    ..+.|.+.++...           .+ ++++++.. ..++++.|||+
T Consensus       124 Ts~~~-----~~l~~~~~~~~~~~d~Vl~ma~~~~~~G~~g~V~~~-----------~e-i~~lr~~~~~~~i~V~gGI~  186 (246)
T 2yyu_A          124 TSTDE-----RMLHEELWISRPLVETVAHYAALAKESGLDGVVCSA-----------NE-AAFIKERCGASFLAVTPGIR  186 (246)
T ss_dssp             TTCCH-----HHHHHTSCCCSCHHHHHHHHHHHHHHHTCCEEECCH-----------HH-HHHHHHHHCTTSEEEECCCC
T ss_pred             CCCCH-----HHHHHHhcCCCCHHHHHHHHHHHHHHhCCCEEEeCH-----------HH-HHHHHHhcCCCCEEEeCCcC
Confidence            10000     011 100 00122333322    3556766654211           23 55555443 34699999998


Q ss_pred             CHH----------HHHHHHHhCCCcCEEEEccchhhccC
Q 021156          268 TMA----------DLEKIKVAGIGRVDVTVGSALDIFGG  296 (316)
Q Consensus       268 s~e----------Di~~l~~~G~g~~gVivG~Al~~~~g  296 (316)
                      ...          .+.++.+.|  ++.+++||++  |..
T Consensus       187 ~~g~~~~dq~rv~t~~~a~~aG--ad~iVvGr~I--~~a  221 (246)
T 2yyu_A          187 FADDAAHDQVRVVTPRKARALG--SDYIVIGRSL--TRA  221 (246)
T ss_dssp             CCC-------CCCCHHHHHHHT--CSEEEECHHH--HTS
T ss_pred             CCCCCcccccccCCHHHHHHcC--CCEEEECHhh--cCC
Confidence            531          477778888  8999999999  753

>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}

Probab=89.68  E-value=4.7  Score=37.92  Aligned_cols=152  Identities=9%  Similarity=0.070  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHcCCCcceEEEecCCc-ccHHHHHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHH
Q 021156           95 AAEFANLYKEDGLTGGHAIMLGADP-LSKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLE  173 (316)
Q Consensus        95 p~e~a~~~~~~G~~~l~lvDLda~~-~~~~~i~~~v~~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~e  173 (316)
                      -++.++.+.++|++   +|++.-.. .....+.++.+.+++|+..+=-.+..-+...+++|+|++=|+---+.+    .+
T Consensus        48 tv~Qi~~l~~aG~d---iVRvavp~~~~a~al~~I~~~~~vPlvaDiHf~~~lal~a~e~G~dklRINPGNig~----~~  120 (366)
T 3noy_A           48 TLNQIKRLYEAGCE---IVRVAVPHKEDVEALEEIVKKSPMPVIADIHFAPSYAFLSMEKGVHGIRINPGNIGK----EE  120 (366)
T ss_dssp             HHHHHHHHHHTTCC---EEEEECCSHHHHHHHHHHHHHCSSCEEEECCSCHHHHHHHHHTTCSEEEECHHHHSC----HH
T ss_pred             HHHHHHHHHHcCCC---EEEeCCCChHHHHHHHHHHhcCCCCEEEeCCCCHHHHHHHHHhCCCeEEECCcccCc----hh
Confidence            44677778889988   66664322 222334444456899999998888888888999999998776554443    45


Q ss_pred             HHHHHHHH---hcCceEEEeeeeeecCCee--EEEe-CCcce--ecccCHHHHHHHHHHcCCCEEEEeecCCccccCCC-
Q 021156          174 RLKDLVRV---VGKQRLVLDLSCRKKDGKY--AIVT-DRWQK--FSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGI-  244 (316)
Q Consensus       174 li~ei~~~---~G~~~IvvslD~k~~~g~~--~v~~-~gw~~--~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~-  244 (316)
                      .++++.+.   +| -.|.+.+.    .|..  .+.. .+...  .---+.++.++.+++.|++.+++---..     ++ 
T Consensus       121 ~~~~vv~~ak~~~-~piRIGvN----~GSL~~~ll~~yg~~~~eamVeSAl~~~~~~e~~gf~~iviS~K~S-----~v~  190 (366)
T 3noy_A          121 IVREIVEEAKRRG-VAVRIGVN----SGSLEKDLLEKYGYPSAEALAESALRWSEKFEKWGFTNYKVSIKGS-----DVL  190 (366)
T ss_dssp             HHHHHHHHHHHHT-CEEEEEEE----GGGCCHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECS-----SHH
T ss_pred             HHHHHHHHHHHcC-CCEEEecC----CcCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHhCCCCeEEEeeecC-----ChH
Confidence            55555544   43 22333322    1100  0000 00000  0001466788899999998877432221     12 


Q ss_pred             -CHHHHHHHhhcCCCcEEEE
Q 021156          245 -DDELVALLGKYSPIPVTYA  263 (316)
Q Consensus       245 -d~eli~~l~~~~~iPVIas  263 (316)
                       -.+.++.+++.++.|+-.+
T Consensus       191 ~~i~ayr~la~~~dyPLHlG  210 (366)
T 3noy_A          191 QNVRANLIFAERTDVPLHIG  210 (366)
T ss_dssp             HHHHHHHHHHHHCCCCEEEC
T ss_pred             HHHHHHHHHHhccCCCEEEc
Confidence             2456778888889998654

>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}

Probab=89.62  E-value=2.6  Score=38.49  Aligned_cols=89  Identities=19%  Similarity=0.190  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHcCCCEEEE-eecCCccccCCCCHHHHHHHhhcCCCcEEEE----eCCCCH---------HHHHHHHHhCC
Q 021156          215 LDERVLDFLASYADEFLV-HGVDVEGKKLGIDDELVALLGKYSPIPVTYA----GGVTTM---------ADLEKIKVAGI  280 (316)
Q Consensus       215 ~~e~a~~~~~~Ga~~ilv-tdi~~dG~~~G~d~eli~~l~~~~~iPVIas----GGI~s~---------eDi~~l~~~G~  280 (316)
                      -.+-+..+++.|+++|=+ ......|  .-|...+++.+++.+++||.+-    ||=.-+         +|+..++++| 
T Consensus        48 s~~~a~~A~~gGAdRIELc~~l~~GG--lTPS~g~i~~a~~~~~ipV~vMIRPRgGdF~Ys~~E~~~M~~dI~~~~~~G-  124 (287)
T 3iwp_A           48 SVESAVNAERGGADRIELCSGLSEGG--TTPSMGVLQVVKQSVQIPVFVMIRPRGGDFLYSDREIEVMKADIRLAKLYG-  124 (287)
T ss_dssp             SHHHHHHHHHHTCSEEEECBCGGGTC--BCCCHHHHHHHHTTCCSCEEEECCSSSSCSCCCHHHHHHHHHHHHHHHHTT-
T ss_pred             CHHHHHHHHHhCCCEEEECCCCCCCC--CCCCHHHHHHHHHhcCCCeEEEEecCCCCcccCHHHHHHHHHHHHHHHHcC-
Confidence            357788899999999843 3333322  2467889999988889998764    332222         5888899998 


Q ss_pred             CcCEEEEccchhhccCcccHHHHHHHHHh
Q 021156          281 GRVDVTVGSALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       281 g~~gVivG~Al~~~~g~~~~~~~~~~~~~  309 (316)
                       ++|+++|---  =+|.++.+...++...
T Consensus       125 -AdGvVfG~L~--~dg~iD~~~~~~Li~~  150 (287)
T 3iwp_A          125 -ADGLVFGALT--EDGHIDKELCMSLMAI  150 (287)
T ss_dssp             -CSEEEECCBC--TTSCBCHHHHHHHHHH
T ss_pred             -CCEEEEeeeC--CCCCcCHHHHHHHHHH
Confidence             9999999544  4577887777766554

>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1

Probab=89.59  E-value=3.9  Score=35.76  Aligned_cols=124  Identities=13%  Similarity=0.011  Sum_probs=80.4

Q ss_pred             HHHHHHhCC-CcEEEecCCC-H-HHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeE
Q 021156          125 AIEALHAYP-GGLQVGGGIN-S-DNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYA  201 (316)
Q Consensus       125 i~~~v~~~~-~pl~vGGGIr-~-e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~  201 (316)
                      +.+.+++.+ +|+..+--.. . +-++.+++.|++.+-+.......    .+.++++.++|+ + +.+..+.-       
T Consensus        19 ~~~~l~~~~ii~V~r~~~~~~~~~~~~al~~gGv~~iel~~k~~~~----~~~i~~l~~~~~-~-~~igagtv-------   85 (225)
T 1mxs_A           19 IDAICEKARILPVITIAREEDILPLADALAAGGIRTLEVTLRSQHG----LKAIQVLREQRP-E-LCVGAGTV-------   85 (225)
T ss_dssp             HHHHHHHHSEEEEECCSCGGGHHHHHHHHHHTTCCEEEEESSSTHH----HHHHHHHHHHCT-T-SEEEEECC-------
T ss_pred             HHHHHHHCCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEecCCccH----HHHHHHHHHhCc-c-cEEeeCeE-------
Confidence            334444333 4666665554 3 56889999999998886433222    577888888884 3 22333221       


Q ss_pred             EEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCC
Q 021156          202 IVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIG  281 (316)
Q Consensus       202 v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g  281 (316)
                                 ++ .+.++.+.+.|++.+.  .       .+.|.+.++.. +..++|++.  |+.|++++.++.+.|  
T Consensus        86 -----------l~-~d~~~~A~~aGAd~v~--~-------p~~d~~v~~~~-~~~g~~~i~--G~~t~~e~~~A~~~G--  139 (225)
T 1mxs_A           86 -----------LD-RSMFAAVEAAGAQFVV--T-------PGITEDILEAG-VDSEIPLLP--GISTPSEIMMGYALG--  139 (225)
T ss_dssp             -----------CS-HHHHHHHHHHTCSSEE--C-------SSCCHHHHHHH-HHCSSCEEC--EECSHHHHHHHHTTT--
T ss_pred             -----------ee-HHHHHHHHHCCCCEEE--e-------CCCCHHHHHHH-HHhCCCEEE--eeCCHHHHHHHHHCC--
Confidence                       11 2678888899999763  1       13466665444 446778877  399999999999998  


Q ss_pred             cCEEEE
Q 021156          282 RVDVTV  287 (316)
Q Consensus       282 ~~gViv  287 (316)
                      ++.+-+
T Consensus       140 ad~vk~  145 (225)
T 1mxs_A          140 YRRFKL  145 (225)
T ss_dssp             CCEEEE
T ss_pred             CCEEEE
Confidence            776665

>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}

Probab=89.45  E-value=0.93  Score=42.12  Aligned_cols=63  Identities=24%  Similarity=0.143  Sum_probs=47.1

Q ss_pred             HHHHHHHcCCCcceEEEecCCcccHHHHHHHHHh--CCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeee
Q 021156           98 FANLYKEDGLTGGHAIMLGADPLSKAAAIEALHA--YPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVF  165 (316)
Q Consensus        98 ~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~--~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~  165 (316)
                      -++...++|++   +|.||.-  +...+.++++.  -.+++.+-|||+.+.+..+.+.|+|.+.+|+...
T Consensus       243 ea~eAl~aGaD---~I~LDn~--~~~~l~~av~~l~~~v~ieaSGGIt~~~I~~~a~tGVD~isvGalt~  307 (320)
T 3paj_A          243 ELEEAISAGAD---IIMLDNF--SLEMMREAVKINAGRAALENSGNITLDNLKECAETGVDYISVGALTK  307 (320)
T ss_dssp             HHHHHHHTTCS---EEEEESC--CHHHHHHHHHHHTTSSEEEEESSCCHHHHHHHHTTTCSEEECTHHHH
T ss_pred             HHHHHHHcCCC---EEEECCC--CHHHHHHHHHHhCCCCeEEEECCCCHHHHHHHHHcCCCEEEECceec
Confidence            34444456654   7777753  34556666653  3689999999999999999999999999999654

>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}

Probab=89.44  E-value=11  Score=33.59  Aligned_cols=189  Identities=13%  Similarity=0.073  Sum_probs=112.2

Q ss_pred             HHHHHHHHHHcCCCcceEEEecCC----------cccHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCe
Q 021156           95 AAEFANLYKEDGLTGGHAIMLGAD----------PLSKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSY  163 (316)
Q Consensus        95 p~e~a~~~~~~G~~~l~lvDLda~----------~~~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~  163 (316)
                      ..++|+...++|++-+.....+.-          ......+.+.+++.++|+..-  +- .++++.+.+. ++.+-||+.
T Consensus        39 a~~~a~~l~~~Ga~~vk~~~fkprts~~~~~g~~~egl~~l~~~~~~~Gl~~~te--~~d~~~~~~l~~~-vd~~kIga~  115 (262)
T 1zco_A           39 IMKVAEFLAEVGIKVLRGGAFKPRTSPYSFQGYGEKALRWMREAADEYGLVTVTE--VMDTRHVELVAKY-SDILQIGAR  115 (262)
T ss_dssp             HHHHHHHHHHTTCCEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHHTCEEEEE--CCCGGGHHHHHHH-CSEEEECGG
T ss_pred             HHHHHHHHHHcCCCEEEEEecccCCCcccccCccHHHHHHHHHHHHHcCCcEEEe--eCCHHhHHHHHhh-CCEEEECcc
Confidence            457788888888875544433311          112334555556677776553  44 4668888788 999999999


Q ss_pred             eecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecC--C-ccc
Q 021156          164 VFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVD--V-EGK  240 (316)
Q Consensus       164 ~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~--~-dG~  240 (316)
                      ..+|    ..+++++.+ .| .-|++    +  .|.        . .+--+..+.+..+...|...+++.-+.  . .+.
T Consensus       116 ~~~n----~~ll~~~a~-~~-kPV~l----k--~G~--------~-~t~~e~~~Av~~i~~~Gn~~i~L~~RG~~~~~~y  174 (262)
T 1zco_A          116 NSQN----FELLKEVGK-VE-NPVLL----K--RGM--------G-NTIQELLYSAEYIMAQGNENVILCERGIRTFETA  174 (262)
T ss_dssp             GTTC----HHHHHHHTT-SS-SCEEE----E--CCT--------T-CCHHHHHHHHHHHHTTTCCCEEEEECCBCCSCCS
T ss_pred             cccC----HHHHHHHHh-cC-CcEEE----e--cCC--------C-CCHHHHHHHHHHHHHCCCCeEEEEECCCCCCCCc
Confidence            9987    899999876 43 22222    2  231        0 011134445566677787655433221  1 111


Q ss_pred             -cCCCCHHHHHHHhhcCCCcE-EEEeCCCCH-----HHHHHHHHhCCCcCEEEEccc------hhhccCcccHHHHHHHH
Q 021156          241 -KLGIDDELVALLGKYSPIPV-TYAGGVTTM-----ADLEKIKVAGIGRVDVTVGSA------LDIFGGNLAYKDVVAWH  307 (316)
Q Consensus       241 -~~G~d~eli~~l~~~~~iPV-IasGGI~s~-----eDi~~l~~~G~g~~gVivG~A------l~~~~g~~~~~~~~~~~  307 (316)
                       ..-.|+..+..+++..+.|| ..+..-.+.     .=.......|  ++|+||-+=      +.-+...++++++.+++
T Consensus       175 ~~~~v~L~ai~~lk~~~~~pVi~d~sH~~g~~~~v~~~~~aAva~G--a~Gl~iE~H~~~d~al~D~~~sl~p~~~~~l~  252 (262)
T 1zco_A          175 TRFTLDISAVPVVKELSHLPIIVDPSHPAGRRSLVIPLAKAAYAIG--ADGIMVEVHPEPEKALSDSQQQLTFDDFLQLL  252 (262)
T ss_dssp             SSSBCCTTHHHHHHHHBSSCEEECSSTTTCSGGGHHHHHHHHHHTT--CSEEEEEBCSSGGGCSSCTTTCBCHHHHHHHH
T ss_pred             ChhhcCHHHHHHHHhhhCCCEEEEcCCCCCccchHHHHHHHHHHcC--CCEEEEEecCCccccCChhhcCCCHHHHHHHH
Confidence             12237778888888878998 555554444     2233444556  999999864      41122447888888777


Q ss_pred             Hh
Q 021156          308 AQ  309 (316)
Q Consensus       308 ~~  309 (316)
                      ++
T Consensus       253 ~~  254 (262)
T 1zco_A          253 KE  254 (262)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>1r2r_A TIM, triosephosphate isomerase; closed loop conformation in the ligand-free state, conformational heterogeneity, TIM-barrel; 1.50A {Oryctolagus cuniculus} SCOP: c.1.1.1 PDB: 1r2s_A 1r2t_A 2jk2_A 1wyi_A 1hti_A 2vom_A 1tph_1* 8tim_A 1sw3_A 1spq_A 1tpb_1* 1tpw_A* 1sw7_A 1tpu_A* 1tpc_1* 1ssd_A 1ssg_A 1sw0_A 1sq7_A 1tpv_A* ...

Probab=89.27  E-value=1.1  Score=40.10  Aligned_cols=137  Identities=13%  Similarity=0.027  Sum_probs=74.7

Q ss_pred             HHHHHHHcCCCEEEeCCeeecC--CCCCHHHHHHHHHHh--cCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHH
Q 021156          146 NSLSYIEEGATHVIVTSYVFNN--GQMDLERLKDLVRVV--GKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLD  221 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~~~~~--~~~~~eli~ei~~~~--G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~  221 (316)
                      ....+.++||+.|+||=.-++.  ++.|...-+++....  | =..++++.-...     -+-.|-..  . -+....+.
T Consensus        79 S~~mL~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~G-L~pI~CvGEtle-----ere~g~t~--~-vv~~Ql~~  149 (248)
T 1r2r_A           79 SPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALSEG-LGVIACIGEKLD-----EREAGITE--K-VVFEQTKV  149 (248)
T ss_dssp             CHHHHHHTTCCEEEESCHHHHHTSCCCHHHHHHHHHHHHHTT-CEEEEEECCCHH-----HHHTTCHH--H-HHHHHHHH
T ss_pred             CHHHHHHcCCCEEEECChhhhcccCCCHHHHHHHHHHHHHCC-CEEEEEcCCcHH-----HHhCCChH--H-HHHHHHHH
Confidence            3778889999999999664432  343333333333333  2 245666642100     00011000  0 01111111


Q ss_pred             HHH-c-CC-CE-EEEeecCCccccCCCCHHHHHHH----h----hc------CCCcEEEEeCCCCHHHHHHHHHhCCCcC
Q 021156          222 FLA-S-YA-DE-FLVHGVDVEGKKLGIDDELVALL----G----KY------SPIPVTYAGGVTTMADLEKIKVAGIGRV  283 (316)
Q Consensus       222 ~~~-~-Ga-~~-ilvtdi~~dG~~~G~d~eli~~l----~----~~------~~iPVIasGGI~s~eDi~~l~~~G~g~~  283 (316)
                      ..+ . .. .- |-|-.+..-||..-.+.+.+.++    +    +.      -.++|+++|+|..-+...-+...+  +|
T Consensus       150 ~l~~~~~~~~~vIAYEPvWAIGTG~~Atpe~a~evh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~d--iD  227 (248)
T 1r2r_A          150 IADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPD--VD  227 (248)
T ss_dssp             HHHTCSCGGGEEEEECCGGGSSSSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHCCEEECSCCCTTTHHHHHTSTT--CC
T ss_pred             HHhhhhhhhceEEEEecHHhhCCCCCCCHHHHHHHHHHHHHHHHHhcChhhcccccEEEcCCcCHhHHHHHHcCCC--CC
Confidence            121 1 11 22 34788889999877766544432    2    11      137999999998866555444444  99


Q ss_pred             EEEEccchhhcc
Q 021156          284 DVTVGSALDIFG  295 (316)
Q Consensus       284 gVivG~Al~~~~  295 (316)
                      |+.||.|.  +.
T Consensus       228 G~LVGgAs--L~  237 (248)
T 1r2r_A          228 GFLVGGAS--LK  237 (248)
T ss_dssp             EEEESGGG--GS
T ss_pred             eeEechHH--hC
Confidence            99999998  64

>3ru6_A Orotidine 5'-phosphate decarboxylase; structural genomics, center for structural genomics of infec diseases (csgid), TIM-barrel; 1.80A {Campylobacter jejuni subsp}

Probab=89.11  E-value=3.9  Score=37.58  Aligned_cols=145  Identities=10%  Similarity=0.082  Sum_probs=79.4

Q ss_pred             HHHHHhC-CCcEEEecCCC----H-H-HHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHH---hcCceEEEeeeeee
Q 021156          126 IEALHAY-PGGLQVGGGIN----S-D-NSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRV---VGKQRLVLDLSCRK  195 (316)
Q Consensus       126 ~~~v~~~-~~pl~vGGGIr----~-e-~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~---~G~~~IvvslD~k~  195 (316)
                      ++.+++. +.++..+-=.-    + + -++.+.++|+|.+.+-..  ..    ++.++.+.+.   +++.-.++.+.+..
T Consensus        68 V~~Lk~~~g~~IflDlKl~DIpnTv~~av~~~a~lGaD~vTVHa~--~G----~~~m~aa~e~a~~~~~~~~llaVtvLT  141 (303)
T 3ru6_A           68 IEELKKVDDFKIFLDLKFHDIPNTMADACEEVSKLGVDMINIHAS--AG----KIAIQEVMTRLSKFSKRPLVLAVSALT  141 (303)
T ss_dssp             HHHHHHHCCCEEEEEEEECSCHHHHHHHHHHHHTTTCSEEEEEGG--GC----HHHHHHHHHHHTTSSSCCEEEEECSCT
T ss_pred             HHHHHHhhCCCEEEEeeeccCchhHHHHHHHHHhcCCCEEEEecc--CC----HHHHHHHHHHHHhcCCCceEEEEEEec
Confidence            3444432 55666665442    1 2 245566789999888443  22    5555555443   43222344454431


Q ss_pred             cCCeeEEEeCCcceecccC----HHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcC-CCcEEEEeCCCCHH
Q 021156          196 KDGKYAIVTDRWQKFSDVY----LDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYS-PIPVTYAGGVTTMA  270 (316)
Q Consensus       196 ~~g~~~v~~~gw~~~~~~~----~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~-~iPVIasGGI~s~e  270 (316)
                      ..+.     ..|.+....+    ...+++...+.|++.++..         ..+.   +.+++.+ +-.+++.+||+-..
T Consensus       142 S~s~-----~~l~~l~~~~~~e~V~~lA~~a~~~G~dGvV~s---------~~E~---~~IR~~~~~~fl~VTPGIr~qG  204 (303)
T 3ru6_A          142 SFDE-----ENFFSIYRQKIEEAVINFSKISYENGLDGMVCS---------VFES---KKIKEHTSSNFLTLTPGIRPFG  204 (303)
T ss_dssp             TCCH-----HHHHHHHSSCHHHHHHHHHHHHHHTTCSEEECC---------TTTH---HHHHHHSCTTSEEEECCCCTTC
T ss_pred             CCCH-----HHHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEC---------HHHH---HHHHHhCCCccEEECCCcCccc
Confidence            0000     0111100112    3456777788899887651         1123   3455444 34688899998431


Q ss_pred             ----------HHHHHHHhCCCcCEEEEccchhhccCc
Q 021156          271 ----------DLEKIKVAGIGRVDVTVGSALDIFGGN  297 (316)
Q Consensus       271 ----------Di~~l~~~G~g~~gVivG~Al~~~~g~  297 (316)
                                .+.++.+.|  ++-+++||++  |..+
T Consensus       205 ~~~~DQ~Rv~t~~~a~~aG--Ad~iVvGr~I--~~a~  237 (303)
T 3ru6_A          205 ETNDDQKRVANLAMARENL--SDYIVVGRPI--YKNE  237 (303)
T ss_dssp             --------CCSHHHHHHTT--CSEEEECHHH--HTSS
T ss_pred             CCcccccccCCHHHHHHcC--CCEEEEChHH--hCCC
Confidence                      466777888  8999999999  7644

>1mo0_A TIM, triosephosphate isomerase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; 1.70A {Caenorhabditis elegans} SCOP: c.1.1.1

Probab=89.01  E-value=1.8  Score=39.30  Aligned_cols=145  Identities=17%  Similarity=0.079  Sum_probs=78.7

Q ss_pred             HHHHHHHcCCCEEEeCCeeecC--CCCCHHHHHHHHHHh--cCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHH
Q 021156          146 NSLSYIEEGATHVIVTSYVFNN--GQMDLERLKDLVRVV--GKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLD  221 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~~~~~--~~~~~eli~ei~~~~--G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~  221 (316)
                      ....+.++||+.|+||=.-++.  ++.|...-+++....  | =..++++.=...     -+-.|-..  . -+....+.
T Consensus        98 S~~mLkd~G~~~ViiGHSERR~~f~Etde~V~~Kv~~Al~~G-L~pI~CvGEtle-----eReag~t~--~-vv~~Ql~~  168 (275)
T 1mo0_A           98 SPAMIKDLGLEWVILGHSERRHVFGESDALIAEKTVHALEAG-IKVVFCIGEKLE-----EREAGHTK--D-VNFRQLQA  168 (275)
T ss_dssp             CHHHHHHTTCCEEEESCHHHHHTSCCCHHHHHHHHHHHHHTT-CEEEEEECCCHH-----HHHTTCHH--H-HHHHHHHH
T ss_pred             CHHHHHHcCCCEEEeCchhhhcccCCCHHHHHHHHHHHHHCC-CEEEEEcCCcHH-----HHhCCChH--H-HHHHHHHH
Confidence            3778889999999999764433  343333333433333  2 345666642100     00011000  0 01111111


Q ss_pred             HHHcCC----CE-EEEeecCCccccCCCCHHHHHHH----h----hc------CCCcEEEEeCCCCHHHHHHHHHhCCCc
Q 021156          222 FLASYA----DE-FLVHGVDVEGKKLGIDDELVALL----G----KY------SPIPVTYAGGVTTMADLEKIKVAGIGR  282 (316)
Q Consensus       222 ~~~~Ga----~~-ilvtdi~~dG~~~G~d~eli~~l----~----~~------~~iPVIasGGI~s~eDi~~l~~~G~g~  282 (316)
                      .. .++    .- |-|-.+..-||..-.+.+.++++    +    +.      -+++|+++|+|..-+...-+...  ++
T Consensus       169 ~l-~~~~~~~~vvIAYEPvWAIGTGktAtpe~aqevh~~IR~~l~~~~~~~~a~~vrILYGGSV~~~N~~el~~~~--di  245 (275)
T 1mo0_A          169 IV-DKGVSWENIVIAYEPVWAIGTGKTASGEQAQEVHEWIRAFLKEKVSPAVADATRIIYGGSVTADNAAELGKKP--DI  245 (275)
T ss_dssp             HH-TTTCCSTTEEEEECCGGGTTTSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHSCEEEESSCCTTTHHHHTTST--TC
T ss_pred             HH-hhhhhhcCEEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhChhhcCcccEEEcCCCCHhhHHHHhcCC--CC
Confidence            12 122    22 34788889999887776644433    2    11      14799999999986555444444  49


Q ss_pred             CEEEEccchhhccCcccHHHHHH
Q 021156          283 VDVTVGSALDIFGGNLAYKDVVA  305 (316)
Q Consensus       283 ~gVivG~Al~~~~g~~~~~~~~~  305 (316)
                      ||+.||.|.  +. +=.|.++++
T Consensus       246 DG~LVGgAS--Lk-a~~F~~Ii~  265 (275)
T 1mo0_A          246 DGFLVGGAS--LK-PDFVKIINA  265 (275)
T ss_dssp             CEEEESGGG--GS-THHHHHHHH
T ss_pred             CeeEechHH--hC-hHHHHHHHH
Confidence            999999999  64 323444443

>1vqt_A Orotidine 5'-phosphate decarboxylase; TM0332, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.00A {Thermotoga maritima} SCOP: c.1.2.3

Probab=89.00  E-value=0.56  Score=40.86  Aligned_cols=134  Identities=13%  Similarity=0.058  Sum_probs=79.7

Q ss_pred             HHHHHHhCCCcEEEecCC----C-H-HHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCC
Q 021156          125 AIEALHAYPGGLQVGGGI----N-S-DNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDG  198 (316)
Q Consensus       125 i~~~v~~~~~pl~vGGGI----r-~-e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g  198 (316)
                      .++.+++.+.++..+-=.    + . ..++.++++|||.|.+....  .    .+.++.+.+...  .-.+.+.+....+
T Consensus        50 ~v~~l~~~~~~v~lD~K~~DI~nT~~~~v~~~~~~GaD~vTvh~~~--G----~~~l~~~~~~~~--~~~~~V~~lts~~  121 (213)
T 1vqt_A           50 IFDELAKRNLKIILDLKFCDIPSTVERSIKSWDHPAIIGFTVHSCA--G----YESVERALSATD--KHVFVVVKLTSME  121 (213)
T ss_dssp             HHHHHHTTTCEEEEEEEECSCHHHHHHHHHHHCCTTEEEEEEEGGG--C----HHHHHHHHHHCS--SEEEEECCCTTSC
T ss_pred             HHHHHHHCCCCEEEEeecccCchHHHHHHHHHHHCCCCEEEEeccC--C----HHHHHHHHHhcC--CCeEEEEEeCCCC
Confidence            445556556777777633    2 2 34778889999999885532  1    456666655431  2233443321000


Q ss_pred             eeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHH---H----
Q 021156          199 KYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMA---D----  271 (316)
Q Consensus       199 ~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~e---D----  271 (316)
                      .     . ++    ......++. .+.|++ ++...            +.++++++.++.| ++.+||+-..   |    
T Consensus       122 ~-----~-l~----~~v~~~a~~-~e~G~d-vV~~~------------~~~~~ir~~~~~~-~v~pGI~~~~~~~dq~rv  176 (213)
T 1vqt_A          122 G-----S-LE----DYMDRIEKL-NKLGCD-FVLPG------------PWAKALREKIKGK-ILVPGIRMEVKADDQKDV  176 (213)
T ss_dssp             C-----C-HH----HHHHHHHHH-HHHTCE-EECCH------------HHHHHHTTTCCSC-EEECCBC---------CC
T ss_pred             H-----H-HH----HHHHHHHHH-hcCCCE-EEEcH------------HHHHHHHHHCCCC-EEECCCCCCCCccchhhc
Confidence            0     0 00    124556777 888998 54321            4566777777768 8888887543   2    


Q ss_pred             --HHHHHHhCCCcCEEEEccchhhccC
Q 021156          272 --LEKIKVAGIGRVDVTVGSALDIFGG  296 (316)
Q Consensus       272 --i~~l~~~G~g~~gVivG~Al~~~~g  296 (316)
                        ..+ .+.|  ++.+++||++  |.-
T Consensus       177 ~t~~~-i~aG--ad~iVvGR~I--~~a  198 (213)
T 1vqt_A          177 VTLEE-MKGI--ANFAVLGREI--YLS  198 (213)
T ss_dssp             BCHHH-HTTT--CSEEEESHHH--HTS
T ss_pred             CCHHH-HHCC--CCEEEEChhh--cCC
Confidence              567 7777  8999999999  643

>1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1

Probab=88.98  E-value=1.6  Score=38.52  Aligned_cols=114  Identities=17%  Similarity=0.061  Sum_probs=65.6

Q ss_pred             HHHHHHHHcCCCEE--EeCCeeecCCCC--CHHHHHHHHHHhcCceEEE-eeeeeecCCeeEEEeCCcceecccCHHHHH
Q 021156          145 DNSLSYIEEGATHV--IVTSYVFNNGQM--DLERLKDLVRVVGKQRLVL-DLSCRKKDGKYAIVTDRWQKFSDVYLDERV  219 (316)
Q Consensus       145 e~~~~~l~~Gad~V--Vigt~~~~~~~~--~~eli~ei~~~~G~~~Ivv-slD~k~~~g~~~v~~~gw~~~~~~~~~e~a  219 (316)
                      .+++. ++.||+-|  |++-..+.++..  -.+.+.++++..+ +.++. -+.            .+..  +.-.....+
T Consensus        71 ~E~~~-i~~GAdEID~Vinig~~~~g~~~~v~~ei~~v~~a~~-~~~lKvIlE------------t~~L--t~eei~~a~  134 (226)
T 1vcv_A           71 ALVSR-LAEVADEIDVVAPIGLVKSRRWAEVRRDLISVVGAAG-GRVVKVITE------------EPYL--RDEERYTLY  134 (226)
T ss_dssp             HHHHH-HTTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTT-TSEEEEECC------------GGGC--CHHHHHHHH
T ss_pred             HHHHH-HHCCCCEEEEecchhhhcCCCHHHHHHHHHHHHHHHc-CCCceEEEe------------ccCC--CHHHHHHHH
Confidence            56888 99999964  444443333321  1345555555553 22111 111            1111  111345567


Q ss_pred             HHHHHcCCCEEEEeecCCcccc-----------CCCC---HHHHHHHhhcCC--CcEEEEeCCCCHHHHHHHHHh
Q 021156          220 LDFLASYADEFLVHGVDVEGKK-----------LGID---DELVALLGKYSP--IPVTYAGGVTTMADLEKIKVA  278 (316)
Q Consensus       220 ~~~~~~Ga~~ilvtdi~~dG~~-----------~G~d---~eli~~l~~~~~--iPVIasGGI~s~eDi~~l~~~  278 (316)
                      +...+.|++.|= |+   .|..           .|..   .+++++..+.++  +||-++|||++.+|+.++.++
T Consensus       135 ~ia~eaGADfVK-TS---TGf~~~~~~~~~~~~~gAt~~dv~lm~~~i~~~g~~v~vKaaGGirt~~~al~~i~a  205 (226)
T 1vcv_A          135 DIIAEAGAHFIK-SS---TGFAEEAYAARQGNPVHSTPERAAAIARYIKEKGYRLGVKMAGGIRTREQAKAIVDA  205 (226)
T ss_dssp             HHHHHHTCSEEE-CC---CSCCCHHHHHHTTCCSSCCHHHHHHHHHHHHHHTCCCEEEEESSCCSHHHHHHHHHH
T ss_pred             HHHHHcCCCEEE-eC---CCCCccccccccCCCCCCCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHH
Confidence            778889999663 33   2332           3444   445554422244  899999999999999999999

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=88.90  E-value=0.36  Score=47.21  Aligned_cols=38  Identities=24%  Similarity=0.344  Sum_probs=33.4

Q ss_pred             HhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecC
Q 021156          130 HAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNN  167 (316)
Q Consensus       130 ~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~  167 (316)
                      .+.++|++..|||+ ..|+.+++.+||+.|.+|+.+...
T Consensus       325 ~~~~vpVia~GGi~~~~di~kalalGA~~v~~g~~~~~~  363 (486)
T 2cu0_A          325 QEYGLYVIADGGIRYSGDIVKAIAAGADAVMLGNLLAGT  363 (486)
T ss_dssp             HHHTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTB
T ss_pred             HHcCCcEEecCCCCCHHHHHHHHHcCCCceeeChhhhcC
Confidence            34579999999998 599999999999999999998763

>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1

Probab=88.75  E-value=1.3  Score=40.68  Aligned_cols=66  Identities=20%  Similarity=0.278  Sum_probs=47.7

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHhC--CCcEEEecCCCHHHHHHHHHcCCCEEEeCCeee
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAY--PGGLQVGGGINSDNSLSYIEEGATHVIVTSYVF  165 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~--~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~  165 (316)
                      +..+ ++...++|++   +|-||.  .....+.+.++.+  .+|+.+-|||+.+.+..+.++|+|.+.+|+..+
T Consensus       217 tlee-~~eA~~aGaD---~I~ld~--~~~e~l~~~v~~~~~~~~I~ASGGIt~~~i~~~a~~GvD~isvGsli~  284 (296)
T 1qap_A          217 NLDE-LDDALKAGAD---IIMLDN--FNTDQMREAVKRVNGQARLEVSGNVTAETLREFAETGVDFISVGALTK  284 (296)
T ss_dssp             SHHH-HHHHHHTTCS---EEEESS--CCHHHHHHHHHTTCTTCCEEECCCSCHHHHHHHHHTTCSEEECSHHHH
T ss_pred             CHHH-HHHHHHcCCC---EEEECC--CCHHHHHHHHHHhCCCCeEEEECCCCHHHHHHHHHcCCCEEEEeHHHc
Confidence            4433 4444566755   666665  3345566666654  589999999998999999999999999998543

>2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A

Probab=88.60  E-value=1.9  Score=39.45  Aligned_cols=180  Identities=14%  Similarity=0.071  Sum_probs=102.6

Q ss_pred             CHHHHHHHHHHcCCCcceEEEec--C--C-----cccHHHHHH----HHHhCCCcEEEec-----CCC-H-HHHHHHHHc
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLG--A--D-----PLSKAAAIE----ALHAYPGGLQVGG-----GIN-S-DNSLSYIEE  153 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLd--a--~-----~~~~~~i~~----~v~~~~~pl~vGG-----GIr-~-e~~~~~l~~  153 (316)
                      |+. .|+...++|++.+++=+..  .  +     .....++..    +.+.++.||++++     +.. . +.++++.++
T Consensus        24 D~~-sA~~~~~aG~~ai~vs~~~~a~~~G~pD~~~vt~~em~~~~~~I~~~~~~PviaD~d~Gyg~~~~~~~~v~~l~~a  102 (290)
T 2hjp_A           24 NPL-VAKLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTVSIPLIADIDTGFGNAVNVHYVVPQYEAA  102 (290)
T ss_dssp             SHH-HHHHHHHHTCSEEEECHHHHHHHTTSCTTTCSCHHHHHHHHHHHHTTCSSCEEEECTTTTSSHHHHHHHHHHHHHH
T ss_pred             CHH-HHHHHHHcCCCEEEEChHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCHHHHHHHHHHHHHh
Confidence            666 7888888999988877632  1  1     123334333    3345788998853     232 2 668889999


Q ss_pred             CCCEEEe-CCeeec--------CCCC-CH-HHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCc-ceecccCHHHHHHH
Q 021156          154 GATHVIV-TSYVFN--------NGQM-DL-ERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRW-QKFSDVYLDERVLD  221 (316)
Q Consensus       154 Gad~VVi-gt~~~~--------~~~~-~~-eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw-~~~~~~~~~e~a~~  221 (316)
                      ||.-|-| |....+        ..++ +. +.++++....- .+..  -|++.     .-++... ....-.+.++.++.
T Consensus       103 Ga~gv~iED~~~~k~cgH~~~~~k~l~p~~e~~~kI~Aa~~-a~~~--~~~~i-----~aRtda~~a~~g~~~ai~Ra~a  174 (290)
T 2hjp_A          103 GASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATA-ARAD--RDFVV-----IARVEALIAGLGQQEAVRRGQA  174 (290)
T ss_dssp             TCSEEEEECBCSSCCC-------CCBCCHHHHHHHHHHHHH-HCSS--TTSEE-----EEEECTTTTTCCHHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCccccccccCCCcccCHHHHHHHHHHHHH-hccc--CCcEE-----EEeehHhhccccHHHHHHHHHH
Confidence            9999887 332111        1111 22 34545543321 1100  12211     1122211 10011257888999


Q ss_pred             HHHcCCCEEEEee-cCCccccCCCCHHHHHHHhhcCC--CcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          222 FLASYADEFLVHG-VDVEGKKLGIDDELVALLGKYSP--IPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       222 ~~~~Ga~~ilvtd-i~~dG~~~G~d~eli~~l~~~~~--iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      +.+.|++.+++.. +        ++.+.++++.+.++  +|++++-.-...-+..+|.++|+ +.-|+.|.++
T Consensus       175 y~eAGAd~i~~e~~~--------~~~~~~~~i~~~~~~~vP~i~n~~~~~~~~~~eL~~lG~-v~~v~~~~~~  238 (290)
T 2hjp_A          175 YEEAGADAILIHSRQ--------KTPDEILAFVKSWPGKVPLVLVPTAYPQLTEADIAALSK-VGIVIYGNHA  238 (290)
T ss_dssp             HHHTTCSEEEECCCC--------SSSHHHHHHHHHCCCSSCEEECGGGCTTSCHHHHHTCTT-EEEEEECSHH
T ss_pred             HHHcCCcEEEeCCCC--------CCHHHHHHHHHHcCCCCCEEEeccCCCCCCHHHHHhcCC-eeEEEechHH
Confidence            9999999988766 4        34567889988887  99998621011113566666651 6778888777

>1wue_A Mandelate racemase/muconate lactonizing enzyme FA protein; structural genomics, unknown function, nysgxrc target T2185; 2.10A {Enterococcus faecalis} SCOP: c.1.11.2 d.54.1.1

Probab=88.44  E-value=3  Score=39.30  Aligned_cols=134  Identities=12%  Similarity=0.050  Sum_probs=86.7

Q ss_pred             HHHHHHHHcCCCEEE--eCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH
Q 021156          145 DNSLSYIEEGATHVI--VTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF  222 (316)
Q Consensus       145 e~~~~~l~~Gad~VV--igt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~  222 (316)
                      ++++++.+.|...+=  +|  ...    +.+.++.+.+.+ + .+-+.+|+   |+       +|...   +. ++++.+
T Consensus       167 ~~a~~~~~~G~~~~KiKvg--~~~----d~~~v~avr~a~-~-~~~l~vDa---N~-------~~~~~---~a-~~~~~l  224 (386)
T 1wue_A          167 KQVQLAVEKGYQRVKLKIR--PGY----DVEPVALIRQHF-P-NLPLMVDA---NS-------AYTLA---DL-PQLQRL  224 (386)
T ss_dssp             HHHHHHHHTTCSCEEEECB--TTB----SHHHHHHHHHHC-T-TSCEEEEC---TT-------CCCGG---GH-HHHHGG
T ss_pred             HHHHHHHHhhhheEEEeeC--cHH----HHHHHHHHHHhC-C-CCeEEEeC---CC-------CCCHH---HH-HHHHHH
Confidence            456777788876543  33  123    488999998888 4 36688887   33       45432   24 666667


Q ss_pred             HHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHH
Q 021156          223 LASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKD  302 (316)
Q Consensus       223 ~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~  302 (316)
                      .+.++..|  =     .=...-|++.++++++.+++||.+.=-+.+..|+.++++.+ .++.+.+=-+-  .+|-....+
T Consensus       225 ~~~~i~~i--E-----qP~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~-a~d~i~ik~~~--~GGit~~~~  294 (386)
T 1wue_A          225 DHYQLAMI--E-----QPFAADDFLDHAQLQRELKTRICLDENIRSLKDCQVALALG-SCRSINLKIPR--VGGIHEALK  294 (386)
T ss_dssp             GGSCCSCE--E-----CCSCTTCSHHHHHHHTTCSSCEEECTTCCSHHHHHHHHHHT-CCSEEEECHHH--HTSHHHHHH
T ss_pred             HhCCCeEE--e-----CCCCcccHHHHHHHHHhcCCCEEeCCccCCHHHHHHHHHcC-CCCEEEEchhh--hCCHHHHHH
Confidence            66655432  1     11122378889999988899988877788999999999987 36666665444  455434445


Q ss_pred             HHHHHHhh
Q 021156          303 VVAWHAQQ  310 (316)
Q Consensus       303 ~~~~~~~~  310 (316)
                      +.++++++
T Consensus       295 i~~~A~~~  302 (386)
T 1wue_A          295 IAAFCQEN  302 (386)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHC
Confidence            55555553

>3pm6_A Putative fructose-bisphosphate aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.20A {Coccidioides immitis}

Probab=88.36  E-value=5.2  Score=36.81  Aligned_cols=161  Identities=14%  Similarity=0.095  Sum_probs=94.1

Q ss_pred             HHHHhCCCcE--EEecCCCHHHHHHHHHc--------CCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeec
Q 021156          127 EALHAYPGGL--QVGGGINSDNSLSYIEE--------GATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKK  196 (316)
Q Consensus       127 ~~v~~~~~pl--~vGGGIr~e~~~~~l~~--------Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~  196 (316)
                      ...++..+|+  -.+=|-..+.+++++++        |.+.|.++...+.- +-|.+..+++++...+-.+.+-.-+=..
T Consensus        76 ~~A~~~~VPVaLHlDHg~~~e~i~~ai~~~~~~~~~~GFtSVMiDgS~~p~-eENi~~Tk~vv~~ah~~gvsVEaElG~i  154 (306)
T 3pm6_A           76 SACRAASVPITLHLDHAQDPEIIKRAADLSRSETHEPGFDSIMVDMSHFSK-EENLRLTRELVAYCNARGIATEAEPGRI  154 (306)
T ss_dssp             HHHHHCSSCEEEEEEEECCHHHHHHHHHTC------CCCSEEEECCTTSCH-HHHHHHHHHHHHHHHTTTCEEEECSSBC
T ss_pred             HHHHHCCCCEEEEcCCCCCHHHHHHHHHhhhhccCCCCCCEEEEeCCCCCH-HHHHHHHHHHHHHHHHcCCeEEEEeeee
Confidence            3334455554  56667667889999999        99999997665421 0025666666655422222222222000


Q ss_pred             CCe-eEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccC----CCCHHHHHHHhhcC--CCcEEEEeCCCCH
Q 021156          197 DGK-YAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKL----GIDDELVALLGKYS--PIPVTYAGGVTTM  269 (316)
Q Consensus       197 ~g~-~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~----G~d~eli~~l~~~~--~iPVIasGGI~s~  269 (316)
                      +|. .-+...+-.+..--++.+ +.++.+.|++.+-+.-=+.-|.+.    ..|++.++++.+.+  ++|+..-||=+.+
T Consensus       155 gG~Edgv~~~~~~~~~yT~Pee-a~~Fv~TgvD~LAvaiGt~HG~Yk~~~p~Ld~~~L~~I~~~v~~~vpLVlHGgSG~p  233 (306)
T 3pm6_A          155 EGGEDGVQDTVDLEGVLTTPEE-SEEFVATGINWLAPAFGNVHGNYGPRGVQLDYERLQRINEAVGERVGLVLHGADPFT  233 (306)
T ss_dssp             CCCBTTBCCCTTCCCBCCCHHH-HHHHHTTTCSEECCCSSCCSSCCCTTCCCCCHHHHHHHHHHHTTTSEEEECSCTTCC
T ss_pred             ccccCCccccccccccCCCHHH-HHHHHHcCCCEEEEEcCccccCcCCCCCccCHHHHHHHHHHhCCCCCEEeeCCCCCC
Confidence            110 000000000001124544 555558999965322113335443    24999999999876  7999999987665


Q ss_pred             -HHHHHHHHhCCCcCEEEEccch
Q 021156          270 -ADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       270 -eDi~~l~~~G~g~~gVivG~Al  291 (316)
                       ++++++.+.|  +..+=|++.+
T Consensus       234 ~e~i~~ai~~G--V~KiNi~Tdl  254 (306)
T 3pm6_A          234 KEIFEKCIERG--VAKVNVNRAV  254 (306)
T ss_dssp             HHHHHHHHHTT--EEEEEESHHH
T ss_pred             HHHHHHHHHcC--CeEEEeChHH
Confidence             4588888888  9889999876

>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A

Probab=88.24  E-value=2.8  Score=38.05  Aligned_cols=92  Identities=16%  Similarity=0.176  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHcCCCEEEEeecCCccccCCCC--HHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHh-C-CCcCEEEEc
Q 021156          215 LDERVLDFLASYADEFLVHGVDVEGKKLGID--DELVALLGKYS--PIPVTYAGGVTTMADLEKIKVA-G-IGRVDVTVG  288 (316)
Q Consensus       215 ~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d--~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~-G-~g~~gVivG  288 (316)
                      +...++.+.+.|++.+++..-+-++..-..+  .++++...+.+  ++|||++-|-.+.++..++.+. - .|++++++-
T Consensus        24 l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~  103 (292)
T 2ojp_A           24 LKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTV  103 (292)
T ss_dssp             HHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHTTTSSCSEEEEE
T ss_pred             HHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHhcCCCEEEEC
Confidence            4567788889999999888776555443332  23555555433  5899999888777777666543 2 269999999


Q ss_pred             cchhhccCcccHHHHHHHHHh
Q 021156          289 SALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       289 ~Al~~~~g~~~~~~~~~~~~~  309 (316)
                      .-.  |.. .+-+++.++.++
T Consensus       104 ~P~--y~~-~s~~~l~~~f~~  121 (292)
T 2ojp_A          104 TPY--YNR-PSQEGLYQHFKA  121 (292)
T ss_dssp             CCC--SSC-CCHHHHHHHHHH
T ss_pred             CCC--CCC-CCHHHHHHHHHH
Confidence            988  754 478888887655

>2h9a_A Carbon monoxide dehydrogenase corrinoid/iron- sulfur protein, gamma subunit; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_A*

Probab=88.19  E-value=0.56  Score=45.62  Aligned_cols=115  Identities=12%  Similarity=0.018  Sum_probs=73.8

Q ss_pred             HHHHHH-hCCCcEEEecCCCHHHHHHHHHcCC-CEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEE
Q 021156          125 AIEALH-AYPGGLQVGGGINSDNSLSYIEEGA-THVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAI  202 (316)
Q Consensus       125 i~~~v~-~~~~pl~vGGGIr~e~~~~~l~~Ga-d~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v  202 (316)
                      +++.++ .+++|+.++  -+.+-+++.+++|+ .+.+|++....|    .+.+.+++.+|+..-++.+-|+         
T Consensus       146 ~Vk~V~e~~dvPlsID--~dp~vleaale~~~d~~pLIns~t~en----~~~~~~la~~y~~~vV~~~~~l---------  210 (445)
T 2h9a_A          146 AVATAREVTDLPFILI--GTPEQLAAALETEGANNPLLYAATADN----YEQMVELAKKYNVPLTVSAKGL---------  210 (445)
T ss_dssp             HHHHHHHHCCSCEEEE--SCHHHHHHHHHHHGGGCCEEEEECTTT----HHHHHHHHHHHTCCEEEECSSH---------
T ss_pred             HHHHHHHhcCCCEEEE--CCHHHHHHHHHhcCCCCCEEEECCHHH----HHHHHHHHHHhCCeEEEEcCCH---------
Confidence            344443 478999999  65799999999998 578888888776    7888888899964333322111         


Q ss_pred             EeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCC-CHHHHHHHh---h--cCCCcEEEEeC
Q 021156          203 VTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGI-DDELVALLG---K--YSPIPVTYAGG  265 (316)
Q Consensus       203 ~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~-d~eli~~l~---~--~~~iPVIasGG  265 (316)
                                ..+.+..+.+.+.|+..|++-... .+...-+ +++.+++.+   .  ....|++.+=+
T Consensus       211 ----------~~l~~lv~~a~~~Gi~~IiLDP~~-~~~~~sl~~~~~IR~~al~~~d~~lg~P~i~~vs  268 (445)
T 2h9a_A          211 ----------DALAELVQKITALGYKNLILDPQP-ENISEGLFYQTQIRRLAIKKLFRPFGYPTIAFAL  268 (445)
T ss_dssp             ----------HHHHHHHHHHHHTTCCCEEEECCC-SSHHHHHHHHHHHHHHHHHSCCGGGCSCBEEECC
T ss_pred             ----------HHHHHHHHHHHHCCCCcEEEcCCc-hhHHHHHHHHHHHHHhhhcCCCcccCCCeeecCC
Confidence                      136678889999999877632221 1111111 555666653   1  24567776653

>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*

Probab=88.05  E-value=0.61  Score=42.63  Aligned_cols=65  Identities=17%  Similarity=0.181  Sum_probs=46.8

Q ss_pred             HHHHHHHHcCCCcceEEEecCCcccHHHHHHHHH---h--CCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeec
Q 021156           97 EFANLYKEDGLTGGHAIMLGADPLSKAAAIEALH---A--YPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        97 e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~---~--~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      +-++...++|++   ++-||.-  +...+.+.++   .  ..+++.+-|||+.+.+..+.+.|+|.+++|+....
T Consensus       205 eea~eal~aGaD---~I~LDn~--~~~~~~~~v~~l~~~~~~v~ieaSGGIt~~~i~~~a~tGVD~isvG~l~~~  274 (284)
T 1qpo_A          205 EQLDAVLPEKPE---LILLDNF--AVWQTQTAVQRRDSRAPTVMLESSGGLSLQTAATYAETGVDYLAVGALTHS  274 (284)
T ss_dssp             HHHHHHGGGCCS---EEEEETC--CHHHHHHHHHHHHHHCTTCEEEEESSCCTTTHHHHHHTTCSEEECGGGTSS
T ss_pred             HHHHHHHHcCCC---EEEECCC--CHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHhcCCCEEEECHHHcC
Confidence            445555556765   6777753  3344444443   2  25899999999999999999999999999996654

>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}

Probab=87.95  E-value=2.3  Score=37.64  Aligned_cols=67  Identities=15%  Similarity=-0.070  Sum_probs=53.3

Q ss_pred             CHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEc
Q 021156          214 YLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVG  288 (316)
Q Consensus       214 ~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG  288 (316)
                      +..++++.+.+.|++.+=++-.+.+      -.+.++++++..+-.++..|.+-+.++++.+.++|  ++.++..
T Consensus        47 ~a~~~a~al~~gGi~~iEvt~~t~~------a~e~I~~l~~~~~~~~iGaGTVlt~~~a~~Ai~AG--A~fIvsP  113 (232)
T 4e38_A           47 DIIPLGKVLAENGLPAAEITFRSDA------AVEAIRLLRQAQPEMLIGAGTILNGEQALAAKEAG--ATFVVSP  113 (232)
T ss_dssp             GHHHHHHHHHHTTCCEEEEETTSTT------HHHHHHHHHHHCTTCEEEEECCCSHHHHHHHHHHT--CSEEECS
T ss_pred             HHHHHHHHHHHCCCCEEEEeCCCCC------HHHHHHHHHHhCCCCEEeECCcCCHHHHHHHHHcC--CCEEEeC
Confidence            5789999999999997766554332      35789999877655788899999999999999999  6666543

>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}

Probab=87.88  E-value=0.71  Score=42.50  Aligned_cols=67  Identities=16%  Similarity=0.229  Sum_probs=49.2

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHh--CCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeec
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHA--YPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~--~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      +..+ ++...++|+   .+|.||.-  ....+.+.++.  -.+++.+-|||+.+.+..+.+.|+|.+.+|+....
T Consensus       218 tlde-~~eAl~aGa---D~I~LDn~--~~~~l~~av~~i~~~v~ieaSGGI~~~~i~~~a~tGVD~isvG~lt~s  286 (298)
T 3gnn_A          218 TLDQ-LRTALAHGA---RSVLLDNF--TLDMMRDAVRVTEGRAVLEVSGGVNFDTVRAIAETGVDRISIGALTKD  286 (298)
T ss_dssp             SHHH-HHHHHHTTC---EEEEEESC--CHHHHHHHHHHHTTSEEEEEESSCSTTTHHHHHHTTCSEEECGGGGTS
T ss_pred             CHHH-HHHHHHcCC---CEEEECCC--CHHHHHHHHHHhCCCCeEEEEcCCCHHHHHHHHHcCCCEEEECCeecC
Confidence            4444 444445665   47888853  34556666653  35789999999999999999999999999997654

>3s5s_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium; 2.40A {Sorangium cellulosum}

Probab=87.52  E-value=4.7  Score=38.10  Aligned_cols=137  Identities=15%  Similarity=0.021  Sum_probs=85.6

Q ss_pred             HHHHHHHHcCCCE--EEeCCe-eecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHH
Q 021156          145 DNSLSYIEEGATH--VIVTSY-VFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLD  221 (316)
Q Consensus       145 e~~~~~l~~Gad~--VVigt~-~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~  221 (316)
                      ++++++.+.|...  +=+|.. ...    +.+.++.+.+.+| + +-+.+|.   |+       +|...   +..++++.
T Consensus       150 ~~a~~~~~~G~~~iKlKvg~~~~~~----d~~~v~avR~~~~-~-~~L~vDa---N~-------~w~~~---~A~~~~~~  210 (389)
T 3s5s_A          150 EAARRAAAMGFRALKVKVGGRLAAS----DPARIEAIHAAAP-G-ASLILDG---NG-------GLTAG---EALALVAH  210 (389)
T ss_dssp             HHHHHHHHHTCCEEEEECCGGGTTT----HHHHHHHHHHHCT-T-CEEEEEC---TT-------CSCHH---HHHHHHHH
T ss_pred             HHHHHHHHcCCCeEEEEecCCChHH----HHHHHHHHHHhCC-C-CeEEEEC---CC-------CCCHH---HHHHHHHH
Confidence            4577788889775  445654 233    4899999999996 4 4788887   33       56432   34566677


Q ss_pred             HHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHH
Q 021156          222 FLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYK  301 (316)
Q Consensus       222 ~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~  301 (316)
                      +.+...+-..+=.     =...-|++.++++++.+++||.+.=-+.+..|+.++++.+ .++ ++.=+..  .+|-....
T Consensus       211 L~~~~~~i~~iEe-----P~~~~d~~~~~~l~~~~~iPIa~dEs~~~~~~~~~~i~~~-a~d-~v~~k~~--~GGit~~~  281 (389)
T 3s5s_A          211 ARRLGADVALLEQ-----PVPRDDWDGMKEVTRRAGVDVAADESAASAEDVLRVAAER-AAT-VVNIKLM--KGGIAEAL  281 (389)
T ss_dssp             HHHTTCEEEEEEC-----CSCTTCHHHHHHHHHHSSSCEEESTTCSSHHHHHHHHHTT-CCS-EEEECHH--HHHHHHHH
T ss_pred             HhhCCCCeEEEEC-----CCCcccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHcC-CCC-EEEecCC--CCCHHHHH
Confidence            7333333212211     1122389999999988999988887899999999999988 244 4444444  33322333


Q ss_pred             HHHHHHHh
Q 021156          302 DVVAWHAQ  309 (316)
Q Consensus       302 ~~~~~~~~  309 (316)
                      ++.+++++
T Consensus       282 ~i~~~A~~  289 (389)
T 3s5s_A          282 DIAAVARA  289 (389)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44444444

>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406}

Probab=87.50  E-value=8.7  Score=35.42  Aligned_cols=198  Identities=16%  Similarity=0.046  Sum_probs=101.6

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHhC-CCcEEEecCCCHHHHHHHHHc----CCCEEEeC---Cee
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAY-PGGLQVGGGINSDNSLSYIEE----GATHVIVT---SYV  164 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~-~~pl~vGGGIr~e~~~~~l~~----Gad~VVig---t~~  164 (316)
                      .+=+++++.+.+.|++.+-+-.--..+...+.+.++.+.. +..+++=+=-+.+++++.+++    |++.|-+-   |..
T Consensus        28 ~~Kl~ia~~L~~~Gv~~IE~g~p~~~~~d~e~v~~i~~~~~~~~i~~l~r~~~~~i~~a~~al~~ag~~~v~i~~s~Sd~  107 (325)
T 3eeg_A           28 EEKIIVAKALDELGVDVIEAGFPVSSPGDFNSVVEITKAVTRPTICALTRAKEADINIAGEALRFAKRSRIHTGIGSSDI  107 (325)
T ss_dssp             THHHHHHHHHHHHTCSEEEEECTTSCHHHHHHHHHHHHHCCSSEEEEECCSCHHHHHHHHHHHTTCSSEEEEEEEECSHH
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCCCCHhHHHHHHHHHHhCCCCEEEEeecCCHHHHHHHHHhhcccCCCEEEEEecccHH
Confidence            4677899999999988554431101111222333333433 333433221235778888887    98887552   111


Q ss_pred             ecC---CC---CCHHHHHHH---HHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeec
Q 021156          165 FNN---GQ---MDLERLKDL---VRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGV  235 (316)
Q Consensus       165 ~~~---~~---~~~eli~ei---~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi  235 (316)
                      +..   ++   -..+.+.+.   ++..| ..+.  +++-  +        .... ..-.+.++++.+.+.|+++|.+-| 
T Consensus       108 ~~~~~l~~s~~e~l~~~~~~v~~a~~~g-~~v~--f~~~--d--------~~~~-~~~~~~~~~~~~~~~G~~~i~l~D-  172 (325)
T 3eeg_A          108 HIEHKLRSTRENILEMAVAAVKQAKKVV-HEVE--FFCE--D--------AGRA-DQAFLARMVEAVIEAGADVVNIPD-  172 (325)
T ss_dssp             HHC----CCCTTGGGTTHHHHHHHHTTS-SEEE--EEEE--T--------GGGS-CHHHHHHHHHHHHHHTCSEEECCB-
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHCC-CEEE--EEcc--c--------cccc-hHHHHHHHHHHHHhcCCCEEEecC-
Confidence            110   00   012223333   33344 2232  3321  1        1111 111356889999999999875544 


Q ss_pred             CCccccCCCCH-HHHHHHhhcCC----CcEEEEe----CCCCHHHHHHHHHhCC-CcCEEEEccchhhccCcccHHHHHH
Q 021156          236 DVEGKKLGIDD-ELVALLGKYSP----IPVTYAG----GVTTMADLEKIKVAGI-GRVDVTVGSALDIFGGNLAYKDVVA  305 (316)
Q Consensus       236 ~~dG~~~G~d~-eli~~l~~~~~----iPVIasG----GI~s~eDi~~l~~~G~-g~~gVivG~Al~~~~g~~~~~~~~~  305 (316)
                       ..|.+..... ++++.+++.++    +|+-+-+    |... .-.....++|. -+++.+-|-+=  -.|+.++++++.
T Consensus       173 -T~G~~~P~~v~~lv~~l~~~~~~~~~~~i~~H~Hnd~GlA~-AN~laA~~aGa~~vd~tv~GlGe--r~GN~~lE~vv~  248 (325)
T 3eeg_A          173 -TTGYMLPWQYGERIKYLMDNVSNIDKAILSAHCHNDLGLAT-ANSLAALQNGARQVECTINGIGE--RAGNTALEEVVM  248 (325)
T ss_dssp             -SSSCCCHHHHHHHHHHHHHHCSCGGGSEEEECBCCTTSCHH-HHHHHHHHHTCCEEEEBGGGCCS--TTCCCBHHHHHH
T ss_pred             -ccCCcCHHHHHHHHHHHHHhCCCCCceEEEEEeCCCCCHHH-HHHHHHHHhCCCEEEEecccccc--cccchhHHHHHH
Confidence             4466554433 47788877654    6665433    2233 33444555672 13333333333  347889999988


Q ss_pred             HHHh
Q 021156          306 WHAQ  309 (316)
Q Consensus       306 ~~~~  309 (316)
                      .++.
T Consensus       249 ~L~~  252 (325)
T 3eeg_A          249 AMEC  252 (325)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            7763

>2pge_A MENC; OSBS, NYSGXRC, PSI-II, structural genomics, protein structure initiative; 1.60A {Desulfotalea psychrophila LSV54}

Probab=87.49  E-value=3  Score=39.13  Aligned_cols=139  Identities=11%  Similarity=0.089  Sum_probs=88.5

Q ss_pred             HHHHHHHHcCCCEEE--eCCe-eecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHH
Q 021156          145 DNSLSYIEEGATHVI--VTSY-VFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLD  221 (316)
Q Consensus       145 e~~~~~l~~Gad~VV--igt~-~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~  221 (316)
                      ++++++.+.|...+=  +|.. ...    +.+.++.+.+.+|...+.+.+|+   ++       +|..   -+..++++.
T Consensus       168 ~~a~~~~~~G~~~~K~Kvg~~~~~~----d~~~v~avr~~~g~~~~~l~vDa---N~-------~~~~---~~a~~~~~~  230 (377)
T 2pge_A          168 EQIEAKLAEGYGCLKLKIGAIDFDK----ECALLAGIRESFSPQQLEIRVDA---NG-------AFSP---ANAPQRLKR  230 (377)
T ss_dssp             HHHHHHHHTTCSEEEEEC---CHHH----HHHHHHHHHHHSCTTTCEEEEEC---TT-------BBCT---TTHHHHHHH
T ss_pred             HHHHHHHHHhhhhheeecCCCChHH----HHHHHHHHHHHcCCCCceEEEEC---CC-------CCCH---HHHHHHHHH
Confidence            567778888877543  4532 223    37889999999972356788998   33       4542   246788888


Q ss_pred             HHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHH--HHHHHHhCCCcCEEEEccchhhccCccc
Q 021156          222 FLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMAD--LEKIKVAGIGRVDVTVGSALDIFGGNLA  299 (316)
Q Consensus       222 ~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eD--i~~l~~~G~g~~gVivG~Al~~~~g~~~  299 (316)
                      +.+.++..|  =+     =...-|++.++++++.+++||.+.=-+.+..|  +.++++.+ .++.+.+=-+-  .+|--.
T Consensus       231 l~~~~i~~i--Eq-----P~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~~~i~~~-a~d~i~ik~~~--~GGit~  300 (377)
T 2pge_A          231 LSQFHLHSI--EQ-----PIRQHQWSEMAALCANSPLAIALDEELIGLGAEQRSAMLDAI-RPQYIILKPSL--LGGFHY  300 (377)
T ss_dssp             HHTTCCSEE--EC-----CBCSSCHHHHHHHHHHCSSCEEESGGGTTCCTHHHHHHHHHH-CCSEEEECHHH--HTSHHH
T ss_pred             HhcCCCcEE--Ec-----cCCcccHHHHHHHHhhCCCcEEECCccCCcchHHHHHHHHhC-CCCEEEECchh--cCCHHH
Confidence            888776633  11     11223899999999888899887777777777  77888776 36666665444  444333


Q ss_pred             HHHHHHHHHhh
Q 021156          300 YKDVVAWHAQQ  310 (316)
Q Consensus       300 ~~~~~~~~~~~  310 (316)
                      ..++.++++++
T Consensus       301 ~~~i~~~A~~~  311 (377)
T 2pge_A          301 AGQWIELARER  311 (377)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHC
Confidence            44444455543

>3cyj_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, isomerase, PSI-2; 2.30A {Rubrobacter xylanophilus dsm 9941}

Probab=87.46  E-value=5.4  Score=37.25  Aligned_cols=147  Identities=16%  Similarity=0.127  Sum_probs=91.0

Q ss_pred             CcEEEecCCC---H----HHHHHHHHcCCCEE--EeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEe
Q 021156          134 GGLQVGGGIN---S----DNSLSYIEEGATHV--IVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVT  204 (316)
Q Consensus       134 ~pl~vGGGIr---~----e~~~~~l~~Gad~V--Vigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~  204 (316)
                      +|+..-+|+.   .    ++++++.+.|...+  =+|.....+    .+.++.+.+.+|+ .+.+.+|+   |+      
T Consensus       132 vp~~~~~g~~~~~~~~~~~~a~~~~~~G~~~~KiKvG~~~~~d----~~~v~avr~a~g~-~~~l~vDa---N~------  197 (372)
T 3cyj_A          132 VPVYGSGGFTSYPLRRLQEQLGGWAAAGIPRVKMKVGREPEKD----PERVRAAREAIGE-SVELMVDA---NG------  197 (372)
T ss_dssp             EEEEEECCCTTSCHHHHHHHHHHHHHTTCCEEEEECCSSGGGH----HHHHHHHHHHHCT-TSEEEEEC---TT------
T ss_pred             ceEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCHHHH----HHHHHHHHHHhCC-CCeEEEEC---CC------
Confidence            4555445552   2    45677778887754  345433333    7899999999975 56788998   33      


Q ss_pred             CCcceecccCHHHHHHHHHHc-CCCEEEEeecCCccccCCCCHHHHHHHhhcCC--CcEEEEeCCCCHHHHHHHHHhCCC
Q 021156          205 DRWQKFSDVYLDERVLDFLAS-YADEFLVHGVDVEGKKLGIDDELVALLGKYSP--IPVTYAGGVTTMADLEKIKVAGIG  281 (316)
Q Consensus       205 ~gw~~~~~~~~~e~a~~~~~~-Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~--iPVIasGGI~s~eDi~~l~~~G~g  281 (316)
                       +|...   +..++++.+.+. ++..|  =    + =...-|++.++++++.++  +||.+.=-+.+..|+.++  .+ .
T Consensus       198 -~~~~~---~a~~~~~~l~~~~~i~~i--E----q-P~~~~d~~~~~~l~~~~~~~ipIa~dE~~~~~~~~~~~--~~-a  263 (372)
T 3cyj_A          198 -AYTRK---QALYWAGAFAREAGISYL--E----E-PVSSEDREGLRLLRDRGPGGVAIAAGEYEWTLPQLHDL--AG-C  263 (372)
T ss_dssp             -CSCHH---HHHHHHHHHHHHHCCCEE--E----C-SSCTTCHHHHHHHHHHSCTTCEEEECTTCCSHHHHHHH--HT-T
T ss_pred             -CCCHH---HHHHHHHHHHhhcCCcEE--E----C-CCCcccHHHHHHHHHhCCCCCCEECCCCccCHHHHHHH--hC-C
Confidence             45421   356777788877 66533  1    1 112238999999988777  688777778899999998  44 2


Q ss_pred             cCEEEEccchhhccCcccHHHHHHHHHhh
Q 021156          282 RVDVTVGSALDIFGGNLAYKDVVAWHAQQ  310 (316)
Q Consensus       282 ~~gVivG~Al~~~~g~~~~~~~~~~~~~~  310 (316)
                      ++.+.+=-.-  .+|-....++.++++++
T Consensus       264 ~d~i~ik~~~--~GGit~~~~i~~~A~~~  290 (372)
T 3cyj_A          264 VDILQADVTR--CGGITGLLRVDGICRGH  290 (372)
T ss_dssp             CSEEEECTTT--TTHHHHHTTHHHHHHHH
T ss_pred             CCEEecCchh--hCCHHHHHHHHHHHHHc
Confidence            6666665444  33322233444444443

>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A

Probab=87.43  E-value=3.4  Score=37.80  Aligned_cols=90  Identities=13%  Similarity=0.089  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHcCCCEEEEeecCCccccCCCC--HHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHH----hCCCcCEEE
Q 021156          215 LDERVLDFLASYADEFLVHGVDVEGKKLGID--DELVALLGKYS--PIPVTYAGGVTTMADLEKIKV----AGIGRVDVT  286 (316)
Q Consensus       215 ~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d--~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~----~G~g~~gVi  286 (316)
                      +...++.+.+.|++.+++..-+-++..-..+  .++++...+.+  ++|||++-|-.+.++..++.+    .|  +++++
T Consensus        38 l~~lv~~li~~Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~G--adavl  115 (304)
T 3l21_A           38 AARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEG--AHGLL  115 (304)
T ss_dssp             HHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHT--CSEEE
T ss_pred             HHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHHcC--CCEEE
Confidence            4567788889999999888876555443332  23555555543  689999988778777766544    45  99999


Q ss_pred             EccchhhccCcccHHHHHHHHHh
Q 021156          287 VGSALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       287 vG~Al~~~~g~~~~~~~~~~~~~  309 (316)
                      +-.-.  |..+ +-+++.++.++
T Consensus       116 v~~P~--y~~~-s~~~l~~~f~~  135 (304)
T 3l21_A          116 VVTPY--YSKP-PQRGLQAHFTA  135 (304)
T ss_dssp             EECCC--SSCC-CHHHHHHHHHH
T ss_pred             ECCCC--CCCC-CHHHHHHHHHH
Confidence            99888  7554 88888887655

>4h2h_A Mandelate racemase/muconate lactonizing enzyme; enolase, mandelate racemase subgroup, enzyme function initia EFI, structural genomics; HET: 0XW; 1.70A {Pelagibaca bermudensis} PDB: 2pmq_A*

Probab=87.32  E-value=3  Score=39.11  Aligned_cols=146  Identities=12%  Similarity=0.074  Sum_probs=89.6

Q ss_pred             CcEEEecCCC-H----HHHHHHHHcCCCE--EEeCCeeecCCCCCHHHHHHHHHHh-cCceEEEeeeeeecCCeeEEEeC
Q 021156          134 GGLQVGGGIN-S----DNSLSYIEEGATH--VIVTSYVFNNGQMDLERLKDLVRVV-GKQRLVLDLSCRKKDGKYAIVTD  205 (316)
Q Consensus       134 ~pl~vGGGIr-~----e~~~~~l~~Gad~--VVigt~~~~~~~~~~eli~ei~~~~-G~~~IvvslD~k~~~g~~~v~~~  205 (316)
                      +|+..-.|+. .    ++++++.+.|...  +=+|....+.   +.+.++.+.+.+ | ..+-+.+|+.   +       
T Consensus       140 v~~y~s~~~~~~~~~~~~a~~~~~~G~~~~KiKvg~~~~~~---di~~v~~vr~a~~g-~~~~l~vDaN---~-------  205 (376)
T 4h2h_A          140 VSSYYSLGVMEPDEAARQALEKQREGYSRLQVKLGARPIEI---DIEAIRKVWEAVRG-TGIALAADGN---R-------  205 (376)
T ss_dssp             EECEEEECSCCHHHHHHHHHHHHHHTCSEEEEECCSSCHHH---HHHHHHHHHHHHTT-SCCEEEEECT---T-------
T ss_pred             eeEeeecccCCHHHHHHHHHHHHhcCceEEEEecCCCCHHH---HHHHHHHHHhhccC-CeeEEEEeec---c-------
Confidence            3444444553 3    3466777789875  4455543221   378888888888 5 4577888973   2       


Q ss_pred             CcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCC-CCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCE
Q 021156          206 RWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLG-IDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVD  284 (316)
Q Consensus       206 gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G-~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~g  284 (316)
                      +|...   +...+++.+.+.+   +.+   .     +. .+++-++.+++.+++|+.+.=.+.+..|+.++.+.+ .++.
T Consensus       206 ~~~~~---~A~~~~~~l~~~~---~~i---E-----eP~~~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~-~~d~  270 (376)
T 4h2h_A          206 GWTTR---DALRFSRECPDIP---FVM---E-----QPCNSFEDLEAIRPLCHHALYMDEDGTSLNTVITAAATS-LVDG  270 (376)
T ss_dssp             CCCHH---HHHHHHHHCTTSC---EEE---E-----SCSSSHHHHHHHGGGCCSCEEESTTCCSHHHHHHHHHTT-CCSE
T ss_pred             CCCHH---HHHHHHHHHhhcc---ccc---c-----CCcchhhhHhhhhhcccCccccCcccCCHHHHHHHHHhh-ccCc
Confidence            45421   2445555554443   221   1     11 267888999999999988877789999999999988 3555


Q ss_pred             EEEccchhhccCcccHHHHHHHHHhh
Q 021156          285 VTVGSALDIFGGNLAYKDVVAWHAQQ  310 (316)
Q Consensus       285 VivG~Al~~~~g~~~~~~~~~~~~~~  310 (316)
                      +.+--+-  .+|-....++.++++++
T Consensus       271 v~~d~~~--~GGit~~~~ia~~a~~~  294 (376)
T 4h2h_A          271 FGMKVSR--IGGLQHMRAFRDFCAAR  294 (376)
T ss_dssp             ECCBHHH--HTSHHHHHHHHHHHHHH
T ss_pred             cccccce--eCCcHHHHHHHHHHHHc
Confidence            5544333  44433445555555543

>3ekg_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, nysgrc, L-rhamnonate dehydratase,target PSI-2; HET: TLA; 1.60A {Azotobacter vinelandii avop} PDB: 2oz3_A*

Probab=87.17  E-value=2.3  Score=40.61  Aligned_cols=115  Identities=16%  Similarity=0.038  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHH
Q 021156          172 LERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVAL  251 (316)
Q Consensus       172 ~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~  251 (316)
                      .+.++.+.+.+|+ .+-+.+|+.          .+|...   +..++++.+.+.++..+  =.     =...-|++.+++
T Consensus       197 i~~v~avRea~G~-~~~L~vDaN----------~~w~~~---~A~~~~~~Le~~~l~~i--Ee-----P~~~~d~~~~a~  255 (404)
T 3ekg_A          197 LEELATMRERVGP-DFWLMFDCW----------MSLDLN---YATRLARGAREYGLKWI--EE-----ALPPDDYWGYAE  255 (404)
T ss_dssp             HHHHHHHHHHHCS-SSEEEEECT----------TCCCHH---HHHHHHHHHGGGTCCEE--EC-----CSCTTCHHHHHH
T ss_pred             HHHHHHHHHHhCC-CCeEEecCC----------CCCCHH---HHHHHHHHHhhcCCcEE--ec-----CCCcccHHHHHH
Confidence            7889999999985 456888873          356432   35678888888876643  11     112238899999


Q ss_pred             HhhcCCCcE-EEEe-CCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHHhh
Q 021156          252 LGKYSPIPV-TYAG-GVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQQ  310 (316)
Q Consensus       252 l~~~~~iPV-IasG-GI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~~~  310 (316)
                      +++.+++|+ |+.| -+.+..++.++++.+ .++.+.+--+-  .+|-....++.++++++
T Consensus       256 l~~~~~~pi~Ia~gE~~~~~~~~~~li~~~-a~dii~~d~~~--~GGitea~kia~lA~a~  313 (404)
T 3ekg_A          256 LRRNAPTGMMVTTGEHEATRWGFRMLLEMG-CCDIIQPDVGW--CGGVTELLKISALADAH  313 (404)
T ss_dssp             HHHHSCTTCEEEECTTCCHHHHHHHHHHTT-CCSEECCCTTT--TTHHHHHHHHHHHHHHT
T ss_pred             HHHhcCCCeEEEecCccCCHHHHHHHHHcC-CCCeEecChhh--cCCccHHHHHHHHHHHc
Confidence            999888885 4444 267889999999988 25544443333  33433344455555554

>3th6_A Triosephosphate isomerase; alpha/beta barrel, embryogenesis, glycolysis; 2.40A {Rhipicephalus microplus}

Probab=86.96  E-value=2.9  Score=37.43  Aligned_cols=139  Identities=11%  Similarity=0.064  Sum_probs=75.3

Q ss_pred             HHHHHHHcCCCEEEeCCeeecC--CCCCHHHHHHHHHHh--cCceEEEeeeeeecCCeeEEEeCCcceecccCHHHH---
Q 021156          146 NSLSYIEEGATHVIVTSYVFNN--GQMDLERLKDLVRVV--GKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDER---  218 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~~~~~--~~~~~eli~ei~~~~--G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~---  218 (316)
                      ....+.++||+.|+||=.-++.  ++.|...-+++....  | =..++++.=...           ....+ ...+.   
T Consensus        79 S~~mL~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~G-L~pI~CvGEtle-----------ere~g-~t~~vv~~  145 (249)
T 3th6_A           79 SPGMIKDCGGQWVILGHSERRHVFKEDDVLIGEKIKHALESG-LNVIACIGELLE-----------DREAG-RTEEVCFR  145 (249)
T ss_dssp             CHHHHHHTTCCEEEESCHHHHHTSCCCHHHHHHHHHHHHHTT-CEEEEEECCCHH-----------HHTTT-CHHHHHHH
T ss_pred             CHHHHHHcCCCEEEECchhhccccCCCHHHHHHHHHHHHHCC-CEEEEEcCCcHH-----------HHhcC-CHHHHHHH
Confidence            3778889999999999654432  333233333333333  2 245666652100           00011 11122   


Q ss_pred             -HHHHHHcCC---C--EEEEeecCCccccCCCCHHHHHH----Hhh----cC------CCcEEEEeCCCCHHHHHHHHHh
Q 021156          219 -VLDFLASYA---D--EFLVHGVDVEGKKLGIDDELVAL----LGK----YS------PIPVTYAGGVTTMADLEKIKVA  278 (316)
Q Consensus       219 -a~~~~~~Ga---~--~ilvtdi~~dG~~~G~d~eli~~----l~~----~~------~iPVIasGGI~s~eDi~~l~~~  278 (316)
                       .+...+ ++   .  -|-|-.+..-||......+.+.+    +++    ..      +++|+++|+|..-+...-+...
T Consensus       146 Ql~~~l~-~~~~~~~~vIAYEPvWAIGTG~~At~e~aqevh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~  224 (249)
T 3th6_A          146 QIKHIAS-NVKDWSKVVIAYEPVWAIGTGKTATPDQAQEVHSKVRNWLSTNVSADVASKVRIQYGGSVNAGNCKELGRKP  224 (249)
T ss_dssp             HHHHHHT-TCSCGGGEEEEECCTTTCCC---CCHHHHHHHHHHHHHHHHHHTCHHHHHHCCEEECSCCCTTTHHHHHTST
T ss_pred             HHHHHHh-chhhhcCEEEEECCcchhcCCCCCCHHHHHHHHHHHHHHHHHhhChhhcccccEEEcCccCHhHHHHHhcCC
Confidence             112221 22   1  23478888999987776553332    222    11      3799999999986655555444


Q ss_pred             CCCcCEEEEccchhhccCcccHHHHH
Q 021156          279 GIGRVDVTVGSALDIFGGNLAYKDVV  304 (316)
Q Consensus       279 G~g~~gVivG~Al~~~~g~~~~~~~~  304 (316)
                      +  +||+.||.|-  +. + .|-++.
T Consensus       225 d--iDG~LVGgAS--L~-~-~F~~ii  244 (249)
T 3th6_A          225 D--IDGFLVGGAS--LK-P-EFVQII  244 (249)
T ss_dssp             T--CCEEEECGGG--GS-T-HHHHHH
T ss_pred             C--CCEEEeehHh--hh-H-HHHHHH
Confidence            4  9999999998  75 3 455543

>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}

Probab=86.93  E-value=4.8  Score=36.49  Aligned_cols=91  Identities=15%  Similarity=0.235  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHcCCCEEEEeecCCccccCCCC--HHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHH----hCCCcCEEE
Q 021156          215 LDERVLDFLASYADEFLVHGVDVEGKKLGID--DELVALLGKYS--PIPVTYAGGVTTMADLEKIKV----AGIGRVDVT  286 (316)
Q Consensus       215 ~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d--~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~----~G~g~~gVi  286 (316)
                      +...++.+.+.|++.+++..-+-++..-..+  .++++...+.+  ++|||++-|-.+.++..++.+    .|  +++++
T Consensus        26 l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~G--adavl  103 (294)
T 3b4u_A           26 MIAHARRCLSNGCDSVTLFGTTGEGCSVGSRERQAILSSFIAAGIAPSRIVTGVLVDSIEDAADQSAEALNAG--ARNIL  103 (294)
T ss_dssp             HHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHTTCCGGGEEEEECCSSHHHHHHHHHHHHHTT--CSEEE
T ss_pred             HHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHHHHHHhcC--CCEEE
Confidence            4567788889999999888766554443332  23555555554  589999988877777655543    45  99999


Q ss_pred             EccchhhccCcccHHHHHHHHHh
Q 021156          287 VGSALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       287 vG~Al~~~~g~~~~~~~~~~~~~  309 (316)
                      +-.-.  |....+-+++.++.++
T Consensus       104 v~~P~--y~~~~s~~~l~~~f~~  124 (294)
T 3b4u_A          104 LAPPS--YFKNVSDDGLFAWFSA  124 (294)
T ss_dssp             ECCCC--SSCSCCHHHHHHHHHH
T ss_pred             EcCCc--CCCCCCHHHHHHHHHH
Confidence            99988  7551477888877654

>2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A*

Probab=86.92  E-value=5.5  Score=36.41  Aligned_cols=151  Identities=19%  Similarity=0.167  Sum_probs=0.0

Q ss_pred             CCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCC--ccc------------HHHHHHHHHhCCCcEEEecCCCHH
Q 021156           80 DDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGAD--PLS------------KAAAIEALHAYPGGLQVGGGINSD  145 (316)
Q Consensus        80 y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~--~~~------------~~~i~~~v~~~~~pl~vGGGIr~e  145 (316)
                      |.|    ..|.+.+..++.|+.+.++|++   ++|+.+.  .+.            -..+++.+++.++|+.++- -+.+
T Consensus        43 sdg----g~~~~~~~a~~~a~~~v~~GAd---IIDIGgeSTrPga~~v~~~eE~~Rv~pvI~~l~~~~vpiSIDT-~~~~  114 (294)
T 2dqw_A           43 SDG----GRYLDPERALERAREMVAEGAD---ILDLGAESTRPGAAPVPVEEEKRRLLPVLEAVLSLGVPVSVDT-RKPE  114 (294)
T ss_dssp             --------------CCHHHHHHHHHHTCS---EEEEECC-----------CCHHHHHHHHHHHHHTTCSCEEEEC-SCHH
T ss_pred             CCC----CCCCCHHHHHHHHHHHHHCCCC---EEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEC-CCHH


Q ss_pred             HHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeee--------------------eeecCCeeEEEeC
Q 021156          146 NSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLS--------------------CRKKDGKYAIVTD  205 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD--------------------~k~~~g~~~v~~~  205 (316)
                      -++..+++|++  +|++..-.+    .+.+.+++++||..-|+...+                    ..           
T Consensus       115 Va~aAl~aGa~--iINdVsg~~----d~~m~~v~a~~~~~vVlmh~~eG~p~tm~~~~~y~dv~~ev~~-----------  177 (294)
T 2dqw_A          115 VAEEALKLGAH--LLNDVTGLR----DERMVALAARHGVAAVVMHMPVPDPATMMAHARYRDVVAEVKA-----------  177 (294)
T ss_dssp             HHHHHHHHTCS--EEECSSCSC----CHHHHHHHHHHTCEEEEECCSSSCTTTGGGGCCCSSHHHHHHH-----------
T ss_pred             HHHHHHHhCCC--EEEECCCCC----ChHHHHHHHHhCCCEEEEcCCCCCCccccccCccccHHHHHHH-----------


Q ss_pred             CcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhc--CCCcEEEE
Q 021156          206 RWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKY--SPIPVTYA  263 (316)
Q Consensus       206 gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~--~~iPVIas  263 (316)
                              .+.+.++.+.+.|+..|++=.--.=|....-|+++++++.+.  .+.|+.++
T Consensus       178 --------~l~~~i~~a~~~Gi~~IilDPG~Gf~kt~~~n~~ll~~l~~~~~~g~Pvl~G  229 (294)
T 2dqw_A          178 --------FLEAQARRALSAGVPQVVLDPGFGFGKLLEHNLALLRRLDEIVALGHPVLVG  229 (294)
T ss_dssp             --------HHHHHHHHHHHTTCSCEEEECCTTSSCCHHHHHHHHHTHHHHHTTSSCBEEC
T ss_pred             --------HHHHHHHHHHHCCCCcEEEcCCCCcccCHHHHHHHHHHHHHHhcCCCCEEEE

>1m6j_A TIM, TPI, triosephosphate isomerase; asymmetry, monomer stability; 1.50A {Entamoeba histolytica} SCOP: c.1.1.1

Probab=86.74  E-value=8.4  Score=34.57  Aligned_cols=135  Identities=10%  Similarity=0.038  Sum_probs=73.6

Q ss_pred             HHHHHHHcCCCEEEeCCeeecC--CCCCHHHHHHHHHHh--cCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHH
Q 021156          146 NSLSYIEEGATHVIVTSYVFNN--GQMDLERLKDLVRVV--GKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLD  221 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~~~~~--~~~~~eli~ei~~~~--G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~  221 (316)
                      ....+.++||+.|+||=.-++.  ++.|...-+++....  | =..++++.=..     .-+-.|-..  . -+....+.
T Consensus        86 S~~mL~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~G-L~pI~CvGEtl-----eere~g~t~--~-vv~~Ql~~  156 (261)
T 1m6j_A           86 HVGMLVDCQVPYVILGHSERRQIFHESNEQVAEKVKVAIDAG-LKVIACIGETE-----AQRIANQTE--E-VVAAQLKA  156 (261)
T ss_dssp             BHHHHHHTTCCEEEESCHHHHHHSCCCHHHHHHHHHHHHHHT-CEEEEEECCCH-----HHHHTTCHH--H-HHHHHHHH
T ss_pred             CHHHHHHcCCCEEEECchhhhcccCCCHHHHHHHHHHHHHCC-CEEEEEcCCcH-----HHHhCCCHH--H-HHHHHHHH
Confidence            3778889999999999765432  343333333333332  3 34566664210     000011100  0 01111111


Q ss_pred             -HHHcCC----CE-EEEeecCCccccCCCCHHHHHHH----h----hc------CCCcEEEEeCCCCHHHHHHHHHhCCC
Q 021156          222 -FLASYA----DE-FLVHGVDVEGKKLGIDDELVALL----G----KY------SPIPVTYAGGVTTMADLEKIKVAGIG  281 (316)
Q Consensus       222 -~~~~Ga----~~-ilvtdi~~dG~~~G~d~eli~~l----~----~~------~~iPVIasGGI~s~eDi~~l~~~G~g  281 (316)
                       +.....    .- |-|-.+..-||..-.+.+.+.++    +    +.      -.++|+++|+|..-+... ++... +
T Consensus       157 ~l~~~~~~~~~~~vIAYEPvWAIGTG~~Atpe~a~evh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~N~~~-l~~~~-d  234 (261)
T 1m6j_A          157 INNAISKEAWKNIILAYEPVWAIGTGKTATPDQAQEVHQYIRKWMTENISKEVAEATRIQYGGSVNPANCNE-LAKKA-D  234 (261)
T ss_dssp             HHHHSCTGGGGGEEEEECCGGGSSSSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHSCEEECSCCCTTTHHH-HHTST-T
T ss_pred             HHhcCCHHHcCCEEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhChhhcccccEEEcCCcCHhhHHH-HhcCC-C
Confidence             222222    22 33788889999877766644432    2    11      147999999998865544 44443 4


Q ss_pred             cCEEEEccch
Q 021156          282 RVDVTVGSAL  291 (316)
Q Consensus       282 ~~gVivG~Al  291 (316)
                      +||+.||+|.
T Consensus       235 iDG~LVGgAs  244 (261)
T 1m6j_A          235 IDGFLVGGAS  244 (261)
T ss_dssp             CCEEEESGGG
T ss_pred             CCeeEecHHH
Confidence            9999999999

>2i9e_A Triosephosphate isomerase; 2.00A {Tenebrio molitor}

Probab=86.70  E-value=1.7  Score=39.21  Aligned_cols=137  Identities=14%  Similarity=0.061  Sum_probs=74.9

Q ss_pred             HHHHHHHcCCCEEEeCCeeecC--CCCCHHHHHHHHHHh--cCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHH
Q 021156          146 NSLSYIEEGATHVIVTSYVFNN--GQMDLERLKDLVRVV--GKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLD  221 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~~~~~--~~~~~eli~ei~~~~--G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~  221 (316)
                      ....+.++||+.|+||=.-++.  ++.|...-+++....  | =..++++.-...     -+-.|-..  . -+...++.
T Consensus        78 S~~mL~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~G-L~pIvCvGEtle-----ere~g~t~--~-vv~~Ql~~  148 (259)
T 2i9e_A           78 SPAMIKDVGADWVILGHSERRQIFGESDELIAEKVCHALESG-LKVIACIGETLE-----EREAGKTE--E-VVFRQTKA  148 (259)
T ss_dssp             CHHHHHHTTCCEEEESCHHHHHTSCCCHHHHHHHHHHHHHTT-CEEEEEECCCHH-----HHHTTCHH--H-HHHHHHHH
T ss_pred             CHHHHHHcCCCEEEECchhhhhhcCCCHHHHHHHHHHHHHCC-CeEEEEcCCcHH-----HHhcCCHH--H-HHHHHHHH
Confidence            3778889999999999764432  332233333433333  2 245666642100     00011000  0 01111222


Q ss_pred             HH-Hc-CC-CE-EEEeecCCccccCCCCHHHHHHHhhc--------------CCCcEEEEeCCCCHHHHHHHHHhCCCcC
Q 021156          222 FL-AS-YA-DE-FLVHGVDVEGKKLGIDDELVALLGKY--------------SPIPVTYAGGVTTMADLEKIKVAGIGRV  283 (316)
Q Consensus       222 ~~-~~-Ga-~~-ilvtdi~~dG~~~G~d~eli~~l~~~--------------~~iPVIasGGI~s~eDi~~l~~~G~g~~  283 (316)
                      .. .. .. .- |-|-.+..-||..-.+.+.+.++.+.              -.++|+++|+|..-+...-+...+  +|
T Consensus       149 ~l~~~~~~~~~vIAYEPvWAIGTG~~Atpe~aqevh~~IR~~l~~~~~~~va~~vrIlYGGSV~~~N~~~l~~~~d--iD  226 (259)
T 2i9e_A          149 IAAKVNDWSNVVIAYEPVWAIGTGKTATPQQAQDVHKALRQWICENIDAKVGNSIRIQYGGSVTAANCKELASQPD--ID  226 (259)
T ss_dssp             HHHHCSCCTTEEEEECCGGGTTSSSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHCEEEECSCCCTTTHHHHHTSTT--CC
T ss_pred             HHhcchhhcCEEEEEcCHHHcCCCCCCCHHHHHHHHHHHHHHHHHhcChhhcccccEEEcCCCCHhhHHHHhcCCC--CC
Confidence            22 11 12 22 34788889999887776654433211              147999999999866555444444  99


Q ss_pred             EEEEccchhhcc
Q 021156          284 DVTVGSALDIFG  295 (316)
Q Consensus       284 gVivG~Al~~~~  295 (316)
                      |+.||.|.  +.
T Consensus       227 G~LVGgAs--L~  236 (259)
T 2i9e_A          227 GFLVGGAS--LK  236 (259)
T ss_dssp             EEEESGGG--GS
T ss_pred             eeeechHh--hC
Confidence            99999999  64

>3tjl_A NADPH dehydrogenase; OLD yellow enzyme, flavin mononucleotide, TIM barrel, NADPH oxidoreductase, enone reductase; HET: FMN; 1.50A {Scheffersomyces stipitis cbs 6054} PDB: 3upw_A* 4df2_A*

Probab=86.59  E-value=0.18  Score=48.56  Aligned_cols=83  Identities=13%  Similarity=0.123  Sum_probs=56.7

Q ss_pred             HHHHHHH---HHcC--CCcceEEEec--CC---ccc-HHHHHHHHH-hCCCcEEEecCCCH-HHHHHHHHc----CCCEE
Q 021156           96 AEFANLY---KEDG--LTGGHAIMLG--AD---PLS-KAAAIEALH-AYPGGLQVGGGINS-DNSLSYIEE----GATHV  158 (316)
Q Consensus        96 ~e~a~~~---~~~G--~~~l~lvDLd--a~---~~~-~~~i~~~v~-~~~~pl~vGGGIr~-e~~~~~l~~----Gad~V  158 (316)
                      .++++.+   ++.|  ++.+|+..=.  ..   ... .....+.++ ...+|++.-|||+. +++.+.++.    +||.|
T Consensus       264 ~~l~~~L~~~~~~G~~l~ylhv~~~~~~~~~~~~~~~~~~~~~~ir~~~~~PvI~~Ggi~~~~dA~~~i~~~~~g~aDlV  343 (407)
T 3tjl_A          264 SYLVHELQQRADKGQGIAYISVVEPRVSGNVDVSEEDQAGDNEFVSKIWKGVILKAGNYSYDAPEFKTLKEDIADKRTLV  343 (407)
T ss_dssp             HHHHHHHHHHHHTTCCCSEEEEECTTEETTEECCGGGCCCCSHHHHHHCCSEEEEESCGGGGTTTTHHHHHHHTTSSEEE
T ss_pred             HHHHHHHHhHhhcCCceeEEEEEccccCCCCcCCccchhHHHHHHHHHhCCCEEecCCCCCHHHHHHHHHhhccCCCeEE
Confidence            5688888   7778  8888887421  11   000 001122333 46789999999985 545555554    59999


Q ss_pred             EeCCeeecCCCCCHHHHHHHHHHh
Q 021156          159 IVTSYVFNNGQMDLERLKDLVRVV  182 (316)
Q Consensus       159 Vigt~~~~~~~~~~eli~ei~~~~  182 (316)
                      .+|..++.|    |+++.++.+..
T Consensus       344 a~GR~~iaN----PdL~~ri~~g~  363 (407)
T 3tjl_A          344 GFSRYFTSN----PNLVWKLRDGI  363 (407)
T ss_dssp             ECSHHHHHC----TTHHHHHHHTC
T ss_pred             EeChhhhhC----chHHHHHHcCC
Confidence            999999998    99999997643

>2jgq_A Triosephosphate isomerase; glycolysis, pentose shunt, gluconeogenesis, lipid synthesis, fatty acid biosynthesis; HET: QGA; 2.3A {Helicobacter pylori}

Probab=86.55  E-value=2.1  Score=37.87  Aligned_cols=132  Identities=14%  Similarity=0.037  Sum_probs=74.1

Q ss_pred             HHHHHHHcCCCEEEeCCeeecC--CCCCHHHHHHHHHHh--cCceEEEeeeeeecCCeeEEEeCCcceeccc-CHHH-HH
Q 021156          146 NSLSYIEEGATHVIVTSYVFNN--GQMDLERLKDLVRVV--GKQRLVLDLSCRKKDGKYAIVTDRWQKFSDV-YLDE-RV  219 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~~~~~--~~~~~eli~ei~~~~--G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~-~~~e-~a  219 (316)
                      ....+.++||+.|+||=.-++.  ++.|...-+++....  | =..++++.-.. .          ....+. ...+ ..
T Consensus        73 S~~mL~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~G-L~pI~CvGEtl-e----------ere~g~~~t~~vv~  140 (233)
T 2jgq_A           73 TSKHLEELKIHTLLIGHSERRTLLKESPSFLKEKFDFFKSKN-FKIVYCIGEEL-T----------TREKGFKAVKEFLS  140 (233)
T ss_dssp             BHHHHHHTTCCEEEECCHHHHHTTCCCHHHHHHHHHHHHHTT-CEEEEEECCCH-H----------HHHHCHHHHHHHHH
T ss_pred             CHHHHHHcCCCEEEeCchhhhcccCCCHHHHHHHHHHHHHCC-CEEEEEcCCcH-H----------HHhcCchhHHHHHH
Confidence            3778889999999999765433  343333333333332  2 24556664210 0          000110 1112 22


Q ss_pred             HHHHHcCC---CE-EEEeecCCccccCCCCHHHHHH----HhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEcc
Q 021156          220 LDFLASYA---DE-FLVHGVDVEGKKLGIDDELVAL----LGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGS  289 (316)
Q Consensus       220 ~~~~~~Ga---~~-ilvtdi~~dG~~~G~d~eli~~----l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~  289 (316)
                      .++.....   .- |-|-.+..-||..-.+.+.+++    +++..  .++|+++|+|..-+...-+...+  +||+.||+
T Consensus       141 ~Ql~~l~~~~~~~vIAYEPvWAIGTG~~At~e~a~ev~~~IR~~l~~~vrIlYGGSV~~~N~~~l~~~~d--iDG~LVGg  218 (233)
T 2jgq_A          141 EQLENIDLNYPNLVVAYEPIWAIGTKKSASLEDIYLTHGFLKQILNQKTPLLYGGSVNTQNAKEILGIDS--VDGLLIGS  218 (233)
T ss_dssp             HHHTTSCTTCTTEEEEECCGGGTTC--CCCHHHHHHHHHHHHHHSCTTSCEEEESSCCTTTHHHHHTSTT--CCEEEESG
T ss_pred             HHHHhhhhhccceEEEEeCHHHhCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEcCCcChhhHHHHhcCCC--CCeeEecH
Confidence            23332221   22 3467788889987777665444    34433  58999999999866555554444  99999999


Q ss_pred             ch
Q 021156          290 AL  291 (316)
Q Consensus       290 Al  291 (316)
                      |.
T Consensus       219 As  220 (233)
T 2jgq_A          219 AS  220 (233)
T ss_dssp             GG
T ss_pred             HH
Confidence            98

>3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A

Probab=86.47  E-value=0.76  Score=42.95  Aligned_cols=79  Identities=19%  Similarity=0.224  Sum_probs=49.1

Q ss_pred             HHHHHHHH--HHcCCCEEEEeecCCc-----cccCC---CCH----HHHHHHhhcCCCcEE-EEeCCCCHHHHHHHH---
Q 021156          215 LDERVLDF--LASYADEFLVHGVDVE-----GKKLG---IDD----ELVALLGKYSPIPVT-YAGGVTTMADLEKIK---  276 (316)
Q Consensus       215 ~~e~a~~~--~~~Ga~~ilvtdi~~d-----G~~~G---~d~----eli~~l~~~~~iPVI-asGGI~s~eDi~~l~---  276 (316)
                      +...++.+  .+.|+|-+= +...-+     |...|   ++.    +.++++.+.+++|++ .|||+. .+++.+.+   
T Consensus       190 V~~a~R~~~~~elGaDv~K-ve~p~~~~~v~g~~~~~~~y~~~ea~~~f~~~~~a~~~P~v~lsgG~~-~~~fl~~v~~A  267 (332)
T 3iv3_A          190 VNDAMKVFSAERFGIDVLK-VEVPVNMVYVEGFAEGEVVYSKEEAAQAFREQEASTDLPYIYLSAGVS-AELFQETLVFA  267 (332)
T ss_dssp             HHHHHHHHTSGGGCCSEEE-ECCSSCGGGBTTTCSSCCCBCHHHHHHHHHHHHHTCSSCEEEECTTCC-HHHHHHHHHHH
T ss_pred             HHHHHHHHhhcCcCCcEEE-EecCCChhhhcccccccccccHHHHHHHHHHHHhcCCCCEEEECCCCC-HHHHHHHHHHH
Confidence            44556777  577999653 332221     32222   222    246667778899976 699984 55554444   


Q ss_pred             -HhCCCc--CEEEEccchhhccCccc
Q 021156          277 -VAGIGR--VDVTVGSALDIFGGNLA  299 (316)
Q Consensus       277 -~~G~g~--~gVivG~Al~~~~g~~~  299 (316)
                       +.|  +  .||.+||++  +...+.
T Consensus       268 ~~aG--a~f~Gv~~GRnv--wq~~v~  289 (332)
T 3iv3_A          268 HKAG--AKFNGVLCGRAT--WAGSVQ  289 (332)
T ss_dssp             HHHT--CCCCEEEECHHH--HTTHHH
T ss_pred             HHcC--CCcceEEeeHHH--HHhhhh
Confidence             456  6  999999999  776543

>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}

Probab=86.37  E-value=1.6  Score=38.44  Aligned_cols=86  Identities=10%  Similarity=0.080  Sum_probs=61.8

Q ss_pred             HHHHHHHcCCCEE-EEeecCCccccCCCCHHHHHHHh---hcCCCcEEEE----eCC--CCH-------HHHHHHHHhCC
Q 021156          218 RVLDFLASYADEF-LVHGVDVEGKKLGIDDELVALLG---KYSPIPVTYA----GGV--TTM-------ADLEKIKVAGI  280 (316)
Q Consensus       218 ~a~~~~~~Ga~~i-lvtdi~~dG~~~G~d~eli~~l~---~~~~iPVIas----GGI--~s~-------eDi~~l~~~G~  280 (316)
                      -+..+++.|+++| ++.+....|+  -|.+.+++.++   +.+++||.+-    ||=  -|.       +|+..++++| 
T Consensus        13 ~a~~A~~~GAdRIELc~~L~~GGl--TPS~g~i~~~~~~~~~~~ipV~vMIRPR~GdF~Ys~~E~~~M~~Di~~~~~~G-   89 (224)
T 2bdq_A           13 DLTRLDKAIISRVELCDNLAVGGT--TPSYGVIKEANQYLHEKGISVAVMIRPRGGNFVYNDLELRIMEEDILRAVELE-   89 (224)
T ss_dssp             TGGGCCTTTCCEEEEEBCGGGTCB--CCCHHHHHHHHHHHHHTTCEEEEECCSSSSCSCCCHHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHcCCCEEEEcCCcccCCc--CCCHHHHHHHHHhhhhcCCceEEEECCCCCCCcCCHHHHHHHHHHHHHHHHcC-
Confidence            4556678899998 5566655443  47888898887   8889998763    332  232       3777788888 


Q ss_pred             CcCEEEEccchhhccCcccHHHHHHHHHh
Q 021156          281 GRVDVTVGSALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       281 g~~gVivG~Al~~~~g~~~~~~~~~~~~~  309 (316)
                       ++|+++|---  =.|.++.+.+.++...
T Consensus        90 -adGvV~G~Lt--~dg~iD~~~~~~Li~~  115 (224)
T 2bdq_A           90 -SDALVLGILT--SNNHIDTEAIEQLLPA  115 (224)
T ss_dssp             -CSEEEECCBC--TTSSBCHHHHHHHHHH
T ss_pred             -CCEEEEeeEC--CCCCcCHHHHHHHHHH
Confidence             9999999766  6788888777776544

>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A

Probab=86.13  E-value=2.7  Score=37.65  Aligned_cols=78  Identities=19%  Similarity=0.179  Sum_probs=51.7

Q ss_pred             HHHHHHcCCCcceEEEecCCcccHHHHHHHHHhCCC-cEEEecCCC--H-HHHHHHH----HcCCCEEEeCCeeecCCCC
Q 021156           99 ANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAYPG-GLQVGGGIN--S-DNSLSYI----EEGATHVIVTSYVFNNGQM  170 (316)
Q Consensus        99 a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~~~-pl~vGGGIr--~-e~~~~~l----~~Gad~VVigt~~~~~~~~  170 (316)
                      ++...+.|++.+..=.    ....+.+.+.++.++. |+..-|||+  + +++.+.+    ++||+.+.+|...++.+  
T Consensus       165 ~~~a~~~GAD~vkt~~----~~~~e~~~~~~~~~~~~pV~asGGi~~~~~~~~l~~i~~~~~aGA~GvsvgraI~~~~--  238 (263)
T 1w8s_A          165 ARIALELGADAMKIKY----TGDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRR--  238 (263)
T ss_dssp             HHHHHHHTCSEEEEEC----CSSHHHHHHHHHHTTTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESHHHHTST--
T ss_pred             HHHHHHcCCCEEEEcC----CCCHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEehhhcCCc--
Confidence            4556667888666552    1234455555555677 999999998  4 5555444    89999999999998762  


Q ss_pred             CH-HHHHHHHHHh
Q 021156          171 DL-ERLKDLVRVV  182 (316)
Q Consensus       171 ~~-eli~ei~~~~  182 (316)
                      || ..++++.+.+
T Consensus       239 dp~~~~~~l~~~v  251 (263)
T 1w8s_A          239 DALKFARALAELV  251 (263)
T ss_dssp             THHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            23 3445554444

>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}

Probab=86.04  E-value=4.2  Score=36.91  Aligned_cols=90  Identities=14%  Similarity=0.168  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHcCCCEEEEeecCCccccCCCC--HHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHH----hCCCcCEEE
Q 021156          215 LDERVLDFLASYADEFLVHGVDVEGKKLGID--DELVALLGKYS--PIPVTYAGGVTTMADLEKIKV----AGIGRVDVT  286 (316)
Q Consensus       215 ~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d--~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~----~G~g~~gVi  286 (316)
                      +...++.+.+.|++.+++..-+-++..-..+  .++++...+.+  ++|||++-|-.+.++..++.+    .|  +++++
T Consensus        23 l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~G--adavl  100 (294)
T 2ehh_A           23 LGNLIEFHVDNGTDAILVCGTTGESPTLTFEEHEKVIEFAVKRAAGRIKVIAGTGGNATHEAVHLTAHAKEVG--ADGAL  100 (294)
T ss_dssp             HHHHHHHHHTTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHTT--CSEEE
T ss_pred             HHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcC--CCEEE
Confidence            4567788889999999887766555433332  23555555433  589999988877776655443    45  99999


Q ss_pred             EccchhhccCcccHHHHHHHHHh
Q 021156          287 VGSALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       287 vG~Al~~~~g~~~~~~~~~~~~~  309 (316)
                      +-.-.  |.. .+-+++.++.++
T Consensus       101 v~~P~--y~~-~s~~~l~~~f~~  120 (294)
T 2ehh_A          101 VVVPY--YNK-PTQRGLYEHFKT  120 (294)
T ss_dssp             EECCC--SSC-CCHHHHHHHHHH
T ss_pred             ECCCC--CCC-CCHHHHHHHHHH
Confidence            99988  754 478888877654

>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A

Probab=85.86  E-value=4.4  Score=36.76  Aligned_cols=90  Identities=16%  Similarity=0.223  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHcCCCEEEEeecCCccccCCCC--HHHHHHHhhc--CCCcEEEEeCCCCHHHHHHHH----HhCCCcCEEE
Q 021156          215 LDERVLDFLASYADEFLVHGVDVEGKKLGID--DELVALLGKY--SPIPVTYAGGVTTMADLEKIK----VAGIGRVDVT  286 (316)
Q Consensus       215 ~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d--~eli~~l~~~--~~iPVIasGGI~s~eDi~~l~----~~G~g~~gVi  286 (316)
                      +...++.+.+.|++.+++..-+-++..-..+  .++++.+.+.  -++|||++-|-.+.++..++.    +.|  +++++
T Consensus        25 l~~lv~~li~~Gv~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~G--adavl  102 (292)
T 3daq_A           25 LKAHVNFLLENNAQAIIVNGTTAESPTLTTDEKELILKTVIDLVDKRVPVIAGTGTNDTEKSIQASIQAKALG--ADAIM  102 (292)
T ss_dssp             HHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHT--CSEEE
T ss_pred             HHHHHHHHHHcCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHHcC--CCEEE
Confidence            4566788889999999888766554443332  2355555554  368999998877777766544    345  99999


Q ss_pred             EccchhhccCcccHHHHHHHHHh
Q 021156          287 VGSALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       287 vG~Al~~~~g~~~~~~~~~~~~~  309 (316)
                      +-.-.  |.. .+-+++.++.++
T Consensus       103 v~~P~--y~~-~~~~~l~~~f~~  122 (292)
T 3daq_A          103 LITPY--YNK-TNQRGLVKHFEA  122 (292)
T ss_dssp             EECCC--SSC-CCHHHHHHHHHH
T ss_pred             ECCCC--CCC-CCHHHHHHHHHH
Confidence            99888  754 477888887654

>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}

Probab=85.84  E-value=4.6  Score=36.50  Aligned_cols=90  Identities=10%  Similarity=0.130  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHcCCCEEEEeecCCccccCCCC--HHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHH----HhCCCcCEEE
Q 021156          215 LDERVLDFLASYADEFLVHGVDVEGKKLGID--DELVALLGKYS--PIPVTYAGGVTTMADLEKIK----VAGIGRVDVT  286 (316)
Q Consensus       215 ~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d--~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~----~~G~g~~gVi  286 (316)
                      +...++.+.+.|++.+++..-+-++..-..+  .++++...+.+  ++|||++-|-.+.++..++.    +.|  +++++
T Consensus        23 l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~G--adavl  100 (289)
T 2yxg_A           23 LEENINFLIENGVSGIVAVGTTGESPTLSHEEHKKVIEKVVDVVNGRVQVIAGAGSNCTEEAIELSVFAEDVG--ADAVL  100 (289)
T ss_dssp             HHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSSHHHHHHHHHHHHHHT--CSEEE
T ss_pred             HHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcC--CCEEE
Confidence            4567788889999999887766554433332  23455555433  58999998887766665544    345  99999


Q ss_pred             EccchhhccCcccHHHHHHHHHh
Q 021156          287 VGSALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       287 vG~Al~~~~g~~~~~~~~~~~~~  309 (316)
                      +-.-.  |.. .+-+++.++.++
T Consensus       101 v~~P~--y~~-~s~~~l~~~f~~  120 (289)
T 2yxg_A          101 SITPY--YNK-PTQEGLRKHFGK  120 (289)
T ss_dssp             EECCC--SSC-CCHHHHHHHHHH
T ss_pred             ECCCC--CCC-CCHHHHHHHHHH
Confidence            99988  754 477888877654

>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*

Probab=85.82  E-value=4.8  Score=36.70  Aligned_cols=90  Identities=12%  Similarity=0.091  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHcCCCEEEEeecCCccccCCCC--HHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHH----HhCCCcCEEE
Q 021156          215 LDERVLDFLASYADEFLVHGVDVEGKKLGID--DELVALLGKYS--PIPVTYAGGVTTMADLEKIK----VAGIGRVDVT  286 (316)
Q Consensus       215 ~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d--~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~----~~G~g~~gVi  286 (316)
                      +...++.+.+.|++.+++..-+-++..-..+  .++++...+.+  ++|||++-|-.+.++..++.    +.|  +++++
T Consensus        35 l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~G--adavl  112 (301)
T 1xky_A           35 TTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVG--VDAVM  112 (301)
T ss_dssp             HHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHTT--CSEEE
T ss_pred             HHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCceEEeCCCCCCHHHHHHHHHHHHhcC--CCEEE
Confidence            4466788889999999887766554433332  23455555443  58999998887776665544    345  99999


Q ss_pred             EccchhhccCcccHHHHHHHHHh
Q 021156          287 VGSALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       287 vG~Al~~~~g~~~~~~~~~~~~~  309 (316)
                      +-.-.  |.. .+-+++.++.++
T Consensus       113 v~~P~--y~~-~s~~~l~~~f~~  132 (301)
T 1xky_A          113 LVAPY--YNK-PSQEGMYQHFKA  132 (301)
T ss_dssp             EECCC--SSC-CCHHHHHHHHHH
T ss_pred             EcCCC--CCC-CCHHHHHHHHHH
Confidence            99988  854 477888887654

>3ve9_A Orotidine-5'-phosphate decarboxylase; TIM barrel fold, orotidine 5'-monopho decarboxylase, lyase; 1.45A {Metallosphaera sedula} PDB: 3ve7_A

Probab=85.76  E-value=2.1  Score=37.36  Aligned_cols=70  Identities=13%  Similarity=0.034  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCH-HHHHHHHHhCCCcCEEEEccchhh
Q 021156          215 LDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTM-ADLEKIKVAGIGRVDVTVGSALDI  293 (316)
Q Consensus       215 ~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~-eDi~~l~~~G~g~~gVivG~Al~~  293 (316)
                      ....++...+.|++.+++         ++...+.++.+++.++-.+++.+||+.. .+..++.+.|  ++-+++||++  
T Consensus       117 v~~~a~~a~~~G~~GvV~---------sat~~~e~~~ir~~~~~f~~v~pGI~~~g~~~~~a~~~G--ad~iVvGr~I--  183 (215)
T 3ve9_A          117 YPYLREVARRVNPKGFVA---------PATRPSMISRVKGDFPDKLVISPGVGTQGAKPGIALCHG--ADYEIVGRSV--  183 (215)
T ss_dssp             HHHHHHHHHHHCCSEEEC---------CTTSHHHHHHHHHHCTTSEEEECCTTSTTCCTTHHHHTT--CSEEEECHHH--
T ss_pred             HHHHHHHHHHcCCCceee---------CCCCHHHHHHHHHhCCCcEEEcCCCCcCcCCHHHHHHcC--CCEEEeCHHH--
Confidence            567888888889876653         1223455666766543378899999853 2677888888  8899999999  


Q ss_pred             ccCc
Q 021156          294 FGGN  297 (316)
Q Consensus       294 ~~g~  297 (316)
                      |...
T Consensus       184 ~~a~  187 (215)
T 3ve9_A          184 YQSA  187 (215)
T ss_dssp             HTSS
T ss_pred             cCCC
Confidence            7543

>3u9i_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, PSI-biology; 2.90A {Roseiflexus SP}

Probab=85.65  E-value=3.5  Score=39.08  Aligned_cols=136  Identities=15%  Similarity=0.090  Sum_probs=83.9

Q ss_pred             HHHHHHHHcCCCE--EEeCCe---------eecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceeccc
Q 021156          145 DNSLSYIEEGATH--VIVTSY---------VFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDV  213 (316)
Q Consensus       145 e~~~~~l~~Gad~--VVigt~---------~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~  213 (316)
                      ++++++.+.|...  +=+|..         ...+    .+.++.+.+.+| + +-+.+|+.   +       +|...   
T Consensus       171 ~~a~~~~~~Gf~~iKlKvg~~~~~~~~~~~~~~d----i~~v~avR~a~~-d-~~L~vDaN---~-------~w~~~---  231 (393)
T 3u9i_A          171 RAAQAIVARGVTTIKIKIGAGDPDATTIRTMEHD----LARIVAIRDVAP-T-ARLILDGN---C-------GYTAP---  231 (393)
T ss_dssp             HHHHHHHTTTCCEEEEECC-------CHHHHHHH----HHHHHHHHHHST-T-SEEEEECC---S-------CCCHH---
T ss_pred             HHHHHHHHcCCCeEEEEeCCCcccccccccHHHH----HHHHHHHHHHCC-C-CeEEEEcc---C-------CCCHH---
Confidence            4567778889775  445554         2233    788999999895 4 47888873   2       45421   


Q ss_pred             CHHHHHHHH--HHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          214 YLDERVLDF--LASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       214 ~~~e~a~~~--~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      +..++++.+  .+.++..+  =.     =...-|++.++++++.+++||.+.=-+.+..|+.++++.+  +..++.=+..
T Consensus       232 ~A~~~~~~L~~~~~~i~~i--Ee-----P~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~--a~d~i~~k~~  302 (393)
T 3u9i_A          232 DALRLLDMLGVHGIVPALF--EQ-----PVAKDDEEGLRRLTATRRVPVAADESVASATDAARLARNA--AVDVLNIKLM  302 (393)
T ss_dssp             HHHHHHHTTTTTTCCCSEE--EC-----CSCTTCTTHHHHHHHTCSSCEEESTTCCSHHHHHHHHHTT--CCSEEEECHH
T ss_pred             HHHHHHHHHhhCCCCeEEE--EC-----CCCCCcHHHHHHHHhhCCCcEEeCCcCCCHHHHHHHHHcC--CCCEEEeccc
Confidence            234555555  44444322  11     1122277889999988899988887899999999999988  4445544444


Q ss_pred             hhccCcccHHHHHHHHHhh
Q 021156          292 DIFGGNLAYKDVVAWHAQQ  310 (316)
Q Consensus       292 ~~~~g~~~~~~~~~~~~~~  310 (316)
                        .+|-....++.++++++
T Consensus       303 --~GGit~~~~ia~~A~~~  319 (393)
T 3u9i_A          303 --KCGIVEALDIAAIARTA  319 (393)
T ss_dssp             --HHCHHHHHHHHHHHHHH
T ss_pred             --ccCHHHHHHHHHHHHHc
Confidence              34433344444455443

>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A

Probab=85.62  E-value=4.7  Score=36.76  Aligned_cols=90  Identities=12%  Similarity=0.128  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHcCCCEEEEeecCCccccCCCC--HHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHH----HhCCCcCEEE
Q 021156          215 LDERVLDFLASYADEFLVHGVDVEGKKLGID--DELVALLGKYS--PIPVTYAGGVTTMADLEKIK----VAGIGRVDVT  286 (316)
Q Consensus       215 ~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d--~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~----~~G~g~~gVi  286 (316)
                      +...++.+.+.|++.+++..-+-++..-..+  .++++...+.+  ++|||++-|-.+.++..++.    +.|  +++++
T Consensus        34 l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~G--adavl  111 (303)
T 2wkj_A           34 LRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYG--FDAVS  111 (303)
T ss_dssp             HHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHHT--CSEEE
T ss_pred             HHHHHHHHHHcCCCEEEECeeccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhCC--CCEEE
Confidence            4567788889999999888766555433332  23455555433  68999988877766665544    346  99999


Q ss_pred             EccchhhccCcccHHHHHHHHHh
Q 021156          287 VGSALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       287 vG~Al~~~~g~~~~~~~~~~~~~  309 (316)
                      +-.-.  |..+ +-+++.++.++
T Consensus       112 v~~P~--y~~~-s~~~l~~~f~~  131 (303)
T 2wkj_A          112 AVTPF--YYPF-SFEEHCDHYRA  131 (303)
T ss_dssp             EECCC--SSCC-CHHHHHHHHHH
T ss_pred             ecCCC--CCCC-CHHHHHHHHHH
Confidence            99988  7544 78888877654

>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*

Probab=85.33  E-value=1.1  Score=40.45  Aligned_cols=67  Identities=18%  Similarity=0.115  Sum_probs=45.0

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHh-----CCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeec
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHA-----YPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~-----~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      ++.++ +...++|++   +|-||.-  ....+.+.++.     -.+|+.+-|||+.+.+..+.++|+|.+.+|+....
T Consensus       191 tlee~-~~A~~aGaD---~I~ld~~--~~~~l~~~v~~l~~~~~~~~i~AsGGI~~~ni~~~~~aGaD~i~vGs~i~~  262 (273)
T 2b7n_A          191 SFEEA-KNAMNAGAD---IVMCDNL--SVLETKEIAAYRDAHYPFVLLEASGNISLESINAYAKSGVDAISVGALIHQ  262 (273)
T ss_dssp             SHHHH-HHHHHHTCS---EEEEETC--CHHHHHHHHHHHHHHCTTCEEEEESSCCTTTHHHHHTTTCSEEECTHHHHT
T ss_pred             CHHHH-HHHHHcCCC---EEEECCC--CHHHHHHHHHHhhccCCCcEEEEECCCCHHHHHHHHHcCCcEEEEcHHhcC
Confidence            45443 333456766   4445542  23334333332     13899999999989999999999999999997554

>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A

Probab=85.26  E-value=4.8  Score=36.79  Aligned_cols=90  Identities=18%  Similarity=0.173  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHcCCCEEEEeecCCccccCCCC--HHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHH----HhCCCcCEEE
Q 021156          215 LDERVLDFLASYADEFLVHGVDVEGKKLGID--DELVALLGKYS--PIPVTYAGGVTTMADLEKIK----VAGIGRVDVT  286 (316)
Q Consensus       215 ~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d--~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~----~~G~g~~gVi  286 (316)
                      +...++.+.+.|++.+++..-+-++..-..+  .++++...+.+  ++|||++-|-.+.++..++.    +.|  +++++
T Consensus        35 l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~~st~~ai~la~~A~~~G--adavl  112 (306)
T 1o5k_A           35 YERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLG--ANGVL  112 (306)
T ss_dssp             HHHHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHT--CSEEE
T ss_pred             HHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEcCCCccHHHHHHHHHHHHhcC--CCEEE
Confidence            4567888889999999887766554433332  23455555433  58999998887777765544    346  99999


Q ss_pred             EccchhhccCcccHHHHHHHHHh
Q 021156          287 VGSALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       287 vG~Al~~~~g~~~~~~~~~~~~~  309 (316)
                      +-.-.  |.. .+-+++.++.++
T Consensus       113 v~~P~--y~~-~s~~~l~~~f~~  132 (306)
T 1o5k_A          113 VVTPY--YNK-PTQEGLYQHYKY  132 (306)
T ss_dssp             EECCC--SSC-CCHHHHHHHHHH
T ss_pred             ECCCC--CCC-CCHHHHHHHHHH
Confidence            99988  754 477888887655

>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}

Probab=85.20  E-value=7.4  Score=31.97  Aligned_cols=67  Identities=10%  Similarity=0.055  Sum_probs=40.9

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCC-cccHHHHHHHHHhC---CCcEEEecCCCHHHHHHHHHcCCCEEEe
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGAD-PLSKAAAIEALHAY---PGGLQVGGGINSDNSLSYIEEGATHVIV  160 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~-~~~~~~i~~~v~~~---~~pl~vGGGIr~e~~~~~l~~Gad~VVi  160 (316)
                      .|.++++...+.+++-+-+--+... ...-..+++.+++.   ++++++||-+-.++...+.+.|+|.+..
T Consensus        57 p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i~~L~~~g~~~i~v~vGG~~~~~~~~~l~~~G~d~v~~  127 (161)
T 2yxb_A           57 TPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLMAKLRELGADDIPVVLGGTIPIPDLEPLRSLGIREIFL  127 (161)
T ss_dssp             CHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHHHHHHHTTCTTSCEEEEECCCHHHHHHHHHTTCCEEEC
T ss_pred             CHHHHHHHHHhcCCCEEEEEeechhhHHHHHHHHHHHHhcCCCCCEEEEeCCCchhcHHHHHHCCCcEEEC
Confidence            4666666666666553333222222 12334455555542   4889999977677777788899997664

>1yya_A Triosephosphate isomerase; riken structural genomics/proteom initiative, RSGI, structural genomics; 1.60A {Thermus thermophilus}

Probab=85.16  E-value=0.86  Score=40.87  Aligned_cols=45  Identities=20%  Similarity=0.293  Sum_probs=39.2

Q ss_pred             CCcEEEecCCCHHHHHHHHHc-CCCEEEeCCeeecCCCCCHHHHHHHHHHh
Q 021156          133 PGGLQVGGGINSDNSLSYIEE-GATHVIVTSYVFNNGQMDLERLKDLVRVV  182 (316)
Q Consensus       133 ~~pl~vGGGIr~e~~~~~l~~-Gad~VVigt~~~~~~~~~~eli~ei~~~~  182 (316)
                      .++|++||+++.+++..++.. ++|-+.||.+.++     ++-+.++.+..
T Consensus       204 ~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgAsL~-----a~~F~~ii~~~  249 (250)
T 1yya_A          204 RVRILYGGSVNPKNFADLLSMPNVDGGLVGGASLE-----LESFLALLRIA  249 (250)
T ss_dssp             TCEEEEESSCCTTTHHHHHTSTTCCEEEESGGGSS-----HHHHHHHHHHH
T ss_pred             ceeEEEcCCCCHHHHHHHHcCCCCCeeEeeHHHhC-----hHHHHHHHHhc
Confidence            589999999999999999987 9999999999998     77677776643

>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A

Probab=84.98  E-value=3.9  Score=37.43  Aligned_cols=93  Identities=13%  Similarity=0.054  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHcCCCEEEEeecCCccccCCCC--HHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHh--CCCcCEEEEc
Q 021156          215 LDERVLDFLASYADEFLVHGVDVEGKKLGID--DELVALLGKYS--PIPVTYAGGVTTMADLEKIKVA--GIGRVDVTVG  288 (316)
Q Consensus       215 ~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d--~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~--G~g~~gVivG  288 (316)
                      +...++.+.+.|++.+++..-+-++..--.+  .++++...+.+  ++|||++-|-.+.++..++.+.  ..|++++++-
T Consensus        31 l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~  110 (309)
T 3fkr_A           31 QKRAVDFMIDAGSDGLCILANFSEQFAITDDERDVLTRTILEHVAGRVPVIVTTSHYSTQVCAARSLRAQQLGAAMVMAM  110 (309)
T ss_dssp             HHHHHHHHHHTTCSCEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEC
T ss_pred             HHHHHHHHHHcCCCEEEECccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCchHHHHHHHHHHHHHcCCCEEEEc
Confidence            4566788889999999887766554433332  23555555543  6899999777666666554432  1149999999


Q ss_pred             cchhhcc--CcccHHHHHHHHHh
Q 021156          289 SALDIFG--GNLAYKDVVAWHAQ  309 (316)
Q Consensus       289 ~Al~~~~--g~~~~~~~~~~~~~  309 (316)
                      .-.  |.  .+.+-+++.++.++
T Consensus       111 ~Py--y~~~~~~s~~~l~~~f~~  131 (309)
T 3fkr_A          111 PPY--HGATFRVPEAQIFEFYAR  131 (309)
T ss_dssp             CSC--BTTTBCCCHHHHHHHHHH
T ss_pred             CCC--CccCCCCCHHHHHHHHHH
Confidence            888  73  35578888887654

>1p1x_A Deoxyribose-phosphate aldolase; alpha-beta barrel, TIM barrel, lyase; 0.99A {Escherichia coli} SCOP: c.1.10.1 PDB: 1jcl_A 1jcj_A* 1ktn_A 3npv_B 3npu_A 3npw_A 3nq2_A 3npx_A 3nq8_A 3q2d_A* 3nr0_A 3nqv_A

Probab=84.95  E-value=2.2  Score=38.40  Aligned_cols=117  Identities=17%  Similarity=0.138  Sum_probs=68.0

Q ss_pred             HHHHHHHHcCCCEE--EeCCeeecCCCC--CHHHHHHHHHHhcC-ceE-EEeeeeeecCCeeEEEeCCcceecccC-HHH
Q 021156          145 DNSLSYIEEGATHV--IVTSYVFNNGQM--DLERLKDLVRVVGK-QRL-VLDLSCRKKDGKYAIVTDRWQKFSDVY-LDE  217 (316)
Q Consensus       145 e~~~~~l~~Gad~V--Vigt~~~~~~~~--~~eli~ei~~~~G~-~~I-vvslD~k~~~g~~~v~~~gw~~~~~~~-~~e  217 (316)
                      .+++.+++.||+-|  |++-..+.++..  -.+.+.++++..+. ..+ -+-|.            .+..  ++.. ...
T Consensus        89 ~E~~~Av~~GAdEIDmVinig~l~~g~~~~v~~ei~~v~~a~~~~g~~lKvIlE------------t~~L--~d~e~i~~  154 (260)
T 1p1x_A           89 AETRAAIAYGADEVDVVFPYRALMAGNEQVGFDLVKACKEACAAANVLLKVIIE------------TGEL--KDEALIRK  154 (260)
T ss_dssp             HHHHHHHHHTCSEEEEECCHHHHHTTCCHHHHHHHHHHHHHHHHTTCEEEEECC------------HHHH--CSHHHHHH
T ss_pred             HHHHHHHHcCCCEEEEeccHHhhhCCCHHHHHHHHHHHHHHhcccCCeEEEEEe------------cccC--CcHHHHHH
Confidence            57889999999964  444443333321  13445555555431 111 11111            1111  1112 335


Q ss_pred             HHHHHHHcCCCEEEEeecCCcccc-CCCCHH---HHHHHhh----cCCCcEEEEeCCCCHHHHHHHHHhC
Q 021156          218 RVLDFLASYADEFLVHGVDVEGKK-LGIDDE---LVALLGK----YSPIPVTYAGGVTTMADLEKIKVAG  279 (316)
Q Consensus       218 ~a~~~~~~Ga~~ilvtdi~~dG~~-~G~d~e---li~~l~~----~~~iPVIasGGI~s~eDi~~l~~~G  279 (316)
                      .++...+.|++.|= |+   .|.. .|...+   ++++..+    -.++||-++|||++.+|+.+++++|
T Consensus       155 a~~ia~eaGADfVK-TS---TGf~~~gAt~e~v~lm~~~I~~~~~g~~v~VKaaGGIrt~~~al~~i~ag  220 (260)
T 1p1x_A          155 ASEISIKAGADFIK-TS---TGKVAVNATPESARIMMEVIRDMGVEKTVGFKPAGGVRTAEDAQKYLAIA  220 (260)
T ss_dssp             HHHHHHHTTCSEEE-CC---CSCSSCCCCHHHHHHHHHHHHHHTCTTTCEEECBSSCCSHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCEEE-eC---CCCCCCCCCHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHhh
Confidence            67788899999663 33   2444 345677   4444422    1468999999999999999999986

>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0

Probab=84.94  E-value=5.4  Score=36.21  Aligned_cols=90  Identities=12%  Similarity=0.154  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHcCCCEEEEeecCCccccCCCC--HHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHH----hCCCcCEEE
Q 021156          215 LDERVLDFLASYADEFLVHGVDVEGKKLGID--DELVALLGKYS--PIPVTYAGGVTTMADLEKIKV----AGIGRVDVT  286 (316)
Q Consensus       215 ~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d--~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~----~G~g~~gVi  286 (316)
                      +...++.+.+.|++.+++..-+-++..-..+  .++++...+.+  ++|||++-|-.+.++..++.+    .|  +++++
T Consensus        30 l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~G--adavl  107 (297)
T 3flu_A           30 LRDLIDWHIENGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVAKRVPVIAGTGANNTVEAIALSQAAEKAG--ADYTL  107 (297)
T ss_dssp             HHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTT--CSEEE
T ss_pred             HHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcC--CCEEE
Confidence            4456778889999999888766555443332  12555555543  689999888777777655543    45  99999


Q ss_pred             EccchhhccCcccHHHHHHHHHh
Q 021156          287 VGSALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       287 vG~Al~~~~g~~~~~~~~~~~~~  309 (316)
                      +-.-.  |. +.+-+++.++.++
T Consensus       108 v~~P~--y~-~~~~~~l~~~f~~  127 (297)
T 3flu_A          108 SVVPY--YN-KPSQEGIYQHFKT  127 (297)
T ss_dssp             EECCC--SS-CCCHHHHHHHHHH
T ss_pred             ECCCC--CC-CCCHHHHHHHHHH
Confidence            99888  75 4477888877654

>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*

Probab=84.91  E-value=4.3  Score=36.98  Aligned_cols=92  Identities=8%  Similarity=0.046  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHcCCCEEEEeecCCccccCCCC--HHHHHHHhhcC---CCcEEEEeCCCCHHHHHHHHHhC--CCcCEEEE
Q 021156          215 LDERVLDFLASYADEFLVHGVDVEGKKLGID--DELVALLGKYS---PIPVTYAGGVTTMADLEKIKVAG--IGRVDVTV  287 (316)
Q Consensus       215 ~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d--~eli~~l~~~~---~iPVIasGGI~s~eDi~~l~~~G--~g~~gViv  287 (316)
                      +...++.+.+.|++.+++..-+-++..-..+  .++++...+.+   ++|||++-|-.+.++..++.+.-  .|++++++
T Consensus        30 l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g~rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv  109 (301)
T 3m5v_A           30 YARLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGADGILS  109 (301)
T ss_dssp             HHHHHHHHHHTTCCEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEECCCSSHHHHHHHHHHHHHTTCSEEEE
T ss_pred             HHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence            4567788889999999877766554433332  12555555542   58999988877777766554321  14999999


Q ss_pred             ccchhhccCcccHHHHHHHHHh
Q 021156          288 GSALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       288 G~Al~~~~g~~~~~~~~~~~~~  309 (316)
                      -.-.  |.. .+-+++.++.++
T Consensus       110 ~~P~--y~~-~s~~~l~~~f~~  128 (301)
T 3m5v_A          110 VAPY--YNK-PTQQGLYEHYKA  128 (301)
T ss_dssp             ECCC--SSC-CCHHHHHHHHHH
T ss_pred             cCCC--CCC-CCHHHHHHHHHH
Confidence            9888  754 477888887655

>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}

Probab=84.76  E-value=4.5  Score=37.23  Aligned_cols=91  Identities=14%  Similarity=0.085  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHcCCCEEEEeecCCccccCCCC--HHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHH----hCCCcCEEE
Q 021156          215 LDERVLDFLASYADEFLVHGVDVEGKKLGID--DELVALLGKYS--PIPVTYAGGVTTMADLEKIKV----AGIGRVDVT  286 (316)
Q Consensus       215 ~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d--~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~----~G~g~~gVi  286 (316)
                      +..+++.+.+.|++.+++..-+-++..-..+  .++++...+.+  ++|||++-|-.+.++..++.+    .|  +++++
T Consensus        34 l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~G--adavl  111 (318)
T 3qfe_A           34 QERYYAYLARSGLTGLVILGTNAEAFLLTREERAQLIATARKAVGPDFPIMAGVGAHSTRQVLEHINDASVAG--ANYVL  111 (318)
T ss_dssp             HHHHHHHHHTTTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHCTTSCEEEECCCSSHHHHHHHHHHHHHHT--CSEEE
T ss_pred             HHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHHcC--CCEEE
Confidence            4567788889999999888766554443332  23555555543  689999888777777665543    45  99999


Q ss_pred             Eccchhhcc-CcccHHHHHHHHHh
Q 021156          287 VGSALDIFG-GNLAYKDVVAWHAQ  309 (316)
Q Consensus       287 vG~Al~~~~-g~~~~~~~~~~~~~  309 (316)
                      +-.-.  |- .+.+-+++.++.++
T Consensus       112 v~~P~--y~~kp~~~~~l~~~f~~  133 (318)
T 3qfe_A          112 VLPPA--YFGKATTPPVIKSFFDD  133 (318)
T ss_dssp             ECCCC--C---CCCHHHHHHHHHH
T ss_pred             EeCCc--ccCCCCCHHHHHHHHHH
Confidence            99886  54 44677888877654

>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}

Probab=84.58  E-value=5.1  Score=37.08  Aligned_cols=90  Identities=10%  Similarity=0.035  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHcCCCEEEEeecCCccccCCCC--HHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHH----HhCCCcCEEE
Q 021156          215 LDERVLDFLASYADEFLVHGVDVEGKKLGID--DELVALLGKYS--PIPVTYAGGVTTMADLEKIK----VAGIGRVDVT  286 (316)
Q Consensus       215 ~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d--~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~----~~G~g~~gVi  286 (316)
                      +...++.+.+.|++.+++..-+-++..--.+  .++++.+.+.+  ++|||++-|-.+.++..++.    +.|  +++++
T Consensus        57 l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~G--adavl  134 (332)
T 2r8w_A           57 FSALIARLDAAEVDSVGILGSTGIYMYLTREERRRAIEAAATILRGRRTLMAGIGALRTDEAVALAKDAEAAG--ADALL  134 (332)
T ss_dssp             HHHHHHHHHHHTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECCSSHHHHHHHHHHHHHHT--CSEEE
T ss_pred             HHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcC--CCEEE
Confidence            4567788889999999887766554433222  23455555443  58999988887776665544    346  99999


Q ss_pred             EccchhhccCcccHHHHHHHHHh
Q 021156          287 VGSALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       287 vG~Al~~~~g~~~~~~~~~~~~~  309 (316)
                      +-.-.  |. +.+-+++.++.++
T Consensus       135 v~~P~--Y~-~~s~~~l~~~f~~  154 (332)
T 2r8w_A          135 LAPVS--YT-PLTQEEAYHHFAA  154 (332)
T ss_dssp             ECCCC--SS-CCCHHHHHHHHHH
T ss_pred             ECCCC--CC-CCCHHHHHHHHHH
Confidence            99988  74 4577888877654

>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A

Probab=84.51  E-value=5.3  Score=36.15  Aligned_cols=90  Identities=10%  Similarity=0.169  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHcCCCEEEEeecCCccccCCCC--HHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHH----HhCCCcCEEE
Q 021156          215 LDERVLDFLASYADEFLVHGVDVEGKKLGID--DELVALLGKYS--PIPVTYAGGVTTMADLEKIK----VAGIGRVDVT  286 (316)
Q Consensus       215 ~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d--~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~----~~G~g~~gVi  286 (316)
                      +...++.+.+.|++.+++..-+-++..-..+  .++++...+.+  ++|||++-|-.+.++..++.    +.|  +++++
T Consensus        24 l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~G--adavl  101 (291)
T 3tak_A           24 LEKLVEWHIEQGTNSIVAVGTTGEASTLSMEEHTQVIKEIIRVANKRIPIIAGTGANSTREAIELTKAAKDLG--ADAAL  101 (291)
T ss_dssp             HHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHHT--CSEEE
T ss_pred             HHHHHHHHHHCCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHhcC--CCEEE
Confidence            4456778889999999887766554433332  22555555433  58999988877777765544    446  99999


Q ss_pred             EccchhhccCcccHHHHHHHHHh
Q 021156          287 VGSALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       287 vG~Al~~~~g~~~~~~~~~~~~~  309 (316)
                      +-.-.  |. +.+-+++.++.++
T Consensus       102 v~~P~--y~-~~~~~~l~~~f~~  121 (291)
T 3tak_A          102 LVTPY--YN-KPTQEGLYQHYKA  121 (291)
T ss_dssp             EECCC--SS-CCCHHHHHHHHHH
T ss_pred             EcCCC--CC-CCCHHHHHHHHHH
Confidence            99888  75 4477888877654

>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A

Probab=84.44  E-value=4.8  Score=36.80  Aligned_cols=91  Identities=13%  Similarity=0.089  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHcCCCEEEEeecCCccccCCCC--HHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHH----HhCCCcCEEE
Q 021156          215 LDERVLDFLASYADEFLVHGVDVEGKKLGID--DELVALLGKYS--PIPVTYAGGVTTMADLEKIK----VAGIGRVDVT  286 (316)
Q Consensus       215 ~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d--~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~----~~G~g~~gVi  286 (316)
                      +...++.+.+.|++.+++..-+-++..-..+  .++++.+.+.+  ++|||++-|-.+.++..++.    +.|  +++++
T Consensus        37 l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~G--adavl  114 (307)
T 3s5o_A           37 LEENLHKLGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAMPKNRLLLAGSGCESTQATVEMTVSMAQVG--ADAAM  114 (307)
T ss_dssp             HHHHHHHHTTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHTSCTTSEEEEECCCSSHHHHHHHHHHHHHTT--CSEEE
T ss_pred             HHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHcCCCCcEEEecCCCCHHHHHHHHHHHHHcC--CCEEE
Confidence            4456777888999999888776555443332  23566666654  68999988876766665544    345  99999


Q ss_pred             EccchhhccC-cccHHHHHHHHHh
Q 021156          287 VGSALDIFGG-NLAYKDVVAWHAQ  309 (316)
Q Consensus       287 vG~Al~~~~g-~~~~~~~~~~~~~  309 (316)
                      +-.-.  |.. +.+-+++.++.++
T Consensus       115 v~~P~--y~~~~~s~~~l~~~f~~  136 (307)
T 3s5o_A          115 VVTPC--YYRGRMSSAALIHHYTK  136 (307)
T ss_dssp             EECCC--TTGGGCCHHHHHHHHHH
T ss_pred             EcCCC--cCCCCCCHHHHHHHHHH
Confidence            98888  754 3677888887655

>1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel, protein-inhibitor complex, homodimer, lyase; HET: BMQ; 2.50A {Escherichia coli} SCOP: c.1.2.3 PDB: 1jjk_A* 1l2u_A

Probab=84.38  E-value=0.59  Score=41.48  Aligned_cols=48  Identities=17%  Similarity=0.149  Sum_probs=36.6

Q ss_pred             CCcEEEecCCCHH-----------HHHHHHHcCCCEEEeCCeeecCCCCCH-HHHHHHHHHh
Q 021156          133 PGGLQVGGGINSD-----------NSLSYIEEGATHVIVTSYVFNNGQMDL-ERLKDLVRVV  182 (316)
Q Consensus       133 ~~pl~vGGGIr~e-----------~~~~~l~~Gad~VVigt~~~~~~~~~~-eli~ei~~~~  182 (316)
                      +.+++|.|||+.+           .++.++++||+.+|+|+..++.+  || +.++++.+..
T Consensus       182 ~~~i~v~gGI~~~g~~~~dq~rv~t~~~a~~aGad~iVvGr~I~~a~--dp~~a~~~l~~~i  241 (245)
T 1eix_A          182 QEFKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVTQSV--DPAQTLKAINASL  241 (245)
T ss_dssp             SSSEEEECCBCCTTCCCTTCCSCBCHHHHHHTTCSEEEECHHHHTSS--SHHHHHHHHHHHT
T ss_pred             CCCEEEECCcCCCCCCccchhccCCHHHHHHcCCCEEEECHHHcCCC--CHHHHHHHHHHHH
Confidence            3579999999976           79999999999999999988641  13 4455554433

>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}

Probab=84.34  E-value=6.1  Score=36.00  Aligned_cols=92  Identities=12%  Similarity=0.083  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHcCCCEEEEeecCCccccCCCC--HHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHh--CCCcCEEEEc
Q 021156          215 LDERVLDFLASYADEFLVHGVDVEGKKLGID--DELVALLGKYS--PIPVTYAGGVTTMADLEKIKVA--GIGRVDVTVG  288 (316)
Q Consensus       215 ~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d--~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~--G~g~~gVivG  288 (316)
                      +...++.+.+.|++.+++..-+-++..-..+  .++++.+.+.+  ++|||++-|-.+.++..++.+.  ..|++++++-
T Consensus        39 l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~st~~ai~la~~A~~~Gadavlv~  118 (304)
T 3cpr_A           39 GREVAAYLVDKGLDSLVLAGTTGESPTTTAAEKLELLKAVREEVGDRAKLIAGVGTNNTRTSVELAEAAASAGADGLLVV  118 (304)
T ss_dssp             HHHHHHHHHHTTCCEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             HHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEecCCCCCHHHHHHHHHHHHhcCCCEEEEC
Confidence            4567788889999999887766554433332  23455555543  5899999888777766554432  1149999999


Q ss_pred             cchhhccCcccHHHHHHHHHh
Q 021156          289 SALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       289 ~Al~~~~g~~~~~~~~~~~~~  309 (316)
                      .-.  |. +.+-+++.++.++
T Consensus       119 ~P~--y~-~~~~~~l~~~f~~  136 (304)
T 3cpr_A          119 TPY--YS-KPSQEGLLAHFGA  136 (304)
T ss_dssp             CCC--SS-CCCHHHHHHHHHH
T ss_pred             CCC--CC-CCCHHHHHHHHHH
Confidence            988  74 4577888877654

>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*

Probab=84.24  E-value=1.3  Score=48.98  Aligned_cols=72  Identities=10%  Similarity=-0.031  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHcCCCcceEEEecCCc---c---------cHHHHH----HHHHh----CCCcEEEecCCCH-HHHHHHHHc
Q 021156           95 AAEFANLYKEDGLTGGHAIMLGADP---L---------SKAAAI----EALHA----YPGGLQVGGGINS-DNSLSYIEE  153 (316)
Q Consensus        95 p~e~a~~~~~~G~~~l~lvDLda~~---~---------~~~~i~----~~v~~----~~~pl~vGGGIr~-e~~~~~l~~  153 (316)
                      ..+.|+...++|++.+.+--.+++.   +         .....+    +.+..    ..+||+..|||++ .|+.+++.+
T Consensus      1006 i~~~A~~a~~AGAD~IvVsG~eGGTgasp~~~~~~~G~Pt~~aL~ev~~al~~~glr~~VpVIAdGGIrtG~DVakALaL 1085 (1479)
T 1ea0_A         1006 IGTIAAGVAKANADIILISGNSGGTGASPQTSIKFAGLPWEMGLSEVHQVLTLNRLRHRVRLRTDGGLKTGRDIVIAAML 1085 (1479)
T ss_dssp             HHHHHHHHHHTTCSEEEEECTTCCCSSEETTHHHHSCCCHHHHHHHHHHHHHTTTCTTTSEEEEESSCCSHHHHHHHHHT
T ss_pred             hHHHHHHHHHcCCcEEEEcCCCCCCCCCchhhhcCCchhHHHHHHHHHHHHHHcCCCCCceEEEECCCCCHHHHHHHHHc
Confidence            4457888888999876542232221   0         111122    22222    2599999999995 999999999


Q ss_pred             CCCEEEeCCeeec
Q 021156          154 GATHVIVTSYVFN  166 (316)
Q Consensus       154 Gad~VVigt~~~~  166 (316)
                      ||+-|-+||.++.
T Consensus      1086 GAdaV~iGTafL~ 1098 (1479)
T 1ea0_A         1086 GAEEFGIGTASLI 1098 (1479)
T ss_dssp             TCSEEECCHHHHH
T ss_pred             CCCeeeEcHHHHH
Confidence            9999999998753

>3vdg_A Probable glucarate dehydratase; enolase, magnesium binding site, lyase; 1.90A {Mycobacterium smegmatis str} PDB: 3vfc_A*

Probab=84.07  E-value=4.3  Score=39.22  Aligned_cols=133  Identities=11%  Similarity=0.088  Sum_probs=82.8

Q ss_pred             HHHHHHHc-CCC--EEEeCCe-eecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHH
Q 021156          146 NSLSYIEE-GAT--HVIVTSY-VFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLD  221 (316)
Q Consensus       146 ~~~~~l~~-Gad--~VVigt~-~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~  221 (316)
                      +++++.+. |..  |+=+|.. ..++    .+.++.+.+.+ ++ +-+.+|.   |       .+|...   +...+++.
T Consensus       200 ~a~~~~~~~Gf~~~KlKvG~~~~~~D----i~~v~avRea~-~d-~~L~vDa---N-------~~w~~~---~Ai~~~~~  260 (445)
T 3vdg_A          200 QARRMIDEYGFSAIKLKGGVFAPEEE----MAAVEALRAAF-PD-HPLRLDP---N-------AAWTPQ---TSVKVAAG  260 (445)
T ss_dssp             HHHHHHHHHCCSSEEEECSSSCHHHH----HHHHHHHHHHC-TT-SCEEEEC---T-------TCSCHH---HHHHHHHH
T ss_pred             HHHHHHHhcCCCEEEECCCCCCHHHH----HHHHHHHHHhC-CC-CcEEEEC---C-------CCCCHH---HHHHHHHH
Confidence            45566664 866  4445642 2333    78888888888 44 5577887   3       356421   24455666


Q ss_pred             HHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHH
Q 021156          222 FLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYK  301 (316)
Q Consensus       222 ~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~  301 (316)
                      +.+. +..+  =.-    .   +|++.++++++.+++||.+.--+.+..|+.++++.+ .++-+.+--+-  .+|-....
T Consensus       261 L~~~-l~~i--EeP----~---~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~-a~div~~d~~~--~GGitea~  327 (445)
T 3vdg_A          261 LEGV-LEYL--EDP----T---PGLDGMAEVAAQAPMPLATNMCVVAFDQLPAAVAKN-SVQVVLSDHHY--WGGLQRSR  327 (445)
T ss_dssp             TTTT-CSEE--ECC----S---SSHHHHHHHHHHCSSCEEESSSCCSGGGHHHHHHHT-CCSEEEECHHH--HTSHHHHH
T ss_pred             HhhH-HHee--eCC----C---CCHHHHHHHHhcCCCCEEcCCcCCCHHHHHHHHHcC-CCCEEeeCcce--eCCHHHHH
Confidence            6554 3321  111    1   378999999998999998877789999999999988 35545554333  44543444


Q ss_pred             HHHHHHHhh
Q 021156          302 DVVAWHAQQ  310 (316)
Q Consensus       302 ~~~~~~~~~  310 (316)
                      ++.+.++++
T Consensus       328 kia~lA~~~  336 (445)
T 3vdg_A          328 LLAGICDTF  336 (445)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHc
Confidence            555555543

>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*

Probab=84.07  E-value=5  Score=37.38  Aligned_cols=90  Identities=16%  Similarity=0.201  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHcCCCEEEEeecCCccccCCCC--HHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHH----HhCCCcCEEE
Q 021156          215 LDERVLDFLASYADEFLVHGVDVEGKKLGID--DELVALLGKYS--PIPVTYAGGVTTMADLEKIK----VAGIGRVDVT  286 (316)
Q Consensus       215 ~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d--~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~----~~G~g~~gVi  286 (316)
                      +...++.+.+.|++.+++..-+-++..-..+  .++++.+.+.+  ++|||++-|-.+.++..++.    +.|  +++++
T Consensus        54 l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~G--adavl  131 (343)
T 2v9d_A           54 TAALIDDLIKAGVDGLFFLGSGGEFSQLGAEERKAIARFAIDHVDRRVPVLIGTGGTNARETIELSQHAQQAG--ADGIV  131 (343)
T ss_dssp             HHHHHHHHHHTTCSCEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCSSCHHHHHHHHHHHHHHT--CSEEE
T ss_pred             HHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcC--CCEEE
Confidence            4567788889999999887766554433332  23555555443  68999998877776665544    346  99999


Q ss_pred             EccchhhccCcccHHHHHHHHHh
Q 021156          287 VGSALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       287 vG~Al~~~~g~~~~~~~~~~~~~  309 (316)
                      +-.-.  |..+ +-+++.++.++
T Consensus       132 v~~P~--Y~~~-s~~~l~~~f~~  151 (343)
T 2v9d_A          132 VINPY--YWKV-SEANLIRYFEQ  151 (343)
T ss_dssp             EECCS--SSCC-CHHHHHHHHHH
T ss_pred             ECCCC--CCCC-CHHHHHHHHHH
Confidence            99988  8544 78888887654

>3va8_A Probable dehydratase; enolase, magnesium binding site, lyase; 2.00A {Gibberella zeae}

Probab=84.02  E-value=4.1  Score=39.38  Aligned_cols=133  Identities=13%  Similarity=0.122  Sum_probs=82.6

Q ss_pred             HHHHHHHc-CCC--EEEeCCe-eecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHH
Q 021156          146 NSLSYIEE-GAT--HVIVTSY-VFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLD  221 (316)
Q Consensus       146 ~~~~~l~~-Gad--~VVigt~-~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~  221 (316)
                      +++++.+. |..  |+=+|.. ..++    .+.++.+.+.+ ++ +-+.+|.   |       .+|...   +...++++
T Consensus       198 ~a~~~~~~~Gf~~~KlKvG~~~~~~D----i~~v~avRea~-~~-~~L~vDa---N-------~~w~~~---~Ai~~~~~  258 (445)
T 3va8_A          198 QAKKIIDEYGFKAIKLKGGVFPPADE----VAAIKALHKAF-PG-VPLRLDP---N-------AAWTVE---TSKWVAKE  258 (445)
T ss_dssp             HHHHHHHHHCCSCEEEECSSSCHHHH----HHHHHHHHHHS-TT-CCEEEEC---T-------TCBCHH---HHHHHHHH
T ss_pred             HHHHHHHhcCCCEEEEccCCCCHHHH----HHHHHHHHHhC-CC-CcEeeeC---C-------CCCCHH---HHHHHHHH
Confidence            45566664 876  4445542 2233    77888888888 43 5677887   3       356421   24455666


Q ss_pred             HHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHH
Q 021156          222 FLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYK  301 (316)
Q Consensus       222 ~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~  301 (316)
                      +.+. +..+  =.-    .   +|++.++++++.+++||.+.--+.+..|+.++++.+ .++-+.+--+-  .+|-....
T Consensus       259 L~~~-l~~i--EeP----~---~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~-a~div~~d~~~--~GGitea~  325 (445)
T 3va8_A          259 LEGI-VEYL--EDP----A---GEIEGMAAVAKEASMPLATNMAVVAFDHLPPSILQD-AVQVILSDHHF--WGGLRKSQ  325 (445)
T ss_dssp             TTTT-CSEE--ESC----B---SHHHHHHHHHTTCSSCEEESSSCCSGGGHHHHHHTT-CCSEEEECHHH--HTSHHHHH
T ss_pred             Hhhh-cCeE--eec----C---cCHHHHHHHHHcCCCCEEeCCccCCHHHHHHHHHcC-CCCEEEecchh--cCCHHHHH
Confidence            6554 3321  111    1   378899999999999998877789999999999988 35555554333  44443444


Q ss_pred             HHHHHHHhh
Q 021156          302 DVVAWHAQQ  310 (316)
Q Consensus       302 ~~~~~~~~~  310 (316)
                      ++.++++++
T Consensus       326 kia~lA~~~  334 (445)
T 3va8_A          326 TLASICATW  334 (445)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHc
Confidence            555555543

>3kxq_A Triosephosphate isomerase; ssgcid, NIH, niaid, SBRI, UW, gluconeogenesis, glycolysis, pentose shunt; 1.60A {Bartonella henselae}

Probab=83.99  E-value=8.3  Score=34.91  Aligned_cols=143  Identities=15%  Similarity=0.076  Sum_probs=73.8

Q ss_pred             HHHHHHHcCCCEEEeCCeeecC--CCCCHHHHHHHHHHhcC-ceEEEeeeeeecCCeeEEEeCCcceecccCHHHH-HHH
Q 021156          146 NSLSYIEEGATHVIVTSYVFNN--GQMDLERLKDLVRVVGK-QRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDER-VLD  221 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~~~~~--~~~~~eli~ei~~~~G~-~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~-a~~  221 (316)
                      ....+.+.||+.|+||=.-++.  ++.|...-+++....-. =..++++.=...           ....+ ...+. ..+
T Consensus       104 S~~mLkd~G~~~VIiGHSERR~~f~Etde~V~~Kv~~Al~~GL~pIlCVGEtle-----------eRe~g-~t~~vv~~Q  171 (275)
T 3kxq_A          104 SAFMLKEAGASHVIIGHSERRTVYQESDAIVRAKVQAAWRAGLVALICVGETLE-----------ERKSN-KVLDVLTRQ  171 (275)
T ss_dssp             CHHHHHHHTCSEEEESCHHHHHHTCCCHHHHHHHHHHHHHTTCEEEEEECCCHH-----------HHHTT-CHHHHHHHH
T ss_pred             CHHHHHHcCCCEEEECchhhccccCCCHHHHHHHHHHHHHCCCEEEEEeCCCHH-----------HHHCC-CHHHHHHHH
Confidence            3778889999999999764432  33333333444433311 245666642100           00111 12222 222


Q ss_pred             HHHc---CC---CE-EEEeecCCccccCCCCHHHHHH----Hhhc---------CCCcEEEEeCCCCHHHHHHHHHhCCC
Q 021156          222 FLAS---YA---DE-FLVHGVDVEGKKLGIDDELVAL----LGKY---------SPIPVTYAGGVTTMADLEKIKVAGIG  281 (316)
Q Consensus       222 ~~~~---Ga---~~-ilvtdi~~dG~~~G~d~eli~~----l~~~---------~~iPVIasGGI~s~eDi~~l~~~G~g  281 (316)
                      +...   +.   +- |-|-.+..-||..-...+.+.+    |++.         -.++|+|+|.|.. +.+.+++.+. +
T Consensus       172 l~~~l~~~~~~~~vVIAYEPVWAIGTGktAt~e~aqevh~~IR~~l~~~~~~~a~~~rIlYGGSV~~-~Na~el~~~~-d  249 (275)
T 3kxq_A          172 LEGSLPDGATAENIIIAYEPVWAVGTGNTATSADVAEVHAFIHHKMHSRFGDEGAKIRLLYGGSVKP-SNAFELLSTA-H  249 (275)
T ss_dssp             HHHHSCTTCCTTTEEEEECCCC--------CHHHHHHHHHHHHHHHHHHHHHHHTTSCEEECSCCCT-TTHHHHHTST-T
T ss_pred             HHHHHcCCcccCCEEEEECChhhhcCCCCCCHHHHHHHHHHHHHHHHHhhhhhcccceEEEcCCcCH-hHHHHHHcCC-c
Confidence            2211   22   12 3367888889987666554333    2221         2589999888765 6788888876 6


Q ss_pred             cCEEEEccchhhccCcccHHHHHHHHH
Q 021156          282 RVDVTVGSALDIFGGNLAYKDVVAWHA  308 (316)
Q Consensus       282 ~~gVivG~Al~~~~g~~~~~~~~~~~~  308 (316)
                      +||+.||.|-  +.    .++..+.++
T Consensus       250 IDG~LVGgAS--L~----~~~F~~Ii~  270 (275)
T 3kxq_A          250 VNGALIGGAS--LK----AIDFLTICD  270 (275)
T ss_dssp             CCEEEESGGG--SS----HHHHHHHHG
T ss_pred             cceEEeehhh--cC----HHHHHHHHH
Confidence            9999999998  63    444444444

>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*

Probab=83.97  E-value=6  Score=35.83  Aligned_cols=90  Identities=11%  Similarity=0.168  Sum_probs=62.1

Q ss_pred             HHHHHHHHHH-cCCCEEEEeecCCccccCCCC--HHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHH----hCCCcCEE
Q 021156          215 LDERVLDFLA-SYADEFLVHGVDVEGKKLGID--DELVALLGKYS--PIPVTYAGGVTTMADLEKIKV----AGIGRVDV  285 (316)
Q Consensus       215 ~~e~a~~~~~-~Ga~~ilvtdi~~dG~~~G~d--~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~----~G~g~~gV  285 (316)
                      +...++.+.+ .|++.+++..-+-++..-..+  .++++...+.+  ++|||++-|-.+.++..++.+    .|  ++++
T Consensus        26 l~~lv~~li~~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~G--adav  103 (293)
T 1f6k_A           26 LRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELG--YDCL  103 (293)
T ss_dssp             HHHHHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHHT--CSEE
T ss_pred             HHHHHHHHHhhCCCcEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHhcC--CCEE
Confidence            4566778888 999999887766554433332  23455555433  589999988877777655443    46  9999


Q ss_pred             EEccchhhccCcccHHHHHHHHHh
Q 021156          286 TVGSALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       286 ivG~Al~~~~g~~~~~~~~~~~~~  309 (316)
                      ++-.-.  |.. .+-+++.++.++
T Consensus       104 lv~~P~--y~~-~~~~~l~~~f~~  124 (293)
T 1f6k_A          104 SAVTPF--YYK-FSFPEIKHYYDT  124 (293)
T ss_dssp             EEECCC--SSC-CCHHHHHHHHHH
T ss_pred             EECCCC--CCC-CCHHHHHHHHHH
Confidence            999988  744 477888876654

>1ney_A TIM, triosephosphate isomerase; yeast, DHAP, dihydroxyacetone phosphate, michaelis complex; HET: FTR 13P; 1.20A {Saccharomyces cerevisiae} SCOP: c.1.1.1 PDB: 1nf0_A* 1i45_A* 1ypi_A 2ypi_A 7tim_A* 3ypi_A*

Probab=83.88  E-value=2.3  Score=37.96  Aligned_cols=144  Identities=15%  Similarity=0.109  Sum_probs=78.7

Q ss_pred             HHHHHHHcCCCEEEeCCeeecC--CCCCHHHHHHHHHHh--cCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHH
Q 021156          146 NSLSYIEEGATHVIVTSYVFNN--GQMDLERLKDLVRVV--GKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLD  221 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~~~~~--~~~~~eli~ei~~~~--G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~  221 (316)
                      ....+.++||+.|+||=.-++.  ++.|...-+++....  | =..++++.-..     .-+-.|-..  . -+....+.
T Consensus        78 S~~mL~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~G-L~pI~CvGEtl-----eere~g~t~--~-vv~~Ql~~  148 (247)
T 1ney_A           78 SVDQIKDVGAKYVILGHSERRSYFHEDDKFIADKTKFALGQG-VGVILCIGETL-----EEKKAGKTL--D-VVERQLNA  148 (247)
T ss_dssp             CHHHHHHTTCCEEEESCHHHHHTTCCCHHHHHHHHHHHHHTT-CEEEEEECCCH-----HHHHTTCHH--H-HHHHHHHH
T ss_pred             CHHHHHHcCCCEEEECChhhccccCCCHHHHHHHHHHHHHCC-CEEEEEcCCcH-----HHHHCCCHH--H-HHHHHHHH
Confidence            3778889999999999765432  333333333333332  2 34566664210     000011100  0 01111121


Q ss_pred             HHH---cCCCE-EEEeecCCccccCCCCHHHHHHH----hh----------cCCCcEEEEeCCCCHHHHHHHHHhCCCcC
Q 021156          222 FLA---SYADE-FLVHGVDVEGKKLGIDDELVALL----GK----------YSPIPVTYAGGVTTMADLEKIKVAGIGRV  283 (316)
Q Consensus       222 ~~~---~Ga~~-ilvtdi~~dG~~~G~d~eli~~l----~~----------~~~iPVIasGGI~s~eDi~~l~~~G~g~~  283 (316)
                      ..+   ....- |-|-.+..-||..-.+.+.+.++    ++          .-.++|+++|+|..-+...-+...+  +|
T Consensus       149 ~l~~~~~~~~~vIAYEPvWAIGTG~~Atpe~a~evh~~IR~~l~~~~~~~va~~vrIlYGGSV~~~N~~~l~~~~d--iD  226 (247)
T 1ney_A          149 VLEEVKDFTNVVVAYEPVXAIGTGLAATPEDAQDIHASIRKFLASKLGDKAASELRILYGGSANGSNAVTFKDKAD--VD  226 (247)
T ss_dssp             HHHHCCCCTTEEEEECCGGGTTTSCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHCCEEEESSCCTTTGGGGTTCTT--CC
T ss_pred             HHhchhhhcCEEEEECChhhcCCCCCCCHHHHHHHHHHHHHHHHHhcChhhcccceEEEcCCcCHhHHHHHHcCCC--CC
Confidence            121   11222 33788889999877766544432    22          1147999999999866555444444  99


Q ss_pred             EEEEccchhhccCcccHHHHH
Q 021156          284 DVTVGSALDIFGGNLAYKDVV  304 (316)
Q Consensus       284 gVivG~Al~~~~g~~~~~~~~  304 (316)
                      |+.||.|-  +.  =.|.+++
T Consensus       227 G~LVGgAs--L~--~~F~~Ii  243 (247)
T 1ney_A          227 GFLVGGAS--LK--PEFVDII  243 (247)
T ss_dssp             EEEESGGG--GS--THHHHHH
T ss_pred             eeEeehHH--HH--HHHHHHH
Confidence            99999999  75  3454544

>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A

Probab=83.86  E-value=5.2  Score=36.74  Aligned_cols=90  Identities=12%  Similarity=0.148  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHcCCCEEEEeecCCccccCCCC--HHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHH----hCCCcCEEE
Q 021156          215 LDERVLDFLASYADEFLVHGVDVEGKKLGID--DELVALLGKYS--PIPVTYAGGVTTMADLEKIKV----AGIGRVDVT  286 (316)
Q Consensus       215 ~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d--~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~----~G~g~~gVi  286 (316)
                      +...++.+.+.|++.+++..-+-++..-..+  .++++...+.+  ++|||++-|-.+.++..++.+    .|  +++++
T Consensus        46 l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~eai~la~~A~~~G--adavl  123 (314)
T 3qze_A           46 LAKLVDFHLQEGTNAIVAVGTTGESATLDVEEHIQVIRRVVDQVKGRIPVIAGTGANSTREAVALTEAAKSGG--ADACL  123 (314)
T ss_dssp             HHHHHHHHHHHTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTT--CSEEE
T ss_pred             HHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcC--CCEEE
Confidence            4456777889999999887766554433332  12455555443  589999888877777665543    45  99999


Q ss_pred             EccchhhccCcccHHHHHHHHHh
Q 021156          287 VGSALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       287 vG~Al~~~~g~~~~~~~~~~~~~  309 (316)
                      +-.-.  |. +.+-+++.++.++
T Consensus       124 v~~P~--y~-~~s~~~l~~~f~~  143 (314)
T 3qze_A          124 LVTPY--YN-KPTQEGMYQHFRH  143 (314)
T ss_dssp             EECCC--SS-CCCHHHHHHHHHH
T ss_pred             EcCCC--CC-CCCHHHHHHHHHH
Confidence            99888  75 4577888877654

>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}

Probab=83.77  E-value=4.4  Score=36.83  Aligned_cols=90  Identities=17%  Similarity=0.149  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHcCCCEEEEeecCCccccCCCC--HHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHH----HhCCCcCEEE
Q 021156          215 LDERVLDFLASYADEFLVHGVDVEGKKLGID--DELVALLGKYS--PIPVTYAGGVTTMADLEKIK----VAGIGRVDVT  286 (316)
Q Consensus       215 ~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d--~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~----~~G~g~~gVi  286 (316)
                      +...++.+.+.|++.+++..-+-++..-..+  .++++...+.+  ++|||++-|-.+.++..++.    +.|  +++++
T Consensus        23 l~~lv~~li~~Gv~gi~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~G--adavl  100 (297)
T 2rfg_A           23 LAGLVDWQIKHGAHGLVPVGTTGESPTLTEEEHKRVVALVAEQAQGRVPVIAGAGSNNPVEAVRYAQHAQQAG--ADAVL  100 (297)
T ss_dssp             HHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHHT--CSEEE
T ss_pred             HHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEccCCCCHHHHHHHHHHHHhcC--CCEEE
Confidence            4567788889999998877766554433332  23455555433  58999998887776665544    346  99999


Q ss_pred             EccchhhccCcccHHHHHHHHHh
Q 021156          287 VGSALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       287 vG~Al~~~~g~~~~~~~~~~~~~  309 (316)
                      +-.-.  |.. .+-+++.++.++
T Consensus       101 v~~P~--y~~-~s~~~l~~~f~~  120 (297)
T 2rfg_A          101 CVAGY--YNR-PSQEGLYQHFKM  120 (297)
T ss_dssp             ECCCT--TTC-CCHHHHHHHHHH
T ss_pred             EcCCC--CCC-CCHHHHHHHHHH
Confidence            99988  754 477888877654

>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*

Probab=83.72  E-value=4.2  Score=36.83  Aligned_cols=90  Identities=19%  Similarity=0.182  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHcCCCEEEEeecCCccccCCCC--HHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHH----hCCCcCEEE
Q 021156          215 LDERVLDFLASYADEFLVHGVDVEGKKLGID--DELVALLGKYS--PIPVTYAGGVTTMADLEKIKV----AGIGRVDVT  286 (316)
Q Consensus       215 ~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d--~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~----~G~g~~gVi  286 (316)
                      +...++.+.+.|++.+++..-+-++..-..+  .++++...+.+  ++|||++-|-.+.++..++.+    .|  +++++
T Consensus        24 l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pvi~Gvg~~~t~~ai~la~~a~~~G--adavl  101 (291)
T 3a5f_A           24 LSELIEWHIKSKTDAIIVCGTTGEATTMTETERKETIKFVIDKVNKRIPVIAGTGSNNTAASIAMSKWAESIG--VDGLL  101 (291)
T ss_dssp             HHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTT--CSEEE
T ss_pred             HHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHhcC--CCEEE
Confidence            4566788889999999887766554433332  23455555433  589999988877777655543    45  99999


Q ss_pred             EccchhhccCcccHHHHHHHHHh
Q 021156          287 VGSALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       287 vG~Al~~~~g~~~~~~~~~~~~~  309 (316)
                      +-.-.  |.. .+-+++.++.++
T Consensus       102 v~~P~--y~~-~s~~~l~~~f~~  121 (291)
T 3a5f_A          102 VITPY--YNK-TTQKGLVKHFKA  121 (291)
T ss_dssp             EECCC--SSC-CCHHHHHHHC-C
T ss_pred             EcCCC--CCC-CCHHHHHHHHHH
Confidence            99988  754 478888877554

>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A*

Probab=83.69  E-value=9.5  Score=36.66  Aligned_cols=198  Identities=14%  Similarity=0.052  Sum_probs=99.7

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHhCCCcEEEecCCC--HHHHHHHHHcCCCEEEeC--Ce-eecC
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAYPGGLQVGGGIN--SDNSLSYIEEGATHVIVT--SY-VFNN  167 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~~~pl~vGGGIr--~e~~~~~l~~Gad~VVig--t~-~~~~  167 (316)
                      .+=+++|+.+.+.|++.+-+---.+. +......+.+.+......+-+..|  .++++.++++|++.|-+-  +. .+..
T Consensus        61 eeKl~Ia~~L~~~Gv~~IEvG~P~as-p~d~~~~~~i~~~~~~~~v~~~~r~~~~di~~A~~aG~~~V~i~~s~Sd~~~~  139 (423)
T 3ivs_A           61 EKKIQIAKALDNFGVDYIELTSPVAS-EQSRQDCEAICKLGLKCKILTHIRCHMDDARVAVETGVDGVDVVIGTSQYLRK  139 (423)
T ss_dssp             HHHHHHHHHHHHHTCSEEEECCTTSC-HHHHHHHHHHHTSCCSSEEEEEEESCHHHHHHHHHTTCSEEEEEEEC------
T ss_pred             HHHHHHHHHHHHcCCCEEEEeecccC-HHHHHHHHHHHhcCCCCEEEEeeccChhhHHHHHHcCCCEEEEEeeccHHHHH
Confidence            45668999999999875444211111 111122333333332233334445  588999999999986552  22 1110


Q ss_pred             ---CCC---CHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCcccc
Q 021156          168 ---GQM---DLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKK  241 (316)
Q Consensus       168 ---~~~---~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~  241 (316)
                         ++-   ..+.+.+.++..-..-+-+.+++-          ..|.. ....+.++++.+.+.|+++|.+-|  ..|.+
T Consensus       140 ~~l~~s~~e~l~~~~~~v~~ak~~G~~V~~~~e----------da~r~-d~~~~~~v~~~~~~~Ga~~i~l~D--TvG~~  206 (423)
T 3ivs_A          140 YSHGKDMTYIIDSATEVINFVKSKGIEVRFSSE----------DSFRS-DLVDLLSLYKAVDKIGVNRVGIAD--TVGCA  206 (423)
T ss_dssp             -------CHHHHHHHHHHHHHHTTTCEEEEEEE----------SGGGS-CHHHHHHHHHHHHHHCCSEEEEEE--TTSCC
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHCCCEEEEEEc----------cCcCC-CHHHHHHHHHHHHHhCCCccccCC--ccCcC
Confidence               000   023333333322111111222211          22221 112366888999999999876555  34665


Q ss_pred             CCCCH-HHHHHHhhcCCCcEEEEe----CCCCHHHHHHHHHhCC-CcCEEEEccchhhccCcccHHHHHHHH
Q 021156          242 LGIDD-ELVALLGKYSPIPVTYAG----GVTTMADLEKIKVAGI-GRVDVTVGSALDIFGGNLAYKDVVAWH  307 (316)
Q Consensus       242 ~G~d~-eli~~l~~~~~iPVIasG----GI~s~eDi~~l~~~G~-g~~gVivG~Al~~~~g~~~~~~~~~~~  307 (316)
                      ..... ++++.+++..++|+-+-.    |... .......++|. -+++.+-|-+=  -.|+-++++++..+
T Consensus       207 ~P~~v~~lv~~l~~~~~~~i~~H~Hnd~GlAv-AN~laAv~aGa~~vd~ti~GlGE--RaGNa~Le~vv~~L  275 (423)
T 3ivs_A          207 TPRQVYDLIRTLRGVVSCDIECHFHNDTGMAI-ANAYCALEAGATHIDTSILGIGE--RNGITPLGALLARM  275 (423)
T ss_dssp             CHHHHHHHHHHHHHHCSSEEEEEEBCTTSCHH-HHHHHHHHTTCCEEEEBGGGCSS--TTCBCBHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhcCCeEEEEECCCCchHH-HHHHHHHHhCCCEEEEecccccC--cccchhHHHHHHHH
Confidence            54443 478888877777775544    2222 23444555672 12333333332  33778888887644

>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus}

Probab=83.66  E-value=1.4  Score=39.92  Aligned_cols=180  Identities=14%  Similarity=0.092  Sum_probs=104.9

Q ss_pred             CHHHHHHHHHHcCCCcceEEEec-----CC----cccHHHH----HHHHHhCCCcEEEec------CC-CH-HHHHHHHH
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLG-----AD----PLSKAAA----IEALHAYPGGLQVGG------GI-NS-DNSLSYIE  152 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLd-----a~----~~~~~~i----~~~v~~~~~pl~vGG------GI-r~-e~~~~~l~  152 (316)
                      |+. .|+...++|++.+++=+..     +-    .....++    ..+.+.++.||+++.      +. +. +.++++.+
T Consensus        25 D~~-sA~~~~~aG~~ai~vsg~s~a~~~G~pD~~~vt~~em~~~~~~I~~~~~~pviaD~d~Gyg~~~~~~~~~v~~l~~  103 (275)
T 2ze3_A           25 DVA-SARLLEAAGFTAIGTTSAGIAHARGRTDGQTLTRDEMGREVEAIVRAVAIPVNADIEAGYGHAPEDVRRTVEHFAA  103 (275)
T ss_dssp             SHH-HHHHHHHHTCSCEEECHHHHHHHSCCCSSSSSCHHHHHHHHHHHHHHCSSCEEEECTTCSSSSHHHHHHHHHHHHH
T ss_pred             CHH-HHHHHHHcCCCEEEECcHHHHHhCCCCCCCCCCHHHHHHHHHHHHhhcCCCEEeecCCCCCCCHHHHHHHHHHHHH
Confidence            565 7888888899887776421     11    1123333    333345778998863      23 22 66889999


Q ss_pred             cCCCEEEe-CCeeecCCC-CCH-HHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcc----e---ecccCHHHHHHHH
Q 021156          153 EGATHVIV-TSYVFNNGQ-MDL-ERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQ----K---FSDVYLDERVLDF  222 (316)
Q Consensus       153 ~Gad~VVi-gt~~~~~~~-~~~-eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~----~---~~~~~~~e~a~~~  222 (316)
                      +||.-|-| |.......+ .+. +.++++....- .+-...+|++.     .-++....    +   ..-...++.++.+
T Consensus       104 aGaagv~iED~~~~~~k~l~~~~e~~~~I~aa~~-a~~~~g~~~~i-----~aRtda~~~~~g~~~~~~~~~ai~Ra~ay  177 (275)
T 2ze3_A          104 LGVAGVNLEDATGLTPTELYDLDSQLRRIEAARA-AIDASGVPVFL-----NARTDTFLKGHGATDEERLAETVRRGQAY  177 (275)
T ss_dssp             TTCSEEEEECBCSSSSSCBCCHHHHHHHHHHHHH-HHHHHTSCCEE-----EEECCTTTTTCSSSHHHHHHHHHHHHHHH
T ss_pred             cCCcEEEECCCcCCCCCccCCHHHHHHHHHHHHH-hHhhcCCCeEE-----EEechhhhccccccchhhHHHHHHHHHHH
Confidence            99999887 332111111 112 33333332210 00000122221     11122110    0   0112577889999


Q ss_pred             HHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          223 LASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       223 ~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      .+.|++.+++..+        ++.+.++++.+.+++|+-+..+ ...-...+|.++|  +.-|+.|.++
T Consensus       178 ~eAGAd~i~~e~~--------~~~~~~~~i~~~~~~P~n~~~~-~~~~~~~eL~~lG--v~~v~~~~~~  235 (275)
T 2ze3_A          178 ADAGADGIFVPLA--------LQSQDIRALADALRVPLNVMAF-PGSPVPRALLDAG--AARVSFGQSL  235 (275)
T ss_dssp             HHTTCSEEECTTC--------CCHHHHHHHHHHCSSCEEEECC-TTSCCHHHHHHTT--CSEEECTTHH
T ss_pred             HHCCCCEEEECCC--------CCHHHHHHHHHhcCCCEEEecC-CCCCCHHHHHHcC--CcEEEEChHH
Confidence            9999998876543        5678999999988999877644 2233467888898  8889999877

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	316
d1h5ya_	252	c.1.2.1 (A:) Cyclase subunit (or domain) of imidaz	5e-29
d1thfd_	253	c.1.2.1 (D:) Cyclase subunit (or domain) of imidaz	2e-22
d1ka9f_	251	c.1.2.1 (F:) Cyclase subunit (or domain) of imidaz	2e-21
d1vzwa1	239	c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoi	8e-13
d1qo2a_	241	c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidaz	2e-11
d1jvna1	323	c.1.2.1 (A:230-552) Cyclase subunit (or domain) of	9e-09

>d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 252

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score =  109 bits (274), Expect = 5e-29
 Identities = 53/244 (21%), Positives = 91/244 (37%), Gaps = 22/244 (9%)

Query: 53  AVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHA 112
           A+R  PC+DI  G    + G   Q  ++ G              E A  Y+E+G      
Sbjct: 3   ALRIIPCLDIDGGAKVVVKGVNFQGIREVG-----------DPVEMAVRYEEEGADEIAI 51

Query: 113 IMLGADPLSKAAAIEALHA-----YPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNN 167
           + + A P  +A  I+++           L  GG  + +++ +    GA  V V +    N
Sbjct: 52  LDITAAPEGRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSVNTAAVRN 111

Query: 168 GQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYA 227
            Q+       L R  G Q  V+ +  +     Y +     ++ + +   +   +     A
Sbjct: 112 PQLV----ALLAREFGSQSTVVAIDAKWNGEYYEVYVKGGREATGLDAVKWAKEVEELGA 167

Query: 228 DEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTV 287
            E L+  +D +G  LG D EL+  +     IPV  +GG   +    +   AG     V  
Sbjct: 168 GEILLTSIDRDGTGLGYDVELIRRVADSVRIPVIASGGAGRVEHFYEAAAAGAD--AVLA 225

Query: 288 GSAL 291
            S  
Sbjct: 226 ASLF 229

>d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} Length = 253

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

 Score = 91.8 bits (227), Expect = 2e-22
 Identities = 48/243 (19%), Positives = 92/243 (37%), Gaps = 26/243 (10%)

Query: 55  RFRPCIDIHKGK-VKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAI 113
           R   C+D+  G+ VK      L+DS D                E    Y E G+     +
Sbjct: 5   RIIACLDVKDGRVVKGSNFENLRDSGD--------------PVELGKFYSEIGIDELVFL 50

Query: 114 MLGADPLSKAAAIEALHAYPG-----GLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNG 168
            + A    +   +E +              GG  + + +   I  GA  V + +    N 
Sbjct: 51  DITASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINTAAVENP 110

Query: 169 QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYAD 228
                 +  + +  G Q +V+ +  ++ DG++ + T   +K + + L + V++     A 
Sbjct: 111 ----SLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAG 166

Query: 229 EFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVG 288
           E L+  +D +G K G D E++  +   + +P+  +GG   M    +  +AG         
Sbjct: 167 EILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGA--DAALAA 224

Query: 289 SAL 291
           S  
Sbjct: 225 SVF 227

>d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} Length = 251

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

 Score = 89.0 bits (220), Expect = 2e-21
 Identities = 53/240 (22%), Positives = 92/240 (38%), Gaps = 26/240 (10%)

Query: 58  PCIDIHKGK-VKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLG 116
           PC+D+H G+ VK +    L+D+ D                E A  Y E G      + + 
Sbjct: 8   PCLDVHAGRVVKGVNFVNLRDAGD--------------PVEAARAYDEAGADELVFLDIS 53

Query: 117 ADPLSKAAAIEALH----AYPGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFNNGQMD 171
           A    +A  ++ +          L VGGG+ S +++   +  GA  V V S         
Sbjct: 54  ATHEERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAVRRP--- 110

Query: 172 LERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFL 231
            E +++L    G Q +VL +  R +     +     +  + ++  E  +  +   A E L
Sbjct: 111 -ELIRELADHFGAQAVVLAIDARWRGDFPEVHVAGGRVPTGLHAVEWAVKGVELGAGEIL 169

Query: 232 VHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL 291
           +  +D +G K G D  L  ++ +   +PV  +GG   M    +   AG         S  
Sbjct: 170 LTSMDRDGTKEGYDLRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQAGA--EAALAASVF 227

>d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]} Length = 239

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA
species: Streptomyces coelicolor [TaxId: 1902]

 Score = 65.0 bits (157), Expect = 8e-13
 Identities = 42/241 (17%), Positives = 81/241 (33%), Gaps = 24/241 (9%)

Query: 55  RFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAI- 113
              P +D+  G+  ++V        + GT+         S  E A  ++  G    H + 
Sbjct: 4   ELLPAVDVRDGQAVRLVHG------ESGTETSYG-----SPLEAALAWQRSGAEWLHLVD 52

Query: 114 --MLGADPLSKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMD 171
                    ++A   E   A    +++ GGI  D++L+         +            
Sbjct: 53  LDAAFGTGDNRALIAEVAQAMDIKVELSGGIRDDDTLAAALATGCTRVNLGTAALETPEW 112

Query: 172 LERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFL 231
           + ++       G +           D +   +  R        L E +          ++
Sbjct: 113 VAKVI---AEHGDK------IAVGLDVRGTTLRGRGWTRDGGDLYETLDRLNKEGCARYV 163

Query: 232 VHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVD-VTVGSA 290
           V  +  +G   G + EL+  +   +  PV  +GGV+++ DL  I       V+   VG A
Sbjct: 164 VTDIAKDGTLQGPNLELLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKA 223

Query: 291 L 291
           L
Sbjct: 224 L 224

>d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]} Length = 241

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA
species: Thermotoga maritima [TaxId: 2336]

 Score = 60.8 bits (146), Expect = 2e-11
 Identities = 45/258 (17%), Positives = 84/258 (32%), Gaps = 32/258 (12%)

Query: 58  PCIDIHKGKVKQIV-GSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLG 116
           P ID+ +GKV +++ G        +               E      E+G T  H + L 
Sbjct: 5   PAIDLFRGKVARMIKGRKENTIFYEK-----------DPVELVEKLIEEGFTLIHVVDLS 53

Query: 117 ADPLSKA---AAIEALHAYPGGLQVGGGINSD-NSLSYIEEGATHVIVTSYVFNNGQMDL 172
               +       +E L  +   +Q+GGGI S   +    + G    IV+S V  +     
Sbjct: 54  NAIENSGENLPVLEKLSEFAEHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLEDPSFLK 113

Query: 173 ERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLV 232
              +  V  V                   +    W    ++     +        +E + 
Sbjct: 114 SLREIDVEPV----------FSLDTRGGRVAFKGWLAEEEIDPVSLLKRLKEYGLEEIVH 163

Query: 233 HGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGI---GRVD-VTVG 288
             ++ +G     D  L   +   + + V  AGG+++   L+  +       G +  V VG
Sbjct: 164 TEIEKDGTLQEHDFSLTKKIAIEAEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVG 223

Query: 289 SALDIFGGNLAYKDVVAW 306
            A     G L  + +  +
Sbjct: 224 RAF--LEGILTVEVMKRY 239

>d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} Length = 323

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]

 Score = 53.6 bits (128), Expect = 9e-09
 Identities = 48/299 (16%), Positives = 82/299 (27%), Gaps = 69/299 (23%)

Query: 53  AVRFRPCIDIHKGK------VKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDG 106
             R   C+D+           K       + S   G + +          + A  Y + G
Sbjct: 8   TRRIIACLDVRTNDQGDLVVTKGDQYDVREKSDGKGVRNLGK------PVQLAQKYYQQG 61

Query: 107 --------LTGGHAIMLGADPLSKAAAIEALHAYPGGLQVGGGINSDNSLS--------- 149
                   +T      L   P+ +     A       L VGGGI     +          
Sbjct: 62  ADEVTFLNITSFRDCPLKDTPMLEVLKQ-AAKTVFVPLTVGGGIKDIVDVDGTKIPALEV 120

Query: 150 ---YIEEGATHVIVTSYVFNNGQMDLERLK---------DLVRVVGKQRLVLDLSCRK-- 195
              Y   GA  V + +      +   E             + +  G Q +V+ +  ++  
Sbjct: 121 ASLYFRSGADKVSIGTDAVYAAEKYYELGNRGDGTSPIETISKAYGAQAVVISVDPKRVY 180

Query: 196 ----------------------KDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVH 233
                                 K   Y       ++  D+ + E      A  A E L++
Sbjct: 181 VNSQADTKNKVFETEYPGPNGEKYCWYQCTIKGGRESRDLGVWELTRACEALGAGEILLN 240

Query: 234 GVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVD-VTVGSAL 291
            +D +G   G D EL+  +     IPV  + G       E+  +    R D        
Sbjct: 241 CIDKDGSNSGYDLELIEHVKDAVKIPVIASSGAGVPEHFEEAFL--KTRADACLGAGMF 297

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	316
d1h5ya_	252	Cyclase subunit (or domain) of imidazoleglycerolph	100.0
d1thfd_	253	Cyclase subunit (or domain) of imidazoleglycerolph	100.0
d1ka9f_	251	Cyclase subunit (or domain) of imidazoleglycerolph	100.0
d1qo2a_	241	Phosphoribosylformimino-5-aminoimidazole carboxami	100.0
d1jvna1	323	Cyclase subunit (or domain) of imidazoleglycerolph	100.0
d1vzwa1	239	Phosphoribosylformimino-5-aminoimidazole carboxami	100.0
d1vhna_	305	Putative flavin oxidoreducatase TM0096 {Thermotoga	99.54
d1thfd_	253	Cyclase subunit (or domain) of imidazoleglycerolph	99.26
d1ka9f_	251	Cyclase subunit (or domain) of imidazoleglycerolph	99.25
d1h5ya_	252	Cyclase subunit (or domain) of imidazoleglycerolph	99.18
d1vzwa1	239	Phosphoribosylformimino-5-aminoimidazole carboxami	99.17
d1y0ea_	222	Putative N-acetylmannosamine-6-phosphate 2-epimera	99.12
d1yxya1	230	Putative N-acetylmannosamine-6-phosphate 2-epimera	98.97
d1jvna1	323	Cyclase subunit (or domain) of imidazoleglycerolph	98.96
d1qo2a_	241	Phosphoribosylformimino-5-aminoimidazole carboxami	98.95
d1a53a_	247	Indole-3-glycerophosphate synthase, IPGS {Archaeon	98.68
d1vc4a_	254	Indole-3-glycerophosphate synthase, IPGS {Thermus	98.67
d1gtea2	312	Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su	98.54
d1vrda1	330	Inosine monophosphate dehydrogenase (IMPDH) {Therm	98.52
d1ep3a_	311	Dihydroorotate dehydrogenase {Lactococcus lactis,	98.49
d2flia1	217	D-ribulose-5-phosphate 3-epimerase {Streptococcus	98.29
d1zfja1	365	Inosine monophosphate dehydrogenase (IMPDH) {Strep	98.25
d1xi3a_	206	Thiamin phosphate synthase {Archaeon (Pyrococcus f	98.2
d1i4na_	251	Indole-3-glycerophosphate synthase, IPGS {Thermoto	98.2
d1wa3a1	202	KDPG aldolase {Thermotoga maritima [TaxId: 2336]}	98.19
d1ps9a1	330	2,4-dienoyl-CoA reductase, N-terminal domain {Esch	98.12
d2tpsa_	226	Thiamin phosphate synthase {Bacillus subtilis [Tax	98.1
d1h1ya_	220	D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa	98.06
d1piia2	254	Indole-3-glycerophosphate synthase, IPGS {Escheric	98.05
d1z41a1	337	NADPH dehydrogenase NamA {Bacillus subtilis [TaxId	98.03
d1hg3a_	224	Triosephosphate isomerase {Archaeon Pyrococcus woe	97.98
d1geqa_	248	Trp synthase alpha-subunit {Archaeon Pyrococcus fu	97.97
d1qopa_	267	Trp synthase alpha-subunit {Salmonella typhimurium	97.96
d1xm3a_	251	Thiazole biosynthesis protein ThiG {Bacillus subti	97.92
d1wv2a_	243	Thiazole biosynthesis protein ThiG {Pseudomonas ae	97.92
d1djqa1	340	Trimethylamine dehydrogenase, N-terminal domain {M	97.9
d1pvna1	362	Inosine monophosphate dehydrogenase (IMPDH) {Tritr	97.88
d1rd5a_	261	Trp synthase alpha-subunit {Maize (Zea mays) [TaxI	97.86
d1eepa_	388	Inosine monophosphate dehydrogenase (IMPDH) {Lyme	97.85
d1w0ma_	226	Triosephosphate isomerase {Thermoproteus tenax [Ta	97.83
d1rpxa_	230	D-ribulose-5-phosphate 3-epimerase {Potato (Solanu	97.82
d1jr1a1	378	Inosine monophosphate dehydrogenase (IMPDH) {Chine	97.77
d1juba_	311	Dihydroorotate dehydrogenase {Lactococcus lactis,	97.73
d1y0ea_	222	Putative N-acetylmannosamine-6-phosphate 2-epimera	97.69
d1twda_	247	Copper homeostasis protein CutC {Shigella flexneri	97.64
d1tv5a1	409	Dihydroorotate dehydrogenase {Plasmodium falciparu	97.55
d1tqja_	221	D-ribulose-5-phosphate 3-epimerase {Synechocystis	97.53
d1gwja_	374	Morphinone reductase {Pseudomonas putida [TaxId: 3	97.45
d1yxya1	230	Putative N-acetylmannosamine-6-phosphate 2-epimera	97.45
d1vhca_	212	Hypothetical protein HI0047 {Haemophilus influenza	97.44
d1viza_	229	PcrB protein homolog YerE {Bacillus subtilis [TaxI	97.43
d1wbha1	213	KDPG aldolase {Escherichia coli [TaxId: 562]}	97.38
d1viza_	229	PcrB protein homolog YerE {Bacillus subtilis [TaxI	97.38
d1f76a_	336	Dihydroorotate dehydrogenase {Escherichia coli [Ta	97.35
d1ujpa_	271	Trp synthase alpha-subunit {Thermus thermophilus [	97.27
d1tqxa_	221	D-ribulose-5-phosphate 3-epimerase {Plasmodium fal	97.24
d2cu0a1	368	Inosine monophosphate dehydrogenase (IMPDH) {Pyroc	97.16
d1d3ga_	367	Dihydroorotate dehydrogenase {Human (Homo sapiens)	97.15
d1icpa_	364	12-oxophytodienoate reductase (OPR, OYE homolog) {	97.12
d2f6ua1	231	(S)-3-O-geranylgeranylglyceryl phosphate synthase	97.12
d1q6oa_	213	3-keto-L-gulonate 6-phosphate decarboxylase {Esche	97.08
d2f6ua1	231	(S)-3-O-geranylgeranylglyceryl phosphate synthase	97.07
d1znna1	254	Pyridoxal biosynthesis lyase PdxS {Bacillus stearo	97.05
d1vyra_	363	Pentaerythritol tetranirate reductase {Enterobacte	96.93
d1rd5a_	261	Trp synthase alpha-subunit {Maize (Zea mays) [TaxI	96.88
d1xm3a_	251	Thiazole biosynthesis protein ThiG {Bacillus subti	96.83
d1ep3a_	311	Dihydroorotate dehydrogenase {Lactococcus lactis,	96.81
d1v5xa_	200	N-(5'phosphoribosyl)antranilate isomerase, PRAI {T	96.8
d1geqa_	248	Trp synthase alpha-subunit {Archaeon Pyrococcus fu	96.76
d1qopa_	267	Trp synthase alpha-subunit {Salmonella typhimurium	96.75
d1mxsa_	216	KDPG aldolase {Pseudomonas putida [TaxId: 303]}	96.75
d1nu5a1	243	Chlormuconate cycloisomerase {Pseudomonas sp. p51	96.75
d1gtea2	312	Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su	96.68
d1jpma1	234	L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId:	96.64
d1tb3a1	349	Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI	96.59
d1wv2a_	243	Thiazole biosynthesis protein ThiG {Pseudomonas ae	96.59
d1tzza1	247	Hypothetical protein Bll6730 {Bradyrhizobium japon	96.53
d1p4ca_	353	Membrane-associated (S)-mandelate dehydrogenase {P	96.52
d1piia1	198	N-(5'phosphoribosyl)antranilate isomerase, PRAI {E	96.48
d2flia1	217	D-ribulose-5-phosphate 3-epimerase {Streptococcus	96.47
d1p0ka_	329	Isopentenyl-diphosphate delta-isomerase {Bacillus	96.46
d1muca1	242	Muconate-lactonizing enzyme {Pseudomonas putida [T	96.45
d2mnra1	227	Mandelate racemase {Pseudomonas putida [TaxId: 303	96.44
d2b4ga1	312	Dihydroorotate dehydrogenase {Trypanosoma brucei [	96.34
d1h1ya_	220	D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa	96.3
d2chra1	244	Chlormuconate cycloisomerase {Alcaligenes eutrophu	96.3
d1vcfa1	310	Isopentenyl-diphosphate delta-isomerase {Thermus t	96.26
d1goxa_	359	Glycolate oxidase {Spinach (Spinacia oleracea) [Ta	96.21
d1tqja_	221	D-ribulose-5-phosphate 3-epimerase {Synechocystis	96.04
d1sjda1	242	N-acylamino acid racemase {Amycolatopsis sp. [TaxI	96.03
d1tqxa_	221	D-ribulose-5-phosphate 3-epimerase {Plasmodium fal	95.9
d1kbia1	414	Flavocytochrome b2, C-terminal domain {Baker's yea	95.85
d1rpxa_	230	D-ribulose-5-phosphate 3-epimerase {Potato (Solanu	95.85
d1vyra_	363	Pentaerythritol tetranirate reductase {Enterobacte	95.73
d1nsja_	205	N-(5'phosphoribosyl)antranilate isomerase, PRAI {T	95.64
d1rvka1	255	Hypothetical protein Atu3453 {Agrobacterium tumefa	95.59
d1z41a1	337	NADPH dehydrogenase NamA {Bacillus subtilis [TaxId	95.45
d1yeya1	252	RTS beta protein {Xanthomonas campestris pv. campe	95.36
d1wufa1	244	N-acylamino acid racemase {Listeria innocua [TaxId	95.32
d1gvfa_	284	Tagatose-1,6-bisphosphate aldolase {Escherichia co	95.28
d1ps9a1	330	2,4-dienoyl-CoA reductase, N-terminal domain {Esch	94.89
d1juba_	311	Dihydroorotate dehydrogenase {Lactococcus lactis,	94.88
d1oyaa_	399	Old yellow enzyme (OYE) {Lager yeast (Saccharomyce	94.87
d2gl5a1	278	Putative dehydratase protein STM2273 {Salmonella t	94.86
d1ub3a_	211	Deoxyribose-phosphate aldolase DeoC {Thermus therm	94.84
d1qapa1	167	Quinolinic acid phosphoribosyltransferase (Nicotin	94.8
d1rvga_	305	Fructose-bisphosphate aldolase (FBP aldolase) {The	94.8
d1ujpa_	271	Trp synthase alpha-subunit {Thermus thermophilus [	94.75
d1d3ga_	367	Dihydroorotate dehydrogenase {Human (Homo sapiens)	94.74
d1mzha_	225	Deoxyribose-phosphate aldolase DeoC {Aquifex aeoli	94.62
d1twda_	247	Copper homeostasis protein CutC {Shigella flexneri	94.61
d1vrda1	330	Inosine monophosphate dehydrogenase (IMPDH) {Therm	94.5
d1ccwa_	137	Glutamate mutase, small subunit {Clostridium cochl	94.4
d1to3a_	291	Putative aldolase YihT {Salmonella typhimurium [Ta	94.38
d1vcfa1	310	Isopentenyl-diphosphate delta-isomerase {Thermus t	94.31
d1o0ya_	251	Deoxyribose-phosphate aldolase DeoC {Thermotoga ma	94.3
d2gdqa1	256	Hypothetical protein YitF {Bacillus subtilis [TaxI	94.27
d1f76a_	336	Dihydroorotate dehydrogenase {Escherichia coli [Ta	94.26
d1hg3a_	224	Triosephosphate isomerase {Archaeon Pyrococcus woe	94.14
d1jr1a1	378	Inosine monophosphate dehydrogenase (IMPDH) {Chine	94.06
d1zfja1	365	Inosine monophosphate dehydrogenase (IMPDH) {Strep	94.02
d1ojxa_	251	Archaeal fructose 1,6-bisphosphate aldolase {Archa	93.85
d1p0ka_	329	Isopentenyl-diphosphate delta-isomerase {Bacillus	93.78
d1wuea1	241	N-acylamino acid racemase {Enterococcus faecalis [	93.63
d1ls1a2	207	GTPase domain of the signal sequence recognition p	93.61
d1q6oa_	213	3-keto-L-gulonate 6-phosphate decarboxylase {Esche	93.59
d1r0ma1	243	N-acylamino acid racemase {Deinococcus radiodurans	93.48
d1q45a_	380	12-oxophytodienoate reductase (OPR, OYE homolog) {	93.44
d1w0ma_	226	Triosephosphate isomerase {Thermoproteus tenax [Ta	93.42
d1vc4a_	254	Indole-3-glycerophosphate synthase, IPGS {Thermus	93.24
d1djqa1	340	Trimethylamine dehydrogenase, N-terminal domain {M	92.96
d1pvna1	362	Inosine monophosphate dehydrogenase (IMPDH) {Tritr	92.89
d1s2wa_	275	Phosphoenolpyruvate mutase {Blue mussel (Mytilus e	92.6
d1wa3a1	202	KDPG aldolase {Thermotoga maritima [TaxId: 2336]}	92.59
d1tv5a1	409	Dihydroorotate dehydrogenase {Plasmodium falciparu	92.41
d1vhna_	305	Putative flavin oxidoreducatase TM0096 {Thermotoga	91.94
d1km4a_	212	Orotidine 5'-monophosphate decarboxylase (OMP deca	91.9
d1n7ka_	234	Deoxyribose-phosphate aldolase DeoC {Archaeon Aero	91.85
d1eepa_	388	Inosine monophosphate dehydrogenase (IMPDH) {Lyme	91.82
d1o0ya_	251	Deoxyribose-phosphate aldolase DeoC {Thermotoga ma	91.76
d1xhfa1	121	Aerobic respiration control protein ArcA, N-termin	91.66
d1xi3a_	206	Thiamin phosphate synthase {Archaeon (Pyrococcus f	91.62
d1gwja_	374	Morphinone reductase {Pseudomonas putida [TaxId: 3	91.5
d1ea0a2	771	Alpha subunit of glutamate synthase, central and F	91.42
d2b4ga1	312	Dihydroorotate dehydrogenase {Trypanosoma brucei [	91.14
d1muma_	289	2-methylisocitrate lyase {Escherichia coli [TaxId:	90.97
d1eixa_	231	Orotidine 5'-monophosphate decarboxylase (OMP deca	90.97
d1tb3a1	349	Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI	90.95
d1qpoa1	169	Quinolinic acid phosphoribosyltransferase (Nicotin	90.68
d1goxa_	359	Glycolate oxidase {Spinach (Spinacia oleracea) [Ta	90.65
d1mzha_	225	Deoxyribose-phosphate aldolase DeoC {Aquifex aeoli	90.6
d2a9pa1	117	DNA-binding response regulator MicA, N-terminal do	90.54
d1qpoa1	169	Quinolinic acid phosphoribosyltransferase (Nicotin	90.53
d1p4ca_	353	Membrane-associated (S)-mandelate dehydrogenase {P	90.4
d2cu0a1	368	Inosine monophosphate dehydrogenase (IMPDH) {Pyroc	90.09
d1o4ua1	170	Quinolinic acid phosphoribosyltransferase (Nicotin	89.97
d1o5xa_	246	Triosephosphate isomerase {Plasmodium falciparum [	89.93
d1xkya1	292	Dihydrodipicolinate synthase {Bacillus anthracis [	89.79
d2qy9a2	211	GTPase domain of the signal recognition particle r	89.77
d1icpa_	364	12-oxophytodienoate reductase (OPR, OYE homolog) {	89.75
d2btma_	251	Triosephosphate isomerase {Bacillus stearothermoph	89.18
d1peya_	119	Sporulation response regulator Spo0F {Bacillus sub	88.23
d1n7ka_	234	Deoxyribose-phosphate aldolase DeoC {Archaeon Aero	87.82
d7reqa2	168	Methylmalonyl-CoA mutase alpha subunit, C-terminal	87.58
d1vhca_	212	Hypothetical protein HI0047 {Haemophilus influenza	87.55
d1n55a_	249	Triosephosphate isomerase {Leishmania mexicana [Ta	87.4
d1znna1	254	Pyridoxal biosynthesis lyase PdxS {Bacillus stearo	87.25
d1vr6a1	338	3-deoxy-D-arabino-heptulosonate-7-phosphate syntha	87.2
d1q45a_	380	12-oxophytodienoate reductase (OPR, OYE homolog) {	87.13
d1kv5a_	249	Triosephosphate isomerase {Trypanosoma brucei [Tax	86.81
d1ofda2	809	Alpha subunit of glutamate synthase, central and F	86.55
d1xxxa1	296	Dihydrodipicolinate synthase {Mycobacterium tuberc	86.36
d1a53a_	247	Indole-3-glycerophosphate synthase, IPGS {Archaeon	86.03
d1ad1a_	264	Dihydropteroate synthetase {Staphylococcus aureus	85.82
d2tpsa_	226	Thiamin phosphate synthase {Bacillus subtilis [Tax	85.75
d1jpdx1	208	L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId:	85.68
d1izca_	299	Macrophomate synthase {Macrophoma commelinae [TaxI	85.58
d1xkya1	292	Dihydrodipicolinate synthase {Bacillus anthracis [	85.23
d1o5ka_	295	Dihydrodipicolinate synthase {Thermotoga maritima	85.2
d1krwa_	123	NTRC receiver domain {Salmonella typhimurium [TaxI	85.05
d2a6na1	292	Dihydrodipicolinate synthase {Escherichia coli [Ta	84.95
d1neya_	247	Triosephosphate isomerase {Baker's yeast (Saccharo	84.47
d2pl1a1	119	PhoP receiver domain {Escherichia coli [TaxId: 562	84.42
d1ub3a_	211	Deoxyribose-phosphate aldolase DeoC {Thermus therm	84.3
d1zgza1	120	TorCAD operon transcriptional regulator TorD, N-te	84.22
d1mo0a_	257	Triosephosphate isomerase {Nematode (Caenorhabditi	84.2
d1dbwa_	123	Transcriptional regulatory protein FixJ, receiver	83.8
d1zh2a1	119	Transcriptional regulatory protein KdpE, N-termina	83.17
d1qapa1	167	Quinolinic acid phosphoribosyltransferase (Nicotin	83.05
d1xxxa1	296	Dihydrodipicolinate synthase {Mycobacterium tuberc	82.82
d1okkd2	207	GTPase domain of the signal recognition particle r	82.77
d2czda1	206	Orotidine 5'-monophosphate decarboxylase (OMP deca	82.68
d1r2ra_	246	Triosephosphate isomerase {Rabbit (Oryctolagus cun	82.23
d1w25a1	139	Response regulator PleD, receiver domain {Caulobac	82.15
d1trea_	255	Triosephosphate isomerase {Escherichia coli [TaxId	81.54
d1k68a_	140	Response regulator for cyanobacterial phytochrome	81.43
d1dxea_	253	2-dehydro-3-deoxy-galactarate aldolase {Escherichi	80.94
d1p6qa_	129	CheY protein {Sinorhizobium meliloti, CheY2 [TaxId	80.7
d1b9ba_	252	Triosephosphate isomerase {Thermotoga maritima [Ta	80.56
d1o5ka_	295	Dihydrodipicolinate synthase {Thermotoga maritima	80.46
d1j8yf2	211	GTPase domain of the signal sequence recognition p	80.32
d1kbia1	414	Flavocytochrome b2, C-terminal domain {Baker's yea	80.26

>d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=100.00  E-value=1.1e-50  Score=369.97  Aligned_cols=241  Identities=22%  Similarity=0.291  Sum_probs=218.7

Q ss_pred             cccEEEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCCcc----cHHHHHH
Q 021156           52 CAVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADPL----SKAAAIE  127 (316)
Q Consensus        52 ~~~~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~~~----~~~~i~~  127 (316)
                      ++|||||||||++|+||++++++|+        ..+.+   +||+++|+.|.+.|++++|++||+++..    +...+.+
T Consensus         2 ~~MrIIP~IDi~~g~vv~~kg~~~~--------~~~~~---~dP~~~a~~~~~~gadei~ivDl~~~~~~~~~~~~~i~~   70 (252)
T d1h5ya_           2 MALRIIPCLDIDGGAKVVVKGVNFQ--------GIREV---GDPVEMAVRYEEEGADEIAILDITAAPEGRATFIDSVKR   70 (252)
T ss_dssp             CBCEEEEEEEECGGGCEECTTCCCH--------HHHEE---ECHHHHHHHHHHTTCSCEEEEECCCCTTTHHHHHHHHHH
T ss_pred             CcEEEEEEEEEECCEEEEEEeecCc--------ceEEC---CCHHHHHHHHHHCCCCEEEEEeccccccccccHHHHHHH
Confidence            6899999999999999987666543        11222   6899999999999999999999998842    2334455


Q ss_pred             HHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCC
Q 021156          128 ALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDR  206 (316)
Q Consensus       128 ~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~g  206 (316)
                      +.+.+.+|+++||||| .+++++++++||++|++||..+++    |++++++++.||+|++++++|++.++++|.+++++
T Consensus        71 i~~~~~~pi~~gGGIr~~e~~~~ll~~G~~kVii~s~~~~~----~~~~~~~~~~~G~q~iv~slD~~~~~~~~~v~~~~  146 (252)
T d1h5ya_          71 VAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSVNTAAVRN----PQLVALLAREFGSQSTVVAIDAKWNGEYYEVYVKG  146 (252)
T ss_dssp             HHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHC----THHHHHHHHHHCGGGEEEEEEEEECSSSEEEEETT
T ss_pred             HHhhcCCcceeecccchhhhhhhHhhcCCcEEEecccccCC----cchHHHHHHhcCCCcEEEEEEEEEcCCcEEEEEeC
Confidence            5567899999999999 599999999999999999999998    99999999999999999999998765568999999


Q ss_pred             cceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEE
Q 021156          207 WQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVT  286 (316)
Q Consensus       207 w~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVi  286 (316)
                      |++.+++++.++++++.+.|++++++|++++||+++|+|+++++++++.+++|++++||+++.+|+.++.+.|  ++||+
T Consensus       147 ~~~~~~~~~~~~~~~~~~~g~~eii~tdI~~dG~~~G~d~~~~~~i~~~~~~pii~~GGv~~~~di~~l~~~g--~~gv~  224 (252)
T d1h5ya_         147 GREATGLDAVKWAKEVEELGAGEILLTSIDRDGTGLGYDVELIRRVADSVRIPVIASGGAGRVEHFYEAAAAG--ADAVL  224 (252)
T ss_dssp             TTEEEEEEHHHHHHHHHHHTCSEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTT--CSEEE
T ss_pred             CeEcCCCCHHHHHHHHHhcCCCEEEEEeecccCccCCcCHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHCC--CCEEE
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999988  99999


Q ss_pred             EccchhhccCcccHHHHHHHHHhhc
Q 021156          287 VGSALDIFGGNLAYKDVVAWHAQQE  311 (316)
Q Consensus       287 vG~Al~~~~g~~~~~~~~~~~~~~~  311 (316)
                      +|+++  |.+.++++++++++++++
T Consensus       225 ~gs~l--~~~~~~~~~lk~~l~~~~  247 (252)
T d1h5ya_         225 AASLF--HFRVLSIAQVKRYLKERG  247 (252)
T ss_dssp             ESHHH--HTTSSCHHHHHHHHHHTT
T ss_pred             EhhHH--HcCCCCHHHHHHHHHHcC
Confidence            99999  999999999999998875

>d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=4.2e-49  Score=359.57  Aligned_cols=240  Identities=19%  Similarity=0.318  Sum_probs=216.6

Q ss_pred             ccccEEEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCCc----ccHHHHH
Q 021156           51 RCAVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADP----LSKAAAI  126 (316)
Q Consensus        51 ~~~~~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~~----~~~~~i~  126 (316)
                      +++.||||+|||++|+|||..+++  +         +.|  .+||+++|+.|.+.|++++|++|||++.    .+...+.
T Consensus         1 Ml~kRIIP~Idi~~g~~Vk~~~~~--~---------~~~--~gdP~~~a~~~~~~g~dei~ivDld~~~~~~~~~~~~i~   67 (253)
T d1thfd_           1 MLAKRIIACLDVKDGRVVKGSNFE--N---------LRD--SGDPVELGKFYSEIGIDELVFLDITASVEKRKTMLELVE   67 (253)
T ss_dssp             CCCCEEEEEEEEETTEECCCSCCT--T---------SSC--TTCHHHHHHHHHHTTCCEEEEEESSCSSSHHHHHHHHHH
T ss_pred             CCCCceEEEEEEECCEEEECCCCc--e---------eEE--CCCHHHHHHHHHHcCCCEEEEEeecccccCcccHHHHHH
Confidence            357799999999999999854432  1         223  3689999999999999999999999873    2333344


Q ss_pred             HHHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeC
Q 021156          127 EALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTD  205 (316)
Q Consensus       127 ~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~  205 (316)
                      ++++..++|+++||||| .+++++++++||++||+||.+++|    |++++++++.||++++++++|++..++.+.+.+.
T Consensus        68 ~i~~~~~~pi~vgGGIr~~e~i~~~l~~Ga~kviigs~~~~n----~~~l~~~~~~~G~~~iv~~id~~~~~~~~~~~~~  143 (253)
T d1thfd_          68 KVAEQIDIPFTVGGGIHDFETASELILRGADKVSINTAAVEN----PSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTY  143 (253)
T ss_dssp             HHHTTCCSCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHHC----THHHHHHHHHHCGGGEEEEEEEEEETTEEEEEET
T ss_pred             HHHhccCccceeecccccchhhhhHHhcCCCEEEEChHHhhC----hHHHHHHHHHcCCeeEEEeeeecccCCceeeeee
Confidence            45557899999999999 599999999999999999999998    9999999999999999999999876777899999


Q ss_pred             CcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEE
Q 021156          206 RWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDV  285 (316)
Q Consensus       206 gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gV  285 (316)
                      +|++.+..++.++++++.+.|++++++|++++|||++|+|+++++++++.+++|+|++||+++++|+.++++.|  +++|
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~g~~eii~tdI~~dGt~~G~d~~ll~~i~~~~~~pvi~~GGv~s~~di~~l~~~g--~~gv  221 (253)
T d1thfd_         144 SGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAG--ADAA  221 (253)
T ss_dssp             TTTEEEEEEHHHHHHHHHHTTCSEEEEEETTTTTSCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTT--CSEE
T ss_pred             ecccccchhHHHHHHHHHhccCCEEEEEEecccCccCCccccccccccccccceEEEecCCCCHHHHHHHHHCC--CCEE
Confidence            99998889999999999999999999999999999999999999999999999999999999999999999988  9999


Q ss_pred             EEccchhhccCcccHHHHHHHHHhhc
Q 021156          286 TVGSALDIFGGNLAYKDVVAWHAQQE  311 (316)
Q Consensus       286 ivG~Al~~~~g~~~~~~~~~~~~~~~  311 (316)
                      ++|+|+  |++.++++++++++++.+
T Consensus       222 ivgsal--~~~~~~~~~~k~~l~~~~  245 (253)
T d1thfd_         222 LAASVF--HFREIDVRELKEYLKKHG  245 (253)
T ss_dssp             EESHHH--HTTCSCHHHHHHHHHHTT
T ss_pred             EEchHH--HcCCCCHHHHHHHHHHCC
Confidence            999999  999999999999998865

>d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.4e-48  Score=355.72  Aligned_cols=239  Identities=22%  Similarity=0.249  Sum_probs=216.2

Q ss_pred             cccEEEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCCcc----cHHHHHH
Q 021156           52 CAVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADPL----SKAAAIE  127 (316)
Q Consensus        52 ~~~~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~~~----~~~~i~~  127 (316)
                      ++.||||+|||++|+|||.+++++           ..|  .+||+++|+.|.++|++++|++|||++..    +...+.+
T Consensus         2 l~kRIIP~IDi~~G~~Vk~~~~~~-----------~~~--~gdP~~~a~~~~~~g~dei~iiDl~~~~~~~~~~~~~i~~   68 (251)
T d1ka9f_           2 LAKRIVPCLDVHAGRVVKGVNFVN-----------LRD--AGDPVEAARAYDEAGADELVFLDISATHEERAILLDVVAR   68 (251)
T ss_dssp             CCBEEEEEEEEETTEETTCCCSSC-----------CSS--TTCHHHHHHHHHHHTCSCEEEEECCSSTTCHHHHHHHHHH
T ss_pred             CCCcEEEEEEEECCEEEECccCCc-----------eEE--CCCHHHHHHHHHHcCCCEEEEEecccccccchhHHHHHHH
Confidence            578999999999999999765532           122  36899999999999999999999998732    3333444


Q ss_pred             HHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCC
Q 021156          128 ALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDR  206 (316)
Q Consensus       128 ~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~g  206 (316)
                      +++.+++|+++||||| .+++++++++||++|++||.++++    |++++++++.||++++++++|++.+...+.+.+++
T Consensus        69 i~~~~~~pi~vgGGIrs~e~~~~ll~~Ga~kVii~s~~~~n----~~~i~~~~~~~G~q~iv~~id~~~~~~~~~~~~~~  144 (251)
T d1ka9f_          69 VAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAVRR----PELIRELADHFGAQAVVLAIDARWRGDFPEVHVAG  144 (251)
T ss_dssp             HHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHC----THHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETT
T ss_pred             HHhccCcchheeccccCHHHHHHHHHcCCCEEEECchhhhC----HHHHHHHHHhhcccccccccchhhcccceEEEecc
Confidence            5556889999999999 599999999999999999999998    99999999999999999999998655557899999


Q ss_pred             cceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEE
Q 021156          207 WQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVT  286 (316)
Q Consensus       207 w~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVi  286 (316)
                      |++.+++++.++++.+.+.|++++++|++++|||++|+|+++++++.+.+++|+|++||+++.+|+.++++.|  ++||+
T Consensus       145 ~~~~~~~~~~~~~~~~~~~g~~eii~tdi~~dG~~~G~d~~l~~~i~~~~~~pii~~GGv~~~~dl~~l~~~g--~~gvi  222 (251)
T d1ka9f_         145 GRVPTGLHAVEWAVKGVELGAGEILLTSMDRDGTKEGYDLRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQAG--AEAAL  222 (251)
T ss_dssp             TTEEEEEEHHHHHHHHHHHTCCEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTT--CSEEE
T ss_pred             ceecCCccHHHHHHHHHhcCCCEEEEEeecccCccCCcchhHHHHHHhhcceeEEEecCCCCHHHHHHHHHCC--CCEEE
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999988  99999


Q ss_pred             EccchhhccCcccHHHHHHHHHhhc
Q 021156          287 VGSALDIFGGNLAYKDVVAWHAQQE  311 (316)
Q Consensus       287 vG~Al~~~~g~~~~~~~~~~~~~~~  311 (316)
                      +|+|+  |.|.++++++++++.+++
T Consensus       223 ig~al--~~g~~~~~~~k~~l~~~~  245 (251)
T d1ka9f_         223 AASVF--HFGEIPIPKLKRYLAEKG  245 (251)
T ss_dssp             ESHHH--HTTSSCHHHHHHHHHHTT
T ss_pred             EhHHH--HcCCCCHHHHHHHHHHCC
Confidence            99999  999999999999998865

>d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=7.7e-49  Score=355.37  Aligned_cols=233  Identities=21%  Similarity=0.284  Sum_probs=209.9

Q ss_pred             cEEEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCC---cccHHHHHHHHH
Q 021156           54 VRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGAD---PLSKAAAIEALH  130 (316)
Q Consensus        54 ~~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~---~~~~~~i~~~v~  130 (316)
                      |+|||||||++|+|||+++|+++        ..+.|  .+||+++|+.|.++|++++|++|||++   ..++..+++.++
T Consensus         1 M~iIP~iDl~~GkvVrl~~G~~~--------~~~~y--~~dP~~~a~~~~~~g~~~l~ivDLda~~~~~~~~~~~~~~~~   70 (241)
T d1qo2a_           1 MLVVPAIDLFRGKVARMIKGRKE--------NTIFY--EKDPVELVEKLIEEGFTLIHVVDLSNAIENSGENLPVLEKLS   70 (241)
T ss_dssp             CEEEEEEEEETTEEEEEGGGCGG--------GEEEE--SSCHHHHHHHHHHTTCCCEEEEEHHHHHHCCCTTHHHHHHGG
T ss_pred             CEEEEEEEEECCEEEEEeCcccC--------CceEE--CCCHHHHHHHHHHCCCCEEEEEecccccccCCcchhheehhc
Confidence            89999999999999999999764        33556  479999999999999999999999976   356677777777


Q ss_pred             hCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcce
Q 021156          131 AYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQK  209 (316)
Q Consensus       131 ~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~  209 (316)
                      +...|+++||||| .++++++++.||++|+++|+++++    |++++++.+ ++ +++++++|++  ++  .+.+++|++
T Consensus        71 ~~~~pl~~gGGI~s~~~~~~~~~~Ga~kVvi~s~~~~~----~~~~~~~~~-~~-~~~~v~iD~~--~~--~~~~~g~~~  140 (241)
T d1qo2a_          71 EFAEHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLED----PSFLKSLRE-ID-VEPVFSLDTR--GG--RVAFKGWLA  140 (241)
T ss_dssp             GGGGGEEEESSCCSHHHHHHHHHTTCCEEEECHHHHHC----TTHHHHHHT-TT-CEEEEEEEEE--TT--EECCTTCSS
T ss_pred             ccccchhhhhhhhhhhhhhhccccccceEecCcccccC----chhhhhhcc-cc-cceeeecccc--cc--cccccCccc
Confidence            7778999999999 599999999999999999999997    888877655 53 6788999998  55  789999999


Q ss_pred             ecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhC----CCcCEE
Q 021156          210 FSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAG----IGRVDV  285 (316)
Q Consensus       210 ~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G----~g~~gV  285 (316)
                      ....++.++++++.+.|++++++|++++|||++|+|+++++++.+.+++|+|++||+++.+|+.++++.|    .+++||
T Consensus       141 ~~~~~~~~~~~~~~~~g~~eii~~dId~dGt~~G~d~~l~~~i~~~~~~pvi~~GGv~s~~di~~l~~ig~~~~~~~~gv  220 (241)
T d1qo2a_         141 EEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQEHDFSLTKKIAIEAEVKVLAAGGISSENSLKTAQKVHTETNGLLKGV  220 (241)
T ss_dssp             CSCCCHHHHHHHHHTTTCCEEEEEETTHHHHTCCCCHHHHHHHHHHHTCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEE
T ss_pred             ceeeehhHHHHHhhccccceEEEeehhhhhhccccchhhhhhhhccCCceEEEECCCCCHHHHHHHHHccccccCCEeeE
Confidence            8889999999999999999999999999999999999999999988899999999999999999999864    258999


Q ss_pred             EEccchhhccCcccHHHHHHHHH
Q 021156          286 TVGSALDIFGGNLAYKDVVAWHA  308 (316)
Q Consensus       286 ivG~Al~~~~g~~~~~~~~~~~~  308 (316)
                      ++|+|+  |+|.++++++++|++
T Consensus       221 ivG~al--~~g~l~~~~~k~~l~  241 (241)
T d1qo2a_         221 IVGRAF--LEGILTVEVMKRYAR  241 (241)
T ss_dssp             EECHHH--HTTSSCHHHHHHHHC
T ss_pred             EEHHHH--HCCCCCHHHHHHHhC
Confidence            999999  999999999999874

>d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]

Probab=100.00  E-value=2.7e-48  Score=364.09  Aligned_cols=256  Identities=16%  Similarity=0.196  Sum_probs=206.6

Q ss_pred             cccccEEEEEEEeeCCeEEEE--Eccc-ccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCCc---cc--
Q 021156           50 VRCAVRFRPCIDIHKGKVKQI--VGST-LQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGADP---LS--  121 (316)
Q Consensus        50 ~~~~~~iIP~IDi~~G~vvr~--~~g~-~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~~---~~--  121 (316)
                      -.+++||||+||+++|+++++  ++|. |++..+.+   ...+-.-+||+++|+.|+++|++++|++||||..   .+  
T Consensus         5 ~~l~kRIIP~ldi~~g~~~~~~l~Kg~~f~~~~~~~---~~~~r~iGdP~~~a~~~~~~gaDeL~ivDidas~~~~~~~~   81 (323)
T d1jvna1           5 YGLTRRIIACLDVRTNDQGDLVVTKGDQYDVREKSD---GKGVRNLGKPVQLAQKYYQQGADEVTFLNITSFRDCPLKDT   81 (323)
T ss_dssp             GGCCCCEEEEEEEEECTTSCEESSTTC------------------CHHHHHHHHHHHHTTCSEEEEEEEC---CCCGGGC
T ss_pred             CCCCccEEEEEEEeCCccceEEEEcCcccceeeccc---ccCccccCCHHHHHHHHHHCCCCEEEEEECcCCCCCcCCCc
Confidence            467899999999999997444  4542 33221100   0011012599999999999999999999999862   12  


Q ss_pred             --HHHHHHHHHhCCCcEEEecCCCH-HH-----------HHHHHHcCCCEEEeCCeeecCCC---------CCHHHHHHH
Q 021156          122 --KAAAIEALHAYPGGLQVGGGINS-DN-----------SLSYIEEGATHVIVTSYVFNNGQ---------MDLERLKDL  178 (316)
Q Consensus       122 --~~~i~~~v~~~~~pl~vGGGIr~-e~-----------~~~~l~~Gad~VVigt~~~~~~~---------~~~eli~ei  178 (316)
                        .+.+.++++.+.+|+++|||||+ +|           +++++++|||+|+|||+++++|+         -+|++++++
T Consensus        82 ~~~~~I~~i~~~~~vPi~vGGGIrsi~di~~~~~~~~e~A~~ll~~GadKVvI~T~ai~~p~~~~e~~~~~~n~~li~~i  161 (323)
T d1jvna1          82 PMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYFRSGADKVSIGTDAVYAAEKYYELGNRGDGTSPIETI  161 (323)
T ss_dssp             HHHHHHHHHTTTCCSCEEEESSCSCEECTTCCEECHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHTTSCCCSCSHHHHH
T ss_pred             hHHHHHHhhccccceeEEEecCcccHHHhhhccchhhHHHHHHHHcCCCeEEechHHhhChHHHHHHHhhcccchhHHHH
Confidence              23334444568999999999984 54           68999999999999999986521         135688999


Q ss_pred             HHHhcCceEEEeeeeeecC-C-----------------------eeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEee
Q 021156          179 VRVVGKQRLVLDLSCRKKD-G-----------------------KYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHG  234 (316)
Q Consensus       179 ~~~~G~~~IvvslD~k~~~-g-----------------------~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtd  234 (316)
                      ++.||+|+|++++|++... +                       -|.++++||++.+++++.++++.+++.|++||++|+
T Consensus       162 ~~~fGsq~IvvsiD~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~v~~~gg~~~t~~~l~~~i~~~~~~G~GEIlltd  241 (323)
T d1jvna1         162 SKAYGAQAVVISVDPKRVYVNSQADTKNKVFETEYPGPNGEKYCWYQCTIKGGRESRDLGVWELTRACEALGAGEILLNC  241 (323)
T ss_dssp             HHHHCGGGEEEEECEEEEEESSGGGCSSCCEECSSCCTTCCCEEEEEEEETTTTEEEEEEHHHHHHHHHHTTCCEEEECC
T ss_pred             HHHhCCceEEEEEEEEeccccccccccccccccccccCCCccceeEEEEEcCCeEecCchHHHHhhhhhccCcceeEEEe
Confidence            9999999999999997421 1                       167999999999999999999999999999999999


Q ss_pred             cCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHHhhc
Q 021156          235 VDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQQE  311 (316)
Q Consensus       235 i~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~~~~  311 (316)
                      +++|||+.|+|+++++++.+.+++|+|++||+++++|+.++++.+ +++||++|+++  |.+.+++.++++++.+.+
T Consensus       242 IdrDGt~~G~D~el~~~i~~~~~iPiIasGGi~s~~di~~ll~~~-~v~gv~~gs~~--~~~~~si~elK~~L~~~~  315 (323)
T d1jvna1         242 IDKDGSNSGYDLELIEHVKDAVKIPVIASSGAGVPEHFEEAFLKT-RADACLGAGMF--HRGEFTVNDVKEYLLEHG  315 (323)
T ss_dssp             GGGTTTCSCCCHHHHHHHHHHCSSCEEECSCCCSHHHHHHHHHHS-CCSEEEESHHH--HTTSCCHHHHHHHHHHTT
T ss_pred             ecccccccccchhHHHHHHHhCCCCEEEECCCCCHHHHHHHHHhC-CCeEEEEhhHH--HcCCCCHHHHHHHHHHCC
Confidence            999999999999999999999999999999999999999988775 59999999999  999999999999988764

>d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA
species: Streptomyces coelicolor [TaxId: 1902]

Probab=100.00  E-value=8.6e-48  Score=347.95  Aligned_cols=233  Identities=20%  Similarity=0.304  Sum_probs=193.7

Q ss_pred             cccEEEEEEEeeCCeEEEEEcccccCCCCCCCceeeecCCccCHHHHHHHHHHcCCCcceEEEecCC---cccHHHHHHH
Q 021156           52 CAVRFRPCIDIHKGKVKQIVGSTLQDSKDDGTKLVTNFESDKSAAEFANLYKEDGLTGGHAIMLGAD---PLSKAAAIEA  128 (316)
Q Consensus        52 ~~~~iIP~IDi~~G~vvr~~~g~~~~~~y~~~~~~~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~---~~~~~~i~~~  128 (316)
                      ++|||||+|||++|+|||+++|++.  +|      ++|   +||+++|+.|.+.|++++|++|||+.   ..+...+.++
T Consensus         1 ~kM~iIP~IDl~~g~vV~~~~g~~~--~~------~~~---~dP~~~a~~~~~~ga~~l~i~DLd~~~~~~~~~~~i~~i   69 (239)
T d1vzwa1           1 SKLELLPAVDVRDGQAVRLVHGESG--TE------TSY---GSPLEAALAWQRSGAEWLHLVDLDAAFGTGDNRALIAEV   69 (239)
T ss_dssp             CCCEEEEEEEEETTEEBC----------C------CBC---CCHHHHHHHHHHTTCSEEEEEEHHHHHTSCCCHHHHHHH
T ss_pred             CCCEEEEEEEEECCeEEEEECcccc--Ce------eec---CCHHHHHHHHHHcCCCEEEEEeecccccccchHHHHHHH
Confidence            5899999999999999999988653  22      344   58999999999999999999999965   2355555555


Q ss_pred             HHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCc
Q 021156          129 LHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRW  207 (316)
Q Consensus       129 v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw  207 (316)
                      .+.+++|+|+||||| .++++++++.||++|++||.++++    |++++++.+.|| +++++++|.+  ++  .+..+||
T Consensus        70 ~~~~~~pi~vGGGIrs~~~~~~ll~~Ga~kVvi~s~~~~~----~~~~~~~~~~~g-~~~vv~~d~~--~~--~~~~~g~  140 (239)
T d1vzwa1          70 AQAMDIKVELSGGIRDDDTLAAALATGCTRVNLGTAALET----PEWVAKVIAEHG-DKIAVGLDVR--GT--TLRGRGW  140 (239)
T ss_dssp             HHHCSSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHC----HHHHHHHHHHHG-GGEEEEEEEE--TT--EECCSSS
T ss_pred             HhhcCcceEeecccccchhhhhhhccccccchhhHHhhhc----cccchhhhccCC-ceeeeeeccc--ee--eecCccc
Confidence            567899999999999 599999999999999999999998    999999999998 6788999998  55  6778999


Q ss_pred             ceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhC-CCcCEEE
Q 021156          208 QKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAG-IGRVDVT  286 (316)
Q Consensus       208 ~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G-~g~~gVi  286 (316)
                      ...+. +..++.+++.+.|++++++|++++|||++|+|+++++.+.+.+++|++++||+++.+|++++.+.. .|++||+
T Consensus       141 ~~~~~-~~~~~~~~~~~~g~~eii~tdi~~dGt~~G~d~~l~~~i~~~~~~pvi~sGGv~s~~Di~~l~~l~~~g~~gvi  219 (239)
T d1vzwa1         141 TRDGG-DLYETLDRLNKEGCARYVVTDIAKDGTLQGPNLELLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAI  219 (239)
T ss_dssp             CCCCC-BHHHHHHHHHHTTCCCEEEEEC-------CCCHHHHHHHHHTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEE
T ss_pred             eeecc-ccchhhhhhhhccccEEEEEeecccceecCCcchhhhhhhhccCceEEEECCCCCHHHHHHHHhhhhCCccEee
Confidence            86543 678999999999999999999999999999999999999999999999999999999999998761 1399999


Q ss_pred             EccchhhccCcccHHHHHHHH
Q 021156          287 VGSALDIFGGNLAYKDVVAWH  307 (316)
Q Consensus       287 vG~Al~~~~g~~~~~~~~~~~  307 (316)
                      ||+|+  |+|.++++|+++..
T Consensus       220 vg~al--~~g~i~~~e~~~~~  238 (239)
T d1vzwa1         220 VGKAL--YAKAFTLEEALEAT  238 (239)
T ss_dssp             ECHHH--HTTSSCHHHHHHHH
T ss_pred             EhHHH--HCCCCCHHHHHHhh
Confidence            99999  99999999998754

>d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Putative flavin oxidoreducatase TM0096
species: Thermotoga maritima [TaxId: 2336]

Probab=99.54  E-value=1.5e-14  Score=133.44  Aligned_cols=157  Identities=17%  Similarity=0.241  Sum_probs=122.5

Q ss_pred             CCcEEEecCCC--HHHHHHHHHcCCCEEEeC--------------CeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeec
Q 021156          133 PGGLQVGGGIN--SDNSLSYIEEGATHVIVT--------------SYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKK  196 (316)
Q Consensus       133 ~~pl~vGGGIr--~e~~~~~l~~Gad~VVig--------------t~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~  196 (316)
                      ++-+|++|.--  ..++-++++.|++.|=++              ++..+    +|+++.+++++. .+.+-+.+.+|.+
T Consensus        56 p~~~Ql~g~~p~~~~~aa~~~~~~~~~IdlN~GCP~~~v~~~g~Ga~Ll~----~p~~~~~iv~~~-~~~~~~pvsvK~R  130 (305)
T d1vhna_          56 NVAVQIFGSEPNELSEAARILSEKYKWIDLNAGCPVRKVVKEGAGGALLK----DLRHFRYIVREL-RKSVSGKFSVKTR  130 (305)
T ss_dssp             TEEEEEECSCHHHHHHHHHHHTTTCSEEEEEECCCCHHHHHTTCGGGGGS----CHHHHHHHHHHH-HHHCSSEEEEEEE
T ss_pred             CeEEEEeccchhhhhhhhhhhhhheeeeeEEEEecchhhcccccceeecc----CHHHHHHHhhhh-hhhcccccccccc
Confidence            45579988863  344556677899886654              33344    499999999877 3444344444432


Q ss_pred             CCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCC-CHHHHHHHhhcCCCcEEEEeCCCCHHHHHHH
Q 021156          197 DGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGI-DDELVALLGKYSPIPVTYAGGVTTMADLEKI  275 (316)
Q Consensus       197 ~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~-d~eli~~l~~~~~iPVIasGGI~s~eDi~~l  275 (316)
                              -||.+   .+..++++.+++.|++.+++|.+++...+.|+ ||+.++++++  ++|||++|||.|.+|+.++
T Consensus       131 --------lG~d~---~~~~~~~~~l~~~G~~~itvH~Rt~~q~~~~~a~~~~i~~~~~--~ipvi~NGdI~s~~d~~~~  197 (305)
T d1vhna_         131 --------LGWEK---NEVEEIYRILVEEGVDEVFIHTRTVVQSFTGRAEWKALSVLEK--RIPTFVSGDIFTPEDAKRA  197 (305)
T ss_dssp             --------SCSSS---CCHHHHHHHHHHTTCCEEEEESSCTTTTTSSCCCGGGGGGSCC--SSCEEEESSCCSHHHHHHH
T ss_pred             --------cCccc---chhhHHHHHHHHhCCcEEEechhhhhhccccchhhhHHHhhhh--hhhhhcccccccHHHHHHH
Confidence                    46753   24678999999999999999999998888888 9999988865  6899999999999999999


Q ss_pred             HHhCCCcCEEEEccchhhccCcccHHHHHHHHHhh
Q 021156          276 KVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQQ  310 (316)
Q Consensus       276 ~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~~~  310 (316)
                      ++.. |++||||||++  +.+||.|.++.++....
T Consensus       198 l~~t-g~dgVMiGRga--l~nP~if~~i~~~l~~~  229 (305)
T d1vhna_         198 LEES-GCDGLLVARGA--IGRPWIFKQIKDFLRSG  229 (305)
T ss_dssp             HHHH-CCSEEEESGGG--TTCTTHHHHHHHHHHHS
T ss_pred             HHhc-CCCeEehhHHH--HHhhhHhhhhhhhhcCC
Confidence            9864 49999999999  99999999988765543

>d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=99.26  E-value=1e-11  Score=111.03  Aligned_cols=117  Identities=16%  Similarity=0.204  Sum_probs=94.0

Q ss_pred             CceEEEeeeeeecCCeeEEEeCCccee-cccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEE
Q 021156          184 KQRLVLDLSCRKKDGKYAIVTDRWQKF-SDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTY  262 (316)
Q Consensus       184 ~~~IvvslD~k~~~g~~~v~~~gw~~~-~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIa  262 (316)
                      +.||++++|++  +|+ .|+...++.. ..-+|.++++.+.+.|++++.+.|.++.-.....++++++++++.+++|+.+
T Consensus         3 ~kRIIP~Idi~--~g~-~Vk~~~~~~~~~~gdP~~~a~~~~~~g~dei~ivDld~~~~~~~~~~~~i~~i~~~~~~pi~v   79 (253)
T d1thfd_           3 AKRIIACLDVK--DGR-VVKGSNFENLRDSGDPVELGKFYSEIGIDELVFLDITASVEKRKTMLELVEKVAEQIDIPFTV   79 (253)
T ss_dssp             CCEEEEEEEEE--TTE-ECCCSCCTTSSCTTCHHHHHHHHHHTTCCEEEEEESSCSSSHHHHHHHHHHHHHTTCCSCEEE
T ss_pred             CCceEEEEEEE--CCE-EEECCCCceeEECCCHHHHHHHHHHcCCCEEEEEeecccccCcccHHHHHHHHHhccCcccee
Confidence            36899999998  885 6666555432 2237999999999999999977776643222335889999999999999999


Q ss_pred             EeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHH
Q 021156          263 AGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWH  307 (316)
Q Consensus       263 sGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~  307 (316)
                      +|||++.+++++++..|  ++.|++|+++  ++++-.++++.+..
T Consensus        80 gGGIr~~e~i~~~l~~G--a~kviigs~~--~~n~~~l~~~~~~~  120 (253)
T d1thfd_          80 GGGIHDFETASELILRG--ADKVSINTAA--VENPSLITQIAQTF  120 (253)
T ss_dssp             ESSCCSHHHHHHHHHTT--CSEEEESHHH--HHCTHHHHHHHHHH
T ss_pred             ecccccchhhhhHHhcC--CCEEEEChHH--hhChHHHHHHHHHc
Confidence            99999999999999999  9999999999  98765555555443

>d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

Probab=99.25  E-value=7.6e-12  Score=111.74  Aligned_cols=119  Identities=20%  Similarity=0.251  Sum_probs=96.7

Q ss_pred             CceEEEeeeeeecCCeeEEEeCCccee-cccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEE
Q 021156          184 KQRLVLDLSCRKKDGKYAIVTDRWQKF-SDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTY  262 (316)
Q Consensus       184 ~~~IvvslD~k~~~g~~~v~~~gw~~~-~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIa  262 (316)
                      +.||++++|++  +|+ .|+..++... ..-+|.+.++.+.+.|++++.+.|++..-...+.++++++++.+.+.+|+.+
T Consensus         3 ~kRIIP~IDi~--~G~-~Vk~~~~~~~~~~gdP~~~a~~~~~~g~dei~iiDl~~~~~~~~~~~~~i~~i~~~~~~pi~v   79 (251)
T d1ka9f_           3 AKRIVPCLDVH--AGR-VVKGVNFVNLRDAGDPVEAARAYDEAGADELVFLDISATHEERAILLDVVARVAERVFIPLTV   79 (251)
T ss_dssp             CBEEEEEEEEE--TTE-ETTCCCSSCCSSTTCHHHHHHHHHHHTCSCEEEEECCSSTTCHHHHHHHHHHHHTTCCSCEEE
T ss_pred             CCcEEEEEEEE--CCE-EEECccCCceEECCCHHHHHHHHHHcCCCEEEEEecccccccchhHHHHHHHHHhccCcchhe
Confidence            47999999998  885 6666666432 2227999999999999999988887755333456889999999999999999


Q ss_pred             EeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHHh
Q 021156          263 AGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       263 sGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~~  309 (316)
                      +|||++.++++++++.|  ++.|++|+++  ++++-.++++.+..-.
T Consensus        80 gGGIrs~e~~~~ll~~G--a~kVii~s~~--~~n~~~i~~~~~~~G~  122 (251)
T d1ka9f_          80 GGGVRSLEDARKLLLSG--ADKVSVNSAA--VRRPELIRELADHFGA  122 (251)
T ss_dssp             ESSCCSHHHHHHHHHHT--CSEEEECHHH--HHCTHHHHHHHHHHCG
T ss_pred             eccccCHHHHHHHHHcC--CCEEEECchh--hhCHHHHHHHHHhhcc
Confidence            99999999999999999  9999999999  9887556665554433

>d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.18  E-value=1.9e-11  Score=109.18  Aligned_cols=115  Identities=18%  Similarity=0.132  Sum_probs=93.4

Q ss_pred             eEEEeeeeeecCCeeEEEeCCccee---cccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEE
Q 021156          186 RLVLDLSCRKKDGKYAIVTDRWQKF---SDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTY  262 (316)
Q Consensus       186 ~IvvslD~k~~~g~~~v~~~gw~~~---~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIa  262 (316)
                      +|++++|++  +|+ .|.++|+...   .--+|.+.++.+.+.|++++.+.|++..-....+++++++++.+.+.+|+++
T Consensus         5 rIIP~IDi~--~g~-vv~~kg~~~~~~~~~~dP~~~a~~~~~~gadei~ivDl~~~~~~~~~~~~~i~~i~~~~~~pi~~   81 (252)
T d1h5ya_           5 RIIPCLDID--GGA-KVVVKGVNFQGIREVGDPVEMAVRYEEEGADEIAILDITAAPEGRATFIDSVKRVAEAVSIPVLV   81 (252)
T ss_dssp             EEEEEEEEC--GGG-CEECTTCCCHHHHEEECHHHHHHHHHHTTCSCEEEEECCCCTTTHHHHHHHHHHHHHHCSSCEEE
T ss_pred             EEEEEEEEE--CCE-EEEEEeecCcceEECCCHHHHHHHHHHCCCCEEEEEeccccccccccHHHHHHHHHhhcCCccee
Confidence            799999997  775 6677776421   1127999999999999999988887654333345889999999999999999


Q ss_pred             EeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHH
Q 021156          263 AGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWH  307 (316)
Q Consensus       263 sGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~  307 (316)
                      +|||++.+++++++..|  ++.|++|+++  +.++-.++++.+..
T Consensus        82 gGGIr~~e~~~~ll~~G--~~kVii~s~~--~~~~~~~~~~~~~~  122 (252)
T d1h5ya_          82 GGGVRSLEDATTLFRAG--ADKVSVNTAA--VRNPQLVALLAREF  122 (252)
T ss_dssp             ESSCCSHHHHHHHHHHT--CSEEEESHHH--HHCTHHHHHHHHHH
T ss_pred             ecccchhhhhhhHhhcC--CcEEEecccc--cCCcchHHHHHHhc
Confidence            99999999999999999  9999999999  88876666655443

>d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA
species: Streptomyces coelicolor [TaxId: 1902]

Probab=99.17  E-value=5.7e-11  Score=105.08  Aligned_cols=115  Identities=23%  Similarity=0.191  Sum_probs=91.4

Q ss_pred             eEEEeeeeeecCCeeEEEeC-Cccee--cccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEE
Q 021156          186 RLVLDLSCRKKDGKYAIVTD-RWQKF--SDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTY  262 (316)
Q Consensus       186 ~IvvslD~k~~~g~~~v~~~-gw~~~--~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIa  262 (316)
                      +|++++|++  +|+ .|+.. |....  .--+|.+.++.+.+.|++++.+.|+++- ..++.+.++++.+.+.+.+|+++
T Consensus         4 ~iIP~IDl~--~g~-vV~~~~g~~~~~~~~~dP~~~a~~~~~~ga~~l~i~DLd~~-~~~~~~~~~i~~i~~~~~~pi~v   79 (239)
T d1vzwa1           4 ELLPAVDVR--DGQ-AVRLVHGESGTETSYGSPLEAALAWQRSGAEWLHLVDLDAA-FGTGDNRALIAEVAQAMDIKVEL   79 (239)
T ss_dssp             EEEEEEEEE--TTE-EBC--------CCBCCCHHHHHHHHHHTTCSEEEEEEHHHH-HTSCCCHHHHHHHHHHCSSEEEE
T ss_pred             EEEEEEEEE--CCe-EEEEECccccCeeecCCHHHHHHHHHHcCCCEEEEEeeccc-ccccchHHHHHHHHhhcCcceEe
Confidence            799999998  885 66554 33221  1127999999999999999988888754 34567999999999989999999


Q ss_pred             EeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHH
Q 021156          263 AGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHA  308 (316)
Q Consensus       263 sGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~  308 (316)
                      +|||++.+|+.++++.|  ++.|++|+++  ++++-.++++.+...
T Consensus        80 GGGIrs~~~~~~ll~~G--a~kVvi~s~~--~~~~~~~~~~~~~~g  121 (239)
T d1vzwa1          80 SGGIRDDDTLAAALATG--CTRVNLGTAA--LETPEWVAKVIAEHG  121 (239)
T ss_dssp             ESSCCSHHHHHHHHHTT--CSEEEECHHH--HHCHHHHHHHHHHHG
T ss_pred             ecccccchhhhhhhccc--cccchhhHHh--hhccccchhhhccCC
Confidence            99999999999999999  9999999999  887766666555433

>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.12  E-value=2.5e-09  Score=91.89  Aligned_cols=165  Identities=14%  Similarity=-0.021  Sum_probs=107.5

Q ss_pred             HHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHhCCCcEEE---------ecCCC--HHHHHHHHHcCCCEEEeCCee
Q 021156           96 AEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAYPGGLQV---------GGGIN--SDNSLSYIEEGATHVIVTSYV  164 (316)
Q Consensus        96 ~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~~~pl~v---------GGGIr--~e~~~~~l~~Gad~VVigt~~  164 (316)
                      .++|+.....|+.++++-+       ...+.+.-+....|+..         ...+.  .++.+.+.++|++.+.+....
T Consensus        26 a~~A~aa~~~Ga~~i~~~~-------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~agad~v~~~~~~   98 (222)
T d1y0ea_          26 SKMALAAYEGGAVGIRANT-------KEDILAIKETVDLPVIGIVKRDYDHSDVFITATSKEVDELIESQCEVIALDATL   98 (222)
T ss_dssp             HHHHHHHHHHTCSEEEEES-------HHHHHHHHHHCCSCEEEECBCCCTTCCCCBSCSHHHHHHHHHHTCSEEEEECSC
T ss_pred             HHHHHHHHHCCCeEEecCC-------HHHHHHHHHhcCCccceeeccCCcchHHhhcccHHHHHhHHHcCCCEEEeeccc
Confidence            4677777778877765421       11222222334555432         23443  478899999999999887665


Q ss_pred             ecCCCCC-HHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCC
Q 021156          165 FNNGQMD-LERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLG  243 (316)
Q Consensus       165 ~~~~~~~-~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G  243 (316)
                      ..+..-. .+.++.+.+.. ... .+..+..                    ..+.+..+.+.|++.+.++.....++..+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~-~~~-~v~~~~~--------------------t~~~a~~~~~~g~d~i~~~~~~~~~~~~~  156 (222)
T d1y0ea_          99 QQRPKETLDELVSYIRTHA-PNV-EIMADIA--------------------TVEEAKNAARLGFDYIGTTLHGYTSYTQG  156 (222)
T ss_dssp             SCCSSSCHHHHHHHHHHHC-TTS-EEEEECS--------------------SHHHHHHHHHTTCSEEECTTTTSSTTSTT
T ss_pred             cccccchHHHHHHHHHHhC-Cce-EEeecCC--------------------CHHHHHHHHHcCCCeEEEeccCCcccccC
Confidence            4432111 33444443333 222 2333321                    23567788999999887654433333333


Q ss_pred             C-----CHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          244 I-----DDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       244 ~-----d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      .     ++++++++++.+++||+++|||+|.+|+.++++.|  +++|+||+|+
T Consensus       157 ~~~~~~~~~~i~~~~~~~~iPVia~GGI~t~~d~~~~~~~G--AdgV~iGsAi  207 (222)
T d1y0ea_         157 QLLYQNDFQFLKDVLQSVDAKVIAEGNVITPDMYKRVMDLG--VHCSVVGGAI  207 (222)
T ss_dssp             CCTTHHHHHHHHHHHHHCCSEEEEESSCCSHHHHHHHHHTT--CSEEEECHHH
T ss_pred             ccchhhHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHcC--CCEEEEchhh
Confidence            2     57889999889999999999999999999999998  9999999998

>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.97  E-value=1.6e-08  Score=87.42  Aligned_cols=173  Identities=12%  Similarity=-0.042  Sum_probs=113.4

Q ss_pred             HHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHH-hCCCcEEEec---------CCC--HHHHHHHHHcCCCEEEeCCe
Q 021156           96 AEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALH-AYPGGLQVGG---------GIN--SDNSLSYIEEGATHVIVTSY  163 (316)
Q Consensus        96 ~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~-~~~~pl~vGG---------GIr--~e~~~~~l~~Gad~VVigt~  163 (316)
                      .++|+...+.|+..+.+-+        ....+.++ .+..|+....         .+.  .++.+.+..+|++.+.+.+.
T Consensus        36 ~~~A~a~~~~Ga~~i~~~~--------~~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gad~i~~~~~  107 (230)
T d1yxya1          36 PLMAKAAQEAGAVGIRANS--------VRDIKEIQAITDLPIIGIIKKDYPPQEPFITATMTEVDQLAALNIAVIAMDCT  107 (230)
T ss_dssp             HHHHHHHHHHTCSEEEEES--------HHHHHHHHTTCCSCEEEECBCCCTTSCCCBSCSHHHHHHHHTTTCSEEEEECC
T ss_pred             HHHHHHHHHCCCeEEEecC--------hhhHHHHHhhhhcchhhhhcccCCcceeeechhHHHHHHHHhcCCCEEEEecc
Confidence            3678888888888665522        12233344 4566665332         222  37889999999999988876


Q ss_pred             eecCCC--CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCcccc
Q 021156          164 VFNNGQ--MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKK  241 (316)
Q Consensus       164 ~~~~~~--~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~  241 (316)
                      ......  -..++++++...++ .. .+..++.                    ..+.++.+.+.|++.+.++.....+..
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~v~--------------------t~~~a~~a~~~Gad~i~~~~~~~~~~~  165 (230)
T d1yxya1         108 KRDRHDGLDIASFIRQVKEKYP-NQ-LLMADIS--------------------TFDEGLVAHQAGIDFVGTTLSGYTPYS  165 (230)
T ss_dssp             SSCCTTCCCHHHHHHHHHHHCT-TC-EEEEECS--------------------SHHHHHHHHHTTCSEEECTTTTSSTTS
T ss_pred             cccccchhhHHHHHHHHHhcCC-Cc-eEecCCC--------------------CHHHHHHHHhcCCCEEEeecccccccc
Confidence            544311  11456666666553 22 2222321                    246788899999998877776554433


Q ss_pred             CC--CCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHH
Q 021156          242 LG--IDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAW  306 (316)
Q Consensus       242 ~G--~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~  306 (316)
                      .+  .....+.+.....++||+++|||++.+|+.+++++|  +++|+||+|+  . +   .+++.++
T Consensus       166 ~~~~~~~~~~~~~~~~~~ipvia~GGI~t~~d~~~al~~G--Ad~V~vGsAi--~-~---p~~i~~~  224 (230)
T d1yxya1         166 RQEAGPDVALIEALCKAGIAVIAEGKIHSPEEAKKINDLG--VAGIVVGGAI--T-R---PKEIAER  224 (230)
T ss_dssp             CCSSSCCHHHHHHHHHTTCCEEEESCCCSHHHHHHHHTTC--CSEEEECHHH--H-C---HHHHHHH
T ss_pred             cccchHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcC--CCEEEEChhh--c-C---HHHHHHH
Confidence            22  222335555566799999999999999999999998  9999999999  5 2   5555443

>d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]

Probab=98.96  E-value=6e-10  Score=102.61  Aligned_cols=104  Identities=18%  Similarity=0.151  Sum_probs=77.7

Q ss_pred             CceEEEeeeeeecCCee--EEEeCCc--cee-----ccc----CHHHHHHHHHHcCCCEEEEeecCCc--ccc-CCCCHH
Q 021156          184 KQRLVLDLSCRKKDGKY--AIVTDRW--QKF-----SDV----YLDERVLDFLASYADEFLVHGVDVE--GKK-LGIDDE  247 (316)
Q Consensus       184 ~~~IvvslD~k~~~g~~--~v~~~gw--~~~-----~~~----~~~e~a~~~~~~Ga~~ilvtdi~~d--G~~-~G~d~e  247 (316)
                      +.||+++||++  +|+.  ...++|-  ...     .+.    +|.+.|+.+.+.|++++.+.|+++.  |.. ..++++
T Consensus         8 ~kRIIP~ldi~--~g~~~~~~l~Kg~~f~~~~~~~~~~~r~iGdP~~~a~~~~~~gaDeL~ivDidas~~~~~~~~~~~~   85 (323)
T d1jvna1           8 TRRIIACLDVR--TNDQGDLVVTKGDQYDVREKSDGKGVRNLGKPVQLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLE   85 (323)
T ss_dssp             CCCEEEEEEEE--ECTTSCEESSTTC---------------CHHHHHHHHHHHHTTCSEEEEEEEC---CCCGGGCHHHH
T ss_pred             CccEEEEEEEe--CCccceEEEEcCcccceeecccccCccccCCHHHHHHHHHHCCCCEEEEEECcCCCCCcCCCchHHH
Confidence            46999999998  5530  1112321  110     011    7899999999999999999888653  221 345689


Q ss_pred             HHHHHhhcCCCcEEEEeCCCCHHH-----------HHHHHHhCCCcCEEEEccch
Q 021156          248 LVALLGKYSPIPVTYAGGVTTMAD-----------LEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       248 li~~l~~~~~iPVIasGGI~s~eD-----------i~~l~~~G~g~~gVivG~Al  291 (316)
                      +++++++.+.+|+.++|||+|.+|           ++++++.|  ++.|++|+++
T Consensus        86 ~I~~i~~~~~vPi~vGGGIrsi~di~~~~~~~~e~A~~ll~~G--adKVvI~T~a  138 (323)
T d1jvna1          86 VLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYFRSG--ADKVSIGTDA  138 (323)
T ss_dssp             HHHHHTTTCCSCEEEESSCSCEECTTCCEECHHHHHHHHHHHT--CSEEEECHHH
T ss_pred             HHHhhccccceeEEEecCcccHHHhhhccchhhHHHHHHHHcC--CCeEEechHH
Confidence            999999999999999999999776           47899999  9999999998

>d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA
species: Thermotoga maritima [TaxId: 2336]

Probab=98.95  E-value=1.2e-09  Score=96.49  Aligned_cols=111  Identities=16%  Similarity=0.132  Sum_probs=87.8

Q ss_pred             eEEEeeeeeecCCeeEEEeCCcce----ecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEE
Q 021156          186 RLVLDLSCRKKDGKYAIVTDRWQK----FSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVT  261 (316)
Q Consensus       186 ~IvvslD~k~~~g~~~v~~~gw~~----~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVI  261 (316)
                      .|+++||++  +|+ .|+..++..    ...-+|.+.|+.+.+.|++++.+-|++.--...+.+..+++.+++. .+|+.
T Consensus         2 ~iIP~iDl~--~Gk-vVrl~~G~~~~~~~y~~dP~~~a~~~~~~g~~~l~ivDLda~~~~~~~~~~~~~~~~~~-~~pl~   77 (241)
T d1qo2a_           2 LVVPAIDLF--RGK-VARMIKGRKENTIFYEKDPVELVEKLIEEGFTLIHVVDLSNAIENSGENLPVLEKLSEF-AEHIQ   77 (241)
T ss_dssp             EEEEEEEEE--TTE-EEEEGGGCGGGEEEESSCHHHHHHHHHHTTCCCEEEEEHHHHHHCCCTTHHHHHHGGGG-GGGEE
T ss_pred             EEEEEEEEE--CCE-EEEEeCcccCCceEECCCHHHHHHHHHHCCCCEEEEEecccccccCCcchhheehhccc-ccchh
Confidence            489999998  886 777655543    2334899999999999999998888765423344566777777665 47999


Q ss_pred             EEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHH
Q 021156          262 YAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVV  304 (316)
Q Consensus       262 asGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~  304 (316)
                      ++|||++.++++++++.|  ++.|++++++  ++.+..++++.
T Consensus        78 ~gGGI~s~~~~~~~~~~G--a~kVvi~s~~--~~~~~~~~~~~  116 (241)
T d1qo2a_          78 IGGGIRSLDYAEKLRKLG--YRRQIVSSKV--LEDPSFLKSLR  116 (241)
T ss_dssp             EESSCCSHHHHHHHHHTT--CCEEEECHHH--HHCTTHHHHHH
T ss_pred             hhhhhhhhhhhhhccccc--cceEecCccc--ccCchhhhhhc
Confidence            999999999999999998  9999999999  88876555543

>d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.68  E-value=7e-07  Score=78.60  Aligned_cols=169  Identities=16%  Similarity=0.129  Sum_probs=119.2

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCC--cccHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCC
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGAD--PLSKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQ  169 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~--~~~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~  169 (316)
                      .||.++|+ |.+.|+..+-+. -|-.  ..+...+..+.+.+++|+..===|- ..++.....+|||.|.+=.+.+.   
T Consensus        63 ~d~~~~a~-~~~~gA~aiSVL-Td~~~F~Gs~~dl~~v~~~~~~PiLrKDFIid~~QI~ea~~~GADaiLLI~~~L~---  137 (247)
T d1a53a_          63 RDPIEYSK-FMERYAVGLSIL-TEEKYFNGSYETLRKIASSVSIPILMKDFIVKESQIDDAYNLGADTVLLIVKILT---  137 (247)
T ss_dssp             CCHHHHHH-HHTTTCSEEEEE-CCCTTTCCCHHHHHHHHHHCCSCEEEESCCCSHHHHHHHHHHTCSEEEEEGGGSC---
T ss_pred             cCHHHHHH-HHHhCCCeEEEe-cCccccccchHHHHHHHhccccceeecccccChHHHHHHHHhhcchhhhhhhhcc---
Confidence            47999986 556788765554 1111  2344555555567889987544443 47899999999999988777775   


Q ss_pred             CCHHHHHHHH---HHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCH
Q 021156          170 MDLERLKDLV---RVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDD  246 (316)
Q Consensus       170 ~~~eli~ei~---~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~  246 (316)
                        .+.++++.   ..+|       +|+-       |-+         ...+.+.+..+.|++-+-++.++..  ....|.
T Consensus       138 --~~~l~~l~~~a~~lg-------l~~L-------vEv---------h~~~El~~a~~~~a~iIGINnRnL~--t~~vd~  190 (247)
T d1a53a_         138 --ERELESLLEYARSYG-------MEPL-------IEI---------NDENDLDIALRIGARFIGINSRDLE--TLEINK  190 (247)
T ss_dssp             --HHHHHHHHHHHHTTT-------CCCE-------EEE---------CSHHHHHHHHHTTCSEEEEESBCTT--TCCBCH
T ss_pred             --HHHHHHHHHHHHHHh-------hhHH-------hhc---------CCHHHHHHHHhCCCCeEeeeccChh--hhhhhh
Confidence              44444444   4455       3321       111         1235567778899998888887764  344588


Q ss_pred             HHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCc
Q 021156          247 ELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGN  297 (316)
Q Consensus       247 eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~  297 (316)
                      +...++....  ++.+|+.+||.+.+|+.++.+.|  +++++||.++  +..+
T Consensus       191 ~~~~~L~~~ip~~~~~IaESGI~t~~dv~~l~~~G--~davLIGeaL--mk~~  239 (247)
T d1a53a_         191 ENQRKLISMIPSNVVKVAESGISERNEIEELRKLG--VNAFLIGSSL--MRNP  239 (247)
T ss_dssp             HHHHHHHHHSCTTSEEEEESCCCCHHHHHHHHHTT--CCEEEECHHH--HHCT
T ss_pred             hHHHHHHhhCCCCCeEEEecCCCCHHHHHHHHHCC--CCEEEECHHH--cCCC
Confidence            8777776654  67899999999999999999998  9999999999  8765

>d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Thermus thermophilus [TaxId: 274]

Probab=98.67  E-value=6.1e-07  Score=79.30  Aligned_cols=174  Identities=12%  Similarity=0.024  Sum_probs=119.3

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCC-cccHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCC
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGAD-PLSKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQM  170 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~-~~~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~  170 (316)
                      -||.++|+.|.+.|+..+.+.-=.-- ..+...+..+.+.+++|+.----|- ..++.+...+|||.|.+-...+.+ + 
T Consensus        65 ~dp~~~A~~y~~~GA~aiSVLTe~~~F~Gs~~dl~~v~~~~~iPvLrKDFIid~~QI~ea~~~GADaVLLIaall~~-~-  142 (254)
T d1vc4a_          65 VDPVEAALAYARGGARAVSVLTEPHRFGGSLLDLKRVREAVDLPLLRKDFVVDPFMLEEARAFGASAALLIVALLGE-L-  142 (254)
T ss_dssp             CCHHHHHHHHHHTTCSEEEEECCCSSSCCCHHHHHHHHHHCCSCEEEESCCCSHHHHHHHHHTTCSEEEEEHHHHGG-G-
T ss_pred             CCHHHHHHHHHhcCCceEEEEcCcccccccHHHHHHHHHHcCCCcccCCccccHHHHHHHHhccchHHHHHHHHHHH-H-
Confidence            48999999999999997777641111 2344444444456899999999997 689999999999999887766543 1 


Q ss_pred             CHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHH-HH
Q 021156          171 DLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDE-LV  249 (316)
Q Consensus       171 ~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~e-li  249 (316)
                       ...+-+.+..+|       +|+       .|-++.         .+.+....+.|++-|-++.++..-.....+.. .+
T Consensus       143 -l~~l~~~A~~lg-------l~~-------LVEvh~---------~~El~~a~~~~a~iIGINnRdL~t~~vd~~~~~~l  198 (254)
T d1vc4a_         143 -TGAYLEEARRLG-------LEA-------LVEVHT---------ERELEIALEAGAEVLGINNRDLATLHINLETAPRL  198 (254)
T ss_dssp             -HHHHHHHHHHHT-------CEE-------EEEECS---------HHHHHHHHHHTCSEEEEESBCTTTCCBCTTHHHHH
T ss_pred             -HHHHHHHHHHhC-------Cce-------EEEecc---------HHHHhhhhcCCCCEEEEeccchhhhhcchHHHHHh
Confidence             222334455565       444       232232         24456777889998889988776333333321 22


Q ss_pred             HH-Hhhc-CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCc
Q 021156          250 AL-LGKY-SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGN  297 (316)
Q Consensus       250 ~~-l~~~-~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~  297 (316)
                      .. +.+. .++.+|+.+||.+.+|+..+ +.|  +++|+||.++  ...+
T Consensus       199 ~~~i~~~~~~~i~IsESGI~~~~dv~~l-~~g--~davLIGesL--m~~~  243 (254)
T d1vc4a_         199 GRLARKRGFGGVLVAESGYSRKEELKAL-EGL--FDAVLIGTSL--MRAP  243 (254)
T ss_dssp             HHHHHHTTCCSEEEEESCCCSHHHHHTT-TTT--CSEEEECHHH--HTSS
T ss_pred             hhcccccCCCCEEEEccCCCCHHHHHHH-HcC--CCEEEEChhh--cCCC
Confidence            23 3232 35789999999999999876 456  9999999999  8654

>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydropyrimidine dehydrogenase, domain 4
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.54  E-value=4.6e-07  Score=82.18  Aligned_cols=156  Identities=14%  Similarity=0.073  Sum_probs=103.2

Q ss_pred             EEecCCCHHH----HHHHHHcCCCEEEeCCeeecCC---------CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEE
Q 021156          137 QVGGGINSDN----SLSYIEEGATHVIVTSYVFNNG---------QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIV  203 (316)
Q Consensus       137 ~vGGGIr~e~----~~~~l~~Gad~VVigt~~~~~~---------~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~  203 (316)
                      .+.+|-..++    ++.+.++|||.+.++-..-+..         ..+++.+.++.+.. ++..-+.+-+         +
T Consensus       108 ~~~~~~~~~d~~~~a~~~~~~gad~lelN~scPn~~~~~~~~~~~~~~~~~~~~i~~~v-~~~~~~pv~v---------K  177 (312)
T d1gtea2         108 SIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWV-RQAVQIPFFA---------K  177 (312)
T ss_dssp             EECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHHH-HHHCSSCEEE---------E
T ss_pred             ccccccchhHHHHHHHHhccCCCCeEeeccCCCCcccccccchhhhhhHHHHHHHHHHH-hhccCCceee---------c
Confidence            4445655332    5556678999999875443220         12588888888777 2332222222         2


Q ss_pred             eCCcceecccCHHHHHHHHHHcCCCEEEEeec-------CCc---------------cccCCC-----CHHHHHHHhhcC
Q 021156          204 TDRWQKFSDVYLDERVLDFLASYADEFLVHGV-------DVE---------------GKKLGI-----DDELVALLGKYS  256 (316)
Q Consensus       204 ~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi-------~~d---------------G~~~G~-----d~eli~~l~~~~  256 (316)
                      .....    .+..++++.+.+.|++.+++++.       +.+               |-+.|+     .++.++++++.+
T Consensus       178 l~~~~----~~~~~i~~~~~~~g~~gi~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~gg~sG~~i~~~al~~v~~~~~~~  253 (312)
T d1gtea2         178 LTPNV----TDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARAL  253 (312)
T ss_dssp             ECSCS----SCHHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHHHHHHHHHHS
T ss_pred             ccccc----hhHHHHHHHHHHhcccceEEEeecccccccccccccccccccccccccccccCcCcchhhHHHHHHHHHHc
Confidence            22111    14668889999999999876442       111               112333     256788887765


Q ss_pred             -CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHHh
Q 021156          257 -PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       257 -~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~~  309 (316)
                       ++|||++|||.+.+|+.+.+.+|  +++|.|++++ .|+|+-.++++.+-+++
T Consensus       254 ~~ipIi~~GGI~~~~d~~~~l~aG--A~~Vqv~ta~-~~~G~~~i~~i~~~L~~  304 (312)
T d1gtea2         254 PGFPILATGGIDSAESGLQFLHSG--ASVLQVCSAV-QNQDFTVIQDYCTGLKA  304 (312)
T ss_dssp             TTCCEEEESSCCSHHHHHHHHHTT--CSEEEESHHH-HTSCTTHHHHHHHHHHH
T ss_pred             CCCcEEEEcCCCCHHHHHHHHHcC--CCeeEECHhh-hccChHHHHHHHHHHHH
Confidence             59999999999999999999998  9999999997 35678777777664443

>d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=98.52  E-value=6.4e-07  Score=82.30  Aligned_cols=169  Identities=18%  Similarity=0.195  Sum_probs=109.0

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCC--cccHHHHHHHHHhCCCcEEEecCCC--H-HHHHHHHHcCCCEEEeCCeeecC
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGAD--PLSKAAAIEALHAYPGGLQVGGGIN--S-DNSLSYIEEGATHVIVTSYVFNN  167 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~--~~~~~~i~~~v~~~~~pl~vGGGIr--~-e~~~~~l~~Gad~VVigt~~~~~  167 (316)
                      .+|. +|..++++|..++    |...  .......++.+++...++-+.=|++  . +.++.++++|++.++|.++.-..
T Consensus        49 ~~~~-mA~als~~GGlGv----i~r~~~~e~~~~~i~~vk~~~~~v~~~vgv~~~~~e~~~~li~agvd~ivId~A~G~~  123 (330)
T d1vrda1          49 TEAA-LAKALAREGGIGI----IHKNLTPDEQARQVSIVKKTRLLVGAAVGTSPETMERVEKLVKAGVDVIVIDTAHGHS  123 (330)
T ss_dssp             CSHH-HHHHHHTTTCEEE----ECSSSCHHHHHHHHHHHHTCCBCCEEEECSSTTHHHHHHHHHHTTCSEEEECCSCCSS
T ss_pred             CCHH-HHHHHHHCCCeEE----eecccchhhhHHHHHHHhhhccEEEEEEecCHHHHHHHHHHHHCCCCEEEEecCCCCc
Confidence            3564 8999999874332    2222  1122233455555555555566675  3 67899999999999998765442


Q ss_pred             CCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecC-------Cccc
Q 021156          168 GQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVD-------VEGK  240 (316)
Q Consensus       168 ~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~-------~dG~  240 (316)
                       +--.+.++++.+.+. +..++.=.+.                    ..+.++.+.+.|++.+.+ .+.       +..+
T Consensus       124 -~~~~~~ik~ik~~~~-~~~viaGnV~--------------------t~~~a~~l~~~GaD~v~V-Gig~Gs~ctt~~~~  180 (330)
T d1vrda1         124 -RRVIETLEMIKADYP-DLPVVAGNVA--------------------TPEGTEALIKAGADAVKV-GVGPGSICTTRVVA  180 (330)
T ss_dssp             -HHHHHHHHHHHHHCT-TSCEEEEEEC--------------------SHHHHHHHHHTTCSEEEE-CSSCSTTCHHHHHH
T ss_pred             -hhHHHHHHHHHHhCC-CCCEEeechh--------------------HHHHHHHHHHcCCCEEee-ccccCcccccccee
Confidence             001245566655553 3333333221                    246788999999999876 332       2222


Q ss_pred             cCC-CCHHHHHH---HhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          241 KLG-IDDELVAL---LGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       241 ~~G-~d~eli~~---l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      .-| |.+..+..   .++..++|||+.|||++..|+.+++.+|  +++||+|+.+
T Consensus       181 G~g~p~~sai~~~~~~~~~~~vpvIAdGGi~~~gdiakAla~G--Ad~Vm~Gs~f  233 (330)
T d1vrda1         181 GVGVPQLTAVMECSEVARKYDVPIIADGGIRYSGDIVKALAAG--AESVMVGSIF  233 (330)
T ss_dssp             CCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTT--CSEEEESHHH
T ss_pred             ccccccchhHHHHHHHHHhcCceEEecCCcccCCchheeeecc--Cceeeecchh
Confidence            223 24444444   4556789999999999999999999999  9999999976

>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Lactococcus lactis, isozyme B [TaxId: 1358]

Probab=98.49  E-value=1.2e-07  Score=85.78  Aligned_cols=90  Identities=21%  Similarity=0.247  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHcCCCEEEEeecCC----------------ccccCCC-----CHHHHHHHhhcCCCcEEEEeCCCCHHHHH
Q 021156          215 LDERVLDFLASYADEFLVHGVDV----------------EGKKLGI-----DDELVALLGKYSPIPVTYAGGVTTMADLE  273 (316)
Q Consensus       215 ~~e~a~~~~~~Ga~~ilvtdi~~----------------dG~~~G~-----d~eli~~l~~~~~iPVIasGGI~s~eDi~  273 (316)
                      ..++++.+.+.|++.+.++....                .|..+|+     ++++++++++.+++|||++|||.|.+|+.
T Consensus       178 ~~~~a~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~sG~~i~~~~l~~i~~i~~~~~ipIig~GGI~s~~Da~  257 (311)
T d1ep3a_         178 IVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDVDIPIIGMGGVANAQDVL  257 (311)
T ss_dssp             SHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTTCSSCEEECSSCCSHHHHH
T ss_pred             hHHHHHHHHHhhhheeEEEeeccccccccccccccccccCCCCCCCcccchhHHHHHHHhhhcceeEEEeCCcCCHHHHH
Confidence            45788899999999887644211                0122333     47889999998999999999999999999


Q ss_pred             HHHHhCCCcCEEEEccchhhccCcccHHHHHHHHH
Q 021156          274 KIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHA  308 (316)
Q Consensus       274 ~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~  308 (316)
                      +.+..|  +++|++||++  |.++|-+.++.+-+.
T Consensus       258 ~~i~~G--Ad~V~ig~~~--~~~P~i~~~I~~~L~  288 (311)
T d1ep3a_         258 EMYMAG--ASAVAVGTAN--FADPFVCPKIIDKLP  288 (311)
T ss_dssp             HHHHHT--CSEEEECTHH--HHCTTHHHHHHHHHH
T ss_pred             HHHHcC--CCEEEecHHH--HcCChHHHHHHHHHH
Confidence            999988  9999999999  999998888866443

>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.29  E-value=7e-06  Score=70.82  Aligned_cols=185  Identities=14%  Similarity=0.070  Sum_probs=123.0

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCc----ccHHHHHHHHH-hCCCcEEEecCCC-H-HHHHHHHHcCCCEEEeCCeeec
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADP----LSKAAAIEALH-AYPGGLQVGGGIN-S-DNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~----~~~~~i~~~v~-~~~~pl~vGGGIr-~-e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      +..+.++.+.+.|++++|+==.|+..    .-....++.++ ....|+.+===+. . +-++++.++||+.|.+-.+...
T Consensus        15 ~l~~~i~~~~~~g~d~iHiDimDg~Fvpn~s~g~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~ga~~i~~H~E~~~   94 (217)
T d2flia1          15 NFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMTIHTESTR   94 (217)
T ss_dssp             GHHHHHHHHHHTTCCEEEEEEEBSSSSSCBCBCHHHHHHHHTTCCSEEEEEEESSSGGGGHHHHHHHTCSEEEEEGGGCS
T ss_pred             HHHHHHHHHHHcCCCEEEEEcccCcCCCccccCHHHHHHHHhcCCCceEeEEEecCHHHHHHHHHHcCCcEEEecccccc
Confidence            56677888888999999986677652    11233444554 4667776633334 4 5599999999999999888777


Q ss_pred             CCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCH
Q 021156          167 NGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDD  246 (316)
Q Consensus       167 ~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~  246 (316)
                      +    +..+-+..+..| -+.-+++...                +.   .+....+.+ -++.+++..+.-.-..+.+..
T Consensus        95 ~----~~~~i~~i~~~g-~~~Gial~p~----------------T~---~~~~~~~l~-~id~vliM~V~pG~~Gq~f~~  149 (217)
T d2flia1          95 H----IHGALQKIKAAG-MKAGVVINPG----------------TP---ATALEPLLD-LVDQVLIMTVNPGFGGQAFIP  149 (217)
T ss_dssp             C----HHHHHHHHHHTT-SEEEEEECTT----------------SC---GGGGGGGTT-TCSEEEEESSCTTCSSCCCCG
T ss_pred             C----HHHHHHHHHhcC-CeEEEEecCC----------------cc---hhHHHhHHh-hcCEEEEEEEcCcccccccch
Confidence            6    766666666675 3455555432                11   112222322 389999988875433455543


Q ss_pred             ---HHHHHHhh-----cCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHHh
Q 021156          247 ---ELVALLGK-----YSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       247 ---eli~~l~~-----~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~~  309 (316)
                         +.++++++     ..++++.+-|||. .+.+..+.++|  ++.+++|+++  |... ++++..+.+++
T Consensus       150 ~~~~ki~~l~~~~~~~~~~~~I~vDGGIn-~~~i~~l~~aG--ad~~V~Gsai--f~~~-d~~~~i~~lr~  214 (217)
T d2flia1         150 ECLEKVATVAKWRDEKGLSFDIEVDGGVD-NKTIRACYEAG--ANVFVAGSYL--FKAS-DLVSQVQTLRT  214 (217)
T ss_dssp             GGHHHHHHHHHHHHHTTCCCEEEEESSCC-TTTHHHHHHHT--CCEEEESHHH--HTSS-CHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhcCCCeEEEEeCCCC-HHHHHHHHHCC--CCEEEEchHH--hCCC-CHHHHHHHHHH
Confidence               44555543     2468899999996 57899999999  9999999999  7544 66666555543

>d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.25  E-value=8.9e-06  Score=75.40  Aligned_cols=172  Identities=13%  Similarity=0.112  Sum_probs=108.1

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHH-h-CCCcEEEecCCC--H-HHHHHHHHcCCCEEEeCCeeecC
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALH-A-YPGGLQVGGGIN--S-DNSLSYIEEGATHVIVTSYVFNN  167 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~-~-~~~pl~vGGGIr--~-e~~~~~l~~Gad~VVigt~~~~~  167 (316)
                      .+| ++|..+.++|..  -++.............+..+ . ....+.+.-|++  . +.++.++++|+|.++|.++--..
T Consensus        56 ~~~-~mA~~ls~~Ggl--gvlhr~~~~~e~~~~~~~~~~~~~~~~v~aavGv~~~~~er~~~l~~agvd~ivID~A~G~s  132 (365)
T d1zfja1          56 TGS-KMAIAIARAGGL--GVIHKNMSITEQAEEVRKVKRSEGRLLVAAAVGVTSDTFERAEALFEAGADAIVIDTAHGHS  132 (365)
T ss_dssp             CSH-HHHHHHHHTTCE--EEECCSSCHHHHHHHHHHHHHHTSCBCCEEEECSSTTHHHHHHHHHHHTCSEEEECCSCTTC
T ss_pred             CCH-HHHHHHHHCCCc--eEEcCccCHHHHHHHhhhhhhccCceEEEEEeccCchHHHHHHHHHHcCCCEEEEECCcccc
Confidence            355 499999998733  33333322111222222222 2 233455556775  3 66999999999999998764332


Q ss_pred             CCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEe------ecCCcccc
Q 021156          168 GQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVH------GVDVEGKK  241 (316)
Q Consensus       168 ~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvt------di~~dG~~  241 (316)
                       +.-.+.++++.+.++ +..++.=.+                    -..+.++.+.+.|++.+.+-      ..++..+.
T Consensus       133 -~~~~~~i~~ik~~~~-~~~iIaGNV--------------------~T~e~a~~L~~aGaD~VkVGiG~Gs~CTTr~~tG  190 (365)
T d1zfja1         133 -AGVLRKIAEIRAHFP-NRTLIAGNI--------------------ATAEGARALYDAGVDVVKVGIGPGSICTTRVVAG  190 (365)
T ss_dssp             -HHHHHHHHHHHHHCS-SSCEEEEEE--------------------CSHHHHHHHHHTTCSEEEECSSCCTTBCHHHHTC
T ss_pred             -cchhHHHHHHHhhCC-Ccceeeccc--------------------ccHHHHHHHHhcCCceEEeeecccccccCcceee
Confidence             111456777776663 433332222                    12478889999999988652      12233333


Q ss_pred             CCC-CHHHHHHH---hhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          242 LGI-DDELVALL---GKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       242 ~G~-d~eli~~l---~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      -|. .+..+...   +...++|||+-||+++.-|+.+++.+|  ++.||+|+.|
T Consensus       191 vGvPq~sai~~~~~~~~~~~~~iIADGGi~~~GDi~KAla~G--Ad~VMlG~~l  242 (365)
T d1zfja1         191 VGVPQVTAIYDAAAVAREYGKTIIADGGIKYSGDIVKALAAG--GNAVMLGSMF  242 (365)
T ss_dssp             CCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTT--CSEEEESTTT
T ss_pred             eeccchhHHHHHHHHHHhCCceEEecCCcCcchhhhhhhhcc--CCEEEecchh
Confidence            343 45555444   345689999999999999999999999  8999999977

>d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Thiamin phosphate synthase
family: Thiamin phosphate synthase
domain: Thiamin phosphate synthase
species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]

Probab=98.20  E-value=3.2e-05  Score=65.67  Aligned_cols=159  Identities=17%  Similarity=0.071  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHcCCCcceEEEecCCcc----cHHHHHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCC
Q 021156           95 AAEFANLYKEDGLTGGHAIMLGADPL----SKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQM  170 (316)
Q Consensus        95 p~e~a~~~~~~G~~~l~lvDLda~~~----~~~~i~~~v~~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~  170 (316)
                      ..+.++...+.|++.+++=+=+....    --..+.+.++..+.++++..     +++-+.+.|++.|=+|.....    
T Consensus        19 ~~~~v~~~l~~Gv~~vqlR~k~~~~~e~~~~a~~l~~i~~~~~~~liind-----~~~lA~~~~adGvHl~~~~~~----   89 (206)
T d1xi3a_          19 EVESVREALEGGATAIQMRIKNAPTREMYEIGKTLRQLTREYDALFFVDD-----RVDVALAVDADGVQLGPEDMP----   89 (206)
T ss_dssp             HHHHHHHHHHTTCSEEEECCCSCCHHHHHHHHHHHHHHHHHTTCEEEEES-----CHHHHHHHTCSEEEECTTSCC----
T ss_pred             HHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEech-----hHHHHHhccCceEeecccccc----
Confidence            45677777778888766543333211    12234555566788998864     566677889999988765322    


Q ss_pred             CHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCcccc---CCCCHH
Q 021156          171 DLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKK---LGIDDE  247 (316)
Q Consensus       171 ~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~---~G~d~e  247 (316)
                       .    +..+..+++.+ +...+.                   + .+.++...+.|++.+.+-.+-...+.   ....++
T Consensus        90 -~----~~~~~~~~~~i-ig~s~h-------------------~-~~e~~~a~~~g~DYi~~gpvf~T~tk~~~~~~g~~  143 (206)
T d1xi3a_          90 -I----EVAKEIAPNLI-IGASVY-------------------S-LEEALEAEKKGADYLGAGSVFPTKTKEDARVIGLE  143 (206)
T ss_dssp             -H----HHHHHHCTTSE-EEEEES-------------------S-HHHHHHHHHHTCSEEEEECSSCC----CCCCCHHH
T ss_pred             -H----hhhhhcccccc-cccccC-------------------C-HHHHHHHHhcCCCEEEeccccccccccccccccHH
Confidence             2    23344555544 344442                   1 24567778889999988766433222   234899


Q ss_pred             HHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          248 LVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       248 li~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      .++++.+.+++||++-||| +.+++.++++.|  ++||.+.+++
T Consensus       144 ~l~~~~~~~~~Pv~AiGGI-~~~ni~~~~~~G--a~gvAvis~I  184 (206)
T d1xi3a_         144 GLRKIVESVKIPVVAIGGI-NKDNAREVLKTG--VDGIAVISAV  184 (206)
T ss_dssp             HHHHHHHHCSSCEEEESSC-CTTTHHHHHTTT--CSEEEESHHH
T ss_pred             HHHHHHHhcCCCEEEECCC-CHHHHHHHHHhC--CCEEEEhHHH
Confidence            9999999999999999999 668899999998  9999999999

>d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Thermotoga maritima [TaxId: 2336]

Probab=98.20  E-value=3.9e-05  Score=67.22  Aligned_cols=174  Identities=12%  Similarity=0.082  Sum_probs=111.9

Q ss_pred             ccCHHHHHHHHHHcCCCcceEEEecCC-cccHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCC
Q 021156           92 DKSAAEFANLYKEDGLTGGHAIMLGAD-PLSKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQ  169 (316)
Q Consensus        92 ~~~p~e~a~~~~~~G~~~l~lvDLda~-~~~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~  169 (316)
                      ..+|.++|+.|+ .|+..+-+.-=.-- ..+...+..+.+.+++|+.-===|- .-++.....+|||.|.+=...+.   
T Consensus        60 ~~d~~~~a~~ye-~GA~aiSVLTd~~~F~Gs~~~l~~vr~~~~~PiLrKDFIid~~QI~ea~~~GADaiLLI~~~L~---  135 (251)
T d1i4na_          60 DASLEDFIRMYD-ELADAISILTEKHYFKGDPAFVRAARNLTCRPILAKDFYIDTVQVKLASSVGADAILIIARILT---  135 (251)
T ss_dssp             TCCHHHHHHHHH-HHCSEEEEECCCSSSCCCTHHHHHHHTTCCSCEEEECCCCSTHHHHHHHHTTCSEEEEEGGGSC---
T ss_pred             CccHHHHHHHHh-cCCcceEEecccCCCCCCHHHHHHHhhcccCchhhhhhhhCHHHHHHHHhhccceEEeeccccc---
Confidence            358999999995 58775443311100 1234444444446788986655554 58899999999999888776665   


Q ss_pred             CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHH
Q 021156          170 MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELV  249 (316)
Q Consensus       170 ~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli  249 (316)
                        ++.++++.+..-    -..+|+-       |-++        +..|+-+.+...+++-+-++.++..-.  -.|.+..
T Consensus       136 --~~~l~~l~~~a~----~lgle~L-------vEvh--------~~~El~~al~~~~a~iiGINnRdL~t~--~vd~~~~  192 (251)
T d1i4na_         136 --AEQIKEIYEAAE----ELGMDSL-------VEVH--------SREDLEKVFSVIRPKIIGINTRDLDTF--EIKKNVL  192 (251)
T ss_dssp             --HHHHHHHHHHHH----TTTCEEE-------EEEC--------SHHHHHHHHTTCCCSEEEEECBCTTTC--CBCTTHH
T ss_pred             --HHHHHHHHHHHH----HhCCeee-------cccC--------CHHHHHHHhcccccceeeeeecchhcc--chhhhHH
Confidence              444555544321    0124442       2222        222333333456788887888876522  2355566


Q ss_pred             HHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCc
Q 021156          250 ALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGN  297 (316)
Q Consensus       250 ~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~  297 (316)
                      .++....  +..+|+.+||.+.+|+..+ +.|  ++++.||+++  +..+
T Consensus       193 ~~L~~~ip~~~~~IaESGI~~~~d~~~l-~~G--~davLIG~sL--m~~~  237 (251)
T d1i4na_         193 WELLPLVPDDTVVVAESGIKDPRELKDL-RGK--VNAVLVGTSI--MKAE  237 (251)
T ss_dssp             HHHGGGSCTTSEEEEESCCCCGGGHHHH-TTT--CSEEEECHHH--HHCS
T ss_pred             HHHHhhCCCCCEEEEcCCCCCHHHHHHH-HhC--CCEEEEChHH--hCCC
Confidence            6776554  5789999999999999887 466  9999999999  8766

>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.19  E-value=1.2e-05  Score=68.52  Aligned_cols=168  Identities=19%  Similarity=0.169  Sum_probs=110.5

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHH-hCCCcEEEe-cCCC-HHHHHHHHHcCCCEEEeCCeeecCCCC
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALH-AYPGGLQVG-GGIN-SDNSLSYIEEGATHVIVTSYVFNNGQM  170 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~-~~~~pl~vG-GGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~  170 (316)
                      +..++++.+.+.|++-+-+. |.  .++..+.++.++ ...-.+.+| |.|. .++++++.++||+.+|-       |-+
T Consensus        22 ~a~~~~~al~~~Gi~~iEit-lr--~p~a~~~i~~l~~~~~~~~~vGaGTV~~~~~~~~a~~aGa~fivs-------P~~   91 (202)
T d1wa3a1          22 EAKEKALAVFEGGVHLIEIT-FT--VPDADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVESGAEFIVS-------PHL   91 (202)
T ss_dssp             HHHHHHHHHHHTTCCEEEEE-TT--STTHHHHHHHTHHHHHTTCEEEEESCCSHHHHHHHHHHTCSEEEC-------SSC
T ss_pred             HHHHHHHHHHHcCCCEEEEe-cC--CccHHHHHHHHHHhcCCCcEEEecccccHHHHHHHHhhcccEEeC-------CCC
Confidence            56678888888887755543 22  233444444443 222236677 4555 59999999999999872       122


Q ss_pred             CHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHH
Q 021156          171 DLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVA  250 (316)
Q Consensus       171 ~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~  250 (316)
                      ++++++...+ .+ -..++.+-                     ++ ..+....+.|++.+=+.....-    |+  ..++
T Consensus        92 ~~~v~~~~~~-~~-i~~iPGv~---------------------Tp-sEi~~A~~~G~~~lK~fPa~~~----G~--~~lk  141 (202)
T d1wa3a1          92 DEEISQFCKE-KG-VFYMPGVM---------------------TP-TELVKAMKLGHTILKLFPGEVV----GP--QFVK  141 (202)
T ss_dssp             CHHHHHHHHH-HT-CEEECEEC---------------------SH-HHHHHHHHTTCCEEEETTHHHH----HH--HHHH
T ss_pred             cHHHHHHHHh-cC-CceeCCcC---------------------cH-HHHHHHHHCCCCEEEecchhhc----CH--HHHH
Confidence            3777766654 43 11222221                     23 4456667899998866665432    33  5788


Q ss_pred             HHhhc-CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHH
Q 021156          251 LLGKY-SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHA  308 (316)
Q Consensus       251 ~l~~~-~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~  308 (316)
                      .+... .++|++..||| +.+++.+.++.|  +.+|.+|+++  +.+.  ++++.+-.+
T Consensus       142 ~l~~p~p~i~~iptGGI-~~~n~~~~l~ag--a~avg~Gs~l--~~~~--~~~i~~~a~  193 (202)
T d1wa3a1         142 AMKGPFPNVKFVPTGGV-NLDNVCEWFKAG--VLAVGVGSAL--VKGT--PDEVREKAK  193 (202)
T ss_dssp             HHHTTCTTCEEEEBSSC-CTTTHHHHHHHT--CSCEEECHHH--HCSC--HHHHHHHHH
T ss_pred             HHhCcccCCcEEeeCCC-CHHHHHHHHHCC--CeEEEEchhh--cCCC--HHHHHHHHH
Confidence            88764 57999999999 689999999998  8999999999  8775  456655443

>d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 2,4-dienoyl-CoA reductase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.12  E-value=2.6e-05  Score=71.15  Aligned_cols=147  Identities=15%  Similarity=0.023  Sum_probs=99.4

Q ss_pred             HHHHHHHHcCCCEEEeCCe--------------eecC---C------CCCHHHHHHHHHHhcCceE-EEeeeeeecCCee
Q 021156          145 DNSLSYIEEGATHVIVTSY--------------VFNN---G------QMDLERLKDLVRVVGKQRL-VLDLSCRKKDGKY  200 (316)
Q Consensus       145 e~~~~~l~~Gad~VVigt~--------------~~~~---~------~~~~eli~ei~~~~G~~~I-vvslD~k~~~g~~  200 (316)
                      +.++++.++|+|-|=|-.+              .++|   |      ++..|.++.+.+++|++.+ .+-+...  +.  
T Consensus       145 ~aA~ra~~AGfDgVEIh~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eii~air~~vg~d~~v~~R~s~~--d~--  220 (330)
T d1ps9a1         145 RCAQLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSML--DL--  220 (330)
T ss_dssp             HHHHHHHHTTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEE--CC--
T ss_pred             HHHHHHHHhCcCeeeeccchHHHHHHHHHhhcccccccCCccHhhhhHHHHHHHHHHHHHcCCCceeEeccccc--cc--
Confidence            3466777899999988432              1222   1      2445788888888886543 2222221  11  


Q ss_pred             EEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCC--------ccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHH
Q 021156          201 AIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDV--------EGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADL  272 (316)
Q Consensus       201 ~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~--------dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi  272 (316)
                        .-.++.   .-+..++++.+++.|++.+-+..-..        .....|......+++++.+++||++.|++.+++++
T Consensus       221 --~~~g~~---~~~~~~~~~~l~~~g~d~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~a  295 (330)
T d1ps9a1         221 --VEDGGT---FAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHVSLPLVTTNRINDPQVA  295 (330)
T ss_dssp             --STTCCC---HHHHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTTTTHHHHHHHTTSCSSCEEECSSCCSHHHH
T ss_pred             --ccCCCC---HHHHHHHHHHHHHhhhhhhhcccccccccccccCCCCcchhHHHHHHHHHhhCCceEEEeCCCCCHHHH
Confidence              001221   12467888999999999875433111        11223556677888998899999999999999999


Q ss_pred             HHHHHhCCCcCEEEEccchhhccCcccHHHH
Q 021156          273 EKIKVAGIGRVDVTVGSALDIFGGNLAYKDV  303 (316)
Q Consensus       273 ~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~  303 (316)
                      .++++.| .+|.|.+||++  ..+|..++.+
T Consensus       296 e~~l~~g-~~D~V~~gR~~--iadP~~~~k~  323 (330)
T d1ps9a1         296 DDILSRG-DADMVSMARPF--LADAELLSKA  323 (330)
T ss_dssp             HHHHHTT-SCSEEEESTHH--HHCTTHHHHH
T ss_pred             HHHHHCC-CcchhHhhHHH--HhChhHHHHH
Confidence            9999998 58999999999  9888665554

>d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Thiamin phosphate synthase
family: Thiamin phosphate synthase
domain: Thiamin phosphate synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.10  E-value=7.3e-05  Score=64.48  Aligned_cols=163  Identities=18%  Similarity=0.105  Sum_probs=111.7

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCCccc-------HHHHHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeee
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGADPLS-------KAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVF  165 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~~~~-------~~~i~~~v~~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~  165 (316)
                      .+++++++...+.|++.+++=+=++....       -..+.+.+++.++++++-.     +++-+++.|||-|=+|....
T Consensus        30 ~~~~~~v~~al~~Gv~~iqlR~K~~~~~~~~~~~~~a~~l~~lc~~~~~~liInd-----~~~lA~~~~adGvHl~~~d~  104 (226)
T d2tpsa_          30 ADPVTVVQKALKGGATLYQFREKGGDALTGEARIKFAEKAQAACREAGVPFIVND-----DVELALNLKADGIHIGQEDA  104 (226)
T ss_dssp             SCHHHHHHHHHHHTCSEEEECCCSTTCCCHHHHHHHHHHHHHHHHHHTCCEEEES-----CHHHHHHHTCSEEEECTTSS
T ss_pred             cCHHHHHHHHHHCCCCEEEEcCCCccchhHHHHHHHHHHHHHHHHHhCCeEEEcC-----CHHHHhhccCCEEEeccccc
Confidence            57899999888889888777653332111       1234455566788898876     55666778999998887643


Q ss_pred             cCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccC---
Q 021156          166 NNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKL---  242 (316)
Q Consensus       166 ~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~---  242 (316)
                      .     +   .++.+.+| .. ++...+.                   + .+.++...+.|++.+.+-.+-...+..   
T Consensus       105 ~-----~---~~~r~~~~-~~-iig~S~h-------------------~-~~e~~~a~~~g~DYi~~gpvf~T~sK~~~~  154 (226)
T d2tpsa_         105 N-----A---KEVRAAIG-DM-ILGVSAH-------------------T-MSEVKQAEEDGADYVGLGPIYPTETKKDTR  154 (226)
T ss_dssp             C-----H---HHHHHHHT-TS-EEEEEEC-------------------S-HHHHHHHHHHTCSEEEECCSSCCCSSSSCC
T ss_pred             h-----h---hhhhhccc-ce-eeeeecc-------------------c-hHHHHHHHhCcCCeEEEecccccccccccc
Confidence            3     4   34445555 33 3445442                   1 255667778899999876653332322   


Q ss_pred             C-CCHHHHHHHhh-cCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhcc
Q 021156          243 G-IDDELVALLGK-YSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFG  295 (316)
Q Consensus       243 G-~d~eli~~l~~-~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~  295 (316)
                      . ..++.++.+.+ .+++||++-||| +.+++.++.+.|  ++|+.+.+++  +.
T Consensus       155 ~~~~~~~~~~~~~~~~~~Pv~AiGGI-~~~ni~~l~~~G--a~giAvis~I--~~  204 (226)
T d2tpsa_         155 AVQGVSLIEAVRRQGISIPIVGIGGI-TIDNAAPVIQAG--ADGVSMISAI--SQ  204 (226)
T ss_dssp             CCCTTHHHHHHHHTTCCCCEEEESSC-CTTTSHHHHHTT--CSEEEESHHH--HT
T ss_pred             cccccchhHHHHHhcCCCCEEEecCC-CHHHHHHHHHhC--CCEEEEhHHh--hc
Confidence            2 24667777754 578999999999 779999999998  9999999999  64

>d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.06  E-value=0.00014  Score=62.53  Aligned_cols=186  Identities=18%  Similarity=0.178  Sum_probs=121.5

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCc----ccHHHHHHHHH-hCCCcEEEecCCC-H-HHHHHHHHcCCCEEEeCCeeec
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADP----LSKAAAIEALH-AYPGGLQVGGGIN-S-DNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~----~~~~~i~~~v~-~~~~pl~vGGGIr-~-e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      +..+-.+.+.+.|++++|+==.|+..    .-....++.++ ..+.|+.+===+. . +-++.+.++|++.+.+-.+...
T Consensus        15 ~l~~ei~~l~~~~~d~iHiDimDg~Fvpn~t~~~~~i~~i~~~~~~~~dvHLMv~~p~~~i~~~~~~g~~~I~~H~E~~~   94 (220)
T d1h1ya_          15 NLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLRKHTKAYLDCHLMVTNPSDYVEPLAKAGASGFTFHIEVSR   94 (220)
T ss_dssp             GHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCBCHHHHHHHHTTCCSEEEEEEESSCGGGGHHHHHHHTCSEEEEEGGGCT
T ss_pred             HHHHHHHHHHHcCCCEEEEeeecCccccccccCchhhhhhhhhcchhhhhHHHhcchhhhhHHhhhcccceeeecccccc
Confidence            34456666677899999998888762    12234445555 4667776644443 4 5599999999999999887654


Q ss_pred             CCCCCHH-HHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHH-c-CCCEEEEeecCCccccCC
Q 021156          167 NGQMDLE-RLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLA-S-YADEFLVHGVDVEGKKLG  243 (316)
Q Consensus       167 ~~~~~~e-li~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~-~-Ga~~ilvtdi~~dG~~~G  243 (316)
                      +   ++. ++..+ +..| -+.-+++...                +.   .+....+.. . .++.+++..+.-....+.
T Consensus        95 ~---~~~~~i~~i-~~~g-~~~Glal~p~----------------t~---~~~~~~~l~~~~~~d~vlim~v~PG~~GQ~  150 (220)
T d1h1ya_          95 D---NWQELIQSI-KAKG-MRPGVSLRPG----------------TP---VEEVFPLVEAENPVELVLVMTVEPGFGGQK  150 (220)
T ss_dssp             T---THHHHHHHH-HHTT-CEEEEEECTT----------------SC---GGGGHHHHHSSSCCSEEEEESSCTTCSSCC
T ss_pred             h---hHHHHHHHH-HHcC-CCcceeeccc----------------cc---hhHHHHHHhcccccceEEEEecCCCCcccc
Confidence            3   243 34444 4454 2333444321                11   122233333 2 378899888877666777


Q ss_pred             CCH---HHHHHHhh-cCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHHh
Q 021156          244 IDD---ELVALLGK-YSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       244 ~d~---eli~~l~~-~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~~  309 (316)
                      ++.   +-++++++ ..++++.+=|||.. +.+..+.++|  ++.+++|+++  |... ++++..+.+++
T Consensus       151 f~~~~l~kI~~l~~~~~~~~I~VDGGIn~-~~i~~l~~aG--ad~~V~GS~i--f~~~-d~~~~i~~lr~  214 (220)
T d1h1ya_         151 FMPEMMEKVRALRKKYPSLDIEVDGGLGP-STIDVAASAG--ANCIVAGSSI--FGAA-EPGEVISALRK  214 (220)
T ss_dssp             CCGGGHHHHHHHHHHCTTSEEEEESSCST-TTHHHHHHHT--CCEEEESHHH--HTSS-CHHHHHHHHHH
T ss_pred             cchhhhHHHHHHHhcCCCceEEEEecCCH-HHHHHHHHCC--CCEEEECHHH--HCCC-CHHHHHHHHHH
Confidence            764   45555554 45789999999988 5899999999  9999999999  7543 55565554444

>d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Escherichia coli [TaxId: 562]

Probab=98.05  E-value=0.00011  Score=64.44  Aligned_cols=170  Identities=14%  Similarity=0.026  Sum_probs=112.6

Q ss_pred             ccCHHHHHHHHHHcCCCcceEEEecCC-cccHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCC
Q 021156           92 DKSAAEFANLYKEDGLTGGHAIMLGAD-PLSKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQ  169 (316)
Q Consensus        92 ~~~p~e~a~~~~~~G~~~l~lvDLda~-~~~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~  169 (316)
                      .-+|.++++ |.+.|+..+-+.-=..- ..+...+..+.+.+++|+.-===|- ..++.+...+|||.|.+=.+.+.   
T Consensus        67 ~~~p~~~a~-~~~~gA~aiSVLTe~~~F~Gs~~~l~~v~~~~~~PiLrKDFIid~~QI~ear~~GADavLLI~~~L~---  142 (254)
T d1piia2          67 DFDPARIAA-IYKHYASAISVLTDEKYFQGSFNFLPIVSQIAPQPILCKDFIIDPYQIYLARYYQADACLLMLSVLD---  142 (254)
T ss_dssp             SCCHHHHHH-HHTTTCSEEEEECCSTTTCCCTTHHHHHHHHCCSCEEEESCCCSHHHHHHHHHTTCSEEEEETTTCC---
T ss_pred             cchhHHHHH-HHHhccCceEEecccccCCCCHHHHHHHHhccccccchhcccCcHHHHHHHHhhccchhhhhHhhhc---
Confidence            458998876 66788775444311101 1233334444446788876544444 58899999999999888766665   


Q ss_pred             CCHHHHHHHH---HHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCH
Q 021156          170 MDLERLKDLV---RVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDD  246 (316)
Q Consensus       170 ~~~eli~ei~---~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~  246 (316)
                        ++.++++.   ..+|       +|+-       |-++         ..+.+....+.|++-|-++.++..-.  ..|.
T Consensus       143 --~~~l~~l~~~a~~lg-------l~~L-------VEvh---------~~~El~~a~~~~a~iIGINnRnL~tf--~vd~  195 (254)
T d1piia2         143 --DDQYRQLAAVAHSLE-------MGVL-------TEVS---------NEEEQERAIALGAKVVGINNRDLRDL--SIDL  195 (254)
T ss_dssp             --HHHHHHHHHHHHHTT-------CEEE-------EEEC---------SHHHHHHHHHTTCSEEEEESEETTTT--EECT
T ss_pred             --ccHHHHHHHHHHHHh-------hhHH-------Hhhc---------cHHHHHHHHhhcccccCccccchhhh--hhhh
Confidence              44445444   4455       4432       2222         13456677789999888888877522  2366


Q ss_pred             HHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCc
Q 021156          247 ELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGN  297 (316)
Q Consensus       247 eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~  297 (316)
                      +...++....  +..+++.+||++.+|+..+ ..|  ++++.||.++  ...+
T Consensus       196 ~~t~~L~~~ip~~~~~VsESGI~~~~d~~~l-~~g--~davLiGesl--m~~~  243 (254)
T d1piia2         196 NRTRELAPKLGHNVTVISESGINTYAQVREL-SHF--ANGFLIGSAL--MAHD  243 (254)
T ss_dssp             HHHHHHHHHHCTTSEEEEESCCCCHHHHHHH-TTT--CSEEEECHHH--HTCS
T ss_pred             HHHHHHHHhCCCCCEEEEcCCCCCHHHHHHH-HcC--CCEEEEChHH--hCCC
Confidence            6666665443  5678999999999999887 556  8999999999  8655

>d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: NADPH dehydrogenase NamA
species: Bacillus subtilis [TaxId: 1423]

Probab=98.03  E-value=2.4e-05  Score=71.53  Aligned_cols=148  Identities=13%  Similarity=0.034  Sum_probs=100.9

Q ss_pred             HHHHHHHHcCCCEEEeCCe--------------eecC---C------CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeE
Q 021156          145 DNSLSYIEEGATHVIVTSY--------------VFNN---G------QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYA  201 (316)
Q Consensus       145 e~~~~~l~~Gad~VVigt~--------------~~~~---~------~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~  201 (316)
                      +.++++.++|+|-|=|-.+              .++|   |      ++..|.++.+.+..+ ..+.+-+...  +.   
T Consensus       147 ~AA~ra~~AGfDGVEiH~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eiv~air~~~~-~~~~vr~~~~--~~---  220 (337)
T d1z41a1         147 QAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWD-GPLFVRVSAS--DY---  220 (337)
T ss_dssp             HHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCC-SCEEEEEECC--CC---
T ss_pred             HHHHHHHHcCCCeEEeeccCcceeeeecCCccccccccccchhhhhhhHHHHHHHHHhhhhc-ccceEEeccc--cc---
Confidence            3466777899999988532              1222   1      133466666666654 4444444332  10   


Q ss_pred             EEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCc----cccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHH
Q 021156          202 IVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVE----GKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKV  277 (316)
Q Consensus       202 v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~d----G~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~  277 (316)
                        ..+..+  .-+..++++.+.+.|++.+-++.-...    ....|++.++.+.+++.+++||++.|++.++++.+++++
T Consensus       221 --~~~g~~--~~~~~~~~~~l~~~g~d~~~~s~g~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~ae~~l~  296 (337)
T d1z41a1         221 --TDKGLD--IADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQADMATGAVGMITDGSMAEEILQ  296 (337)
T ss_dssp             --STTSCC--HHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCSHHHHHHHHH
T ss_pred             --ccCccc--hhhhHHHHHHHHHcCCcccccccccccccccccCCcccHHHHHHHHHhcCceEEEeCCcCCHHHHHHHHH
Confidence              111111  124677899999999998766443221    123467888999999999999999999999999999999


Q ss_pred             hCCCcCEEEEccchhhccCcccHHHHHH
Q 021156          278 AGIGRVDVTVGSALDIFGGNLAYKDVVA  305 (316)
Q Consensus       278 ~G~g~~gVivG~Al~~~~g~~~~~~~~~  305 (316)
                      .| .+|.|.+||++  ..+|-.++.+.+
T Consensus       297 ~g-~~D~V~~gR~~--iadPd~~~k~~~  321 (337)
T d1z41a1         297 NG-RADLIFIGREL--LRDPFFARTAAK  321 (337)
T ss_dssp             TT-SCSEEEECHHH--HHCTTHHHHHHH
T ss_pred             CC-CcceehhhHHH--HhCchHHHHHHh
Confidence            98 58999999999  999866655543

>d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus woesei [TaxId: 2262]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Archaeon Pyrococcus woesei [TaxId: 2262]

Probab=97.98  E-value=5.3e-05  Score=65.13  Aligned_cols=123  Identities=17%  Similarity=0.148  Sum_probs=79.7

Q ss_pred             HHHHHHHcCCCEEEeCCeeecCCCC--CHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHH
Q 021156          146 NSLSYIEEGATHVIVTSYVFNNGQM--DLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFL  223 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~~~~~~~~--~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~  223 (316)
                      .++.+.+.||+.+++|-.-++. .+  ..+.+.+.. +.| -..+++++-                      ....+.+.
T Consensus        79 s~~~l~~~g~~~~iiGHSErr~-~~~e~~~~i~~~~-~~g-l~~i~cv~~----------------------~~~~~~~~  133 (224)
T d1hg3a_          79 LPEAVKEAGAVGTLLNHSENRM-ILADLEAAIRRAE-EVG-LMTMVCSNN----------------------PAVSAAVA  133 (224)
T ss_dssp             CHHHHHHTTCCEEEESCGGGCC-BHHHHHHHHHHHH-HHT-CEEEEEESS----------------------HHHHHHHH
T ss_pred             chhhccccCcceeeeccccccc-cccchhHHHHHHH-HcC-Cceeechhh----------------------HHHHHhhh
Confidence            4777889999999999432221 00  012222222 222 122233221                      23456677


Q ss_pred             HcCCCEEEEeecCCccccCCC---CHHHH----HHHhh-cCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhcc
Q 021156          224 ASYADEFLVHGVDVEGKKLGI---DDELV----ALLGK-YSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFG  295 (316)
Q Consensus       224 ~~Ga~~ilvtdi~~dG~~~G~---d~eli----~~l~~-~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~  295 (316)
                      +.+...+-|-.+..-|+....   +.+.+    +.+.+ ..++||+++|||.+.+|...+.+.|  ++||.||+|.  ..
T Consensus       134 ~~~~~iiAyEpvwaIGtg~~~~~~~~~~i~~~i~~i~~~~~~v~vlygGsV~~~n~~~~~~~~g--~dGvLVGsAs--l~  209 (224)
T d1hg3a_         134 ALNPDYVAVEPPELIGTGIPVSKAKPEVITNTVELVKKVNPEVKVLCGAGISTGEDVKKAIELG--TVGVLLASGV--TK  209 (224)
T ss_dssp             TTCCSEEEECCTTTTTTSCCTTTSCTHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTT--CSEEEESHHH--HT
T ss_pred             hcccceEEecchHhhccccCCCchhhhhhhhhhhhhhhhccccceEEeCCcCCHHHHHHHHhCC--CCEEEEccee--ec
Confidence            778888888888887887554   33333    33333 2478999999999999999999998  9999999999  65


Q ss_pred             Cc
Q 021156          296 GN  297 (316)
Q Consensus       296 g~  297 (316)
                      -+
T Consensus       210 a~  211 (224)
T d1hg3a_         210 AK  211 (224)
T ss_dssp             CS
T ss_pred             Cc
Confidence            43

>d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.97  E-value=5.5e-05  Score=66.32  Aligned_cols=134  Identities=16%  Similarity=0.123  Sum_probs=88.3

Q ss_pred             CCCcEEEecCCCH------HH-HHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEe
Q 021156          132 YPGGLQVGGGINS------DN-SLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVT  204 (316)
Q Consensus       132 ~~~pl~vGGGIr~------e~-~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~  204 (316)
                      ..+|+..=|=.+.      ++ ++++.++|++-+++--...+.    .+.+.+..+++|-..| .-+.            
T Consensus        79 ~~~pivlm~Y~N~i~~~G~~~f~~~~~~~Gv~GliipDLP~eE----~~~~~~~~~~~gl~~I-~lva------------  141 (248)
T d1geqa_          79 SSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFH----AKEFTEIAREEGIKTV-FLAA------------  141 (248)
T ss_dssp             CCCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGG----HHHHHHHHHHHTCEEE-EEEC------------
T ss_pred             CCCcEEEEeccccccccCHHHHhhhhcccCeeEEeccCCcHHH----HHHHHhhccccCcceE-EEec------------
Confidence            5688877775541      33 677778999998886665544    5556666667762211 1111            


Q ss_pred             CCcceecccCHHHHHHHHHHcCCCEEEEeecC-CccccCCCC---HHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCC
Q 021156          205 DRWQKFSDVYLDERVLDFLASYADEFLVHGVD-VEGKKLGID---DELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGI  280 (316)
Q Consensus       205 ~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~-~dG~~~G~d---~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~  280 (316)
                             .....+.++...+..-+.+-+..+. ..|......   .+.++++++.++.|+.++-||++++|++++.+.+ 
T Consensus       142 -------Ptt~~~ri~~i~~~s~gFiY~vs~~GvTG~~~~~~~~~~~~v~~vk~~t~~Pv~vGFGI~~~e~v~~~~~~~-  213 (248)
T d1geqa_         142 -------PNTPDERLKVIDDMTTGFVYLVSLYGTTGAREEIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEG-  213 (248)
T ss_dssp             -------TTCCHHHHHHHHHHCSSEEEEECCC-------CCCHHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTT-
T ss_pred             -------ccchhHHHHHHHhcCCCeEEEEecccccccchhhhhhHHHHHHHHhhhcccceeeecccCCHHHHHHHHhcC-
Confidence                   1123466666666655555443332 223333332   4578888888999999999999999999999887 


Q ss_pred             CcCEEEEccch
Q 021156          281 GRVDVTVGSAL  291 (316)
Q Consensus       281 g~~gVivG~Al  291 (316)
                       +||||||||+
T Consensus       214 -ADGvIVGSai  223 (248)
T d1geqa_         214 -ANGVVVGSAL  223 (248)
T ss_dssp             -CSEEEECHHH
T ss_pred             -CCEEEECHHH
Confidence             8999999999

>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.96  E-value=3.9e-05  Score=67.99  Aligned_cols=134  Identities=13%  Similarity=0.057  Sum_probs=90.7

Q ss_pred             CCCcEEEecCCC------HHH-HHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEe
Q 021156          132 YPGGLQVGGGIN------SDN-SLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVT  204 (316)
Q Consensus       132 ~~~pl~vGGGIr------~e~-~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~  204 (316)
                      ...|+.+=+=.+      .++ ++++.++|++-+++--...+.    -+.+.+..+++|-+.| .-+.            
T Consensus        93 ~~~pivlm~Y~N~i~~~G~~~f~~~~~~~Gv~GliipDlP~ee----~~~~~~~~~~~~l~~I-~lva------------  155 (267)
T d1qopa_          93 PTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEE----SAPFRQAALRHNIAPI-FICP------------  155 (267)
T ss_dssp             SSSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEETTCCGGG----CHHHHHHHHHTTCEEE-CEEC------------
T ss_pred             cccceEEEeeccchhhcCchHHHHHHHhcCCCceeccchhhhh----hHHHHHhhhccCceEE-EEec------------
Confidence            368998888554      233 778889999998886665543    4556677777762211 1111            


Q ss_pred             CCcceecccCHHHHHHHHHHcCCCEEEEeecC-CccccCCC--C-HHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCC
Q 021156          205 DRWQKFSDVYLDERVLDFLASYADEFLVHGVD-VEGKKLGI--D-DELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGI  280 (316)
Q Consensus       205 ~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~-~dG~~~G~--d-~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~  280 (316)
                             .....+.++...+..-+.+-+-.+. ..|.....  + .+.++++++.+++|+.++.||++++|+.++.+.+ 
T Consensus       156 -------Ptt~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pv~vGFGI~~~e~v~~~~~~~-  227 (267)
T d1qopa_         156 -------PNADDDLLRQVASYGRGYTYLLSRSGVTGAENRGALPLHHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAG-  227 (267)
T ss_dssp             -------TTCCHHHHHHHHHHCCSCEEEESSSSCCCSSSCC--CCHHHHHHHHHTTCCCEEEESSCCSHHHHHHHHHTT-
T ss_pred             -------ccccHHHHHHHHhhCchhhhhhcccccCCcccccchhHHHHHHHHhhhccCCceeecccCCHHHHHHHHhcC-
Confidence                   1123456666666655544333332 12332222  2 4689999999999999999999999999998887 


Q ss_pred             CcCEEEEccch
Q 021156          281 GRVDVTVGSAL  291 (316)
Q Consensus       281 g~~gVivG~Al  291 (316)
                       +||||||||+
T Consensus       228 -ADGvIVGSAi  237 (267)
T d1qopa_         228 -AAGAISGSAI  237 (267)
T ss_dssp             -CSEEEECHHH
T ss_pred             -CCEEEECHHH
Confidence             8999999998

>d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: ThiG-like
family: ThiG-like
domain: Thiazole biosynthesis protein ThiG
species: Bacillus subtilis [TaxId: 1423]

Probab=97.92  E-value=1.4e-05  Score=69.36  Aligned_cols=84  Identities=12%  Similarity=0.087  Sum_probs=70.8

Q ss_pred             HHHHHHHHcCCCEEEEeecCCccccCCC-CHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhcc
Q 021156          217 ERVLDFLASYADEFLVHGVDVEGKKLGI-DDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFG  295 (316)
Q Consensus       217 e~a~~~~~~Ga~~ilvtdi~~dG~~~G~-d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~  295 (316)
                      -.++++++.||..+.-.. +--|+.+|+ |.+.++.+.+..++|||+-+||+++.|...+.++|  +++|++++|+..-.
T Consensus       137 v~ak~Le~~Gc~avMPlg-sPIGSg~Gl~n~~~l~~i~~~~~vPvIvDAGIG~pSdAa~AMElG--~daVLvNTAIA~a~  213 (251)
T d1xm3a_         137 VLARKLEELGVHAIMPGA-SPIGSGQGILNPLNLSFIIEQAKVPVIVDAGIGSPKDAAYAMELG--ADGVLLNTAVSGAD  213 (251)
T ss_dssp             HHHHHHHHHTCSCBEECS-SSTTCCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHTT--CSEEEESHHHHTSS
T ss_pred             HHHHHHHHcCChhHHHhh-hhhhcCCCcCChHHHHHHHhcCCccEEEecCCCCHHHHHHHHHcc--CCEEEechhhhcCC
Confidence            689999999999764332 567999999 99999999988999999999999999999999999  99999999994445


Q ss_pred             CcccHHHH
Q 021156          296 GNLAYKDV  303 (316)
Q Consensus       296 g~~~~~~~  303 (316)
                      +|....++
T Consensus       214 dPv~MA~A  221 (251)
T d1xm3a_         214 DPVKMARA  221 (251)
T ss_dssp             SHHHHHHH
T ss_pred             CHHHHHHH
Confidence            55544444

>d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: ThiG-like
family: ThiG-like
domain: Thiazole biosynthesis protein ThiG
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.92  E-value=2.8e-05  Score=67.67  Aligned_cols=80  Identities=16%  Similarity=0.113  Sum_probs=67.9

Q ss_pred             HHHHHHHHcCCCEEEEeecCCccccCCC-CHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhcc
Q 021156          217 ERVLDFLASYADEFLVHGVDVEGKKLGI-DDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFG  295 (316)
Q Consensus       217 e~a~~~~~~Ga~~ilvtdi~~dG~~~G~-d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~  295 (316)
                      -.++++++.|+..+. .--+.-|+.+|. |...++.+.+..++|||+.+||+++.|+..+.++|  ++||.+++|++.-.
T Consensus       139 v~ak~le~~Gc~~vM-plgsPIGsg~Gi~n~~~l~~i~~~~~vpvivdAGIg~psdaa~AMElG--~dgVLvnsaIa~A~  215 (243)
T d1wv2a_         139 IIARQLAEIGCIAVM-PLAGLIGSGLGICNPYNLRIILEEAKVPVLVDAGVGTASDAAIAMELG--CEAVLMNTAIAHAK  215 (243)
T ss_dssp             HHHHHHHHSCCSEEE-ECSSSTTCCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHHT--CSEEEESHHHHTSS
T ss_pred             HHHhHHHHcCceeee-ecccccccccccccHHHHHhccccCCcceEeecccCCHHHHHHHHHcc--CCEEEechHhhcCC
Confidence            588999999999653 334667899999 88889988888999999999999999999999999  99999999994444


Q ss_pred             Cccc
Q 021156          296 GNLA  299 (316)
Q Consensus       296 g~~~  299 (316)
                      +|..
T Consensus       216 dP~~  219 (243)
T d1wv2a_         216 DPVM  219 (243)
T ss_dssp             SHHH
T ss_pred             CHHH
Confidence            4433

>d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Trimethylamine dehydrogenase, N-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.90  E-value=9e-05  Score=67.62  Aligned_cols=147  Identities=18%  Similarity=0.118  Sum_probs=97.6

Q ss_pred             HHHHHHHcCCCEEEeCCe----------eecC-------C------CCCHHHHHHHHHHhcCceE-EEeeeeeecCCeeE
Q 021156          146 NSLSYIEEGATHVIVTSY----------VFNN-------G------QMDLERLKDLVRVVGKQRL-VLDLSCRKKDGKYA  201 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~----------~~~~-------~------~~~~eli~ei~~~~G~~~I-vvslD~k~~~g~~~  201 (316)
                      .++++.++|+|-|=|-.+          ...|       |      ++..|.++++.+.+|++.+ .+-+...  +    
T Consensus       154 aA~~a~~aGfDgVEih~ahGyLl~qFls~~~N~R~D~yGGs~enR~Rf~~EIi~aIr~~vg~~~~i~~R~s~~--~----  227 (340)
T d1djqa1         154 AAKRSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVD--T----  227 (340)
T ss_dssp             HHHHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEE--C----
T ss_pred             HHHHHHHhccceeeeeccccchhhhhhhhccccccccccccHHhhhHHHHHHHHHHHHHHhhhhhceeecccc--c----
Confidence            467778899999877542          1111       1      2445888888888986643 2222211  0    


Q ss_pred             EEeCCcceecccCHHHHHHHHHHcCCCEEEEeecC--C--------ccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHH
Q 021156          202 IVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVD--V--------EGKKLGIDDELVALLGKYSPIPVTYAGGVTTMAD  271 (316)
Q Consensus       202 v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~--~--------dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eD  271 (316)
                       ...++....+ .....+..+.+.+++.+-++..+  .        .....|..+++.+.+++.+++|||++||+.++++
T Consensus       228 -~~~~~~~~~e-~~~~~~~~l~~~~vd~~~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~G~i~~~~~  305 (340)
T d1djqa1         228 -VYGPGQIEAE-VDGQKFVEMADSLVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVSKKPVLGVGRYTDPEK  305 (340)
T ss_dssp             -SSCTTSCCTT-THHHHHHHHHTTTCSEEEEEESCSTTGGGTSCCTTTCCTTTTHHHHHHHHTTCSSCEEECSCCCCHHH
T ss_pred             -cccCCCCchh-hhHHHHHHHHhhccceeeeeecccccccccccccccCCccccHHHHHHHHHHcCCeEEEECCCCCHHH
Confidence             0111221122 23345667888899977544321  1        1112466788889999999999999999999999


Q ss_pred             HHHHHHhCCCcCEEEEccchhhccCcccHHHH
Q 021156          272 LEKIKVAGIGRVDVTVGSALDIFGGNLAYKDV  303 (316)
Q Consensus       272 i~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~  303 (316)
                      +.++++.| .+|.|.+||++  +.+|-.++.+
T Consensus       306 a~~~l~~G-~aDlV~~gR~~--iadPdl~~k~  334 (340)
T d1djqa1         306 MIEIVTKG-YADIIGCARPS--IADPFLPQKV  334 (340)
T ss_dssp             HHHHHHTT-SCSBEEESHHH--HHCTTHHHHH
T ss_pred             HHHHHHCC-CccchhhHHHH--HHCccHHHHH
Confidence            99999998 48999999999  9888655544

>d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Tritrichomonas foetus [TaxId: 5724]

Probab=97.88  E-value=6.7e-05  Score=69.25  Aligned_cols=170  Identities=16%  Similarity=0.057  Sum_probs=103.9

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCcc--cHHHHHHHHHhCCCcEEEecCCC-H-HHHHHHHHcCCCEEEeCCeeecCCC
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADPL--SKAAAIEALHAYPGGLQVGGGIN-S-DNSLSYIEEGATHVIVTSYVFNNGQ  169 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~~--~~~~i~~~v~~~~~pl~vGGGIr-~-e~~~~~l~~Gad~VVigt~~~~~~~  169 (316)
                      ++ ++|..+.+.|..+  ++  ..-..  .........+........++... . +.++.+.++|++.+++.++--....
T Consensus        63 ~~-~mA~~la~~Gglg--vi--hR~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ag~d~i~IDvAhG~~~~  137 (362)
T d1pvna1          63 GE-KMAIALAREGGIS--FI--FGSQSIESQAAMVHAVKNFRYLVGAGINTRDFRERVPALVEAGADVLCIDSSDGFSEW  137 (362)
T ss_dssp             SH-HHHHHHHHTTCEE--EE--CCSSCHHHHHHHHHHHHTCCCCCEEEECSSSHHHHHHHHHHHTCSEEEECCSCCCBHH
T ss_pred             CH-HHHHHHHHCCCEE--EE--eecCCHHHHHHHhhhhhhcccccccccchhhhHHHHHHHhhcCceEEeechhccchhH
Confidence            44 4899999887322  22  12111  12222233333333444555554 4 6689999999999999887543211


Q ss_pred             CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEe------ecCCccccCC
Q 021156          170 MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVH------GVDVEGKKLG  243 (316)
Q Consensus       170 ~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvt------di~~dG~~~G  243 (316)
                       -.+.++.+.+.+++...++.=.+-                    ..|.++.+.+.|++.+.+=      ..++.-+.-|
T Consensus       138 -v~~~i~~ir~~~~~~~~IiAGNVa--------------------T~e~~~~L~~aGaD~vkVGIG~Gs~CTTr~~tGvG  196 (362)
T d1pvna1         138 -QKITIGWIREKYGDKVKVGAGNIV--------------------DGEGFRYLADAGADFIKIGIGGGSICITREQKGIG  196 (362)
T ss_dssp             -HHHHHHHHHHHHGGGSCEEEEEEC--------------------SHHHHHHHHHHTCSEEEECSSCSTTBCHHHHTCBC
T ss_pred             -HHHHHHHHHHhhccceeeeccccc--------------------CHHHHHHHHHhCCcEEEecccccccccchhhhccC
Confidence             145667776667543323322221                    2367888999999987531      1122222223


Q ss_pred             C-CHHHHHHHhhc---------CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          244 I-DDELVALLGKY---------SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       244 ~-d~eli~~l~~~---------~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      . -+..+.++++.         .++|||+-||+++..|+.+++.+|  ++.||+|+.|
T Consensus       197 ~Pq~sAv~e~a~~~~~~~~~~~~~v~iiaDGGi~~~gdi~KAla~G--Ad~VM~G~~l  252 (362)
T d1pvna1         197 RGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAMG--ADFIMLGRYF  252 (362)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHHHTT--CSEEEESHHH
T ss_pred             CchHHHHHHHHHHHHHhhhhcccCCceeeccccCcccceeEEEEEe--ccceeehhhh
Confidence            3 44555554321         358999999999999999999999  8999999877

>d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.86  E-value=0.00013  Score=64.23  Aligned_cols=168  Identities=19%  Similarity=0.194  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHcCCCcceEEEec-------CCc--------------ccHHHHHHHH---H-hCCCcEEEecCCC-H-HH-
Q 021156           95 AAEFANLYKEDGLTGGHAIMLG-------ADP--------------LSKAAAIEAL---H-AYPGGLQVGGGIN-S-DN-  146 (316)
Q Consensus        95 p~e~a~~~~~~G~~~l~lvDLd-------a~~--------------~~~~~i~~~v---~-~~~~pl~vGGGIr-~-e~-  146 (316)
                      -.++++.+.+.|++-   +-|.       ++.              .+...+.+.+   + ....|+.+=+-.+ . .. 
T Consensus        33 ~~~~l~~l~~~G~Di---iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~n~~~~~~  109 (261)
T d1rd5a_          33 TAEALRLLDGCGADV---IELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCPVVLLSYYKPIMFRS  109 (261)
T ss_dssp             HHHHHHHHHHTTCSS---EEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGCSSCEEEECCSHHHHSCC
T ss_pred             HHHHHHHHHHcCCCE---EEECCCCCCcCcCCcceeeeeeeccccCcchhhhhhhhhcccccccCceeeeeeecchhhHH
Confidence            347888888888773   3332       111              1233333333   2 3668888888876 3 22 


Q ss_pred             HHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcC
Q 021156          147 SLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASY  226 (316)
Q Consensus       147 ~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~G  226 (316)
                      ++++.++|++-+++=-...+.    .+.+.+..+++|-..| .-           +        +.....+.+++..+..
T Consensus       110 ~~~~~~~GvdG~IipDlp~eE----~~~~~~~~~~~gl~~I-~l-----------v--------aPtt~~~Ri~~i~~~a  165 (261)
T d1rd5a_         110 LAKMKEAGVHGLIVPDLPYVA----AHSLWSEAKNNNLELV-LL-----------T--------TPAIPEDRMKEITKAS  165 (261)
T ss_dssp             THHHHHTTCCEEECTTCBTTT----HHHHHHHHHHTTCEEC-EE-----------E--------CTTSCHHHHHHHHHHC
T ss_pred             HHHHHhcCceeeeecCccHHH----HHHHHHHHhccccceE-EE-----------e--------ccCCchhHHHHHHhcC
Confidence            777888999998886555543    5555666666762111 11           1        1112345666666665


Q ss_pred             CCEEEEeec-CCccccCCC--C-HHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          227 ADEFLVHGV-DVEGKKLGI--D-DELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       227 a~~ilvtdi-~~dG~~~G~--d-~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      -+.+-+..+ -..|.....  + .+.++++++.+++|+.++.||++++|++++.+.|  +||||||+|+
T Consensus       166 ~gFvY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pi~vGFGI~~~e~v~~~~~~g--aDGvIVGSai  232 (261)
T d1rd5a_         166 EGFVYLVSVNGVTGPRANVNPRVESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWG--ADGVIIGSAM  232 (261)
T ss_dssp             CSCEEEECSSCCBCTTSCBCTHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTT--CSEEEECHHH
T ss_pred             cchhhhhhccCcccccccchhHHHHHHHHhhhccCCCeEEEcCCCCHHHHHHHHhcC--CCEEEECHHH
Confidence            454433222 222332222  2 3578888888999999999999999999999988  8999999998

>d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]

Probab=97.85  E-value=3.4e-05  Score=71.92  Aligned_cols=123  Identities=15%  Similarity=0.132  Sum_probs=84.3

Q ss_pred             HHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHH
Q 021156          145 DNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLA  224 (316)
Q Consensus       145 e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~  224 (316)
                      +.++.+.++|+|.++|.++--.. +.-.++++.+.+.|+ +-.++.=.+                    -..+.++.+.+
T Consensus       154 ~ra~~L~~aG~D~ivID~AhG~s-~~~~~~i~~ik~~~~-~v~vIaGNV--------------------~T~e~a~~L~~  211 (388)
T d1eepa_         154 ERVEELVKAHVDILVIDSAHGHS-TRIIELIKKIKTKYP-NLDLIAGNI--------------------VTKEAALDLIS  211 (388)
T ss_dssp             HHHHHHHHTTCSEEEECCSCCSS-HHHHHHHHHHHHHCT-TCEEEEEEE--------------------CSHHHHHHHHT
T ss_pred             HHHHHHHhhccceeeeeccccch-HHHHHHHHHHHHHCC-CCceeeccc--------------------cCHHHHHHHHh
Confidence            67999999999999999875432 111456666666663 322222211                    23478899999


Q ss_pred             cCCCEEEEe------ecCCccccCCC-CHHHHHHHh---hcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          225 SYADEFLVH------GVDVEGKKLGI-DDELVALLG---KYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       225 ~Ga~~ilvt------di~~dG~~~G~-d~eli~~l~---~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      .|++.+.+-      ..++.-+.-|. -+..+....   ....+|||+-|||++.-|+.+++.+|  ++.||+|+.+
T Consensus       212 ~GaD~VkVGiGpGs~CtTr~~~GvG~pq~sai~~~~~~~~~~~vpiIADGGi~~~Gdi~KAla~G--Ad~VMlG~~l  286 (388)
T d1eepa_         212 VGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAG--ADSVMIGNLF  286 (388)
T ss_dssp             TTCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHHHT--CSEEEECHHH
T ss_pred             cCCCeeeeccccccccccccccccCcchHHHHHHHHHHhccCCceEEeccccCcCCceeeeEEec--cceeecchhh
Confidence            999988541      11222333333 455554443   34589999999999999999999999  8999999977

>d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Thermoproteus tenax [TaxId: 2271]

Probab=97.83  E-value=8.7e-05  Score=63.92  Aligned_cols=135  Identities=18%  Similarity=0.163  Sum_probs=89.0

Q ss_pred             HHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCc--eEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHH
Q 021156          146 NSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQ--RLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFL  223 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~--~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~  223 (316)
                      ..+.+.+.|++.+++|=.-++.   ..+-+.+..+..-..  .+++++.                     + .+.+....
T Consensus        77 s~~~l~~~g~~~viigHsErR~---~~~e~~~~~~~~~~~gl~~ivcvg---------------------e-~~~~~~~~  131 (226)
T d1w0ma_          77 SLENIKEAGGSGVILNHSEAPL---KLNDLARLVAKAKSLGLDVVVCAP---------------------D-PRTSLAAA  131 (226)
T ss_dssp             BHHHHHHHTCCEEEECCTTSCC---BHHHHHHHHHHHHHTTCEEEEEES---------------------S-HHHHHHHH
T ss_pred             eHhhhcccccceEEeechhhhh---hccchHHHHHHHHHcCCEEEEecC---------------------c-hHHhhhhh
Confidence            4778888999999998643321   133333333322111  2233332                     1 23456677


Q ss_pred             HcCCCEEEEeecCCccccCCCC---HHHH----HHHhhc-CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhcc
Q 021156          224 ASYADEFLVHGVDVEGKKLGID---DELV----ALLGKY-SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFG  295 (316)
Q Consensus       224 ~~Ga~~ilvtdi~~dG~~~G~d---~eli----~~l~~~-~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~  295 (316)
                      +.+...+.|-.+..-|+...++   .+.+    +.+.+. .++||+++|||.+.+|...+.+.|  ++||+||+|.  ..
T Consensus       132 ~~~~~iIayep~waIGtg~~~~~~~~~~i~~~i~~~~~~~~~i~vlygGgV~~~n~~~~~~~~g--~dGvLVGsA~--l~  207 (226)
T d1w0ma_         132 ALGPHAVAVEPPELIGTGRAVSRYKPEAIVETVGLVSRHFPEVSVITGAGIESGDDVAAALRLG--TRGVLLASAA--VK  207 (226)
T ss_dssp             HTCCSEEEECCGGGTTTSCCHHHHCHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTT--CSEEEECHHH--HT
T ss_pred             ccccceeeecchhhccCCCCCChhhhhHhhhhhhhhhccCCCceEEEecCcCChHHHHHHhcCC--CCEEEechhe--ec
Confidence            8889989899998888877653   3332    333332 479999999999999999999998  9999999999  65


Q ss_pred             CcccHHHHHHHHHh
Q 021156          296 GNLAYKDVVAWHAQ  309 (316)
Q Consensus       296 g~~~~~~~~~~~~~  309 (316)
                      -+=++..+.++.++
T Consensus       208 a~d~~~~i~~l~~~  221 (226)
T d1w0ma_         208 AKDPYAKIVELAKP  221 (226)
T ss_dssp             CSSHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHH
Confidence            44345555555543

>d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=97.82  E-value=0.0004  Score=59.99  Aligned_cols=187  Identities=18%  Similarity=0.138  Sum_probs=120.5

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCc-c---cHHHHHHHHH-hCCCcEEEecCCC-H-HHHHHHHHcCCCEEEeCCeeec
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADP-L---SKAAAIEALH-AYPGGLQVGGGIN-S-DNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~-~---~~~~i~~~v~-~~~~pl~vGGGIr-~-e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      +-.+..+.+.++|++++|+==.|+.. +   -...+++.++ ....|+.+===+. . +-++.+.++|++.+++-.+...
T Consensus        24 ~l~~~i~~l~~~g~d~iHiDImDG~Fvpn~t~~~~~v~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~~~i~~H~E~~~  103 (230)
T d1rpxa_          24 KLGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSS  103 (230)
T ss_dssp             GHHHHHHHHHHTTCCCEEEEEEBSSSSSCBCCCHHHHHHHGGGCCSCEEEEEESSSHHHHHHHHHHTTCSEEEEECSTTT
T ss_pred             HHHHHHHHHHHcCCCEEEEeCccCCcCCccccChHHHhhhhhccCceeeeeeeecchhhhHHHHhhcccceeEEeccccc
Confidence            45567777888899999998888762 1   2334455554 4566766655554 5 5599999999999999876433


Q ss_pred             CCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCH
Q 021156          167 NGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDD  246 (316)
Q Consensus       167 ~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~  246 (316)
                      .  .++..+-...+..| -++-+++.-.                +   +.+.++.+.+ -++.+++..+.---..+.+..
T Consensus       104 ~--~~~~~~i~~ik~~g-~k~Gialnp~----------------T---~~~~l~~~l~-~vD~VllM~V~PGf~GQ~f~~  160 (230)
T d1rpxa_         104 T--IHLHRTINQIKSLG-AKAGVVLNPG----------------T---PLTAIEYVLD-AVDLVLIMSVNPGFGGQSFIE  160 (230)
T ss_dssp             C--SCHHHHHHHHHHTT-SEEEEEECTT----------------C---CGGGGTTTTT-TCSEEEEESSCTTCSSCCCCT
T ss_pred             c--ccHHHHHHHHHHcC-CeEEEEeCCC----------------C---CHHHHHHHHh-hCCEEEEEEecCCcccchhhh
Confidence            2  11443333334455 3444455421                1   1223333433 389999988875333455654


Q ss_pred             HHHHHHhh--------cCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHHh
Q 021156          247 ELVALLGK--------YSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       247 eli~~l~~--------~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~~  309 (316)
                      +.++++++        ..++.+.+=|||.. +.+..+.++|  ++.+++|+++  |..+ ++++..+.+++
T Consensus       161 ~~~~kI~~~~~~~~~~~~~~~I~vDGGIn~-~~i~~l~~~G--ad~~V~GS~i--f~~~-d~~~~i~~lk~  225 (230)
T d1rpxa_         161 SQVKKISDLRKICAERGLNPWIEVDGGVGP-KNAYKVIEAG--ANALVAGSAV--FGAP-DYAEAIKGIKT  225 (230)
T ss_dssp             THHHHHHHHHHHHHHHTCCCEEEEESSCCT-TTHHHHHHHT--CCEEEESHHH--HTSS-CHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHhcCCceEEEEECCcCH-HHHHHHHHcC--CCEEEEChHH--HCCC-CHHHHHHHHHH
Confidence            44443322        24688999999987 5899999999  9999999999  7654 56666665554

>d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.77  E-value=0.00013  Score=67.57  Aligned_cols=122  Identities=17%  Similarity=0.192  Sum_probs=82.5

Q ss_pred             HHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHH
Q 021156          145 DNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLA  224 (316)
Q Consensus       145 e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~  224 (316)
                      +.++.+.++|++.+++..+.-.. +.-.+.++.+.+.+ ++..++.=.+                    -..+.++.+.+
T Consensus       122 ~~~~~l~~agv~vi~id~a~g~~-~~~~~~i~~ik~~~-~~~~iIaGnV--------------------aT~e~a~~L~~  179 (378)
T d1jr1a1         122 YRLDLLALAGVDVVVLDSSQGNS-IFQINMIKYMKEKY-PNLQVIGGNV--------------------VTAAQAKNLID  179 (378)
T ss_dssp             HHHHHHHHHTCCEEEECCSSCCS-HHHHHHHHHHHHHS-TTCEEEEEEE--------------------CSHHHHHHHHH
T ss_pred             HHHHHHHhhccceEeeeccCccc-hhhHHHHHHHHHHC-CCCceeeccc--------------------ccHHHHHHHHH
Confidence            34777888999999998775432 10134555665555 3333332222                    13477889999


Q ss_pred             cCCCEEEEeecCCccccC-------C-CCHHHHHHH---hhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          225 SYADEFLVHGVDVEGKKL-------G-IDDELVALL---GKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       225 ~Ga~~ilvtdi~~dG~~~-------G-~d~eli~~l---~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      .|++.+.+ .+..-+...       | |.+..+..+   ++..++|||+.|||++..|+.+++.+|  +++||+|+.+
T Consensus       180 aGAD~VkV-GiG~Gs~ctTr~~tGvG~pq~sai~~~~~~a~~~~vpIIADGGi~~~gdiakAla~G--Ad~VMmGs~f  254 (378)
T d1jr1a1         180 AGVDALRV-GMGCGSICITQEVLACGRPQATAVYKVSEYARRFGVPVIADGGIQNVGHIAKALALG--ASTVMMGSLL  254 (378)
T ss_dssp             HTCSEEEE-CSSCSTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTT--CSEEEESTTT
T ss_pred             hCCCEEee-ccccccccccccccccCcccchhhhHHHHhhcccCCceecccccccCCceeeEEEee--cceeeeccee
Confidence            99998865 332222222       3 345554444   455689999999999999999999999  9999999987

>d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Lactococcus lactis, isozyme A [TaxId: 1358]

Probab=97.73  E-value=0.00013  Score=65.21  Aligned_cols=147  Identities=16%  Similarity=0.056  Sum_probs=90.0

Q ss_pred             HHHHHHcC-CCEEEeCCeeecCC-----CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHH
Q 021156          147 SLSYIEEG-ATHVIVTSYVFNNG-----QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVL  220 (316)
Q Consensus       147 ~~~~l~~G-ad~VVigt~~~~~~-----~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~  220 (316)
                      ++.+.+++ ++.+-++-..-+..     ..+++.+.++.+..- ...-..+         .++...+...  .+....++
T Consensus       112 ~~~~~~~~~ad~ielNiscPn~~~~~~~~~~~~~~~~~~~~v~-~~~~~pv---------~vKl~p~~~~--~~~~~~~~  179 (311)
T d1juba_         112 LKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVF-TFFTKPL---------GVKLPPYFDL--VHFDIMAE  179 (311)
T ss_dssp             HHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHT-TTCCSCE---------EEEECCCCSH--HHHHHHHH
T ss_pred             HHHHhhccccceeeeccccccccccccccccHHHHHHHHHHhh-cccccce---------eecccccchh--hHHHHHHH
Confidence            44445555 78877765443321     125788888877762 2221222         2333332211  12445677


Q ss_pred             HHHHcCCCEEEEee---------cCCc----------cccCCC-----CHHHHHHHhhcC--CCcEEEEeCCCCHHHHHH
Q 021156          221 DFLASYADEFLVHG---------VDVE----------GKKLGI-----DDELVALLGKYS--PIPVTYAGGVTTMADLEK  274 (316)
Q Consensus       221 ~~~~~Ga~~ilvtd---------i~~d----------G~~~G~-----d~eli~~l~~~~--~iPVIasGGI~s~eDi~~  274 (316)
                      .+.+.+++.+..+.         .+.+          |...|.     .+..+.++.+.+  ++|||++|||+|.+|+.+
T Consensus       180 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~sg~~l~~~al~~i~~i~~~~~~~~~Iig~GGI~s~~Da~~  259 (311)
T d1juba_         180 ILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFE  259 (311)
T ss_dssp             HHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHTTSCTTSEEEEESSCCSHHHHHH
T ss_pred             HHHhhccceEeccccccccccccccccccccccccccCCccccccCchHHHHHHHHHHhcCCCeeEEecCCcCCHHHHHH
Confidence            77777888664321         1211          223333     234566676654  599999999999999999


Q ss_pred             HHHhCCCcCEEEEccchhhccCcccHHHHHHHHH
Q 021156          275 IKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHA  308 (316)
Q Consensus       275 l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~  308 (316)
                      .+.+|  ++.|.+++++ +|+|+..++++.+.++
T Consensus       260 ~i~aG--A~~Vql~tal-~~~Gp~~i~~i~~~L~  290 (311)
T d1juba_         260 HLLCG--ATMLQIGTAL-HKEGPAIFDRIIKELE  290 (311)
T ss_dssp             HHHHT--CSEEEECHHH-HHHCTHHHHHHHHHHH
T ss_pred             HHHcC--CCceeeeHhh-HhcChHHHHHHHHHHH
Confidence            99999  8999999997 5688876766655433

>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.69  E-value=1.8e-05  Score=66.93  Aligned_cols=81  Identities=12%  Similarity=0.059  Sum_probs=53.6

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCC-----c----ccHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCe
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGAD-----P----LSKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSY  163 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~-----~----~~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~  163 (316)
                      ++. -++...+.|++.+.+......     .    .+.+.+.+..+.+++|++++|||+ .+|+.+++++|||-|++||+
T Consensus       128 t~~-~a~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iPVia~GGI~t~~d~~~~~~~GAdgV~iGsA  206 (222)
T d1y0ea_         128 TVE-EAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVITPDMYKRVMDLGVHCSVVGGA  206 (222)
T ss_dssp             SHH-HHHHHHHTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHCCSEEEEESSCCSHHHHHHHHHTTCSEEEECHH
T ss_pred             CHH-HHHHHHHcCCCeEEEeccCCcccccCccchhhHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEchh
Confidence            444 455666778775432211111     1    123444555567899999999998 59999999999999999997


Q ss_pred             eecCCCCCHHH-HHHHHH
Q 021156          164 VFNNGQMDLER-LKDLVR  180 (316)
Q Consensus       164 ~~~~~~~~~el-i~ei~~  180 (316)
                      .. +    |+. .+++++
T Consensus       207 i~-r----p~~~~~~f~~  219 (222)
T d1y0ea_         207 IT-R----PKEITKRFVQ  219 (222)
T ss_dssp             HH-C----HHHHHHHHHH
T ss_pred             hc-C----HHHHHHHHHH
Confidence            65 4    544 444544

>d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: CutC-like
family: CutC-like
domain: Copper homeostasis protein CutC
species: Shigella flexneri [TaxId: 623]

Probab=97.64  E-value=0.0018  Score=56.22  Aligned_cols=163  Identities=13%  Similarity=0.098  Sum_probs=111.7

Q ss_pred             CHHHHHHHHHHcCCCcceEE-EecCC--cccHHHHHHHHHhCCCcEEE-----ecCCC-H--------HHHHHHHHcCCC
Q 021156           94 SAAEFANLYKEDGLTGGHAI-MLGAD--PLSKAAAIEALHAYPGGLQV-----GGGIN-S--------DNSLSYIEEGAT  156 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lv-DLda~--~~~~~~i~~~v~~~~~pl~v-----GGGIr-~--------e~~~~~l~~Gad  156 (316)
                      ++. =|..-.+.|++++.+. +|+-+  .++...+..+.+.+.+|+.|     +|..- +        +|++.+.+.|++
T Consensus         9 s~~-~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~iPv~vMIRPR~GdF~Ys~~E~~~M~~di~~~k~~G~d   87 (247)
T d1twda_           9 SME-CALTAQQNGADRVELCAAPKEGGLTPSLGVLKSVRQRVTIPVHPIIRPRGGDFCYSDGEFAAILEDVRTVRELGFP   87 (247)
T ss_dssp             SHH-HHHHHHHTTCSEEEECBCGGGTCBCCCHHHHHHHHHHCCSCEEEBCCSSSSCSCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred             CHH-HHHHHHHcCCCEEEEcCCcccCCCCCCHHHHHHHHHhcCCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHcCCC
Confidence            454 4455567899999996 55532  46666666666678888876     67663 2        357777889999


Q ss_pred             EEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecC
Q 021156          157 HVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVD  236 (316)
Q Consensus       157 ~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~  236 (316)
                      -||+|.... |+++|.+.++++.+..++-.    +          .+.+.+...  .++.+..+.+.+.|+++||-+.  
T Consensus        88 GvV~G~L~~-dg~iD~~~~~~L~~~a~~l~----v----------TFHRAfD~~--~d~~~al~~Li~lG~~rILTSG--  148 (247)
T d1twda_          88 GLVTGVLDV-DGNVDMPRMEKIMAAAGPLA----V----------TFHRAFDMC--ANPLYTLNNLAELGIARVLTSG--  148 (247)
T ss_dssp             EEEECCBCT-TSSBCHHHHHHHHHHHTTSE----E----------EECGGGGGC--SCHHHHHHHHHHHTCCEEEECT--
T ss_pred             eEEEEEECC-CCCccHHHHHHHHHHhcccC----e----------eeehhhhhh--CCHHHHHHHHHhcCCCeEeccC--
Confidence            999999764 57899999999998875321    1          122233322  3688889999999999987333  


Q ss_pred             CccccCCC-CHHHHHHHhhcC-CCcEEEEeCCCCHHHHHHHHHhC
Q 021156          237 VEGKKLGI-DDELVALLGKYS-PIPVTYAGGVTTMADLEKIKVAG  279 (316)
Q Consensus       237 ~dG~~~G~-d~eli~~l~~~~-~iPVIasGGI~s~eDi~~l~~~G  279 (316)
                        |..+-. ..+.++++.+.. +.-++++|||+. +.+..+.+.|
T Consensus       149 --g~~~a~~G~~~L~~L~~~a~~~iIm~GgGI~~-~Ni~~l~~~g  190 (247)
T d1twda_         149 --QKSDALQGLSKIMELIAHRDAPIIMAGAGVRA-ENLHHFLDAG  190 (247)
T ss_dssp             --TSSSTTTTHHHHHHHHTSSSCCEEEEESSCCT-TTHHHHHHHT
T ss_pred             --CCCchhHHHHHHHHHHHhcCCcEEEecCCCCH-HHHHHHHHcC
Confidence              122222 578888887654 333677888776 5688888777

>d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.55  E-value=6.2e-05  Score=70.56  Aligned_cols=91  Identities=19%  Similarity=0.237  Sum_probs=70.0

Q ss_pred             CHHHHHHHHHHcCCCEEEEeecCC-----------ccccCCC-----CHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHH
Q 021156          214 YLDERVLDFLASYADEFLVHGVDV-----------EGKKLGI-----DDELVALLGKYS--PIPVTYAGGVTTMADLEKI  275 (316)
Q Consensus       214 ~~~e~a~~~~~~Ga~~ilvtdi~~-----------dG~~~G~-----d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l  275 (316)
                      ++.+.++...+.|++.++++.-..           .|-++|+     -.+.++++.+.+  ++|+|.+|||.|.+|+.+.
T Consensus       281 ~i~~i~~~~~~~g~dgii~~Nt~~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~v~~~~~~~ipIIGvGGI~s~~Da~e~  360 (409)
T d1tv5a1         281 QKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEK  360 (409)
T ss_dssp             HHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHH
T ss_pred             hhHHHHHHHHhccccceecccccccccccccccccCCcccchhHHHHHHHHHHHHHHHcCCCceEEEECCCCCHHHHHHH
Confidence            467889999999999998755322           1223333     245677777765  4999999999999999999


Q ss_pred             HHhCCCcCEEEEccchhhccCcccHHHHHHHH
Q 021156          276 KVAGIGRVDVTVGSALDIFGGNLAYKDVVAWH  307 (316)
Q Consensus       276 ~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~  307 (316)
                      +.+|  ++.|-|++++ .|+|+--++++.+.+
T Consensus       361 i~AG--As~VQv~T~l-i~~Gp~~v~~I~~~L  389 (409)
T d1tv5a1         361 IEAG--ASVCQLYSCL-VFNGMKSAVQIKREL  389 (409)
T ss_dssp             HHTT--EEEEEESHHH-HHHGGGHHHHHHHHH
T ss_pred             HHcC--CCHHhhhhHH-HhcChHHHHHHHHHH
Confidence            9999  8999999996 578987777765533

>d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=97.53  E-value=0.001  Score=56.94  Aligned_cols=187  Identities=17%  Similarity=0.103  Sum_probs=115.9

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCc----ccHHHHHHHHHh-CCCcEEEecCCC-H-HHHHHHHHcCCCEEEeCCeeec
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADP----LSKAAAIEALHA-YPGGLQVGGGIN-S-DNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~----~~~~~i~~~v~~-~~~pl~vGGGIr-~-e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      +-.+..+.+.+.|++++|+==.|+..    .-...+.+.++. ...|+.+===+. . +-++++.++|++.+++-.+...
T Consensus        16 ~l~~~i~~l~~~g~d~iHiDImDG~Fvpn~t~~~~~~~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~~~i~~H~E~~~   95 (221)
T d1tqja_          16 RLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNA   95 (221)
T ss_dssp             GHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCBCHHHHHHHGGGCCSEEEEEEESSSGGGTHHHHHHHTCSEEEEECSTTT
T ss_pred             HHHHHHHHHHHcCCCEEEEECccCCccCccccCcHhHHhhhhccCcceeeeEEEeCHHHHHHHHhhccceEEEEeecccc
Confidence            44456666777899999997778752    122345555554 567766655554 4 4599999999999999776544


Q ss_pred             CCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCH
Q 021156          167 NGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDD  246 (316)
Q Consensus       167 ~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~  246 (316)
                      ++.  ...+....+..| -++-+++...                +.   .+....+.+ -++.+++..+.-.-..+.+..
T Consensus        96 ~~~--~~~~~~~i~~~g-~~~Gial~p~----------------T~---~~~l~~~l~-~~d~vlvM~V~pG~~GQ~f~~  152 (221)
T d1tqja_          96 SPH--LHRTLCQIRELG-KKAGAVLNPS----------------TP---LDFLEYVLP-VCDLILIMSVNPGFGGQSFIP  152 (221)
T ss_dssp             CTT--HHHHHHHHHHTT-CEEEEEECTT----------------CC---GGGGTTTGG-GCSEEEEESSCC----CCCCG
T ss_pred             Chh--hHHHHHHHHHCC-CCEEEEecCC----------------Cc---HHHHHHHHh-hhcEEEEEEecCCCCCcccch
Confidence            311  222222224454 2344444432                11   122223333 388999988865434455554


Q ss_pred             ---HHHHHHhh-----cCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHHh
Q 021156          247 ---ELVALLGK-----YSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       247 ---eli~~l~~-----~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~~  309 (316)
                         +-++++++     ..++++.+=|||.. +.+..+.++|  ++.+++|+++  |... ++++..+.++.
T Consensus       153 ~~~~ki~~l~~~~~~~~~~~~I~VDGGIn~-~~i~~l~~~G--ad~~V~GS~i--f~~~-d~~~~i~~lr~  217 (221)
T d1tqja_         153 EVLPKIRALRQMCDERGLDPWIEVDGGLKP-NNTWQVLEAG--ANAIVAGSAV--FNAP-NYAEAIAGVRN  217 (221)
T ss_dssp             GGHHHHHHHHHHHHHHTCCCEEEEESSCCT-TTTHHHHHHT--CCEEEESHHH--HTSS-CHHHHHHHHHT
T ss_pred             hhHHHHHHHHhhhhccccceEEEEECCcCH-HHHHHHHHcC--CCEEEEChHH--hCCC-CHHHHHHHHHh
Confidence               34444332     24678999999987 5799999998  9999999999  7654 66666665554

>d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Morphinone reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.45  E-value=0.00027  Score=65.18  Aligned_cols=148  Identities=10%  Similarity=-0.003  Sum_probs=97.2

Q ss_pred             HHHHHHHHcCCCEEEeCCe--------------eecC---------CCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeE
Q 021156          145 DNSLSYIEEGATHVIVTSY--------------VFNN---------GQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYA  201 (316)
Q Consensus       145 e~~~~~l~~Gad~VVigt~--------------~~~~---------~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~  201 (316)
                      +.++++.++|+|-|=|-.+              .++|         -++..|.++.+.+.+|++.+.+.+...  +.   
T Consensus       167 ~AA~rA~~AGfDgVEIH~ahGYLl~qFLSp~~N~RtDeYGGSlENR~Rf~~EIi~aIR~~vg~~~v~~r~~~~--~~---  241 (374)
T d1gwja_         167 QAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPF--LE---  241 (374)
T ss_dssp             HHHHHHHHTTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECTT--CC---
T ss_pred             HHHHHHHHhCCCEEEeccchhhhHHHHHHhhcCccccccccchhhhhhhHHHHHHHHHHHcCCcceeeeeeee--cc---
Confidence            3467778899999877422              1111         134568888888989877765555431  10   


Q ss_pred             EEeCCccee-cccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCC
Q 021156          202 IVTDRWQKF-SDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGI  280 (316)
Q Consensus       202 v~~~gw~~~-~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~  280 (316)
                        ..|.... ........+..+...|++.+-++.-+..+..........+.+++.+++||++.|++ +++.++++++.| 
T Consensus       242 --~~g~~~~~~~~~~~~~~~~ld~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pvi~~G~i-~~~~ae~~l~~g-  317 (374)
T d1gwja_         242 --LFGLTDDEPEAMAFYLAGELDRRGLAYLHFNEPDWIGGDITYPEGFREQMRQRFKGGLIYCGNY-DAGRAQARLDDN-  317 (374)
T ss_dssp             --CTTCCCSCHHHHHHHHHHHHHHHTCSEEEEECSCBTTBCCCCCTTHHHHHHHHCCSEEEEESSC-CHHHHHHHHHTT-
T ss_pred             --ccCCcccchHHHHHHhhccccccCceEEEeccCcccCCCcchhHHHHHHHHHHcCCCEEEECCc-CHHHHHHHHHcC-
Confidence              0122111 11123445677788899977665544333333334445677888899999999999 789999999988 


Q ss_pred             CcCEEEEccchhhccCcccHHHH
Q 021156          281 GRVDVTVGSALDIFGGNLAYKDV  303 (316)
Q Consensus       281 g~~gVivG~Al~~~~g~~~~~~~  303 (316)
                      .+|-|.+||++  ..+|-.++.+
T Consensus       318 ~aDlV~~gR~~--iadPd~~~K~  338 (374)
T d1gwja_         318 TADAVAFGRPF--IANPDLPERF  338 (374)
T ss_dssp             SCSEEEESHHH--HHCTTHHHHH
T ss_pred             CCcEehhhHHH--HHCccHHHHH
Confidence            59999999999  8888555444

>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.45  E-value=7e-05  Score=63.66  Aligned_cols=81  Identities=14%  Similarity=0.135  Sum_probs=54.1

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCC-----c-ccHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeec
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGAD-----P-LSKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~-----~-~~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      ++. -++...++|++.+.+--.+..     . .....+.+..+..++|++++|||+ .+|+.+++++|||-|++||+.. 
T Consensus       139 t~~-~a~~a~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipvia~GGI~t~~d~~~al~~GAd~V~vGsAi~-  216 (230)
T d1yxya1         139 TFD-EGLVAHQAGIDFVGTTLSGYTPYSRQEAGPDVALIEALCKAGIAVIAEGKIHSPEEAKKINDLGVAGIVVGGAIT-  216 (230)
T ss_dssp             SHH-HHHHHHHTTCSEEECTTTTSSTTSCCSSSCCHHHHHHHHHTTCCEEEESCCCSHHHHHHHHTTCCSEEEECHHHH-
T ss_pred             CHH-HHHHHHhcCCCEEEeecccccccccccchHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChhhc-
Confidence            444 566666788874432221211     1 123335555566899999999998 5999999999999999999865 


Q ss_pred             CCCCCHHHH-HHHHH
Q 021156          167 NGQMDLERL-KDLVR  180 (316)
Q Consensus       167 ~~~~~~eli-~ei~~  180 (316)
                      +    |+.+ +++++
T Consensus       217 ~----p~~i~~~~~~  227 (230)
T d1yxya1         217 R----PKEIAERFIE  227 (230)
T ss_dssp             C----HHHHHHHHHH
T ss_pred             C----HHHHHHHHHH
Confidence            4    6644 44444

>d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Hypothetical protein HI0047
species: Haemophilus influenzae [TaxId: 727]

Probab=97.44  E-value=0.002  Score=54.78  Aligned_cols=172  Identities=13%  Similarity=0.142  Sum_probs=113.3

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHH-hCCCcEEEecCC-C-HHHHHHHHHcCCCEEEeCCeeecCCC
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALH-AYPGGLQVGGGI-N-SDNSLSYIEEGATHVIVTSYVFNNGQ  169 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~-~~~~pl~vGGGI-r-~e~~~~~l~~Gad~VVigt~~~~~~~  169 (316)
                      .+..++++.+.+.|++-+-+..   ..++....++.++ +.+- +.+|-|- . .++++++.++||+.+|-=.       
T Consensus        26 ~~~~~~~~al~~~Gi~~iEitl---~~~~a~~~I~~l~~~~p~-~~vGaGTV~~~~~~~~a~~aGa~FivSP~-------   94 (212)
T d1vhca_          26 DDILPLADTLAKNGLSVAEITF---RSEAAADAIRLLRANRPD-FLIAAGTVLTAEQVVLAKSSGADFVVTPG-------   94 (212)
T ss_dssp             GGHHHHHHHHHHTTCCEEEEET---TSTTHHHHHHHHHHHCTT-CEEEEESCCSHHHHHHHHHHTCSEEECSS-------
T ss_pred             HHHHHHHHHHHHCCCCEEEEeC---CChhHHHHHHHHHhcCCC-ceEeeeecccHHHHHHHHhhCCcEEECCC-------
Confidence            4677889999988877555543   2234444555554 4543 6777665 4 5999999999999876432       


Q ss_pred             CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHH
Q 021156          170 MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELV  249 (316)
Q Consensus       170 ~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli  249 (316)
                      +++++++...+ .+    ++.+.     |   +          .++ ..+..+.+.|++.+=+...+.-   .|  ...+
T Consensus        95 ~~~~v~~~a~~-~~----i~~iP-----G---v----------~Tp-sEi~~A~~~G~~~vK~FPA~~~---gG--~~~l  145 (212)
T d1vhca_          95 LNPKIVKLCQD-LN----FPITP-----G---V----------NNP-MAIEIALEMGISAVKFFPAEAS---GG--VKMI  145 (212)
T ss_dssp             CCHHHHHHHHH-TT----CCEEC-----E---E----------CSH-HHHHHHHHTTCCEEEETTTTTT---TH--HHHH
T ss_pred             CCHHHHHHHHh-cC----CCccC-----C---c----------CCH-HHHHHHHHCCCCEEEEcccccc---ch--HHHH
Confidence            23777766554 32    12221     1   0          123 4566777899998877665432   22  3467


Q ss_pred             HHHhhc-CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcc----cHHHHHHHHHh
Q 021156          250 ALLGKY-SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNL----AYKDVVAWHAQ  309 (316)
Q Consensus       250 ~~l~~~-~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~----~~~~~~~~~~~  309 (316)
                      +.+..- .++|++..|||.. +++.+.+++|  +..+..|+.+  +...+    +++++.+.+++
T Consensus       146 kal~~p~p~~~~~ptGGV~~-~N~~~yl~~g--~v~~~~Gs~l--~~~~~i~~~d~~~i~~~a~~  205 (212)
T d1vhca_         146 KALLGPYAQLQIMPTGGIGL-HNIRDYLAIP--NIVACGGSWF--VEKKLIQSNNWDEIGRLVRE  205 (212)
T ss_dssp             HHHHTTTTTCEEEEBSSCCT-TTHHHHHTST--TBCCEEECGG--GCHHHHHTTCHHHHHHHHHH
T ss_pred             HHHhccccCCeEEecCCCCH-HHHHHHHhCC--CEEEEEChhh--CCHHHHhcCCHHHHHHHHHH
Confidence            787764 5799999999964 8999999998  7789999998  75433    45566554444

>d1viza_ c.1.4.1 (A:) PcrB protein homolog YerE {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: PcrB protein homolog YerE
species: Bacillus subtilis [TaxId: 1423]

Probab=97.43  E-value=0.00015  Score=62.50  Aligned_cols=141  Identities=16%  Similarity=0.125  Sum_probs=81.9

Q ss_pred             CCCCceeeecCCCCCCccccccccccCcccccccccEEEEE--EEeeCCe-EEEEEcccccCCCCCCCceeeecCCccCH
Q 021156           19 TSVSDLFWLHKNNNSSFYAPSSSLSRPSRLSVRCAVRFRPC--IDIHKGK-VKQIVGSTLQDSKDDGTKLVTNFESDKSA   95 (316)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIP~--IDi~~G~-vvr~~~g~~~~~~y~~~~~~~~~~~~~~p   95 (316)
                      ..-..+++..|.||.++.+.|.. +++.....-..-+..|.  +-...+. +..+                .......++
T Consensus        78 ~~~~~~~~~~g~~~~~~~~~~~~-~~~~i~~~l~~de~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~  140 (229)
T d1viza_          78 DLYFIPSVLNSKNADWIVGMHQK-AMKEYGELMSMEEIVAEGYCIANPDCKAAAL----------------TEADADLNM  140 (229)
T ss_dssp             SEEEEEEETTBSSGGGTTHHHHH-HHHHCHHHHHHSCEEEEEEEECCTTSHHHHH----------------TTBCCCCCH
T ss_pred             chhhHHHHHcccCHHHHhhhHHh-hhccccCCCCcccCHHHHHHHHhcccceeee----------------eccCCCCCH
Confidence            44567889999999999999988 44442111111223332  2222221 1110                000112244


Q ss_pred             HHHHHHHHHcC-CCcceEEEecCCc-ccHHHHHHHH-Hh-CCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCC
Q 021156           96 AEFANLYKEDG-LTGGHAIMLGADP-LSKAAAIEAL-HA-YPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQM  170 (316)
Q Consensus        96 ~e~a~~~~~~G-~~~l~lvDLda~~-~~~~~i~~~v-~~-~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~  170 (316)
                      .+. ..++..+ .-...+..+.+.. .......+.+ +. .+.|+.||+||+ .|+++++. .+||-||+||+..++   
T Consensus       141 ~~~-~~~a~~~~~~~~~~~~~~~tg~~~~~~~~~~v~~~~~~~Pl~VGFGIst~e~a~~v~-~~ADgVVVGSAiv~~---  215 (229)
T d1viza_         141 DDI-VAYARVSELLQLPIFYLEYSGVLGDIEAVKKTKAVLETSTLFYGGGIKDAETAKQYA-EHADVIVVGNAVYED---  215 (229)
T ss_dssp             HHH-HHHHHHHHHTTCSEEEEECTTSCCCHHHHHHHHHTCSSSEEEEESSCCSHHHHHHHH-TTCSEEEECTHHHHC---
T ss_pred             HHH-HHHHhhccceeEEEEEEeccCccccchhHHHHHhhccCcceEEEcccCCHHHHHHHH-cCCCEEEECHHHHhh---
Confidence            433 3333333 4446677776542 2233333444 33 458999999998 59999987 699999999999987   


Q ss_pred             CHHHHHHHHHHh
Q 021156          171 DLERLKDLVRVV  182 (316)
Q Consensus       171 ~~eli~ei~~~~  182 (316)
                       ++...+..+..
T Consensus       216 -ie~~~~~~~ai  226 (229)
T d1viza_         216 -FDRALKTVAAV  226 (229)
T ss_dssp             -HHHHHTHHHHH
T ss_pred             -HHHHHHHHHHh
Confidence             77666665544

>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Escherichia coli [TaxId: 562]

Probab=97.38  E-value=0.0031  Score=53.52  Aligned_cols=172  Identities=17%  Similarity=0.182  Sum_probs=113.9

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHH-hCCCcEEEecCC-C-HHHHHHHHHcCCCEEEeCCeeecCCC
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALH-AYPGGLQVGGGI-N-SDNSLSYIEEGATHVIVTSYVFNNGQ  169 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~-~~~~pl~vGGGI-r-~e~~~~~l~~Gad~VVigt~~~~~~~  169 (316)
                      .+.+++++.+.+.|+.-+-+..   ..++..+.++.++ +.+- +.+|.|- . .++++++.++||+.+|-=..      
T Consensus        27 ~~a~~~~~al~~~Gi~~iEitl---~tp~a~~~I~~l~~~~p~-~~vGaGTV~~~~~~~~a~~aGa~FivSP~~------   96 (213)
T d1wbha1          27 EHAVPMAKALVAGGVRVLNVTL---RTECAVDAIRAIAKEVPE-AIVGAGTVLNPQQLAEVTEAGAQFAISPGL------   96 (213)
T ss_dssp             GGHHHHHHHHHHTTCCEEEEES---CSTTHHHHHHHHHHHCTT-SEEEEESCCSHHHHHHHHHHTCSCEEESSC------
T ss_pred             HHHHHHHHHHHHCCCCEEEEeC---CChhHHHHHHHHHHHCCC-CeeeccccccHHHHHHHHHCCCcEEECCCC------
Confidence            4678899999998877555443   2234444555554 4543 5566555 5 59999999999998765332      


Q ss_pred             CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHH
Q 021156          170 MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELV  249 (316)
Q Consensus       170 ~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli  249 (316)
                       ++++++...+ .+ --.++.+                     .++ ..+..+.+.|++.+=+...+.-|   |  ...+
T Consensus        97 -~~~v~~~a~~-~~-i~~iPGv---------------------~Tp-sEi~~A~~~G~~~vKlFPA~~~G---g--~~~l  146 (213)
T d1wbha1          97 -TEPLLKAATE-GT-IPLIPGI---------------------STV-SELMLGMDYGLKEFKFFPAEANG---G--VKAL  146 (213)
T ss_dssp             -CHHHHHHHHH-SS-SCEEEEE---------------------SSH-HHHHHHHHTTCCEEEETTTTTTT---H--HHHH
T ss_pred             -CHHHHHHHHh-cC-CCccCCc---------------------CCH-HHHHHHHHCCCCEEEeccchhcC---h--HHHH
Confidence             3777766544 32 1122222                     123 44566788999988776654332   1  3567


Q ss_pred             HHHhhc-CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcc----cHHHHHHHHHh
Q 021156          250 ALLGKY-SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNL----AYKDVVAWHAQ  309 (316)
Q Consensus       250 ~~l~~~-~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~----~~~~~~~~~~~  309 (316)
                      +.+..- .+++++..|||.. +++.+.++.|  +.++..|+.+  +.+.+    +++++.+.+++
T Consensus       147 kal~~p~p~~~~~ptGGV~~-~n~~~yl~~g--~v~~~~Gs~l--~~~~~i~~~d~~~i~~~a~~  206 (213)
T d1wbha1         147 QAIAGPFSQVRFCPTGGISP-ANYRDYLALK--SVLCIGGSWL--VPADALEAGDYDRITKLARE  206 (213)
T ss_dssp             HHHHTTCTTCEEEEBSSCCT-TTHHHHHTST--TBSCEEEGGG--SCHHHHHHTCHHHHHHHHHH
T ss_pred             HHhcCcccCCceeeeCCCCH-HHHHHHHhCC--CEEEEEChhh--CChhhhhcCCHHHHHHHHHH
Confidence            777763 5799999999985 7999999998  7888999999  76544    44555554443

>d1viza_ c.1.4.1 (A:) PcrB protein homolog YerE {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: PcrB protein homolog YerE
species: Bacillus subtilis [TaxId: 1423]

Probab=97.38  E-value=0.00016  Score=62.29  Aligned_cols=59  Identities=17%  Similarity=0.182  Sum_probs=46.4

Q ss_pred             CCCHHHHHHHhhc-CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHHh
Q 021156          243 GIDDELVALLGKY-SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       243 G~d~eli~~l~~~-~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~~  309 (316)
                      ..+.+.+..+++. .++|+++++||+++|+++++. .+  +||||||+|+  .+   .+++..+..++
T Consensus       166 ~~~~~~~~~v~~~~~~~Pl~VGFGIst~e~a~~v~-~~--ADgVVVGSAi--v~---~ie~~~~~~~a  225 (229)
T d1viza_         166 LGDIEAVKKTKAVLETSTLFYGGGIKDAETAKQYA-EH--ADVIVVGNAV--YE---DFDRALKTVAA  225 (229)
T ss_dssp             CCCHHHHHHHHHTCSSSEEEEESSCCSHHHHHHHH-TT--CSEEEECTHH--HH---CHHHHHTHHHH
T ss_pred             cccchhHHHHHhhccCcceEEEcccCCHHHHHHHH-cC--CCEEEECHHH--Hh---hHHHHHHHHHH
Confidence            4466777777654 468999999999999999987 56  8999999999  76   35666655443

>d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.35  E-value=0.00013  Score=66.26  Aligned_cols=89  Identities=21%  Similarity=0.273  Sum_probs=67.3

Q ss_pred             CHHHHHHHHHHcCCCEEEEeec--CCc-----------cccCCC-----CHHHHHHHhhcC--CCcEEEEeCCCCHHHHH
Q 021156          214 YLDERVLDFLASYADEFLVHGV--DVE-----------GKKLGI-----DDELVALLGKYS--PIPVTYAGGVTTMADLE  273 (316)
Q Consensus       214 ~~~e~a~~~~~~Ga~~ilvtdi--~~d-----------G~~~G~-----d~eli~~l~~~~--~iPVIasGGI~s~eDi~  273 (316)
                      +..+.+..+.+.|++.+.....  .++           |-++|+     -++.++++++.+  ++|+|.+|||.|.+|+.
T Consensus       226 ~i~~~a~~~~~~g~~gv~~int~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~v~~v~~~~~~~ipIIG~GGI~s~~Da~  305 (336)
T d1f76a_         226 ELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAR  305 (336)
T ss_dssp             HHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHHHTTSSCEEEESSCCSHHHHH
T ss_pred             hhhhhHHHHHhcCccchhhhhhhhcccccccccccccccccccchhHHHHHHHHHHHHHHcCCCCeEEEECCCCCHHHHH
Confidence            4677888888999998865332  111           333444     234566776654  79999999999999999


Q ss_pred             HHHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156          274 KIKVAGIGRVDVTVGSALDIFGGNLAYKDVVA  305 (316)
Q Consensus       274 ~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~  305 (316)
                      +.+.+|  ++.|-|++|+ .|+|+-.++++++
T Consensus       306 e~i~aG--AsaVQv~Tal-~~~Gp~ii~~I~~  334 (336)
T d1f76a_         306 EKIAAG--ASLVQIYSGF-IFKGPPLIKEIVT  334 (336)
T ss_dssp             HHHHHT--CSEEEESHHH-HHHCHHHHHHHHH
T ss_pred             HHHHcC--CcHHHHHHHH-HhcChHHHHHHHh
Confidence            999999  8999999995 3789988888765

>d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Thermus thermophilus [TaxId: 274]

Probab=97.27  E-value=0.0012  Score=58.22  Aligned_cols=133  Identities=23%  Similarity=0.226  Sum_probs=83.7

Q ss_pred             hCCCcEEEecCCCH------HH-HHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEE
Q 021156          131 AYPGGLQVGGGINS------DN-SLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIV  203 (316)
Q Consensus       131 ~~~~pl~vGGGIr~------e~-~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~  203 (316)
                      ....|+..=+=.+.      ++ ++++.++|++-+++=-...+.    .+.+.+..+++|       ++.-     +.+ 
T Consensus        89 ~~~~pivlm~Y~N~i~~~G~~~F~~~~~~aGvdGliipDLP~ee----~~~~~~~~~~~g-------l~~I-----~lv-  151 (271)
T d1ujpa_          89 LTEKPLFLMTYLNPVLAWGPERFFGLFKQAGATGVILPDLPPDE----DPGLVRLAQEIG-------LETV-----FLL-  151 (271)
T ss_dssp             HCCSCEEEECCHHHHHHHCHHHHHHHHHHHTCCEEECTTCCGGG----CHHHHHHHHHHT-------CEEE-----CEE-
T ss_pred             ccCCcEEEEeechhhhhCCchhHhHHHhhcCceeEeccchhhhh----HHHHHHHhhccc-------ccee-----ecc-
Confidence            46788888776652      33 677788999998886655543    344555566665       2211     011 


Q ss_pred             eCCcceecccCHHHHHHHHHHcCCCEEEEeec-CCccccCCC---CHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhC
Q 021156          204 TDRWQKFSDVYLDERVLDFLASYADEFLVHGV-DVEGKKLGI---DDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAG  279 (316)
Q Consensus       204 ~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi-~~dG~~~G~---d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G  279 (316)
                             +.....+.++...+..-+.+.+.++ -..|.....   -.+.++++++.+++|+.++-||++.+|+..+  .+
T Consensus       152 -------sPtT~~eRi~~i~~~s~GFIY~Vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pv~vGFGIs~~e~v~~~--~~  222 (271)
T d1ujpa_         152 -------APTSTDARIATVVRHATGFVYAVSVTGVTGMRERLPEEVKDLVRRIKARTALPVAVGFGVSGKATAAQA--AV  222 (271)
T ss_dssp             -------CTTCCHHHHHHHHTTCCSCEEEECC------------CCHHHHHHHHTTCCSCEEEESCCCSHHHHHHH--TT
T ss_pred             -------CCCcchHHHHHHHHhCcchhhhhcccCccCccccchHHHHHHHHhhhccccCCeEEeCCCCCHHHHHHh--CC
Confidence                   1112346777777665554433232 222332222   2568999999999999999999999999865  35


Q ss_pred             CCcCEEEEccch
Q 021156          280 IGRVDVTVGSAL  291 (316)
Q Consensus       280 ~g~~gVivG~Al  291 (316)
                        +||||||||+
T Consensus       223 --ADGvIVGSAi  232 (271)
T d1ujpa_         223 --ADGVVVGSAL  232 (271)
T ss_dssp             --SSEEEECHHH
T ss_pred             --CCEEEEcHHH
Confidence              8999999998

>d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.24  E-value=0.0033  Score=53.49  Aligned_cols=185  Identities=12%  Similarity=0.048  Sum_probs=115.0

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCc-c---cHHHHHHHHHh--CCCcEEEecCCC-HHH-HHHHHHcCCCEEEeCCeee
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADP-L---SKAAAIEALHA--YPGGLQVGGGIN-SDN-SLSYIEEGATHVIVTSYVF  165 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~-~---~~~~i~~~v~~--~~~pl~vGGGIr-~e~-~~~~l~~Gad~VVigt~~~  165 (316)
                      +-.+..+.+.+.|++++|+==.|+.. +   -.....+.+++  ..+|+.+===+. .+. ++.+.++|++.+.+-+...
T Consensus        16 ~l~~~i~~l~~~~~d~iHiDimDG~Fvpn~t~g~~~v~~i~~~~~~~~~dvHLMv~~P~~~i~~~~~~~~~~i~~~~~~~   95 (221)
T d1tqxa_          16 KLAEETQRMESLGAEWIHLDVMDMHFVPNLSFGPPVINNLKKYTKSIFFDVHLMVEYPEKYVPLLKTSNQLTFHFEALNE   95 (221)
T ss_dssp             GHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCCCHHHHHHHGGGCSSCEEEEEEESSCGGGGGGGCTTSSEEEEEGGGGTT
T ss_pred             HHHHHHHHHHHcCCCEEEEECccCcCcCccccChHHHhhhhhcCCchhhhhhHHhhhhhhhhhhhhhcCceeEEeehhcc
Confidence            44466667777899999987778752 1   12344555554  346777666565 444 7777788988877754433


Q ss_pred             cCCCCCHHHHHHH--HHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHH-cCCCEEEEeecCCccccC
Q 021156          166 NNGQMDLERLKDL--VRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLA-SYADEFLVHGVDVEGKKL  242 (316)
Q Consensus       166 ~~~~~~~eli~ei--~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~-~Ga~~ilvtdi~~dG~~~  242 (316)
                      ..    ++.+..+  .+..| -+.-+++...                +   ..+....+.. ..++.+++..+.-....+
T Consensus        96 ~~----~~~~~~i~~i~~~g-~~~Gial~p~----------------t---~~~~~~~~l~~~~~d~vlim~V~pG~~GQ  151 (221)
T d1tqxa_          96 DT----ERCIQLAKEIRDNN-LWCGISIKPK----------------T---DVQKLVPILDTNLINTVLVMTVEPGFGGQ  151 (221)
T ss_dssp             CH----HHHHHHHHHHHTTT-CEEEEEECTT----------------S---CGGGGHHHHTTTCCSEEEEESSCTTCSSC
T ss_pred             cc----chhhHHHHHHHhcC-CeEEEeeccc----------------c---ccccchhhcccccccEEEEEeeccccccc
Confidence            31    2233222  23343 2333444321                1   1233334443 469999999987644455


Q ss_pred             CCCH---HHHHHHhhc-CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHH
Q 021156          243 GIDD---ELVALLGKY-SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHA  308 (316)
Q Consensus       243 G~d~---eli~~l~~~-~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~  308 (316)
                      .++.   +-++++++. .++.+.+=|||.. +.+..+.++|  ++.+++|+++  |... ++++..+.++
T Consensus       152 ~f~~~~l~KI~~lr~~~~~~~I~VDGGIn~-~~i~~l~~aG--ad~iV~GS~i--f~~~-d~~~~i~~Lr  215 (221)
T d1tqxa_         152 SFMHDMMGKVSFLRKKYKNLNIQVDGGLNI-ETTEISASHG--ANIIVAGTSI--FNAE-DPKYVIDTMR  215 (221)
T ss_dssp             CCCGGGHHHHHHHHHHCTTCEEEEESSCCH-HHHHHHHHHT--CCEEEESHHH--HTCS-SHHHHHHHHH
T ss_pred             ccCcchhHHHHHHHHhcCCcceEEEcccCH-HhHHHHHHcC--CCEEEEChHH--HCCC-CHHHHHHHHH
Confidence            5654   455556554 4688999999966 6899999999  8999999999  7543 4555555444

>d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.16  E-value=0.0012  Score=60.79  Aligned_cols=130  Identities=21%  Similarity=0.291  Sum_probs=82.6

Q ss_pred             CcEEEecCCC---HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCccee
Q 021156          134 GGLQVGGGIN---SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKF  210 (316)
Q Consensus       134 ~pl~vGGGIr---~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~  210 (316)
                      ..+.++.++.   .+.+..+.++|+|.++|.++--.. +--.+.++++.+.++ ..+ +.-.+.         +      
T Consensus       105 ~~~~v~~~~~~~~~~r~~~l~~aGvd~ivID~A~Gh~-~~~i~~lK~ir~~~~-~~v-IaGNVa---------T------  166 (368)
T d2cu0a1         105 GELLVAAAVSPFDIKRAIELDKAGVDVIVVDTAHAHN-LKAIKSMKEMRQKVD-ADF-IVGNIA---------N------  166 (368)
T ss_dssp             SCBCCEEEECTTCHHHHHHHHHTTCSEEEEECSCCCC-HHHHHHHHHHHHTCC-SEE-EEEEEC---------C------
T ss_pred             ccEEEEeccChHHHHHHHHHHHcCCCEEEecCcccch-hhhhhhhhhhhhhcc-cce-eecccc---------C------
Confidence            3577888885   377889999999999998764332 111456666666663 222 212221         1      


Q ss_pred             cccCHHHHHHHHHHcCCCEEEEeec-------CCccccCCC-CHHHHHHHh---hcCCCcEEEEeCCCCHHHHHHHHHhC
Q 021156          211 SDVYLDERVLDFLASYADEFLVHGV-------DVEGKKLGI-DDELVALLG---KYSPIPVTYAGGVTTMADLEKIKVAG  279 (316)
Q Consensus       211 ~~~~~~e~a~~~~~~Ga~~ilvtdi-------~~dG~~~G~-d~eli~~l~---~~~~iPVIasGGI~s~eDi~~l~~~G  279 (316)
                           .+.+..  ..|++.+-+ .+       ++.-+.-|. .+..+.+..   ...++|||+-||+++..|+.+++..|
T Consensus       167 -----~e~~~~--l~gaD~VkV-GIG~Gs~CTTr~~tGvG~Pq~sAi~e~~~~~~~~~~~iiADGGi~~~Gdi~KAla~G  238 (368)
T d2cu0a1         167 -----PKAVDD--LTFADAVKV-GIGPGSICTTRIVAGVGVPQITAVAMVADRAQEYGLYVIADGGIRYSGDIVKAIAAG  238 (368)
T ss_dssp             -----HHHHTT--CTTSSEEEE-CSSCSTTBCHHHHTCCCCCHHHHHHHHHHHHHHHTCEEEEESCCCSHHHHHHHHHTT
T ss_pred             -----HHHHHh--hhcCcceee-cccCcccccchhhcccccchHHHHHHHHHHHhccCCeeEecCCCCcCChhheeeeec
Confidence                 122322  247776643 11       222222333 455555554   23479999999999999999999998


Q ss_pred             CCcCEEEEccch
Q 021156          280 IGRVDVTVGSAL  291 (316)
Q Consensus       280 ~g~~gVivG~Al  291 (316)
                        ++.||+|+.|
T Consensus       239 --Ad~VMlG~~l  248 (368)
T d2cu0a1         239 --ADAVMLGNLL  248 (368)
T ss_dssp             --CSEEEESTTT
T ss_pred             --cceeeccchh
Confidence              8999999986

>d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.00043  Score=63.45  Aligned_cols=91  Identities=19%  Similarity=0.141  Sum_probs=66.2

Q ss_pred             CHHHHHHHHHHcCCCEEEEeecC------Cc-------cccCCC-----CHHHHHHHhhcC--CCcEEEEeCCCCHHHHH
Q 021156          214 YLDERVLDFLASYADEFLVHGVD------VE-------GKKLGI-----DDELVALLGKYS--PIPVTYAGGVTTMADLE  273 (316)
Q Consensus       214 ~~~e~a~~~~~~Ga~~ilvtdi~------~d-------G~~~G~-----d~eli~~l~~~~--~iPVIasGGI~s~eDi~  273 (316)
                      +..+.++.+.+.|++.++.....      ..       |.+.|+     -...++.+.+.+  ++|+|++|||.+.+|+.
T Consensus       235 ~i~~~a~~~~~~g~~gi~~~nt~~~~~~~~~~~~~~~~gg~sG~~~~~i~l~~v~~v~~~~~~~ipIig~GGI~s~~Da~  314 (367)
T d1d3ga_         235 DKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDAL  314 (367)
T ss_dssp             HHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHH
T ss_pred             hhhhhHHHHHhhhhheeecccccccccccccccccccccccccccchhhhHHHHHHHHHHhCCCccEEEECCCCCHHHHH
Confidence            46678899999999988753221      11       222333     234556665543  69999999999999999


Q ss_pred             HHHHhCCCcCEEEEccchhhccCcccHHHHHHHH
Q 021156          274 KIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWH  307 (316)
Q Consensus       274 ~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~  307 (316)
                      +.+.+|  ++.|-+++++ .|+|+-.++++.+.+
T Consensus       315 e~i~aG--As~VQi~Ta~-~~~Gp~ii~~I~~~L  345 (367)
T d1d3ga_         315 EKIRAG--ASLVQLYTAL-TFWGPPVVGKVKREL  345 (367)
T ss_dssp             HHHHHT--CSEEEESHHH-HHHCTHHHHHHHHHH
T ss_pred             HHHHcC--CCHHHhhHHH-HhcCcHHHHHHHHHH
Confidence            999999  8999999995 378997777666533

>d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 12-oxophytodienoate reductase (OPR, OYE homolog)
species: Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]

Probab=97.12  E-value=0.00036  Score=64.10  Aligned_cols=150  Identities=14%  Similarity=0.010  Sum_probs=90.0

Q ss_pred             HHHHHHHHcCCCEEEeCCe----e----------ecC---C------CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeE
Q 021156          145 DNSLSYIEEGATHVIVTSY----V----------FNN---G------QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYA  201 (316)
Q Consensus       145 e~~~~~l~~Gad~VVigt~----~----------~~~---~------~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~  201 (316)
                      +.++++.++|+|-|=|-.+    .          ++|   |      ++..|.++++.+.+|++.|++-+...  +.   
T Consensus       162 ~aA~rA~~AGfDgVeIH~ahGyLl~QFlSp~tN~RtDeYGGsleNR~Rf~~Eii~aIr~~~g~~~i~~r~s~~--~~---  236 (364)
T d1icpa_         162 VAARNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSDRVGIRISPF--AH---  236 (364)
T ss_dssp             HHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTT--CC---
T ss_pred             HHHHHHHHhCCCeEEEeccCcchhhceehhhcCCcCccccchhhhhhhHHHHHhhhhhcccCCcceeEEeccc--cc---
Confidence            3467777899999988321    1          111   1      23468999999999877665554321  00   


Q ss_pred             EEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCcccc-CCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCC
Q 021156          202 IVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKK-LGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGI  280 (316)
Q Consensus       202 v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~-~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~  280 (316)
                       ...++........+..++.+...++..+-+.....+... .+...+....+++.++.|++++||+ +.++..+++..| 
T Consensus       237 -~~~~g~~~~~~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~vi~~g~~-~~~~ae~~l~~g-  313 (364)
T d1icpa_         237 -YNEAGDTNPTALGLYMVESLNKYDLAYCHVVEPRMKTAWEKIECTESLVPMRKAYKGTFIVAGGY-DREDGNRALIED-  313 (364)
T ss_dssp             -TTTCCCSCHHHHHHHHHHHHGGGCCSEEEEECCSCCC------CCCCSHHHHHHCCSCEEEESSC-CHHHHHHHHHTT-
T ss_pred             -ccCCcCcchHHHHHHHHHHhhccceeeeeeecCcccccccccccHHHHHHHHHhcCCCEEEECCC-CHHHHHHHHHcC-
Confidence             011111111111234455555666665544433332222 2223445666777888999999986 778899999888 


Q ss_pred             CcCEEEEccchhhccCcccHHHHH
Q 021156          281 GRVDVTVGSALDIFGGNLAYKDVV  304 (316)
Q Consensus       281 g~~gVivG~Al~~~~g~~~~~~~~  304 (316)
                      .+|.|.+||++  ..+|--.+.++
T Consensus       314 ~aD~V~~gR~~--iadPd~~~k~~  335 (364)
T d1icpa_         314 RADLVAYGRLF--ISNPDLPKRFE  335 (364)
T ss_dssp             SCSEEEESHHH--HHCTTHHHHHH
T ss_pred             CCceehhHHHH--HHCccHHHHHH
Confidence            59999999999  88885554443

>d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl phosphate synthase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: (S)-3-O-geranylgeranylglyceryl phosphate synthase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.12  E-value=0.00038  Score=59.85  Aligned_cols=60  Identities=18%  Similarity=0.214  Sum_probs=42.6

Q ss_pred             CCcceEEEecCC--cccHHHHHHHHHh-CCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecC
Q 021156          107 LTGGHAIMLGAD--PLSKAAAIEALHA-YPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNN  167 (316)
Q Consensus       107 ~~~l~lvDLda~--~~~~~~i~~~v~~-~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~  167 (316)
                      +-....+.....  ..+...+.+..+. .++|+.||+||+ .|+++++.+ +||-||+||++.++
T Consensus       158 ~vs~~gvtg~~~~~~~~~~~~~~~~k~~~~~Pv~VGFGI~s~e~a~~~~~-~ADgvIVGSaive~  221 (231)
T d2f6ua1         158 LFNLPIIYIEYSGTYGNPELVAEVKKVLDKARLFYGGGIDSREKAREMLR-YADTIIVGNVIYEK  221 (231)
T ss_dssp             TTCCSEEEEECTTSCCCHHHHHHHHHHCSSSEEEEESCCCSHHHHHHHHH-HSSEEEECHHHHHH
T ss_pred             hcceEEEEEecccccchhhHHHHHHHhcCCCCEEEEeCcCCHHHHHHHHh-cCCEEEEChHHhcc
Confidence            334445555433  2344455555554 459999999998 499999876 79999999998764

>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: 3-keto-L-gulonate 6-phosphate decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=97.08  E-value=0.00091  Score=55.33  Aligned_cols=139  Identities=12%  Similarity=0.107  Sum_probs=81.6

Q ss_pred             CCcEEEecCCC--H-HHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHH---HHhcCceEEEeeeeeecCCeeEEEeCC
Q 021156          133 PGGLQVGGGIN--S-DNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLV---RVVGKQRLVLDLSCRKKDGKYAIVTDR  206 (316)
Q Consensus       133 ~~pl~vGGGIr--~-e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~---~~~G~~~IvvslD~k~~~g~~~v~~~g  206 (316)
                      +.++...--+.  . ...+.+.++|||.+.+-...  .    ++.++++.   +.+|. .  +.++.-            
T Consensus        54 ~~~i~~d~k~~d~~~~~~~~~~~~gad~vtvh~~~--g----~~~~~~~~~~~~~~~~-~--~~v~~~------------  112 (213)
T d1q6oa_          54 HKIVLADAKIADAGKILSRMCFEANADWVTVICCA--D----INTAKGALDVAKEFNG-D--VQIELT------------  112 (213)
T ss_dssp             TSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTS--C----HHHHHHHHHHHHHTTC-E--EEEEEC------------
T ss_pred             cccceeEEeeccchHHHHHHHHHcCCCEEEEeccC--C----chHHHHHHHHHHHcCC-c--eecccC------------
Confidence            45665555553  2 33677789999999885432  1    44455444   44542 2  222221            


Q ss_pred             cceecccCHHHHHHHHHHcCCCEEEEeecCCcccc-CCCCHHHHHHHhhc--CCCcEEEEeCCCCHHHHHHHHHhCCCcC
Q 021156          207 WQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKK-LGIDDELVALLGKY--SPIPVTYAGGVTTMADLEKIKVAGIGRV  283 (316)
Q Consensus       207 w~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~-~G~d~eli~~l~~~--~~iPVIasGGI~s~eDi~~l~~~G~g~~  283 (316)
                           .....+....+.+.+++.++++-....|.. .......++.+++.  .+.|+...||++ .+++.++.+.|  ++
T Consensus       113 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~i~~~~~~~~~i~~~gGi~-~~~~~~~~~~G--ad  184 (213)
T d1q6oa_         113 -----GYWTWEQAQQWRDAGIGQVVYHRSRDAQAAGVAWGEADITAIKRLSDMGFKVTVTGGLA-LEDLPLFKGIP--IH  184 (213)
T ss_dssp             -----SCCCHHHHHHHHHTTCCEEEEECCHHHHHTTCCCCHHHHHHHHHHHHTTCEEEEESSCC-GGGGGGGTTSC--CS
T ss_pred             -----CCCCHHHHHHHHHhHHHHHHHHHhcccCcCCeeCCHHHHHHHHHhhccCceEecCCCcC-cCCHHHHHHcC--CC
Confidence                 011235677788889988776432222221 22233344444332  467888888875 78999999888  89


Q ss_pred             EEEEccchhhccCcccHHHH
Q 021156          284 DVTVGSALDIFGGNLAYKDV  303 (316)
Q Consensus       284 gVivG~Al~~~~g~~~~~~~  303 (316)
                      .++|||++  |.-. ++.+.
T Consensus       185 ~iVVGr~I--~~a~-dp~~a  201 (213)
T d1q6oa_         185 VFIAGRSI--RDAA-SPVEA  201 (213)
T ss_dssp             EEEESHHH--HTSS-CHHHH
T ss_pred             EEEEChhh--cCCC-CHHHH
Confidence            99999999  7533 34443

>d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl phosphate synthase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: (S)-3-O-geranylgeranylglyceryl phosphate synthase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.07  E-value=0.0002  Score=61.71  Aligned_cols=61  Identities=18%  Similarity=0.183  Sum_probs=45.4

Q ss_pred             CCEEEEeecCCccccCCCCHHHHHHHhhc-CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhcc
Q 021156          227 ADEFLVHGVDVEGKKLGIDDELVALLGKY-SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFG  295 (316)
Q Consensus       227 a~~ilvtdi~~dG~~~G~d~eli~~l~~~-~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~  295 (316)
                      ++...+|.... +  .+.+.+.+..+++. .++|+++++||++.|+++++.+ +  ++|||||+|+  ++
T Consensus       159 vs~~gvtg~~~-~--~~~~~~~~~~~~k~~~~~Pv~VGFGI~s~e~a~~~~~-~--ADgvIVGSai--ve  220 (231)
T d2f6ua1         159 FNLPIIYIEYS-G--TYGNPELVAEVKKVLDKARLFYGGGIDSREKAREMLR-Y--ADTIIVGNVI--YE  220 (231)
T ss_dssp             TCCSEEEEECT-T--SCCCHHHHHHHHHHCSSSEEEEESCCCSHHHHHHHHH-H--SSEEEECHHH--HH
T ss_pred             cceEEEEEecc-c--ccchhhHHHHHHHhcCCCCEEEEeCcCCHHHHHHHHh-c--CCEEEEChHH--hc
Confidence            34444555432 2  34567776666654 5799999999999999999987 5  7999999999  65

>d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: PdxS-like
domain: Pyridoxal biosynthesis lyase PdxS
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.05  E-value=0.00092  Score=57.39  Aligned_cols=195  Identities=19%  Similarity=0.115  Sum_probs=109.5

Q ss_pred             CHHHHHHHHHHcCCCcceE---E--EecCC-----cccHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCC
Q 021156           94 SAAEFANLYKEDGLTGGHA---I--MLGAD-----PLSKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTS  162 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~l---v--DLda~-----~~~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt  162 (316)
                      +| |.|+.-+++|+-.++.   +  |+-..     ..+...+.++.+.+.+|+..=-.|. .-+++-|-+.|.|++-=. 
T Consensus        10 ~~-eqA~iAe~aGAvaVmaLervpadiR~~GGvaRm~dp~~i~ei~~~vsipvmak~righ~~eaqiLe~~~vd~ides-   87 (254)
T d1znna1          10 NA-EQAKIAEAAGAVAVMALERVPADIRAAGGVARMADPTVIEEVMNAVSIPVMAKVRIGHYVEARVLEALGVDYIDES-   87 (254)
T ss_dssp             SH-HHHHHHHHHTCSEEEECC---------CCCCCCCCHHHHHHHHHHCSSCEEEEEETTCHHHHHHHHHHTCSEEEEE-
T ss_pred             CH-HHHHHhhccCceeEeeeccCCHHHHhcCCcccCCCHHHHHHHHHhcccccccccCCCchHHHHhHHhhCCCcccHh-
Confidence            45 4788888888654322   2  23211     2456666777778999999998886 677777777888876422 


Q ss_pred             eeecCCCCCHHHHHHHHHHhcCceEEEeeeeee--------cCCeeEEEeCCcceecc-cCHHHHHHHHHHcCCCEEEEe
Q 021156          163 YVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRK--------KDGKYAIVTDRWQKFSD-VYLDERVLDFLASYADEFLVH  233 (316)
Q Consensus       163 ~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~--------~~g~~~v~~~gw~~~~~-~~~~e~a~~~~~~Ga~~ilvt  233 (316)
                      +.+. +....+.+.+  +.|   ++=+-.|++.        .+|--.++++|..-... .+....++.+.+.+..-.. .
T Consensus        88 eVLT-pad~~~hi~k--~~f---kvpfVcg~r~Lgealrri~EgAamIrtkGeagtgnvveav~h~R~i~~~i~~~~~-m  160 (254)
T d1znna1          88 EVLT-PADEEFHIDK--RQF---TVPFVCGCRDLGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQIRKVVN-M  160 (254)
T ss_dssp             TTSC-CSCSSCCCCG--GGC---SSCEEEEESSHHHHHHHHHTTCSEEEECCCTTSCCCHHHHHHHHHHHHHHHHHHH-S
T ss_pred             Hhcc-cccHHHhhcc--cce---eeeeeCCCCccchhHHHHHHHHHHHHhCCccCCCcHHHHHHHHHHHHHHHHHHHc-C
Confidence            1111 0000000000  001   0001112110        01212556666532111 1233445555554433110 0


Q ss_pred             e---cCCccccCCCCHHHHHHHhh--cCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCccc
Q 021156          234 G---VDVEGKKLGIDDELVALLGK--YSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLA  299 (316)
Q Consensus       234 d---i~~dG~~~G~d~eli~~l~~--~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~  299 (316)
                      +   ...-+...|...+++.++.+  .+++|+++.|||.++.|...+.++|  ++||.+|+++|.-.+|..
T Consensus       161 ~~~el~~~ak~lg~p~~l~~~v~~~g~l~v~~~~~~Gi~tpadaa~~MelG--~dgV~v~s~I~~s~dP~~  229 (254)
T d1znna1         161 SEDELVAEAKQLGAPVEVLREIKRLGRLPVVNFAAGGVTTPADAALMMHLG--ADGVFVGSGIFKSENPEK  229 (254)
T ss_dssp             CGGGHHHHHHHHTCCHHHHHHHHHHTSCSSEEEEESSCCSHHHHHHHHHTT--CSEEEECGGGGGSSCHHH
T ss_pred             CHHHHHHHHHhhCCchHHHHHHHHhCCCCceEEecCCCCChhhHHHHHHcC--CCEEEEcchhhcCCCHHH
Confidence            1   11123445778888888875  4789999999999999999999999  999999999955555443

>d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Pentaerythritol tetranirate reductase
species: Enterobacter cloacae [TaxId: 550]

Probab=96.93  E-value=0.0015  Score=59.79  Aligned_cols=148  Identities=11%  Similarity=0.020  Sum_probs=96.6

Q ss_pred             HHHHHHHHcCCCEEEeCCee--------------ecC---C------CCCHHHHHHHHHHhcCceEEEeeeeeec-CCee
Q 021156          145 DNSLSYIEEGATHVIVTSYV--------------FNN---G------QMDLERLKDLVRVVGKQRLVLDLSCRKK-DGKY  200 (316)
Q Consensus       145 e~~~~~l~~Gad~VVigt~~--------------~~~---~------~~~~eli~ei~~~~G~~~IvvslD~k~~-~g~~  200 (316)
                      +.++++.++|+|-|=|-.+-              ++|   |      ++..|.++.+.+++|++.|.+-+..... +.  
T Consensus       164 ~AA~rA~~aGfDgVEIH~ahGYLl~qFlSp~~N~RtDeYGGs~eNR~Rf~~Eii~aIr~~~g~d~i~~r~s~~~~~~~--  241 (363)
T d1vyra_         164 QAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQN--  241 (363)
T ss_dssp             HHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCBTT--
T ss_pred             HHHHHHHHhccceeeecccCceeeeeeecCcccccccccccchhhhhHhHHHHHhhhhhhcCCCCcceeecccccccc--
Confidence            34667778999998774321              111   1      2456888888888987776444443200 00  


Q ss_pred             EEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCC
Q 021156          201 AIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGI  280 (316)
Q Consensus       201 ~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~  280 (316)
                       . ..+..  +..+..++++.+.+.|++.+-+..-+.. ...++...+.+.+++.+++||++.|+ .++++++++++.| 
T Consensus       242 -~-~~gg~--~~~e~~~~~~~l~~~gvd~i~vs~~~~~-~~~~~~~~~~~~~~~~~~~~vi~~G~-~t~~~ae~~l~~G-  314 (363)
T d1vyra_         242 -V-DNGPN--EEADALYLIEELAKRGIAYLHMSETDLA-GGKPYSEAFRQKVRERFHGVIIGAGA-YTAEKAEDLIGKG-  314 (363)
T ss_dssp             -B-CCCTT--HHHHHHHHHHHHHHTTCSEEEEECCBTT-BCCCCCHHHHHHHHHHCCSEEEEESS-CCHHHHHHHHHTT-
T ss_pred             -h-hhccc--chHHHHHHHHHHHhcCCeeeecccCCcc-CCccccHHHHHHHHHhcCceEEecCC-CCHHHHHHHHHCC-
Confidence             0 01111  1124667889999999997654332221 12345777778888888888887765 5899999999998 


Q ss_pred             CcCEEEEccchhhccCcccHHHH
Q 021156          281 GRVDVTVGSALDIFGGNLAYKDV  303 (316)
Q Consensus       281 g~~gVivG~Al~~~~g~~~~~~~  303 (316)
                      .+|-|.+||++  ..+|-.++.+
T Consensus       315 ~~DlV~~gR~l--iadP~~~~K~  335 (363)
T d1vyra_         315 LIDAVAFGRDY--IANPDLVARL  335 (363)
T ss_dssp             SCSEEEESHHH--HHCTTHHHHH
T ss_pred             CcceehhhHHH--HHCccHHHHH
Confidence            48999999999  8888554444

>d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.88  E-value=0.0014  Score=57.43  Aligned_cols=73  Identities=14%  Similarity=0.064  Sum_probs=51.4

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCC---c----ccHHHHHHHHH-hCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCee
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGAD---P----LSKAAAIEALH-AYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYV  164 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~---~----~~~~~i~~~v~-~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~  164 (316)
                      .|.+..+...+..-..+|++-.-+.   .    ......++.++ ..+.|+.||-||+ .++++.+.+.|||-|||||++
T Consensus       153 t~~~Ri~~i~~~a~gFvY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pi~vGFGI~~~e~v~~~~~~gaDGvIVGSai  232 (261)
T d1rd5a_         153 IPEDRMKEITKASEGFVYLVSVNGVTGPRANVNPRVESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIGSAM  232 (261)
T ss_dssp             SCHHHHHHHHHHCCSCEEEECSSCCBCTTSCBCTHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEECHHH
T ss_pred             CchhHHHHHHhcCcchhhhhhccCcccccccchhHHHHHHHHhhhccCCCeEEEcCCCCHHHHHHHHhcCCCEEEECHHH
Confidence            4555666666654455566655543   1    11233444455 3689999999998 599999999999999999998


Q ss_pred             ec
Q 021156          165 FN  166 (316)
Q Consensus       165 ~~  166 (316)
                      .+
T Consensus       233 v~  234 (261)
T d1rd5a_         233 VR  234 (261)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: ThiG-like
family: ThiG-like
domain: Thiazole biosynthesis protein ThiG
species: Bacillus subtilis [TaxId: 1423]

Probab=96.83  E-value=0.0018  Score=55.70  Aligned_cols=71  Identities=15%  Similarity=0.137  Sum_probs=49.7

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCC-----cc-cHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeee
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGAD-----PL-SKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVF  165 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~-----~~-~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~  165 (316)
                      +||+ +|+++.+.|+.  -+.-|.+-     .. |...+..++.+.++|++|++||- ..|+-.+.+.|||-|.++|+.-
T Consensus       134 ~D~v-~ak~Le~~Gc~--avMPlgsPIGSg~Gl~n~~~l~~i~~~~~vPvIvDAGIG~pSdAa~AMElG~daVLvNTAIA  210 (251)
T d1xm3a_         134 DDVV-LARKLEELGVH--AIMPGASPIGSGQGILNPLNLSFIIEQAKVPVIVDAGIGSPKDAAYAMELGADGVLLNTAVS  210 (251)
T ss_dssp             SCHH-HHHHHHHHTCS--CBEECSSSTTCCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHTTCSEEEESHHHH
T ss_pred             CCHH-HHHHHHHcCCh--hHHHhhhhhhcCCCcCChHHHHHHHhcCCccEEEecCCCCHHHHHHHHHccCCEEEechhhh
Confidence            4665 66666666654  23333321     12 44444444457899999999996 6999999999999999999875


Q ss_pred             c
Q 021156          166 N  166 (316)
Q Consensus       166 ~  166 (316)
                      .
T Consensus       211 ~  211 (251)
T d1xm3a_         211 G  211 (251)
T ss_dssp             T
T ss_pred             c
Confidence            4

>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Lactococcus lactis, isozyme B [TaxId: 1358]

Probab=96.81  E-value=0.0006  Score=60.51  Aligned_cols=86  Identities=15%  Similarity=0.109  Sum_probs=62.8

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEec--------CC-------------ccc----HHHHHHHHHhCCCcEEEecCCCH-HH
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLG--------AD-------------PLS----KAAAIEALHAYPGGLQVGGGINS-DN  146 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLd--------a~-------------~~~----~~~i~~~v~~~~~pl~vGGGIr~-e~  146 (316)
                      .+..++++...+.|++++.+..-.        ..             ...    ...+.++.+.+++||+..|||++ +|
T Consensus       176 ~~~~~~a~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~sG~~i~~~~l~~i~~i~~~~~ipIig~GGI~s~~D  255 (311)
T d1ep3a_         176 TDIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDVDIPIIGMGGVANAQD  255 (311)
T ss_dssp             SCSHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTTCSSCEEECSSCCSHHH
T ss_pred             cchHHHHHHHHHhhhheeEEEeeccccccccccccccccccCCCCCCCcccchhHHHHHHHhhhcceeEEEeCCcCCHHH
Confidence            356678998888898887765421        10             001    22233333457899999999985 99


Q ss_pred             HHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHh
Q 021156          147 SLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVV  182 (316)
Q Consensus       147 ~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~  182 (316)
                      +.+++.+||+.|-+||.++.+    |.++.++.+..
T Consensus       256 a~~~i~~GAd~V~ig~~~~~~----P~i~~~I~~~L  287 (311)
T d1ep3a_         256 VLEMYMAGASAVAVGTANFAD----PFVCPKIIDKL  287 (311)
T ss_dssp             HHHHHHHTCSEEEECTHHHHC----TTHHHHHHHHH
T ss_pred             HHHHHHcCCCEEEecHHHHcC----ChHHHHHHHHH
Confidence            999999999999999999987    77777776654

>d1v5xa_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI
species: Thermus thermophilus [TaxId: 274]

Probab=96.80  E-value=0.018  Score=47.78  Aligned_cols=160  Identities=14%  Similarity=0.069  Sum_probs=99.9

Q ss_pred             cCCC-HHHHHHHHHcCCCEEEeCCeeecC-C-CCCHHHHHHHHHHhcC--ceEEEeeeeeec--------CCeeEEEeCC
Q 021156          140 GGIN-SDNSLSYIEEGATHVIVTSYVFNN-G-QMDLERLKDLVRVVGK--QRLVLDLSCRKK--------DGKYAIVTDR  206 (316)
Q Consensus       140 GGIr-~e~~~~~l~~Gad~VVigt~~~~~-~-~~~~eli~ei~~~~G~--~~IvvslD~k~~--------~g~~~v~~~g  206 (316)
                      +||+ .+|++.+.++|||.+  |-.+..+ + .++++.++++.+...+  .++.+.++....        -+--.+..+|
T Consensus         6 CGit~~ed~~~~~~~gad~i--Gfif~~~SpR~vs~~~a~~i~~~~~~~~~~V~Vf~~~~~~~i~~~~~~~~~d~vQlHg   83 (200)
T d1v5xa_           6 CGITRLEDALLAEALGAFAL--GFVLAPGSRRRIAPEAARAIGEALGPFVVRVGVFRDQPPEEVLRLMEEARLQVAQLHG   83 (200)
T ss_dssp             CCCCCHHHHHHHHHHTCSEE--EEECCTTCTTBCCHHHHHHHHHHSCSSSEEEEEESSCCHHHHHHHHHHTTCSEEEECS
T ss_pred             cCCCcHHHHHHHHhCCCCEE--EEEcCCCCCCCcCHHHHHHHHHhhcCceeeeeeeeechhhhhhhhhcccccccccccc
Confidence            5787 699999999999986  4344432 3 3578999999887743  334443332100        0111455554


Q ss_pred             cceecccCHHHHHHHH--------------------HHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCC
Q 021156          207 WQKFSDVYLDERVLDF--------------------LASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGV  266 (316)
Q Consensus       207 w~~~~~~~~~e~a~~~--------------------~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI  266 (316)
                      -..      .+.++.+                    .+..++.+ +.|-...|+..|.||++...+.. ...|++.+||+
T Consensus        84 ~e~------~~~~~~l~~~~~iik~~~~~~~~~~~~~~~~~~~~-L~D~~~~g~g~~~~~~~~~~~~~-~~~~~~LAGGl  155 (200)
T d1v5xa_          84 EEP------PEWAEAVGRFYPVIKAFPLEGPARPEWADYPAQAL-LLDGKRPGSGEAYPRAWAKPLLA-TGRRVILAGGI  155 (200)
T ss_dssp             CCC------HHHHHHHTTTSCEEEEEECSSSCCGGGGGSSCSEE-EEECSSTTSCCCCCGGGGHHHHH-TTSCEEECSSC
T ss_pred             cCC------HHHHHHHhhccccceeeccCchhhHHHhhcchhhe-eecccccCcccccchHHHhhhhh-ccCceEecCCC
Confidence            321      2233322                    12234444 45666678888888877655433 35699999999


Q ss_pred             CCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHHhhcc
Q 021156          267 TTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQQEA  312 (316)
Q Consensus       267 ~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~~~~~  312 (316)
                      .. +.+.++++.+  ..+|=|.+++=...|.=+++.+.+++++-+.
T Consensus       156 ~~-~Nv~~~~~~~--p~gvDvsSGvE~~~G~KD~~ki~~f~~~~~~  198 (200)
T d1v5xa_         156 AP-ENLEEVLALR--PYALDLASGVEEAPGVKSAEKLRALFARLAS  198 (200)
T ss_dssp             CS-TTHHHHHHHC--CSEEEESGGGEEETTEECHHHHHHHHHHHHH
T ss_pred             CH-HHHHHHHhcC--CCEEEEcCceECCCCccCHHHHHHHHHHHHh
Confidence            85 5688888877  8899999998222355678888777766443

>d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.76  E-value=0.00092  Score=58.23  Aligned_cols=73  Identities=16%  Similarity=0.154  Sum_probs=50.7

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCC---c-c---cHHHHHHHHH-hCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCee
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGAD---P-L---SKAAAIEALH-AYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYV  164 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~---~-~---~~~~i~~~v~-~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~  164 (316)
                      .|.+..+...+..-..+|++-.-+.   . .   .....++.++ ..+.|+.||-||+ .|+++++++.|||-||+||++
T Consensus       144 t~~~ri~~i~~~s~gFiY~vs~~GvTG~~~~~~~~~~~~v~~vk~~t~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVGSai  223 (248)
T d1geqa_         144 TPDERLKVIDDMTTGFVYLVSLYGTTGAREEIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSAL  223 (248)
T ss_dssp             CCHHHHHHHHHHCSSEEEEECCC-------CCCHHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEECHHH
T ss_pred             chhHHHHHHHhcCCCeEEEEecccccccchhhhhhHHHHHHHHhhhcccceeeecccCCHHHHHHHHhcCCCEEEECHHH
Confidence            4445666666655555666666543   1 1   1233444444 4789999999998 599999999999999999998


Q ss_pred             ec
Q 021156          165 FN  166 (316)
Q Consensus       165 ~~  166 (316)
                      .+
T Consensus       224 v~  225 (248)
T d1geqa_         224 VK  225 (248)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.75  E-value=0.0012  Score=57.99  Aligned_cols=73  Identities=18%  Similarity=0.114  Sum_probs=53.2

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCc-------ccHHHHHHHHH-hCCCcEEEecCCCH-HHHHHHHHcCCCEEEeCCee
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADP-------LSKAAAIEALH-AYPGGLQVGGGINS-DNSLSYIEEGATHVIVTSYV  164 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~-------~~~~~i~~~v~-~~~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~  164 (316)
                      .|.+..+...+..-..+|++-+-|..       ......++.++ ..++|+.||.||++ |++.++++.|||-|||||++
T Consensus       158 t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVGSAi  237 (267)
T d1qopa_         158 ADDDLLRQVASYGRGYTYLLSRSGVTGAENRGALPLHHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISGSAI  237 (267)
T ss_dssp             CCHHHHHHHHHHCCSCEEEESSSSCCCSSSCC--CCHHHHHHHHHTTCCCEEEESSCCSHHHHHHHHHTTCSEEEECHHH
T ss_pred             ccHHHHHHHHhhCchhhhhhcccccCCcccccchhHHHHHHHHhhhccCCceeecccCCHHHHHHHHhcCCCEEEECHHH
Confidence            45556666666555566777766531       12334555565 46899999999995 99999999999999999988


Q ss_pred             ec
Q 021156          165 FN  166 (316)
Q Consensus       165 ~~  166 (316)
                      .+
T Consensus       238 vk  239 (267)
T d1qopa_         238 VK  239 (267)
T ss_dssp             HH
T ss_pred             HH
Confidence            76

>d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Pseudomonas putida [TaxId: 303]

Probab=96.75  E-value=0.0071  Score=51.29  Aligned_cols=172  Identities=17%  Similarity=0.166  Sum_probs=110.1

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHH-hCCCcEEEecCC-C-HHHHHHHHHcCCCEEEeCCeeecCCC
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALH-AYPGGLQVGGGI-N-SDNSLSYIEEGATHVIVTSYVFNNGQ  169 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~-~~~~pl~vGGGI-r-~e~~~~~l~~Gad~VVigt~~~~~~~  169 (316)
                      .+.+++++.+.+.|++-+-+..   ..++..+.++.++ +.+- +.+|-|- . .++++++.++||+.+|-=..      
T Consensus        29 ~~a~~~~~al~~~Gi~~iEitl---~~p~a~~~i~~l~~~~p~-~~vGaGTV~~~~~~~~a~~aGa~FivsP~~------   98 (216)
T d1mxsa_          29 EDILPLADALAAGGIRTLEVTL---RSQHGLKAIQVLREQRPE-LCVGAGTVLDRSMFAAVEAAGAQFVVTPGI------   98 (216)
T ss_dssp             GGHHHHHHHHHHTTCCEEEEES---SSTHHHHHHHHHHHHCTT-SEEEEECCCSHHHHHHHHHHTCSSEECSSC------
T ss_pred             HHHHHHHHHHHHCCCCEEEEeC---CChhHHHHHHHHHHhCCC-cceeeeeeecHHHHHHHHhCCCCEEECCCC------
Confidence            4688899999998876444433   2234445555554 4543 6666554 5 59999999999998765332      


Q ss_pred             CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHH
Q 021156          170 MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELV  249 (316)
Q Consensus       170 ~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli  249 (316)
                       ++++++... +.+ --.++.+                     .++ ..+..+.+.|++.+=+...+..|   |  ...+
T Consensus        99 -~~~v~~~a~-~~~-i~~iPGv---------------------~Tp-sEi~~A~~~G~~~vKlFPA~~~~---g--~~~i  148 (216)
T d1mxsa_          99 -TEDILEAGV-DSE-IPLLPGI---------------------STP-SEIMMGYALGYRRFKLFPAEISG---G--VAAI  148 (216)
T ss_dssp             -CHHHHHHHH-HCS-SCEECEE---------------------CSH-HHHHHHHTTTCCEEEETTHHHHT---H--HHHH
T ss_pred             -cHHHHHHHH-hcC-CCccCCc---------------------CCH-HHHHHHHHCCCCEEEeccccccc---c--HHHH
Confidence             377776543 333 1111111                     123 45667788999988776654322   2  3567


Q ss_pred             HHHhhc-CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCc----ccHHHHHHHHHh
Q 021156          250 ALLGKY-SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGN----LAYKDVVAWHAQ  309 (316)
Q Consensus       250 ~~l~~~-~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~----~~~~~~~~~~~~  309 (316)
                      +.++.- .++|++..|||.. +++.+.++.|  ...++.|+.+  +...    =.++++.+.+++
T Consensus       149 kal~~p~p~~~fiptGGV~~-~n~~~yl~~~--~v~avggs~l--~~~~~i~~~d~~~i~~~a~~  208 (216)
T d1mxsa_         149 KAFGGPFGDIRFCPTGGVNP-ANVRNYMALP--NVMCVGTTWM--LDSSWIKNGDWARIEACSAE  208 (216)
T ss_dssp             HHHHTTTTTCEEEEBSSCCT-TTHHHHHHST--TBCCEEECTT--SCHHHHHTTCHHHHHHHHHH
T ss_pred             HHHhcccccCceeccCCCCH-HHHHHHHhcC--CeEEEEcccc--CCHHHhhcCCHHHHHHHHHH
Confidence            777663 5799999999985 7999999988  5567778888  5422    244566555444

>d1nu5a1 c.1.11.2 (A:127-369) Chlormuconate cycloisomerase {Pseudomonas sp. p51 [TaxId: 65067]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: Chlormuconate cycloisomerase
species: Pseudomonas sp. p51 [TaxId: 65067]

Probab=96.75  E-value=0.0089  Score=50.98  Aligned_cols=148  Identities=11%  Similarity=0.106  Sum_probs=102.0

Q ss_pred             EEecCCCHHHHH----HHHHcCCCE--EEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCccee
Q 021156          137 QVGGGINSDNSL----SYIEEGATH--VIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKF  210 (316)
Q Consensus       137 ~vGGGIr~e~~~----~~l~~Gad~--VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~  210 (316)
                      .+++|-..+++.    .+.+.|...  +=+|....+.   +.+.++.+.+.+| +.+.+.+|+.          .+|.-.
T Consensus        11 ~~~~~~~~~~~~e~~~~~~~~G~~~~KiKvG~~~~~~---Di~~v~~ir~~~g-~~~~l~vDaN----------~~~~~~   76 (243)
T d1nu5a1          11 TLASGDTARDIDSALEMIETRRHNRFKVKLGARTPAQ---DLEHIRSIVKAVG-DRASVRVDVN----------QGWDEQ   76 (243)
T ss_dssp             EECSSCHHHHHHHHHHHHHTTSCSEEEEECSSSCHHH---HHHHHHHHHHHHG-GGCEEEEECT----------TCCCHH
T ss_pred             EEcCCChHHHHHHHHHHHHhCCCCEEEEEeCCCCHHH---HHHHHHHHHHHhC-cccceEEECC----------CCccch
Confidence            556664333333    333468775  4456533222   3889999999997 5678899983          356422


Q ss_pred             cccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccc
Q 021156          211 SDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSA  290 (316)
Q Consensus       211 ~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~A  290 (316)
                         +..++++.+.+.++..+ =-.+      ..-|++.++++++.+++|+...--+.+.+++.++.+.+ .++.+.+--.
T Consensus        77 ---~A~~~~~~l~~~~~~~i-EeP~------~~~~~~~~~~l~~~~~ipIa~gE~~~~~~~~~~~i~~~-~~d~~~~d~~  145 (243)
T d1nu5a1          77 ---TASIWIPRLEEAGVELV-EQPV------PRANFGALRRLTEQNGVAILADESLSSLSSAFELARDH-AVDAFSLKLC  145 (243)
T ss_dssp             ---HHHHHHHHHHHHTCCEE-ECCS------CTTCHHHHHHHHHHCSSEEEESTTCCSHHHHHHHHHTT-CCSEEEECHH
T ss_pred             ---hHHHHHHHhcchhhhhh-hhhh------hhccccccccchhccccccccccccccchhhhhccccc-cccccccccc
Confidence               46778888888887643 0111      22378899999999999999999999999999999998 4777777766


Q ss_pred             hhhccCcccHHHHHHHHHhhc
Q 021156          291 LDIFGGNLAYKDVVAWHAQQE  311 (316)
Q Consensus       291 l~~~~g~~~~~~~~~~~~~~~  311 (316)
                      .  .+|--...++.+++++++
T Consensus       146 ~--~GGit~~~~i~~~a~~~g  164 (243)
T d1nu5a1         146 N--MGGIANTLKVAAVAEAAG  164 (243)
T ss_dssp             H--HTSHHHHHHHHHHHHHHT
T ss_pred             c--ccchHHHHHHHHHHHHcC
Confidence            6  666555666666666654

>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydropyrimidine dehydrogenase, domain 4
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.68  E-value=0.0012  Score=58.89  Aligned_cols=87  Identities=23%  Similarity=0.289  Sum_probs=62.5

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEec---------CC------------------cccHHH---HHHHHH-hC-CCcEEEec
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLG---------AD------------------PLSKAA---AIEALH-AY-PGGLQVGG  140 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLd---------a~------------------~~~~~~---i~~~v~-~~-~~pl~vGG  140 (316)
                      .++.++++...+.|++++.+++--         +.                  ....+.   +++.++ .. .+||+..|
T Consensus       183 ~~~~~i~~~~~~~g~~gi~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~gg~sG~~i~~~al~~v~~~~~~~~~ipIi~~G  262 (312)
T d1gtea2         183 TDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALPGFPILATG  262 (312)
T ss_dssp             SCHHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHHHHHHHHHHSTTCCEEEES
T ss_pred             hhHHHHHHHHHHhcccceEEEeecccccccccccccccccccccccccccccCcCcchhhHHHHHHHHHHcCCCcEEEEc
Confidence            467889999999999988776521         00                  001222   223333 34 48999999


Q ss_pred             CCCH-HHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHh
Q 021156          141 GINS-DNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVV  182 (316)
Q Consensus       141 GIr~-e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~  182 (316)
                      ||++ +|+.+++.+||+-|-++|++..+|   |+.++++.+..
T Consensus       263 GI~~~~d~~~~l~aGA~~Vqv~ta~~~~G---~~~i~~i~~~L  302 (312)
T d1gtea2         263 GIDSAESGLQFLHSGASVLQVCSAVQNQD---FTVIQDYCTGL  302 (312)
T ss_dssp             SCCSHHHHHHHHHTTCSEEEESHHHHTSC---TTHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHcCCCeeEECHhhhccC---hHHHHHHHHHH
Confidence            9985 999999999999999999988763   77777776543

>d1jpma1 c.1.11.2 (A:126-359) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: L-Ala-D/L-Glu epimerase
species: Bacillus subtilis [TaxId: 1423]

Probab=96.64  E-value=0.017  Score=48.71  Aligned_cols=141  Identities=13%  Similarity=0.108  Sum_probs=100.0

Q ss_pred             HHHHHHHHcCCC--EEEeCCe-eecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHH
Q 021156          145 DNSLSYIEEGAT--HVIVTSY-VFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLD  221 (316)
Q Consensus       145 e~~~~~l~~Gad--~VVigt~-~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~  221 (316)
                      ++++++.+.|..  |+=+|.. ..++    .+.+.++.+.+|+ .+-+.+|+.          .+|...   +..++++.
T Consensus        21 ~~a~~~~~~G~~~~Kikig~~~~~~d----~~~i~~ir~~~g~-~~~i~vD~N----------~~~~~~---~a~~~~~~   82 (234)
T d1jpma1          21 ADAENYLKQGFQTLKIKVGKDDIATD----IARIQEIRKRVGS-AVKLRLDAN----------QGWRPK---EAVTAIRK   82 (234)
T ss_dssp             HHHHHHHHTTCCEEEEECSSSCHHHH----HHHHHHHHHHHGG-GSEEEEECT----------TCSCHH---HHHHHHHH
T ss_pred             HHHHHHHHCCCCEEEEECCCCCHHHH----HHHHHHHHHHcCc-hhhhhhhcc----------cccchH---HHHHHHHH
Confidence            568888999988  4555653 3343    7899999999974 566779973          245432   35677888


Q ss_pred             HHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHH
Q 021156          222 FLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYK  301 (316)
Q Consensus       222 ~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~  301 (316)
                      +++.+.+-..+=.-     ...-|++.++++++.+++|+.......+..++.++.+.+ .++.+.+--..  .+|-....
T Consensus        83 le~~~~~i~~~EeP-----~~~~d~~~~~~l~~~~~~pia~gE~~~~~~~~~~~i~~~-~~d~v~~d~~~--~GGit~~~  154 (234)
T d1jpma1          83 MEDAGLGIELVEQP-----VHKDDLAGLKKVTDATDTPIMADESVFTPRQAFEVLQTR-SADLINIKLMK--AGGISGAE  154 (234)
T ss_dssp             HHHTTCCEEEEECC-----SCTTCHHHHHHHHHHCSSCEEESTTCSSHHHHHHHHHTT-CCSEEEECHHH--HTSHHHHH
T ss_pred             HHhccCceeeecCC-----ccccCHHHHHHhhccccceeecccccccchhhhhhhccC-CcCeEEEeeec--CCCHHHHH
Confidence            88766663332221     122388999999999999999999999999999999987 37777776666  66655566


Q ss_pred             HHHHHHHhhc
Q 021156          302 DVVAWHAQQE  311 (316)
Q Consensus       302 ~~~~~~~~~~  311 (316)
                      ++.+.+++.+
T Consensus       155 ~i~~~a~~~g  164 (234)
T d1jpma1         155 KINAMAEACG  164 (234)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHhcC
Confidence            6666666643

>d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Hydroxyacid oxidase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.59  E-value=0.0043  Score=56.16  Aligned_cols=73  Identities=16%  Similarity=0.071  Sum_probs=55.4

Q ss_pred             HHHHHHHHcCCCEEEEeecCCccccCCC-CHHHHHHHhhc--CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          217 ERVLDFLASYADEFLVHGVDVEGKKLGI-DDELVALLGKY--SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       217 e~a~~~~~~Ga~~ilvtdi~~dG~~~G~-d~eli~~l~~~--~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      +.+..+.+.|++.+.+..-..-..-.++ -.+.+.++++.  .++|||++|||++-.|+.+++.+|  ++.|.+|+.+
T Consensus       229 ~da~~a~~~G~d~i~vsnhggr~~d~~~~~~~~l~~i~~~~~~~~~iiadGGIR~G~Dv~KALALG--A~~V~igrp~  304 (349)
T d1tb3a1         229 EDAELAMKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALG--ARCIFLGRPI  304 (349)
T ss_dssp             HHHHHHHHTTCSEEEECCGGGTSSCSBCCHHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTT--CSCEEESHHH
T ss_pred             HHHHHHHHhhccceeeeccccccccccccchhhcceeeeccCCCeeEEeccCcCcHHHHHHHHHcC--CCEEEEChHH
Confidence            6788889999999887432111111233 35667777654  368999999999999999999999  8999999987

>d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: ThiG-like
family: ThiG-like
domain: Thiazole biosynthesis protein ThiG
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.59  E-value=0.0056  Score=52.74  Aligned_cols=72  Identities=13%  Similarity=0.176  Sum_probs=52.0

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCC-----cccHHHHHHHH-HhCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeee
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGAD-----PLSKAAAIEAL-HAYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVF  165 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~-----~~~~~~i~~~v-~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~  165 (316)
                      .||+ +++.+.+.|+.  -+.-|.+-     +..++..++.+ ...++|++|++||. ..|+..+++.|||-|.++|+..
T Consensus       136 ~D~v-~ak~le~~Gc~--~vMplgsPIGsg~Gi~n~~~l~~i~~~~~vpvivdAGIg~psdaa~AMElG~dgVLvnsaIa  212 (243)
T d1wv2a_         136 DDPI-IARQLAEIGCI--AVMPLAGLIGSGLGICNPYNLRIILEEAKVPVLVDAGVGTASDAAIAMELGCEAVLMNTAIA  212 (243)
T ss_dssp             SCHH-HHHHHHHSCCS--EEEECSSSTTCCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHHTCSEEEESHHHH
T ss_pred             CCHH-HHhHHHHcCce--eeeecccccccccccccHHHHHhccccCCcceEeecccCCHHHHHHHHHccCCEEEechHhh
Confidence            4666 77777777754  34444321     12344444544 46889999999997 6999999999999999999987


Q ss_pred             cC
Q 021156          166 NN  167 (316)
Q Consensus       166 ~~  167 (316)
                      +-
T Consensus       213 ~A  214 (243)
T d1wv2a_         213 HA  214 (243)
T ss_dssp             TS
T ss_pred             cC
Confidence            53

>d1tzza1 c.1.11.2 (A:1146-1392) Hypothetical protein Bll6730 {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: Hypothetical protein Bll6730
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=96.53  E-value=0.018  Score=49.17  Aligned_cols=152  Identities=16%  Similarity=0.118  Sum_probs=104.6

Q ss_pred             CcEEEecCCC--------H-HHHHHHHHcCCCEEE--eCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEE
Q 021156          134 GGLQVGGGIN--------S-DNSLSYIEEGATHVI--VTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAI  202 (316)
Q Consensus       134 ~pl~vGGGIr--------~-e~~~~~l~~Gad~VV--igt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v  202 (316)
                      +|+...||.-        . ++++++++.|...+=  +|....+.   +.+.++.+.+.+|+ .+-+.+|+.        
T Consensus         6 v~vYas~g~~~~~~~~~~~~~~~~~~~~~Gf~~~Kikvg~~~~~~---di~~v~~vr~~~g~-~~~l~vDan--------   73 (247)
T d1tzza1           6 VFVYAAGGYYYPGKGLSMLRGEMRGYLDRGYNVVKMKIGGAPIEE---DRMRIEAVLEEIGK-DAQLAVDAN--------   73 (247)
T ss_dssp             EEEEEECCCC----CHHHHHHHHHHHHTTTCSEEEEECSSSCHHH---HHHHHHHHHHHHTT-TCEEEEECT--------
T ss_pred             eEEEEeCCcCCCCcCHHHHHHHHHHHHHcCCCEEEEECCCCCHHH---HHHHHHHHHHhccC-CceEEeccc--------
Confidence            5677767651        1 458888999988644  45433322   37889999999975 466889983        


Q ss_pred             EeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCC--
Q 021156          203 VTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGI--  280 (316)
Q Consensus       203 ~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~--  280 (316)
                        .+|..   -+..++++.+.+.+...+  =+     -....|++.++++++.+++|+.++-.+.+..++.++++.++  
T Consensus        74 --~~~~~---~~Ai~~~~~l~~~~i~wi--Ee-----P~~~~d~~~~~~l~~~~~ipia~gE~~~~~~~~~~~i~~~a~~  141 (247)
T d1tzza1          74 --GRFNL---ETGIAYAKMLRDYPLFWY--EE-----VGDPLDYALQAALAEFYPGPMATGENLFSHQDARNLLRYGGMR  141 (247)
T ss_dssp             --TCCCH---HHHHHHHHHHTTSCCSEE--EC-----CSCTTCHHHHHHHTTTCCSCEEECTTCCSHHHHHHHHHHSCCC
T ss_pred             --ccccc---hhHHHHHhhcchhhhhhh--cc-----ccccccchhhhhhhhccccccccchhhhhhHHHHHHHHccCCc
Confidence              34642   246788888888877633  11     22334899999999999999988889999999999999872  


Q ss_pred             -CcCEEEEccchhhccCcccHHHHHHHHHhhc
Q 021156          281 -GRVDVTVGSALDIFGGNLAYKDVVAWHAQQE  311 (316)
Q Consensus       281 -g~~gVivG~Al~~~~g~~~~~~~~~~~~~~~  311 (316)
                       .++-+.+.-..  .+|-....++.+++.++.
T Consensus       142 ~~~Di~~~d~~~--~GGit~~~~i~~~a~~~g  171 (247)
T d1tzza1         142 PDRDWLQFDCAL--SYGLCEYQRTLEVLKTHG  171 (247)
T ss_dssp             TTTCEECCCTTT--TTCHHHHHHHHHHHHHTT
T ss_pred             CcceeEeecccc--ccchhHHHHHHHHHHHcC
Confidence             13455565555  556555666666666643

>d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Membrane-associated (S)-mandelate dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.52  E-value=0.0017  Score=58.56  Aligned_cols=74  Identities=22%  Similarity=0.152  Sum_probs=56.2

Q ss_pred             HHHHHHHHHcCCCEEEEeecCCccccCCC-CHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          216 DERVLDFLASYADEFLVHGVDVEGKKLGI-DDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       216 ~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~-d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      .+.+..+.+.|++.+.+-+-..-.....+ -++.+.++....++|||++|||++--|+.+++.+|  ++.|.+|+.+
T Consensus       233 ~~~~~~a~~~g~~~~~~s~~gg~~~~~~~~~~~~l~~i~~~~~~~viasGGIR~G~Dv~KALaLG--Ad~vgigrp~  307 (353)
T d1p4ca_         233 AEDADRCIAEGADGVILSNHGGRQLDCAISPMEVLAQSVAKTGKPVLIDSGFRRGSDIVKALALG--AEAVLLGRAT  307 (353)
T ss_dssp             HHHHHHHHHTTCSEEEECCGGGTSCTTCCCGGGTHHHHHHHHCSCEEECSSCCSHHHHHHHHHTT--CSCEEESHHH
T ss_pred             hhhHHHHHhcCCchhhhcccccccccccccchhcccchhcccccceeecCCcCchHHHHHHHHcC--CCEEEEcHHH
Confidence            35677888899998876432211222333 45566677667789999999999999999999999  8999999977

>d1piia1 c.1.2.4 (A:255-452) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI
species: Escherichia coli [TaxId: 562]

Probab=96.48  E-value=0.019  Score=47.63  Aligned_cols=155  Identities=13%  Similarity=0.092  Sum_probs=96.2

Q ss_pred             cCCC-HHHHHHHHHcCCCEEEeCCeeecC-CC-CCHHHHHHHHHHhcCceEEEeeeeeecC--------CeeEEEeCCcc
Q 021156          140 GGIN-SDNSLSYIEEGATHVIVTSYVFNN-GQ-MDLERLKDLVRVVGKQRLVLDLSCRKKD--------GKYAIVTDRWQ  208 (316)
Q Consensus       140 GGIr-~e~~~~~l~~Gad~VVigt~~~~~-~~-~~~eli~ei~~~~G~~~IvvslD~k~~~--------g~~~v~~~gw~  208 (316)
                      +||+ .+|++.+.++|||.+=+  .+... ++ ++++.+.++.+.+..+.+.+.++.....        +--.+..+|-.
T Consensus         6 CGIt~~~d~~~~~~~gaD~iGf--if~~~SpR~Vs~~~a~~i~~~~~~~~V~Vfv~~~~~~i~~~~~~~~~d~iQlHG~e   83 (198)
T d1piia1           6 CGLTRGQDAKAAYDAGAIYGGL--IFVATSPRCVNVEQAQEVMAAAPLQYVGVFRNHDIADVVDKAKVLSLAAVQLHGNE   83 (198)
T ss_dssp             CCCCSHHHHHHHHHHTCSEEEE--ECCTTCTTBCCHHHHHHHHHHCCCEEEEEESSCCHHHHHHHHHHHTCSEEEECSCC
T ss_pred             cCCCcHHHHHHHHhCCCCEEEE--EccCCCCCCcCHHHHHHhhhhcccccceeeeccchhhHHHhhhcccccceeecCCc
Confidence            5897 69999999999998643  44332 33 5799999999888555555554432100        10145555532


Q ss_pred             eecccCHHHHHHHHHHcC-----------------------CCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeC
Q 021156          209 KFSDVYLDERVLDFLASY-----------------------ADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGG  265 (316)
Q Consensus       209 ~~~~~~~~e~a~~~~~~G-----------------------a~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGG  265 (316)
                      .      .+.++.+.+..                       ++.++ .|-..-|+..-+||++++.   ....|++.+||
T Consensus        84 ~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l-ld~~~gGtG~~fdw~~~~~---~~~~~~~LAGG  153 (198)
T d1piia1          84 E------QLYIDTLREALPAHVAIWKALSVGETLPAREFQHVDKYV-LDNGQGGSGQRFDWSLLNG---QSLGNVLLAGG  153 (198)
T ss_dssp             C------HHHHHHHHHHSCTTSEEEEEEECSSSCCCCCCTTCCEEE-EESCSCCSSCCCCGGGGTT---SCCTTEEEESS
T ss_pred             c------HHHHHHHhccccccccceeccchhhhhhHHHhhhhcccc-cCCcccccceeeehhhhcc---cccceeEEecC
Confidence            1      12333332221                       22222 3333446667789987643   34569999999


Q ss_pred             CCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHHh
Q 021156          266 VTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       266 I~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~~  309 (316)
                      + +++.+.++.+.+  ..+|=|.+++=.-.|.=+.+.+.++.++
T Consensus       154 l-~~~Nv~~a~~~~--p~gvDvsSGvE~~pG~KD~~ki~~f~~~  194 (198)
T d1piia1         154 L-GADNCVEAAQTG--CAGLDFNSAVESQPGIKDARLLASVFQT  194 (198)
T ss_dssp             C-CTTTHHHHHTTC--CSEEEECGGGEEETTEECHHHHHHHHHH
T ss_pred             C-CHHHHHHHHhcC--CCEEEeCCcccCCCCCcCHHHHHHHHHH
Confidence            9 788999988766  8899999998111144467777766654

>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.47  E-value=0.0013  Score=55.98  Aligned_cols=36  Identities=25%  Similarity=0.484  Sum_probs=33.5

Q ss_pred             CCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecC
Q 021156          132 YPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNN  167 (316)
Q Consensus       132 ~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~  167 (316)
                      ..++++|+|||+.+.+..+.++|||.+|+||+.++.
T Consensus       167 ~~~~I~vDGGIn~~~i~~l~~aGad~~V~Gsaif~~  202 (217)
T d2flia1         167 LSFDIEVDGGVDNKTIRACYEAGANVFVAGSYLFKA  202 (217)
T ss_dssp             CCCEEEEESSCCTTTHHHHHHHTCCEEEESHHHHTS
T ss_pred             CCeEEEEeCCCCHHHHHHHHHCCCCEEEEchHHhCC
Confidence            468999999999999999999999999999999975

>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Bacillus subtilis [TaxId: 1423]

Probab=96.46  E-value=0.0082  Score=53.38  Aligned_cols=125  Identities=14%  Similarity=0.163  Sum_probs=75.8

Q ss_pred             HHHHHHHH-HcCCCEEEeCCeeecC---------CCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceeccc
Q 021156          144 SDNSLSYI-EEGATHVIVTSYVFNN---------GQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDV  213 (316)
Q Consensus       144 ~e~~~~~l-~~Gad~VVigt~~~~~---------~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~  213 (316)
                      .+...+.. ..|++.+.+.......         ....++.++++.+..+ ..+++-.          +   +     ..
T Consensus       109 ~~~~~~~~~~~g~~ai~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~-~~vivk~----------v---~-----~~  169 (329)
T d1p0ka_         109 AAQAKEAVEMIGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSRVS-VPVIVKE----------V---G-----FG  169 (329)
T ss_dssp             HHHHHHHHHHTTCSEEEEEECTTTTC--------CTTHHHHHHHHHHHCS-SCEEEEE----------E---S-----SC
T ss_pred             HHHHHHHHHHcCCCEEEecccccchhhhccccccccchHHHHHHHHHHcC-CCcEEEe----------c---C-----Cc
Confidence            45555554 4788887765332111         1123577777777663 3332211          0   0     01


Q ss_pred             CHHHHHHHHHHcCCCEEEEeecCCccc------------------cCCC-CHHHHHHHhh-cCCCcEEEEeCCCCHHHHH
Q 021156          214 YLDERVLDFLASYADEFLVHGVDVEGK------------------KLGI-DDELVALLGK-YSPIPVTYAGGVTTMADLE  273 (316)
Q Consensus       214 ~~~e~a~~~~~~Ga~~ilvtdi~~dG~------------------~~G~-d~eli~~l~~-~~~iPVIasGGI~s~eDi~  273 (316)
                      ...+.++.+.+.|++.+.+-.-  -|+                  ..++ ..+.+.++.. ..++|||+.|||++-.|+.
T Consensus       170 ~~~~~a~~~~~~GaD~i~v~~~--gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~v~viadGGIr~g~Dv~  247 (329)
T d1p0ka_         170 MSKASAGKLYEAGAAAVDIGGY--GGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEFPASTMIASGGLQDALDVA  247 (329)
T ss_dssp             CCHHHHHHHHHHTCSEEEEEC-----------------CCGGGGTTCSCCHHHHHHHHHHHCTTSEEEEESSCCSHHHHH
T ss_pred             chHHHHHHHHhcCCCEEEEcCC--CCCCccccchhhcccCccchhHhHHHHHHHHHHHHhhcCCceEEEcCCcccHHHHH
Confidence            1246777888999998876321  111                  0111 2344444433 3479999999999999999


Q ss_pred             HHHHhCCCcCEEEEccch
Q 021156          274 KIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       274 ~l~~~G~g~~gVivG~Al  291 (316)
                      +++.+|  +++|++|+++
T Consensus       248 KAlalG--AdaV~iGr~~  263 (329)
T d1p0ka_         248 KAIALG--ASCTGMAGHF  263 (329)
T ss_dssp             HHHHTT--CSEEEECHHH
T ss_pred             HHHHcC--CCchhccHHH
Confidence            999999  8999999977

>d1muca1 c.1.11.2 (A:131-372) Muconate-lactonizing enzyme {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: Muconate-lactonizing enzyme
species: Pseudomonas putida [TaxId: 303]

Probab=96.45  E-value=0.018  Score=49.01  Aligned_cols=139  Identities=13%  Similarity=0.126  Sum_probs=97.5

Q ss_pred             HHHHHHH-cCCCE--EEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH
Q 021156          146 NSLSYIE-EGATH--VIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF  222 (316)
Q Consensus       146 ~~~~~l~-~Gad~--VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~  222 (316)
                      ++.+.++ .|...  +=+|....+.   +.+.++.+.+.+| +.+-+.+|+.          .+|...   +..++++.+
T Consensus        23 ~~~~~~~~~G~~~~KiKvG~~~~~~---Di~~i~~ir~~~g-~~~~l~vDaN----------~~~~~~---~A~~~~~~l   85 (242)
T d1muca1          23 EARHMLEIRRHRVFKLKIGANPVEQ---DLKHVVTIKRELG-DSASVRVDVN----------QYWDES---QAIRACQVL   85 (242)
T ss_dssp             HHHHHHHTTSCSEEEEECSSSCHHH---HHHHHHHHHHHHG-GGSEEEEECT----------TCBCHH---HHHHHHHHH
T ss_pred             HHHHHHHHCCCCEEEEEECCCCHHH---HHHHHHHHHHHhC-CCCEEEEecC----------CCCcHH---HHHHHHHHh
Confidence            3444454 48774  4556543222   3889999999997 4577889973          356422   467889999


Q ss_pred             HHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHH
Q 021156          223 LASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKD  302 (316)
Q Consensus       223 ~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~  302 (316)
                      .+.++..+       +.-..-.|++.++++++.+++|+.+.-.+.+..++.++++.+ .++.+.+--+.  .+|-....+
T Consensus        86 ~~~~i~~i-------EeP~~~~d~~~~~~L~~~~~~pIa~~E~~~~~~~~~~~i~~~-~~d~~~~d~~~--~GGit~~~~  155 (242)
T d1muca1          86 GDNGIDLI-------EQPISRINRGGQVRLNQRTPAPIMADESIESVEDAFSLAADG-AASIFALKIAK--NGGPRAVLR  155 (242)
T ss_dssp             HHTTCCCE-------ECCBCTTCHHHHHHHHHHCSSCEEESTTCSSHHHHHHHHHHT-CCSEEEECHHH--HTSHHHHHH
T ss_pred             hhhhHHHh-------hcchhhhhhhhhhhhhhhhhheeecccccccccchhhhhhcc-ccccccccccc--chhHHHHHH
Confidence            98887643       222233478999999999999999999999999999999988 36667776555  666555666


Q ss_pred             HHHHHHhhc
Q 021156          303 VVAWHAQQE  311 (316)
Q Consensus       303 ~~~~~~~~~  311 (316)
                      +.++++++.
T Consensus       156 i~~~A~~~g  164 (242)
T d1muca1         156 TAQIAEAAG  164 (242)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHhCC
Confidence            666666654

>d2mnra1 c.1.11.2 (A:133-359) Mandelate racemase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: Mandelate racemase
species: Pseudomonas putida [TaxId: 303]

Probab=96.44  E-value=0.014  Score=49.10  Aligned_cols=140  Identities=13%  Similarity=0.061  Sum_probs=97.0

Q ss_pred             HHHHHHHHcCCCE--EEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH
Q 021156          145 DNSLSYIEEGATH--VIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF  222 (316)
Q Consensus       145 e~~~~~l~~Gad~--VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~  222 (316)
                      |.++++.+.|...  +=+|....+.   +.+.++.+.+.+|+ .+-+.+|+.          .+|.-.   ...++++.+
T Consensus        18 e~~~~~~~~G~~~~KikvG~~~~~~---di~~i~~ir~~~g~-~~~l~vDaN----------~~~~~~---~A~~~~~~l   80 (227)
T d2mnra1          18 ERAVTAAELGFRAVKTKIGYPALDQ---DLAVVRSIRQAVGD-DFGIMVDYN----------QSLDVP---AAIKRSQAL   80 (227)
T ss_dssp             HHHHHHHHTTCSEEEEECCCSSHHH---HHHHHHHHHHHHCT-TSEEEEECT----------TCSCHH---HHHHHHHHH
T ss_pred             HHHHHHHHCCCCEEEEccCCCCHHH---HHHHHHHHHHHhCC-CcEEEEecc----------ccCChH---HHHHHHHHh
Confidence            4577788888775  4445443222   38899999999974 566788973          356422   467788889


Q ss_pred             HHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHH
Q 021156          223 LASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKD  302 (316)
Q Consensus       223 ~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~  302 (316)
                      .+.++..+  =+     =...-|++.++++++.+++|+.+.-.+.+.+++..+.+.+ .++.+.+--..  .+|-....+
T Consensus        81 ~~~~~~~i--Ee-----P~~~~~~~~~~~l~~~~~ipia~gE~~~~~~~~~~~~~~~-~~d~~~~d~~~--~GGit~~~~  150 (227)
T d2mnra1          81 QQEGVTWI--EE-----PTLQHDYEGHQRIQSKLNVPVQMGENWLGPEEMFKALSIG-ACRLAMPDAMK--IGGVTGWIR  150 (227)
T ss_dssp             HHHTCSEE--EC-----CSCTTCHHHHHHHHHTCSSCEEECTTCCSHHHHHHHHHTT-CCSEECCBTTT--TTHHHHHHH
T ss_pred             hhchhhhh--cC-----cccccchhhhHHHHHHcCCccccCceeEeechhhhhHhcC-ceeeeeccccc--ccchhhHHH
Confidence            98887643  11     1122378999999999999999888999999999999998 36666665555  555444555


Q ss_pred             HHHHHHhhc
Q 021156          303 VVAWHAQQE  311 (316)
Q Consensus       303 ~~~~~~~~~  311 (316)
                      +.+++++..
T Consensus       151 i~~~a~~~g  159 (227)
T d2mnra1         151 ASALAQQFG  159 (227)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHcC
Confidence            555555543

>d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.34  E-value=0.0026  Score=56.62  Aligned_cols=57  Identities=23%  Similarity=0.122  Sum_probs=47.3

Q ss_pred             HHHHHHHhhcC-CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156          246 DELVALLGKYS-PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVA  305 (316)
Q Consensus       246 ~eli~~l~~~~-~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~  305 (316)
                      ++++..+.+.+ ..|++++|||.|.+|+.+.+.+|  ++.|.+++++ .|+|+..++++.+
T Consensus       230 l~~v~~~~~~~~~~~Iig~GGI~s~~Da~e~i~aG--As~Vqv~Tal-~~~Gp~~i~~i~~  287 (312)
T d2b4ga1         230 LANVNAFFRRCPDKLVFGCGGVYSGEEAFLHILAG--ASMVQVGTAL-HDEGPIIFARLNK  287 (312)
T ss_dssp             HHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHHT--EEEEEESHHH-HHHCTTHHHHHHH
T ss_pred             hHHHHHHHHHcCCCceeecCCcCCHHHHHHHHHcC--CChheeehhh-HhcCcHHHHHHHH
Confidence            45677776544 67899999999999999999999  8999999997 5788877766655

>d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=96.30  E-value=0.002  Score=54.90  Aligned_cols=48  Identities=19%  Similarity=0.261  Sum_probs=38.3

Q ss_pred             CCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHH
Q 021156          132 YPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVR  180 (316)
Q Consensus       132 ~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~  180 (316)
                      .+.+++|+|||+.+.+..+.++|||.+|+||+.++++.. .+.+.++.+
T Consensus       167 ~~~~I~VDGGIn~~~i~~l~~aGad~~V~GS~if~~~d~-~~~i~~lr~  214 (220)
T d1h1ya_         167 PSLDIEVDGGLGPSTIDVAASAGANCIVAGSSIFGAAEP-GEVISALRK  214 (220)
T ss_dssp             TTSEEEEESSCSTTTHHHHHHHTCCEEEESHHHHTSSCH-HHHHHHHHH
T ss_pred             CCceEEEEecCCHHHHHHHHHCCCCEEEECHHHHCCCCH-HHHHHHHHH
Confidence            458999999999999999999999999999999976321 244444443

>d2chra1 c.1.11.2 (A:127-370) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: Chlormuconate cycloisomerase
species: Alcaligenes eutrophus [TaxId: 106590]

Probab=96.30  E-value=0.016  Score=49.38  Aligned_cols=137  Identities=10%  Similarity=0.071  Sum_probs=97.8

Q ss_pred             HHHHHHcCCCEEE--eCC-eeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHH
Q 021156          147 SLSYIEEGATHVI--VTS-YVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFL  223 (316)
Q Consensus       147 ~~~~l~~Gad~VV--igt-~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~  223 (316)
                      ++.+.+.|...+=  +|. ....|    .+.++.+.+.+|+ .+-+.+|+.          .+|...   +..++++++.
T Consensus        25 ~~~~~~~Gf~~~KiKvG~~~~~~D----~~~v~~ir~~~g~-~~~l~vDaN----------~~~~~~---~A~~~~~~l~   86 (244)
T d2chra1          25 VEMIERRRHNRFKVKLGFRSPQDD----LIHMEALSNSLGS-KAYLRVDVN----------QAWDEQ---VASVYIPELE   86 (244)
T ss_dssp             HHHHHTTSCCEEEEECSSSCHHHH----HHHHHHHHHHTTT-TSEEEEECT----------TCCCTH---HHHHHHHHHH
T ss_pred             HHHHHhCCCCEEEEEcCCCCHHHH----HHHHHHHHHhcCC-CceEEEeCC----------CCcchH---HHHHHHHHHh
Confidence            3444556988644  454 23333    8899999999974 466889973          356432   4667888888


Q ss_pred             HcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHH
Q 021156          224 ASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDV  303 (316)
Q Consensus       224 ~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~  303 (316)
                      +.++..+= -.+      .--|++.++++++.+++|+...-.+.+.+++.++.+.+ .++.+.+.-+.  .+|-....++
T Consensus        87 ~~~i~~iE-eP~------~~~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~-~~d~v~~d~~~--~GGit~~~~i  156 (244)
T d2chra1          87 ALGVELIE-QPV------GRENTQALRRLSDNNRVAIMADESLSTLASAFDLARDR-SVDVFSLKLCN--MGGVSATQKI  156 (244)
T ss_dssp             TTTCCEEE-CCS------CSSCHHHHHHHHHHCSSEEEESSSCCSHHHHHHHHTTT-CCSEECCCHHH--HTSHHHHHHH
T ss_pred             hhhHHHHh-hhh------hhccchhhhhhccceeeeeeecccccccchhhhhhhcc-eeEEEeecccc--ccchHHHHHH
Confidence            88765320 111      22278999999999999999999999999999999987 47888888777  6776667777


Q ss_pred             HHHHHhhc
Q 021156          304 VAWHAQQE  311 (316)
Q Consensus       304 ~~~~~~~~  311 (316)
                      .++++++.
T Consensus       157 ~~~a~~~g  164 (244)
T d2chra1         157 AAVAEASG  164 (244)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHcC
Confidence            77776654

>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Thermus thermophilus [TaxId: 274]

Probab=96.26  E-value=0.0042  Score=54.53  Aligned_cols=72  Identities=24%  Similarity=0.276  Sum_probs=52.4

Q ss_pred             HHHHHHHHHcCCCEEEEeecCCccc---------c-----------CCC-CHHHHHHHhhc-CCCcEEEEeCCCCHHHHH
Q 021156          216 DERVLDFLASYADEFLVHGVDVEGK---------K-----------LGI-DDELVALLGKY-SPIPVTYAGGVTTMADLE  273 (316)
Q Consensus       216 ~e~a~~~~~~Ga~~ilvtdi~~dG~---------~-----------~G~-d~eli~~l~~~-~~iPVIasGGI~s~eDi~  273 (316)
                      .+.++.+.+.|++.+++-..  .|+         .           .|. -.+.+.++.+. .++|||+.|||++-.|+.
T Consensus       173 ~e~a~~~~~aGvd~i~vsn~--gg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~al~~~~~~~~~i~Ii~dGGIr~g~Dv~  250 (310)
T d1vcfa1         173 REAALALRDLPLAAVDVAGA--GGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLPHLPLVASGGVYTGTDGA  250 (310)
T ss_dssp             HHHHHHHTTSCCSEEECCCB--TSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHCSSSCEEEESSCCSHHHHH
T ss_pred             HHHHHHHHHcCCCEEEeccc--cccchhhcccccccCchhhhhhhhcchHHHHHHHHHHhhcCCCeEEeCCCCCchHHHH
Confidence            47788999999998865321  111         0           011 22344444433 479999999999999999


Q ss_pred             HHHHhCCCcCEEEEccch
Q 021156          274 KIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       274 ~l~~~G~g~~gVivG~Al  291 (316)
                      +++.+|  +++|++||++
T Consensus       251 KALalG--AdaV~iGr~~  266 (310)
T d1vcfa1         251 KALALG--ADLLAVARPL  266 (310)
T ss_dssp             HHHHHT--CSEEEECGGG
T ss_pred             HHHHhC--CCEeeEhHHH
Confidence            999999  9999999998

>d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Glycolate oxidase
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=96.21  E-value=0.0068  Score=54.82  Aligned_cols=74  Identities=20%  Similarity=0.133  Sum_probs=55.5

Q ss_pred             HHHHHHHHHcCCCEEEEeecCCccccCCC-CHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          216 DERVLDFLASYADEFLVHGVDVEGKKLGI-DDELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       216 ~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~-d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      .+.+..+.+.|++.+.+-.-...+...++ -.+.+..+++.+  ++|||++|||++--|+.+++.+|  ++.|.+|+.+
T Consensus       235 ~~da~~a~~~g~~~~~vsnhggr~ld~~~~~~~~l~~i~~~~~~~~~iiadGGIR~G~Di~KALaLG--Ad~vgigrp~  311 (359)
T d1goxa_         235 AEDARLAVQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALG--AAGVFIGRPV  311 (359)
T ss_dssp             HHHHHHHHHTTCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTTTSSCEEEESSCCSHHHHHHHHHHT--CSEEEECHHH
T ss_pred             hHHHHHHHHccccceecccccccccccccchhhhchhhhhccCCccceeeccCcCcHHHHHHHHHcC--CCEEEEcHHH
Confidence            35677888999998876443222223333 456666665543  58999999999999999999999  8999999976

>d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=96.04  E-value=0.0016  Score=55.59  Aligned_cols=36  Identities=31%  Similarity=0.547  Sum_probs=33.7

Q ss_pred             CCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecC
Q 021156          132 YPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNN  167 (316)
Q Consensus       132 ~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~  167 (316)
                      .+.+++|+|||+.+.+..+.++||+.+|.||+.+++
T Consensus       170 ~~~~I~VDGGIn~~~i~~l~~~Gad~~V~GS~if~~  205 (221)
T d1tqja_         170 LDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNA  205 (221)
T ss_dssp             CCCEEEEESSCCTTTTHHHHHHTCCEEEESHHHHTS
T ss_pred             cceEEEEECCcCHHHHHHHHHcCCCEEEEChHHhCC
Confidence            568899999999999999999999999999999986

>d1sjda1 c.1.11.2 (A:126-367) N-acylamino acid racemase {Amycolatopsis sp. [TaxId: 37632]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: N-acylamino acid racemase
species: Amycolatopsis sp. [TaxId: 37632]

Probab=96.03  E-value=0.054  Score=45.64  Aligned_cols=149  Identities=15%  Similarity=0.058  Sum_probs=102.3

Q ss_pred             CcEEEecCC--CH----HHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCc
Q 021156          134 GGLQVGGGI--NS----DNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRW  207 (316)
Q Consensus       134 ~pl~vGGGI--r~----e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw  207 (316)
                      +|+.+-+|+  +.    ++++++++.|...+=+-.....    +.+.++.+.+.+|+ .+-+.+|+.          .+|
T Consensus         5 ipvy~s~g~~~~~~~~~~~~~~~~~~Gf~~~Kikvg~~~----Di~~i~~ir~~~g~-~~~l~vDaN----------~~~   69 (242)
T d1sjda1           5 VPCGVSVGIMDTIPQLLDVVGGYLDEGYVRIKLKIEPGW----DVEPVRAVRERFGD-DVLLQVDAN----------TAY   69 (242)
T ss_dssp             EEBEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECBTTB----SHHHHHHHHHHHCT-TSEEEEECT----------TCC
T ss_pred             eEeeEEeCCCCCHHHHHHHHHHHHHcCCCEEEEECCchh----HHHHHHHHHHHhCC-CeeEeeccc----------ccc
Confidence            677777776  22    4477788899886544332234    49999999999974 567889973          245


Q ss_pred             ceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEE
Q 021156          208 QKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTV  287 (316)
Q Consensus       208 ~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gViv  287 (316)
                      ...   +..++++ +.+.+...+  =+     =....|++.++++++.+++|+.+.--..+..++.++.+.+ .++.+.+
T Consensus        70 ~~~---~a~~~~~-l~~~~~~~i--Ee-----P~~~~d~~~~~~l~~~~~~pia~gE~~~~~~~~~~~~~~~-~~d~~~~  137 (242)
T d1sjda1          70 TLG---DAPQLAR-LDPFGLLLI--EQ-----PLEEEDVLGHAELARRIQTPICLDESIVSARAAADAIKLG-AVQIVNI  137 (242)
T ss_dssp             CGG---GHHHHHT-TGGGCCSEE--EC-----CSCTTCHHHHHHHHTTCSSCEEESTTCCSHHHHHHHHHTT-CCSEEEE
T ss_pred             chh---hhhHHhh-hhhhhhHHH--Hh-----hhhhhhHHHHHHHHhccCcccccccccccchhhhhhhhcC-ccCEEEe
Confidence            432   3445554 666665532  11     1222488999999999999998888899999999999998 3777777


Q ss_pred             ccchhhccCcccHHHHHHHHHhhc
Q 021156          288 GSALDIFGGNLAYKDVVAWHAQQE  311 (316)
Q Consensus       288 G~Al~~~~g~~~~~~~~~~~~~~~  311 (316)
                      --+.  .+|--...++.+.+++++
T Consensus       138 d~~~--~GGit~~~~i~~~A~~~~  159 (242)
T d1sjda1         138 KPGR--VGGYLEARRVHDVCAAHG  159 (242)
T ss_dssp             CTTT--TTSHHHHHHHHHHHHHTT
T ss_pred             cccc--CccchhhhHHHHHHHHCC
Confidence            7666  555555566666666644

>d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.90  E-value=0.0041  Score=52.94  Aligned_cols=36  Identities=25%  Similarity=0.406  Sum_probs=33.4

Q ss_pred             CCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecC
Q 021156          132 YPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNN  167 (316)
Q Consensus       132 ~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~  167 (316)
                      -+..++|+|||+.+.+..+.++|||.+|.||+.++.
T Consensus       169 ~~~~I~VDGGIn~~~i~~l~~aGad~iV~GS~if~~  204 (221)
T d1tqxa_         169 KNLNIQVDGGLNIETTEISASHGANIIVAGTSIFNA  204 (221)
T ss_dssp             TTCEEEEESSCCHHHHHHHHHHTCCEEEESHHHHTC
T ss_pred             CCcceEEEcccCHHhHHHHHHcCCCEEEEChHHHCC
Confidence            458899999999999999999999999999999975

>d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Flavocytochrome b2, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.85  E-value=0.031  Score=51.47  Aligned_cols=73  Identities=18%  Similarity=0.134  Sum_probs=50.7

Q ss_pred             HHHHHHHHcCCCEEEEeecCCccccCCC-CHHHHHHHh---h----cCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEc
Q 021156          217 ERVLDFLASYADEFLVHGVDVEGKKLGI-DDELVALLG---K----YSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVG  288 (316)
Q Consensus       217 e~a~~~~~~Ga~~ilvtdi~~dG~~~G~-d~eli~~l~---~----~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG  288 (316)
                      +.+..+.+.|++.+++-.-........+ ....+..+.   +    ..++|||++|||++--|+.+++.+|  ++.|.+|
T Consensus       258 ~da~~~~~~G~~~i~vsnhggr~~d~~~~~~~~l~~i~~~~~~~~v~~~~~viadGGIR~G~DVaKALALG--AdaVgig  335 (414)
T d1kbia1         258 EDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLG--AKGVGLG  335 (414)
T ss_dssp             HHHHHHHHTTCSEEEECCTTTTSSTTCCCHHHHHHHHHHHHHTTTCBTTBEEEEESSCCSHHHHHHHHHHT--CSEEEEC
T ss_pred             HHHHHHHhcCCcceeeccccccccccccccccchhhhhhhhhhhccCCceeEEecCCcCcHHHHHHHHHcC--CCEEEEc
Confidence            5677888999998876332211111222 222233322   1    1358999999999999999999999  8999999


Q ss_pred             cch
Q 021156          289 SAL  291 (316)
Q Consensus       289 ~Al  291 (316)
                      +.+
T Consensus       336 rp~  338 (414)
T d1kbia1         336 RPF  338 (414)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            987

>d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=95.85  E-value=0.0018  Score=55.74  Aligned_cols=36  Identities=31%  Similarity=0.498  Sum_probs=33.9

Q ss_pred             CCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecC
Q 021156          132 YPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNN  167 (316)
Q Consensus       132 ~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~  167 (316)
                      .+..++|+|||+.+.+..+.++|||.+|+||+.+++
T Consensus       178 ~~~~I~vDGGIn~~~i~~l~~~Gad~~V~GS~if~~  213 (230)
T d1rpxa_         178 LNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA  213 (230)
T ss_dssp             CCCEEEEESSCCTTTHHHHHHHTCCEEEESHHHHTS
T ss_pred             CceEEEEECCcCHHHHHHHHHcCCCEEEEChHHHCC
Confidence            568999999999999999999999999999999976

>d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Pentaerythritol tetranirate reductase
species: Enterobacter cloacae [TaxId: 550]

Probab=95.73  E-value=0.0091  Score=54.34  Aligned_cols=84  Identities=13%  Similarity=0.102  Sum_probs=63.6

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCC--cccHHHHHHHHH-hCCCcEEEecCCCHHHHHHHHHcC-CCEEEeCCeeecCCC
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGAD--PLSKAAAIEALH-AYPGGLQVGGGINSDNSLSYIEEG-ATHVIVTSYVFNNGQ  169 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~--~~~~~~i~~~v~-~~~~pl~vGGGIr~e~~~~~l~~G-ad~VVigt~~~~~~~  169 (316)
                      +.+++++.+.+.|++.+|+-.-+-.  ..-.....+.++ .+..|+.++|+++.+.++++++.| ||.|.+|-.++.|  
T Consensus       251 e~~~~~~~l~~~gvd~i~vs~~~~~~~~~~~~~~~~~~~~~~~~~vi~~G~~t~~~ae~~l~~G~~DlV~~gR~liad--  328 (363)
T d1vyra_         251 DALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQKVRERFHGVIIGAGAYTAEKAEDLIGKGLIDAVAFGRDYIAN--  328 (363)
T ss_dssp             HHHHHHHHHHHTTCSEEEEECCBTTBCCCCCHHHHHHHHHHCCSEEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHC--
T ss_pred             HHHHHHHHHHhcCCeeeecccCCccCCccccHHHHHHHHHhcCceEEecCCCCHHHHHHHHHCCCcceehhhHHHHHC--
Confidence            5567888888899887777644321  223334444454 577888887766679999999999 8999999999998  


Q ss_pred             CCHHHHHHHHHH
Q 021156          170 MDLERLKDLVRV  181 (316)
Q Consensus       170 ~~~eli~ei~~~  181 (316)
                        |+++.++.+.
T Consensus       329 --P~~~~K~~~g  338 (363)
T d1vyra_         329 --PDLVARLQKK  338 (363)
T ss_dssp             --TTHHHHHHHT
T ss_pred             --ccHHHHHHhC
Confidence              9999999764

>d1nsja_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI
species: Thermotoga maritima [TaxId: 2336]

Probab=95.64  E-value=0.11  Score=42.87  Aligned_cols=166  Identities=14%  Similarity=0.117  Sum_probs=96.3

Q ss_pred             cCCC-HHHHHHHHHcCCCEEEeCCeeecC-CC-CCHHHHHHHHHHhcC--ceEEEeeeeeec--------CCeeEEEeCC
Q 021156          140 GGIN-SDNSLSYIEEGATHVIVTSYVFNN-GQ-MDLERLKDLVRVVGK--QRLVLDLSCRKK--------DGKYAIVTDR  206 (316)
Q Consensus       140 GGIr-~e~~~~~l~~Gad~VVigt~~~~~-~~-~~~eli~ei~~~~G~--~~IvvslD~k~~--------~g~~~v~~~g  206 (316)
                      +||+ .+|++.+.++|||.+  |-.+.+. ++ ++++.+.++.+...+  ..+.+-++-...        -+-..+..+|
T Consensus         7 CGit~~~da~~~~~~gad~i--GfI~~~~SpR~Vs~~~a~~i~~~~~~~~~~V~V~v~~~~~~i~~~~~~~~~~~vQlhg   84 (205)
T d1nsja_           7 CGITNLEDALFSVESGADAV--GFVFYPKSKRYISPEDARRISVELPPFVFRVGVFVNEEPEKILDVASYVQLNAVQLHG   84 (205)
T ss_dssp             CCCCSHHHHHHHHHHTCSEE--EEECCTTCTTBCCHHHHHHHHHHSCSSSEEEEEESSCCHHHHHHHHHHHTCSEEEECS
T ss_pred             cCCCcHHHHHHHHhCCCCEE--eEeccCCCCCccCHHHHHHHHhhhcccceeeccccccHHHHHHhhhhhccccchhccc
Confidence            5787 699999999999986  4344332 32 578889999877642  233333331100        0112455554


Q ss_pred             cceec---------------ccCHHHHHHHHHHcCCCEEEEeecCC--ccccCCCCHHHHHHHhhcCCCcEEEEeCCCCH
Q 021156          207 WQKFS---------------DVYLDERVLDFLASYADEFLVHGVDV--EGKKLGIDDELVALLGKYSPIPVTYAGGVTTM  269 (316)
Q Consensus       207 w~~~~---------------~~~~~e~a~~~~~~Ga~~ilvtdi~~--dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~  269 (316)
                      -....               ............+.....+++...+.  -|+...+||++++.+.... .|++.+||+.. 
T Consensus        85 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~GGtG~~~dw~~~~~~~~~~-~~~~LAGGl~~-  162 (205)
T d1nsja_          85 EEPIELCRKIAERILVIKAVGVSNERDMERALNYREFPILLDTKTPEYGGSGKTFDWSLILPYRDRF-RYLVLSGGLNP-  162 (205)
T ss_dssp             CCCHHHHHHHHTTSEEEEEEEESSHHHHHHHGGGTTSCEEEEESCSSSSSCCSCCCGGGTGGGGGGS-SCEEEESSCCT-
T ss_pred             hhhHHHHhhcccceeeeeeccccchHHHHHHhhcccceeeeccccccCCCCCcccchhhcccchhcc-cceeeecCCCH-
Confidence            21100               00111122222233333444433322  3666778999888876543 48999999976 


Q ss_pred             HHHHHHHH-hCCCcCEEEEccchhhccCcccHHHHHHHHHhhc
Q 021156          270 ADLEKIKV-AGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQQE  311 (316)
Q Consensus       270 eDi~~l~~-~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~~~~  311 (316)
                      +.+.++++ .+  .++|=|.+++=...|.=+++.+.+++++-+
T Consensus       163 ~Nv~~ai~~~~--p~gvDvsSgvE~~~G~KD~~ki~~f~~~vr  203 (205)
T d1nsja_         163 ENVRSAIDVVR--PFAVDVSSGVEAFPGKKDHDSIKMFIKNAK  203 (205)
T ss_dssp             TTHHHHHHHHC--CSEEEESGGGEEETTEECHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC--CCEEEEcCcccCCCCccCHHHHHHHHHHHh
Confidence            66776665 56  788889999822235567888888776643

>d1rvka1 c.1.11.2 (A:127-381) Hypothetical protein Atu3453 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: Hypothetical protein Atu3453
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.59  E-value=0.095  Score=44.39  Aligned_cols=139  Identities=12%  Similarity=-0.029  Sum_probs=94.9

Q ss_pred             HHHHHHHHcCCCEEEe--CCe-------eecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCH
Q 021156          145 DNSLSYIEEGATHVIV--TSY-------VFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYL  215 (316)
Q Consensus       145 e~~~~~l~~Gad~VVi--gt~-------~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~  215 (316)
                      +.++++.+.|...+=+  |..       ..+    +.+.++.+.+.+|+ .+-+.+|+.          .+|...   +.
T Consensus        29 ~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~~----d~~~v~avR~~~G~-~~~l~vDaN----------~~~~~~---~A   90 (255)
T d1rvka1          29 RFAETLVKRGYKGIKLHTWMPPVSWAPDVKM----DLKACAAVREAVGP-DIRLMIDAF----------HWYSRT---DA   90 (255)
T ss_dssp             HHHHHHHHHTCSEEEEECCCTTSTTCCCHHH----HHHHHHHHHHHHCT-TSEEEEECC----------TTCCHH---HH
T ss_pred             HHHHHHHHcCCCEEEEcCCCCccccccCHHH----HHHHHHHHHHHcCC-ccceecccc----------cccccc---hh
Confidence            3466677788776544  321       123    37899999999985 566888983          356422   46


Q ss_pred             HHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHH-HHHHHHHhCCCcCEEEEccchhhc
Q 021156          216 DERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMA-DLEKIKVAGIGRVDVTVGSALDIF  294 (316)
Q Consensus       216 ~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~e-Di~~l~~~G~g~~gVivG~Al~~~  294 (316)
                      .++++.+.+.++..+= -.+      ...|++.++++++.+++|+.+..-+.+.. +...+++.+ .++.+.+--..  .
T Consensus        91 ~~~~~~l~~~~l~~iE-eP~------~~~d~~~~~~l~~~~~~pI~~~E~~~~~~~~~~~~i~~~-~~dii~~d~~~--~  160 (255)
T d1rvka1          91 LALGRGLEKLGFDWIE-EPM------DEQSLSSYKWLSDNLDIPVVGPESAAGKHWHRAEWIKAG-ACDILRTGVND--V  160 (255)
T ss_dssp             HHHHHHHHTTTCSEEE-CCS------CTTCHHHHHHHHHHCSSCEEECSSCSSHHHHHHHHHHTT-CCSEEEECHHH--H
T ss_pred             hhhhhhcccchhhhhc-CCc------ccccHHHHHHHHHhcccceeehhhcccchhhhhhhhhhc-hhhhccccccc--c
Confidence            7888999988876430 112      22378899999999999998888888864 678888887 36666676666  6


Q ss_pred             cCcccHHHHHHHHHhhc
Q 021156          295 GGNLAYKDVVAWHAQQE  311 (316)
Q Consensus       295 ~g~~~~~~~~~~~~~~~  311 (316)
                      +|-....++.+++.++.
T Consensus       161 GGit~~~~i~~~a~~~g  177 (255)
T d1rvka1         161 GGITPALKTMHLAEAFG  177 (255)
T ss_dssp             TSHHHHHHHHHHHHHTT
T ss_pred             ccchHHHHHHHHHHHhc
Confidence            66555666666666543

>d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: NADPH dehydrogenase NamA
species: Bacillus subtilis [TaxId: 1423]

Probab=95.45  E-value=0.012  Score=52.87  Aligned_cols=87  Identities=13%  Similarity=0.080  Sum_probs=65.8

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCC-------cccHHHHHHHHH-hCCCcEEEecCCC-HHHHHHHHHcC-CCEEEeCC
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGAD-------PLSKAAAIEALH-AYPGGLQVGGGIN-SDNSLSYIEEG-ATHVIVTS  162 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~-------~~~~~~i~~~v~-~~~~pl~vGGGIr-~e~~~~~l~~G-ad~VVigt  162 (316)
                      ++.+++++.+.++|++.+++..-.-.       +.-...+.+.++ .+++|+++-|+|+ .++++++++.| ||.|.+|-
T Consensus       228 ~~~~~~~~~l~~~g~d~~~~s~g~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR  307 (337)
T d1z41a1         228 ADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQADMATGAVGMITDGSMAEEILQNGRADLIFIGR  307 (337)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCSHHHHHHHHHTTSCSEEEECH
T ss_pred             hhhHHHHHHHHHcCCcccccccccccccccccCCcccHHHHHHHHHhcCceEEEeCCcCCHHHHHHHHHCCCcceehhhH
Confidence            45778999999999876555433211       112333444454 5789999999998 59999999999 99999999


Q ss_pred             eeecCCCCCHHHHHHHHHHhc
Q 021156          163 YVFNNGQMDLERLKDLVRVVG  183 (316)
Q Consensus       163 ~~~~~~~~~~eli~ei~~~~G  183 (316)
                      .++.|    |++.+++.+..+
T Consensus       308 ~~iad----Pd~~~k~~~~~~  324 (337)
T d1z41a1         308 ELLRD----PFFARTAAKQLN  324 (337)
T ss_dssp             HHHHC----TTHHHHHHHHTT
T ss_pred             HHHhC----chHHHHHHhhCC
Confidence            99998    999999987653

>d1yeya1 c.1.11.2 (A:184-435) RTS beta protein {Xanthomonas campestris pv. campestris [TaxId: 340]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: RTS beta protein
species: Xanthomonas campestris pv. campestris [TaxId: 340]

Probab=95.36  E-value=0.036  Score=47.23  Aligned_cols=139  Identities=14%  Similarity=0.132  Sum_probs=93.8

Q ss_pred             HHHHHHHHcCCCE--EEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH
Q 021156          145 DNSLSYIEEGATH--VIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF  222 (316)
Q Consensus       145 e~~~~~l~~Gad~--VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~  222 (316)
                      +.++++++.|...  +-+|.....+    .+.++++.+.+|+ .+-+.+|+.          .+|...   +..++++.+
T Consensus        21 ~~a~~~~~~Gf~~~KikvG~~~~~d----i~~v~~vr~~~g~-~~~l~vDaN----------~~~~~~---~A~~~~~~l   82 (252)
T d1yeya1          21 RLAKEAVADGFRTIKLKVGANVQDD----IRRCRLARAAIGP-DIAMAVDAN----------QRWDVG---PAIDWMRQL   82 (252)
T ss_dssp             HHHHHHHHTTCSEEEEECCSCHHHH----HHHHHHHHHHHCS-SSEEEEECT----------TCCCHH---HHHHHHHTT
T ss_pred             HHHHHHHHcCCCEEEEECCCCHHHH----HHHHHHHHHHhCC-CceEeeccc----------cCcchH---HHHHHHHhh
Confidence            5688888999874  5667655555    8999999999985 466899983          245421   355666777


Q ss_pred             HHcCCCEEEEeecCCccccCCCCHHHHHHHhh-cCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHH
Q 021156          223 LASYADEFLVHGVDVEGKKLGIDDELVALLGK-YSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYK  301 (316)
Q Consensus       223 ~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~-~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~  301 (316)
                      .+.++..+       +.=....|++.+.++.+ .+++|+.+.=.+.+..++.++.+.+ .++.+.+--+-  .+|-....
T Consensus        83 ~~~~~~~i-------EeP~~~~d~~~~~~~~~~~~~ipia~gE~~~~~~~~~~~i~~~-a~d~~~~d~~~--~GGit~~~  152 (252)
T d1yeya1          83 AEFDIAWI-------EEPTSPDDVLGHAAIRQGITPVPVSTGEHTQNRVVFKQLLQAG-AVDLIQIDAAR--VGGVNENL  152 (252)
T ss_dssp             GGGCCSCE-------ECCSCTTCHHHHHHHHHHSTTSCEECCTTCCSHHHHHHHHHHT-CCSEECCCTTT--SSHHHHHH
T ss_pred             hhcCceee-------cCCcchhhHHHHHHHhhccCCCceeccccccchhhhhhHhhcc-ccceecccccc--ccCchhhh
Confidence            66665533       11123347777777655 4689999999999999999999998 36666665554  44444455


Q ss_pred             HHHHHHHhhc
Q 021156          302 DVVAWHAQQE  311 (316)
Q Consensus       302 ~~~~~~~~~~  311 (316)
                      ++.+++++++
T Consensus       153 kia~~A~~~~  162 (252)
T d1yeya1         153 AILLLAAKFG  162 (252)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHcC
Confidence            5555555543

>d1wufa1 c.1.11.2 (A:1127-1370) N-acylamino acid racemase {Listeria innocua [TaxId: 1642]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: N-acylamino acid racemase
species: Listeria innocua [TaxId: 1642]

Probab=95.32  E-value=0.095  Score=44.14  Aligned_cols=146  Identities=13%  Similarity=0.119  Sum_probs=99.3

Q ss_pred             CcEEEecCCC--HH----HHHHHHHcCCCE--EEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeC
Q 021156          134 GGLQVGGGIN--SD----NSLSYIEEGATH--VIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTD  205 (316)
Q Consensus       134 ~pl~vGGGIr--~e----~~~~~l~~Gad~--VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~  205 (316)
                      +|+..-.|+.  .|    .++++++.|...  +=+|.  -.    +.+.++.+.+.+| + +-+.+|+.          .
T Consensus         5 i~~~~s~g~~~~~e~~~~~~~~~~~~Gf~~~Kikvg~--~~----D~~~v~~ir~~~~-~-~~l~vDaN----------~   66 (244)
T d1wufa1           5 IKVGVSIGLQQNVETLLQLVNQYVDQGYERVKLKIAP--NK----DIQFVEAVRKSFP-K-LSLMADAN----------S   66 (244)
T ss_dssp             EEBCEEECCCSCHHHHHHHHHHHHHHTCCEEEEECBT--TB----SHHHHHHHHTTCT-T-SEEEEECT----------T
T ss_pred             EEEeEEeCCCCCHHHHHHHHHHHHHCCCCEEEEEeCC--cH----HHHHHHHHHHhcc-c-hhhhhhhh----------c
Confidence            5666667773  23    377788899885  44443  23    4899999998886 3 56778873          3


Q ss_pred             CcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEE
Q 021156          206 RWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDV  285 (316)
Q Consensus       206 gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gV  285 (316)
                      +|...   +.. .++++.+.+...+= -.+      ..-|++.++++++.+++|+.+.-.+.+..++.++.+.+ .++.+
T Consensus        67 ~~~~~---~a~-~~~~l~~~~~~wiE-eP~------~~~d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~-a~d~v  134 (244)
T d1wufa1          67 AYNRE---DFL-LLKELDQYDLEMIE-QPF------GTKDFVDHAWLQKQLKTRICLDENIRSVKDVEQAHSIG-SCRAI  134 (244)
T ss_dssp             CCCGG---GHH-HHHTTGGGTCSEEE-CCS------CSSCSHHHHHHHTTCSSEEEECTTCCSHHHHHHHHHHT-CCSEE
T ss_pred             cccch---hhh-hhhcccccchhhhc-Ccc------cccchhhhhccccccccccccCccccchhhhhhhcccc-cccee
Confidence            56432   233 44666666665330 112      22378889999999999999999999999999999998 36777


Q ss_pred             EEccchhhccCcccHHHHHHHHHhhc
Q 021156          286 TVGSALDIFGGNLAYKDVVAWHAQQE  311 (316)
Q Consensus       286 ivG~Al~~~~g~~~~~~~~~~~~~~~  311 (316)
                      .+--..  .+|-....++.+++.++.
T Consensus       135 ~~d~~~--~GGit~~~ki~~~a~~~g  158 (244)
T d1wufa1         135 NLKLAR--VGGMSSALKIAEYCALNE  158 (244)
T ss_dssp             EECTGG--GTSHHHHHHHHHHHHHTT
T ss_pred             eccccc--ccchhhHHHHHHHHHHcC
Confidence            776666  666555666666666544

>d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class II FBP aldolase
domain: Tagatose-1,6-bisphosphate aldolase
species: Escherichia coli [TaxId: 562]

Probab=95.28  E-value=0.18  Score=44.00  Aligned_cols=155  Identities=14%  Similarity=0.079  Sum_probs=96.0

Q ss_pred             CCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcce--
Q 021156          132 YPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQK--  209 (316)
Q Consensus       132 ~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~--  209 (316)
                      +++-+..+=|-..+.+++.+++|.+.|.++...+.- +=|.+..+++++...+..+.+-.-+=...|. .- ...+.+  
T Consensus        74 vpV~lHlDH~~~~e~i~~ai~~GftSVMiD~S~lp~-eeNi~~t~~vv~~ah~~gv~VE~ElG~v~g~-ed-~~~~~~~~  150 (284)
T d1gvfa_          74 MPLALHLDHHESLDDIRRKVHAGVRSAMIDGSHFPF-AENVKLVKSVVDFCHSQDCSVEAELGRLGGV-ED-DMSVDAES  150 (284)
T ss_dssp             SCBEEEEEEECCHHHHHHHHHTTCCEEEECCTTSCH-HHHHHHHHHHHHHHHHTTCEEEEEESCCC-------------C
T ss_pred             CeEEeeeccccchHHHHHHHhcCCCeEEEECCCCCH-HHHHHHHHHHHHHHHhhccceeeeeeeeccc-cc-cccccccc
Confidence            444456666667899999999999999997765532 0024455555544311112222221000110 00 000111  


Q ss_pred             ecccCHHHHHHHHHHcCCCEEEEeecCCccccCC---CCHHHHHHHhhcCCCcEEEEeCCCCHH-HHHHHHHhCCCcCEE
Q 021156          210 FSDVYLDERVLDFLASYADEFLVHGVDVEGKKLG---IDDELVALLGKYSPIPVTYAGGVTTMA-DLEKIKVAGIGRVDV  285 (316)
Q Consensus       210 ~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G---~d~eli~~l~~~~~iPVIasGGI~s~e-Di~~l~~~G~g~~gV  285 (316)
                      ..--++.+..+...+.|++.+-+.-=+.-|.+.+   .|++.++++.+.+++|+..-||-+.++ ++.++.+.|  +..+
T Consensus       151 ~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~l~~~~L~~i~~~~~vPLVlHGgSG~~~e~i~~ai~~G--i~Ki  228 (284)
T d1gvfa_         151 AFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELG--VTKV  228 (284)
T ss_dssp             CSSCCHHHHHHHHHHHCCSEEEECSSCCSSCCSSCCCCCHHHHHHHHHHCCSCEEECCCTTCCHHHHHHHHHTT--EEEE
T ss_pred             cccCCHHHHHHHHHHhCCCEEeeecCceeeccCCCCccccchhhhhhccccCCeEeeCCCCCCHHHHHHHHHcC--eEEE
Confidence            1112677888888899999875433345555544   389999999999999999999877655 567777877  9999


Q ss_pred             EEccch
Q 021156          286 TVGSAL  291 (316)
Q Consensus       286 ivG~Al  291 (316)
                      =|++.+
T Consensus       229 Ni~T~l  234 (284)
T d1gvfa_         229 NVATEL  234 (284)
T ss_dssp             EECHHH
T ss_pred             EechHH
Confidence            999877

>d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 2,4-dienoyl-CoA reductase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.89  E-value=0.028  Score=50.31  Aligned_cols=83  Identities=16%  Similarity=0.041  Sum_probs=63.3

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCC-----------cccHHHHHHHHH-hCCCcEEEecCCC-HHHHHHHHHcC-CCEEE
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGAD-----------PLSKAAAIEALH-AYPGGLQVGGGIN-SDNSLSYIEEG-ATHVI  159 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~-----------~~~~~~i~~~v~-~~~~pl~vGGGIr-~e~~~~~l~~G-ad~VV  159 (316)
                      +-.++++.+.+.|.+.+++.--.-.           ........+.++ .+.+|+++.|||+ .++++++++.| ||.|-
T Consensus       229 ~~~~~~~~l~~~g~d~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~D~V~  308 (330)
T d1ps9a1         229 ETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHVSLPLVTTNRINDPQVADDILSRGDADMVS  308 (330)
T ss_dssp             HHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTTTTHHHHHHHTTSCSSCEEECSSCCSHHHHHHHHHTTSCSEEE
T ss_pred             HHHHHHHHHHHhhhhhhhcccccccccccccCCCCcchhHHHHHHHHHhhCCceEEEeCCCCCHHHHHHHHHCCCcchhH
Confidence            4667888998899887765432110           012334445555 4789999999998 59999999998 99999


Q ss_pred             eCCeeecCCCCCHHHHHHHHH
Q 021156          160 VTSYVFNNGQMDLERLKDLVR  180 (316)
Q Consensus       160 igt~~~~~~~~~~eli~ei~~  180 (316)
                      +|-.++.|    |++++++.+
T Consensus       309 ~gR~~iad----P~~~~k~~~  325 (330)
T d1ps9a1         309 MARPFLAD----AELLSKAQS  325 (330)
T ss_dssp             ESTHHHHC----TTHHHHHHT
T ss_pred             hhHHHHhC----hhHHHHHHc
Confidence            99999998    999988865

>d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Lactococcus lactis, isozyme A [TaxId: 1358]

Probab=94.88  E-value=0.012  Score=51.86  Aligned_cols=47  Identities=15%  Similarity=0.276  Sum_probs=39.9

Q ss_pred             CCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHh
Q 021156          133 PGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVV  182 (316)
Q Consensus       133 ~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~  182 (316)
                      ++||+..|||++ +|+.+++.+||+.|-++|++..+|   |+.++++.+..
T Consensus       242 ~~~Iig~GGI~s~~Da~~~i~aGA~~Vql~tal~~~G---p~~i~~i~~~L  289 (311)
T d1juba_         242 EIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHKEG---PAIFDRIIKEL  289 (311)
T ss_dssp             TSEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHC---THHHHHHHHHH
T ss_pred             CeeEEecCCcCCHHHHHHHHHcCCCceeeeHhhHhcC---hHHHHHHHHHH
Confidence            489999999995 999999999999999999987553   77777776554

>d1oyaa_ c.1.4.1 (A:) Old yellow enzyme (OYE) {Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Old yellow enzyme (OYE)
species: Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]

Probab=94.87  E-value=0.037  Score=50.75  Aligned_cols=51  Identities=14%  Similarity=0.103  Sum_probs=40.5

Q ss_pred             HHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHH
Q 021156          251 LLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVV  304 (316)
Q Consensus       251 ~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~  304 (316)
                      .+++.+++|||+.||+.+.+++.+....+ ++|-|-+||++  ..+|-..+.+.
T Consensus       311 ~ik~~~~~PVi~~G~i~~~~~~~~~i~~~-~aDlV~~gR~l--iaDP~l~~K~~  361 (399)
T d1oyaa_         311 FVYSIWKGPVIRAGNFALHPEVVREEVKD-KRTLIGYGRFF--ISNPDLVDRLE  361 (399)
T ss_dssp             HHHHHCCSCEEEESSCTTCHHHHHHHTTS-TTEEEECCHHH--HHCTTHHHHHH
T ss_pred             HHHHHhCCCEEEECCCCChHHHHHHHHcC-CCeEhHHHHHH--HHCccHHHHHH
Confidence            45567889999999999888877777666 49999999999  88885555543

>d2gl5a1 c.1.11.2 (A:123-400) Putative dehydratase protein STM2273 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: Putative dehydratase protein STM2273
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.86  E-value=0.053  Score=47.05  Aligned_cols=116  Identities=8%  Similarity=0.005  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHH
Q 021156          172 LERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVAL  251 (316)
Q Consensus       172 ~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~  251 (316)
                      .+.++.+.+.+|+ .+-+.+|+.          .+|...   +.+.+++.+.+.++..+  =+     -...-|++.+++
T Consensus        81 i~~v~aiRe~vG~-~~~l~vDan----------~~~~~~---~Ai~~~~~L~~~~l~wi--Ee-----Pi~~~d~~~~~~  139 (278)
T d2gl5a1          81 EARIAAMREAMGD-DADIIVEIH----------SLLGTN---SAIQFAKAIEKYRIFLY--EE-----PIHPLNSDNMQK  139 (278)
T ss_dssp             HHHHHHHHHHHCS-SSEEEEECT----------TCSCHH---HHHHHHHHHGGGCEEEE--EC-----SSCSSCHHHHHH
T ss_pred             HHHHHHHHHHhcc-ccceeeccc----------ccccch---hhHHHHHHhccccccee--cc-----cccccchhhhhh
Confidence            5778888899985 567889973          245422   35678888888765532  11     112238899999


Q ss_pred             HhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHHhhc
Q 021156          252 LGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHAQQE  311 (316)
Q Consensus       252 l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~~~~  311 (316)
                      |++.+++||.++-.+.+.+++.++++.+ .++.+.+--..  .+|-....++.+++.++.
T Consensus       140 L~~~~~ipIa~gE~~~~~~~~~~~i~~~-a~di~~~d~~~--~GGit~~~kia~la~~~g  196 (278)
T d2gl5a1         140 VSRSTTIPIATGERSYTRWGYRELLEKQ-SIAVAQPDLCL--CGGITEGKKICDYANIYD  196 (278)
T ss_dssp             HHHHCSSCEEECTTCCTTHHHHHHHHTT-CCSEECCCTTT--TTHHHHHHHHHHHHHTTT
T ss_pred             hccccccceecccccCChHHHhhhhccc-cceeEeecccc--ccchhhHHHhhhhhhhhc
Confidence            9999999998888899999999999998 36666666555  556555666666666654

>d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Thermus thermophilus [TaxId: 274]

Probab=94.84  E-value=0.12  Score=43.15  Aligned_cols=123  Identities=18%  Similarity=0.148  Sum_probs=74.1

Q ss_pred             HHHHHHHHcCCCE--EEeCCeeecCCCC--CHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHH
Q 021156          145 DNSLSYIEEGATH--VIVTSYVFNNGQM--DLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVL  220 (316)
Q Consensus       145 e~~~~~l~~Gad~--VVigt~~~~~~~~--~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~  220 (316)
                      .+++.+++.||+-  +|++-..+.+|..  -.+.+.++++..+ +.+     +|     ..+-+.-+.   +-.....++
T Consensus        74 ~e~~~ai~~GA~EiD~V~n~~~~~~g~~~~v~~ei~~v~~~~~-~~~-----lK-----VIlEt~~L~---~~ei~~a~~  139 (211)
T d1ub3a_          74 LEAALACARGADEVDMVLHLGRAKAGDLDYLEAEVRAVREAVP-QAV-----LK-----VILETGYFS---PEEIARLAE  139 (211)
T ss_dssp             HHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHST-TSE-----EE-----EECCGGGSC---HHHHHHHHH
T ss_pred             HHHHHHHHcCCCeEEEeeccchhhcCCHHHHHHHHHHHHHhcc-CCc-----eE-----EEeccccCC---HHHHHHHHH
Confidence            5688899999996  5676666655432  1233445555453 222     11     011111121   123556678


Q ss_pred             HHHHcCCCEEEEeecCCcccc-CCCCHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEcc
Q 021156          221 DFLASYADEFLVHGVDVEGKK-LGIDDELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGS  289 (316)
Q Consensus       221 ~~~~~Ga~~ilvtdi~~dG~~-~G~d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~  289 (316)
                      .+.+.|++.+= |+   .|.. .|...+-++.+++..  .+.|=++|||+|.+++.+++++|  ++.  +|+
T Consensus       140 ~a~~aGadfiK-TS---TG~~~~gat~e~v~~m~~~~~~~~~iKasGGIrt~~~a~~~l~aG--a~r--iGt  203 (211)
T d1ub3a_         140 AAIRGGADFLK-TS---TGFGPRGASLEDVALLVRVAQGRAQVKAAGGIRDRETALRMLKAG--ASR--LGT  203 (211)
T ss_dssp             HHHHHTCSEEE-CC---CSSSSCCCCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTT--CSE--EEE
T ss_pred             HHHHhccceEE-ec---CCCCCCCCCHHHHHHHHHHhCCCceEECcCCCCCHHHHHHHHHHh--hhH--hcc
Confidence            88899999653 33   3443 345666555555432  47788999999999999999998  653  454

>d1qapa1 c.1.17.1 (A:130-296) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.80  E-value=0.062  Score=43.44  Aligned_cols=67  Identities=18%  Similarity=0.211  Sum_probs=51.0

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHhC--CCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeec
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHAY--PGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~~--~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      +.. .++...++|++   ++-||.-  ..+.+.++++..  .+.+.+.|||+.+.+..|...|+|.+.+|+..+.
T Consensus        88 ~~~-~~~~a~~~g~d---iImLDN~--~pe~~~~av~~i~~~~~lEaSGgI~~~ni~~ya~~GVD~IS~galt~~  156 (167)
T d1qapa1          88 NLD-ELDDALKAGAD---IIMLDNF--NTDQMREAVKRVNGQARLEVSGNVTAETLREFAETGVDFISVGALTKH  156 (167)
T ss_dssp             SHH-HHHHHHHTTCS---EEEESSC--CHHHHHHHHHTTCTTCCEEECCCSCHHHHHHHHHTTCSEEECSHHHHE
T ss_pred             cHH-HHHHHHhcCCc---EEEecCC--CHHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHcCCCEEECCcccCC
Confidence            444 45556667776   7888753  345666777643  4789999999999999999999999999987543

>d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class II FBP aldolase
domain: Fructose-bisphosphate aldolase (FBP aldolase)
species: Thermus aquaticus [TaxId: 271]

Probab=94.80  E-value=0.27  Score=43.22  Aligned_cols=158  Identities=15%  Similarity=0.163  Sum_probs=97.1

Q ss_pred             HhCCCc--EEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCe-eEEEeCC
Q 021156          130 HAYPGG--LQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGK-YAIVTDR  206 (316)
Q Consensus       130 ~~~~~p--l~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~-~~v~~~g  206 (316)
                      +...+|  +-.+=|-..+.+++.+++|.+.|.++...+.- +=|.+..+++++...+-.+.+-.-+=...|. .-+....
T Consensus        69 ~~~~vpv~lHlDH~~~~e~i~~ai~~GftSVMiDgS~l~~-eeNi~~Tk~vv~~Ah~~gv~VEaElG~igg~Ed~~~~~~  147 (305)
T d1rvga_          69 KEARVPVAVHLDHGSSYESVLRALRAGFTSVMIDKSHEDF-ETNVRETRRVVEAAHAVGVTVEAELGRLAGIEEHVAVDE  147 (305)
T ss_dssp             HHCSSCEEEEEEEECSHHHHHHHHHTTCSEEEECCTTSCH-HHHHHHHHHHHHHHHHTTCEEEEEESCCCCSCC------
T ss_pred             hccCCcEEEeehhccChhhhHHHHhcCCceEEEcCccccH-HHHHHHHHHHHHHhchhceeEEeeeeeeecccccccccc
Confidence            344555  45666666799999999999999997655421 0025555565554322222222222000110 0000000


Q ss_pred             cceecccCHHHHHHHHHHcCCCEEEEeecCCccccCC-----CCHHHHHHHhhcCCCcEEEEeCC---------------
Q 021156          207 WQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLG-----IDDELVALLGKYSPIPVTYAGGV---------------  266 (316)
Q Consensus       207 w~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G-----~d~eli~~l~~~~~iPVIasGGI---------------  266 (316)
                      .. ..--++.+..+...+.|++.+-+--=+.-|.+.+     .|+++++++.+.+++|+..-||=               
T Consensus       148 ~~-~~~T~peea~~Fv~~TgvD~LAvaiGn~HG~Yk~~~~~~l~~~~l~~I~~~~~~PLVlHGgS~vp~~~~~~~~~~g~  226 (305)
T d1rvga_         148 KD-ALLTNPEEARIFMERTGADYLAVAIGTSHGAYKGKGRPFIDHARLERIARLVPAPLVLHGASAVPPELVERFRASGG  226 (305)
T ss_dssp             CC-TTCCCHHHHHHHHHHHCCSEEEECSSCCSSSBCSSSSCCCCHHHHHHHHHHCCSCEEECSCCCCCHHHHHHHHHTTC
T ss_pred             cc-cccCCHHHHHHHHHHhCccHhhhhhhhhhcccCCCCcccchHHHHHHHHhccCCCeeccCCccccHHHHhhhcccCc
Confidence            00 0012577766677788999875433344565543     58999999999999999998864               


Q ss_pred             -------CCHHHHHHHHHhCCCcCEEEEccch
Q 021156          267 -------TTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       267 -------~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                             .+.+++.++.+.|  +..+=|++.+
T Consensus       227 ~lhg~sG~~~e~i~~ai~~G--V~KiNi~T~l  256 (305)
T d1rvga_         227 EIGEAAGIHPEDIKKAISLG--IAKINTDTDL  256 (305)
T ss_dssp             CCCSCBCCCHHHHHHHHHTT--EEEEEECHHH
T ss_pred             ccCCCCCCCHHHHHHHHHcC--eEEEEeChHH
Confidence                   3478899999998  8888899876

>d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Thermus thermophilus [TaxId: 274]

Probab=94.75  E-value=0.021  Score=49.96  Aligned_cols=72  Identities=13%  Similarity=0.006  Sum_probs=48.6

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCCc-------ccHHHHHHHHH-hCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCe
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGADP-------LSKAAAIEALH-AYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSY  163 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~~-------~~~~~i~~~v~-~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~  163 (316)
                      ..|.+..+...+..-..+|++-+.+..       ......++.++ ..++|+.||=||+ .++++.+  .+||-|||||+
T Consensus       154 tT~~eRi~~i~~~s~GFIY~Vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pv~vGFGIs~~e~v~~~--~~ADGvIVGSA  231 (271)
T d1ujpa_         154 TSTDARIATVVRHATGFVYAVSVTGVTGMRERLPEEVKDLVRRIKARTALPVAVGFGVSGKATAAQA--AVADGVVVGSA  231 (271)
T ss_dssp             TCCHHHHHHHHTTCCSCEEEECC------------CCHHHHHHHHTTCCSCEEEESCCCSHHHHHHH--TTSSEEEECHH
T ss_pred             CcchHHHHHHHHhCcchhhhhcccCccCccccchHHHHHHHHhhhccccCCeEEeCCCCCHHHHHHh--CCCCEEEEcHH
Confidence            345567777777655566766666531       12334455555 3689999999998 4888875  59999999999


Q ss_pred             eec
Q 021156          164 VFN  166 (316)
Q Consensus       164 ~~~  166 (316)
                      +.+
T Consensus       232 iV~  234 (271)
T d1ujpa_         232 LVR  234 (271)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            875

>d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.74  E-value=0.029  Score=50.66  Aligned_cols=85  Identities=18%  Similarity=0.175  Sum_probs=61.1

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCC------------------cc---cHHHHHHHHH-h--CCCcEEEecCCC-HHHHH
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGAD------------------PL---SKAAAIEALH-A--YPGGLQVGGGIN-SDNSL  148 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~------------------~~---~~~~i~~~v~-~--~~~pl~vGGGIr-~e~~~  148 (316)
                      +..++++...++|++++.+++-.-.                  ..   ......+.++ .  .++||+..|||. .+|+.
T Consensus       235 ~i~~~a~~~~~~g~~gi~~~nt~~~~~~~~~~~~~~~~gg~sG~~~~~i~l~~v~~v~~~~~~~ipIig~GGI~s~~Da~  314 (367)
T d1d3ga_         235 DKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDAL  314 (367)
T ss_dssp             HHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHH
T ss_pred             hhhhhHHHHHhhhhheeecccccccccccccccccccccccccccchhhhHHHHHHHHHHhCCCccEEEECCCCCHHHHH
Confidence            4556788888889998888654310                  01   1222233332 2  369999999998 59999


Q ss_pred             HHHHcCCCEEEeCCee-ecCCCCCHHHHHHHHHHh
Q 021156          149 SYIEEGATHVIVTSYV-FNNGQMDLERLKDLVRVV  182 (316)
Q Consensus       149 ~~l~~Gad~VVigt~~-~~~~~~~~eli~ei~~~~  182 (316)
                      +++.+||+-|-++|++ +++    |..+.++.+..
T Consensus       315 e~i~aGAs~VQi~Ta~~~~G----p~ii~~I~~~L  345 (367)
T d1d3ga_         315 EKIRAGASLVQLYTALTFWG----PPVVGKVKREL  345 (367)
T ss_dssp             HHHHHTCSEEEESHHHHHHC----THHHHHHHHHH
T ss_pred             HHHHcCCCHHHhhHHHHhcC----cHHHHHHHHHH
Confidence            9999999999999996 565    88888887654

>d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.62  E-value=0.15  Score=42.94  Aligned_cols=125  Identities=20%  Similarity=0.290  Sum_probs=75.3

Q ss_pred             HHHHHHHHcCCCE--EEeCCeeecCCCCC--HHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHH
Q 021156          145 DNSLSYIEEGATH--VIVTSYVFNNGQMD--LERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVL  220 (316)
Q Consensus       145 e~~~~~l~~Gad~--VVigt~~~~~~~~~--~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~  220 (316)
                      .+++.+++.||+-  +|++-..+.+|+.+  .+.+.++.+..+ ..+     +|      .+.-.+...  +-.....++
T Consensus        74 ~E~~~Ai~~GAdEID~Vin~~~l~~g~~~~v~~ei~~v~~~~~-~~~-----lK------VIlEt~~L~--~~ei~~a~~  139 (225)
T d1mzha_          74 KEAVEAVRDGAQELDIVWNLSAFKSEKYDFVVEELKEIFRETP-SAV-----HK------VIVETPYLN--EEEIKKAVE  139 (225)
T ss_dssp             HHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHTCT-TSE-----EE------EECCGGGCC--HHHHHHHHH
T ss_pred             HHHHHHHHcCCCeEEEeechhhhhcccHHHHHHHHHHHHHhcc-Cce-----ee------hhhhhccCC--HHHHHHHHH
Confidence            6688999999996  56665555554321  122334444442 222     12      111111111  123566788


Q ss_pred             HHHHcCCCEEEEeecCCcccc-CCCCHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          221 DFLASYADEFLVHGVDVEGKK-LGIDDELVALLGKYS--PIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       221 ~~~~~Ga~~ilvtdi~~dG~~-~G~d~eli~~l~~~~--~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      .+.+.|++.+= |   ..|.. .|...+.++.+++..  .+.|=++|||++.+++.+++++|  ++.  +|++-
T Consensus       140 ~a~~aGadfiK-T---STG~~~~gat~e~v~~m~~~~~~~~~iKasGGIrt~~~a~~~i~~G--a~R--iGtSs  205 (225)
T d1mzha_         140 ICIEAGADFIK-T---STGFAPRGTTLEEVRLIKSSAKGRIKVKASGGIRDLETAISMIEAG--ADR--IGTSS  205 (225)
T ss_dssp             HHHHHTCSEEE-C---CCSCSSSCCCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTT--CSE--EEESC
T ss_pred             HHHHcccceEe-e---cCCCCCCCCCHHHHHHHHHHhCCCceEECcCCCCCHHHHHHHHHhc--hhh--eecCc
Confidence            88899999763 3   33433 344566565555433  58899999999999999999998  764  55544

>d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: CutC-like
family: CutC-like
domain: Copper homeostasis protein CutC
species: Shigella flexneri [TaxId: 623]

Probab=94.61  E-value=0.17  Score=43.25  Aligned_cols=145  Identities=14%  Similarity=0.151  Sum_probs=93.2

Q ss_pred             HHHHHHHHHcCCCEEEeCCeeecCC-CCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceeccc-CHHHHHHH
Q 021156          144 SDNSLSYIEEGATHVIVTSYVFNNG-QMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDV-YLDERVLD  221 (316)
Q Consensus       144 ~e~~~~~l~~Gad~VVigt~~~~~~-~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~-~~~e~a~~  221 (316)
                      .+++..+.+.||||+=+-+.....| ..++.+++.+.+... =.|.+.|=-|  .|. .++.     ..++ ...+.++.
T Consensus        10 ~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~-iPv~vMIRPR--~Gd-F~Ys-----~~E~~~M~~di~~   80 (247)
T d1twda_          10 MECALTAQQNGADRVELCAAPKEGGLTPSLGVLKSVRQRVT-IPVHPIIRPR--GGD-FCYS-----DGEFAAILEDVRT   80 (247)
T ss_dssp             HHHHHHHHHTTCSEEEECBCGGGTCBCCCHHHHHHHHHHCC-SCEEEBCCSS--SSC-SCCC-----HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCEEEEcCCcccCCCCCCHHHHHHHHHhcC-CCeEEEEecC--CCC-CCCC-----HHHHHHHHHHHHH
Confidence            5889999999999998876665555 235788888887662 3344444332  331 1111     1111 24566888


Q ss_pred             HHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcC-CCc---------------------------EEEEeCCCC----H
Q 021156          222 FLASYADEFLVHGVDVEGKKLGIDDELVALLGKYS-PIP---------------------------VTYAGGVTT----M  269 (316)
Q Consensus       222 ~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~-~iP---------------------------VIasGGI~s----~  269 (316)
                      +.+.|++.|++--.+.||+   .|.+.++++.+.. +.|                           |..|||-.+    .
T Consensus        81 ~k~~G~dGvV~G~L~~dg~---iD~~~~~~L~~~a~~l~vTFHRAfD~~~d~~~al~~Li~lG~~rILTSGg~~~a~~G~  157 (247)
T d1twda_          81 VRELGFPGLVTGVLDVDGN---VDMPRMEKIMAAAGPLAVTFHRAFDMCANPLYTLNNLAELGIARVLTSGQKSDALQGL  157 (247)
T ss_dssp             HHHTTCSEEEECCBCTTSS---BCHHHHHHHHHHHTTSEEEECGGGGGCSCHHHHHHHHHHHTCCEEEECTTSSSTTTTH
T ss_pred             HHHcCCCeEEEEEECCCCC---ccHHHHHHHHHHhcccCeeeehhhhhhCCHHHHHHHHHhcCCCeEeccCCCCchhHHH
Confidence            9999999999888888865   6888888776532 444                           456888776    4


Q ss_pred             HHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156          270 ADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVA  305 (316)
Q Consensus       270 eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~  305 (316)
                      +.+.++.+...+.. +|.|..+    +.-+++++++
T Consensus       158 ~~L~~L~~~a~~~i-Im~GgGI----~~~Ni~~l~~  188 (247)
T d1twda_         158 SKIMELIAHRDAPI-IMAGAGV----RAENLHHFLD  188 (247)
T ss_dssp             HHHHHHHTSSSCCE-EEEESSC----CTTTHHHHHH
T ss_pred             HHHHHHHHhcCCcE-EEecCCC----CHHHHHHHHH
Confidence            55666665432333 7778887    3335556554

>d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=94.50  E-value=0.035  Score=49.74  Aligned_cols=70  Identities=21%  Similarity=0.245  Sum_probs=52.7

Q ss_pred             HHHHHHHHcCCCcceEEEecCC------------cccHHHHHHHH---HhCCCcEEEecCCC-HHHHHHHHHcCCCEEEe
Q 021156           97 EFANLYKEDGLTGGHAIMLGAD------------PLSKAAAIEAL---HAYPGGLQVGGGIN-SDNSLSYIEEGATHVIV  160 (316)
Q Consensus        97 e~a~~~~~~G~~~l~lvDLda~------------~~~~~~i~~~v---~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVi  160 (316)
                      +.|+.+.++|++.+.+ -...+            .+....+.++.   +..++|++.+|||+ ..|+-++|.+|||.|.+
T Consensus       151 ~~a~~l~~~GaD~v~V-Gig~Gs~ctt~~~~G~g~p~~sai~~~~~~~~~~~vpvIAdGGi~~~gdiakAla~GAd~Vm~  229 (330)
T d1vrda1         151 EGTEALIKAGADAVKV-GVGPGSICTTRVVAGVGVPQLTAVMECSEVARKYDVPIIADGGIRYSGDIVKALAAGAESVMV  229 (330)
T ss_dssp             HHHHHHHHTTCSEEEE-CSSCSTTCHHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred             HHHHHHHHcCCCEEee-ccccCccccccceeccccccchhHHHHHHHHHhcCceEEecCCcccCCchheeeeccCceeee
Confidence            4788888999998765 44322            12233444442   35789999999999 69999999999999999


Q ss_pred             CCeeecC
Q 021156          161 TSYVFNN  167 (316)
Q Consensus       161 gt~~~~~  167 (316)
                      ||.+-..
T Consensus       230 Gs~fa~~  236 (330)
T d1vrda1         230 GSIFAGT  236 (330)
T ss_dssp             SHHHHTB
T ss_pred             cchheee
Confidence            9987654

>d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Cobalamin (vitamin B12)-binding domain
family: Cobalamin (vitamin B12)-binding domain
domain: Glutamate mutase, small subunit
species: Clostridium cochlearium [TaxId: 1494]

Probab=94.40  E-value=0.33  Score=37.45  Aligned_cols=122  Identities=11%  Similarity=0.028  Sum_probs=72.7

Q ss_pred             EEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecC
Q 021156          157 HVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVD  236 (316)
Q Consensus       157 ~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~  236 (316)
                      +|+++|..-+-=.+...++..+.+..|=+-+.+..|                    ..+.++++.+.+.+++.+.+-...
T Consensus         5 kVvi~~~~gD~H~lG~~mva~~l~~~G~~V~~LG~~--------------------~p~e~iv~a~~~~~~d~v~lS~~~   64 (137)
T d1ccwa_           5 TIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVL--------------------SPQELFIKAAIETKADAILVSSLY   64 (137)
T ss_dssp             EEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEE--------------------ECHHHHHHHHHHHTCSEEEEEECS
T ss_pred             EEEEEecCCChhHHHHHHHHHHHHHCCCeEEecccc--------------------cCHHHHHHHHHhcCCCEEEEeecc
Confidence            566665432211223567777777776333333333                    257789999999999987653332


Q ss_pred             CccccCCCCH-HHHHHHhhc--CCCcEEEEeCCCC-----HHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHHHH
Q 021156          237 VEGKKLGIDD-ELVALLGKY--SPIPVTYAGGVTT-----MADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAWHA  308 (316)
Q Consensus       237 ~dG~~~G~d~-eli~~l~~~--~~iPVIasGGI~s-----~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~~~  308 (316)
                      .. ..  +.. ++++.+++.  .++||+++|.+.+     .++..++.++|  ++      ++  |...-+++++.+|++
T Consensus        65 ~~-~~--~~~~~~~~~l~~~~~~~i~iivGG~~~~~~~~~~~~~~~l~~~G--v~------~i--f~~~t~~~~~~~~l~  131 (137)
T d1ccwa_          65 GQ-GE--IDCKGLRQKCDEAGLEGILLYVGGNIVVGKQHWPDVEKRFKDMG--YD------RV--YAPGTPPEVGIADLK  131 (137)
T ss_dssp             ST-HH--HHHTTHHHHHHHTTCTTCEEEEEESCSSSSCCHHHHHHHHHHTT--CS------EE--CCTTCCHHHHHHHHH
T ss_pred             cc-ch--HHHHHHHHHHHHhccCCCEEEEeCCcCCCccccHHHHHHHHHcC--CC------EE--ECCCCCHHHHHHHHH
Confidence            21 11  111 244455433  4799999998865     44556666777  53      34  655567889999988


Q ss_pred             hhc
Q 021156          309 QQE  311 (316)
Q Consensus       309 ~~~  311 (316)
                      +..
T Consensus       132 ~~l  134 (137)
T d1ccwa_         132 KDL  134 (137)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            753

>d1to3a_ c.1.10.1 (A:) Putative aldolase YihT {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Putative aldolase YihT
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.38  E-value=0.067  Score=46.82  Aligned_cols=77  Identities=17%  Similarity=0.154  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHcCCCEEEEeecCCccccCCCCHH---HHHHHhhcCCCc-EEEEeCCCCHHHHHHHHHhC--CCcCEEEEc
Q 021156          215 LDERVLDFLASYADEFLVHGVDVEGKKLGIDDE---LVALLGKYSPIP-VTYAGGVTTMADLEKIKVAG--IGRVDVTVG  288 (316)
Q Consensus       215 ~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~e---li~~l~~~~~iP-VIasGGI~s~eDi~~l~~~G--~g~~gVivG  288 (316)
                      +...++.+.+.|++-+-+ ...  |...+..++   ..+++.+.+++| |+.|||. +.+++.+.++.-  .|+.|+++|
T Consensus       177 i~~a~r~~~e~GaDi~K~-~~p--~~~~~~~~~~~~~~~~~~~~~~~p~vvLs~G~-~~~~f~~~l~~A~~aGa~G~~~G  252 (291)
T d1to3a_         177 IIDAAKELGDSGADLYKV-EMP--LYGKGARSDLLTASQRLNGHINMPWVILSSGV-DEKLFPRAVRVAMEAGASGFLAG  252 (291)
T ss_dssp             HHHHHHHHTTSSCSEEEE-CCG--GGGCSCHHHHHHHHHHHHHTCCSCEEECCTTS-CTTTHHHHHHHHHHTTCCEEEES
T ss_pred             HHHHHHHHHhcCCcEEEE-ecC--CCchhhhHHHHHHHHHHhhcCCCcEEEEeCCC-CHHHHHHHHHHHHHCCCeEEEeC
Confidence            456688888999985432 222  222333343   455666677899 6777776 556776655421  249999999


Q ss_pred             cchhhccCc
Q 021156          289 SALDIFGGN  297 (316)
Q Consensus       289 ~Al~~~~g~  297 (316)
                      |++  +..+
T Consensus       253 R~i--w~~~  259 (291)
T d1to3a_         253 RAV--WSSV  259 (291)
T ss_dssp             HHH--HGGG
T ss_pred             hhh--hhCc
Confidence            999  6654

>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Thermus thermophilus [TaxId: 274]

Probab=94.31  E-value=0.021  Score=49.74  Aligned_cols=35  Identities=17%  Similarity=0.206  Sum_probs=31.8

Q ss_pred             CCCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeeec
Q 021156          132 YPGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus       132 ~~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      ..+||++.||||. .|+-+++.+||+-|-+|+.++.
T Consensus       233 ~~i~Ii~dGGIr~g~Dv~KALalGAdaV~iGr~~l~  268 (310)
T d1vcfa1         233 PHLPLVASGGVYTGTDGAKALALGADLLAVARPLLR  268 (310)
T ss_dssp             SSSCEEEESSCCSHHHHHHHHHHTCSEEEECGGGHH
T ss_pred             CCCeEEeCCCCCchHHHHHHHHhCCCEeeEhHHHHH
Confidence            4689999999995 9999999999999999998764

>d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Thermotoga maritima [TaxId: 2336]

Probab=94.30  E-value=0.19  Score=43.04  Aligned_cols=125  Identities=18%  Similarity=0.177  Sum_probs=75.4

Q ss_pred             HHHHHHHHcCCCE--EEeCCeeecCCCC--CHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHH
Q 021156          145 DNSLSYIEEGATH--VIVTSYVFNNGQM--DLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVL  220 (316)
Q Consensus       145 e~~~~~l~~Gad~--VVigt~~~~~~~~--~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~  220 (316)
                      .+++.+++.||+-  +|++-..+.+|..  -.+.+.++.+..+ ..+     +|     ..+-+.-+.+   ......++
T Consensus       107 ~Ea~~Ai~~GAdEID~Vin~~~l~~g~~~~v~~ei~~v~~~~~-~~~-----lK-----VIlEt~~L~~---~e~~~a~~  172 (251)
T d1o0ya_         107 HEAIFAVESGADEIDMVINVGMLKAKEWEYVYEDIRSVVESVK-GKV-----VK-----VIIETCYLDT---EEKIAACV  172 (251)
T ss_dssp             HHHHHHHHHTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTT-TSE-----EE-----EECCGGGCCH---HHHHHHHH
T ss_pred             HHHHHHHHcCCceEEEEeccchhhcCCHHHHHHHHHHHHHHhc-ccc-----ee-----eeecccccCc---HHHHHHHH
Confidence            5688899999995  6777766665432  1234444454443 221     11     0111111211   13556678


Q ss_pred             HHHHcCCCEEEEeecCCccccC-CCCHHHHHHHhhc--CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          221 DFLASYADEFLVHGVDVEGKKL-GIDDELVALLGKY--SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       221 ~~~~~Ga~~ilvtdi~~dG~~~-G~d~eli~~l~~~--~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      .+.+.|++.|= |   ..|... |...+-++.+++.  -.+.|=++|||++.+++.+++++|  ++.  ||++-
T Consensus       173 ia~~aGadfvK-T---STGf~~~gat~e~V~~m~~~~~~~~giKasGGIrt~~~a~~~i~aG--a~r--iGtSs  238 (251)
T d1o0ya_         173 ISKLAGAHFVK-T---STGFGTGGATAEDVHLMKWIVGDEMGVKASGGIRTFEDAVKMIMYG--ADR--IGTSS  238 (251)
T ss_dssp             HHHHTTCSEEE-C---CCSSSSCCCCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTT--CSE--EEESC
T ss_pred             HHHHhCcceee-c---cCCCCCCCcCHHHHHHHHHHhCCCceEeccCCcCCHHHHHHHHHHh--hHH--hCCCc
Confidence            88899999653 3   334433 3455555555442  246788999999999999999999  664  56544

>d2gdqa1 c.1.11.2 (A:119-374) Hypothetical protein YitF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: Hypothetical protein YitF
species: Bacillus subtilis [TaxId: 1423]

Probab=94.27  E-value=0.12  Score=43.98  Aligned_cols=138  Identities=10%  Similarity=0.033  Sum_probs=88.2

Q ss_pred             HHHHHHHcCCCE--EEeCC-eeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH
Q 021156          146 NSLSYIEEGATH--VIVTS-YVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF  222 (316)
Q Consensus       146 ~~~~~l~~Gad~--VVigt-~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~  222 (316)
                      +++.+++.|...  +=+|. ....|    .+.++.+.+.+|+ .+-+.+|+.          .+|.-.   +..++++.+
T Consensus        28 ~~~~~~~~Gf~~~Kikvg~~~~~~d----i~~v~avr~~~G~-~~~l~vDan----------~~~~~~---~A~~~~~~l   89 (256)
T d2gdqa1          28 NVEAQLKKGFEQIKVKIGGTSFKED----VRHINALQHTAGS-SITMILDAN----------QSYDAA---AAFKWERYF   89 (256)
T ss_dssp             HHHHHHTTTCCEEEEECSSSCHHHH----HHHHHHHHHHHCT-TSEEEEECT----------TCCCHH---HHHTTHHHH
T ss_pred             HHHHHHHCCCCEEEEECCCCCHHHH----HHHHHHHHHHcCC-CeEEeeccc----------cCCCHH---HHHHHHHHH
Confidence            466777788775  44453 23343    8899999999985 466789983          245321   244556666


Q ss_pred             HHc-CCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHH
Q 021156          223 LAS-YADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYK  301 (316)
Q Consensus       223 ~~~-Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~  301 (316)
                      .+. ++.  .+=.     -...-|++-++++++.+++||.++=.+.+.+++.++++.+ .++.+.+--..  .+|--...
T Consensus        90 ~~~~~i~--~~Ee-----P~~~~d~~~~~~l~~~~~ipIa~gE~~~~~~~~~~~i~~~-a~di~~~d~~~--~GGit~~~  159 (256)
T d2gdqa1          90 SEWTNIG--WLEE-----PLPFDQPQDYAMLRSRLSVPVAGGENMKGPAQYVPLLSQR-CLDIIQPDVMH--VNGIDEFR  159 (256)
T ss_dssp             TTCSCEE--EEEC-----CSCSSCHHHHHHHHTTCSSCEEECTTCCSHHHHHHHHHTT-CCSEECCCTTT--TTHHHHHH
T ss_pred             hhcCcee--Eecc-----ccccchHHHHHHHhhcccceeecCccccchhhHHHHHHhh-cceeeeccccc--cccHHHHH
Confidence            542 222  1111     1122388999999999999988777899999999999998 36656655444  44544455


Q ss_pred             HHHHHHHhhc
Q 021156          302 DVVAWHAQQE  311 (316)
Q Consensus       302 ~~~~~~~~~~  311 (316)
                      ++.+.+++..
T Consensus       160 ~i~~~a~~~~  169 (256)
T d2gdqa1         160 DCLQLARYFG  169 (256)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHhhhc
Confidence            5555555533

>d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=94.26  E-value=0.02  Score=51.24  Aligned_cols=84  Identities=20%  Similarity=0.155  Sum_probs=60.5

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCC------------------cccHHHHHHHH---H-hC--CCcEEEecCCCH-HHHH
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGAD------------------PLSKAAAIEAL---H-AY--PGGLQVGGGINS-DNSL  148 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~------------------~~~~~~i~~~v---~-~~--~~pl~vGGGIr~-e~~~  148 (316)
                      +..+++....+.|++++-.++-...                  ....+...+.+   + .+  .+||+-.|||.+ +|+.
T Consensus       226 ~i~~~a~~~~~~g~~gv~~int~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~v~~v~~~~~~~ipIIG~GGI~s~~Da~  305 (336)
T d1f76a_         226 ELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAR  305 (336)
T ss_dssp             HHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHHHTTSSCEEEESSCCSHHHHH
T ss_pred             hhhhhHHHHHhcCccchhhhhhhhcccccccccccccccccccchhHHHHHHHHHHHHHHcCCCCeEEEECCCCCHHHHH
Confidence            4456777777778888777664211                  11222223332   2 23  689999999985 9999


Q ss_pred             HHHHcCCCEEEeCCee-ecCCCCCHHHHHHHHHH
Q 021156          149 SYIEEGATHVIVTSYV-FNNGQMDLERLKDLVRV  181 (316)
Q Consensus       149 ~~l~~Gad~VVigt~~-~~~~~~~~eli~ei~~~  181 (316)
                      +.+.+||+-|=++|++ +++    |.+++++.++
T Consensus       306 e~i~aGAsaVQv~Tal~~~G----p~ii~~I~~e  335 (336)
T d1f76a_         306 EKIAAGASLVQIYSGFIFKG----PPLIKEIVTH  335 (336)
T ss_dssp             HHHHHTCSEEEESHHHHHHC----HHHHHHHHHH
T ss_pred             HHHHcCCcHHHHHHHHHhcC----hHHHHHHHhh
Confidence            9999999999999997 565    9999999874

>d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus woesei [TaxId: 2262]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Archaeon Pyrococcus woesei [TaxId: 2262]

Probab=94.14  E-value=0.037  Score=46.55  Aligned_cols=36  Identities=25%  Similarity=0.279  Sum_probs=32.5

Q ss_pred             CCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecC
Q 021156          132 YPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNN  167 (316)
Q Consensus       132 ~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~  167 (316)
                      -.+|+.+||||+ .+++..+...|+|-|.||++.++-
T Consensus       174 ~~v~vlygGsV~~~n~~~~~~~~g~dGvLVGsAsl~a  210 (224)
T d1hg3a_         174 PEVKVLCGAGISTGEDVKKAIELGTVGVLLASGVTKA  210 (224)
T ss_dssp             TTSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTC
T ss_pred             cccceEEeCCcCCHHHHHHHHhCCCCEEEEcceeecC
Confidence            368999999998 588999999999999999999874

>d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=94.06  E-value=0.041  Score=50.24  Aligned_cols=72  Identities=17%  Similarity=0.202  Sum_probs=52.3

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCc------------ccHHHHHHHH---HhCCCcEEEecCCC-HHHHHHHHHcCCCE
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADP------------LSKAAAIEAL---HAYPGGLQVGGGIN-SDNSLSYIEEGATH  157 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~------------~~~~~i~~~v---~~~~~pl~vGGGIr-~e~~~~~l~~Gad~  157 (316)
                      ++ +.|+.+.++|++.+.+ ....+.            +....+.++.   +..++|++.+|||+ ..|+-++|.+|||.
T Consensus       170 T~-e~a~~L~~aGAD~VkV-GiG~Gs~ctTr~~tGvG~pq~sai~~~~~~a~~~~vpIIADGGi~~~gdiakAla~GAd~  247 (378)
T d1jr1a1         170 TA-AQAKNLIDAGVDALRV-GMGCGSICITQEVLACGRPQATAVYKVSEYARRFGVPVIADGGIQNVGHIAKALALGAST  247 (378)
T ss_dssp             SH-HHHHHHHHHTCSEEEE-CSSCSTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSE
T ss_pred             cH-HHHHHHHHhCCCEEee-ccccccccccccccccCcccchhhhHHHHhhcccCCceecccccccCCceeeEEEeecce
Confidence            44 4788888999996643 443210            1233343333   34689999999999 69999999999999


Q ss_pred             EEeCCeeecC
Q 021156          158 VIVTSYVFNN  167 (316)
Q Consensus       158 VVigt~~~~~  167 (316)
                      |.+||.+-..
T Consensus       248 VMmGs~fAgt  257 (378)
T d1jr1a1         248 VMMGSLLAAT  257 (378)
T ss_dssp             EEESTTTTTB
T ss_pred             eeecceeeee
Confidence            9999988654

>d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.02  E-value=0.063  Score=48.73  Aligned_cols=70  Identities=20%  Similarity=0.248  Sum_probs=52.0

Q ss_pred             HHHHHHHHcCCCcceEEEecCC------------cccHHHHHHHH---HhCCCcEEEecCCC-HHHHHHHHHcCCCEEEe
Q 021156           97 EFANLYKEDGLTGGHAIMLGAD------------PLSKAAAIEAL---HAYPGGLQVGGGIN-SDNSLSYIEEGATHVIV  160 (316)
Q Consensus        97 e~a~~~~~~G~~~l~lvDLda~------------~~~~~~i~~~v---~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVi  160 (316)
                      +.++.+.++|++.+.+ -...+            -+....+.++.   +..++|++.+|||+ ..|+-++|.+|||.|.+
T Consensus       160 e~a~~L~~aGaD~VkV-GiG~Gs~CTTr~~tGvGvPq~sai~~~~~~~~~~~~~iIADGGi~~~GDi~KAla~GAd~VMl  238 (365)
T d1zfja1         160 EGARALYDAGVDVVKV-GIGPGSICTTRVVAGVGVPQVTAIYDAAAVAREYGKTIIADGGIKYSGDIVKALAAGGNAVML  238 (365)
T ss_dssp             HHHHHHHHTTCSEEEE-CSSCCTTBCHHHHTCCCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred             HHHHHHHhcCCceEEe-eecccccccCcceeeeeccchhHHHHHHHHHHhCCceEEecCCcCcchhhhhhhhccCCEEEe
Confidence            5888899999997643 44321            02233444443   35789999999999 69999999999999999


Q ss_pred             CCeeecC
Q 021156          161 TSYVFNN  167 (316)
Q Consensus       161 gt~~~~~  167 (316)
                      |+.+-..
T Consensus       239 G~~lAg~  245 (365)
T d1zfja1         239 GSMFAGT  245 (365)
T ss_dssp             STTTTTB
T ss_pred             cchhccc
Confidence            9987654

>d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase {Archaeon Thermoproteus tenax [TaxId: 2271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Archaeal fructose 1,6-bisphosphate aldolase
species: Archaeon Thermoproteus tenax [TaxId: 2271]

Probab=93.85  E-value=0.39  Score=40.75  Aligned_cols=69  Identities=22%  Similarity=0.113  Sum_probs=44.3

Q ss_pred             HHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHH-hhcCCCcEEEEeCCC--CHHHHHHH----HHhCCCcCEEEEcc
Q 021156          217 ERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALL-GKYSPIPVTYAGGVT--TMADLEKI----KVAGIGRVDVTVGS  289 (316)
Q Consensus       217 e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l-~~~~~iPVIasGGI~--s~eDi~~l----~~~G~g~~gVivG~  289 (316)
                      ..++.+.++|++-+= +...       -|.+...++ ...+.+||...||-.  +.+++.+.    ++.|  +.|+++||
T Consensus       161 ~aaria~ElGaDivK-~~~p-------~~~~~~~~~v~~a~~~pv~~~gG~~~~~~~~~l~~~~~a~~~G--a~G~~~GR  230 (251)
T d1ojxa_         161 YAARIALELGADAMK-IKYT-------GDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAG--ALGIAVGR  230 (251)
T ss_dssp             HHHHHHHHHTCSEEE-ECCC-------SSHHHHHHHHHHTTTSCEEEECCSCCSSHHHHHHHHHHHHHTT--CCEEEESH
T ss_pred             HHHHHHHHhCCCEEE-ecCC-------CcHHHHHHHHHhcCCCceEEeCCCCCCCHHHHHHHHHHHHHCC--CcEEeech
Confidence            347788899999542 3322       134444544 345678988887764  56666444    3445  99999999


Q ss_pred             chhhcc
Q 021156          290 ALDIFG  295 (316)
Q Consensus       290 Al~~~~  295 (316)
                      ++|-++
T Consensus       231 ni~q~~  236 (251)
T d1ojxa_         231 NVWQRR  236 (251)
T ss_dssp             HHHTST
T ss_pred             hhhCcC
Confidence            994334

>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Bacillus subtilis [TaxId: 1423]

Probab=93.78  E-value=0.057  Score=47.60  Aligned_cols=72  Identities=18%  Similarity=0.113  Sum_probs=47.9

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCc---------------------ccHHHHHHHHHh-CCCcEEEecCCC-HHHHHHH
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADP---------------------LSKAAAIEALHA-YPGGLQVGGGIN-SDNSLSY  150 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~---------------------~~~~~i~~~v~~-~~~pl~vGGGIr-~e~~~~~  150 (316)
                      +|. .++...++|++.+.+-.-.+..                     .....+.++... -++||+++|||| -.|+-++
T Consensus       171 ~~~-~a~~~~~~GaD~i~v~~~gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~v~viadGGIr~g~Dv~KA  249 (329)
T d1p0ka_         171 SKA-SAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEFPASTMIASGGLQDALDVAKA  249 (329)
T ss_dssp             CHH-HHHHHHHHTCSEEEEEC---------------CCGGGGTTCSCCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHH
T ss_pred             hHH-HHHHHHhcCCCEEEEcCCCCCCccccchhhcccCccchhHhHHHHHHHHHHHHhhcCCceEEEcCCcccHHHHHHH
Confidence            565 5566678899977664322210                     011222333332 369999999999 4999999


Q ss_pred             HHcCCCEEEeCCeeec
Q 021156          151 IEEGATHVIVTSYVFN  166 (316)
Q Consensus       151 l~~Gad~VVigt~~~~  166 (316)
                      +.+|||.|-+|+.++.
T Consensus       250 lalGAdaV~iGr~~l~  265 (329)
T d1p0ka_         250 IALGASCTGMAGHFLK  265 (329)
T ss_dssp             HHTTCSEEEECHHHHH
T ss_pred             HHcCCCchhccHHHHH
Confidence            9999999999997654

>d1wuea1 c.1.11.2 (A:1127-1367) N-acylamino acid racemase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: N-acylamino acid racemase
species: Enterococcus faecalis [TaxId: 1351]

Probab=93.63  E-value=0.23  Score=41.38  Aligned_cols=146  Identities=12%  Similarity=0.054  Sum_probs=96.8

Q ss_pred             CcEEEecCCC--H----HHHHHHHHcCCC--EEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeC
Q 021156          134 GGLQVGGGIN--S----DNSLSYIEEGAT--HVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTD  205 (316)
Q Consensus       134 ~pl~vGGGIr--~----e~~~~~l~~Gad--~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~  205 (316)
                      +|+-+..|+.  .    ++++.+.+.|..  ++=+|.  ..    +.+.++.+.+.++ + +.+.+|+.          .
T Consensus         5 ipv~~s~g~~~~~~~~~~~~~~~~~~G~~~~Kikvg~--~~----D~~~v~~ir~~~~-d-~~l~vDaN----------~   66 (241)
T d1wuea1           5 IPVGISLGIQEDLPQLLKQVQLAVEKGYQRVKLKIRP--GY----DVEPVALIRQHFP-N-LPLMVDAN----------S   66 (241)
T ss_dssp             EECCEEECCCSCHHHHHHHHHHHHHTTCSCEEEECBT--TB----SHHHHHHHHHHCT-T-SCEEEECT----------T
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEEEcCc--cH----HHHHHHHHHHhcc-c-cceeeccc----------c
Confidence            5666666773  2    457788889988  444453  23    4899999998884 4 56778873          2


Q ss_pred             CcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEE
Q 021156          206 RWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDV  285 (316)
Q Consensus       206 gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gV  285 (316)
                      +|...   +...+ .++.+.++..+       +.=...-|++.++++++.+++|+...-.+.+..++..+.+.+ .++.+
T Consensus        67 ~~~~~---~a~~~-~~~~~~~i~~i-------EeP~~~~~~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~-~~d~i  134 (241)
T d1wuea1          67 AYTLA---DLPQL-QRLDHYQLAMI-------EQPFAADDFLDHAQLQRELKTRICLDENIRSLKDCQVALALG-SCRSI  134 (241)
T ss_dssp             CCCGG---GHHHH-HGGGGSCCSCE-------ECCSCTTCSHHHHHHHTTCSSCEEECTTCCSHHHHHHHHHHT-CCSEE
T ss_pred             cCCHH---Hhhhh-hhhhhhhhhhh-------cCcccccchhhhhhhhcccccccccCcccccchhhhhhhhhh-hhhhh
Confidence            45422   23333 33444443321       111122378889999999999999999999999999999998 36777


Q ss_pred             EEccchhhccCcccHHHHHHHHHhhc
Q 021156          286 TVGSALDIFGGNLAYKDVVAWHAQQE  311 (316)
Q Consensus       286 ivG~Al~~~~g~~~~~~~~~~~~~~~  311 (316)
                      .+--.-  .+|--...++.+++++++
T Consensus       135 ~~d~~~--~GGit~~~~i~~~a~~~~  158 (241)
T d1wuea1         135 NLKIPR--VGGIHEALKIAAFCQEND  158 (241)
T ss_dssp             EECHHH--HTSHHHHHHHHHHHHHTT
T ss_pred             cccccc--ccCcHHHHHHHHHHHHcC
Confidence            777665  566555666666776654

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=93.61  E-value=0.58  Score=38.55  Aligned_cols=155  Identities=14%  Similarity=0.082  Sum_probs=91.8

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCcc-cHHHHHHHHHhCCCcEEEecCCC-HHHHH-----HHHHcCCCEEEeCCeeec
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADPL-SKAAAIEALHAYPGGLQVGGGIN-SDNSL-----SYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~~-~~~~i~~~v~~~~~pl~vGGGIr-~e~~~-----~~l~~Gad~VVigt~~~~  166 (316)
                      ....+|..+.+.|. .+-++..|.-.. -.+.+....+..++|+.+...-. ..++.     .....++|.|+|+|+-+.
T Consensus        26 TiaKLA~~~~~~g~-kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vlIDTaGr~  104 (207)
T d1ls1a2          26 TAAKLALYYKGKGR-RPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRL  104 (207)
T ss_dssp             HHHHHHHHHHHTTC-CEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHHHTCCEEEEECCCCS
T ss_pred             HHHHHHHHHHHCCC-cEEEEecccccchHHHHHHHHHHhcCCccccccccchhhHHHHHHHHHHhhccCcceeecccccc
Confidence            45678888888874 467888885432 23344444456788999877665 44432     223468999999998764


Q ss_pred             CCCCCHHHHHHHH---HHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHH-HcCCCEEEEeecCCccccC
Q 021156          167 NGQMDLERLKDLV---RVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFL-ASYADEFLVHGVDVEGKKL  242 (316)
Q Consensus       167 ~~~~~~eli~ei~---~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~-~~Ga~~ilvtdi~~dG~~~  242 (316)
                      .  .+.++++++.   +...++.+.+-+|.-  .+              .+..+.++.+. ..+++.+++|-+|.+... 
T Consensus       105 ~--~d~~~~~el~~~~~~~~~~~~llv~~a~--~~--------------~~~~~~~~~f~~~~~~~~~I~TKlDe~~~~-  165 (207)
T d1ls1a2         105 Q--IDEPLMGELARLKEVLGPDEVLLVLDAM--TG--------------QEALSVARAFDEKVGVTGLVLTKLDGDARG-  165 (207)
T ss_dssp             S--CCHHHHHHHHHHHHHHCCSEEEEEEEGG--GT--------------HHHHHHHHHHHHHTCCCEEEEECGGGCSSC-
T ss_pred             h--hhhhhHHHHHHHHhhcCCceEEEEeccc--cc--------------hhHHHHHHHHHhhCCCCeeEEeecCccccc-
Confidence            2  2355555554   445556666666653  11              23456676665 489999999999865442 


Q ss_pred             CCCHHHHHHHhhcCCCcEEEEeCCCCHHHH
Q 021156          243 GIDDELVALLGKYSPIPVTYAGGVTTMADL  272 (316)
Q Consensus       243 G~d~eli~~l~~~~~iPVIasGGI~s~eDi  272 (316)
                      |.   ++ .+....++||.+-|+=..++|+
T Consensus       166 G~---~l-~~~~~~~~Pi~~i~~Gq~pedl  191 (207)
T d1ls1a2         166 GA---AL-SARHVTGKPIYFAGVSEKPEGL  191 (207)
T ss_dssp             HH---HH-HHHHHHCCCEEEEC------CC
T ss_pred             hH---HH-HHHHHHCCCEEEEeCCCChhhc
Confidence            21   22 3334457888555543456655

>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: 3-keto-L-gulonate 6-phosphate decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=93.59  E-value=0.021  Score=46.57  Aligned_cols=38  Identities=11%  Similarity=0.047  Sum_probs=34.0

Q ss_pred             HhCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecC
Q 021156          130 HAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNN  167 (316)
Q Consensus       130 ~~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~  167 (316)
                      +....++.++||++.++++.+.++|||.+|+|+..++.
T Consensus       158 ~~~~~~i~~~gGi~~~~~~~~~~~Gad~iVVGr~I~~a  195 (213)
T d1q6oa_         158 SDMGFKVTVTGGLALEDLPLFKGIPIHVFIAGRSIRDA  195 (213)
T ss_dssp             HHTTCEEEEESSCCGGGGGGGTTSCCSEEEESHHHHTS
T ss_pred             hccCceEecCCCcCcCCHHHHHHcCCCEEEEChhhcCC
Confidence            34678999999999999999999999999999998864

>d1r0ma1 c.1.11.2 (A:133-375) N-acylamino acid racemase {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: N-acylamino acid racemase
species: Deinococcus radiodurans [TaxId: 1299]

Probab=93.48  E-value=0.41  Score=39.92  Aligned_cols=135  Identities=13%  Similarity=0.057  Sum_probs=87.9

Q ss_pred             HHHHHHHHcCCCEE--EeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH
Q 021156          145 DNSLSYIEEGATHV--IVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF  222 (316)
Q Consensus       145 e~~~~~l~~Gad~V--Vigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~  222 (316)
                      +.++++++.|.+.+  =+|.  -.    +.+.++.+.+.+| + +.+.+|+.          .+|...   +... .+.+
T Consensus        22 ~~~~~~~~~G~~~~KiKvg~--~~----D~~~v~~ir~~~~-d-~~l~vD~n----------~~~~~~---~a~~-~~~l   79 (243)
T d1r0ma1          22 DLVRRHVEQGYRRIKLKIKP--GW----DVQPVRATREAFP-D-IRLTVDAN----------SAYTLA---DAGR-LRQL   79 (243)
T ss_dssp             HHHHHHHHTTCSCEEEECBT--TB----SHHHHHHHHHHCT-T-SCEEEECT----------TCCCGG---GHHH-HHTT
T ss_pred             HHHHHHHHcCCCEEEEEcCc--ch----hHHHHHHHHHhcc-C-ceEEEecc----------ccCchH---HHHH-hhhh
Confidence            44678888898743  3442  12    4899999999896 3 44667873          245432   2233 2455


Q ss_pred             HHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHH
Q 021156          223 LASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKD  302 (316)
Q Consensus       223 ~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~  302 (316)
                      .+.++..+       +.-...-|++.++++++.+++|+.+.-.+.+..|+.++.+.+ .++.+.+--..  .+|--...+
T Consensus        80 ~~~~~~~i-------EeP~~~~d~~~~~~l~~~~~ipia~gE~~~~~~~~~~~i~~~-~~d~v~~d~~~--~GGit~~~~  149 (243)
T d1r0ma1          80 DEYDLTYI-------EQPLAWDDLVDHAELARRIRTPLCLDESVASASDARKALALG-AGGVINLKVAR--VGGHAESRR  149 (243)
T ss_dssp             GGGCCSCE-------ECCSCTTCSHHHHHHHHHCSSCEEESTTCCSHHHHHHHHHHT-SCSEEEECTTT--TTSHHHHHH
T ss_pred             hhccchhh-------hhhccccchHHHHHHhhcCCcccccccchhhhhhhhhhhhcc-cccceecccce--eccHHHHHH
Confidence            55554422       111122378889999999999999988999999999999988 35656665544  445445666


Q ss_pred             HHHHHHhhc
Q 021156          303 VVAWHAQQE  311 (316)
Q Consensus       303 ~~~~~~~~~  311 (316)
                      +.+++.+++
T Consensus       150 i~~~A~~~g  158 (243)
T d1r0ma1         150 VHDVAQSFG  158 (243)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHCC
Confidence            666666644

>d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 12-oxophytodienoate reductase (OPR, OYE homolog)
species: Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]

Probab=93.44  E-value=0.033  Score=50.67  Aligned_cols=53  Identities=13%  Similarity=-0.002  Sum_probs=44.1

Q ss_pred             HHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHH
Q 021156          247 ELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDV  303 (316)
Q Consensus       247 eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~  303 (316)
                      ++.+.+++.+++||+++||+ +++...++++.| .+|-|.+||++  ...|-..+.+
T Consensus       297 ~~~~~ik~~~~~pv~~~Gg~-~~~~ae~~l~~G-~~DlV~~gR~l--iaDPdlv~K~  349 (380)
T d1q45a_         297 KLMKSLRMAYNGTFMSSGGF-NKELGMQAVQQG-DADLVSYGRLF--IANPDLVSRF  349 (380)
T ss_dssp             HHHHHHHHHSCSCEEEESSC-CHHHHHHHHHTT-SCSEEEESHHH--HHCTTHHHHH
T ss_pred             HHHHHHhhccCCcEEeCCCC-CHHHHHHHHHcC-CccchhhhHHH--HHCccHHHHH
Confidence            45677777889999999998 689999999998 59999999999  8888555443

>d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Thermoproteus tenax [TaxId: 2271]

Probab=93.42  E-value=0.025  Score=47.77  Aligned_cols=49  Identities=20%  Similarity=0.326  Sum_probs=37.6

Q ss_pred             CCCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeeecCCCCCH-HHHHHHHHHh
Q 021156          132 YPGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFNNGQMDL-ERLKDLVRVV  182 (316)
Q Consensus       132 ~~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~~~~~~~~-eli~ei~~~~  182 (316)
                      -++|+.+||||+. +++..+...|+|-+.+||+..+..  || ..+.++.+.+
T Consensus       172 ~~i~vlygGgV~~~n~~~~~~~~g~dGvLVGsA~l~a~--d~~~~i~~l~~~~  222 (226)
T d1w0ma_         172 PEVSVITGAGIESGDDVAAALRLGTRGVLLASAAVKAK--DPYAKIVELAKPL  222 (226)
T ss_dssp             TTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHTCS--SHHHHHHHHHHHH
T ss_pred             CCceEEEecCcCChHHHHHHhcCCCCEEEechheecCC--CHHHHHHHHHHHH
Confidence            4689999999995 889999999999999999998641  12 3455555443

>d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Thermus thermophilus [TaxId: 274]

Probab=93.24  E-value=0.48  Score=40.50  Aligned_cols=89  Identities=17%  Similarity=0.064  Sum_probs=71.0

Q ss_pred             ccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          212 DVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       212 ~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      .+++.+.++.+++.|+..+-+.   .|..+-+-+++.++.+++.+++||..--=|-++-++.+...+|  +++|.+-.++
T Consensus        64 ~~dp~~~A~~y~~~GA~aiSVL---Te~~~F~Gs~~dl~~v~~~~~iPvLrKDFIid~~QI~ea~~~G--ADaVLLIaal  138 (254)
T d1vc4a_          64 EVDPVEAALAYARGGARAVSVL---TEPHRFGGSLLDLKRVREAVDLPLLRKDFVVDPFMLEEARAFG--ASAALLIVAL  138 (254)
T ss_dssp             SCCHHHHHHHHHHTTCSEEEEE---CCCSSSCCCHHHHHHHHHHCCSCEEEESCCCSHHHHHHHHHTT--CSEEEEEHHH
T ss_pred             cCCHHHHHHHHHhcCCceEEEE---cCcccccccHHHHHHHHHHcCCCcccCCccccHHHHHHHHhcc--chHHHHHHHH
Confidence            4689999999999999987432   2455566688888899888999999999999999999999999  8999988888


Q ss_pred             hhccCcccHHHHHHHHHh
Q 021156          292 DIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       292 ~~~~g~~~~~~~~~~~~~  309 (316)
                        ...  .+.++.+.+..
T Consensus       139 --l~~--~l~~l~~~A~~  152 (254)
T d1vc4a_         139 --LGE--LTGAYLEEARR  152 (254)
T ss_dssp             --HGG--GHHHHHHHHHH
T ss_pred             --HHH--HHHHHHHHHHH
Confidence              643  34555554443

>d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Trimethylamine dehydrogenase, N-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.96  E-value=0.11  Score=46.16  Aligned_cols=82  Identities=5%  Similarity=-0.060  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHcCCCcceEEEecCC-------c------ccHHHHHHHHH-hCCCcEEEecCCC-HHHHHHHHHcC-CCEE
Q 021156           95 AAEFANLYKEDGLTGGHAIMLGAD-------P------LSKAAAIEALH-AYPGGLQVGGGIN-SDNSLSYIEEG-ATHV  158 (316)
Q Consensus        95 p~e~a~~~~~~G~~~l~lvDLda~-------~------~~~~~i~~~v~-~~~~pl~vGGGIr-~e~~~~~l~~G-ad~V  158 (316)
                      ....+..+.+.+++.+++-..+-.       .      .......+.++ .+++||++-|||+ .++++++++.| ||.|
T Consensus       239 ~~~~~~~l~~~~vd~~~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~G~i~~~~~a~~~l~~G~aDlV  318 (340)
T d1djqa1         239 DGQKFVEMADSLVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVSKKPVLGVGRYTDPEKMIEIVTKGYADII  318 (340)
T ss_dssp             HHHHHHHHHTTTCSEEEEEESCSTTGGGTSCCTTTCCTTTTHHHHHHHHTTCSSCEEECSCCCCHHHHHHHHHTTSCSBE
T ss_pred             hHHHHHHHHhhccceeeeeecccccccccccccccCCccccHHHHHHHHHHcCCeEEEECCCCCHHHHHHHHHCCCccch
Confidence            344555666777776665443211       0      11223345555 4789999999998 59999999999 9999


Q ss_pred             EeCCeeecCCCCCHHHHHHHHH
Q 021156          159 IVTSYVFNNGQMDLERLKDLVR  180 (316)
Q Consensus       159 Vigt~~~~~~~~~~eli~ei~~  180 (316)
                      .+|-.++.|    |++++++.+
T Consensus       319 ~~gR~~iad----Pdl~~k~~~  336 (340)
T d1djqa1         319 GCARPSIAD----PFLPQKVEQ  336 (340)
T ss_dssp             EESHHHHHC----TTHHHHHHT
T ss_pred             hhHHHHHHC----ccHHHHHHc
Confidence            999999998    999998865

>d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Tritrichomonas foetus [TaxId: 5724]

Probab=92.89  E-value=0.046  Score=49.56  Aligned_cols=71  Identities=17%  Similarity=0.137  Sum_probs=50.8

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCC------------cccHHHHHHHHHh---------CCCcEEEecCCC-HHHHHHHH
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGAD------------PLSKAAAIEALHA---------YPGGLQVGGGIN-SDNSLSYI  151 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~------------~~~~~~i~~~v~~---------~~~pl~vGGGIr-~e~~~~~l  151 (316)
                      .| +.++.+.++|++.+. |.+..+            -+....+.++...         ..+|++.+|||| +.|+-++|
T Consensus       162 T~-e~~~~L~~aGaD~vk-VGIG~Gs~CTTr~~tGvG~Pq~sAv~e~a~~~~~~~~~~~~~v~iiaDGGi~~~gdi~KAl  239 (362)
T d1pvna1         162 DG-EGFRYLADAGADFIK-IGIGGGSICITREQKGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLAL  239 (362)
T ss_dssp             SH-HHHHHHHHHTCSEEE-ECSSCSTTBCHHHHTCBCCCHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHH
T ss_pred             CH-HHHHHHHHhCCcEEE-ecccccccccchhhhccCCchHHHHHHHHHHHHHhhhhcccCCceeeccccCcccceeEEE
Confidence            45 578888899988433 333211            1334455555431         258999999999 69999999


Q ss_pred             HcCCCEEEeCCeeec
Q 021156          152 EEGATHVIVTSYVFN  166 (316)
Q Consensus       152 ~~Gad~VVigt~~~~  166 (316)
                      .+|||.|.+|+.+-.
T Consensus       240 a~GAd~VM~G~~lAg  254 (362)
T d1pvna1         240 AMGADFIMLGRYFAR  254 (362)
T ss_dssp             HTTCSEEEESHHHHT
T ss_pred             EEeccceeehhhhhc
Confidence            999999999997654

>d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Phosphoenolpyruvate mutase/Isocitrate lyase-like
domain: Phosphoenolpyruvate mutase
species: Blue mussel (Mytilus edulis) [TaxId: 6550]

Probab=92.60  E-value=0.49  Score=40.76  Aligned_cols=176  Identities=14%  Similarity=0.063  Sum_probs=99.4

Q ss_pred             CHHHHHHHHHHcCCCcceEEEec--CC---c----ccHHH----HHHHHHhCCCcEEEec--CC----CH-HHHHHHHHc
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLG--AD---P----LSKAA----AIEALHAYPGGLQVGG--GI----NS-DNSLSYIEE  153 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLd--a~---~----~~~~~----i~~~v~~~~~pl~vGG--GI----r~-e~~~~~l~~  153 (316)
                      |+. -|+..+++|++.+++--..  +.   +    ....+    +.++++.+++|+++++  |.    +. +.++.+.++
T Consensus        25 Da~-SAr~~e~aGf~a~~~ss~~~aas~G~pD~~~lt~~e~~~~~~~I~~~~~lPv~~D~d~GyG~~~~v~~tv~~~~~a  103 (275)
T d1s2wa_          25 NGL-SARIVQEAGFKGIWGSGLSVSAQLGVRDSNEASWTQVVEVLEFMSDASDVPILLDADTGYGNFNNARRLVRKLEDR  103 (275)
T ss_dssp             SHH-HHHHHHHHTCSCEEECCHHHHHTC---------CHHHHHHHHHHHHTCSSCEEEECCSSCSSHHHHHHHHHHHHHT
T ss_pred             CHH-HHHHHHHcCCCEEEhhHHHHHHHcCCCCCCccchhhHHHHHHhhhcccCCceeEecccccccchHHHHHHHHHHHh
Confidence            677 7788888888865543211  00   0    12222    3444456889999863  22    23 668999999


Q ss_pred             CCCEEEeCCeeec-C-----CC----CCH-HHHHHHHHHh----cCc-eEEEeeeeeecCCeeEEEeCCcceecccCHHH
Q 021156          154 GATHVIVTSYVFN-N-----GQ----MDL-ERLKDLVRVV----GKQ-RLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDE  217 (316)
Q Consensus       154 Gad~VVigt~~~~-~-----~~----~~~-eli~ei~~~~----G~~-~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e  217 (316)
                      |+.-+.|=-..+. .     ++    .+. +...++....    .++ -|+.-.|.+.       ...|+.     +.++
T Consensus       104 Gaagi~iEDq~~pk~~~~~~~~~~~~~~~~~~~~ki~aa~~~~~~~~~~i~ARtDa~~-------~~~gl~-----eai~  171 (275)
T d1s2wa_         104 GVAGACLEDKLFPKTNSLHDGRAQPLADIEEFALKIKACKDSQTDPDFCIVARVEAFI-------AGWGLD-----EALK  171 (275)
T ss_dssp             TCCEEEEECBCC--------CTTCCBCCHHHHHHHHHHHHHHCSSTTCEEEEEECTTT-------TTCCHH-----HHHH
T ss_pred             ccceeEeeccccccccccccccccccccHHHHHHHHHhhhhhccCcceeEEecchhhh-------hcCCHH-----HHHH
Confidence            9999888332211 0     11    122 2333333222    111 1333333320       001111     4678


Q ss_pred             HHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHh--hcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          218 RVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLG--KYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       218 ~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~--~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      .++.+.+.|++.+.++....+       .+.++.+.  ...++|+.++.+-...-.+.+|.++|  +.-++.|..+
T Consensus       172 R~~aY~eAGAD~vf~~~~~~~-------~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~eL~~lG--v~~v~~g~~~  238 (275)
T d1s2wa_         172 RAEAYRNAGADAILMHSKKAD-------PSDIEAFMKAWNNQGPVVIVPTKYYKTPTDHFRDMG--VSMVIWANHN  238 (275)
T ss_dssp             HHHHHHHTTCSEEEECCCSSS-------SHHHHHHHHHHTTCSCEEECCSTTTTSCHHHHHHHT--CCEEEECSHH
T ss_pred             HHHHHHhcCCCeeeeccccCc-------HHHHHHHHHhhcCCCCEEEecccccccHHHHHHHcC--CCEEEEchHH
Confidence            899999999999888776432       13333333  23567888876544333467788898  8889988877

>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.59  E-value=0.032  Score=46.56  Aligned_cols=82  Identities=16%  Similarity=0.156  Sum_probs=58.2

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHHh--CCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecCCCCC
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALHA--YPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNNGQMD  171 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~~--~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~~~~~  171 (316)
                      +|-|+...+ ++|++.+.++--+..   -...++.++.  -++|++.-|||+.+++..|+++|+..|.+||...+.   +
T Consensus       112 TpsEi~~A~-~~G~~~lK~fPa~~~---G~~~lk~l~~p~p~i~~iptGGI~~~n~~~~l~aga~avg~Gs~l~~~---~  184 (202)
T d1wa3a1         112 TPTELVKAM-KLGHTILKLFPGEVV---GPQFVKAMKGPFPNVKFVPTGGVNLDNVCEWFKAGVLAVGVGSALVKG---T  184 (202)
T ss_dssp             SHHHHHHHH-HTTCCEEEETTHHHH---HHHHHHHHHTTCTTCEEEEBSSCCTTTHHHHHHHTCSCEEECHHHHCS---C
T ss_pred             cHHHHHHHH-HCCCCEEEecchhhc---CHHHHHHHhCcccCCcEEeeCCCCHHHHHHHHHCCCeEEEEchhhcCC---C
Confidence            677777665 567776665332211   1234455553  258999999999899999999999999999998875   4


Q ss_pred             HHHHHHHHHHh
Q 021156          172 LERLKDLVRVV  182 (316)
Q Consensus       172 ~eli~ei~~~~  182 (316)
                      ++.+++-.+.+
T Consensus       185 ~~~i~~~a~~~  195 (202)
T d1wa3a1         185 PDEVREKAKAF  195 (202)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77776666554

>d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Plasmodium falciparum [TaxId: 5833]

Probab=92.41  E-value=0.065  Score=49.21  Aligned_cols=86  Identities=22%  Similarity=0.199  Sum_probs=60.1

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCc----------------ccH---HHHHHHH-HhC--CCcEEEecCCCH-HHHHHH
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADP----------------LSK---AAAIEAL-HAY--PGGLQVGGGINS-DNSLSY  150 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~----------------~~~---~~i~~~v-~~~--~~pl~vGGGIr~-e~~~~~  150 (316)
                      +..++++...+.|++++.+..--...                ...   ..++..+ +.+  .+||+--|||.+ +|+.+.
T Consensus       281 ~i~~i~~~~~~~g~dgii~~Nt~~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~v~~~~~~~ipIIGvGGI~s~~Da~e~  360 (409)
T d1tv5a1         281 QKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEK  360 (409)
T ss_dssp             HHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHH
T ss_pred             hhHHHHHHHHhccccceecccccccccccccccccCCcccchhHHHHHHHHHHHHHHHcCCCceEEEECCCCCHHHHHHH
Confidence            45678888888999988776633110                111   2222333 334  489999999985 999999


Q ss_pred             HHcCCCEEEeCCeeecCCCCCHHHHHHHHHHh
Q 021156          151 IEEGATHVIVTSYVFNNGQMDLERLKDLVRVV  182 (316)
Q Consensus       151 l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~  182 (316)
                      +.+||+.|=|+|.+...|   |.++.++.+..
T Consensus       361 i~AGAs~VQv~T~li~~G---p~~v~~I~~~L  389 (409)
T d1tv5a1         361 IEAGASVCQLYSCLVFNG---MKSAVQIKREL  389 (409)
T ss_dssp             HHTTEEEEEESHHHHHHG---GGHHHHHHHHH
T ss_pred             HHcCCCHHhhhhHHHhcC---hHHHHHHHHHH
Confidence            999999999999875432   77777776554

>d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Putative flavin oxidoreducatase TM0096
species: Thermotoga maritima [TaxId: 2336]

Probab=91.94  E-value=0.08  Score=46.67  Aligned_cols=84  Identities=14%  Similarity=0.099  Sum_probs=61.4

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCC-----cccHHHHHHHHHhCCCcEEEecCCC-HHHHHHHHH-cCCCEEEeCCeee
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGAD-----PLSKAAAIEALHAYPGGLQVGGGIN-SDNSLSYIE-EGATHVIVTSYVF  165 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~-----~~~~~~i~~~v~~~~~pl~vGGGIr-~e~~~~~l~-~Gad~VVigt~~~  165 (316)
                      .+..++++.+.++|++.+.|===.+.     ..+++.+ ..++ ..+|++.-|||. .+|+.+.++ .|||.|.||-.++
T Consensus       136 ~~~~~~~~~l~~~G~~~itvH~Rt~~q~~~~~a~~~~i-~~~~-~~ipvi~NGdI~s~~d~~~~l~~tg~dgVMiGRgal  213 (305)
T d1vhna_         136 NEVEEIYRILVEEGVDEVFIHTRTVVQSFTGRAEWKAL-SVLE-KRIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAI  213 (305)
T ss_dssp             CCHHHHHHHHHHTTCCEEEEESSCTTTTTSSCCCGGGG-GGSC-CSSCEEEESSCCSHHHHHHHHHHHCCSEEEESGGGT
T ss_pred             chhhHHHHHHHHhCCcEEEechhhhhhccccchhhhHH-Hhhh-hhhhhhcccccccHHHHHHHHHhcCCCeEehhHHHH
Confidence            45678999999998876553211111     1244433 3333 369999999998 599999887 6999999999999


Q ss_pred             cCCCCCHHHHHHHHHHh
Q 021156          166 NNGQMDLERLKDLVRVV  182 (316)
Q Consensus       166 ~~~~~~~eli~ei~~~~  182 (316)
                      .|    |.++.++.+.+
T Consensus       214 ~n----P~if~~i~~~l  226 (305)
T d1vhna_         214 GR----PWIFKQIKDFL  226 (305)
T ss_dssp             TC----TTHHHHHHHHH
T ss_pred             Hh----hhHhhhhhhhh
Confidence            98    99999987654

>d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=91.90  E-value=0.34  Score=39.88  Aligned_cols=150  Identities=12%  Similarity=0.047  Sum_probs=79.0

Q ss_pred             HHHHHHhCCCcEEEecCCC----H--HHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHH---HHHhcCceEEEeeeeee
Q 021156          125 AIEALHAYPGGLQVGGGIN----S--DNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDL---VRVVGKQRLVLDLSCRK  195 (316)
Q Consensus       125 i~~~v~~~~~pl~vGGGIr----~--e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei---~~~~G~~~IvvslD~k~  195 (316)
                      +.+..+..+.|+..+-=..    +  ..++.++++|||.+.+-+..-      ++.++.+   .+.++. .+.+-.... 
T Consensus        46 v~~l~~~~~~~i~~D~K~~DIg~t~~~~~~~~~~~gad~~TVh~~~g------~~~i~~~~~~a~~~~~-~~~~l~~~s-  117 (212)
T d1km4a_          46 IAEFRKRFGCRIIADFAVADIPETNEKICRATFKAGADAIIVHGFPG------ADSVRACLNVAEEMGR-EVFLLTEMS-  117 (212)
T ss_dssp             HHHHHHHHCCEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESTTC------HHHHHHHHHHHHHHTC-EEEEECSCS-
T ss_pred             HHHHHHhcccceehhhhhhccccHHHHhHhhhccccccEEEEeccCC------hHHHHHHHHHHHhcCC-ccccchhhc-
Confidence            3333344677888764432    2  337778899999988865432      3444444   445542 222211111 


Q ss_pred             cCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcC-CCcEEEEeCCCCHH-HHH
Q 021156          196 KDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYS-PIPVTYAGGVTTMA-DLE  273 (316)
Q Consensus       196 ~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~-~iPVIasGGI~s~e-Di~  273 (316)
                        .      .++.........+.++...+.|++.++.         ..-..+.++.+++.+ +-.++..+||+... +..
T Consensus       118 --~------~~~~~~~~~~~~~~~~~~~~~g~~g~v~---------~~~~~~~i~~ir~~~~~~~~~vtpGI~~~g~~~~  180 (212)
T d1km4a_         118 --H------PGAEMFIQGAADEIARMGVDLGVKNYVG---------PSTRPERLSRLREIIGQDSFLISPGVGAQGGDPG  180 (212)
T ss_dssp             --S------GGGGTTHHHHHHHHHHHHHHHTCCEEEC---------CTTCHHHHHHHHHHHCSSSEEEECCBSTTSBCHH
T ss_pred             --c------hhhhhhhhhHHHHHHHHHHHhCCccccc---------cccCHHHHhhhhhccCCceeEEcCccccCCCCHH
Confidence              0      1111111112344455556667765431         112345666776654 45688899997532 222


Q ss_pred             HHHHhCCCcCEEEEccchhhccCcccHHHHHH
Q 021156          274 KIKVAGIGRVDVTVGSALDIFGGNLAYKDVVA  305 (316)
Q Consensus       274 ~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~  305 (316)
                      +.+ .+  ++.+||||++  |. .-++.+..+
T Consensus       181 d~~-~~--ad~iIvGR~I--~~-a~dP~~aa~  206 (212)
T d1km4a_         181 ETL-RF--ADAIIVGRSI--YL-ADNPAAAAA  206 (212)
T ss_dssp             HHT-TT--CSEEEECHHH--HT-SSSHHHHHH
T ss_pred             HHH-hh--CCEEEECchh--cc-CCCHHHHHH
Confidence            222 24  7889999999  74 344444443

>d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=91.85  E-value=0.24  Score=41.93  Aligned_cols=41  Identities=20%  Similarity=0.300  Sum_probs=31.4

Q ss_pred             hCCCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHH
Q 021156          131 AYPGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLV  179 (316)
Q Consensus       131 ~~~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~  179 (316)
                      ...+++-+.||||+ +++..++++||+++  ||..-      +++++++.
T Consensus       190 ~~~vgIKasGGIrt~~~a~~~i~aGa~rI--GtSs~------~~I~~e~~  231 (234)
T d1n7ka_         190 PLGMGVKASGGIRSGIDAVLAVGAGADII--GTSSA------VKVLESFK  231 (234)
T ss_dssp             GGTCEEEEESSCCSHHHHHHHHHTTCSEE--EETTH------HHHHHHHH
T ss_pred             CCCCcEEeeCCcCCHHHHHHHHHccCcee--ecchH------HHHHHHHH
Confidence            34578999999995 99999999999985  65431      56666653

>d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]

Probab=91.82  E-value=0.058  Score=49.33  Aligned_cols=69  Identities=19%  Similarity=0.145  Sum_probs=47.8

Q ss_pred             HHHHHHHHcCCCcceEEEec-CC-----------cccHHHHHHHH---HhCCCcEEEecCCC-HHHHHHHHHcCCCEEEe
Q 021156           97 EFANLYKEDGLTGGHAIMLG-AD-----------PLSKAAAIEAL---HAYPGGLQVGGGIN-SDNSLSYIEEGATHVIV  160 (316)
Q Consensus        97 e~a~~~~~~G~~~l~lvDLd-a~-----------~~~~~~i~~~v---~~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVi  160 (316)
                      +.|+.+.++|++.+.+ -.. +.           -+....+.++.   +...+|++.+|||| ..|+-++|.+|||.|.+
T Consensus       204 e~a~~L~~~GaD~VkV-GiGpGs~CtTr~~~GvG~pq~sai~~~~~~~~~~~vpiIADGGi~~~Gdi~KAla~GAd~VMl  282 (388)
T d1eepa_         204 EAALDLISVGADCLKV-GIGPGSICTTRIVAGVGVPQITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVMI  282 (388)
T ss_dssp             HHHHHHHTTTCSEEEE-CSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred             HHHHHHHhcCCCeeee-ccccccccccccccccCcchHHHHHHHHHHhccCCceEEeccccCcCCceeeeEEeccceeec
Confidence            4677777778775443 221 11           01233344443   24679999999999 69999999999999999


Q ss_pred             CCeeec
Q 021156          161 TSYVFN  166 (316)
Q Consensus       161 gt~~~~  166 (316)
                      |+.+-.
T Consensus       283 G~~lAg  288 (388)
T d1eepa_         283 GNLFAG  288 (388)
T ss_dssp             CHHHHT
T ss_pred             chhhhc
Confidence            998654

>d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Thermotoga maritima [TaxId: 2336]

Probab=91.76  E-value=0.27  Score=42.02  Aligned_cols=43  Identities=19%  Similarity=0.314  Sum_probs=35.4

Q ss_pred             CCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhc
Q 021156          133 PGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVG  183 (316)
Q Consensus       133 ~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G  183 (316)
                      .+.+=+.|||| .+++..++++||+++  ||..  .    +++++++..++|
T Consensus       208 ~~giKasGGIrt~~~a~~~i~aGa~ri--GtSs--~----~~i~~~~~~r~G  251 (251)
T d1o0ya_         208 EMGVKASGGIRTFEDAVKMIMYGADRI--GTSS--G----VKIVQGGEERYG  251 (251)
T ss_dssp             TSEEEEESSCCSHHHHHHHHHTTCSEE--EESC--H----HHHHHHHHHHCC
T ss_pred             CceEeccCCcCCHHHHHHHHHHhhHHh--CCCc--H----HHHhhhHhhcCC
Confidence            46788999999 599999999999995  7653  1    788999888775

>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Aerobic respiration control protein ArcA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.66  E-value=1  Score=33.23  Aligned_cols=82  Identities=12%  Similarity=0.042  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhc
Q 021156          215 LDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIF  294 (316)
Q Consensus       215 ~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~  294 (316)
                      ..+....+.+.-.+- ++.|+.-.+ +.|  +++++++++..++|+|+-.|-.+.++..+++++|  +++      +  .
T Consensus        35 ~~~al~~l~~~~~dl-ii~D~~mp~-~~G--~~~~~~~r~~~~~pii~lt~~~~~~~~~~a~~~G--a~d------y--l  100 (121)
T d1xhfa1          35 GAEMHQILSEYDINL-VIMDINLPG-KNG--LLLARELREQANVALMFLTGRDNEVDKILGLEIG--ADD------Y--I  100 (121)
T ss_dssp             HHHHHHHHHHSCCSE-EEECSSCSS-SCH--HHHHHHHHHHCCCEEEEEESCCSHHHHHHHHHHT--CSE------E--E
T ss_pred             hHHHHHHHHhcCCCE-EEeecccCC-ccC--cHHHHHHHhcCCCcEEEEECCCCHHHHHHHHHcC--CCE------E--E
Confidence            345555666666774 457775432 233  6889999888899999999999999999999999  543      3  5


Q ss_pred             cCcccHHHHHHHHHhh
Q 021156          295 GGNLAYKDVVAWHAQQ  310 (316)
Q Consensus       295 ~g~~~~~~~~~~~~~~  310 (316)
                      ..|++.+++.+-.++.
T Consensus       101 ~KP~~~~~L~~~v~~~  116 (121)
T d1xhfa1         101 TKPFNPRELTIRARNL  116 (121)
T ss_dssp             ESSCCHHHHHHHHHHH
T ss_pred             eCCCCHHHHHHHHHHH
Confidence            6788888888766553

>d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Thiamin phosphate synthase
family: Thiamin phosphate synthase
domain: Thiamin phosphate synthase
species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]

Probab=91.62  E-value=0.23  Score=40.78  Aligned_cols=73  Identities=19%  Similarity=0.099  Sum_probs=51.6

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCC-------cccHHHHHHHHHhCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeec
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGAD-------PLSKAAAIEALHAYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~-------~~~~~~i~~~v~~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      +..++ +.....|++.+-+=-+-.+       +.....+.+.++..++|+..=|||+.+++..+++.||+.|.+.++.++
T Consensus       108 ~~~e~-~~a~~~g~DYi~~gpvf~T~tk~~~~~~g~~~l~~~~~~~~~Pv~AiGGI~~~ni~~~~~~Ga~gvAvis~I~~  186 (206)
T d1xi3a_         108 SLEEA-LEAEKKGADYLGAGSVFPTKTKEDARVIGLEGLRKIVESVKIPVVAIGGINKDNAREVLKTGVDGIAVISAVMG  186 (206)
T ss_dssp             SHHHH-HHHHHHTCSEEEEECSSCC----CCCCCHHHHHHHHHHHCSSCEEEESSCCTTTHHHHHTTTCSEEEESHHHHT
T ss_pred             CHHHH-HHHHhcCCCEEEeccccccccccccccccHHHHHHHHHhcCCCEEEECCCCHHHHHHHHHhCCCEEEEhHHHHC
Confidence            55544 4444567774433222211       123555666667789999999999999999999999999999999886


Q ss_pred             C
Q 021156          167 N  167 (316)
Q Consensus       167 ~  167 (316)
                      .
T Consensus       187 ~  187 (206)
T d1xi3a_         187 A  187 (206)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Morphinone reductase
species: Pseudomonas putida [TaxId: 303]

Probab=91.50  E-value=0.18  Score=45.56  Aligned_cols=79  Identities=15%  Similarity=0.112  Sum_probs=56.0

Q ss_pred             HHHHHHHcCCCcceEEEecCC--c-ccHHHHHHHH-HhCCCcEEEecCCCHHHHHHHHHcC-CCEEEeCCeeecCCCCCH
Q 021156           98 FANLYKEDGLTGGHAIMLGAD--P-LSKAAAIEAL-HAYPGGLQVGGGINSDNSLSYIEEG-ATHVIVTSYVFNNGQMDL  172 (316)
Q Consensus        98 ~a~~~~~~G~~~l~lvDLda~--~-~~~~~i~~~v-~~~~~pl~vGGGIr~e~~~~~l~~G-ad~VVigt~~~~~~~~~~  172 (316)
                      .++.+...|++.+|+-.-+-.  . .......+.+ +.+.+|+++.|+++.+.++++++.| ||.|.+|-.++.|    |
T Consensus       257 ~~~~ld~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pvi~~G~i~~~~ae~~l~~g~aDlV~~gR~~iad----P  332 (374)
T d1gwja_         257 LAGELDRRGLAYLHFNEPDWIGGDITYPEGFREQMRQRFKGGLIYCGNYDAGRAQARLDDNTADAVAFGRPFIAN----P  332 (374)
T ss_dssp             HHHHHHHHTCSEEEEECSCBTTBCCCCCTTHHHHHHHHCCSEEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHC----T
T ss_pred             hhccccccCceEEEeccCcccCCCcchhHHHHHHHHHHcCCCEEEECCcCHHHHHHHHHcCCCcEehhhHHHHHC----c
Confidence            344455567776665433211  1 1111223334 4688999999999888899999987 9999999999998    9


Q ss_pred             HHHHHHHH
Q 021156          173 ERLKDLVR  180 (316)
Q Consensus       173 eli~ei~~  180 (316)
                      ++..++.+
T Consensus       333 d~~~K~~~  340 (374)
T d1gwja_         333 DLPERFRL  340 (374)
T ss_dssp             THHHHHHH
T ss_pred             cHHHHHHc
Confidence            99999887

>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Alpha subunit of glutamate synthase, central and FMN domains
species: Azospirillum brasilense [TaxId: 192]

Probab=91.42  E-value=0.89  Score=44.58  Aligned_cols=74  Identities=19%  Similarity=0.270  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHcCCCEEEEeecCCccccC---------CCCHHH-HHHH----hhc---CCCcEEEEeCCCCHHHHHHHHH
Q 021156          215 LDERVLDFLASYADEFLVHGVDVEGKKL---------GIDDEL-VALL----GKY---SPIPVTYAGGVTTMADLEKIKV  277 (316)
Q Consensus       215 ~~e~a~~~~~~Ga~~ilvtdi~~dG~~~---------G~d~el-i~~l----~~~---~~iPVIasGGI~s~eDi~~l~~  277 (316)
                      ..+.+....+.|+|.|++-..+ -||..         |..|+. +.+.    .+.   -.+.++++||+.+..|+..++.
T Consensus       584 ~~~i~~~v~ka~~D~I~IdG~e-GGTGAap~~~~d~~GlP~~~~l~~~~~~L~~~glr~~V~l~a~Ggl~t~~Dv~ka~a  662 (771)
T d1ea0a2         584 IGTIAAGVAKANADIILISGNS-GGTGASPQTSIKFAGLPWEMGLSEVHQVLTLNRLRHRVRLRTDGGLKTGRDIVIAAM  662 (771)
T ss_dssp             HHHHHHHHHHTTCSEEEEECTT-CCCSSEETTHHHHSCCCHHHHHHHHHHHHHTTTCTTTSEEEEESSCCSHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCEEEEecCC-CccccccHHHhhcCCcCHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCHHHHHHHHH
Confidence            4566777778899987754432 34542         555552 3222    221   2589999999999999999999


Q ss_pred             hCCCcCEEEEccch
Q 021156          278 AGIGRVDVTVGSAL  291 (316)
Q Consensus       278 ~G~g~~gVivG~Al  291 (316)
                      +|  ++.|-+|+++
T Consensus       663 LG--AD~v~~gt~~  674 (771)
T d1ea0a2         663 LG--AEEFGIGTAS  674 (771)
T ss_dssp             TT--CSEEECCHHH
T ss_pred             hC--CCchHHhHHH
Confidence            99  8999999876

>d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=91.14  E-value=0.068  Score=46.90  Aligned_cols=50  Identities=18%  Similarity=0.189  Sum_probs=38.9

Q ss_pred             HhC-CCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHh
Q 021156          130 HAY-PGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVV  182 (316)
Q Consensus       130 ~~~-~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~  182 (316)
                      +.. ..|++.+|||. -+|+.+++.+||+.|-++|++...|   |+.++++.+..
T Consensus       238 ~~~~~~~Iig~GGI~s~~Da~e~i~aGAs~Vqv~Tal~~~G---p~~i~~i~~~L  289 (312)
T d2b4ga1         238 RRCPDKLVFGCGGVYSGEEAFLHILAGASMVQVGTALHDEG---PIIFARLNKEL  289 (312)
T ss_dssp             HHCTTSEEEEESSCCSHHHHHHHHHHTEEEEEESHHHHHHC---TTHHHHHHHHH
T ss_pred             HHcCCCceeecCCcCCHHHHHHHHHcCCChheeehhhHhcC---cHHHHHHHHHH
Confidence            344 46788999998 5999999999999999999986543   66666665543

>d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Phosphoenolpyruvate mutase/Isocitrate lyase-like
domain: 2-methylisocitrate lyase
species: Escherichia coli [TaxId: 562]

Probab=90.97  E-value=0.26  Score=42.95  Aligned_cols=174  Identities=13%  Similarity=0.097  Sum_probs=104.0

Q ss_pred             CHHHHHHHHHHcCCCcceEEE--ecCC----c----ccHHH----HHHHHHhCCCcEEEec-----C-C-CH-HHHHHHH
Q 021156           94 SAAEFANLYKEDGLTGGHAIM--LGAD----P----LSKAA----AIEALHAYPGGLQVGG-----G-I-NS-DNSLSYI  151 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvD--Lda~----~----~~~~~----i~~~v~~~~~pl~vGG-----G-I-r~-e~~~~~l  151 (316)
                      ||. -|+..+++|++-+++-=  +.+.    +    ....+    +.++++.+++|+++++     | . +. +.++++.
T Consensus        25 D~~-sA~~~e~~Gf~a~~~sg~~~sa~~~G~pD~~~~~~~e~~~~~~~i~~a~~~Pvi~D~d~GyG~~~~~v~~~v~~~~  103 (289)
T d1muma_          25 NAN-HALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVCSLPLLVDADIGFGSSAFNVARTVKSMI  103 (289)
T ss_dssp             SHH-HHHHHHHTTCSCEEECHHHHHHTTSCCCSSSCCCHHHHHHHHHHHHHHCCSCEEEECTTCSSSSHHHHHHHHHHHH
T ss_pred             CHH-HHHHHHHcCCCEEEhhHHHHHHHccCCCCCCCCChHHHHHHHHHHhcccCCCeeecccccccccchHHHHHHHHHH
Confidence            787 67888888988655421  1111    1    12333    3444556899999963     3 2 33 6689999


Q ss_pred             HcCCCEEEeCCeee-cC-----C-CC-C-HHHHHHHHHHh---cC-ce-EEEeeeeeecCCeeEEEeCCcceecccCHHH
Q 021156          152 EEGATHVIVTSYVF-NN-----G-QM-D-LERLKDLVRVV---GK-QR-LVLDLSCRKKDGKYAIVTDRWQKFSDVYLDE  217 (316)
Q Consensus       152 ~~Gad~VVigt~~~-~~-----~-~~-~-~eli~ei~~~~---G~-~~-IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e  217 (316)
                      ++|+.-+.|=-... +.     + .+ + .+.+.++....   +. +- |+.-.|...        ..|+.     +.++
T Consensus       104 ~aGvagi~iEDq~~pk~~g~~~~~~~~~~~e~~~ki~aa~~a~~~~d~~IiARTDa~~--------~~g~~-----eAi~  170 (289)
T d1muma_         104 KAGAAGLHIEDQVGAKRCGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDALA--------VEGLD-----AAIE  170 (289)
T ss_dssp             HHTCSEEEEECBCCCSSTTCCSCCCBCCHHHHHHHHHHHHHTCSSTTSEEEEEECCHH--------HHCHH-----HHHH
T ss_pred             HCCCCEEEecCcccccccccccccceecHHHHHHHHHHHHHhcCCcchhheecccccc--------ccCHH-----HHHH
Confidence            99999888732221 11     1 11 1 24444444322   11 11 333334321        01222     4678


Q ss_pred             HHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEE---EeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          218 RVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTY---AGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       218 ~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIa---sGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      .++.+.+.|++.+.++.+.        +.+.++++++.+++|+.+   .||-...-++.+|.++|  +.-++.+..+
T Consensus       171 R~~aY~eAGAD~vf~~~~~--------~~~~~~~~~~~~~~Pl~~~~~~~~~~p~~s~~eL~~~G--v~~v~~~~~~  237 (289)
T d1muma_         171 RAQAYVEAGAEMLFPEAIT--------ELAMYRQFADAVQVPILANITEFGATPLFTTDELRSAH--VAMALYPLSA  237 (289)
T ss_dssp             HHHHHHHTTCSEEEETTCC--------CHHHHHHHHHHHCSCBEEECCSSSSSCCCCHHHHHHTT--CSEEEESSHH
T ss_pred             HHHHhhhcCCcEEEecCCC--------CHHHHHHHHHhcCCCEEEeecCcCCCccchHHHHHHhc--cceEEechHH
Confidence            8999999999988765442        567888998877777643   35544433577889998  8888888766

>d1eixa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Escherichia coli [TaxId: 562]

Probab=90.97  E-value=0.24  Score=41.46  Aligned_cols=162  Identities=9%  Similarity=-0.031  Sum_probs=87.8

Q ss_pred             HHHHHHHhCCCcEEEecCCC----H--HHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHH---HhcCceE-EEeeee
Q 021156          124 AAIEALHAYPGGLQVGGGIN----S--DNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVR---VVGKQRL-VLDLSC  193 (316)
Q Consensus       124 ~i~~~v~~~~~pl~vGGGIr----~--e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~---~~G~~~I-vvslD~  193 (316)
                      .+++.+++.+.++..+-=..    +  ..++.+++.|++.+.+.+..  .    ++.++.+.+   .++++.. ++.+..
T Consensus        45 ~~i~~l~~~~~~if~D~K~~DI~nt~~~~~~~~~~~~~~~~tvh~~~--g----~~~l~~~~~~~~~~~~~~~~~~~v~~  118 (231)
T d1eixa_          45 QFVRELQQRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHASG--G----ARMMTAAREALVPFGKDAPLLIAVTV  118 (231)
T ss_dssp             HHHHHHHHTTCCEEEEEEECSCHHHHHHHHHHHHHHTCSEEEEBGGG--C----HHHHHHHHHTTGGGGGGCCEEEEECS
T ss_pred             HHHHHHHhcCchhhHhhHhhcCcHHHHHHHHhhhcccceEEEEeccC--c----HHHHHHHHHhhhhcCccceEEEEEee
Confidence            34455555666777776532    1  45888889999988876543  2    566666654   4443322 233322


Q ss_pred             eecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHH---
Q 021156          194 RKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMA---  270 (316)
Q Consensus       194 k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~e---  270 (316)
                      ............+|..........++....+.|++.+.....         +...+++..  -.-.++++.||+...   
T Consensus       119 ~ts~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~~~~~--~~~~~~~tPGI~~~~~~~  187 (231)
T d1eixa_         119 LTSMEASDLVDLGMTLSPADYAERLAALTQKCGLDGVVCSAQ---------EAVRFKQVF--GQEFKLVTPGIRPQGSEA  187 (231)
T ss_dssp             CTTCCHHHHHTTTCCSCHHHHHHHHHHHHHHTTCSEEECCGG---------GHHHHHHHH--CSSSEEEECCBCCTTCCC
T ss_pred             ccccccchhcccccccchhHHHHHHHHHHHHhccccccccch---------hhhhhhhhc--CCccceecCCcccCCCCc
Confidence            210000011112333222222445677778888887653221         223333332  234688888886532   


Q ss_pred             -------HHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHH
Q 021156          271 -------DLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAW  306 (316)
Q Consensus       271 -------Di~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~  306 (316)
                             ...++++.|  ++-+||||++  |...=+.+.+.++
T Consensus       188 ~dq~r~~tp~~Ai~~G--aD~iIVGR~I--t~a~dP~~aa~~i  226 (231)
T d1eixa_         188 GDQRRIMTPEQALSAG--VDYMVIGRPV--TQSVDPAQTLKAI  226 (231)
T ss_dssp             TTCCSCBCHHHHHHTT--CSEEEECHHH--HTSSSHHHHHHHH
T ss_pred             cCccccCCHHHHHHcC--CCEEEECCcc--cCCCCHHHHHHHH
Confidence                   145667788  8999999999  8655344444444

>d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Hydroxyacid oxidase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.95  E-value=0.13  Score=45.93  Aligned_cols=69  Identities=19%  Similarity=0.160  Sum_probs=46.6

Q ss_pred             HHHHHHHcCCCcceEEEecCC-----cccHHHHHHHHHh--CCCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeeec
Q 021156           98 FANLYKEDGLTGGHAIMLGAD-----PLSKAAAIEALHA--YPGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        98 ~a~~~~~~G~~~l~lvDLda~-----~~~~~~i~~~v~~--~~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      -+....+.|++++.+-.-.+.     ......+.++...  -.+||++.||||. .|+-+++..||+.|-+|-.++.
T Consensus       230 da~~a~~~G~d~i~vsnhggr~~d~~~~~~~~l~~i~~~~~~~~~iiadGGIR~G~Dv~KALALGA~~V~igrp~L~  306 (349)
T d1tb3a1         230 DAELAMKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLGRPILW  306 (349)
T ss_dssp             HHHHHHHTTCSEEEECCGGGTSSCSBCCHHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSCEEESHHHHH
T ss_pred             HHHHHHHhhccceeeeccccccccccccchhhcceeeeccCCCeeEEeccCcCcHHHHHHHHHcCCCEEEEChHHHH
Confidence            455566788876555433221     2222233333332  3589999999996 9999999999999999886654

>d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.68  E-value=0.21  Score=40.22  Aligned_cols=67  Identities=16%  Similarity=0.203  Sum_probs=46.7

Q ss_pred             HHHHHHHHcCCCcceEEEecCCc-ccHHHHHHHHHh--CCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeec
Q 021156           97 EFANLYKEDGLTGGHAIMLGADP-LSKAAAIEALHA--YPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        97 e~a~~~~~~G~~~l~lvDLda~~-~~~~~i~~~v~~--~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      +.++...+.|++   ++-||.-. .......+.++.  -.+.+.+.|||+.+.+..|...|+|.+.+|+..+.
T Consensus        90 ~q~~~a~~~~~d---iImLDN~sp~~~k~~v~~~~~~~~~i~lEaSGgI~~~ni~~ya~~GvD~IS~galt~s  159 (169)
T d1qpoa1          90 EQLDAVLPEKPE---LILLDNFAVWQTQTAVQRRDSRAPTVMLESSGGLSLQTAATYAETGVDYLAVGALTHS  159 (169)
T ss_dssp             HHHHHHGGGCCS---EEEEETCCHHHHHHHHHHHHHHCTTCEEEEESSCCTTTHHHHHHTTCSEEECGGGTSS
T ss_pred             HHhhhhhhcCCc---EEEecCcChHhHHHHHHHhhccCCeeEEEEeCCCCHHHHHHHHHcCCCEEECCccccC
Confidence            456666667766   66677431 122222333332  34789999999999999999999999999987664

>d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Glycolate oxidase
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=90.65  E-value=0.24  Score=44.13  Aligned_cols=68  Identities=24%  Similarity=0.225  Sum_probs=45.8

Q ss_pred             HHHHHHHcCCCcceEEEecCC-----cccHHHHHHHHHhC--CCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeee
Q 021156           98 FANLYKEDGLTGGHAIMLGAD-----PLSKAAAIEALHAY--PGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVF  165 (316)
Q Consensus        98 ~a~~~~~~G~~~l~lvDLda~-----~~~~~~i~~~v~~~--~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~  165 (316)
                      -+....+.|++++.+-+..+.     ......+.++.+.+  .+||++.||||. -|+-+++..||+.|-+|-.++
T Consensus       237 da~~a~~~g~~~~~vsnhggr~ld~~~~~~~~l~~i~~~~~~~~~iiadGGIR~G~Di~KALaLGAd~vgigrp~L  312 (359)
T d1goxa_         237 DARLAVQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVV  312 (359)
T ss_dssp             HHHHHHHTTCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTTTSSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHH
T ss_pred             HHHHHHHccccceecccccccccccccchhhhchhhhhccCCccceeeccCcCcHHHHHHHHHcCCCEEEEcHHHH
Confidence            344445667776555444321     22333444444433  489999999996 999999999999999986554

>d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Aquifex aeolicus [TaxId: 63363]

Probab=90.60  E-value=0.42  Score=40.12  Aligned_cols=42  Identities=19%  Similarity=0.321  Sum_probs=33.8

Q ss_pred             CCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHh
Q 021156          133 PGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVV  182 (316)
Q Consensus       133 ~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~  182 (316)
                      .+++-+.|||| .+++.+++++||+|+  ||...      ++.++++.++.
T Consensus       175 ~~~iKasGGIrt~~~a~~~i~~Ga~Ri--GtSs~------~~i~~e~~~~~  217 (225)
T d1mzha_         175 RIKVKASGGIRDLETAISMIEAGADRI--GTSSG------ISIAEEFLKRH  217 (225)
T ss_dssp             SSEEEEESSCCSHHHHHHHHHTTCSEE--EESCH------HHHHHHHHHHH
T ss_pred             CceEECcCCCCCHHHHHHHHHhchhhe--ecCcH------HHHHHHHHhcc
Confidence            47899999999 599999999999985  55432      67788887654

>d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: DNA-binding response regulator MicA, N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=90.54  E-value=1.5  Score=31.98  Aligned_cols=80  Identities=16%  Similarity=0.111  Sum_probs=58.6

Q ss_pred             HHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhcc
Q 021156          216 DERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFG  295 (316)
Q Consensus       216 ~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~  295 (316)
                      .+....+.+...+- ++.|+.-.+. .|  +++++++++..++|+|+-.+-.+.++..++++.|  +++      +  ..
T Consensus        34 ~eal~~~~~~~~dl-illD~~mp~~-~G--~~~~~~i~~~~~~pvI~lt~~~~~~~~~~a~~~G--a~d------~--l~   99 (117)
T d2a9pa1          34 REALEQFEAEQPDI-IILDLMLPEI-DG--LEVAKTIRKTSSVPILMLSAKDSEFDKVIGLELG--ADD------Y--VT   99 (117)
T ss_dssp             HHHHHHHHHHCCSE-EEECSSCSSS-CH--HHHHHHHHTTCCCCEEEEESCCSHHHHHHHHHHT--CSE------E--EE
T ss_pred             HHHHHHHHhcCCCE-EEeccccCCC-Cc--cHHHHHHHhCCCCCEEEEecCCCHHHHHHHHHcC--CCE------E--EE
Confidence            34455555666774 4577754332 22  7899999888889999999999999999999999  543      3  56


Q ss_pred             CcccHHHHHHHHHh
Q 021156          296 GNLAYKDVVAWHAQ  309 (316)
Q Consensus       296 g~~~~~~~~~~~~~  309 (316)
                      .|++.+++.+..++
T Consensus       100 KP~~~~~L~~~i~~  113 (117)
T d2a9pa1         100 KPFSNRELQARVKA  113 (117)
T ss_dssp             SSCCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHH
Confidence            78888888776554

>d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.53  E-value=0.42  Score=38.27  Aligned_cols=69  Identities=14%  Similarity=0.159  Sum_probs=49.3

Q ss_pred             HHHHHHHHHcCCCEEEEeecCCccccCCCCH-HHHHHHhhc-CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhh
Q 021156          216 DERVLDFLASYADEFLVHGVDVEGKKLGIDD-ELVALLGKY-SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDI  293 (316)
Q Consensus       216 ~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~-eli~~l~~~-~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~  293 (316)
                      .+.++++.+.|++.+++-..+.+      +. +.++.+.+. ..+.+.+|||| +.+.+.++.+.|  +|.+.+|+..  
T Consensus        89 ~~q~~~a~~~~~diImLDN~sp~------~~k~~v~~~~~~~~~i~lEaSGgI-~~~ni~~ya~~G--vD~IS~galt--  157 (169)
T d1qpoa1          89 LEQLDAVLPEKPELILLDNFAVW------QTQTAVQRRDSRAPTVMLESSGGL-SLQTAATYAETG--VDYLAVGALT--  157 (169)
T ss_dssp             HHHHHHHGGGCCSEEEEETCCHH------HHHHHHHHHHHHCTTCEEEEESSC-CTTTHHHHHHTT--CSEEECGGGT--
T ss_pred             HHHhhhhhhcCCcEEEecCcChH------hHHHHHHHhhccCCeeEEEEeCCC-CHHHHHHHHHcC--CCEEECCccc--
Confidence            46788899999998875444322      11 234444333 35778999999 668999999998  9999999776  


Q ss_pred             cc
Q 021156          294 FG  295 (316)
Q Consensus       294 ~~  295 (316)
                      |.
T Consensus       158 ~s  159 (169)
T d1qpoa1         158 HS  159 (169)
T ss_dssp             SS
T ss_pred             cC
Confidence            64

>d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Membrane-associated (S)-mandelate dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=90.40  E-value=0.14  Score=45.46  Aligned_cols=68  Identities=12%  Similarity=0.103  Sum_probs=46.8

Q ss_pred             HHHHHHHcCCCcceEEEecC-----CcccHHHHHHHHHhCCCcEEEecCCCH-HHHHHHHHcCCCEEEeCCeee
Q 021156           98 FANLYKEDGLTGGHAIMLGA-----DPLSKAAAIEALHAYPGGLQVGGGINS-DNSLSYIEEGATHVIVTSYVF  165 (316)
Q Consensus        98 ~a~~~~~~G~~~l~lvDLda-----~~~~~~~i~~~v~~~~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~~  165 (316)
                      -+....+.|++++.+-+-.+     .......+.++....+.||++.||||. -|+-+++..|||.|-+|-.++
T Consensus       235 ~~~~a~~~g~~~~~~s~~gg~~~~~~~~~~~~l~~i~~~~~~~viasGGIR~G~Dv~KALaLGAd~vgigrp~L  308 (353)
T d1p4ca_         235 DADRCIAEGADGVILSNHGGRQLDCAISPMEVLAQSVAKTGKPVLIDSGFRRGSDIVKALALGAEAVLLGRATL  308 (353)
T ss_dssp             HHHHHHHTTCSEEEECCGGGTSCTTCCCGGGTHHHHHHHHCSCEEECSSCCSHHHHHHHHHTTCSCEEESHHHH
T ss_pred             hHHHHHhcCCchhhhcccccccccccccchhcccchhcccccceeecCCcCchHHHHHHHHcCCCEEEEcHHHH
Confidence            45555667787765554322     222222233444456789999999996 999999999999999987655

>d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=90.09  E-value=0.13  Score=46.56  Aligned_cols=46  Identities=22%  Similarity=0.258  Sum_probs=36.9

Q ss_pred             HHHHHHHHH---hCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecC
Q 021156          122 KAAAIEALH---AYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNN  167 (316)
Q Consensus       122 ~~~i~~~v~---~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~  167 (316)
                      ...+.++..   ..++|++.+|||+ +.|+-++|.+|||.|.+|+.+-..
T Consensus       202 ~sAi~e~~~~~~~~~~~iiADGGi~~~Gdi~KAla~GAd~VMlG~~lAg~  251 (368)
T d2cu0a1         202 ITAVAMVADRAQEYGLYVIADGGIRYSGDIVKAIAAGADAVMLGNLLAGT  251 (368)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTB
T ss_pred             HHHHHHHHHHHhccCCeeEecCCCCcCChhheeeeeccceeeccchhccc
Confidence            444555542   4679999999999 699999999999999999986543

>d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.97  E-value=0.11  Score=41.98  Aligned_cols=69  Identities=19%  Similarity=0.111  Sum_probs=48.8

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCc-ccHHHHHHHHHh--CCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeec
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADP-LSKAAAIEALHA--YPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~-~~~~~i~~~v~~--~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~  166 (316)
                      ++ +.+....+.|++   ++-||.-. .....+.+.++.  -.+.+.+.|||+.+.+..|...|+|.+.+|+..+.
T Consensus        87 ~~-~e~~~a~~~g~d---~i~LDn~~pe~~k~~~~~lk~~~~~i~lEaSGGI~~~ni~~~a~~GVD~Is~g~lt~~  158 (170)
T d1o4ua1          87 NL-EDALRAVEAGAD---IVMLDNLSPEEVKDISRRIKDINPNVIVEVSGGITEENVSLYDFETVDVISSSRLTLQ  158 (170)
T ss_dssp             SH-HHHHHHHHTTCS---EEEEESCCHHHHHHHHHHHHHHCTTSEEEEEECCCTTTGGGGCCTTCCEEEEGGGTSS
T ss_pred             cH-HHHHHHHhcCcc---EEEEcCcChhhHhHHHHHHHhhCCcEEEEEECCCCHHHHHHHHHcCCCEEEcCccccC
Confidence            44 456667778877   67787532 122223334443  34789999999999999999999999999987664

>d1o5xa_ c.1.1.1 (A:) Triosephosphate isomerase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Plasmodium falciparum [TaxId: 5833]

Probab=89.93  E-value=1.2  Score=37.53  Aligned_cols=142  Identities=15%  Similarity=0.133  Sum_probs=82.2

Q ss_pred             HHHHHHHcCCCEEEeCCeeecC--CCCCHHHHHHHHHHhcC-ceEEEeeeeeecCCeeEEEeCCcceecccCHHHHH-HH
Q 021156          146 NSLSYIEEGATHVIVTSYVFNN--GQMDLERLKDLVRVVGK-QRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERV-LD  221 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~~~~~--~~~~~eli~ei~~~~G~-~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a-~~  221 (316)
                      .++.+.+.||+.|+||=.-++.  ++.|...-+++...... =..++++.=...           ....+ ...+.. .+
T Consensus        77 Sa~mLkd~G~~~viiGHSERR~~~~Etd~~i~~K~~~al~~~l~pI~CiGE~~~-----------~~~~~-~~~~~~~~Q  144 (246)
T d1o5xa_          77 SAEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKNNLKAVVCFGESLE-----------QREQN-KTIEVITKQ  144 (246)
T ss_dssp             CHHHHHHTTCCEEEECCHHHHHHSCCCHHHHHHHHHHHHHTTCEEEEEECCCHH-----------HHHTT-CHHHHHHHH
T ss_pred             cHHHHhhcccceeeeccccchhhhccchHHHHHHHHHHHHcccceEEEEecccc-----------cccch-hhHHHHHHH
Confidence            3777889999999999654432  44444455555544411 134455531100           00011 122222 22


Q ss_pred             HHHc-----CCCEEE--EeecCCccccCCCCHHHHHHH----hh----cC------CCcEEEEeCCCCHHHHHHHHHhCC
Q 021156          222 FLAS-----YADEFL--VHGVDVEGKKLGIDDELVALL----GK----YS------PIPVTYAGGVTTMADLEKIKVAGI  280 (316)
Q Consensus       222 ~~~~-----Ga~~il--vtdi~~dG~~~G~d~eli~~l----~~----~~------~iPVIasGGI~s~eDi~~l~~~G~  280 (316)
                      +...     ..+.++  |=.+.+-||..-++.+.+.++    ++    ..      ++||+|+|-|.. +.+.++++.. 
T Consensus       145 l~~~l~~~~~~~~iiIAYEPvWAIGTG~~as~~~i~e~~~~Ir~~l~~~~~~~~~~~i~ilYGGSV~~-~N~~~i~~~~-  222 (246)
T d1o5xa_         145 VKAFVDLIDNFDNVILVYEPLWAIGTGKTATPEQAQLVHKEIRKIVKDTCGEKQANQIRILYGGSVNT-ENCSSLIQQE-  222 (246)
T ss_dssp             HHTTGGGCCCTTSEEEEECCGGGSSSSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHSEEEECSCCCT-TTHHHHHTST-
T ss_pred             HHhhhhhhcccccEEEEecccccccCCCCcccchhhhhhhHHHHHHHHHhhHhhcCcccEEEeCCCCH-hHHHHHhcCC-
Confidence            2211     123333  678899999888876554432    21    11      589999998876 6688888765 


Q ss_pred             CcCEEEEccchhhccCcccHHHHHH
Q 021156          281 GRVDVTVGSALDIFGGNLAYKDVVA  305 (316)
Q Consensus       281 g~~gVivG~Al~~~~g~~~~~~~~~  305 (316)
                      ++||+.||+|-  .. + .|-++.+
T Consensus       223 ~idG~LVG~AS--L~-~-~F~~Ii~  243 (246)
T d1o5xa_         223 DIDGFLVGNAS--LK-E-SFVDIIK  243 (246)
T ss_dssp             TCCEEEECGGG--GS-T-THHHHHH
T ss_pred             CCCEEEeeccc--CC-H-HHHHHHH
Confidence            59999999998  75 3 5655543

>d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Bacillus anthracis [TaxId: 1392]

Probab=89.79  E-value=0.75  Score=39.21  Aligned_cols=124  Identities=11%  Similarity=0.093  Sum_probs=73.0

Q ss_pred             cEEEecCCCH----HHHHHHHHcCCCEEEeC-CeeecCCCCCH----HHHHHHHHHhcC-ceEEEeeeeeecCCeeEEEe
Q 021156          135 GLQVGGGINS----DNSLSYIEEGATHVIVT-SYVFNNGQMDL----ERLKDLVRVVGK-QRLVLDLSCRKKDGKYAIVT  204 (316)
Q Consensus       135 pl~vGGGIr~----e~~~~~l~~Gad~VVig-t~~~~~~~~~~----eli~ei~~~~G~-~~IvvslD~k~~~g~~~v~~  204 (316)
                      |+.-.|-|..    +.++.+++.|++-++++ |+.+- ..+..    ++++.+++..+. -.+++.+..-          
T Consensus        14 Pf~~d~~iD~~~~~~~i~~l~~~Gv~gl~~~G~tGE~-~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~----------   82 (292)
T d1xkya1          14 PFDINGNIDFAKTTKLVNYLIDNGTTAIVVGGTTGES-PTLTSEEKVALYRHVVSVVDKRVPVIAGTGSN----------   82 (292)
T ss_dssp             CBCTTSSBCHHHHHHHHHHHHHTTCCEEEESSTTTTG-GGSCHHHHHHHHHHHHHHHTTSSCEEEECCCS----------
T ss_pred             CcCCCcCcCHHHHHHHHHHHHHCCCCEEEECeEccch-hhCCHHHHHHHHHHHHHHhCCCceEEEecCcc----------
Confidence            3444555651    34777889999988885 43221 11222    445555555532 2344444321          


Q ss_pred             CCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCC----HHHHHHHhhcCCCcEEE------EeCCCCHHHHHH
Q 021156          205 DRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGID----DELVALLGKYSPIPVTY------AGGVTTMADLEK  274 (316)
Q Consensus       205 ~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d----~eli~~l~~~~~iPVIa------sGGI~s~eDi~~  274 (316)
                            +..+.++.++.+.+.|++.+++..--    +..++    ++.++.+++.+++|+++      .|---+.+.+.+
T Consensus        83 ------s~~~~i~~a~~a~~~Gad~ilv~pP~----~~~~s~~~i~~~~~~v~~~~~~pi~iYn~P~~~~~~~~~~~~~~  152 (292)
T d1xkya1          83 ------NTHASIDLTKKATEVGVDAVMLVAPY----YNKPSQEGMYQHFKAIAESTPLPVMLYNVPGRSIVQISVDTVVR  152 (292)
T ss_dssp             ------CHHHHHHHHHHHHHTTCSEEEEECCC----SSCCCHHHHHHHHHHHHHTCSSCEEEEECHHHHSSCCCHHHHHH
T ss_pred             ------cHHHHHHHHHHHHHcCCCEEEECCCC----CCCCCHHHHHHHHHHHhccCCCcEEEEeCCcccCCccCHHHHhh
Confidence                  11256789999999999998875421    11222    34566777788899876      355577888887


Q ss_pred             HHHhC
Q 021156          275 IKVAG  279 (316)
Q Consensus       275 l~~~G  279 (316)
                      +.+..
T Consensus       153 l~~~p  157 (292)
T d1xkya1         153 LSEIE  157 (292)
T ss_dssp             HHTST
T ss_pred             hccCC
Confidence            76643

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=89.77  E-value=3.5  Score=33.73  Aligned_cols=155  Identities=12%  Similarity=0.070  Sum_probs=92.1

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCc-ccHHHHHHHHHhCCCcEEEecCCC-H-HHHHHHH----HcCCCEEEeCCeeec
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADP-LSKAAAIEALHAYPGGLQVGGGIN-S-DNSLSYI----EEGATHVIVTSYVFN  166 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~-~~~~~i~~~v~~~~~pl~vGGGIr-~-e~~~~~l----~~Gad~VVigt~~~~  166 (316)
                      ....+|..+.+.| ..+-++-.|.-. .-.+.+....+..++|+.+.-.-. . +-+++..    ..++|.|+|+|+-+.
T Consensus        25 TiAKLA~~~~~~g-~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d~~~~l~~~~~~a~~~~~d~ilIDTaGr~  103 (211)
T d2qy9a2          25 TIGKLARQFEQQG-KSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRL  103 (211)
T ss_dssp             HHHHHHHHHHTTT-CCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCHHHHHHHHHHHHHHTTCSEEEECCCCCG
T ss_pred             HHHHHHHHHHHCC-CcEEEEecccccccchhhhhhhhhhcCCcccccccCCCHHHHHHHHHHHHHHcCCCEEEeccCCCc
Confidence            4567888887777 457777776432 224445555566889988655443 3 2233333    458999999998753


Q ss_pred             CCCCCHHHHHHHHHH---hc------CceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCC
Q 021156          167 NGQMDLERLKDLVRV---VG------KQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDV  237 (316)
Q Consensus       167 ~~~~~~eli~ei~~~---~G------~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~  237 (316)
                      .  .+.++++|+.+.   ..      +..+++.+|.-  .+             .....+....+...+++.+++|-+|.
T Consensus       104 ~--~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~--~~-------------~~~~~~~~~~~~~~~~~~lIlTKlDe  166 (211)
T d2qy9a2         104 Q--NKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDAS--TG-------------QNAVSQAKLFHEAVGLTGITLTKLDG  166 (211)
T ss_dssp             G--GHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGG--GT-------------HHHHHHHHHHHHHSCCCEEEEECCTT
T ss_pred             c--ccHHHHHHHHHHHHHHhhhcccCcceeeeehhcc--cC-------------cchHHHHhhhhhccCCceEEEeecCC
Confidence            2  124555555433   21      23556666653  11             11355677788889999999999987


Q ss_pred             ccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHH
Q 021156          238 EGKKLGIDDELVALLGKYSPIPVTYAGGVTTMAD  271 (316)
Q Consensus       238 dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eD  271 (316)
                      ...+ |.   ++ .+...+++||.+-|.=...+|
T Consensus       167 ~~~~-G~---~l-~~~~~~~~Pi~~i~~Gq~v~D  195 (211)
T d2qy9a2         167 TAKG-GV---IF-SVADQFGIPIRYIGVGERIED  195 (211)
T ss_dssp             CTTT-TH---HH-HHHHHHCCCEEEEECSSSGGG
T ss_pred             CCCc-cH---HH-HHHHHHCCCEEEEeCCCCccc
Confidence            6443 32   22 223345788866664444444

>d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 12-oxophytodienoate reductase (OPR, OYE homolog)
species: Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]

Probab=89.75  E-value=0.16  Score=45.61  Aligned_cols=48  Identities=23%  Similarity=0.272  Sum_probs=41.4

Q ss_pred             HHhCCCcEEEecCCCHHHHHHHHHcC-CCEEEeCCeeecCCCCCHHHHHHHHH
Q 021156          129 LHAYPGGLQVGGGINSDNSLSYIEEG-ATHVIVTSYVFNNGQMDLERLKDLVR  180 (316)
Q Consensus       129 v~~~~~pl~vGGGIr~e~~~~~l~~G-ad~VVigt~~~~~~~~~~eli~ei~~  180 (316)
                      .+.+..|++++||++.+++++++..| ||.|-+|-.++.|    |++.+++.+
T Consensus       288 ~~~~~~~vi~~g~~~~~~ae~~l~~g~aD~V~~gR~~iad----Pd~~~k~~~  336 (364)
T d1icpa_         288 RKAYKGTFIVAGGYDREDGNRALIEDRADLVAYGRLFISN----PDLPKRFEL  336 (364)
T ss_dssp             HHHCCSCEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHC----TTHHHHHHH
T ss_pred             HHhcCCCEEEECCCCHHHHHHHHHcCCCceehhHHHHHHC----ccHHHHHHc
Confidence            34578999999999888888888765 9999999999998    999998876

>d2btma_ c.1.1.1 (A:) Triosephosphate isomerase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=89.18  E-value=1  Score=38.07  Aligned_cols=136  Identities=13%  Similarity=0.075  Sum_probs=76.8

Q ss_pred             HHHHHHHcCCCEEEeCCeeecC--CCCCHHHHHHHHHHhcC-ceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH
Q 021156          146 NSLSYIEEGATHVIVTSYVFNN--GQMDLERLKDLVRVVGK-QRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF  222 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~~~~~--~~~~~eli~ei~~~~G~-~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~  222 (316)
                      .++.+.+.||+.|+||=.-++.  ++.|...-+++....-. =..++++.=...     -+-.+-   +.--+.......
T Consensus        78 Sa~mlkd~g~~yviiGHSErR~~~~E~~~~i~~K~~~~~~~~l~pI~CiGE~~~-----e~~~~~---~~~~~~~ql~~~  149 (251)
T d2btma_          78 SPVMLKDLGVTYVILGHSERRQMFAETDETVNKKVLAAFTRGLIPIICCGESLE-----EREAGQ---TNAVVASQVEKA  149 (251)
T ss_dssp             CHHHHHHHTCCEEEESCHHHHHHSCCCHHHHHHHHHHHHHHTCEEEEEECCCHH-----HHHTTC---HHHHHHHHHHHH
T ss_pred             CHHHHHHhCcceeeecchhhhhhhcchHHHHHHHHHHhhcCCCeEEEEeccccc-----ccccch---hhhHHHHHHHhh
Confidence            4777889999999999654432  34334444444443311 134566642100     000000   000111222222


Q ss_pred             HHc-C---CC--EEEEeecCCccccCCCCHHHHHHH----hhc----------CCCcEEEEeCCCCHHHHHHHHHhCCCc
Q 021156          223 LAS-Y---AD--EFLVHGVDVEGKKLGIDDELVALL----GKY----------SPIPVTYAGGVTTMADLEKIKVAGIGR  282 (316)
Q Consensus       223 ~~~-G---a~--~ilvtdi~~dG~~~G~d~eli~~l----~~~----------~~iPVIasGGI~s~eDi~~l~~~G~g~  282 (316)
                      ... .   .+  -|-|=.+.+=||..-++.+.+.++    ++.          -++||+|+|-|.. +.+.++++.. ++
T Consensus       150 ~~~~~~~~~~~iiIAYEPvWAIGTG~~a~~~~i~e~~~~Ir~~l~~~~~~~~~~~i~ilYGGSV~~-~N~~~i~~~~-~v  227 (251)
T d2btma_         150 LAGLTPEQVKQAVIAYEPIWAIGTGKSSTPEDANSVCGHIRSVVSRLFGPEAAEAIRIQYGGSVKP-DNIRDFLAQQ-QI  227 (251)
T ss_dssp             HTTCCHHHHTTCEEEECCGGGTTTSCCCCHHHHHHHHHHHHHHHHHHHCHHHHTTSEEEEESSCCT-TTHHHHHTST-TC
T ss_pred             hcccchhccceEEEEeccccccccccCCChhhhhhhHHHHHHHHHhhcchhhcccCcEEeeCCCCH-hHHHHHhcCC-CC
Confidence            211 1   11  234788999999988876654433    221          2579999998876 6788888876 69


Q ss_pred             CEEEEccch
Q 021156          283 VDVTVGSAL  291 (316)
Q Consensus       283 ~gVivG~Al  291 (316)
                      ||+.||+|-
T Consensus       228 DG~LVG~AS  236 (251)
T d2btma_         228 DGALVGGAS  236 (251)
T ss_dssp             CEEEESGGG
T ss_pred             CEEEechHh
Confidence            999999998

>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sporulation response regulator Spo0F
species: Bacillus subtilis [TaxId: 1423]

Probab=88.23  E-value=2.8  Score=30.56  Aligned_cols=81  Identities=10%  Similarity=0.074  Sum_probs=58.6

Q ss_pred             HHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhh-cCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhcc
Q 021156          217 ERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGK-YSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFG  295 (316)
Q Consensus       217 e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~-~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~  295 (316)
                      +....+.+.-.+ +++.|+.--|+ .  -+++++++++ ..++|+|+--+-.+.++..++++.|  +++      +  ..
T Consensus        36 eal~~~~~~~~d-lillD~~mP~~-~--G~el~~~lr~~~~~~pvi~lt~~~~~~~~~~a~~~G--a~~------y--l~  101 (119)
T d1peya_          36 QALDIVTKERPD-LVLLDMKIPGM-D--GIEILKRMKVIDENIRVIIMTAYGELDMIQESKELG--ALT------H--FA  101 (119)
T ss_dssp             HHHHHHHHHCCS-EEEEESCCTTC-C--HHHHHHHHHHHCTTCEEEEEESSCCHHHHHHHHHTT--CCE------E--EE
T ss_pred             HHHHHHHhCCCC-EEEEeccCCCC-C--HHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHCC--CCE------E--EE
Confidence            444455555566 45578765432 2  3688888875 3579999999999999999999998  543      4  56


Q ss_pred             CcccHHHHHHHHHhhc
Q 021156          296 GNLAYKDVVAWHAQQE  311 (316)
Q Consensus       296 g~~~~~~~~~~~~~~~  311 (316)
                      .|++.+++.+.+++..
T Consensus       102 KP~~~~~L~~~v~~~L  117 (119)
T d1peya_         102 KPFDIDEIRDAVKKYL  117 (119)
T ss_dssp             SSCCHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHC
Confidence            7889999888776643

>d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=87.82  E-value=1.1  Score=37.55  Aligned_cols=125  Identities=21%  Similarity=0.138  Sum_probs=69.0

Q ss_pred             HHHHHHHHcCCCE--EEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH
Q 021156          145 DNSLSYIEEGATH--VIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF  222 (316)
Q Consensus       145 e~~~~~l~~Gad~--VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~  222 (316)
                      .+++.+++.||+-  +|++-...+++  ..+.+.++++.......    -+|      .+.-.+..  +.-.....++..
T Consensus        92 ~E~~~Ai~~GAdEID~Vin~~~~~~~--~~~ev~~~~~~~~~~g~----~lK------VIlEt~~L--~~~~i~~a~~~a  157 (234)
T d1n7ka_          92 VEAQTVLEAGATELDVVPHLSLGPEA--VYREVSGIVKLAKSYGA----VVK------VILEAPLW--DDKTLSLLVDSS  157 (234)
T ss_dssp             HHHHHHHHHTCCEEEECCCGGGCHHH--HHHHHHHHHHHHHHTTC----EEE------EECCGGGS--CHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCeEEEEechhhhhhh--hHHHHHHHHHHHhccCc----eEE------EEEecccc--chHHHHHHHHHH
Confidence            6688999999996  44444333321  12334444433211111    111      11111111  111345566777


Q ss_pred             HHcCCCEEEEeecCCcccc-CCCCHHHH---HHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          223 LASYADEFLVHGVDVEGKK-LGIDDELV---ALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       223 ~~~Ga~~ilvtdi~~dG~~-~G~d~eli---~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      .+.|++.|= |+   .|.. .|-..+.+   .+...-.+++|=++|||+|.+|..+++++|  ++  -||++-
T Consensus       158 ~~aGadFVK-TS---TG~~~~gat~~~~~~l~~~~~~~~vgIKasGGIrt~~~a~~~i~aG--a~--rIGtSs  222 (234)
T d1n7ka_         158 RRAGADIVK-TS---TGVYTKGGDPVTVFRLASLAKPLGMGVKASGGIRSGIDAVLAVGAG--AD--IIGTSS  222 (234)
T ss_dssp             HHTTCSEEE-SC---CSSSCCCCSHHHHHHHHHHHGGGTCEEEEESSCCSHHHHHHHHHTT--CS--EEEETT
T ss_pred             HHhhhhhee-ec---ccccCCCCCHHHHHHHHHHhcCCCCcEEeeCCcCCHHHHHHHHHcc--Cc--eeecch
Confidence            889999653 33   3432 23333333   333333468899999999999999999998  66  366554

>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Cobalamin (vitamin B12)-binding domain
family: Cobalamin (vitamin B12)-binding domain
domain: Methylmalonyl-CoA mutase alpha subunit, C-terminal domain
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=87.58  E-value=1.3  Score=35.15  Aligned_cols=68  Identities=19%  Similarity=0.103  Sum_probs=47.4

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCCc-ccHHHHHHHHHhC---CCcEEEecCCCHHHHHHHHHcCCCEEEeC
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGADP-LSKAAAIEALHAY---PGGLQVGGGINSDNSLSYIEEGATHVIVT  161 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~~-~~~~~i~~~v~~~---~~pl~vGGGIr~e~~~~~l~~Gad~VVig  161 (316)
                      ..|.++++...+.+++-+-+=-+++.. ..-+.+.+.+++.   ++|+.+||-|-.+|...+.++|++.| .|
T Consensus        75 ~~~e~iv~aa~~~~advI~iSs~~~~~~~~~~~l~~~L~~~g~~~v~VivGG~ip~~d~~~l~~~Gv~~i-F~  146 (168)
T d7reqa2          75 QTPEETARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILITVGGVIPEQDFDELRKDGAVEI-YT  146 (168)
T ss_dssp             BCHHHHHHHHHHHTCSEEEEEECSSCHHHHHHHHHHHHHHTTCTTSEEEEEESCCGGGHHHHHHHTEEEE-EC
T ss_pred             CcHHHHHHHHHccCCCEEEEecCcccchHHHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHhCCCCEE-EC
Confidence            468899998888887755555555442 3344555666543   47888777666788899999999974 44

>d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Hypothetical protein HI0047
species: Haemophilus influenzae [TaxId: 727]

Probab=87.55  E-value=2.7  Score=34.49  Aligned_cols=60  Identities=15%  Similarity=0.004  Sum_probs=47.1

Q ss_pred             CHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhC
Q 021156          214 YLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAG  279 (316)
Q Consensus       214 ~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G  279 (316)
                      +..+.++.+.+.|++.+=+|-.+..      -++.++.+++..+-=++..|.|.+.++++++.++|
T Consensus        27 ~~~~~~~al~~~Gi~~iEitl~~~~------a~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~aG   86 (212)
T d1vhca_          27 DILPLADTLAKNGLSVAEITFRSEA------AADAIRLLRANRPDFLIAAGTVLTAEQVVLAKSSG   86 (212)
T ss_dssp             GHHHHHHHHHHTTCCEEEEETTSTT------HHHHHHHHHHHCTTCEEEEESCCSHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCCEEEEeCCChh------HHHHHHHHHhcCCCceEeeeecccHHHHHHHHhhC
Confidence            5788999999999997755554321      35788888765433579999999999999999999

>d1n55a_ c.1.1.1 (A:) Triosephosphate isomerase {Leishmania mexicana [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Leishmania mexicana [TaxId: 5665]

Probab=87.40  E-value=0.96  Score=38.28  Aligned_cols=142  Identities=13%  Similarity=0.100  Sum_probs=81.8

Q ss_pred             HHHHHHHcCCCEEEeCCeeecC--CCCCHHHHHHHHHHhcC-ceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH
Q 021156          146 NSLSYIEEGATHVIVTSYVFNN--GQMDLERLKDLVRVVGK-QRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF  222 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~~~~~--~~~~~eli~ei~~~~G~-~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~  222 (316)
                      .+..+.+.||+.|+||=.-++.  ++.|...-+++....-. =..++++.=..     .-+-.+..      .....+++
T Consensus        78 Sa~mL~d~g~~yviiGHSERR~~~~Etd~~v~~K~~~al~~~l~pI~CiGE~~-----~~~~~~~~------~~~l~~ql  146 (249)
T d1n55a_          78 SMPILKDIGVHWVILGHSERRTYYGETDEIVAQKVSEACKQGFMVIACIGETL-----QQREANQT------AKVVLSQT  146 (249)
T ss_dssp             BHHHHHHHTCCEEEESCHHHHHHSCCCHHHHHHHHHHHHHTTCEEEEEECCCH-----HHHHTTCH------HHHHHHHH
T ss_pred             cHHHHHHhccceeeeccchhhhhhcccHHHHHHHHHHHHHcCCceEEEecccc-----cccccccc------eeeehhhh
Confidence            3778889999999999654432  44444455555544411 24556654210     00001111      11112222


Q ss_pred             HH--cCC-----CEEE--EeecCCccccCCCCHHHHHH----Hhhc----C------CCcEEEEeCCCCHHHHHHHHHhC
Q 021156          223 LA--SYA-----DEFL--VHGVDVEGKKLGIDDELVAL----LGKY----S------PIPVTYAGGVTTMADLEKIKVAG  279 (316)
Q Consensus       223 ~~--~Ga-----~~il--vtdi~~dG~~~G~d~eli~~----l~~~----~------~iPVIasGGI~s~eDi~~l~~~G  279 (316)
                      ..  .+.     ..++  |=.+.+=||..-++.+.+.+    +++.    .      ++||+|+|.|.. +.+.+++...
T Consensus       147 ~~~l~~~~~~~~~~iiIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~~i~ilYGGSV~~-~N~~~i~~~~  225 (249)
T d1n55a_         147 SAIAAKLTKDAWNQVVLAYEPVWAIGTGKVATPEQAQEVHLLLRKWVSENIGTDVAAKLRILYGGSVNA-ANAATLYAKP  225 (249)
T ss_dssp             HHHHTTCCGGGGGGEEEEECCGGGSSSSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHCEEEEESSCCT-TTHHHHHTST
T ss_pred             hhhhcccccccccceEEEecceecccCCcccChHHHHHHHHHHHHHHHhhcchhhcCcccEEEcCCCCH-hHHHHHhcCC
Confidence            11  122     2333  67889999988877664443    2221    1      489999999876 6688888775


Q ss_pred             CCcCEEEEccchhhccCcccHHHHH
Q 021156          280 IGRVDVTVGSALDIFGGNLAYKDVV  304 (316)
Q Consensus       280 ~g~~gVivG~Al~~~~g~~~~~~~~  304 (316)
                       +++|+.||+|-  +. . .|.++.
T Consensus       226 -~vdG~LVG~AS--l~-~-~F~~Ii  245 (249)
T d1n55a_         226 -DINGFLVGGAS--LK-P-EFRDII  245 (249)
T ss_dssp             -TCCEEEESGGG--GS-T-THHHHH
T ss_pred             -CCCeEEeehhh--cC-H-HHHHHH
Confidence             69999999999  75 3 465554

>d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: PdxS-like
domain: Pyridoxal biosynthesis lyase PdxS
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.25  E-value=0.97  Score=38.10  Aligned_cols=47  Identities=21%  Similarity=0.236  Sum_probs=39.3

Q ss_pred             cHHHHHHHHH--hCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecC
Q 021156          121 SKAAAIEALH--AYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNN  167 (316)
Q Consensus       121 ~~~~i~~~v~--~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~  167 (316)
                      ..+..++..+  +.++|+.++|||- ..|+-...+.|||-|.+||..++.
T Consensus       175 p~~l~~~v~~~g~l~v~~~~~~Gi~tpadaa~~MelG~dgV~v~s~I~~s  224 (254)
T d1znna1         175 PVEVLREIKRLGRLPVVNFAAGGVTTPADAALMMHLGADGVFVGSGIFKS  224 (254)
T ss_dssp             CHHHHHHHHHHTSCSSEEEEESSCCSHHHHHHHHHTTCSEEEECGGGGGS
T ss_pred             chHHHHHHHHhCCCCceEEecCCCCChhhHHHHHHcCCCEEEEcchhhcC
Confidence            3455555554  5889999999997 599999999999999999999875

>d1vr6a1 c.1.10.4 (A:1-338) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I DAHP synthetase
domain: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG)
species: Thermotoga maritima [TaxId: 2336]

Probab=87.20  E-value=4.7  Score=35.41  Aligned_cols=191  Identities=16%  Similarity=0.121  Sum_probs=118.8

Q ss_pred             eecCCccCHHHHHHHHHHcCCCcceEEEecCC----------c-cc--HHHHHHHH-HhCCCcEEEecCCC-HHHHHHHH
Q 021156           87 TNFESDKSAAEFANLYKEDGLTGGHAIMLGAD----------P-LS--KAAAIEAL-HAYPGGLQVGGGIN-SDNSLSYI  151 (316)
Q Consensus        87 ~~~~~~~~p~e~a~~~~~~G~~~l~lvDLda~----------~-~~--~~~i~~~v-~~~~~pl~vGGGIr-~e~~~~~l  151 (316)
                      ...++.....++|+.+.+.|++.+    ..+.          . ..  -..+.+.+ ++.++|+...  |. .++++.+.
T Consensus       102 C~vES~e~~~~~A~~lke~g~~~~----r~g~fKpRtsp~sf~g~g~~gL~~l~~~k~~~glpvvTd--V~~~~~~~~~~  175 (338)
T d1vr6a1         102 CSVEGREMLMETAHFLSELGVKVL----RGGAYKPRTSPYSFQGLGEKGLEYLREAADKYGMYVVTE--ALGEDDLPKVA  175 (338)
T ss_dssp             SBCCCHHHHHHHHHHHHHTTCCEE----ECBSCCCCCSTTSCCCCTHHHHHHHHHHHHHHTCEEEEE--CSSGGGHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCcccc----ccceecccccccccccchHHHHHHHHHHHhhcCceeEEe--ccchhhhhhhh
Confidence            334444557789999988876521    1111          0 11  11233333 3578999876  65 57788877


Q ss_pred             HcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEE
Q 021156          152 EEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFL  231 (316)
Q Consensus       152 ~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~il  231 (316)
                      +. +|.+=||+...+|    .++++++.+. +  +   .+-+|  .|.       |.  +-.+....++.+...|-..++
T Consensus       176 e~-~DilQI~A~~~~n----~~LL~~~g~t-~--k---pV~lK--kG~-------~~--s~~e~l~aae~i~~~Gn~~vi  233 (338)
T d1vr6a1         176 EY-ADIIQIGARNAQN----FRLLSKAGSY-N--K---PVLLK--RGF-------MN--TIEEFLLSAEYIANSGNTKII  233 (338)
T ss_dssp             HH-CSEEEECGGGTTC----HHHHHHHHTT-C--S---CEEEE--CCT-------TC--CHHHHHHHHHHHHHTTCCCEE
T ss_pred             ce-eeeEEechhhccC----HHHHHHhhcc-C--C---cEEec--Ccc-------cc--chhhhhhhHHHHHhcCCccce
Confidence            76 9999999988887    9999888763 2  2   24444  231       11  111234456777889999998


Q ss_pred             EeecCC---ccc-cCCCCHHHHHHHhhcCCCcEEE----EeCCCCHH-HH-HHHHHhCCCcCEEEEcc------chhhcc
Q 021156          232 VHGVDV---EGK-KLGIDDELVALLGKYSPIPVTY----AGGVTTMA-DL-EKIKVAGIGRVDVTVGS------ALDIFG  295 (316)
Q Consensus       232 vtdi~~---dG~-~~G~d~eli~~l~~~~~iPVIa----sGGI~s~e-Di-~~l~~~G~g~~gVivG~------Al~~~~  295 (316)
                      ++.+--   .+. ..-.|+..+..+++.+..|||+    +||-+..- .+ +.....|  ++|+++-.      |+  -.
T Consensus       234 lcERG~~t~~~~~~~~lD~~~i~~~k~~~~lPVi~DpsHs~G~r~~v~~larAAvA~G--adGl~iE~Hp~P~~Al--sD  309 (338)
T d1vr6a1         234 LCERGIRTFEKATRNTLDISAVPIIRKESHLPILVDPSHSGGRRDLVIPLSRAAIAVG--AHGIIVEVHPEPEKAL--SD  309 (338)
T ss_dssp             EEECCBCCSCCSSSSBCCTTHHHHHHHHBSSCEEECHHHHHCSGGGHHHHHHHHHHHT--CSEEEEEBCSCGGGCS--SC
T ss_pred             eeeccccccccccccchhhcccceeeccccCceeeCCCCCCCchhHHHHHHHHHHHhC--CCEEEEEeCCCcccCC--CC
Confidence            888742   221 1234888888888788889986    57766542 22 3334456  99999974      44  22


Q ss_pred             Cc--ccHHHHHHHHHh
Q 021156          296 GN--LAYKDVVAWHAQ  309 (316)
Q Consensus       296 g~--~~~~~~~~~~~~  309 (316)
                      |+  ++++++.+++++
T Consensus       310 g~q~l~~~~~~~ll~~  325 (338)
T d1vr6a1         310 GKQSLDFELFKELVQE  325 (338)
T ss_dssp             GGGCBCHHHHHHHHHH
T ss_pred             ccccCCHHHHHHHHHH
Confidence            33  777777776655

>d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 12-oxophytodienoate reductase (OPR, OYE homolog)
species: Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]

Probab=87.13  E-value=0.33  Score=43.68  Aligned_cols=51  Identities=22%  Similarity=0.385  Sum_probs=43.8

Q ss_pred             HHHHH-hCCCcEEEecCCCHHHHHHHHHcC-CCEEEeCCeeecCCCCCHHHHHHHHH
Q 021156          126 IEALH-AYPGGLQVGGGINSDNSLSYIEEG-ATHVIVTSYVFNNGQMDLERLKDLVR  180 (316)
Q Consensus       126 ~~~v~-~~~~pl~vGGGIr~e~~~~~l~~G-ad~VVigt~~~~~~~~~~eli~ei~~  180 (316)
                      .+.++ .+.+|+++.||++.+.+++++..| ||.|-+|-.++.|    |++++++..
T Consensus       299 ~~~ik~~~~~pv~~~Gg~~~~~ae~~l~~G~~DlV~~gR~liaD----Pdlv~K~~~  351 (380)
T d1q45a_         299 MKSLRMAYNGTFMSSGGFNKELGMQAVQQGDADLVSYGRLFIAN----PDLVSRFKI  351 (380)
T ss_dssp             HHHHHHHSCSCEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHC----TTHHHHHHT
T ss_pred             HHHHhhccCCcEEeCCCCCHHHHHHHHHcCCccchhhhHHHHHC----ccHHHHHhc
Confidence            34444 478999999999988889999987 9999999999998    999998875

>d1kv5a_ c.1.1.1 (A:) Triosephosphate isomerase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Trypanosoma brucei [TaxId: 5691]

Probab=86.81  E-value=2  Score=36.23  Aligned_cols=146  Identities=8%  Similarity=0.029  Sum_probs=82.2

Q ss_pred             HHHHHHHcCCCEEEeCCeeecC--CCCCHHHHHHHHHHhc-CceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH
Q 021156          146 NSLSYIEEGATHVIVTSYVFNN--GQMDLERLKDLVRVVG-KQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF  222 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~~~~~--~~~~~eli~ei~~~~G-~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~  222 (316)
                      .+..+.+.||+.|+||=.-++.  ++.+...-+++....- .=..++++.=..     ..+..+....   .+.......
T Consensus        78 S~~mLkd~G~~yvIiGHSERR~~~~Et~~~i~~K~~~~~~~~l~pI~CiGE~~-----~~~~~~~~~~---~l~~Ql~~~  149 (249)
T d1kv5a_          78 SLPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGFMVIACIGETL-----QERESGRTAV---VVLTQIAAI  149 (249)
T ss_dssp             BHHHHHHTTCCEEEESCHHHHHHSCCCHHHHHHHHHHHHHHTCEEEEEECCCH-----HHHHTTCHHH---HHHHHHHHH
T ss_pred             cHHHHHhhccchhhhcchhhhhhhcccHHHHHHHHHHHHhcCCceEEEecccc-----ccccccchHH---HHHHHHHhh
Confidence            3778889999999999654432  3333334444433331 124556664210     0001111110   111112222


Q ss_pred             HHc----CCCEE--EEeecCCccccCCCCHHHHHH----Hh----hcC------CCcEEEEeCCCCHHHHHHHHHhCCCc
Q 021156          223 LAS----YADEF--LVHGVDVEGKKLGIDDELVAL----LG----KYS------PIPVTYAGGVTTMADLEKIKVAGIGR  282 (316)
Q Consensus       223 ~~~----Ga~~i--lvtdi~~dG~~~G~d~eli~~----l~----~~~------~iPVIasGGI~s~eDi~~l~~~G~g~  282 (316)
                      ...    ..+.+  -|=.+.+=||..-++.+.+.+    ++    +..      ++||+|+|-|.. +.+.+++... ++
T Consensus       150 ~~~~~~~~~~~iiIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~~~~ilYGGSV~~-~N~~~i~~~~-~v  227 (249)
T d1kv5a_         150 AKKLKKADWAKVVIAYEPVWAIGTGKVATPQQAQEAHALISSWVSSKIGADVAGELRILYGGSVNG-KNARTLYQQR-DV  227 (249)
T ss_dssp             HHTCCGGGGGGEEEEECCGGGSSSSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHCCEEEESSCCT-TTHHHHHTST-TC
T ss_pred             hcccccccccceEEecCceecccccccccchhhhhhhHHHHHHHHHhcChhhcCCCcEEEcCCCCH-hHHHHHhcCC-CC
Confidence            221    12233  368899999998887665444    22    222      479999998876 6788888775 59


Q ss_pred             CEEEEccchhhccCcccHHHHHH
Q 021156          283 VDVTVGSALDIFGGNLAYKDVVA  305 (316)
Q Consensus       283 ~gVivG~Al~~~~g~~~~~~~~~  305 (316)
                      ||+.||+|-  +. + .|-++.+
T Consensus       228 DG~LVGgAS--l~-~-eF~~Ii~  246 (249)
T d1kv5a_         228 NGFLVGGAS--LK-P-EFVDIIK  246 (249)
T ss_dssp             CEEEESGGG--GS-T-THHHHHH
T ss_pred             CEEEechHh--cC-H-HHHHHHH
Confidence            999999999  75 3 3655543

>d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Alpha subunit of glutamate synthase, central and FMN domains
species: Synechocystis sp. [TaxId: 1143]

Probab=86.55  E-value=2.8  Score=41.05  Aligned_cols=74  Identities=20%  Similarity=0.182  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHcCCCEEEEeecCCcccc---------CCCCHHH-HHHH----hhc---CCCcEEEEeCCCCHHHHHHHHH
Q 021156          215 LDERVLDFLASYADEFLVHGVDVEGKK---------LGIDDEL-VALL----GKY---SPIPVTYAGGVTTMADLEKIKV  277 (316)
Q Consensus       215 ~~e~a~~~~~~Ga~~ilvtdi~~dG~~---------~G~d~el-i~~l----~~~---~~iPVIasGGI~s~eDi~~l~~  277 (316)
                      ....+....+.|+|.|++-.- .-||.         .|..|+. +.+.    .+.   -.+.+|++||+++..|+..++.
T Consensus       611 ~~~ia~~vaka~aD~I~IdG~-eGGTGAap~~~~~~~GlP~~~gl~~a~~~L~~~glR~~V~Lia~Ggl~t~~Dv~ka~a  689 (809)
T d1ofda2         611 IGTIAAGVAKANADIIQISGH-DGGTGASPLSSIKHAGSPWELGVTEVHRVLMENQLRDRVLLRADGGLKTGWDVVMAAL  689 (809)
T ss_dssp             HHHHHHHHHHTTCSEEEEECT-TCCCSSEEHHHHHHBCCCHHHHHHHHHHHHHHTTCGGGCEEEEESSCCSHHHHHHHHH
T ss_pred             hHHHHHHHhhcCCCEEEEeCC-CCccccccHHHHhcCCccHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCHHHHHHHHH
Confidence            445666667789998875443 23444         2556652 3322    211   1589999999999999999999


Q ss_pred             hCCCcCEEEEccch
Q 021156          278 AGIGRVDVTVGSAL  291 (316)
Q Consensus       278 ~G~g~~gVivG~Al  291 (316)
                      +|  ++.|-+|+++
T Consensus       690 LG--AD~v~~gt~~  701 (809)
T d1ofda2         690 MG--AEEYGFGSIA  701 (809)
T ss_dssp             TT--CSEEECSHHH
T ss_pred             hC--CCchhHhHHH
Confidence            99  8999999876

>d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.36  E-value=3  Score=35.35  Aligned_cols=125  Identities=10%  Similarity=0.076  Sum_probs=72.9

Q ss_pred             cEEEecCCC---H-HHHHHHHHcCCCEEEeC-CeeecCCCCCH----HHHHHHHHHhcC-ceEEEeeeeeecCCeeEEEe
Q 021156          135 GLQVGGGIN---S-DNSLSYIEEGATHVIVT-SYVFNNGQMDL----ERLKDLVRVVGK-QRLVLDLSCRKKDGKYAIVT  204 (316)
Q Consensus       135 pl~vGGGIr---~-e~~~~~l~~Gad~VVig-t~~~~~~~~~~----eli~ei~~~~G~-~~IvvslD~k~~~g~~~v~~  204 (316)
                      |+.-.|-|.   . +.++.+++.|++-++++ |+.+- ..++.    ++++.+++..+. -.+++.+..           
T Consensus        18 Pf~~dg~iD~~~l~~~i~~li~~Gv~Gi~v~G~tGE~-~~Ls~eEr~~l~~~~~~~~~~~~~vi~g~~~-----------   85 (296)
T d1xxxa1          18 PFSGDGSLDTATAARLANHLVDQGCDGLVVSGTTGES-PTTTDGEKIELLRAVLEAVGDRARVIAGAGT-----------   85 (296)
T ss_dssp             CBCTTSCBCHHHHHHHHHHHHHTTCSEEEESSTTTTT-TTSCHHHHHHHHHHHHHHHTTTSEEEEECCC-----------
T ss_pred             CCCCCcCcCHHHHHHHHHHHHHcCCCEEEECeeccch-hhCCHHHHHHHHHHHHHHhccccceEecccc-----------
Confidence            444455565   1 34778889999987775 33221 12223    344555555532 223333321           


Q ss_pred             CCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCC---HHHHHHHhhcCCCcEEEE------eCCCCHHHHHHH
Q 021156          205 DRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGID---DELVALLGKYSPIPVTYA------GGVTTMADLEKI  275 (316)
Q Consensus       205 ~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d---~eli~~l~~~~~iPVIas------GGI~s~eDi~~l  275 (316)
                         .  +..+..++++.+.+.|++.+++..----   ...+   .+.++++.+.+++|+++-      |-.-+.+.+.++
T Consensus        86 ---~--s~~~~i~~a~~a~~~Gad~v~i~~P~~~---~~~~~~l~~~~~~v~~~~~~pi~lYn~p~~~g~~~~~~~~~~L  157 (296)
T d1xxxa1          86 ---Y--DTAHSIRLAKACAAEGAHGLLVVTPYYS---KPPQRGLQAHFTAVADATELPMLLYDIPGRSAVPIEPDTIRAL  157 (296)
T ss_dssp             ---S--CHHHHHHHHHHHHHHTCSEEEEECCCSS---CCCHHHHHHHHHHHHTTCSSCEEEEECHHHHSSCCCHHHHHHH
T ss_pred             ---c--hhHHHHHHHHHHHHhcCCeEEEEeccCC---CCCHHHHHHHHHHHHHhcCCCEEEEECccccCCCCCHHHHHHh
Confidence               1  1125778999999999999876543211   1112   235677778889998774      444688888888


Q ss_pred             HHhC
Q 021156          276 KVAG  279 (316)
Q Consensus       276 ~~~G  279 (316)
                      .+..
T Consensus       158 ~~~p  161 (296)
T d1xxxa1         158 ASHP  161 (296)
T ss_dssp             HTST
T ss_pred             cCCC
Confidence            7654

>d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=86.03  E-value=0.48  Score=40.34  Aligned_cols=54  Identities=15%  Similarity=0.192  Sum_probs=42.5

Q ss_pred             cHHHHHHHHHhC--CCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHH
Q 021156          121 SKAAAIEALHAY--PGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDL  178 (316)
Q Consensus       121 ~~~~i~~~v~~~--~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei  178 (316)
                      +.....+....+  +..++.=+||. .+|++++.++|++-+.||+++.++    |+.++++
T Consensus       189 d~~~~~~L~~~ip~~~~~IaESGI~t~~dv~~l~~~G~davLIGeaLmk~----~d~~kel  245 (247)
T d1a53a_         189 NKENQRKLISMIPSNVVKVAESGISERNEIEELRKLGVNAFLIGSSLMRN----PEKIKEF  245 (247)
T ss_dssp             CHHHHHHHHHHSCTTSEEEEESCCCCHHHHHHHHHTTCCEEEECHHHHHC----TTHHHHH
T ss_pred             hhhHHHHHHhhCCCCCeEEEecCCCCHHHHHHHHHCCCCEEEECHHHcCC----CchhhHh
Confidence            445555555544  46788999998 599999999999999999999987    6666654

>d1ad1a_ c.1.21.1 (A:) Dihydropteroate synthetase {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Dihydropteroate synthetase
domain: Dihydropteroate synthetase
species: Staphylococcus aureus [TaxId: 1280]

Probab=85.82  E-value=1.3  Score=37.73  Aligned_cols=90  Identities=13%  Similarity=0.172  Sum_probs=54.9

Q ss_pred             HHHHHHHcCCCEEEeCCeeecCC--CCCH----HHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHH
Q 021156          146 NSLSYIEEGATHVIVTSYVFNNG--QMDL----ERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERV  219 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~~~~~~--~~~~----eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a  219 (316)
                      .++++++.|||.+=||.+.-+-|  .+.+    +.+..+.+......+.+|||.+.                    .+.+
T Consensus        31 ~~~~m~~~GAdiIDIGaeSTrPga~~is~~eE~~Rl~pvi~~l~~~~~~iSIDT~~--------------------~eVa   90 (264)
T d1ad1a_          31 RVKAMMDEGADIIDVGGVSTRPGHEMITVEEELNRVLPVVEAIVGFDVKISVDTFR--------------------SEVA   90 (264)
T ss_dssp             HHHHHHHTTCSEEEEESCCCSTTCCCCCHHHHHHHHHHHHHHHTTSSSEEEEECSC--------------------HHHH
T ss_pred             HHHHHHHCCCCEEEECCccCCCCCCcCCHHHHHHhhhhHhhhhcccCcccchhhhh--------------------HHHH
Confidence            37788899999999997764321  1222    34444445554456889999751                    2677


Q ss_pred             HHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEE
Q 021156          220 LDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTY  262 (316)
Q Consensus       220 ~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIa  262 (316)
                      +++.+.|++  +++|++. |.   .|.++++-++ ..++|++.
T Consensus        91 ~~al~~Ga~--iINDVs~-g~---~d~~~~~~va-~~~~~~il  126 (264)
T d1ad1a_          91 EACLKLGVD--IINDQWA-GL---YDHRMFQVVA-KYDAEIVL  126 (264)
T ss_dssp             HHHHHTTCC--EEEETTT-TS---SCTHHHHHHH-HTTCEEEE
T ss_pred             HHHHhcCCc--Eeecccc-cc---ccccHHHHHh-hcCcceee
Confidence            788888888  5588752 11   1444444443 33556655

>d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Thiamin phosphate synthase
family: Thiamin phosphate synthase
domain: Thiamin phosphate synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=85.75  E-value=0.63  Score=38.69  Aligned_cols=45  Identities=29%  Similarity=0.299  Sum_probs=37.3

Q ss_pred             HHHHHHHH--hCCCcEEEecCCCHHHHHHHHHcCCCEEEeCCeeecC
Q 021156          123 AAAIEALH--AYPGGLQVGGGINSDNSLSYIEEGATHVIVTSYVFNN  167 (316)
Q Consensus       123 ~~i~~~v~--~~~~pl~vGGGIr~e~~~~~l~~Gad~VVigt~~~~~  167 (316)
                      ....+.++  .+++|+..-|||+.+++.+++++||+.|.+.+..++.
T Consensus       159 ~~~~~~~~~~~~~~Pv~AiGGI~~~ni~~l~~~Ga~giAvis~I~~a  205 (226)
T d2tpsa_         159 VSLIEAVRRQGISIPIVGIGGITIDNAAPVIQAGADGVSMISAISQA  205 (226)
T ss_dssp             THHHHHHHHTTCCCCEEEESSCCTTTSHHHHHTTCSEEEESHHHHTS
T ss_pred             cchhHHHHHhcCCCCEEEecCCCHHHHHHHHHhCCCEEEEhHHhhcC
Confidence            33444443  3689999999999999999999999999999998864

>d1jpdx1 c.1.11.2 (X:114-321) L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: L-Ala-D/L-Glu epimerase
species: Escherichia coli [TaxId: 562]

Probab=85.68  E-value=0.9  Score=36.96  Aligned_cols=132  Identities=17%  Similarity=0.161  Sum_probs=89.6

Q ss_pred             HHHHHHHHcCCCEEEe--CCeeecCCCCCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH
Q 021156          145 DNSLSYIEEGATHVIV--TSYVFNNGQMDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF  222 (316)
Q Consensus       145 e~~~~~l~~Gad~VVi--gt~~~~~~~~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~  222 (316)
                      +.++++.+.|...+=+  |.  ..    +.+.++.+.+.+| + +.+.+|+.          .+|..   -+..++++.+
T Consensus        22 ~~a~~~~~~G~~~~KiKvg~--~~----d~~~i~~ir~~~~-d-~~l~vDaN----------~~~s~---~~A~~~~~~l   80 (208)
T d1jpdx1          22 NSASTLWQAGAKLLKVKLDN--HL----ISERMVAIRTAVP-D-ATLIVDAN----------ESWRA---EGLAARCQLL   80 (208)
T ss_dssp             HHHHHHHHTTCSEEEEECCS--SC----HHHHHHHHHHHCT-T-SEEEEECT----------TCCCS---TTHHHHHHHH
T ss_pred             HHHHHHHHCCCCEEEEECCC--Cc----HHHHHHHHHHhcc-c-cEEEEecc----------cccch---hHHHHHHHHH
Confidence            5577888899887544  43  23    3889999999996 3 56788873          35642   2578889999


Q ss_pred             HHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHH
Q 021156          223 LASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKD  302 (316)
Q Consensus       223 ~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~  302 (316)
                      .+.+...+= -.+..      .|++.+++++  ..+|+...-++.+.+|+.++.  + .++.+.+--+.  .+|-....+
T Consensus        81 ~~~~l~~iE-eP~~~------~d~~~~~~l~--~~~pi~~~E~~~~~~~~~~l~--~-~~d~~~~d~~~--~GGi~~~~~  146 (208)
T d1jpdx1          81 ADLGVAMLE-QPLPA------QDDAALENFI--HPLPICADESCHTRSNLKALK--G-RYEMVNIKLDK--TGGLTEALA  146 (208)
T ss_dssp             HHTTCCEEE-CCSCT------TSCGGGGSSC--CSSCEEESTTCSSGGGHHHHB--T-TBSEEEECHHH--HTSHHHHHH
T ss_pred             HhccccccC-ccCCc------cCHHHHHhhh--cccceecCCCcCCHHHHHHHh--h-ccCEEEeCCcc--cCCHHHHHH
Confidence            998876430 11222      2344445554  357999999999999998884  3 27777777766  677666667


Q ss_pred             HHHHHHhhc
Q 021156          303 VVAWHAQQE  311 (316)
Q Consensus       303 ~~~~~~~~~  311 (316)
                      +.+++++++
T Consensus       147 ~a~~a~~~g  155 (208)
T d1jpdx1         147 LATEARAQG  155 (208)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHcC
Confidence            776766644

>d1izca_ c.1.12.5 (A:) Macrophomate synthase {Macrophoma commelinae [TaxId: 108330]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: HpcH/HpaI aldolase
domain: Macrophomate synthase
species: Macrophoma commelinae [TaxId: 108330]

Probab=85.58  E-value=3.6  Score=35.48  Aligned_cols=81  Identities=11%  Similarity=0.097  Sum_probs=51.9

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCCcccHHHH---HHHHHh---CCCcEEEe-cCCCHHHHHHHHHcCCCEEEeCCeee
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGADPLSKAAA---IEALHA---YPGGLQVG-GGINSDNSLSYIEEGATHVIVTSYVF  165 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i---~~~v~~---~~~pl~vG-GGIr~e~~~~~l~~Gad~VVigt~~~  165 (316)
                      .+|. +++.+...|+|+ .++|++=+..+...+   +..++.   ...+..|= -+-....++++|++||+-|++=..  
T Consensus        50 ~s~~-~~e~~a~~g~D~-v~iD~EHg~~~~~~~~~~i~a~~~~~~~~~~~iVRvp~~~~~~I~~~LD~Ga~GIivP~V--  125 (299)
T d1izca_          50 PSTF-VTKVLAATKPDF-VWIDVEHGMFNRLELHDAIHAAQHHSEGRSLVIVRVPKHDEVSLSTALDAGAAGIVIPHV--  125 (299)
T ss_dssp             CCHH-HHHHHHHTCCSE-EEEETTTSCCCHHHHHHHHHHHHHHTTTCSEEEEECCTTCHHHHHHHHHHTCSEEEETTC--
T ss_pred             CCHH-HHHHHHcCCCCE-EEEcCCCCCCCHHHHHHHHHHHHHhCCCCCCeEEeCCCCChHHHHHHHHhCcCeeecccc--
Confidence            4676 999999999997 467888544444444   333332   12222221 122347799999999999998442  


Q ss_pred             cCCCCCHHHHHHHHHH
Q 021156          166 NNGQMDLERLKDLVRV  181 (316)
Q Consensus       166 ~~~~~~~eli~ei~~~  181 (316)
                      ++    .+-++++++.
T Consensus       126 ~s----~eea~~~v~~  137 (299)
T d1izca_         126 ET----VEEVREFVKE  137 (299)
T ss_dssp             CC----HHHHHHHHHH
T ss_pred             cc----HHHHHHHHHh
Confidence            43    7777877765

>d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Bacillus anthracis [TaxId: 1392]

Probab=85.23  E-value=1.7  Score=36.82  Aligned_cols=90  Identities=12%  Similarity=0.095  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHcCCCEEEEeecCCccccCCCC--HHHHHHHhhc--CCCcEEEEeCCCCHHHHHHHH----HhCCCcCEEE
Q 021156          215 LDERVLDFLASYADEFLVHGVDVEGKKLGID--DELVALLGKY--SPIPVTYAGGVTTMADLEKIK----VAGIGRVDVT  286 (316)
Q Consensus       215 ~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d--~eli~~l~~~--~~iPVIasGGI~s~eDi~~l~----~~G~g~~gVi  286 (316)
                      +...++.+.+.|++.+++..-+-++..-..+  .++++.+.+.  -++|++++-|-.+.++..++.    +.|  +++++
T Consensus        26 ~~~~i~~l~~~Gv~gl~~~G~tGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~G--ad~il  103 (292)
T d1xkya1          26 TTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVG--VDAVM  103 (292)
T ss_dssp             HHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHTT--CSEEE
T ss_pred             HHHHHHHHHHCCCCEEEECeEccchhhCCHHHHHHHHHHHHHHhCCCceEEEecCcccHHHHHHHHHHHHHcC--CCEEE
Confidence            5567888889999999988877666655543  2355555544  368999999988888775554    445  99999


Q ss_pred             EccchhhccCcccHHHHHHHHHh
Q 021156          287 VGSALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       287 vG~Al~~~~g~~~~~~~~~~~~~  309 (316)
                      +..-.  |.. .+-+++.++.++
T Consensus       104 v~pP~--~~~-~s~~~i~~~~~~  123 (292)
T d1xkya1         104 LVAPY--YNK-PSQEGMYQHFKA  123 (292)
T ss_dssp             EECCC--SSC-CCHHHHHHHHHH
T ss_pred             ECCCC--CCC-CCHHHHHHHHHH
Confidence            99877  654 477888877654

>d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=85.20  E-value=2.3  Score=35.94  Aligned_cols=90  Identities=18%  Similarity=0.186  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHcCCCEEEEeecCCccccCCCCH--HHHHHHhhc--CCCcEEEEeCCCCHHHHHHHHH----hCCCcCEEE
Q 021156          215 LDERVLDFLASYADEFLVHGVDVEGKKLGIDD--ELVALLGKY--SPIPVTYAGGVTTMADLEKIKV----AGIGRVDVT  286 (316)
Q Consensus       215 ~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~--eli~~l~~~--~~iPVIasGGI~s~eDi~~l~~----~G~g~~gVi  286 (316)
                      +.+.++.+.+.|++.+++..-+-++..--.+.  ++++...+.  .++||+++-|-.+.++..++.+    .|  +++++
T Consensus        24 ~~~~i~~l~~~Gv~Gi~v~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~st~~ai~~a~~A~~~G--ad~v~  101 (295)
T d1o5ka_          24 YERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLG--ANGVL  101 (295)
T ss_dssp             HHHHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHT--CSEEE
T ss_pred             HHHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHhhhhccccccCCceEeecccccHHHHHHHHHHHHHcC--CCEEE
Confidence            55677888899999998877665555433321  244444443  3689999999888888655554    45  99999


Q ss_pred             EccchhhccCcccHHHHHHHHHh
Q 021156          287 VGSALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       287 vG~Al~~~~g~~~~~~~~~~~~~  309 (316)
                      +.--.  |. +.+-+++.++.++
T Consensus       102 v~pP~--y~-~~s~~~i~~~~~~  121 (295)
T d1o5ka_         102 VVTPY--YN-KPTQEGLYQHYKY  121 (295)
T ss_dssp             EECCC--SS-CCCHHHHHHHHHH
T ss_pred             EeCCC--CC-CCCHHHHHHHHHH
Confidence            98877  64 4578888887665

>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: NTRC receiver domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=85.05  E-value=2.6  Score=30.90  Aligned_cols=79  Identities=13%  Similarity=0.131  Sum_probs=56.2

Q ss_pred             HHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhh-cCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhcc
Q 021156          217 ERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGK-YSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFG  295 (316)
Q Consensus       217 e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~-~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~  295 (316)
                      +....+.+...+- ++.|+.--+.   -.+++++++++ ..++|+|+-.+..+.++..++++.|  +      ..+  ..
T Consensus        38 ~a~~~l~~~~~dl-ii~D~~mp~~---~G~el~~~l~~~~~~~piI~~t~~~~~~~~~~a~~~G--a------~dy--l~  103 (123)
T d1krwa_          38 EVLAALASKTPDV-LLSDIRMPGM---DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQG--A------FDY--LP  103 (123)
T ss_dssp             HHHHHHTTCCCSE-EEECCSSSSS---TTHHHHHHHHHHSSSCCEEESCCCSCHHHHHHHHHHT--E------EEE--CS
T ss_pred             HHHHHHHhCCCCE-EEehhhcCCc---hHHHHHHHHHHhCCCCeEEEEecCCCHHHHHHHHHcC--C------CeE--Ee
Confidence            3344444555664 4577654321   24688888865 4679999999999999999999998  4      334  67


Q ss_pred             CcccHHHHHHHHHh
Q 021156          296 GNLAYKDVVAWHAQ  309 (316)
Q Consensus       296 g~~~~~~~~~~~~~  309 (316)
                      .|++.+++.+.+++
T Consensus       104 KP~~~~eL~~~i~~  117 (123)
T d1krwa_         104 KPFDIDEAVALVER  117 (123)
T ss_dssp             SCCHHHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHH
Confidence            88889988876654

>d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Escherichia coli [TaxId: 562]

Probab=84.95  E-value=2.5  Score=35.80  Aligned_cols=92  Identities=16%  Similarity=0.168  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHcCCCEEEEeecCCccccCCCCH--HHHHHHhhc--CCCcEEEEeCCCCHHHHHHHHHhC--CCcCEEEEc
Q 021156          215 LDERVLDFLASYADEFLVHGVDVEGKKLGIDD--ELVALLGKY--SPIPVTYAGGVTTMADLEKIKVAG--IGRVDVTVG  288 (316)
Q Consensus       215 ~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~--eli~~l~~~--~~iPVIasGGI~s~eDi~~l~~~G--~g~~gVivG  288 (316)
                      +...++.+.+.|++.+++..-+-++..-..+.  ++++.+.+.  ..+|++++.+-.+.++..++.+.-  .|++++++.
T Consensus        24 ~~~~i~~l~~~Gv~Gl~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~g~~~~s~~~~i~~~~~a~~~Gad~~~~~  103 (292)
T d2a6na1          24 LKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTV  103 (292)
T ss_dssp             HHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHTTTTSSCCEEEEE
T ss_pred             HHHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHhhhhhhhccccceeEeecccchHHHHHHHhccHHhcCCcceecc
Confidence            45567888889999998877765555443332  345555443  358999999999999888877653  269999999


Q ss_pred             cchhhccCcccHHHHHHHHHh
Q 021156          289 SALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       289 ~Al~~~~g~~~~~~~~~~~~~  309 (316)
                      .-.  |. +.+-+++.++.+.
T Consensus       104 pP~--~~-~~~~~~i~~~f~~  121 (292)
T d2a6na1         104 TPY--YN-RPSQEGLYQHFKA  121 (292)
T ss_dssp             CCC--SS-CCCHHHHHHHHHH
T ss_pred             CCC--CC-CCCHHHHHHHHHH
Confidence            887  64 5688888887664

>d1neya_ c.1.1.1 (A:) Triosephosphate isomerase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.47  E-value=0.29  Score=41.75  Aligned_cols=138  Identities=14%  Similarity=0.049  Sum_probs=75.7

Q ss_pred             HHHHHHHcCCCEEEeCCeeecC--CCCCHHHHHHHHHHhcC-ceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHH-
Q 021156          146 NSLSYIEEGATHVIVTSYVFNN--GQMDLERLKDLVRVVGK-QRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLD-  221 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~~~~~--~~~~~eli~ei~~~~G~-~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~-  221 (316)
                      .+..+.+.||+.|+||=.-++.  ++-|...-+++....-. =..++++.=..     .-+-.+...   .-+.+.... 
T Consensus        78 Sa~mLkd~G~~yviIGHSERR~~f~Etd~~i~~K~~~al~~gl~pIlCVGEtl-----e~r~~~~~~---~~~~~Ql~~~  149 (247)
T d1neya_          78 SVDQIKDVGAKYVILGHSERRSYFHEDDKFIADKTKFALGQGVGVILCIGETL-----EEKKAGKTL---DVVERQLNAV  149 (247)
T ss_dssp             CHHHHHHTTCCEEEESCHHHHHTTCCCHHHHHHHHHHHHHTTCEEEEEECCCH-----HHHHTTCHH---HHHHHHHHHH
T ss_pred             hHHHHHhhccchhhhcchhhhhhccchHHHHHHHHHHHhhcCceEEEEecchh-----hhhccccch---hhhHHHHHhh
Confidence            3778889999999999654432  33333333334443311 24556663110     000011100   001111111 


Q ss_pred             HHHc-CCCEE--EEeecCCccccCCCCHHHHHHH----hhc----------CCCcEEEEeCCCCHHHHHHHHHhCCCcCE
Q 021156          222 FLAS-YADEF--LVHGVDVEGKKLGIDDELVALL----GKY----------SPIPVTYAGGVTTMADLEKIKVAGIGRVD  284 (316)
Q Consensus       222 ~~~~-Ga~~i--lvtdi~~dG~~~G~d~eli~~l----~~~----------~~iPVIasGGI~s~eDi~~l~~~G~g~~g  284 (316)
                      +... ..+.+  -|-.+.+-||..-+..+-+.++    ++.          -++||+|+|-|.. +.+.++++.. ++||
T Consensus       150 l~~~~~~~~iiIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~~i~iLYGGSV~~-~N~~~i~~~~-~iDG  227 (247)
T d1neya_         150 LEEVKDFTNVVVAYEPVWAIGTGLAATPEDAQDIHASIRKFLASKLGDKAASELRILYGGSANG-SNAVTFKDKA-DVDG  227 (247)
T ss_dssp             HHHCCCCTTEEEEECCGGGTTTSCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHCCEEEESSCCT-TTGGGGTTCT-TCCE
T ss_pred             hcccccccceEEEecchhcccCCcccChhhhhhhhHHHHHHHHHhhhhhhcccCcEEEeCCCCH-HHHHHHhcCC-CCCe
Confidence            1121 12323  3678899999887765544332    211          1478999988766 6788888776 6999


Q ss_pred             EEEccchhhcc
Q 021156          285 VTVGSALDIFG  295 (316)
Q Consensus       285 VivG~Al~~~~  295 (316)
                      +.||.|-  +.
T Consensus       228 ~LVGgAS--L~  236 (247)
T d1neya_         228 FLVGGAS--LK  236 (247)
T ss_dssp             EEESGGG--GS
T ss_pred             EEeehHh--CC
Confidence            9999998  75

>d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoP receiver domain
species: Escherichia coli [TaxId: 562]

Probab=84.42  E-value=5.7  Score=28.74  Aligned_cols=79  Identities=13%  Similarity=0.088  Sum_probs=56.3

Q ss_pred             HHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhc-CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhcc
Q 021156          217 ERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKY-SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFG  295 (316)
Q Consensus       217 e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~-~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~  295 (316)
                      +....+.+.-.+- ++.|+.--++ .  -+++++++++. .++|+|+-.+-.+.++..++++.|  +++      +  ..
T Consensus        35 eal~~l~~~~~dl-iilD~~mP~~-~--G~e~~~~i~~~~~~~pvi~lt~~~~~~~~~~a~~~G--a~~------y--l~  100 (119)
T d2pl1a1          35 EADYYLNEHIPDI-AIVDLGLPDE-D--GLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAG--ADD------Y--VT  100 (119)
T ss_dssp             HHHHHHHHSCCSE-EEECSCCSSS-C--HHHHHHHHHHTTCCSCEEEEESCCCHHHHHHHHHTT--CSE------E--EE
T ss_pred             HHHHHHHhcccce-eehhccCCCc-h--hHHHHHHHHhcCcccceEeeeccCCHHHHHHHHHcC--CCE------E--EE
Confidence            4444555555664 4577654221 2  37899999764 589999999999999999999998  544      3  56


Q ss_pred             CcccHHHHHHHHHh
Q 021156          296 GNLAYKDVVAWHAQ  309 (316)
Q Consensus       296 g~~~~~~~~~~~~~  309 (316)
                      .|++.+++.+.+++
T Consensus       101 KP~~~~~L~~~v~~  114 (119)
T d2pl1a1         101 KPFHIEEVMARMQA  114 (119)
T ss_dssp             SSCCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHH
Confidence            78888888776543

>d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Thermus thermophilus [TaxId: 274]

Probab=84.30  E-value=0.87  Score=37.66  Aligned_cols=26  Identities=23%  Similarity=0.572  Sum_probs=23.2

Q ss_pred             CCcEEEecCCC-HHHHHHHHHcCCCEE
Q 021156          133 PGGLQVGGGIN-SDNSLSYIEEGATHV  158 (316)
Q Consensus       133 ~~pl~vGGGIr-~e~~~~~l~~Gad~V  158 (316)
                      .+.+-..|||| .+++.+++++||+|+
T Consensus       175 ~~~iKasGGIrt~~~a~~~l~aGa~ri  201 (211)
T d1ub3a_         175 RAQVKAAGGIRDRETALRMLKAGASRL  201 (211)
T ss_dssp             SSEEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred             CceEECcCCCCCHHHHHHHHHHhhhHh
Confidence            46788999999 599999999999985

>d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: TorCAD operon transcriptional regulator TorD, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=84.22  E-value=5.7  Score=28.60  Aligned_cols=80  Identities=11%  Similarity=0.010  Sum_probs=57.9

Q ss_pred             HHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhcc
Q 021156          216 DERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFG  295 (316)
Q Consensus       216 ~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~  295 (316)
                      .+....+.+...+-+ +.|+.-.+. .  .+++++.+++...+|+|+-.+-.+.++..+++++|  ++      .+  ..
T Consensus        35 ~~a~~~~~~~~~dli-ilD~~mp~~-~--g~~~~~~~~~~~~~piI~lt~~~~~~~~~~a~~~G--a~------dy--l~  100 (120)
T d1zgza1          35 AGLREIMQNQSVDLI-LLDINLPDE-N--GLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMG--AD------DY--VT  100 (120)
T ss_dssp             HHHHHHHHHSCCSEE-EEESCCSSS-C--HHHHHHHHHTTCCCEEEEEESSCCHHHHHHHHHHT--CS------EE--EE
T ss_pred             HHHHHHHHhcCCCEE-eeehhhccc-h--hHHHHHHHhccCCCeEEEEEccCCHHHHHHHHHCC--CC------EE--EE
Confidence            345555666667754 567755432 2  36788888887889999999999999999999999  43      34  56


Q ss_pred             CcccHHHHHHHHHh
Q 021156          296 GNLAYKDVVAWHAQ  309 (316)
Q Consensus       296 g~~~~~~~~~~~~~  309 (316)
                      .|+.++++.+..++
T Consensus       101 KP~~~~~L~~~i~~  114 (120)
T d1zgza1         101 KPLELRELVVRVKN  114 (120)
T ss_dssp             SSCCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHH
Confidence            78888888775544

>d1mo0a_ c.1.1.1 (A:) Triosephosphate isomerase {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=84.20  E-value=1.5  Score=37.22  Aligned_cols=146  Identities=12%  Similarity=0.102  Sum_probs=81.2

Q ss_pred             HHHHHHHcCCCEEEeCCeeecC--CCCCHHHHHHHHHHhcC-ceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH
Q 021156          146 NSLSYIEEGATHVIVTSYVFNN--GQMDLERLKDLVRVVGK-QRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF  222 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~~~~~--~~~~~eli~ei~~~~G~-~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~  222 (316)
                      .+..+.+.||+.|+||=.-++.  ++-|...-+++....-. =..++++-=...     .+-.+ .  +...+.......
T Consensus        86 Sa~mL~d~G~~yviiGHSERR~~~~Etd~~i~~K~~~al~~~l~pIlCvGE~~~-----~~~~~-~--~~~~~~~Ql~~~  157 (257)
T d1mo0a_          86 SPAMIKDLGLEWVILGHSERRHVFGESDALIAEKTVHALEAGIKVVFCIGEKLE-----EREAG-H--TKDVNFRQLQAI  157 (257)
T ss_dssp             CHHHHHHTTCCEEEESCHHHHHTSCCCHHHHHHHHHHHHHTTCEEEEEECCCHH-----HHHTT-C--HHHHHHHHHHHH
T ss_pred             cHHHHHHhCcceeeecchhhhhhhcchHHHHHHHHHHHhhccceEEEeeccccc-----ccccc-c--hhheehhhhhcc
Confidence            3778889999999999654432  34334444444444311 234555531100     00000 0  000111222222


Q ss_pred             HHcCC--CEE--EEeecCCccccCCCCHHHHHHHh----hc----C------CCcEEEEeCCCCHHHHHHHHHhCCCcCE
Q 021156          223 LASYA--DEF--LVHGVDVEGKKLGIDDELVALLG----KY----S------PIPVTYAGGVTTMADLEKIKVAGIGRVD  284 (316)
Q Consensus       223 ~~~Ga--~~i--lvtdi~~dG~~~G~d~eli~~l~----~~----~------~iPVIasGGI~s~eDi~~l~~~G~g~~g  284 (316)
                      .+.+.  +.+  -|=.+.+=||..-+..+.+.++.    +.    .      ++||+++|-|.. +.+.++++.. ++||
T Consensus       158 ~~~~~~~~~iiIAYEPvWAIGtG~~a~~~~i~e~~~~Ir~~l~~~~~~~~~~~~~iLYGGSV~~-~N~~~i~~~~-~vDG  235 (257)
T d1mo0a_         158 VDKGVSWENIVIAYEPVWAIGTGKTASGEQAQEVHEWIRAFLKEKVSPAVADATRIIYGGSVTA-DNAAELGKKP-DIDG  235 (257)
T ss_dssp             HTTTCCSTTEEEEECCGGGTTTSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHSCEEEESSCCT-TTHHHHTTST-TCCE
T ss_pred             ccccccccceEEEecchhhcccccccchhhhhhHHHHHHHHHHHhhCHhhcCcccEEeeCCcCH-HHHHHHhcCC-CCCe
Confidence            22222  223  36788999998888766544432    21    1      478999988765 5688888765 5999


Q ss_pred             EEEccchhhccCcccHHHHHH
Q 021156          285 VTVGSALDIFGGNLAYKDVVA  305 (316)
Q Consensus       285 VivG~Al~~~~g~~~~~~~~~  305 (316)
                      +.||+|-  +. + .|-++.+
T Consensus       236 ~LVGgAS--L~-~-~F~~Ii~  252 (257)
T d1mo0a_         236 FLVGGAS--LK-P-DFVKIIN  252 (257)
T ss_dssp             EEESGGG--GS-T-HHHHHHH
T ss_pred             EEeehHh--CC-h-HHHHHHH
Confidence            9999999  75 3 3555543

>d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein FixJ, receiver domain
species: Rhizobium meliloti [TaxId: 382]

Probab=83.80  E-value=4.4  Score=29.56  Aligned_cols=77  Identities=17%  Similarity=0.096  Sum_probs=55.5

Q ss_pred             HHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhh-cCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCc
Q 021156          219 VLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGK-YSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGN  297 (316)
Q Consensus       219 a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~-~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~  297 (316)
                      ...+.+... .++++|+.--++ .  .+++++++++ ..++|+|+-.|-.+.+...++++.|  +++      +  ...|
T Consensus        40 l~~~~~~~~-dlvi~D~~mp~~-~--G~e~~~~lr~~~~~~~iI~lt~~~~~~~~~~a~~~G--a~~------y--l~KP  105 (123)
T d1dbwa_          40 LAFAPDVRN-GVLVTDLRMPDM-S--GVELLRNLGDLKINIPSIVITGHGDVPMAVEAMKAG--AVD------F--IEKP  105 (123)
T ss_dssp             HHHGGGCCS-EEEEEECCSTTS-C--HHHHHHHHHHTTCCCCEEEEECTTCHHHHHHHHHTT--CSE------E--EESS
T ss_pred             HHHHhhcCC-cEEEEeccCccc-c--chHHHHHHHhcCCCCeEEEEEeeCCHHHHHHHHHCC--CCE------E--EECC
Confidence            333334334 466788865433 2  3688888876 4579999999999999999999998  533      4  5678


Q ss_pred             ccHHHHHHHHHh
Q 021156          298 LAYKDVVAWHAQ  309 (316)
Q Consensus       298 ~~~~~~~~~~~~  309 (316)
                      ++.+++.+..++
T Consensus       106 ~~~~~L~~~i~~  117 (123)
T d1dbwa_         106 FEDTVIIEAIER  117 (123)
T ss_dssp             CCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHH
Confidence            888888876654

>d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein KdpE, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=83.17  E-value=3.8  Score=29.72  Aligned_cols=79  Identities=15%  Similarity=0.146  Sum_probs=57.3

Q ss_pred             HHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccC
Q 021156          217 ERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGG  296 (316)
Q Consensus       217 e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g  296 (316)
                      +....+.+...+- ++.|+.--++ .  .+++++++++..+.|+|+--+-.+.++..++++.|  +++      +  ...
T Consensus        35 eal~~l~~~~~dl-iilD~~mP~~-~--G~e~~~~ir~~~~~piI~lt~~~~~~~~~~a~~~G--a~d------y--l~K  100 (119)
T d1zh2a1          35 RGLLEAATRKPDL-IILDLGLPDG-D--GIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAG--ADD------Y--LSK  100 (119)
T ss_dssp             HHHHHHHHHCCSE-EEEESEETTE-E--HHHHHHHHHTTCCCCEEEEESCCSHHHHHHHHHHT--CSE------E--EES
T ss_pred             HHHHHHHhcCCCE-EEeccccCCC-C--CchHHHHHHhccCCcEEEEeccCCHHHHHHHHHcC--CCE------E--EEC
Confidence            4445555566774 4577654321 2  37899999988889999999999999999999999  543      3  557


Q ss_pred             cccHHHHHHHHHh
Q 021156          297 NLAYKDVVAWHAQ  309 (316)
Q Consensus       297 ~~~~~~~~~~~~~  309 (316)
                      |++.+++.+..++
T Consensus       101 P~~~~~L~~~i~~  113 (119)
T d1zh2a1         101 PFGIGELQARLRV  113 (119)
T ss_dssp             SCCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHH
Confidence            7888888775544

>d1qapa1 c.1.17.1 (A:130-296) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=83.05  E-value=3.3  Score=32.74  Aligned_cols=64  Identities=19%  Similarity=0.195  Sum_probs=46.4

Q ss_pred             HHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhc--CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccch
Q 021156          216 DERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKY--SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSAL  291 (316)
Q Consensus       216 ~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~--~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al  291 (316)
                      .+.++++.+.|++.|++-..+         .+.+++..+.  ..+.+.+||||. .+.+.+..+.|  ++.+.+|+-.
T Consensus        89 ~~~~~~a~~~g~diImLDN~~---------pe~~~~av~~i~~~~~lEaSGgI~-~~ni~~ya~~G--VD~IS~galt  154 (167)
T d1qapa1          89 LDELDDALKAGADIIMLDNFN---------TDQMREAVKRVNGQARLEVSGNVT-AETLREFAETG--VDFISVGALT  154 (167)
T ss_dssp             HHHHHHHHHTTCSEEEESSCC---------HHHHHHHHHTTCTTCCEEECCCSC-HHHHHHHHHTT--CSEEECSHHH
T ss_pred             HHHHHHHHhcCCcEEEecCCC---------HHHHHHHHHhcCCceEEEEeCCCC-HHHHHHHHHcC--CCEEECCccc
Confidence            356778889999987754443         3444454433  257889999985 58899999988  8988888766

>d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.82  E-value=3.7  Score=34.72  Aligned_cols=92  Identities=14%  Similarity=0.086  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHcCCCEEEEeecCCccccCCCC--HHHHHHHhhc--CCCcEEEEeCCCCHHHHHHHHHhC--CCcCEEEEc
Q 021156          215 LDERVLDFLASYADEFLVHGVDVEGKKLGID--DELVALLGKY--SPIPVTYAGGVTTMADLEKIKVAG--IGRVDVTVG  288 (316)
Q Consensus       215 ~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d--~eli~~l~~~--~~iPVIasGGI~s~eDi~~l~~~G--~g~~gVivG  288 (316)
                      +.+.++.+.+.|++.+++...+-++..--.+  .++++.+.+.  .++|++++-|-.+.++..++.+.-  .|++++++.
T Consensus        30 l~~~i~~li~~Gv~Gi~v~G~tGE~~~Ls~eEr~~l~~~~~~~~~~~~~vi~g~~~~s~~~~i~~a~~a~~~Gad~v~i~  109 (296)
T d1xxxa1          30 AARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVV  109 (296)
T ss_dssp             HHHHHHHHHHTTCSEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             HHHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHHHHHHHHhccccceEeccccchhHHHHHHHHHHHHhcCCeEEEE
Confidence            5567888999999999887766554433222  1244444443  358999999888888776655431  139999999


Q ss_pred             cchhhccCcccHHHHHHHHHh
Q 021156          289 SALDIFGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       289 ~Al~~~~g~~~~~~~~~~~~~  309 (316)
                      .-.  |. +.+-+++.++.++
T Consensus       110 ~P~--~~-~~~~~~l~~~~~~  127 (296)
T d1xxxa1         110 TPY--YS-KPPQRGLQAHFTA  127 (296)
T ss_dssp             CCC--SS-CCCHHHHHHHHHH
T ss_pred             ecc--CC-CCCHHHHHHHHHH
Confidence            888  74 4577888887665

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=82.77  E-value=10  Score=30.50  Aligned_cols=156  Identities=14%  Similarity=0.036  Sum_probs=91.7

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCc-ccHHHHHHHHHhCCCcEEEecCCC-H-HHHHH----HHHcCCCEEEeCCeeec
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADP-LSKAAAIEALHAYPGGLQVGGGIN-S-DNSLS----YIEEGATHVIVTSYVFN  166 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~-~~~~~i~~~v~~~~~pl~vGGGIr-~-e~~~~----~l~~Gad~VVigt~~~~  166 (316)
                      ....+|..+...| ..+-++-.|.-. .-.+.+....+..++|+.+..--. . +.+..    ....++|.|+|+|+-+.
T Consensus        22 TiaKLA~~~~~~g-~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~~~~~~~~~d~ilIDTaGr~  100 (207)
T d1okkd2          22 TIAKLGRYYQNLG-KKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYDAVQAMKARGYDLLFVDTAGRL  100 (207)
T ss_dssp             HHHHHHHHHHTTT-CCEEEECCCCSSTTHHHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHHHHHTCSEEEECCCCCC
T ss_pred             HHHHHHHHHHHCC-CcEEEEEeccccccchhhHhhcccccCceEEeccCCccHHHHHHHHHHHHHHCCCCEEEcCccccc
Confidence            4567888887777 456677666432 233445555556788887766543 3 33332    23458999999999864


Q ss_pred             CCCCCHHHHHHHHHHh---------cCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCC
Q 021156          167 NGQMDLERLKDLVRVV---------GKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDV  237 (316)
Q Consensus       167 ~~~~~~eli~ei~~~~---------G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~  237 (316)
                      .  .+.++++++.+..         -+..+++-+|.-  .+             ..+..+....+...+++.+++|-+|.
T Consensus       101 ~--~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~--~~-------------~~~~~~~~~~~~~~~~~~lI~TKlDe  163 (207)
T d1okkd2         101 H--TKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAV--TG-------------QNGLEQAKKFHEAVGLTGVIVTKLDG  163 (207)
T ss_dssp             T--TCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETT--BC-------------THHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred             h--hhHHHHHHHHHHHHHhhhcccCCCceEEEEeecc--cC-------------chHHHHHHHhhhccCCceEEEeccCC
Confidence            2  2366666655432         123455556542  11             11356677788889999999999986


Q ss_pred             ccccCCCCHHHHHHHhhcCCCcE-EEEeCCCCHHHHH
Q 021156          238 EGKKLGIDDELVALLGKYSPIPV-TYAGGVTTMADLE  273 (316)
Q Consensus       238 dG~~~G~d~eli~~l~~~~~iPV-IasGGI~s~eDi~  273 (316)
                      .-. -|.=++    +....++|| .++.| ..++|++
T Consensus       164 t~~-~G~~l~----~~~~~~~Pi~~i~~G-q~p~Dl~  194 (207)
T d1okkd2         164 TAK-GGVLIP----IVRTLKVPIKFVGVG-EGPDDLQ  194 (207)
T ss_dssp             SCC-CTTHHH----HHHHHCCCEEEEECS-SSTTCEE
T ss_pred             CCC-ccHHHH----HHHHHCCCEEEEeCC-CChHhCc
Confidence            533 333222    233457787 44455 3366553

>d2czda1 c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=82.68  E-value=4.8  Score=32.16  Aligned_cols=145  Identities=13%  Similarity=0.075  Sum_probs=75.2

Q ss_pred             hCCCcEEEecCCC-----H-HHHHHHHHcCCCEEEeCCeeecCCCCCHHHHHHHHHHhcCceEE-EeeeeeecCCeeEEE
Q 021156          131 AYPGGLQVGGGIN-----S-DNSLSYIEEGATHVIVTSYVFNNGQMDLERLKDLVRVVGKQRLV-LDLSCRKKDGKYAIV  203 (316)
Q Consensus       131 ~~~~pl~vGGGIr-----~-e~~~~~l~~Gad~VVigt~~~~~~~~~~eli~ei~~~~G~~~Iv-vslD~k~~~g~~~v~  203 (316)
                      ..+.|+..+-=+-     . ..++.++++|+|.+.+-+.  ..    ++.++.+.+ .+ ..+. ..++..         
T Consensus        49 ~~~~~if~DlK~~Di~~t~~~~~~~~~~~gad~~Tvh~~--~g----~~~i~~~~~-~~-~~~~~~~~s~~---------  111 (206)
T d2czda1          49 ETGVEIIADLKLADIPNTNRLIARKVFGAGADYVIVHTF--VG----RDSVMAVKE-LG-EIIMVVEMSHP---------  111 (206)
T ss_dssp             HHCCEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEEST--TC----HHHHHHHHT-TS-EEEEECCCCSG---------
T ss_pred             hcCCeEEEEeeeeeecccchheehhhccccccEEEeeec--cc----HHHHHHhhh-cc-cceEEEeccCC---------
Confidence            3467787775542     1 3478888999999988543  22    666766544 32 2221 111111         


Q ss_pred             eCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhcCC-CcEEEEeCCCC-HHHHHHHHHhCCC
Q 021156          204 TDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKYSP-IPVTYAGGVTT-MADLEKIKVAGIG  281 (316)
Q Consensus       204 ~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~~~-iPVIasGGI~s-~eDi~~l~~~G~g  281 (316)
                        +..+....-.....+...+.+...+...         +...+.++.+++..+ --.+..+||+. ..+..++.+.|  
T Consensus       112 --~~~~~~~~~~~~~~~~a~~~~~~g~~~~---------~~~~~~~~~~r~~~~~~~~i~~pGI~~~~~~~~~ai~~G--  178 (206)
T d2czda1         112 --GALEFINPLTDRFIEVANEIEPFGVIAP---------GTRPERIGYIRDRLKEGIKILAPGIGAQGGKAKDAVKAG--  178 (206)
T ss_dssp             --GGGTTTGGGHHHHHHHHHHHCCSEEECC---------CSSTHHHHHHHHHSCTTCEEEECCCCSSTTHHHHHHHHT--
T ss_pred             --cccccccHHHHHHHHHHHhccccccccc---------ccCchhhhhhhhhhcccceEECCCccccCCCHHHHHHhC--
Confidence              0000000012223334444455444321         122344555555432 22355666653 34677788888  


Q ss_pred             cCEEEEccchhhccCcccHHHHHHHH
Q 021156          282 RVDVTVGSALDIFGGNLAYKDVVAWH  307 (316)
Q Consensus       282 ~~gVivG~Al~~~~g~~~~~~~~~~~  307 (316)
                      ++-+||||++  +.-.=+.+.+.++.
T Consensus       179 ad~iVvGR~I--~~a~dP~~aa~~i~  202 (206)
T d2czda1         179 ADYIIVGRAI--YNAPNPREAAKAIY  202 (206)
T ss_dssp             CSEEEECHHH--HTSSSHHHHHHHHH
T ss_pred             CCEEEEChhh--ccCCCHHHHHHHHH
Confidence            8889999999  76543333344443

>d1r2ra_ c.1.1.1 (A:) Triosephosphate isomerase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=82.23  E-value=0.5  Score=40.15  Aligned_cols=138  Identities=12%  Similarity=0.043  Sum_probs=77.8

Q ss_pred             HHHHHHHcCCCEEEeCCeeecC--CCCCHHHHHHHHHHhcC-ceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH
Q 021156          146 NSLSYIEEGATHVIVTSYVFNN--GQMDLERLKDLVRVVGK-QRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF  222 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~~~~~--~~~~~eli~ei~~~~G~-~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~  222 (316)
                      .+..+.+.||+.|+||=.-++.  ++-|...-+++....-. =..++++.=..     .-+-.+...   .-+.+..+..
T Consensus        77 Sa~mL~d~G~~~viiGHSERR~~f~Etd~~i~~K~~~al~~gl~pIlCVGEt~-----~er~~g~t~---~~l~~Ql~~~  148 (246)
T d1r2ra_          77 SPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALSEGLGVIACIGEKL-----DEREAGITE---KVVFEQTKVI  148 (246)
T ss_dssp             CHHHHHHTTCCEEEESCHHHHHTSCCCHHHHHHHHHHHHHTTCEEEEEECCCH-----HHHHTTCHH---HHHHHHHHHH
T ss_pred             cHHHHHHHhhhhhhhcchhhhhhcCCCHHHHHHHHHHhhccCceEEEEecCcc-----ccccccchh---hhHHHHHHHH
Confidence            3778889999999999654432  44444455555544411 23455553110     000011110   0111222222


Q ss_pred             HHc--CCCEEE--EeecCCccccCCCCHHHHHHH--------hhc------CCCcEEEEeCCCCHHHHHHHHHhCCCcCE
Q 021156          223 LAS--YADEFL--VHGVDVEGKKLGIDDELVALL--------GKY------SPIPVTYAGGVTTMADLEKIKVAGIGRVD  284 (316)
Q Consensus       223 ~~~--Ga~~il--vtdi~~dG~~~G~d~eli~~l--------~~~------~~iPVIasGGI~s~eDi~~l~~~G~g~~g  284 (316)
                      .+.  ..+.++  |-.+.+-||..-+..+.+.++        .+.      -++||+|+|-|.. +.+.+++... ++||
T Consensus       149 l~~~~~~~~iiiAYEPvWAIGTG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~~i~ilYGGSV~~-~N~~~i~~~~-~vDG  226 (246)
T d1r2ra_         149 ADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTG-ATCKELASQP-DVDG  226 (246)
T ss_dssp             HHTCSCGGGEEEEECCGGGSSSSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHCCEEECSCCCT-TTHHHHHTST-TCCE
T ss_pred             hhcccccceEEEecCceeeccCCCCccchhhhhhHHHHHHHHHHhhhHhhcCcccEEecCCCCH-HHHHHHhcCC-CCCe
Confidence            221  123333  688999999887766544321        121      1478999988865 6688888775 6999


Q ss_pred             EEEccchhhcc
Q 021156          285 VTVGSALDIFG  295 (316)
Q Consensus       285 VivG~Al~~~~  295 (316)
                      +.||.|-  +.
T Consensus       227 ~LVGgAS--L~  235 (246)
T d1r2ra_         227 FLVGGAS--LK  235 (246)
T ss_dssp             EEESGGG--GS
T ss_pred             EEeehhh--CC
Confidence            9999999  75

>d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator PleD, receiver domain
species: Caulobacter crescentus [TaxId: 155892]

Probab=82.15  E-value=3  Score=31.24  Aligned_cols=77  Identities=14%  Similarity=0.056  Sum_probs=51.8

Q ss_pred             HHHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhh---cCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchh
Q 021156          216 DERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGK---YSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALD  292 (316)
Q Consensus       216 ~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~---~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~  292 (316)
                      .+....+.+...+ +++.|+.-.+. .  -+++++.+++   ..++|||+-.+-.+.++..+++++|  +++.       
T Consensus        35 ~eal~~~~~~~~d-lil~D~~~p~~-~--G~~~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~G--a~dy-------  101 (139)
T d1w25a1          35 PTALAMAARDLPD-IILLDVMMPGM-D--GFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESG--ASDF-------  101 (139)
T ss_dssp             HHHHHHHHHHCCS-EEEEESCCSSS-C--HHHHHHHHHHSTTTTTSCEEEEECSSCHHHHHHHHHHT--CCEE-------
T ss_pred             hhhhhhhhcccce-eeeeeccccCC-C--chHHHHHhhhcccccCCCEEEEEcCCCHHHHHHHHHcC--CCEE-------
Confidence            3445555666677 45577754322 2  3566666654   3478999999999999999999999  5543       


Q ss_pred             hccCcccHHHHHHH
Q 021156          293 IFGGNLAYKDVVAW  306 (316)
Q Consensus       293 ~~~g~~~~~~~~~~  306 (316)
                       ...|+...++.+.
T Consensus       102 -l~KP~~~~~L~~~  114 (139)
T d1w25a1         102 -LTKPIDDVMLFAR  114 (139)
T ss_dssp             -EESSCCHHHHHHH
T ss_pred             -EECCCCHHHHHHH
Confidence             3456666666543

>d1trea_ c.1.1.1 (A:) Triosephosphate isomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Escherichia coli [TaxId: 562]

Probab=81.54  E-value=1  Score=38.22  Aligned_cols=149  Identities=13%  Similarity=0.046  Sum_probs=78.5

Q ss_pred             HHHHHHHcCCCEEEeCCeeecC--CCCCHHHHHHHHHHhcC-ceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHH
Q 021156          146 NSLSYIEEGATHVIVTSYVFNN--GQMDLERLKDLVRVVGK-QRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDF  222 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~~~~~--~~~~~eli~ei~~~~G~-~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~  222 (316)
                      .+..+.+.||+.++||=.-++.  ++-|-..-+++....-. =..++++.=..     .-+-.+-..   .-+.+..+..
T Consensus        79 Sa~mlkd~G~~~viiGHSERR~~~~E~~~~i~~K~~~al~~~l~pIlCvGE~~-----~~r~~~~~~---~~~~~Ql~~~  150 (255)
T d1trea_          79 SAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETE-----AENEAGKTE---EVCARQIDAV  150 (255)
T ss_dssp             CHHHHHHHTCCEEEESCHHHHHHSCCCHHHHHHHHHHHHHTTCEEEEEECCCH-----HHHHTTCHH---HHHHHHHHHH
T ss_pred             hHHHHHHhccchhhhccccccccccccCHHHHHHHHHHHhhheeeEEecccch-----hhhcchhhh---hhhhhhhhhh
Confidence            3778889999999999654332  22223333444433311 23455553210     000000000   0011111111


Q ss_pred             H-HcC---CC--EEEEeecCCccccCCCCHHHHHHH----hhc---------CCCcEEEEeCCCCHHHHHHHHHhCCCcC
Q 021156          223 L-ASY---AD--EFLVHGVDVEGKKLGIDDELVALL----GKY---------SPIPVTYAGGVTTMADLEKIKVAGIGRV  283 (316)
Q Consensus       223 ~-~~G---a~--~ilvtdi~~dG~~~G~d~eli~~l----~~~---------~~iPVIasGGI~s~eDi~~l~~~G~g~~  283 (316)
                      . ..+   .+  -|-|=.+..-||..-+..+.+.++    ++.         -++||+|+|.|.. +.+.+++... +++
T Consensus       151 ~~~~~~~~~~~iiIAYEPvWAIGtG~~a~~~~~~~~~~~ir~~l~~~~~~~~~~v~iLYGGSV~~-~N~~~i~~~~-~vd  228 (255)
T d1trea_         151 LKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAKVDANIAEQVIIQYGGSVNA-SNAAELFAQP-DID  228 (255)
T ss_dssp             HHHHCGGGGTTCEEEECCGGGSSSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECSCCCT-TTHHHHHTST-TCC
T ss_pred             hcccchhhccCcEEEecchhhcccccccCcchhhhhHHHHHHHHhhhchhhcCCccEEecCCcCH-hHHHHHhcCC-CCC
Confidence            1 112   12  244788899999877765433332    211         2579999998877 5577777665 599


Q ss_pred             EEEEccchhhccCcccHHHHHHHH
Q 021156          284 DVTVGSALDIFGGNLAYKDVVAWH  307 (316)
Q Consensus       284 gVivG~Al~~~~g~~~~~~~~~~~  307 (316)
                      |+.||+|-  .. .-.|..+.+.+
T Consensus       229 G~LVGgAS--l~-~~~F~~Ii~~~  249 (255)
T d1trea_         229 GALVGGAS--LK-ADAFAVIVKAA  249 (255)
T ss_dssp             EEEESGGG--GC-HHHHHHHHHHH
T ss_pred             EEEechhh--cC-HHHHHHHHHHH
Confidence            99999998  53 33344555433

>d1k68a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpA [TaxId: 1188]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator for cyanobacterial phytochrome
species: Calothrix sp. pcc 7601, RcpA [TaxId: 1188]

Probab=81.43  E-value=2.7  Score=31.62  Aligned_cols=67  Identities=12%  Similarity=0.058  Sum_probs=49.3

Q ss_pred             EEEeecCCccccCCCCHHHHHHHhhc---CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhhccCcccHHHHHHH
Q 021156          230 FLVHGVDVEGKKLGIDDELVALLGKY---SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDIFGGNLAYKDVVAW  306 (316)
Q Consensus       230 ilvtdi~~dG~~~G~d~eli~~l~~~---~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~~~g~~~~~~~~~~  306 (316)
                      +++.|+.--++ .|  +++++++++.   .++|||+--+-.+.++..++++.|  +++      +  ...|++.+++.+.
T Consensus        58 lillD~~mP~~-dG--~el~~~ir~~~~~~~iPvI~ls~~~~~~~~~~a~~~G--a~~------y--l~KP~~~~~L~~~  124 (140)
T d1k68a_          58 LILLDLNLPKK-DG--REVLAEIKSDPTLKRIPVVVLSTSINEDDIFHSYDLH--VNC------Y--ITKSANLSQLFQI  124 (140)
T ss_dssp             EEEECSSCSSS-CH--HHHHHHHHHSTTGGGSCEEEEESCCCHHHHHHHHHTT--CSE------E--EECCSSHHHHHHH
T ss_pred             EEEEeeccccc-cC--hHHHHHHHhCcccCCCcEEEEeCCCCHHHHHHHHHCC--CCE------E--EECCCCHHHHHHH
Confidence            56688765433 33  6888888753   368999999999999999999998  543      3  4567778887765


Q ss_pred             HHh
Q 021156          307 HAQ  309 (316)
Q Consensus       307 ~~~  309 (316)
                      .++
T Consensus       125 i~~  127 (140)
T d1k68a_         125 VKG  127 (140)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: HpcH/HpaI aldolase
domain: 2-dehydro-3-deoxy-galactarate aldolase
species: Escherichia coli [TaxId: 562]

Probab=80.94  E-value=14  Score=30.67  Aligned_cols=180  Identities=15%  Similarity=0.059  Sum_probs=98.0

Q ss_pred             cCHHHHHHHHHHcCCCcceEEEecCCcccHHHHHHHHH---hCCCcEEEecCCC-HHHHHHHHHcCCCEEEeCCeeecCC
Q 021156           93 KSAAEFANLYKEDGLTGGHAIMLGADPLSKAAAIEALH---AYPGGLQVGGGIN-SDNSLSYIEEGATHVIVTSYVFNNG  168 (316)
Q Consensus        93 ~~p~e~a~~~~~~G~~~l~lvDLda~~~~~~~i~~~v~---~~~~pl~vGGGIr-~e~~~~~l~~Gad~VVigt~~~~~~  168 (316)
                      .+|. +++.+...|+|+ .++|++=+..+...+...++   ..+++..|==--. ...++++|++||+-|++-.  .++ 
T Consensus        25 ~~p~-~~ei~a~~G~Df-v~iD~EHg~~~~~~~~~~i~a~~~~g~~~~VRvp~~~~~~i~~~LD~Ga~GIivP~--v~s-   99 (253)
T d1dxea_          25 SNPI-STEVLGLAGFDW-LVLDGEHAPNDISTFIPQLMALKGSASAPVVRVPTNEPVIIKRLLDIGFYNFLIPF--VET-   99 (253)
T ss_dssp             CSHH-HHHHHTTSCCSE-EEEESSSSSCCHHHHHHHHHHTTTCSSEEEEECSSSCHHHHHHHHHTTCCEEEESC--CCS-
T ss_pred             CCHH-HHHHHHcCCCCE-EEEecccCCCChhHHHHHHHHHhccCCCceecCCCCCHHHHHHHHhcCccEEEecc--cCC-
Confidence            5786 888898899875 56788755445555555544   3444433322223 5779999999999999854  344 


Q ss_pred             CCCHHHHHHHHHH--hcCc--eEEEeeeeeec------------CCeeEEEeCCcceecccCHHHHHHHHH-HcCCCEEE
Q 021156          169 QMDLERLKDLVRV--VGKQ--RLVLDLSCRKK------------DGKYAIVTDRWQKFSDVYLDERVLDFL-ASYADEFL  231 (316)
Q Consensus       169 ~~~~eli~ei~~~--~G~~--~IvvslD~k~~------------~g~~~v~~~gw~~~~~~~~~e~a~~~~-~~Ga~~il  231 (316)
                         ++-++++++.  |++.  |-. +--.+..            +.+-.+..    .-.....++-+.+.. -.|++.+.
T Consensus       100 ---~eea~~~v~~~~ypP~G~Rg~-~~~~~~~~~~~~~~~~~~~n~~~~vi~----~IEt~~av~nleeI~av~giD~i~  171 (253)
T d1dxea_         100 ---KEEAELAVASTRYPPEGIRGV-SVSHRANMFGTVADYFAQSNKNITILV----QIESQQGVDNVDAIAATEGVDGIF  171 (253)
T ss_dssp             ---HHHHHHHHHTTSCTTTCCCCC-CSSSGGGGGGTSTTHHHHHTTSCEEEE----EECSHHHHHTHHHHHTSTTCCEEE
T ss_pred             ---HHHHHHHHHhheeCCCCCcCc-CcceeccccccccccccccccceEEEe----ecccHHHHHHHHHHhccCCCceEE
Confidence               7888888865  3221  110 0000000            00000000    001112233333333 35899887


Q ss_pred             E--eec----CCccccCCCCH-HHHHHHh---hcCCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEcc
Q 021156          232 V--HGV----DVEGKKLGIDD-ELVALLG---KYSPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGS  289 (316)
Q Consensus       232 v--tdi----~~dG~~~G~d~-eli~~l~---~~~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~  289 (316)
                      +  .|.    ...|....+++ +.++++.   +..++|+-.-  ..+.+++.++.+.|  +.-+++|+
T Consensus       172 iGp~DLs~slG~~g~~~~p~v~~ai~~v~~~~~~~gk~~g~~--~~~~~~~~~~~~~G--~~~i~~g~  235 (253)
T d1dxea_         172 VGPSDLAAALGHLGNASHPDVQKAIQHIFNRASAHGKPSGIL--APVEADARRYLEWG--ATFVAVGS  235 (253)
T ss_dssp             ECHHHHHHHTTCTTCTTSHHHHHHHHHHHHHHHHTTCCEEEE--CCSHHHHHHHHHTT--CCEEEEEE
T ss_pred             EecCcHHhhccCCCCCCChhHHHHHHHHHHHHHHcCCCeEEe--cCCHHHHHHHHHcC--CCEEEehH
Confidence            6  333    22233333322 3445543   3346666433  46899999999999  77777775

>d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Sinorhizobium meliloti, CheY2 [TaxId: 382]

Probab=80.70  E-value=7.5  Score=28.42  Aligned_cols=79  Identities=6%  Similarity=-0.012  Sum_probs=56.0

Q ss_pred             HHHHHHHHcCCCEEEEeecCCccccCCCCHHHHHHHhhc---CCCcEEEEeCCCCHHHHHHHHHhCCCcCEEEEccchhh
Q 021156          217 ERVLDFLASYADEFLVHGVDVEGKKLGIDDELVALLGKY---SPIPVTYAGGVTTMADLEKIKVAGIGRVDVTVGSALDI  293 (316)
Q Consensus       217 e~a~~~~~~Ga~~ilvtdi~~dG~~~G~d~eli~~l~~~---~~iPVIasGGI~s~eDi~~l~~~G~g~~gVivG~Al~~  293 (316)
                      +....+.+...+ +++.|+.--+. .  -+++++++++.   .++|+|+--+-.+.++..++++.|  ++      .+  
T Consensus        42 ~al~~l~~~~~d-lii~D~~mP~~-~--G~el~~~lr~~~~~~~~pii~lt~~~~~~~~~~a~~~G--~~------~~--  107 (129)
T d1p6qa_          42 QGMKIMAQNPHH-LVISDFNMPKM-D--GLGLLQAVRANPATKKAAFIILTAQGDRALVQKAAALG--AN------NV--  107 (129)
T ss_dssp             HHHHHHHTSCCS-EEEECSSSCSS-C--HHHHHHHHTTCTTSTTCEEEECCSCCCHHHHHHHHHHT--CS------CE--
T ss_pred             HHHHHHHhCCCC-eEEeeeecCCC-C--hHHHHHHHHhCcccCCCeEEEEEecCCHHHHHHHHHCC--CC------EE--
Confidence            444445555566 45577654322 2  37889999753   468999888889999999999999  43      35  


Q ss_pred             ccCcccHHHHHHHHHh
Q 021156          294 FGGNLAYKDVVAWHAQ  309 (316)
Q Consensus       294 ~~g~~~~~~~~~~~~~  309 (316)
                      ...|++.+++.+..++
T Consensus       108 l~KP~~~~~L~~~i~~  123 (129)
T d1p6qa_         108 LAKPFTIEKMKAAIEA  123 (129)
T ss_dssp             ECCCSSHHHHHHHHHH
T ss_pred             EECCCCHHHHHHHHHH
Confidence            6788899988876654

>d1b9ba_ c.1.1.1 (A:) Triosephosphate isomerase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Thermotoga maritima [TaxId: 2336]

Probab=80.56  E-value=2  Score=36.35  Aligned_cols=145  Identities=14%  Similarity=0.028  Sum_probs=82.1

Q ss_pred             HHHHHHHcCCCEEEeCCeeecC--CCCCHHHHHHHHHHhcC-ceEEEeeeeeecCCeeEEEeCCcceecccCHHH-HHHH
Q 021156          146 NSLSYIEEGATHVIVTSYVFNN--GQMDLERLKDLVRVVGK-QRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDE-RVLD  221 (316)
Q Consensus       146 ~~~~~l~~Gad~VVigt~~~~~--~~~~~eli~ei~~~~G~-~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e-~a~~  221 (316)
                      .+..+.+.||+.|+||=.-++.  ++-|...-+++....-. =..++++-=...           ....+ ...+ +..+
T Consensus        79 Sa~mL~d~G~~~viiGHSERR~~~~Etd~~i~~K~~~al~~gl~pIlCIGE~~~-----------~r~~g-~t~~~l~~Q  146 (252)
T d1b9ba_          79 SPLMLQEIGVEYVIVGHSERRRIFKEDDEFINRKVKAVLEKGMTPILCVGETLE-----------EREKG-LTFCVVEKQ  146 (252)
T ss_dssp             CHHHHHTTTCCEEEESCHHHHHTSCCCHHHHHHHHHHHHHTTCEEEEEECCCHH-----------HHHHT-CHHHHHHHH
T ss_pred             cHHHHHHhhcchheecchhhhhhhcccCHHHHHHHHHHHHCCCeEEEEecccch-----------hhhcc-chHHHHHHH
Confidence            3777889999999999654432  33333344455444411 234555531100           00011 1112 1222


Q ss_pred             HHH--cCC------C-EEEEeecCCccccCCCCHHHHHH-------H-hhcC------CCcEEEEeCCCCHHHHHHHHHh
Q 021156          222 FLA--SYA------D-EFLVHGVDVEGKKLGIDDELVAL-------L-GKYS------PIPVTYAGGVTTMADLEKIKVA  278 (316)
Q Consensus       222 ~~~--~Ga------~-~ilvtdi~~dG~~~G~d~eli~~-------l-~~~~------~iPVIasGGI~s~eDi~~l~~~  278 (316)
                      +..  .+.      . -|-|-.+.+-||..-++.+.+.+       . .+..      ++||+|+|.|.. +.+.+++..
T Consensus       147 l~~~l~~~~~~~~~~iiIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~~i~ilYGGSV~~-~N~~~i~~~  225 (252)
T d1b9ba_         147 VREGFYGLDKEEAKRVVIAYEPVWAIGTGRVATPQQAQEVHAFIRKLLSEMYDEETAGSIRILYGGSIKP-DNFLGLIVQ  225 (252)
T ss_dssp             HHHHHTTCCHHHHTTCEEEECCGGGSSSSCCCCHHHHHHHHHHHHHHHHHHSCHHHHHHSEEEEESSCCH-HHHTTTSSS
T ss_pred             HHhhhcccchhcccceEEEeccccccccccCCChHHHHHHHHHHHHHHHHhccccccCcccEEEcCCCCH-HHHHHHhcC
Confidence            221  122      1 23378899999988887664433       2 1211      478999888764 678888776


Q ss_pred             CCCcCEEEEccchhhccCcccHHHHHHHHH
Q 021156          279 GIGRVDVTVGSALDIFGGNLAYKDVVAWHA  308 (316)
Q Consensus       279 G~g~~gVivG~Al~~~~g~~~~~~~~~~~~  308 (316)
                      . ++||+.||.|-  +. + .|-++.+.++
T Consensus       226 ~-~vDG~LVGgAS--L~-~-~F~~I~~~~~  250 (252)
T d1b9ba_         226 K-DIDGGLVGGAS--LK-E-SFIELARIMR  250 (252)
T ss_dssp             T-TCCEEEESGGG--TS-T-HHHHHHHHHT
T ss_pred             C-CCCEEEeechh--CC-H-HHHHHHHHHh
Confidence            5 59999999999  75 3 5666665543

>d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=80.46  E-value=2.5  Score=35.68  Aligned_cols=123  Identities=11%  Similarity=0.034  Sum_probs=74.5

Q ss_pred             CcEEEecCCC---H-HHHHHHHHcCCCEEEeC-CeeecCCCCCH----HHHHHHHHHhc-CceEEEeeeeeecCCeeEEE
Q 021156          134 GGLQVGGGIN---S-DNSLSYIEEGATHVIVT-SYVFNNGQMDL----ERLKDLVRVVG-KQRLVLDLSCRKKDGKYAIV  203 (316)
Q Consensus       134 ~pl~vGGGIr---~-e~~~~~l~~Gad~VVig-t~~~~~~~~~~----eli~ei~~~~G-~~~IvvslD~k~~~g~~~v~  203 (316)
                      -|+. .|-|.   . +.++.+++.|++-++++ |+-+- ..++.    ++++...+..+ +-.+++.+..-         
T Consensus        12 TPf~-d~~iD~~~~~~~i~~l~~~Gv~Gi~v~GstGE~-~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~---------   80 (295)
T d1o5ka_          12 TPFK-NGELDLESYERLVRYQLENGVNALIVLGTTGES-PTVNEDEREKLVSRTLEIVDGKIPVIVGAGTN---------   80 (295)
T ss_dssp             CCEE-TTEECHHHHHHHHHHHHHTTCCEEEESSGGGTG-GGCCHHHHHHHHHHHHHHHTTSSCEEEECCCS---------
T ss_pred             cCcC-CCcCCHHHHHHHHHHHHHcCCCEEEECeeccch-hhCCHHHHHHHhhhhccccccCCceEeecccc---------
Confidence            3564 66665   2 44788889999987765 44321 11222    33444444432 22344444321         


Q ss_pred             eCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCCC-C---HHHHHHHhhcCCCcEEE------EeCCCCHHHHH
Q 021156          204 TDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLGI-D---DELVALLGKYSPIPVTY------AGGVTTMADLE  273 (316)
Q Consensus       204 ~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G~-d---~eli~~l~~~~~iPVIa------sGGI~s~eDi~  273 (316)
                             +..+..++++.+.+.|++.++++.--    +..+ +   .+.++.+++.+++|++.      +|---+.+.+.
T Consensus        81 -------st~~ai~~a~~A~~~Gad~v~v~pP~----y~~~s~~~i~~~~~~ia~a~~~pi~iYn~P~~~g~~~~~~~~~  149 (295)
T d1o5ka_          81 -------STEKTLKLVKQAEKLGANGVLVVTPY----YNKPTQEGLYQHYKYISERTDLGIVVYNVPGRTGVNVLPETAA  149 (295)
T ss_dssp             -------CHHHHHHHHHHHHHHTCSEEEEECCC----SSCCCHHHHHHHHHHHHTTCSSCEEEEECHHHHSCCCCHHHHH
T ss_pred             -------cHHHHHHHHHHHHHcCCCEEEEeCCC----CCCCCHHHHHHHHHHHHhccCCCeeEEeccchhcccchhHHHH
Confidence                   11257899999999999999876531    1223 2   23566677788999866      36677899999


Q ss_pred             HHHHh
Q 021156          274 KIKVA  278 (316)
Q Consensus       274 ~l~~~  278 (316)
                      ++.+.
T Consensus       150 ~l~~~  154 (295)
T d1o5ka_         150 RIAAD  154 (295)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            98764

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=80.32  E-value=13  Score=30.00  Aligned_cols=151  Identities=14%  Similarity=0.078  Sum_probs=91.8

Q ss_pred             CHHHHHHHHHHcCCCcceEEEecCCc-ccHHHHHHHHHhCCCcEEEecCCC-H-HH----HHHHHHcCCCEEEeCCeeec
Q 021156           94 SAAEFANLYKEDGLTGGHAIMLGADP-LSKAAAIEALHAYPGGLQVGGGIN-S-DN----SLSYIEEGATHVIVTSYVFN  166 (316)
Q Consensus        94 ~p~e~a~~~~~~G~~~l~lvDLda~~-~~~~~i~~~v~~~~~pl~vGGGIr-~-e~----~~~~l~~Gad~VVigt~~~~  166 (316)
                      ....+|..|...|. .+-++-+|.-. ...+.+....+..++|+.+..--. . +.    +......++|.|+|+|+-+.
T Consensus        28 TiAKLA~~~~~~g~-kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~a~~~~~~~~~d~IlIDTaGr~  106 (211)
T d1j8yf2          28 TAGKLAYFYKKKGF-KVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRH  106 (211)
T ss_dssp             HHHHHHHHHHHTTC-CEEEEECCCSSHHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCSC
T ss_pred             HHHHHHHHHHHCCC-ceEEEEeeccccchhHHHHHhccccCcceeecccchhhhHHHHHHHHHhhccCCceEEEecCCcC
Confidence            45678888887774 57888887532 123344444455788888766554 3 22    33345689999999999763


Q ss_pred             C-CC--CCHHHHHHHHHHhcCceEEEeeeeeecCCeeEEEeCCcceecccCHHHHHHHHHHcCCCEEEEeecCCccccCC
Q 021156          167 N-GQ--MDLERLKDLVRVVGKQRLVLDLSCRKKDGKYAIVTDRWQKFSDVYLDERVLDFLASYADEFLVHGVDVEGKKLG  243 (316)
Q Consensus       167 ~-~~--~~~eli~ei~~~~G~~~IvvslD~k~~~g~~~v~~~gw~~~~~~~~~e~a~~~~~~Ga~~ilvtdi~~dG~~~G  243 (316)
                      . .+  ...+.+.++.+...+..+.+-+|.-  .+        .     -........+...+++.+++|-+|.....  
T Consensus       107 ~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~--~~--------~-----~~~~~~~~~~~~~~~~~lI~TKlDet~~~--  169 (211)
T d1j8yf2         107 GYGEEAALLEEMKNIYEAIKPDEVTLVIDAS--IG--------Q-----KAYDLASKFNQASKIGTIIITKMDGTAKG--  169 (211)
T ss_dssp             CTTCHHHHHHHHHHHHHHHCCSEEEEEEEGG--GG--------G-----GHHHHHHHHHHHCTTEEEEEECTTSCSCH--
T ss_pred             ccchhhHHHHHHHHHHhhcCCceEEEEEecc--cC--------c-----chHHHHhhhhcccCcceEEEecccCCCcc--
Confidence            2 11  0123445555566555666666653  11        0     13456667778889999999998876442  


Q ss_pred             CCHHHHHHHhhcCCCcEEEEeC
Q 021156          244 IDDELVALLGKYSPIPVTYAGG  265 (316)
Q Consensus       244 ~d~eli~~l~~~~~iPVIasGG  265 (316)
                         -.+-.+....++|+.+-|.
T Consensus       170 ---G~~l~~~~~~~lPi~~it~  188 (211)
T d1j8yf2         170 ---GGALSAVAATGATIKFIGT  188 (211)
T ss_dssp             ---HHHHHHHHTTTCCEEEEEC
T ss_pred             ---cHHHHHHHHHCcCEEEEeC
Confidence               2222344456889865553

>d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Flavocytochrome b2, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.26  E-value=1.7  Score=39.24  Aligned_cols=69  Identities=19%  Similarity=0.089  Sum_probs=46.6

Q ss_pred             HHHHHHHcCCCcceEEEecCCc-----c---cHHHHHHHHH--h--CCCcEEEecCCCH-HHHHHHHHcCCCEEEeCCee
Q 021156           98 FANLYKEDGLTGGHAIMLGADP-----L---SKAAAIEALH--A--YPGGLQVGGGINS-DNSLSYIEEGATHVIVTSYV  164 (316)
Q Consensus        98 ~a~~~~~~G~~~l~lvDLda~~-----~---~~~~i~~~v~--~--~~~pl~vGGGIr~-e~~~~~l~~Gad~VVigt~~  164 (316)
                      -|......|++++.+..-.+..     .   ..+++...+.  .  -.+||++.||||. -|+-+++..||+.|-+|..+
T Consensus       259 da~~~~~~G~~~i~vsnhggr~~d~~~~~~~~l~~i~~~~~~~~v~~~~~viadGGIR~G~DVaKALALGAdaVgigrp~  338 (414)
T d1kbia1         259 DVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPF  338 (414)
T ss_dssp             HHHHHHHTTCSEEEECCTTTTSSTTCCCHHHHHHHHHHHHHTTTCBTTBEEEEESSCCSHHHHHHHHHHTCSEEEECHHH
T ss_pred             HHHHHHhcCCcceeeccccccccccccccccchhhhhhhhhhhccCCceeEEecCCcCcHHHHHHHHHcCCCEEEEcHHH
Confidence            3444556777766555543321     1   2333444443  1  2489999999996 99999999999999999877


Q ss_pred             ec
Q 021156          165 FN  166 (316)
Q Consensus       165 ~~  166 (316)
                      +.
T Consensus       339 L~  340 (414)
T d1kbia1         339 LY  340 (414)
T ss_dssp             HH
T ss_pred             HH
Confidence            64