Citrus Sinensis ID: 021217

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310------
Protein Sequence
MLPSKVNKSLQKGPAQKPTNFKGQSHLQIPTSLSSLIALLSRIMAATLSLLRLPILAQNQQHSHSQSGSKLSTSTQLNCIRKDSNNQQTLVNETLVRFKSAVLPVTTITLPFLLDTKDALAVNGEFGILEGRSVALVHPIVMGSLLVYTLWAGYLGWQWRRVRTIQTDINELKKQVKPTPVTPDGAPAETAPSPVEIKIQQLTEERKELLKGSYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQKGSETARNLHIALNALNILLFIWQIPTGIDIVFKVLEFTKWP
Secondary Structure (PSIPRED)
cccHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHccccccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEcHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHcccHHHHHccccccEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEccccHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mlpskvnkslqkgpaqkptnfkgqshlqipTSLSSLIALLSRIMAATLSLLRlpilaqnqqhshsqsgsklststqlncirkdsnnqqtLVNETLVRFKsavlpvttitlpflldtkdalavngefgilegrsvaLVHPIVMGSLLVYTLWAGYLGWQWRRVRTIQTDINElkkqvkptpvtpdgapaetapspvEIKIQQLTEERKELLKGsyrdrhynaGSILLGFGVlesvgggvntylragklfpgphlfaGAAITVLWALAAALVPAMQKGSETARNLHIALNALNILLFIWQIPTGIDIVFKVLEFTKWP
Flexible Loop (DISEMBL)
mlpskvnkslqkgpaqkptnfkgqshlqIPTSLSSLIALLSRIMAATLSLLRLPILAQNQqhshsqsgsklstSTQLNCIRKDSNNQQTLVNETLVRFKSAVLPVTTITLPFLLDTKDALAVNGEFGILEGRSVALVHPIVMGSLLVYTLWAGYLGWQWRRVRTIQTDinelkkqvkptpvtpdgapaetapspveIKIQQLTEERKELLKGSYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQKGSETARNLHIALNALNILLFIWQIPTGIDIVFKVLEFTKWP
Low Complexity Region (SEG)
MLPSKVNKSLQKGPAQKPTNFKGQSHLQIPTslssliallsRIMAATLSLLRLPILAqnqqhshsqsgsklststqlNCIRKDSNNQQTLVNETLVRFKSAVLPVTTITLPFLLDTKDALAVNGEFGILEGRSVALVHPIVMGSLLVYTLWAGYLGWQWRRVRTIQTDINELKKQVKPTPVTPDGAPAETAPSPVEIKIQQLTEERKELLKGSYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFagaaitvlwalaaalvpaMQKGSETarnlhialnalnillfiWQIPTGIDIVFKVLEFTKWP
Disordered region (IsUnstruct)
******************************TSLSSLIALLSRIMAATLSLLRLPILA*******************************TLVNETLVRFKSAVLPVTTITLPFLLDTKDALAVNGEFGILEGRSVALVHPIVMGSLLVYTLWAGYLGWQWRRVRTIQTDIN***************************************LKGSYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQKGSETARNLHIALNALNILLFIWQIPTGIDIVFKVLEFTK**
Disordered Region (DISOPRED)
*************************HLQIPTSLSSLIALLSRIMAATLSLLRLP***********************************************VLPVTTITLPFLLDTKDALAVNGEFGILEGRSVALVHPIVMGSLLVYTLWAGYLGWQWRRVRTI********************************************LKGSYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQKGSETARNLHIALNALNILLFIWQIPTGIDIVFKVLEFTKWP
Disordered Region (DISEMBL)
********************FKGQSHLQIPTSLSSLIALLSRIMAATLSLLRLPILAQ*****************QLNCIRKDSNNQQTLVNETLVRFKSAVLPVTTITLPFLLDTKDALAVNGEFGILEGRSVALVHPIVMGSLLVYTLWAGYLGWQWRRVRTIQTDINELKKQVKPTPVTPDGAPAETAPSPVEIKIQQLTEERKELLKGSYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQKGSETARNLHIALNALNILLFIWQIPTGIDIVFKVLEFTKWP
Disordered Region (DISPRO)
*************P**KPT*F*GQSHLQIPTSLSSLIALLSRIMAATLSLLRLPILAQN*********SKLSTSTQLNCIRKDSNNQQTLVNETLVRFKSAVLPVTTITLPFLLDTKDALAVNGEFGILEGRSVALVHPIVMGSLLVYTLWAGYLGWQWRRVRTIQTDINELKKQVKP**************SPVEIKIQQLTEERKELLKGSYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQKGSETARNLHIALNALNILLFIWQIPTGIDIVFKVLEFTKWP
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLPSKVNKSLQKGPAQKPTNFKGQSHLQIPTSLSSLIALLSRIMAATLSLLRLPILAQNQQHSHSQSGSKLSTSTQLNCIRKDSNNQQTLVNETLVRFKSAVLPVTTITLPFLLDTKDALAVNGEFGILEGRSVALVHPIVMGSLLVYTLWAGYLGWQWRRVRTIQTDINELKKQVKPTPVTPDGAPAETAPSPVEIKIQQLTEERKELLKGSYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQKGSETARNLHIALNALNILLFIWQIPTGIDIVFKVLEFTKWP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	316
255638086	272	unknown [Glycine max]	0.832	0.966	0.734	1e-108
388494298	273	unknown [Lotus japonicus]	0.863	1.0	0.706	1e-108
118487789	274	unknown [Populus trichocarpa]	0.860	0.992	0.734	1e-107
255585259	270	conserved hypothetical protein [Ricinus	0.851	0.996	0.704	1e-105
449432022	268	PREDICTED: uncharacterized protein LOC10	0.832	0.981	0.705	1e-105
357512589	265	hypothetical protein MTR_7g117970 [Medic	0.835	0.996	0.697	1e-104
217073364	265	unknown [Medicago truncatula] gi|3885046	0.835	0.996	0.689	1e-103
356573253	277	PREDICTED: uncharacterized protein LOC10	0.857	0.978	0.734	1e-102
225453555	273	PREDICTED: uncharacterized protein LOC10	0.857	0.992	0.723	2e-98
224127995	199	predicted protein [Populus trichocarpa]	0.629	1.0	0.839	3e-95

>gi|255638086|gb|ACU19357.1| unknown [Glycine max]

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/282 (73%), Positives = 230/282 (81%), Gaps = 19/282 (6%)

Query: 44  MAATLSLLRLPILAQNQQHSHSQSGSKL----STSTQLNCIRKD----SNNQQTLVNETL 95
           MAATL+LL+LPIL  N+      S SKL    S  ++LN I KD     NN   L     
Sbjct: 1   MAATLTLLKLPILP-NKPLLPRPSTSKLFPLPSIYSKLN-IPKDYIVSPNNIDAL----- 53

Query: 96  VRFKSAVLPVTTITLPFLLDTKDALAVNGEFGILEGRSVALVHPIVMGSLLVYTLWAGYL 155
              K A L ++ IT P LL+TKDALAV GEFGILEGRS AL+HPIVMGS  +YTLWAGYL
Sbjct: 54  ---KPAFLSLSAITFPLLLETKDALAVGGEFGILEGRSFALIHPIVMGSFFLYTLWAGYL 110

Query: 156 GWQWRRVRTIQTDINELKKQVKPTPVTPDGAPAETA-PSPVEIKIQQLTEERKELLKGSY 214
           GWQWRRVRTIQ DIN+LKKQVKPTPVTPDG P E A PSPVE++IQQLTEERKEL+KGSY
Sbjct: 111 GWQWRRVRTIQNDINDLKKQVKPTPVTPDGKPVEEASPSPVELQIQQLTEERKELIKGSY 170

Query: 215 RDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQ 274
           +DRH+NAGSILLGFGVLES+GGGVNT+ R GKLFPGPHLFAGAAITVLWALAAALVP+MQ
Sbjct: 171 KDRHFNAGSILLGFGVLESIGGGVNTWFRTGKLFPGPHLFAGAAITVLWALAAALVPSMQ 230

Query: 275 KGSETARNLHIALNALNILLFIWQIPTGIDIVFKVLEFTKWP 316
           KG+ETARNLHIALNA+N+LLF+WQIPTGIDIVFKV EFT WP
Sbjct: 231 KGNETARNLHIALNAVNVLLFVWQIPTGIDIVFKVFEFTTWP 272

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388494298|gb|AFK35215.1| unknown [Lotus japonicus]

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/273 (70%), Positives = 221/273 (80%)

Query: 44  MAATLSLLRLPILAQNQQHSHSQSGSKLSTSTQLNCIRKDSNNQQTLVNETLVRFKSAVL 103
           MAATLSLL+LPIL    + S S+       S +L+  +   N Q+ L        K A L
Sbjct: 1   MAATLSLLKLPILPNKPRQSTSKLVPIPYISAKLDTPKDFPNPQKLLDQNANALLKHASL 60

Query: 104 PVTTITLPFLLDTKDALAVNGEFGILEGRSVALVHPIVMGSLLVYTLWAGYLGWQWRRVR 163
            +T +T PFLL+ KDALAV GEFGILEGR+ AL+HPIV+G L  YTL+AGYLGWQWRRVR
Sbjct: 61  SLTAVTFPFLLEPKDALAVGGEFGILEGRTFALIHPIVLGGLFFYTLYAGYLGWQWRRVR 120

Query: 164 TIQTDINELKKQVKPTPVTPDGAPAETAPSPVEIKIQQLTEERKELLKGSYRDRHYNAGS 223
           T Q +INELKKQ+KP PVTPDG P ETAPSPVE+KIQQLTEERKEL+KGSYR++H+NAGS
Sbjct: 121 TTQNEINELKKQIKPAPVTPDGKPVETAPSPVELKIQQLTEERKELIKGSYREKHFNAGS 180

Query: 224 ILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQKGSETARNL 283
           ILLGFGV E+VGGG++T+LR GKLFPGPHLFAGA ITVLWALAAALVP MQKGSETARNL
Sbjct: 181 ILLGFGVFEAVGGGLDTWLRTGKLFPGPHLFAGAGITVLWALAAALVPPMQKGSETARNL 240

Query: 284 HIALNALNILLFIWQIPTGIDIVFKVLEFTKWP 316
           HIALN LN+LLFIWQIPTG++IV KV EFTKWP
Sbjct: 241 HIALNTLNVLLFIWQIPTGLEIVLKVFEFTKWP 273

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118487789|gb|ABK95718.1| unknown [Populus trichocarpa]

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 202/275 (73%), Positives = 231/275 (84%), Gaps = 3/275 (1%)

Query: 44  MAATLSLLRLPILAQ--NQQHSHSQSGSKLSTSTQLNCIRKDSNNQQTLVNETLVRFKSA 101
           MA TL LL  PILAQ  N    HS+    LS S++L+  +KDS++ + L  ET+    SA
Sbjct: 1   MATTLGLLNFPILAQKNNTPFIHSKM-PLLSNSSKLDVCKKDSHSPRKLFTETIQHLSSA 59

Query: 102 VLPVTTITLPFLLDTKDALAVNGEFGILEGRSVALVHPIVMGSLLVYTLWAGYLGWQWRR 161
            L   ++ LPFLLDTKDALAV GEFGILEGRS AL+HPIVMG LL YTLWAGYLGWQWRR
Sbjct: 60  SLSPASLALPFLLDTKDALAVGGEFGILEGRSFALIHPIVMGGLLFYTLWAGYLGWQWRR 119

Query: 162 VRTIQTDINELKKQVKPTPVTPDGAPAETAPSPVEIKIQQLTEERKELLKGSYRDRHYNA 221
           VRT Q +I+ELK+QVKPTPVTP+G P E APSPVE+KIQQL+EERKEL+KGSYRDRH+NA
Sbjct: 120 VRTTQNEISELKRQVKPTPVTPEGTPVEAAPSPVELKIQQLSEERKELIKGSYRDRHFNA 179

Query: 222 GSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQKGSETAR 281
           GSILLGFGV E++GGGVNT+LR GKLFPGPHLFAGA ITVLWA AAALVPAMQKG+ETAR
Sbjct: 180 GSILLGFGVFEAIGGGVNTWLRTGKLFPGPHLFAGAGITVLWAAAAALVPAMQKGNETAR 239

Query: 282 NLHIALNALNILLFIWQIPTGIDIVFKVLEFTKWP 316
           +LHIALNA+N++LF+WQIPTGIDIVFKV EFTKWP
Sbjct: 240 SLHIALNAINVVLFLWQIPTGIDIVFKVFEFTKWP 274

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585259|ref|XP_002533330.1| conserved hypothetical protein [Ricinus communis] gi|223526835|gb|EEF29051.1| conserved hypothetical protein [Ricinus communis]

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 193/274 (70%), Positives = 224/274 (81%), Gaps = 5/274 (1%)

Query: 44  MAATLSLLRLPILAQNQQHSHSQSGSKLSTSTQLNCIRKDSNNQQTLVNETLVRF-KSAV 102
           MA TL+LLR P+LA+   + HS+  S L   ++L+  +K+S+    L+NE + +   SA 
Sbjct: 1   MATTLTLLRSPVLARKLPYIHSKFPS-LPKPSKLDLSKKESSK---LLNENIHQLISSAS 56

Query: 103 LPVTTITLPFLLDTKDALAVNGEFGILEGRSVALVHPIVMGSLLVYTLWAGYLGWQWRRV 162
           LP+T  +LP  LD KDA AV GEFGILEG++ AL+HP VMG L  YTLWAGYLGWQWRRV
Sbjct: 57  LPITAFSLPLFLDAKDAFAVGGEFGILEGKTFALIHPAVMGLLFFYTLWAGYLGWQWRRV 116

Query: 163 RTIQTDINELKKQVKPTPVTPDGAPAETAPSPVEIKIQQLTEERKELLKGSYRDRHYNAG 222
           RTIQ +I+ELKKQVKP  VTPDG P E  PSPVE+KIQQLTEERKEL+KGSY+DRH+NAG
Sbjct: 117 RTIQNEISELKKQVKPAAVTPDGKPVEAPPSPVELKIQQLTEERKELIKGSYKDRHFNAG 176

Query: 223 SILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQKGSETARN 282
           SILLGFGVLES+GGG+NT+ R GKLFPGPHLFAGA ITVLWA AAALVPAMQKG+ETARN
Sbjct: 177 SILLGFGVLESIGGGLNTWFRTGKLFPGPHLFAGAGITVLWAAAAALVPAMQKGNETARN 236

Query: 283 LHIALNALNILLFIWQIPTGIDIVFKVLEFTKWP 316
           LHIALNALN+LLFIWQIPTG +IV KV EFTKWP
Sbjct: 237 LHIALNALNVLLFIWQIPTGFEIVLKVFEFTKWP 270

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432022|ref|XP_004133799.1| PREDICTED: uncharacterized protein LOC101206421 [Cucumis sativus] gi|449477966|ref|XP_004155178.1| PREDICTED: uncharacterized LOC101206421 [Cucumis sativus]

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 196/278 (70%), Positives = 218/278 (78%), Gaps = 15/278 (5%)

Query: 44  MAATLSLLRLPILAQNQQHSHSQSGSKLS-----TSTQLNCIRKDSNNQQTLVNETLVRF 98
           MA TLSL +LP       H    S SKL      T+  L+   K SNN   L  +T+   
Sbjct: 1   MAITLSLPKLP-------HKTPISSSKLPIPSIPTNLVLSQNPKCSNN---LFIQTVQNL 50

Query: 99  KSAVLPVTTITLPFLLDTKDALAVNGEFGILEGRSVALVHPIVMGSLLVYTLWAGYLGWQ 158
           K   +P+T +TLPF L  +DALAV GEFGILEGRS AL+HP+VMG L VYTLWAGYLGWQ
Sbjct: 51  KPYTIPLTALTLPFFLHPQDALAVGGEFGILEGRSFALIHPLVMGGLFVYTLWAGYLGWQ 110

Query: 159 WRRVRTIQTDINELKKQVKPTPVTPDGAPAETAPSPVEIKIQQLTEERKELLKGSYRDRH 218
           WRRVRT+Q +INELKKQV P  VTPDG P E  PSP E+KIQQLTEERKEL+KGS+RDRH
Sbjct: 111 WRRVRTVQNEINELKKQVAPAAVTPDGKPVEAPPSPTELKIQQLTEERKELIKGSFRDRH 170

Query: 219 YNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQKGSE 278
           +NAGSILLGFGVLE++GGGVNT+ R GKLFPGPHLFAGA ITVLWALAAALVPAMQKG+E
Sbjct: 171 FNAGSILLGFGVLEAIGGGVNTWFRTGKLFPGPHLFAGAGITVLWALAAALVPAMQKGNE 230

Query: 279 TARNLHIALNALNILLFIWQIPTGIDIVFKVLEFTKWP 316
           TARNLHIALN LN+LLFIWQIPTGIDIV KV EFTKWP
Sbjct: 231 TARNLHIALNTLNVLLFIWQIPTGIDIVLKVFEFTKWP 268

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357512589|ref|XP_003626583.1| hypothetical protein MTR_7g117970 [Medicago truncatula] gi|355501598|gb|AES82801.1| hypothetical protein MTR_7g117970 [Medicago truncatula]

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/274 (69%), Positives = 222/274 (81%), Gaps = 10/274 (3%)

Query: 44  MAATLSLLRLPILAQNQQHSHSQSGSKLSTSTQLNCIRKDSNNQQTLVNETLVRFKSAVL 103
           MA+TLSL++LPIL+  +     QS SK          +K S + Q  + +T      ++L
Sbjct: 1   MASTLSLIKLPILSSIKPR---QSTSKHVVPLPSKFPQKFSLDHQINIKQT------SLL 51

Query: 104 PVTTITLPFLLDTKDALAVNGEFGILEGRSVALVHPIVMGSLLVYTLWAGYLGWQWRRVR 163
            +T IT PFLLDTKDALA  GEFGI EGR+ AL+HPIV+G L  YTL+AGYLGWQWRRVR
Sbjct: 52  SLTAITFPFLLDTKDALAAGGEFGIFEGRTFALIHPIVLGGLFFYTLYAGYLGWQWRRVR 111

Query: 164 TIQTDINELKKQVKPTPVTPDGAPAETAP-SPVEIKIQQLTEERKELLKGSYRDRHYNAG 222
           TIQ DINELKKQ+KP PVTPDG   ET+P SPVE++IQ+LTEERKEL+KGSYRD+H+NAG
Sbjct: 112 TIQNDINELKKQLKPAPVTPDGKALETSPASPVELEIQKLTEERKELIKGSYRDKHFNAG 171

Query: 223 SILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQKGSETARN 282
           SILLGFGV E+VGGG+NT+LR GKLFPGPHLFAGA ITVLWALAAALVP MQKGSETARN
Sbjct: 172 SILLGFGVFEAVGGGLNTWLRTGKLFPGPHLFAGAGITVLWALAAALVPPMQKGSETARN 231

Query: 283 LHIALNALNILLFIWQIPTGIDIVFKVLEFTKWP 316
           LHIALN LN+LLF+WQIPTG+DIV+KV EFTKWP
Sbjct: 232 LHIALNTLNVLLFMWQIPTGLDIVWKVFEFTKWP 265

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073364|gb|ACJ85041.1| unknown [Medicago truncatula] gi|388504662|gb|AFK40397.1| unknown [Medicago truncatula]

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 189/274 (68%), Positives = 221/274 (80%), Gaps = 10/274 (3%)

Query: 44  MAATLSLLRLPILAQNQQHSHSQSGSKLSTSTQLNCIRKDSNNQQTLVNETLVRFKSAVL 103
           MA+TLSL++LPIL+  +     QS SK          +K S + Q  + +T      ++L
Sbjct: 1   MASTLSLIKLPILSSIKPR---QSTSKHVVPLPSKFPQKFSLDHQINIKQT------SLL 51

Query: 104 PVTTITLPFLLDTKDALAVNGEFGILEGRSVALVHPIVMGSLLVYTLWAGYLGWQWRRVR 163
            +T IT PFLLDTKDALA  GEFGI EGR+ AL+HPIV+G L  YTL+AGYLGWQWRRV+
Sbjct: 52  SLTAITFPFLLDTKDALAAGGEFGIFEGRTFALIHPIVLGGLFFYTLYAGYLGWQWRRVK 111

Query: 164 TIQTDINELKKQVKPTPVTPDGAPAETAP-SPVEIKIQQLTEERKELLKGSYRDRHYNAG 222
           TIQ DINELKKQ+KP PVTPDG   ET+P SPVE++IQ+LTEERKEL+KGSYRD+H+NAG
Sbjct: 112 TIQNDINELKKQLKPAPVTPDGKALETSPASPVELEIQKLTEERKELIKGSYRDKHFNAG 171

Query: 223 SILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQKGSETARN 282
           SILLGFGV E+VGGG+NT+LR GKLFPGPHLFAGA ITVLWALAAALVP MQKGSETARN
Sbjct: 172 SILLGFGVFEAVGGGLNTWLRTGKLFPGPHLFAGAGITVLWALAAALVPPMQKGSETARN 231

Query: 283 LHIALNALNILLFIWQIPTGIDIVFKVLEFTKWP 316
           LHIALN L +LLF+WQIPTG+DIV+KV EFTKWP
Sbjct: 232 LHIALNTLKVLLFMWQIPTGLDIVWKVFEFTKWP 265

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573253|ref|XP_003554777.1| PREDICTED: uncharacterized protein LOC100798854 [Glycine max]

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/279 (73%), Positives = 231/279 (82%), Gaps = 8/279 (2%)

Query: 44  MAATLSLLRLPILAQNQQHSHSQSGSKL----STSTQLNCIRKDSNNQQ-TLVNETLVRF 98
           MAATL+LL+LPIL  N+      S SKL    S  ++LN I KDSN Q    +++ +   
Sbjct: 1   MAATLTLLKLPILP-NKPLLPRPSTSKLVPFPSIYSKLN-IPKDSNPQNLPFLDQNIDAL 58

Query: 99  KSAVLPVTTITLPFLLDTKDALAVNGEFGILEGRSVALVHPIVMGSLLVYTLWAGYLGWQ 158
           K   L ++ I+ P LL+TKDALAV GEFGILEGRS AL+HPIVMGS  +YTLWAGYLGWQ
Sbjct: 59  KPVFLSLSAISFPLLLETKDALAVGGEFGILEGRSFALIHPIVMGSFFLYTLWAGYLGWQ 118

Query: 159 WRRVRTIQTDINELKKQVKPTPVTPDGAPAE-TAPSPVEIKIQQLTEERKELLKGSYRDR 217
           WRRVRTIQ DINELKKQVKP PVTPDG P E  APSPVE++IQQLTEERKEL+KGSY+DR
Sbjct: 119 WRRVRTIQNDINELKKQVKPNPVTPDGKPVEEAAPSPVELQIQQLTEERKELIKGSYKDR 178

Query: 218 HYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQKGS 277
           H+NAGSILLGFGVLESVGGGVNT+ R GKLFPGPHLFAGAAIT LWALAAALVP+MQKG+
Sbjct: 179 HFNAGSILLGFGVLESVGGGVNTWFRTGKLFPGPHLFAGAAITALWALAAALVPSMQKGN 238

Query: 278 ETARNLHIALNALNILLFIWQIPTGIDIVFKVLEFTKWP 316
           ETARNLHIALNA+N+LLF+WQIPTGIDIVFKV EFT WP
Sbjct: 239 ETARNLHIALNAVNVLLFVWQIPTGIDIVFKVFEFTTWP 277

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453555|ref|XP_002262754.1| PREDICTED: uncharacterized protein LOC100250645 [Vitis vinifera] gi|296088978|emb|CBI38681.3| unnamed protein product [Vitis vinifera]

 Score =  365 bits (936), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 199/275 (72%), Positives = 229/275 (83%), Gaps = 4/275 (1%)

Query: 44  MAATLSLLRLPILAQNQQHSHSQSGSKLSTSTQLNCIRKDSNNQQTLVNETLVRFKSAVL 103
           MA TLSLLRL I++Q    +HS+  ++   +   + I + S + Q L++ET  R KSA L
Sbjct: 1   MATTLSLLRLSIVSQKSHQTHSKLVNR--PNPVRSVISQHSLDPQRLLSETTHRLKSAAL 58

Query: 104 PVTTITLPFLLDTKDALAVNGEFGILEGRSVALVHPIVMGSLLVYTLWAGYLGWQWRRVR 163
           P+T +TLPFLLD+KDALAV GEFGILEGR++AL+HPIVMGSL  YTLWAGYLGWQWRRVR
Sbjct: 59  PLTALTLPFLLDSKDALAVGGEFGILEGRTLALIHPIVMGSLFFYTLWAGYLGWQWRRVR 118

Query: 164 TIQTDINELKKQVKPTPVTPDGAPAETAPSP--VEIKIQQLTEERKELLKGSYRDRHYNA 221
           TIQ +INELKKQV+P  VTP+G+P   AP P  +E KIQQLTEERKEL+KGS+RDRH+NA
Sbjct: 119 TIQNEINELKKQVRPVAVTPEGSPPAEAPPPSPIEAKIQQLTEERKELIKGSFRDRHFNA 178

Query: 222 GSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQKGSETAR 281
           GSILLGFGV ES+GGGVNT+ R GKLFPGPHLFAGAAIT LWA AAALVPAMQKG+ETAR
Sbjct: 179 GSILLGFGVFESIGGGVNTWFRTGKLFPGPHLFAGAAITALWAAAAALVPAMQKGNETAR 238

Query: 282 NLHIALNALNILLFIWQIPTGIDIVFKVLEFTKWP 316
           NLHIALN LN+LLFIWQIPTGIDIVFKV EFT WP
Sbjct: 239 NLHIALNGLNVLLFIWQIPTGIDIVFKVFEFTNWP 273

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127995|ref|XP_002320215.1| predicted protein [Populus trichocarpa] gi|222860988|gb|EEE98530.1| predicted protein [Populus trichocarpa]

 Score =  354 bits (908), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 167/199 (83%), Positives = 185/199 (92%)

Query: 118 DALAVNGEFGILEGRSVALVHPIVMGSLLVYTLWAGYLGWQWRRVRTIQTDINELKKQVK 177
           DALAV GEFGILEGRS AL+HPIVMG LL YTLWAGYLGWQWRRVRT Q +I+ELK+QVK
Sbjct: 1   DALAVGGEFGILEGRSFALIHPIVMGGLLFYTLWAGYLGWQWRRVRTTQNEISELKRQVK 60

Query: 178 PTPVTPDGAPAETAPSPVEIKIQQLTEERKELLKGSYRDRHYNAGSILLGFGVLESVGGG 237
           PTPVTP+G P E APSPVE+KIQQL+EERKEL+KGSYRDRH+NAGSILLGFGV E++GGG
Sbjct: 61  PTPVTPEGTPVEAAPSPVELKIQQLSEERKELIKGSYRDRHFNAGSILLGFGVFEAIGGG 120

Query: 238 VNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQKGSETARNLHIALNALNILLFIW 297
           VNT+LR GKLFPGPHLFAGA ITVLWA AAALVPAMQKG+ETAR+LHIALNA+N++LF+W
Sbjct: 121 VNTWLRTGKLFPGPHLFAGAGITVLWAAAAALVPAMQKGNETARSLHIALNAINVVLFLW 180

Query: 298 QIPTGIDIVFKVLEFTKWP 316
           QIPTGIDIVFKV EFTKWP
Sbjct: 181 QIPTGIDIVFKVFEFTKWP 199

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	316
TAIR|locus:2079517	272	AT3G61870 "AT3G61870" [Arabido	0.689	0.801	0.610	3.7e-71

TAIR|locus:2079517 AT3G61870 "AT3G61870" [Arabidopsis thaliana (taxid:3702)]

 Score = 720 (258.5 bits), Expect = 3.7e-71, P = 3.7e-71
 Identities = 135/221 (61%), Positives = 160/221 (72%)

Query:    99 KSAVLPVTTITLPFLLDTKDALAVNGEFGILEGRSVALVHPIVMGSLLVYTLWAGYLGWQ 158
             KS+ LP+  I LPF LD +DA A  GEFGILEGRS AL+HPIVMG L  YTLW GYLGWQ
Sbjct:    52 KSSSLPLAVIALPFFLDPQDAAAAGGEFGILEGRSFALIHPIVMGGLFAYTLWTGYLGWQ 111

Query:   159 WRRVRTIQTDINELKKQVKPTPVTPDGAPA---ETAPSPVEIKIQQLTEERKELLKGSYR 215
             WRRVRTIQ++I++LKKQ+KPTPV+PDG+ A    + PS  E++IQ+LTEERKEL+KGSYR
Sbjct:   112 WRRVRTIQSEISDLKKQLKPTPVSPDGSTAVDSSSPPSTTELQIQRLTEERKELVKGSYR 171

Query:   216 DRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFXXXXXXXXXXXXXXXXXXMQK 275
             D+H++AGS+LLGFGVLE+V GGVNTYLR GKLFPGPHL+                  MQK
Sbjct:   172 DKHFDAGSVLLGFGVLEAVFGGVNTYLRTGKLFPGPHLYAGAGITVLWAAAAALVPAMQK 231

Query:   276 GSETXXXXXXXXXXXXXXXXXWQIPTGIDIVFKVLEFTKWP 316
             G++T                 WQIPTG+DIV KV EFTKWP
Sbjct:   232 GNDTARSLHIALNAVNVLLFIWQIPTGLDIVLKVFEFTKWP 272


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.137   0.409    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      316       251   0.00081  114 3  11 22  0.46    33
                                                     32  0.47    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  601 (64 KB)
  Total size of DFA:  180 KB (2104 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.82u 0.09s 21.91t   Elapsed:  00:00:02
  Total cpu time:  21.82u 0.09s 21.91t   Elapsed:  00:00:02
  Start:  Sat May 11 07:27:44 2013   End:  Sat May 11 07:27:46 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00026129001	SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (273 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00028499001	RecName- Full=Photosystem II reaction center psb28 protein; (179 aa)			•	•					0.694
	GSVIVG00025097001	SubName- Full=Putative uncharacterized protein (Chromosome chr4 scaffold_32, whole genome shotg [...] (221 aa)			•	•					0.690
	GSVIVG00022834001	SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (353 aa)			•	•					0.665
	GSVIVG00035532001	SubName- Full=Chromosome undetermined scaffold_79, whole genome shotgun sequence; (221 aa)			•	•					0.648
	GSVIVG00001938001	SubName- Full=Chromosome chr5 scaffold_124, whole genome shotgun sequence; (229 aa)			•	•					0.648
	GSVIVG00023908001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (126 aa)			•	•					0.629
	GSVIVG00013467001	SubName- Full=Chromosome undetermined scaffold_484, whole genome shotgun sequence; (332 aa)			•	•					0.622
	GSVIVG00014701001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (331 aa)			•	•					0.620
	GSVIVG00028771001	SubName- Full=Chromosome chr13 scaffold_45, whole genome shotgun sequence; (378 aa)			•	•					0.617
	GSVIVG00022574001	SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (207 aa)			•	•					0.598

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	316
pfam13301	144	pfam13301, DUF4079, Protein of unknown function (D	1e-50

>gnl|CDD|222033 pfam13301, DUF4079, Protein of unknown function (DUF4079)

 Score =  164 bits (417), Expect = 1e-50
 Identities = 74/177 (41%), Positives = 91/177 (51%), Gaps = 37/177 (20%)

Query: 135 ALVHPIVMG-SLLVYTLWAGYLGWQWRRVRTIQTDINELKKQVKPTPVTPDGAPAETAPS 193
            L+HP++MG  +     +A YLGWQ RR R                              
Sbjct: 3   WLIHPVLMGLLVFPVGGYAAYLGWQARRRRL----------------------------- 33

Query: 194 PVEIKIQQLTEERKELLKGSYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHL 253
                  +    RKEL+KG +R RHY  GS LL   VL  +GG + TY R GKLF  PHL
Sbjct: 34  ------AENPGTRKELVKGKFRLRHYRLGSALLALMVLGLLGGQLGTYRRNGKLFWSPHL 87

Query: 254 FAGAAITVLWALAAALVPAMQKG-SETARNLHIALNALNILLFIWQIPTGIDIVFKV 309
           +AG A+T L A +AALVP +QKG S  AR LHI LN L +LLF WQ  TG  I+ K+
Sbjct: 88  WAGLAVTGLLAFSAALVPEIQKGNSLWARRLHIGLNVLALLLFAWQAITGTRILLKI 144

This is an uncharacterized family of proteins. Length = 144

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	316
PF13301	175	DUF4079: Protein of unknown function (DUF4079)	100.0
PF03188	137	Cytochrom_B561: Eukaryotic cytochrome b561; InterP	98.45
smart00665	129	B561 Cytochrome b-561 / ferric reductase transmemb	98.31
cd08761	183	Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561	98.18
cd08554	131	Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome	98.05
cd08760	191	Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561),	97.68
cd08763	143	Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB5	97.64
cd08766	144	Cyt_b561_ACYB-1_like Plant cytochrome b(561), incl	97.63
cd08764	214	Cyt_b561_CG1275_like Non-vertebrate eumetazoan cyt	97.45
cd08765	153	Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBR	97.41
KOG1619	245	consensus Cytochrome b [Energy production and conv	97.18
cd08762	179	Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYB	96.98
PLN02680	232	carbon-monoxide oxygenase	96.74
PLN02810	231	carbon-monoxide oxygenase	96.66
PLN02351	242	cytochromes b561 family protein	96.03
PF01292	182	Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPr	91.83
PF00033	188	Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; I	91.49
cd08760	191	Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561),	90.25
PF03188	137	Cytochrom_B561: Eukaryotic cytochrome b561; InterP	89.85
smart00665	129	B561 Cytochrome b-561 / ferric reductase transmemb	88.37
cd08554	131	Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome	86.1
PF13172	34	PepSY_TM_1: PepSY-associated TM helix	85.71
cd08761	183	Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561	85.62
PF00033	188	Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; I	82.65

>PF13301 DUF4079: Protein of unknown function (DUF4079)

Probab=100.00  E-value=2.3e-44  Score=316.66  Aligned_cols=172  Identities=45%  Similarity=0.657  Sum_probs=155.2

Q ss_pred             ehhhhhHHHHHH-HHHHHHHHHHhhheeeeeccccchHHHhhhcCCCCCCCCCCCCCCCCChhHHHHHhhHHHHHHHhhh
Q 021217          134 VALVHPIVMGSL-LVYTLWAGYLGWQWRRVRTIQTDINELKKQVKPTPVTPDGAPAETAPSPVEIKIQQLTEERKELLKG  212 (316)
Q Consensus       134 ~aliHPi~M~~L-fa~tlyA~yLGwQ~Rr~Rt~g~ei~elkk~~~~~~~~~~g~~~~~~~sp~~~~i~~l~e~RKeLikg  212 (316)
                      .+++||++|+.+ |+|++|++|+|||||++|+.++.-++++..++.+ +..+.   +.+..+.+..|..++++|||++++
T Consensus         2 l~liHP~lm~~~vf~~~~~~~~lG~q~R~rR~~~~~g~~~~~~~~~~-~l~~~---~~~~~~~~~~~~~~~~~~~~l~~~   77 (175)
T PF13301_consen    2 LALIHPVLMGLLVFPVGGYAIYLGWQWRQRRLQENHGRWLTGGVVVA-VLIAL---AYSIARAIFLILALTGTRKELVKL   77 (175)
T ss_pred             chHHhHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhhhhhcccccc-chhcc---cchhhHHHHHHHHHHHHHHHHHhh
Confidence            468999999955 9999999999999999999988556665555543 22332   233348999999999999999999


Q ss_pred             hhhHhHHhhHHHHHHHHHHHhhhcceeeeecCCCcCcchhHHHHHHHHHHHHHHHHhhhhhhcCC-hhHHHHHHHHHHHH
Q 021217          213 SYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQKGS-ETARNLHIALNALN  291 (316)
Q Consensus       213 ~~rdrH~~~GsiLL~L~vlgavgG~~~T~~r~GkLF~gpHL~aGL~mv~Lml~SaAl~p~MqkGr-~~aR~LHI~LNilL  291 (316)
                      ++|++|+++|++++++++++++||+.+|+.++|++|++||+|+|+++++||++|++++|+|++|| ++||++|+++|+++
T Consensus        78 ~~r~~H~~~g~~ll~~~~L~~lGG~~~~~~~~~~lf~spH~~~Gl~~~~L~~~s~al~~~i~~g~~~~~R~lHi~lN~~~  157 (175)
T PF13301_consen   78 KARDRHYRLGFALLAFMGLGALGGQLGTYRQNGKLFWSPHLWAGLAVVGLMAFSAALVPQIQKGNRPWARRLHIYLNSLA  157 (175)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCCCCccCchHHHHHHHHHHHHHHHHHHHHHccCCchhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999985 59999999999999


Q ss_pred             HHHHHHHhhchHHHHHHH
Q 021217          292 ILLFIWQIPTGIDIVFKV  309 (316)
Q Consensus       292 LlLFlwQaiTG~~IVqK~  309 (316)
                      ++||+||++||+++++||
T Consensus       158 l~Lf~~q~itG~~ill~i  175 (175)
T PF13301_consen  158 LLLFAWQAITGWRILLKI  175 (175)
T ss_pred             HHHHHHHHHHHHHHHhcC
Confidence            999999999999999986

>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []

Probab=98.45  E-value=3.5e-06  Score=68.88  Aligned_cols=91  Identities=22%  Similarity=0.069  Sum_probs=76.0

Q ss_pred             hhhHhHHhhHHHHHHHHHHHhhhcceeeeecCCCcCcchhHHHHHHHHHHHHHHHHhhhhhhc-------CChhHHHHHH
Q 021217          213 SYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQK-------GSETARNLHI  285 (316)
Q Consensus       213 ~~rdrH~~~GsiLL~L~vlgavgG~~~T~~r~GkLF~gpHL~aGL~mv~Lml~SaAl~p~Mqk-------Gr~~aR~LHI  285 (316)
                      .....|..+-.+.+.+.++|.+....+.-.+..+-|.+.|-+.|++.++++.++...+-....       .|+..+..|.
T Consensus        33 ~~~~~H~~lq~l~~~~~~~G~~~~~~~~~~~~~~h~~s~H~~lG~~~~~l~~~Q~~~G~~~~~~~~~~~~~r~~~~~~H~  112 (137)
T PF03188_consen   33 WWFRIHWILQVLALVFAIIGFVAIFINKNRNGKPHFKSWHSILGLATFVLALLQPLLGFFRFFMPGLPRKRRPIWNKWHR  112 (137)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCchhhhhHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHH
Confidence            345789999999888888888888877766666778999999999999999998875554422       3566777899


Q ss_pred             HHHHHHHHHHHHHhhchH
Q 021217          286 ALNALNILLFIWQIPTGI  303 (316)
Q Consensus       286 ~LNilLLlLFlwQaiTG~  303 (316)
                      .++.++.++...++.+|.
T Consensus       113 ~~G~~~~~l~~~~i~~G~  130 (137)
T PF03188_consen  113 WLGYLIYVLAIATIFLGL  130 (137)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999999997

It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane

>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain

Probab=98.31  E-value=1.2e-05  Score=66.17  Aligned_cols=90  Identities=18%  Similarity=0.011  Sum_probs=75.8

Q ss_pred             hhHhHHhhHHHHHHHHHHHhhhcceeeeecCCCcCcchhHHHHHHHHHHHHHHHHhhhhhhc-------CChhHHHHHHH
Q 021217          214 YRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQK-------GSETARNLHIA  286 (316)
Q Consensus       214 ~rdrH~~~GsiLL~L~vlgavgG~~~T~~r~GkLF~gpHL~aGL~mv~Lml~SaAl~p~Mqk-------Gr~~aR~LHI~  286 (316)
                      ...-|..+..+-+.+++.|.+.+..+.-.+..+-|.+.|-+.|++...|++++...+-....       .|..++..|..
T Consensus        33 ~~~~H~~lq~~a~~~~~~g~~~~~~~~~~~~~~~~~s~H~~lGl~~~~l~~~Q~~~G~~~~~~~~~~~~~r~~~~~~H~~  112 (129)
T smart00665       33 WFLLHVVLQILALVLGVIGLLAIFISHNESGIANFYSLHSWLGLAAFVLAGLQWLSGFLRPLPPGLPSKYRSYLNPYHRF  112 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCccchhHHHHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHH
Confidence            45789999999999999999988888665555678999999999999999998887655422       26677789999


Q ss_pred             HHHHHHHHHHHHhhchH
Q 021217          287 LNALNILLFIWQIPTGI  303 (316)
Q Consensus       287 LNilLLlLFlwQaiTG~  303 (316)
                      ++.+++.|-.+++++|.
T Consensus       113 ~G~~~~~la~~~~~lG~  129 (129)
T smart00665      113 VGLAAFILAIVTIFLGL  129 (129)
T ss_pred             HHHHHHHHHHHHHHccC
Confidence            99999999999999883

Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.

>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product

Probab=98.18  E-value=2.6e-05  Score=67.99  Aligned_cols=92  Identities=16%  Similarity=0.048  Sum_probs=77.6

Q ss_pred             hhHhHHhhHHHHHHHHHHHhhhcceeeeecCCCcCcchhHHHHHHHHHHHHHHHHhhhhh------h---cCChhHHHHH
Q 021217          214 YRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAM------Q---KGSETARNLH  284 (316)
Q Consensus       214 ~rdrH~~~GsiLL~L~vlgavgG~~~T~~r~GkLF~gpHL~aGL~mv~Lml~SaAl~p~M------q---kGr~~aR~LH  284 (316)
                      ....|..+..+.+.+.+.|.+....+-..+..+-|.+.|-+.|++.++|++++.+.+-..      .   +.|...+..|
T Consensus        57 ~~~~H~~l~~la~~~~~~G~~~~~~~~~~~~~~hf~s~H~~lGl~~~~l~~~Q~~~G~~~~~~~~~~~~~~~r~~~~~~H  136 (183)
T cd08761          57 KVRLHWILQLLALLCILAGLVAIYYNKERNGKPHFTSWHGILGLVTVILIVLQALGGLALLYPPGLRRGESKAKKLKKYH  136 (183)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHhhHHHhcccccHHHHHHHH
Confidence            457899999999999999988888776666667889999999999999999998886532      1   2467778899


Q ss_pred             HHHHHHHHHHHHHHhhchHHH
Q 021217          285 IALNALNILLFIWQIPTGIDI  305 (316)
Q Consensus       285 I~LNilLLlLFlwQaiTG~~I  305 (316)
                      ..++.+++++-..++.+|.+-
T Consensus       137 ~~~G~~~~~l~~~t~~lGl~~  157 (183)
T cd08761         137 RLSGYVAYLLGLATLVLGLET  157 (183)
T ss_pred             HHHHHHHHHHHHHHHHHhcCc
Confidence            999999999999999999854

Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>cd08554 Cyt_b561 Eukaryotic cytochrome b(561)

Probab=98.05  E-value=8.4e-05  Score=61.07  Aligned_cols=89  Identities=13%  Similarity=0.001  Sum_probs=75.5

Q ss_pred             hhHhHHhhHHHHHHHHHHHhhhcceeeeecCCCcCcchhHHHHHHHHHHHHHHHHhhhhh--hc-----CChhHHHHHHH
Q 021217          214 YRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAM--QK-----GSETARNLHIA  286 (316)
Q Consensus       214 ~rdrH~~~GsiLL~L~vlgavgG~~~T~~r~GkLF~gpHL~aGL~mv~Lml~SaAl~p~M--qk-----Gr~~aR~LHI~  286 (316)
                      -+.-|.-+..+.+.+++.|.+.+..+.-.+..+-|.+.|-+.|++.+.|+.++...+-..  .+     .|...+..|..
T Consensus        35 ~~~~H~~l~~l~~~~~~~G~~~~~~~~~~~~~~h~~s~Hs~lGl~~~~l~~~q~~~G~~~~~~~~~~~~~r~~~~~~H~~  114 (131)
T cd08554          35 LKLLHAILHLLAFVLGLVGLLAVFLFHNAGGIANLYSLHSWLGLATVLLFLLQFLSGFVLFLLPLLRLSYRSSLLPFHRF  114 (131)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence            446899999999999999999998887766667789999999999999999998886333  12     15678889999


Q ss_pred             HHHHHHHHHHHHhhch
Q 021217          287 LNALNILLFIWQIPTG  302 (316)
Q Consensus       287 LNilLLlLFlwQaiTG  302 (316)
                      ++.+++.+-.+.+++|
T Consensus       115 ~G~~~~~la~~t~~~G  130 (131)
T cd08554         115 FGLAIFVLAIATILLG  130 (131)
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999999887

Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.

>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product

Probab=97.68  E-value=0.00063  Score=59.37  Aligned_cols=131  Identities=16%  Similarity=0.056  Sum_probs=96.9

Q ss_pred             ccceehhhhhHHHHHHHHHHHHHHHHhhheeeeeccccchHHHhhhcCCCCCCCCCCCCCCCCChhHHHHHhhHHHHHHH
Q 021217          130 EGRSVALVHPIVMGSLLVYTLWAGYLGWQWRRVRTIQTDINELKKQVKPTPVTPDGAPAETAPSPVEIKIQQLTEERKEL  209 (316)
Q Consensus       130 egr~~aliHPi~M~~Lfa~tlyA~yLGwQ~Rr~Rt~g~ei~elkk~~~~~~~~~~g~~~~~~~sp~~~~i~~l~e~RKeL  209 (316)
                      +.+.....|+++|...|....=.+.+-.+.++.  .+                                           
T Consensus        31 ~~~~~~~~Hg~lm~iaw~~l~p~gil~ar~~~~--~~-------------------------------------------   65 (191)
T cd08760          31 SSDTLIKAHGVLMAIAWGILMPIGALLARYFLL--GD-------------------------------------------   65 (191)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CC-------------------------------------------
Confidence            345667899999997777766655554433211  00                                           


Q ss_pred             hhhhhhHhHHhhHHHHHHHHHHHhhhcceeeeecCCCcCcchhHHHHHHHHHHHHHHHHhhhhhhc----CChhHHHHHH
Q 021217          210 LKGSYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQK----GSETARNLHI  285 (316)
Q Consensus       210 ikg~~rdrH~~~GsiLL~L~vlgavgG~~~T~~r~GkLF~gpHL~aGL~mv~Lml~SaAl~p~Mqk----Gr~~aR~LHI  285 (316)
                       +.++ .-|..+-.+-+.+.+.|.+.|..+. ....+-+.+.|.+.|+++++|++++...+-....    .|..++..|.
T Consensus        66 -~~~~-~~H~~~q~~~~~~~i~g~~~~~~~~-~~~~~~~~~~H~~lGl~~~~l~~lQ~~~G~~~~~~~~~~R~~~~~~H~  142 (191)
T cd08760          66 -PVWF-YLHAGLQLLAVLLAIAGFVLGIVLV-QGGGGSLNNAHAILGIIVLALAILQPLLGLLRPHPGSKKRSIWNWAHR  142 (191)
T ss_pred             -chhH-HHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCCCcCcchhhhHHHHHHHHHHHHHHHhcCCCCCCcccchHHHHH
Confidence             0133 4799888888888888888888775 2334456899999999999999988776654322    3666788999


Q ss_pred             HHHHHHHHHHHHHhhchHHHHHH
Q 021217          286 ALNALNILLFIWQIPTGIDIVFK  308 (316)
Q Consensus       286 ~LNilLLlLFlwQaiTG~~IVqK  308 (316)
                      .+..++.+|-.+|+.+|....+.
T Consensus       143 ~~G~~~~~l~~v~i~~G~~~~~~  165 (191)
T cd08760         143 WLGRAALILAIVNIFLGLDLAGA  165 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999988764

Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product

Probab=97.64  E-value=0.00098  Score=57.87  Aligned_cols=89  Identities=15%  Similarity=-0.008  Sum_probs=70.3

Q ss_pred             hHhHHhhHHHHHHHHHHHhhhcceeeeecCCCcCcchhHHHHHHHHHHHHHHHHhhhhh--hcC-----ChhHHHHHHHH
Q 021217          215 RDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAM--QKG-----SETARNLHIAL  287 (316)
Q Consensus       215 rdrH~~~GsiLL~L~vlgavgG~~~T~~r~GkLF~gpHL~aGL~mv~Lml~SaAl~p~M--qkG-----r~~aR~LHI~L  287 (316)
                      +.-|.-++.+.+.+++.|...=..+--.+..+-|++.|-|.|++.+.|..+++..+-.+  .++     |...+..|...
T Consensus        41 k~~H~~L~~la~~~~~~Gl~av~~~h~~~~~~hf~SlHswlGl~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~H~~~  120 (143)
T cd08763          41 KILHGLLHIMALVISLVGLVAVFDYHQANGYPDMYSLHSWCGILTFVLYFLQWLIGFSFFLFPGASFTLRSQYKPLHEFF  120 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccccCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHhHHHHHH
Confidence            45899888888888777776544444445556789999999999999999988887433  332     56666799999


Q ss_pred             HHHHHHHHHHHhhchH
Q 021217          288 NALNILLFIWQIPTGI  303 (316)
Q Consensus       288 NilLLlLFlwQaiTG~  303 (316)
                      +.+++++....+.+|.
T Consensus       121 G~~~f~la~~t~~lG~  136 (143)
T cd08763         121 GRALFLSSVGTSLLGL  136 (143)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999999997

Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1

Probab=97.63  E-value=0.0012  Score=57.45  Aligned_cols=89  Identities=16%  Similarity=0.056  Sum_probs=66.5

Q ss_pred             hHhHHhhHHHHHHHHHHHhhhcceeeeecCCCcCcchhHHHHHHHHHHHHHHHHhhh--hhhcC-----ChhHHHHHHHH
Q 021217          215 RDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVP--AMQKG-----SETARNLHIAL  287 (316)
Q Consensus       215 rdrH~~~GsiLL~L~vlgavgG~~~T~~r~GkLF~gpHL~aGL~mv~Lml~SaAl~p--~MqkG-----r~~aR~LHI~L  287 (316)
                      +.-|.-+-.+.+.+.+.|.+.=..+--.+..+-|++.|-|.|++.+.|.+++...+-  ...++     |...+..|...
T Consensus        41 k~iH~~l~~la~~~~vvGl~avf~~~~~~~~~~~~SlHSwlGl~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~H~~~  120 (144)
T cd08766          41 KAVHLTLHLVALVLGIVGIYAAFKFHNEVGIPNLYSLHSWLGIGTISLFGLQWLFGFVTFWFPGASRNTRAALLPWHVFL  120 (144)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence            357877666666666665543333333344456899999999999999999888774  33444     55666799999


Q ss_pred             HHHHHHHHHHHhhchH
Q 021217          288 NALNILLFIWQIPTGI  303 (316)
Q Consensus       288 NilLLlLFlwQaiTG~  303 (316)
                      +.+++++....+.+|.
T Consensus       121 G~~~~~la~~t~~lGl  136 (144)
T cd08766         121 GLAIYYLAIATAETGL  136 (144)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999999997

Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561)

Probab=97.45  E-value=0.0022  Score=59.23  Aligned_cols=90  Identities=18%  Similarity=0.090  Sum_probs=67.7

Q ss_pred             hhHhHHhhHHHHHHHHHHHhhhcceeeeec--CCCcCcchhHHHHHHHHHHHHHHHHhhh--hhhcC-ChhHH----HHH
Q 021217          214 YRDRHYNAGSILLGFGVLESVGGGVNTYLR--AGKLFPGPHLFAGAAITVLWALAAALVP--AMQKG-SETAR----NLH  284 (316)
Q Consensus       214 ~rdrH~~~GsiLL~L~vlgavgG~~~T~~r--~GkLF~gpHL~aGL~mv~Lml~SaAl~p--~MqkG-r~~aR----~LH  284 (316)
                      .+.-|.-+..+.+.+++.|...-.-+.-.+  .-+-|++.|-|.|++.+.|..++...+-  ...++ +...|    ..|
T Consensus        57 ~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~~hfySlHSwlGl~t~~L~~lQ~~~Gf~~fl~P~~~~~~r~~~~p~H  136 (214)
T cd08764          57 LKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPIPNMYSLHSWLGLTAVILFSLQWVGGFVSFLFPGLPETLRAAYLPLH  136 (214)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhHHH
Confidence            456899998888888887754322222222  3446799999999999999999888774  23443 43444    699


Q ss_pred             HHHHHHHHHHHHHHhhchH
Q 021217          285 IALNALNILLFIWQIPTGI  303 (316)
Q Consensus       285 I~LNilLLlLFlwQaiTG~  303 (316)
                      ...+.+++++...-+.+|.
T Consensus       137 ~~~Gl~~fvLaiaT~~lGl  155 (214)
T cd08764         137 VFFGLFIFVLAVATALLGI  155 (214)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999997

Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product

Probab=97.41  E-value=0.0028  Score=55.96  Aligned_cols=89  Identities=16%  Similarity=0.066  Sum_probs=64.8

Q ss_pred             hHhHHhhHHHHHHHHHHHhhhcceeeeecCCCcCcchhHHHHHHHHHHHHHHHHhhhhhh--cC-----ChhHHHHHHHH
Q 021217          215 RDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQ--KG-----SETARNLHIAL  287 (316)
Q Consensus       215 rdrH~~~GsiLL~L~vlgavgG~~~T~~r~GkLF~gpHL~aGL~mv~Lml~SaAl~p~Mq--kG-----r~~aR~LHI~L  287 (316)
                      +.-|.-+=.+.+.+++.|.+.=..+--.+..+-|+|.|-|.|++.+.|..+++..+-...  ++     |...+..|+..
T Consensus        48 k~iH~~L~~~a~~~~i~Gl~avf~~hn~~~~~~fySlHSwlGl~t~~l~~lQ~~~Gf~~f~~P~~~~~~r~~~~p~H~~~  127 (153)
T cd08765          48 KLIHAGLHILAFILAIISVVAVFVFHNAKNIPNMYSLHSWVGLAAVILYPLQLVLGISVYLLPVAPVRLRAALMPLHVYS  127 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccccCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHH
Confidence            466776655555555555543333333345567899999999999999999888774433  32     45556699999


Q ss_pred             HHHHHHHHHHHhhchH
Q 021217          288 NALNILLFIWQIPTGI  303 (316)
Q Consensus       288 NilLLlLFlwQaiTG~  303 (316)
                      +.++++|-..-+.+|+
T Consensus       128 G~~i~~Lai~t~~lG~  143 (153)
T cd08765         128 GLFIFGTVIATALMGI  143 (153)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999999996

Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me

>KOG1619 consensus Cytochrome b [Energy production and conversion]

Probab=97.18  E-value=0.0033  Score=59.52  Aligned_cols=99  Identities=18%  Similarity=0.125  Sum_probs=74.9

Q ss_pred             hHhHHhhHHHHHHHHHHHhhhcceeeeecCCCcCcchhHHHHHHHHHHHHHHHHhhh--hhhcC-----ChhHHHHHHHH
Q 021217          215 RDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVP--AMQKG-----SETARNLHIAL  287 (316)
Q Consensus       215 rdrH~~~GsiLL~L~vlgavgG~~~T~~r~GkLF~gpHL~aGL~mv~Lml~SaAl~p--~MqkG-----r~~aR~LHI~L  287 (316)
                      |--|--+=++.+.+++.|...=+-+.-..+-..|++-|-|.|+..+.|-.++...+-  +..+|     |.....+|+.+
T Consensus        89 KliH~~LH~~Alvl~i~gl~avf~~hn~~~i~NfySLHSWlGl~~v~ly~~Q~v~GF~tfl~pg~~~~~Rs~lmP~H~~~  168 (245)
T KOG1619|consen   89 KLIHLGLHIIALVLAIIGLCAVFDSHNLVGIANFYSLHSWLGLCVVILYSLQWVFGFFTFLFPGSPESYRSRLMPWHVFL  168 (245)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccceeeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHhhhhhHHHHH
Confidence            356877777777777777765555555555567899999999999999988776552  33343     56667799999


Q ss_pred             HHHHHHHHHHHhhchHHHHHHHhhcc
Q 021217          288 NALNILLFIWQIPTGIDIVFKVLEFT  313 (316)
Q Consensus       288 NilLLlLFlwQaiTG~~IVqK~l~ft  313 (316)
                      ++.++.+...|+.||.---.++.+++
T Consensus       169 Gl~~f~lai~ta~~Gl~ek~~f~~~~  194 (245)
T KOG1619|consen  169 GLAIFILAIVTALTGLLEKLTFLCFG  194 (245)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            99999999999999995555566555

>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product

Probab=96.98  E-value=0.013  Score=53.13  Aligned_cols=88  Identities=13%  Similarity=0.046  Sum_probs=63.6

Q ss_pred             HhHHhhHHHHHHHHHHHhhhcceeeeecCCCcCcchhHHHHHHHHHHHHHHHHhhhh--hhcC-----ChhHHHHHHHHH
Q 021217          216 DRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPA--MQKG-----SETARNLHIALN  288 (316)
Q Consensus       216 drH~~~GsiLL~L~vlgavgG~~~T~~r~GkLF~gpHL~aGL~mv~Lml~SaAl~p~--MqkG-----r~~aR~LHI~LN  288 (316)
                      .-|.-+=.+.+.+.+.|...=.-+--.+.-+-+++.|-|.|++.+.|..++...+-.  ..++     |...+..|+..+
T Consensus        72 ~~H~~L~~~Al~~~vvGl~avf~~hn~~~~~nlySlHSWlGl~t~~Lf~lQ~~~Gf~~f~~p~~~~~~ra~~~p~H~~~G  151 (179)
T cd08762          72 LLHAGLLLLAFILTVIGLCAVFNFHNVHHTANLYSLHSWVGICTVALFTCQWVMGFTSFLLPWAPMWLRALVKPIHVFFG  151 (179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhHHHHHHH
Confidence            678777666666666655543333333334466899999999999999988766543  3332     444456999999


Q ss_pred             HHHHHHHHHHhhchH
Q 021217          289 ALNILLFIWQIPTGI  303 (316)
Q Consensus       289 ilLLlLFlwQaiTG~  303 (316)
                      ..+++|....+.+|+
T Consensus       152 ~~if~Laiat~~lGl  166 (179)
T cd08762         152 AMILVLSIASCISGI  166 (179)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999999996

Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>PLN02680 carbon-monoxide oxygenase

Probab=96.74  E-value=0.022  Score=53.49  Aligned_cols=91  Identities=16%  Similarity=0.070  Sum_probs=65.1

Q ss_pred             HhHHhhHHHHHHHHHHHhhhcceeeeecCCCcCcchhHHHHHHHHHHHHHHHHhhhhh--hcC-----ChhHHHHHHHHH
Q 021217          216 DRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAM--QKG-----SETARNLHIALN  288 (316)
Q Consensus       216 drH~~~GsiLL~L~vlgavgG~~~T~~r~GkLF~gpHL~aGL~mv~Lml~SaAl~p~M--qkG-----r~~aR~LHI~LN  288 (316)
                      .-|.-+=.+.+.+.+.|...=.-+--.+..+-|+|.|-|.|++.+.|..++...+-..  .++     |......|+..+
T Consensus        81 ~iH~~L~~lA~~l~vvGl~avfk~hn~~~~~nfySlHSWlGl~t~iL~~lQ~~~Gf~~f~~P~~~~~~R~~~~p~H~~~G  160 (232)
T PLN02680         81 LVHLTLQFLAFCLSLIGVWAALKFHNEKGIDNFYSLHSWLGLACLFLFSLQWAAGFVTFWYPGGSRNSRASLLPWHVFFG  160 (232)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHH
Confidence            5687777776666666665422222222445779999999999999999888776433  332     333445999999


Q ss_pred             HHHHHHHHHHhhchHHHHHH
Q 021217          289 ALNILLFIWQIPTGIDIVFK  308 (316)
Q Consensus       289 ilLLlLFlwQaiTG~~IVqK  308 (316)
                      .++++|....+.+|+  .+|
T Consensus       161 ~~if~LaiaT~~lG~--~Ek  178 (232)
T PLN02680        161 IYIYALAVATATTGI--LEK  178 (232)
T ss_pred             HHHHHHHHHHHHHHH--HHH
Confidence            999999999999997  455

>PLN02810 carbon-monoxide oxygenase

Probab=96.66  E-value=0.04  Score=51.95  Aligned_cols=89  Identities=15%  Similarity=0.102  Sum_probs=63.2

Q ss_pred             hHhHHhhHHHHHHHHHHHhhhcceeeeecCCCcCcchhHHHHHHHHHHHHHHHHhhh--hhhcC-----ChhHHHHHHHH
Q 021217          215 RDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVP--AMQKG-----SETARNLHIAL  287 (316)
Q Consensus       215 rdrH~~~GsiLL~L~vlgavgG~~~T~~r~GkLF~gpHL~aGL~mv~Lml~SaAl~p--~MqkG-----r~~aR~LHI~L  287 (316)
                      +.-|.-+=.+.+.+.+.|...=.-+--.+.-+-+++.|-|.|++.+.|..++...+-  ...++     |......|+..
T Consensus        80 K~iH~~lh~~Al~l~vvGl~Avf~~Hn~~~i~nlySLHSWlGl~tv~Lf~lQw~~Gf~~Fl~P~~~~~~R~~~lP~Hv~~  159 (231)
T PLN02810         80 KLIHLVLHAIALILGIFGICAAFKNHNESGIANLYSLHSWLGIGIISLYGIQWIYGFIVFFFPGGSTNLRSGSLPWHVLF  159 (231)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhHHHHHH
Confidence            356776666666666655543332222233346789999999999999998877765  34554     33334599999


Q ss_pred             HHHHHHHHHHHhhchH
Q 021217          288 NALNILLFIWQIPTGI  303 (316)
Q Consensus       288 NilLLlLFlwQaiTG~  303 (316)
                      +..+.+|....+.+|+
T Consensus       160 Gl~if~LAiata~lGi  175 (231)
T PLN02810        160 GLFVYILAVGNAALGF  175 (231)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999999997

>PLN02351 cytochromes b561 family protein

Probab=96.03  E-value=0.11  Score=49.41  Aligned_cols=85  Identities=18%  Similarity=0.148  Sum_probs=61.6

Q ss_pred             hHhHHhhHHHHHHHHHHHhhhcceeeeecCC---CcCcchhHHHHHHHHHHHHHHHHhhh--hhhcC-----ChhHHHHH
Q 021217          215 RDRHYNAGSILLGFGVLESVGGGVNTYLRAG---KLFPGPHLFAGAAITVLWALAAALVP--AMQKG-----SETARNLH  284 (316)
Q Consensus       215 rdrH~~~GsiLL~L~vlgavgG~~~T~~r~G---kLF~gpHL~aGL~mv~Lml~SaAl~p--~MqkG-----r~~aR~LH  284 (316)
                      +.-|.-+=.+.+.+.+.|...    -.-+.+   +-+++-|-|.|++.+.|..++...+-  ...++     |...+..|
T Consensus        84 K~lH~~Lh~~Ali~~vvGl~a----~fh~~~~~i~nlySLHSWlGl~tv~Lf~lQwv~Gf~~F~~P~~~~~~Ra~~~P~H  159 (242)
T PLN02351         84 KSVHLWLQGLALASGVFGIWT----KFHGQDGIVANFYSLHSWMGLICVSLFGAQWLTGFMSFWHRGEMRTTRTTVLPWH  159 (242)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHhHHH
Confidence            466776666666666655554    222322   34799999999999999988776553  33443     44455699


Q ss_pred             HHHHHHHHHHHHHHhhchH
Q 021217          285 IALNALNILLFIWQIPTGI  303 (316)
Q Consensus       285 I~LNilLLlLFlwQaiTG~  303 (316)
                      +..+..+++|...-+.+|+
T Consensus       160 v~~Gl~if~LaiaTa~lGl  178 (242)
T PLN02351        160 VFLGLYTYGLAVATAETGL  178 (242)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999996

>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently

Probab=91.83  E-value=1.5  Score=36.80  Aligned_cols=90  Identities=16%  Similarity=0.018  Sum_probs=60.8

Q ss_pred             hhhHhHHhhHHHHHHHHHHHhhhcceeeeecCCCcC--cchhHHHHHHHHHHHHHHHHhh--------------------
Q 021217          213 SYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLF--PGPHLFAGAAITVLWALAAALV--------------------  270 (316)
Q Consensus       213 ~~rdrH~~~GsiLL~L~vlgavgG~~~T~~r~GkLF--~gpHL~aGL~mv~Lml~SaAl~--------------------  270 (316)
                      ..|-.|+-.-..++++.+.|.......-....+..+  ...|.++|+++.+++++-....                    
T Consensus         5 ~~r~~HW~~a~~~i~l~~tG~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   84 (182)
T PF01292_consen    5 FTRILHWLNALSFIALIATGLWIHFPPPGLYFGDFGGVRNWHVIAGLLLFALLIFRLLWRWRRLFPWSDDVFFQVKNYLY   84 (182)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHhHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHH
Confidence            467788887777777777777654444444445444  6789999999999987765555                    


Q ss_pred             -------hhhhcCChhHHHHHHHHHHHHHHHHHHHhhchHHHH
Q 021217          271 -------PAMQKGSETARNLHIALNALNILLFIWQIPTGIDIV  306 (316)
Q Consensus       271 -------p~MqkGr~~aR~LHI~LNilLLlLFlwQaiTG~~IV  306 (316)
                             |.-.+.++..|.    ...++.++.+.+++||+-..
T Consensus        85 ~~~~~~~p~~~~~~~~~~~----~~~~~~~~~~~~~iTG~~~~  123 (182)
T PF01292_consen   85 FLLRGKPPPAGKYNPGQKI----VHWVLYLLLLLLPITGLLLW  123 (182)
T ss_pred             HHhcCCCCCCCcCChHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence                   112222444444    55667788888999998554

This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane

>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes

Probab=91.49  E-value=1.4  Score=36.70  Aligned_cols=90  Identities=21%  Similarity=0.156  Sum_probs=52.8

Q ss_pred             hhhHhHHhhHHHHHHHHHHHhhhccee------------------eeecC----CCcCcchhHHHHHHHHHHHHHHHHhh
Q 021217          213 SYRDRHYNAGSILLGFGVLESVGGGVN------------------TYLRA----GKLFPGPHLFAGAAITVLWALAAALV  270 (316)
Q Consensus       213 ~~rdrH~~~GsiLL~L~vlgavgG~~~------------------T~~r~----GkLF~gpHL~aGL~mv~Lml~SaAl~  270 (316)
                      ..+.-|...|.++++++++-.+-+...                  ...+.    ..-+....-++-+++..++++...++
T Consensus        45 ~~~~~H~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iTG  124 (188)
T PF00033_consen   45 LLRWLHFSLGIVFLALFLLRILWRLFSRRFWKSDDIWFRQIPQYRLFPRKPPPPSGKYNPLQKLVYWALYLLLLLMAITG  124 (188)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHGGGT---GGGHHHHHSHHHHHTT-HHHH----SS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            577899999999998888877777666                  11110    00111222222222222233333333


Q ss_pred             hhh---------------hcCChhHHHHHHHHHHHHHHHHHHHhhch
Q 021217          271 PAM---------------QKGSETARNLHIALNALNILLFIWQIPTG  302 (316)
Q Consensus       271 p~M---------------qkGr~~aR~LHI~LNilLLlLFlwQaiTG  302 (316)
                      -.|               .....++|.+|.....+++++++.+++-.
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iH~~~~~ll~~~i~~Hi~~a  171 (188)
T PF00033_consen  125 LIMLWFFWWPLPPWLLPPPGLAEWARLIHFILAYLLLAFIIIHIYAA  171 (188)
T ss_dssp             HHC-----TTTTGGGS-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhcccchhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333               12378999999999999999998887643

The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.

>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product

Probab=90.25  E-value=3.5  Score=36.13  Aligned_cols=102  Identities=17%  Similarity=0.133  Sum_probs=81.2

Q ss_pred             cccceehhhhhHHHHHHHHHHHHHHHHhhheeeeeccccchHHHhhhcCCCCCCCCCCCCCCCCChhHHHHHhhHHHHHH
Q 021217          129 LEGRSVALVHPIVMGSLLVYTLWAGYLGWQWRRVRTIQTDINELKKQVKPTPVTPDGAPAETAPSPVEIKIQQLTEERKE  208 (316)
Q Consensus       129 ~egr~~aliHPi~M~~Lfa~tlyA~yLGwQ~Rr~Rt~g~ei~elkk~~~~~~~~~~g~~~~~~~sp~~~~i~~l~e~RKe  208 (316)
                      ...+.--.+|=..|..-++.++-+..+|+...  +...                                          
T Consensus        63 ~~~~~~~~~H~~~q~~~~~~~i~g~~~~~~~~--~~~~------------------------------------------   98 (191)
T cd08760          63 LGDPVWFYLHAGLQLLAVLLAIAGFVLGIVLV--QGGG------------------------------------------   98 (191)
T ss_pred             cCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh--ccCC------------------------------------------
Confidence            44566778999999987888888888887754  1111                                          


Q ss_pred             HhhhhhhHhHHhhHHHHHHHHHHHhhhcceeeeecC--CCcCcchhHHHHHHHHHHHHHHHHhhhhhhcCC
Q 021217          209 LLKGSYRDRHYNAGSILLGFGVLESVGGGVNTYLRA--GKLFPGPHLFAGAAITVLWALAAALVPAMQKGS  277 (316)
Q Consensus       209 Likg~~rdrH~~~GsiLL~L~vlgavgG~~~T~~r~--GkLF~gpHL~aGL~mv~Lml~SaAl~p~MqkGr  277 (316)
                         ..++.-|..+|.+++.++++-.+.|...-....  ...+...|.+.|.+...|-.+...++-.+...+
T Consensus        99 ---~~~~~~H~~lGl~~~~l~~lQ~~~G~~~~~~~~~~R~~~~~~H~~~G~~~~~l~~v~i~~G~~~~~~~  166 (191)
T cd08760          99 ---GSLNNAHAILGIIVLALAILQPLLGLLRPHPGSKKRSIWNWAHRWLGRAALILAIVNIFLGLDLAGAG  166 (191)
T ss_pred             ---CCCcCcchhhhHHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence               157789999999999999999999987655442  456679999999999999999999999997743

Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []

Probab=89.85  E-value=1.3  Score=36.23  Aligned_cols=96  Identities=16%  Similarity=0.081  Sum_probs=69.0

Q ss_pred             ccceehhhhhHHHHHHHHHHHHHHHHhhheeeeeccccchHHHhhhcCCCCCCCCCCCCCCCCChhHHHHHhhHHHHHHH
Q 021217          130 EGRSVALVHPIVMGSLLVYTLWAGYLGWQWRRVRTIQTDINELKKQVKPTPVTPDGAPAETAPSPVEIKIQQLTEERKEL  209 (316)
Q Consensus       130 egr~~aliHPi~M~~Lfa~tlyA~yLGwQ~Rr~Rt~g~ei~elkk~~~~~~~~~~g~~~~~~~sp~~~~i~~l~e~RKeL  209 (316)
                      +.+.--.+|-+.|...++..+-+....+..+...  +                                           
T Consensus        30 ~~~~~~~~H~~lq~l~~~~~~~G~~~~~~~~~~~--~-------------------------------------------   64 (137)
T PF03188_consen   30 SRKWWFRIHWILQVLALVFAIIGFVAIFINKNRN--G-------------------------------------------   64 (137)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--C-------------------------------------------
Confidence            4445567788888766666666666666544331  1                                           


Q ss_pred             hhhhhhHhHHhhHHHHHHHHHHHhhhcceeeeecCCC-----cCcchhHHHHHHHHHHHHHHHHhhh
Q 021217          210 LKGSYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGK-----LFPGPHLFAGAAITVLWALAAALVP  271 (316)
Q Consensus       210 ikg~~rdrH~~~GsiLL~L~vlgavgG~~~T~~r~Gk-----LF~gpHL~aGL~mv~Lml~SaAl~p  271 (316)
                       +..+..-|-.+|.+.+.+.++-.+.|...-+....+     .+.-.|-+.|..+..|..++..++-
T Consensus        65 -~~h~~s~H~~lG~~~~~l~~~Q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~G~  130 (137)
T PF03188_consen   65 -KPHFKSWHSILGLATFVLALLQPLLGFFRFFMPGLPRKRRPIWNKWHRWLGYLIYVLAIATIFLGL  130 (137)
T ss_pred             -CCCCCCchhhhhHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             125778999999999999999999999887742222     3434499999999999888877765

It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane

>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain

Probab=88.37  E-value=1.5  Score=36.09  Aligned_cols=83  Identities=13%  Similarity=-0.059  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHhhhcceeeee--c--CCCcCcchhHHHHHHHHHHHHHHHHhhhhhhc--CChhHHHHHHHHHHHHHHHH
Q 021217          222 GSILLGFGVLESVGGGVNTYL--R--AGKLFPGPHLFAGAAITVLWALAAALVPAMQK--GSETARNLHIALNALNILLF  295 (316)
Q Consensus       222 GsiLL~L~vlgavgG~~~T~~--r--~GkLF~gpHL~aGL~mv~Lml~SaAl~p~Mqk--Gr~~aR~LHI~LNilLLlLF  295 (316)
                      |.+|..-+++..-+|+.....  +  ..+.+..-|........++.+++..+.-....  +.+-....|..++++.++|+
T Consensus         3 ~~lm~~~f~~l~p~gil~~r~~~~~~~~~~~~~~H~~lq~~a~~~~~~g~~~~~~~~~~~~~~~~~s~H~~lGl~~~~l~   82 (129)
T smart00665        3 PVLMILGFGFLMGEAILVARPLTRFLSKPTWFLLHVVLQILALVLGVIGLLAIFISHNESGIANFYSLHSWLGLAAFVLA   82 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCccchhHHHHHHHHHHH
Confidence            344444444445555555542  2  22344678988888888888877777665533  23457789999999999999


Q ss_pred             HHHhhchHH
Q 021217          296 IWQIPTGID  304 (316)
Q Consensus       296 lwQaiTG~~  304 (316)
                      +.|.+.|.-
T Consensus        83 ~~Q~~~G~~   91 (129)
T smart00665       83 GLQWLSGFL   91 (129)
T ss_pred             HHHHHHHHH
Confidence            999999975

Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.

>cd08554 Cyt_b561 Eukaryotic cytochrome b(561)

Probab=86.10  E-value=3.6  Score=33.82  Aligned_cols=82  Identities=18%  Similarity=0.064  Sum_probs=54.4

Q ss_pred             HHHHHHHHHhhhcceeeee--cCCC-cCcchhHHHHHHHHHHHHHHHHhhhhhh--cCChhHHHHHHHHHHHHHHHHHHH
Q 021217          224 ILLGFGVLESVGGGVNTYL--RAGK-LFPGPHLFAGAAITVLWALAAALVPAMQ--KGSETARNLHIALNALNILLFIWQ  298 (316)
Q Consensus       224 iLL~L~vlgavgG~~~T~~--r~Gk-LF~gpHL~aGL~mv~Lml~SaAl~p~Mq--kGr~~aR~LHI~LNilLLlLFlwQ  298 (316)
                      +|..-+++...+|++....  ..++ ....-|.........+.+++..++-...  ++..-....|..++++.++|+..|
T Consensus         8 lm~~g~~~l~~~~il~~r~~~~~~~~~~~~~H~~l~~l~~~~~~~G~~~~~~~~~~~~~~h~~s~Hs~lGl~~~~l~~~q   87 (131)
T cd08554           8 LMVIGFVFLMGEALLVYRVFRLLTKRALKLLHAILHLLAFVLGLVGLLAVFLFHNAGGIANLYSLHSWLGLATVLLFLLQ   87 (131)
T ss_pred             HHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHHH
Confidence            3443344444455554333  1122 3356788888877777777666666553  234456789999999999999999


Q ss_pred             hhchHHH
Q 021217          299 IPTGIDI  305 (316)
Q Consensus       299 aiTG~~I  305 (316)
                      ..+|.-.
T Consensus        88 ~~~G~~~   94 (131)
T cd08554          88 FLSGFVL   94 (131)
T ss_pred             HHHHHHH
Confidence            9999755

Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.

>PF13172 PepSY_TM_1: PepSY-associated TM helix

Probab=85.71  E-value=1.4  Score=29.48  Aligned_cols=30  Identities=17%  Similarity=0.196  Sum_probs=26.8

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHhhchHHHH
Q 021217          277 SETARNLHIALNALNILLFIWQIPTGIDIV  306 (316)
Q Consensus       277 r~~aR~LHI~LNilLLlLFlwQaiTG~~IV  306 (316)
                      +.++|.+|..+..+..+..+..++||.-++
T Consensus         2 r~~~~~~H~~~g~~~~~~ll~~~lTG~~l~   31 (34)
T PF13172_consen    2 RKFWRKIHRWLGLIAAIFLLLLALTGALLN   31 (34)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            578999999999999999999999998543

>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product

Probab=85.62  E-value=4.6  Score=35.35  Aligned_cols=61  Identities=20%  Similarity=0.157  Sum_probs=49.7

Q ss_pred             hhhHhHHhhHHHHHHHHHHHhhhcceeeee-------cCCCcCcchhHHHHHHHHHHHHHHHHhhhhh
Q 021217          213 SYRDRHYNAGSILLGFGVLESVGGGVNTYL-------RAGKLFPGPHLFAGAAITVLWALAAALVPAM  273 (316)
Q Consensus       213 ~~rdrH~~~GsiLL~L~vlgavgG~~~T~~-------r~GkLF~gpHL~aGL~mv~Lml~SaAl~p~M  273 (316)
                      .+..-|-.+|.+.+.++++-.+.|...-+.       ...+.+.-.|-+.|..+..|..++..++-+-
T Consensus        90 hf~s~H~~lGl~~~~l~~~Q~~~G~~~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~~  157 (183)
T cd08761          90 HFTSWHGILGLVTVILIVLQALGGLALLYPPGLRRGESKAKKLKKYHRLSGYVAYLLGLATLVLGLET  157 (183)
T ss_pred             CccchhHHHHHHHHHHHHHHHHHhHHHHhhHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            577899999999999999999999864432       2344567889999999999999888887654

Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes

Probab=82.65  E-value=5.9  Score=33.04  Aligned_cols=93  Identities=14%  Similarity=0.003  Sum_probs=55.5

Q ss_pred             hhhHhHHhhHHHHHHHHHHHhhhc----ceeeeecCCCcCcchhHHHHHHHHHHHHHHHHhhhhh---------------
Q 021217          213 SYRDRHYNAGSILLGFGVLESVGG----GVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAM---------------  273 (316)
Q Consensus       213 ~~rdrH~~~GsiLL~L~vlgavgG----~~~T~~r~GkLF~gpHL~aGL~mv~Lml~SaAl~p~M---------------  273 (316)
                      ..|--|.-....++.+.+.|...+    ..............-|.++|+++.+++++=....-.=               
T Consensus         7 ~~R~~Hw~~al~~~~l~~tG~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (188)
T PF00033_consen    7 FTRLLHWLNALLFILLLITGLYLMFPFWWLAGGFPGRQLLRWLHFSLGIVFLALFLLRILWRLFSRRFWKSDDIWFRQIP   86 (188)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-TTGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT---GGGHHHHHSHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHH
Confidence            467889988777777777666654    2222222233446899999999988776633322211               


Q ss_pred             ---------hcCChhHHHHHHHHHHHHHHHHHHHhhchHHH
Q 021217          274 ---------QKGSETARNLHIALNALNILLFIWQIPTGIDI  305 (316)
Q Consensus       274 ---------qkGr~~aR~LHI~LNilLLlLFlwQaiTG~~I  305 (316)
                               .+...+.....-..-.++.++.+.+++||+-.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iTG~~~  127 (188)
T PF00033_consen   87 QYRLFPRKPPPPSGKYNPLQKLVYWALYLLLLLMAITGLIM  127 (188)
T ss_dssp             HHHTT-HHHH----SS-HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     01223333344455556677788999999866

The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00