Citrus Sinensis ID: 021226

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-----
Protein Sequence
MARSAATPEILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQDEASAVLSFLTGRGKALYLSISKNEFTEGVKVSLSPAAVSSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKKNKISVEELQLCLEELEESIDLQKQAEKVIVPSYTGIDDEDIEEEFKKLEQEVECERPKPTVSKTGVNEPAASESAESLRVAFSTIGLNDGQATALAISDTVVPDRSNESKHPMLESA
Secondary Structure (PSIPRED)
cccccccccccccccEEEHHHHHHHHHHHHHHHHHccccccHHEEHHHHHHHccccccHHHHHHHHHccccEEEEEEcccccEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHEEHHHHHHHHHHHHHHHHHccccccccEEEHHHHHHHHccccHHHHHHHHHHHcccEEEEEEEccccEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHccccccccccccEEccccccccccccccccccc
Coil and Loop (DISEMBL)
marsaatpeiLLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKfqdkcggqdeASAVLSFLTGRGKALYLSISkneftegvkvslspaavssisslDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKKNKISVEELQLCLEELEESIDLQKQAEKvivpsytgiddeDIEEEFKKLEQEvecerpkptvsktgvnepaaseSAESLRVAFSTiglndgqatalaisdtvvpdrsneskhpmlesa
Flexible Loop (DISEMBL)
marsaatpeillkdhVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQDEASAVLSFLTGRGKALYLSISKNEFTEGVKVSLSPAAVSSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAkqlkltkesrekCTSLLNRVEEVLSLIenaestkkvsEAIQIGAQAIKKNKISVEELQLCLEELEESIDLQKQAEKVIVPSYTGIDDEDIEEEFKKLEqevecerpkptvsktgvnepaaseSAESLRVAFSTIGLNDGQATALAIsdtvvpdrsneskhpmlesa
Low Complexity Region (SEG)
MARSAATPEILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQDEASAVLSFLTGRGKALYLSISKNEFTEGVKvslspaavssisslDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKKNKISVeelqlcleeleeSIDLQKQAEKVIVPSYTGIddedieeefkkleqeveceRPKPTVSKTGVNEPAASESAESLRVAFSTIGLNDGQATALAISDTVVPDRSNESKHPMLESA
Disordered region (IsUnstruct)
*********ILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQDEASAVLSFLTGRGKALYLSISKNEFTEGVKVSLSPAAVSSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEM*********************************CTSLLNRVEEVLSLIEN******VSEAIQIGAQAIKKNKISVEELQLCLEELEESIDLQKQAEKVIVPSYTGI*******************************************VAFSTIGLNDGQATALAI********************
Disordered Region (DISOPRED)
************KDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQDEASAVLSFLTGRGKALYLSISKNEFTEGV*****************DVLHLIWTVEKLQLQLDIIDRHY********************RHAKQ*KL******K**SLLNRVEEVLSLIENAESTKKVSEAIQI***********VEELQLCLEELEESIDLQKQA*************EDIEEEFKKL*********************************************************************
Disordered Region (DISEMBL)
MARSAATPEILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQDEASAVLSFLTGRGKALYLSISKNEFTEGVKVSLSPAAVSSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKKNKISVEELQLCLEELEESIDLQKQAEKVIVPSYTGIDDEDIEEEFKKL*****************************LRVAFSTIGLNDGQATALAISDTVV***************
Disordered Region (DISPRO)
*****ATPEILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQDEASAVLSFLTGRGKALYLSISKNEFTEGVKVSLSPAAVSSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKKNKISVEELQLCLEELEESIDLQKQAEKVIVPSYTGIDDEDIEEEFKKLEQEVEC***************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MARSAATPEILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQDEASAVLSFLTGRGKALYLSISKNEFTEGVKVSLSPAAVSSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAxxxxxxxxxxxxxxxxxxxxxxxxxxxxEKVIVPSYTGIDDEDIEEEFKKLEQEVECERPKPTVSKTGVNEPAASESAESLRVAFSTIGLNDGQATALAISDTVVPDRSNESKHPMLESA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	315	2.2.26 [Sep-21-2011]
Q8R1T1	451	Charged multivesicular bo	yes	no	0.768	0.536	0.240	1e-08
Q8WUX9	453	Charged multivesicular bo	yes	no	0.739	0.514	0.239	2e-08
Q5R812	453	Charged multivesicular bo	yes	no	0.739	0.514	0.239	2e-08
Q5ZJB7	448	Charged multivesicular bo	yes	no	0.726	0.511	0.231	3e-07
Q5FW14	468	Charged multivesicular bo	yes	no	0.723	0.487	0.267	5e-05
P0C0A3	200	Charged multivesicular bo	no	no	0.568	0.895	0.279	0.0001
Q96FZ7	201	Charged multivesicular bo	no	no	0.565	0.885	0.271	0.0003
Q7T0X5	422	Charged multivesicular bo	N/A	no	0.730	0.545	0.238	0.0003
Q5R861	201	Charged multivesicular bo	no	no	0.466	0.731	0.276	0.0004
Q6PBQ2	457	Charged multivesicular bo	yes	no	0.688	0.474	0.201	0.0005

>sp|Q8R1T1|CHMP7_MOUSE Charged multivesicular body protein 7 OS=Mus musculus GN=Chmp7 PE=1 SV=1

 Score = 60.8 bits (146), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 127/258 (49%), Gaps = 16/258 (6%)

Query: 11  LLKDH-------VILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQ--DEASA 61
           +L DH       ++ +E+LK+KA+EV +L   S  +S  ++ + +    C     DE + 
Sbjct: 138 MLGDHKVPAEEVLVAVELLKEKAEEVYRLYQNSPLSSHPVVALSELSALCANSCPDERTF 197

Query: 62  VLSFLTGRGKALYLSISKNEFTEGVKVSLSP-AAVSSISSLDYDVLHLIWTVEKLQLQLD 120
            L  L  + K   +++ +    + VK +  P A VS ++ +D  V  L+ + + L  +++
Sbjct: 198 YLVLLQLQ-KEKRVTVLEQNGEKIVKFARGPHAKVSPVNDVDVGVYQLMQSEQLLSRKVE 256

Query: 121 IIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAE 180
            + +  E  ++ A  +  +G K +ALR  K  + T++  E   + L+ V+ +L  I  ++
Sbjct: 257 SLSQESERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQ 316

Query: 181 STKKVSEAIQIGAQAIK--KNKISVEELQLCLEELEESIDLQKQAEKVIVPSYTG---ID 235
           + + V  A Q G  A+K     ++VE+ +  +++++E  D Q +  + +    T     D
Sbjct: 317 TDQMVFNAYQAGVGALKLSMKDVTVEKAESLVDQIQELCDTQDEVSQTLAGGVTNGLDFD 376

Query: 236 DEDIEEEFKKLEQEVECE 253
            E++E+E   L Q+   E
Sbjct: 377 SEELEKELDILLQDTTTE 394

Plays a role in the endosomal sorting pathway.
Mus musculus (taxid: 10090)

>sp|Q8WUX9|CHMP7_HUMAN Charged multivesicular body protein 7 OS=Homo sapiens GN=CHMP7 PE=1 SV=1

 Score = 60.1 bits (144), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 122/242 (50%), Gaps = 9/242 (3%)

Query: 16  VILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQ--DEASAVLSFLTGRGKAL 73
           ++ +E+LK+KA+EV +L   S  +S  ++ + +    C     DE +  L  L  + K  
Sbjct: 150 LVAVELLKEKAEEVYRLYQNSPLSSHPVVALSELSTLCANSCPDERTFYLVLLQLQ-KEK 208

Query: 74  YLSISKNEFTEGVKVSLSP-AAVSSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKS 132
            +++ +    + VK +  P A VS ++ +D  V  L+ + + L  +++ + +  E  ++ 
Sbjct: 209 RVTVLEQNGEKIVKFARGPRAKVSPVNDVDVGVYQLMQSEQLLSRKVESLSQEAERCKEE 268

Query: 133 ALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIG 192
           A  +  +G K +ALR  K  + T++  E   + L+ V+ +L  I  +++ + V  A Q G
Sbjct: 269 ARRACRAGKKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQTDQMVFNAYQAG 328

Query: 193 AQAIK--KNKISVEELQLCLEELEESIDLQKQAEKVIVPSYTG---IDDEDIEEEFKKLE 247
             A+K     ++VE+ +  +++++E  D Q +  + +    T     D E++E+E   L 
Sbjct: 329 VGALKLSMKDVTVEKAESLVDQIQELCDTQDEVSQTLAGGVTNGLDFDSEELEKELDILL 388

Query: 248 QE 249
           Q+
Sbjct: 389 QD 390

Plays a role in the endosomal sorting pathway.

Homo sapiens (taxid: 9606)

>sp|Q5R812|CHMP7_PONAB Charged multivesicular body protein 7 OS=Pongo abelii GN=CHMP7 PE=2 SV=1

 Score = 60.1 bits (144), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 122/242 (50%), Gaps = 9/242 (3%)

Query: 16  VILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQ--DEASAVLSFLTGRGKAL 73
           ++ +E+LK+KA+EV +L   S  +S  ++ + +    C     DE +  L  L  + K  
Sbjct: 150 LVAVELLKEKAEEVYRLYQSSPLSSHPVVALSELSTLCANSCPDERTFYLVLLQLQ-KEK 208

Query: 74  YLSISKNEFTEGVKVSLSP-AAVSSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKS 132
            +++ +    + VK +  P A VS ++ +D  V  L+ + + L  +++ + +  E  ++ 
Sbjct: 209 RVTVLEQNGEKIVKFARGPHAKVSPVNDVDVGVYQLMQSEQLLSRKVESLSQEAERCKEE 268

Query: 133 ALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIG 192
           A  +  +G K +ALR  K  + T++  E   + L+ V+ +L  I  +++ + V  A Q G
Sbjct: 269 ARRACRAGKKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQTDQMVFNAYQAG 328

Query: 193 AQAIK--KNKISVEELQLCLEELEESIDLQKQAEKVIVPSYTG---IDDEDIEEEFKKLE 247
             A+K     ++VE+ +  +++++E  D Q +  + +    T     D E++E+E   L 
Sbjct: 329 VGALKLSMKDVTVEKAESLVDQIQELCDTQDEVSQTLAGGVTNGLDFDSEELEKELDILL 388

Query: 248 QE 249
           Q+
Sbjct: 389 QD 390

Plays a role in the endosomal sorting pathway.

Pongo abelii (taxid: 9601)

>sp|Q5ZJB7|CHMP7_CHICK Charged multivesicular body protein 7 OS=Gallus gallus GN=CHMP7 PE=2 SV=1

 Score = 56.2 bits (134), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 123/246 (50%), Gaps = 17/246 (6%)

Query: 16  VILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGG--QDEASAVLSFLTGRGKAL 73
           +I +E+L++KA+EV +L   S  +S  ++ + + +  C G   DE +  L  L  + +  
Sbjct: 148 LIYVELLQEKAEEVYRLYQNSVLSSHPVVALSELRSLCAGVCPDERTFYLLLLQLQKEKK 207

Query: 74  YLSISKN-----EFTEGVKVSLSPAAVSSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEM 128
              + +N     +F  G+   +SP     ++ +D  V  L+ + + L  +++ + +  E 
Sbjct: 208 VTILEQNGEKIVKFARGLHAKVSP-----MNDVDIGVYQLMQSEQLLSQKVESLSQEAEK 262

Query: 129 SRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEA 188
            +  A ++  +G K +ALR  K  + T+   E+  S L+ V+ +L  I  +++ + V  A
Sbjct: 263 CKDDARSACRAGKKQLALRCLKSKRRTERRIEELHSKLDAVQGILDRIYASQTDQMVFNA 322

Query: 189 IQIGAQAIK--KNKISVEELQLCLEELEESIDLQKQAEKVIVPSYTG---IDDEDIEEEF 243
            Q G  A+K     ++VE+ +  +++++E  D Q +  + +  +      +D E++E+E 
Sbjct: 323 YQAGVGALKLSMKDVTVEKAENLVDQIQELCDTQDEVAQTLAGAGVNGLEMDSEELEKEL 382

Query: 244 KKLEQE 249
             L Q+
Sbjct: 383 DSLLQD 388

Plays a role in the endosomal sorting pathway.

Gallus gallus (taxid: 9031)

>sp|Q5FW14|CHMP7_XENTR Charged multivesicular body protein 7 OS=Xenopus tropicalis GN=chmp7 PE=2 SV=1

 Score = 48.9 bits (115), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 115/254 (45%), Gaps = 26/254 (10%)

Query: 8   PEILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQDEASAVLSFLT 67
           PEI+ +   ++++  +      + LLSE    + C        + C      + VL  L 
Sbjct: 138 PEIIKERAALVLQRYQSSPLRALPLLSEEEVRTLCA-------EICPNPSALNLVLLQLQ 190

Query: 68  GRGKALYLSISKNEFTEGVKVSLSPAAVSSISSLDYDVLHLIWT----VEKLQLQLDIID 123
           G  K   L  +  +  + V+VS+    V  IS  D  +  L  +     E+LQ   +  D
Sbjct: 191 GDKKICVLERAGKKLVKFVRVSV--GQVDPISESDLGIYELQQSEKLLSERLQSAGEESD 248

Query: 124 RHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNR---VEEVLSLIENAE 180
           R  E +R    A    GNK  ALR  ++ KL +    + T L N+   V+ +L  I  AE
Sbjct: 249 RLTEEARTYNRA----GNKHQALRCLRKRKLLER---RITELQNKQDTVQGILERIAAAE 301

Query: 181 STKKVSEAIQIGAQAIK--KNKISVEELQLCLEELEESIDLQKQAEKVIVP-SYTGIDDE 237
           + +KV  A Q+G  A+K     +++E+ +  +++++E  DLQ    + +   S   ID E
Sbjct: 302 TDRKVVSAYQMGVSALKLALKDVTMEKAESIVDQIQEYCDLQDDLSQTLASVSDADIDSE 361

Query: 238 DIEEEFKKLEQEVE 251
           D+E+E   + Q  E
Sbjct: 362 DLEKELNDILQNKE 375

Plays a role in the endosomal sorting pathway.

Xenopus tropicalis (taxid: 8364)

>sp|P0C0A3|CHMP6_MOUSE Charged multivesicular body protein 6 OS=Mus musculus GN=Chmp6 PE=2 SV=2

 Score = 47.8 bits (112), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 98/197 (49%), Gaps = 18/197 (9%)

Query: 96  SSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLT 155
           S ++  D  +L L    +KL+     + +  E  R  A   L  G K      AK L   
Sbjct: 11  SRVTEQDRAILQLKQQRDKLRQYQKRVTQQLERERALARQLLRDGRKE----RAKLLLKK 66

Query: 156 KESREKCTSLLNRVEEVLS----LIENAESTK---KVSEAIQIGAQAIKK--NKISVEEL 206
           K  RE+   LL+R E  +S    ++++ E T+   KV E +Q+G + + K    +S+EE+
Sbjct: 67  KRYREQ---LLDRTENQISSLEAMVQSIEFTQIEMKVMEGLQVGNECLNKMHQVMSIEEV 123

Query: 207 QLCLEELEESIDLQKQAEKVIVPSYTGIDDEDIEEEFKKLEQE-VEC-ERPKPTVSKTGV 264
           +  L+E +E+++ Q+Q ++++  ++T  D++ I EE   + QE +E  E P   +     
Sbjct: 124 ERILDETQEAVEYQRQIDELLAGNFTQEDEDAILEELNAITQEQMELPEVPSEPLPDRNP 183

Query: 265 NEPAASESAESLRVAFS 281
             PA + S ++  VA S
Sbjct: 184 EAPAKARSRQAELVAAS 200

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis. ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4. In the ESCRT-III complex, it probably serves as an acceptor for the ESCRT-II complex on endosomal membranes.

Mus musculus (taxid: 10090)

>sp|Q96FZ7|CHMP6_HUMAN Charged multivesicular body protein 6 OS=Homo sapiens GN=CHMP6 PE=1 SV=3

 Score = 46.6 bits (109), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 95/199 (47%), Gaps = 21/199 (10%)

Query: 96  SSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLT 155
           S ++  D  +L L    +KL+     I +  E  R  A   L  G K  A       KL 
Sbjct: 11  SRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGRKERA-------KLL 63

Query: 156 KESREKCTSLLNRVEEVLS----LIENAESTK---KVSEAIQIGAQAIKK--NKISVEEL 206
            + +     LL+R E  +S    ++++ E T+   KV E +Q G + + K    +S+EE+
Sbjct: 64  LKKKRYQEQLLDRTENQISSLEAMVQSIEFTQIEMKVMEGLQFGNECLNKMHQVMSIEEV 123

Query: 207 QLCLEELEESIDLQKQAEKVIVPSYTGIDDEDIEEEFKKLEQEVECERP----KPTVSKT 262
           +  L+E +E+++ Q+Q ++++  S+T  D++ I EE   + QE + E P    +P   K 
Sbjct: 124 ERILDETQEAVEYQRQIDELLAGSFTQEDEDAILEELSAITQE-QIELPEVPSEPLPEKI 182

Query: 263 GVNEPAASESAESLRVAFS 281
             N P  +   ++  VA S
Sbjct: 183 PENVPVKARPRQAELVAAS 201

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis and the budding of enveloped viruses (HIV-1 and other lentiviruses). ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4. In the ESCRT-III complex, it probably serves as an acceptor for the ESCRT-II complex on endosomal membranes.

Homo sapiens (taxid: 9606)

>sp|Q7T0X5|CHMP7_XENLA Charged multivesicular body protein 7 OS=Xenopus laevis GN=chmp7 PE=2 SV=1

 Score = 46.2 bits (108), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 116/247 (46%), Gaps = 17/247 (6%)

Query: 16  VILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQ----DKCGGQDEASAVLSFLTGRGK 71
           +++ EV+K++A  V++    S + S  ++  ++      + C      + VL  L G  K
Sbjct: 135 LVIPEVIKERAALVLQRYQSSTFRSFPLLCEEEVHTLCAEICPNPSALNLVLLQLQGDKK 194

Query: 72  ALYLSISKNEFTEGVKVSLSPAAVSSISSLDYDVLHLI----WTVEKLQLQLDIIDRHYE 127
              L  +  +  + V+VS+    V  IS  D  +  L        E+LQ   +  +R  E
Sbjct: 195 ICVLERAGQKLVKFVRVSV--GQVEPISESDLGIYQLQQGEKLLSERLQSAGEESNRLTE 252

Query: 128 MSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVSE 187
            +R    A    GNK  ALR  ++ KL +    +  +  + ++ +L  I  AE+ +KV  
Sbjct: 253 EARTYNRA----GNKNQALRCLRKRKLVERRITELQNKQDNIQGILERISAAETDRKVVS 308

Query: 188 AIQIGAQAIKK--NKISVEELQLCLEELEESIDLQKQAEKVIVP-SYTGIDDEDIEEEFK 244
           A Q+G  A+K+    +++E+ +  +++++E  DLQ    + +   +   +D +D+E E  
Sbjct: 309 AYQMGVSALKQALKDVTLEKAESIVDQIQEYCDLQDDLSQTLSSVTDADVDSDDLERELN 368

Query: 245 KLEQEVE 251
           ++ Q  E
Sbjct: 369 EILQNEE 375

Plays a role in the endosomal sorting pathway.

Xenopus laevis (taxid: 8355)

>sp|Q5R861|CHMP6_PONAB Charged multivesicular body protein 6 OS=Pongo abelii GN=CHMP6 PE=2 SV=3

 Score = 45.8 bits (107), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 16/163 (9%)

Query: 96  SSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLT 155
           S ++  D  +L L    +KL+     I +  E  R  A   L  G K  A       KL 
Sbjct: 11  SRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGRKERA-------KLL 63

Query: 156 KESREKCTSLLNRVEEVLS----LIENAESTK---KVSEAIQIGAQAIKK--NKISVEEL 206
            + +     LL+R E  +S    ++++ E T+   KV E +Q G + + K    +S+EE+
Sbjct: 64  LKKKRYQEQLLDRTENQISSLEAMVQSIEFTQIEMKVMEGLQFGNECLNKMHQVMSIEEV 123

Query: 207 QLCLEELEESIDLQKQAEKVIVPSYTGIDDEDIEEEFKKLEQE 249
           +  L+E +E+++ Q+Q ++++  S+T  D++ I EE   + QE
Sbjct: 124 ERILDETQEAVEYQRQIDELLAGSFTQEDEDAILEELSAITQE 166

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis and the budding of enveloped viruses (lentiviruses). ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4. In the ESCRT-III complex, it probably serves as an acceptor for the ESCRT-II complex on endosomal membrane.

Pongo abelii (taxid: 9601)

>sp|Q6PBQ2|CHMP7_DANRE Charged multivesicular body protein 7 OS=Danio rerio GN=chmp7 PE=2 SV=1

 Score = 45.4 bits (106), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/223 (20%), Positives = 118/223 (52%), Gaps = 6/223 (2%)

Query: 10  ILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCG--GQDEASAVLSFLT 67
           + L++  +++E++K+KA E++     S  ++  +++ ++ +        DE++  ++ L 
Sbjct: 135 VPLEESFVVIELVKEKAAELLAAYRGSALSARSLLSFQELRSLSSHICPDESTLCMALLQ 194

Query: 68  GRGKALYLSISKNEFTEGVKVSLSPAA-VSSISSLDYDVLHLIWTVEKLQLQLDIIDRHY 126
            + +  ++++S +E  + VK S +    VS +S +D  +  L  + + L+ +++ +    
Sbjct: 195 LQ-REKHVTVSLHEGEKLVKFSQAGQGRVSPVSEVDLGIYQLQCSEKLLEERVEALGHEA 253

Query: 127 EMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVS 186
           E  ++ A + L  G K+ ALR  +  K  ++  ++  + L  V+ +L  I N+++ + V 
Sbjct: 254 EKCKQQAKSLLKEGKKSQALRCLRGSKRVEKKADRLFAQLETVKGILDRIANSQTDRLVM 313

Query: 187 EAIQIGAQAIKKN--KISVEELQLCLEELEESIDLQKQAEKVI 227
           +A Q G  A++ +   ++VE  +  +++++E  D Q +  + +
Sbjct: 314 QAYQAGVAALRISLKGVTVERAENLVDQIQELCDTQDEVNQTL 356

Plays a role in the endosomal sorting pathway.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	315
255548225	438	Protein CHMP7, putative [Ricinus communi	0.993	0.714	0.601	2e-94
147768433	418	hypothetical protein VITISV_004029 [Viti	0.980	0.739	0.623	2e-92
297744076	438	unnamed protein product [Vitis vinifera]	0.996	0.716	0.614	3e-91
359479983	478	PREDICTED: charged multivesicular body p	0.996	0.656	0.614	4e-91
224068731	436	predicted protein [Populus trichocarpa]	0.996	0.720	0.608	5e-87
356572852	433	PREDICTED: charged multivesicular body p	0.926	0.674	0.602	5e-85
357511585	429	Charged multivesicular body protein [Med	0.895	0.657	0.604	2e-83
449522224	440	PREDICTED: LOW QUALITY PROTEIN: charged	0.904	0.647	0.549	6e-70
449467433	440	PREDICTED: charged multivesicular body p	0.904	0.647	0.549	7e-70
297821110	418	predicted protein [Arabidopsis lyrata su	0.952	0.717	0.487	5e-66

>gi|255548225|ref|XP_002515169.1| Protein CHMP7, putative [Ricinus communis] gi|223545649|gb|EEF47153.1| Protein CHMP7, putative [Ricinus communis]

 Score =  351 bits (901), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 192/319 (60%), Positives = 243/319 (76%), Gaps = 6/319 (1%)

Query: 3   RSAATPEILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQDEASAV 62
           RS  TP++LL+D++IL  +LK+KAD+VIKLLSE+HWT+SC++TM+KFQD CGG +EAS V
Sbjct: 120 RSTTTPDLLLEDNLILTPLLKEKADQVIKLLSENHWTTSCVVTMRKFQDMCGGPNEASVV 179

Query: 63  LSFLTGRGKALYLSISKNEFTEGVKVSLSPAAVSSISSLDYDVLHLIWTVEKLQLQLDII 122
           LS+ +G GKA YLS+ K EF EG+KVSLS A V +ISSLD+DVLHLIWT EKLQ Q+D+I
Sbjct: 180 LSYFSGVGKAQYLSVCKKEFVEGIKVSLSSALVPAISSLDFDVLHLIWTAEKLQQQIDVI 239

Query: 123 DRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAEST 182
           D+ YE+SR SALA L SGNK +ALRHA+ +KL  +SREKCTSL NRVEEVL++I +AEST
Sbjct: 240 DQRYELSRNSALAYLKSGNKKMALRHARDMKLASDSREKCTSLFNRVEEVLNIIADAEST 299

Query: 183 KKVSEAIQIGAQAIKKNKISVEELQLCLEELEESIDLQKQAEKVI--VPSYTGIDDEDIE 240
           KKV+EAIQIGAQA+K+NKI+VEE+ LCLEELEE+ID QKQ EK +   PSYT I+DEDIE
Sbjct: 300 KKVTEAIQIGAQAMKQNKITVEEVDLCLEELEENIDSQKQVEKALESTPSYTVIEDEDIE 359

Query: 241 EEFKKLEQE---VECERPKPTVSKTGVN-EPAASESAESLRVAFSTIGLNDGQATALAIS 296
           EEFKKLE E   V+ + P P +  +  + E   S S +SL  A S + L D         
Sbjct: 360 EEFKKLEMEVGTVDLQSPVPRIGMSSTSGETDNSVSTDSLSDALSNLKLQDALPGDCTDQ 419

Query: 297 DTVVPDRSNESKHPMLESA 315
             +   R+N+SK+  LE+A
Sbjct: 420 VPLEATRTNDSKNLTLEAA 438

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147768433|emb|CAN69261.1| hypothetical protein VITISV_004029 [Vitis vinifera]

 Score =  345 bits (885), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 197/316 (62%), Positives = 238/316 (75%), Gaps = 7/316 (2%)

Query: 7   TPEILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQDEASAVLSFL 66
           + E++ +DH+IL+ +LKDK  EV+K+LSES WTSSC+ITMKKFQD CGG  EASAVLS+L
Sbjct: 103 SAEVMFEDHLILLPLLKDKTVEVVKVLSESQWTSSCVITMKKFQDICGGTREASAVLSYL 162

Query: 67  TGRGKALYLSISKNEFTEGVKVSLSPAAVSSISSLDYDVLHLIWTVEKLQLQLDIIDRHY 126
           +G GKA YLSISK E  EGVKVSLS AAVS  +SLD D+LHL WT E LQ QLD+ID+  
Sbjct: 163 SGCGKAQYLSISKKELIEGVKVSLSTAAVSGTTSLDLDILHLTWTTENLQQQLDVIDQRC 222

Query: 127 EMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVS 186
           E+S+K+ALASL+SGNK VALRHAK LKL  ESREKC S LNRVEEVLSLI NAESTKKVS
Sbjct: 223 EVSKKAALASLNSGNKKVALRHAKALKLASESREKCISFLNRVEEVLSLIANAESTKKVS 282

Query: 187 EAIQIGAQAIKKNKISVEELQLCLEELEESIDLQKQAEKVIV---PSYTGIDDEDIEEEF 243
           EAIQIGAQAIK+N+I VEE+Q CL+EL +SID QKQ ++ +    PSY  I+DEDIEEEF
Sbjct: 283 EAIQIGAQAIKENRIDVEEVQRCLQELGDSIDSQKQVQEALAESDPSYADIEDEDIEEEF 342

Query: 244 KKLEQEVECERPKPTVSKTGVNEPA----ASESAESLRVAFSTIGLNDGQATALAISDTV 299
           +KLE E+  + P+  VS+ GV+  A    ASES++SL  A S + L D  A    I D+ 
Sbjct: 343 RKLELELGNQNPQILVSQAGVDTAAGETEASESSKSLCDALSDLKLADNAARGSTILDST 402

Query: 300 VPDRSNESKHPMLESA 315
              R N SK+   E+A
Sbjct: 403 GSKRDNISKNLKPEAA 418

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744076|emb|CBI37046.3| unnamed protein product [Vitis vinifera]

 Score =  341 bits (874), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 198/322 (61%), Positives = 240/322 (74%), Gaps = 8/322 (2%)

Query: 1   MARSAATPEILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQDEAS 60
           M RS  + E++ +DH+IL+ +LKDK  EV+K+LSES WTSSC+ITMKKFQD CGG  EAS
Sbjct: 118 MVRST-SAEVMFEDHLILLPLLKDKTVEVVKVLSESQWTSSCVITMKKFQDICGGTREAS 176

Query: 61  AVLSFLTGRGKALYLSISKNEFTEGVKVSLSPAAVSSISSLDYDVLHLIWTVEKLQLQLD 120
           AVLS+L+G GKA YLSISK E  EGVKVSLS AAVS  +SLD DVLHL WT E LQ QLD
Sbjct: 177 AVLSYLSGCGKAQYLSISKKELIEGVKVSLSAAAVSGTTSLDLDVLHLTWTTENLQQQLD 236

Query: 121 IIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAE 180
           +ID+  E+S+K+ALASL+SGNK VALRHAK LKL  ESREKC S LNRVEEVLSLI NAE
Sbjct: 237 VIDQRCEVSKKAALASLNSGNKKVALRHAKALKLASESREKCISFLNRVEEVLSLIANAE 296

Query: 181 STKKVSEAIQIGAQAIKKNKISVEELQLCLEELEESIDLQKQAEKVIV---PSYTGIDDE 237
           STKKVSEAIQIGA+AI++N+I VEE+Q CL+EL +SID QKQ E+ +    PSY  I+DE
Sbjct: 297 STKKVSEAIQIGARAIQENRIDVEEVQRCLQELGDSIDSQKQVEEALAESDPSYVDIEDE 356

Query: 238 DIEEEFKKLEQEVECERPKPTVSKTGVNEPA----ASESAESLRVAFSTIGLNDGQATAL 293
           DIEEEF+KLE E+  +  +  VS+ GV+  A    ASES++SL  A S + L D      
Sbjct: 357 DIEEEFRKLELELGNQNLQILVSQAGVDTAAGETEASESSKSLCDALSDLKLADNATRGS 416

Query: 294 AISDTVVPDRSNESKHPMLESA 315
            I ++    R N SK+  LE+A
Sbjct: 417 TILNSTGSKRDNISKNLKLEAA 438

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479983|ref|XP_002273698.2| PREDICTED: charged multivesicular body protein 7 [Vitis vinifera]

 Score =  340 bits (873), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 198/322 (61%), Positives = 240/322 (74%), Gaps = 8/322 (2%)

Query: 1   MARSAATPEILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQDEAS 60
           M RS  + E++ +DH+IL+ +LKDK  EV+K+LSES WTSSC+ITMKKFQD CGG  EAS
Sbjct: 158 MVRST-SAEVMFEDHLILLPLLKDKTVEVVKVLSESQWTSSCVITMKKFQDICGGTREAS 216

Query: 61  AVLSFLTGRGKALYLSISKNEFTEGVKVSLSPAAVSSISSLDYDVLHLIWTVEKLQLQLD 120
           AVLS+L+G GKA YLSISK E  EGVKVSLS AAVS  +SLD DVLHL WT E LQ QLD
Sbjct: 217 AVLSYLSGCGKAQYLSISKKELIEGVKVSLSAAAVSGTTSLDLDVLHLTWTTENLQQQLD 276

Query: 121 IIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAE 180
           +ID+  E+S+K+ALASL+SGNK VALRHAK LKL  ESREKC S LNRVEEVLSLI NAE
Sbjct: 277 VIDQRCEVSKKAALASLNSGNKKVALRHAKALKLASESREKCISFLNRVEEVLSLIANAE 336

Query: 181 STKKVSEAIQIGAQAIKKNKISVEELQLCLEELEESIDLQKQAEKVIV---PSYTGIDDE 237
           STKKVSEAIQIGA+AI++N+I VEE+Q CL+EL +SID QKQ E+ +    PSY  I+DE
Sbjct: 337 STKKVSEAIQIGARAIQENRIDVEEVQRCLQELGDSIDSQKQVEEALAESDPSYVDIEDE 396

Query: 238 DIEEEFKKLEQEVECERPKPTVSKTGVNEPA----ASESAESLRVAFSTIGLNDGQATAL 293
           DIEEEF+KLE E+  +  +  VS+ GV+  A    ASES++SL  A S + L D      
Sbjct: 397 DIEEEFRKLELELGNQNLQILVSQAGVDTAAGETEASESSKSLCDALSDLKLADNATRGS 456

Query: 294 AISDTVVPDRSNESKHPMLESA 315
            I ++    R N SK+  LE+A
Sbjct: 457 TILNSTGSKRDNISKNLKLEAA 478

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068731|ref|XP_002302811.1| predicted protein [Populus trichocarpa] gi|222844537|gb|EEE82084.1| predicted protein [Populus trichocarpa]

 Score =  327 bits (837), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 194/319 (60%), Positives = 242/319 (75%), Gaps = 5/319 (1%)

Query: 1   MARSAATPEI-LLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQDEA 59
           M RS  TPEI +L+DH+ L  +LKDK  ++IK LSESHWTSSCIITM KFQ  CGG  EA
Sbjct: 119 MVRSPVTPEIIMLEDHLFLTPLLKDKTAQIIKCLSESHWTSSCIITMSKFQGMCGGPSEA 178

Query: 60  SAVLSFLTGRGKALYLSISKNEFTEGVKVSLSPAAVSSISSLDYDVLHLIWTVEKLQLQL 119
           + +LS+L+G GKA Y SISK E  EGVK+SLS A+V +ISSLD DVLHLIWT +KL+ Q+
Sbjct: 179 APLLSYLSGLGKAQYFSISK-EVIEGVKISLSSASVPAISSLDLDVLHLIWTAQKLEDQI 237

Query: 120 DIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENA 179
           D+IDR YEMSRKSALASL+SGNK VALRHA+++KL  ESRE+CTSLLNRVEEVL++I NA
Sbjct: 238 DVIDRRYEMSRKSALASLNSGNKKVALRHAREMKLALESRERCTSLLNRVEEVLNVIANA 297

Query: 180 ESTKKVSEAIQIGAQAIKKNKISVEELQLCLEELEESIDLQKQAEKVIVPS-YTGIDDED 238
           EST+KV+EAI+IGA+A+K+NKI+VEE++ CLEELEESID QKQ EK +  +  +GI+DED
Sbjct: 298 ESTQKVTEAIRIGAEAMKQNKITVEEVENCLEELEESIDAQKQVEKALESNPISGIEDED 357

Query: 239 IEEEFKKLEQEVECERPKPTVSKTG--VNEPAASESAESLRVAFSTIGLNDGQATALAIS 296
           IEEE +KLE E+E E  + +  + G    E  A  S +SL  A S + L+DG A      
Sbjct: 358 IEEELEKLELELESENLQISKVEVGNTSGEMDALGSPDSLTDALSNLKLHDGSARGSVSQ 417

Query: 297 DTVVPDRSNESKHPMLESA 315
            +  P R+  SKH MLE+A
Sbjct: 418 KSPFPTRTKNSKHAMLEAA 436

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572852|ref|XP_003554579.1| PREDICTED: charged multivesicular body protein 7-like [Glycine max]

 Score =  320 bits (820), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 179/297 (60%), Positives = 226/297 (76%), Gaps = 5/297 (1%)

Query: 7   TPEILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQDEASAVLSFL 66
           TP+I+ +  VI+  +LKDKA EV+K LSESHW SSCI+TMKKFQD CGG DEAS +L +L
Sbjct: 123 TPDIMAEQCVIVTAMLKDKAAEVVKHLSESHWNSSCIVTMKKFQDMCGGPDEASVMLRYL 182

Query: 67  TGRGKALYLSISKNEFTEGVKVSLSPAAVSSISSLDYDVLHLIWTVEKLQLQLDIIDRHY 126
           +G   A YLS++K +F EGVKVSLS  A+SSI++LDYDVLHLIWT EKLQLQLD+ DR Y
Sbjct: 183 SGCRTAQYLSVNKKDFLEGVKVSLSAGALSSITNLDYDVLHLIWTTEKLQLQLDVTDRRY 242

Query: 127 EMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVS 186
           E+ RKSALASL SGNK +AL +A++LKL  +SREKC+SLLNRVEEVLS+I +AESTKKV+
Sbjct: 243 ELLRKSALASLQSGNKKLALNYARELKLVTQSREKCSSLLNRVEEVLSVIADAESTKKVT 302

Query: 187 EAIQIGAQAIKKNKISVEELQLCLEELEESIDLQKQAEKVI--VPSYTGIDDEDIEEEFK 244
           EA+QIGA+AIK+NKISVE++ LCL +++ESID  K+ E  +  +PSY  I+DEDIEEEFK
Sbjct: 303 EAMQIGARAIKENKISVEDVDLCLRDIQESIDSHKEVENALERMPSYVDIEDEDIEEEFK 362

Query: 245 KLEQEVECERPKPTVSKTGVNEPA--ASESAESLRVAFSTIGLNDGQATALAISDTV 299
           KLE  V  +   P + K   NE    ASE+A+ +   FS + L+D  A    I+  V
Sbjct: 363 KLELAVGQDAQVPALEK-AFNEEGRMASEAADFISDTFSNLKLSDRPAEKPGITQAV 418

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511585|ref|XP_003626081.1| Charged multivesicular body protein [Medicago truncatula] gi|355501096|gb|AES82299.1| Charged multivesicular body protein [Medicago truncatula]

 Score =  315 bits (807), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 173/286 (60%), Positives = 224/286 (78%), Gaps = 4/286 (1%)

Query: 6   ATPEILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQDEASAVLSF 65
           ATP+I+ ++ V+L+ +LKDKA EV+K LSESHW SSCIITMKKFQ+ CGG DEAS +L +
Sbjct: 121 ATPDIMAEESVVLIPMLKDKAAEVVKHLSESHWNSSCIITMKKFQEICGGPDEASVMLRY 180

Query: 66  LTGRGKALYLSISKNEFTEGVKVSLSPAAVSSISSLDYDVLHLIWTVEKLQLQLDIIDRH 125
           L+G G   YLS+ KNEF EGVK+SLS AA+S  S+LD DVL+LIWT+EKLQ QLD+IDR 
Sbjct: 181 LSGCGTTQYLSVLKNEFVEGVKISLSAAALSGASNLDCDVLYLIWTIEKLQQQLDVIDRR 240

Query: 126 YEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKV 185
            E+SRKSA+ASLHSGN+ +ALR+A++LKL  +SREKC+SLLNRVEEV  ++ +AESTK V
Sbjct: 241 CELSRKSAVASLHSGNRKLALRYARELKLVTQSREKCSSLLNRVEEVHGVVVDAESTKTV 300

Query: 186 SEAIQIGAQAIKKNKISVEELQLCLEELEESIDLQKQAEKVI--VPSYTGIDDEDIEEEF 243
           SEA+QIGA+AIK+NKISVE++ +CL +L+ESID QK+ EK +   PSYT I+DEDIEEE 
Sbjct: 301 SEAMQIGARAIKENKISVEDVDICLRDLQESIDSQKEVEKALEQTPSYTDINDEDIEEEL 360

Query: 244 KKLEQEVECERPKPTVSKTGVNE--PAASESAESLRVAFSTIGLND 287
           ++LE  +E E    T+ KT  +E   A  E++E L    S + L+D
Sbjct: 361 EELELALEKEAQVDTLEKTTTSEEGNATLEASELLSDTLSNLKLSD 406

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449522224|ref|XP_004168127.1| PREDICTED: LOW QUALITY PROTEIN: charged multivesicular body protein 7-like [Cucumis sativus]

 Score =  270 bits (690), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 161/293 (54%), Positives = 210/293 (71%), Gaps = 8/293 (2%)

Query: 1   MARSAATPEILLKD-HVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQDEA 59
           M  S   P+ LL+D +++L  VL+D+A EVIK LS S WTSSCIITM KFQ+ CGG DEA
Sbjct: 122 MGTSKKNPDSLLRDDYIVLACVLQDRAAEVIKCLSLSSWTSSCIITMVKFQNICGGPDEA 181

Query: 60  SAVLSFLTGRGKALYLSISKNEFTEGVKVSLSPAAVSSISSLDYDVLHLIWTVEKLQLQL 119
           + +LS+L   GKA +LS  K E  EGVKVSLS   V  I+SLDYD+LHL+WT EKLQ QL
Sbjct: 182 TVILSYLIECGKAKFLSKEKKELLEGVKVSLSATTVPGITSLDYDILHLVWTAEKLQQQL 241

Query: 120 DIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENA 179
           D+ID+ Y++S++SAL SL SGN+  AL+HA++LK+T ESREK  SL NRVEEVL+ I +A
Sbjct: 242 DVIDQRYDVSKQSALVSLKSGNRKTALKHARELKITTESREKVASLFNRVEEVLNAIADA 301

Query: 180 ESTKKVSEAIQIGAQAIKKNKISVEELQLCLEELEESIDLQKQAEKVI--VPSYTGIDDE 237
           E TK VSEAIQIGA+ +K+++++ ++LQ  L+ELE S+D+QKQ    I  VPS +  DDE
Sbjct: 302 ELTKTVSEAIQIGARVMKEHEVNWDQLQDSLQELEASVDIQKQVANAIDSVPSSSIPDDE 361

Query: 238 DIEEEFKKLEQEVECERP-KPTVSKTGVN----EPAASESAESLRVAFSTIGL 285
           DIEEEFKKLE E+   +    + S++GVN    E  A+   +SL  A S + L
Sbjct: 362 DIEEEFKKLELELTAGQILDASTSESGVNIATGETVAAVCDDSLSTALSNLKL 414

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449467433|ref|XP_004151427.1| PREDICTED: charged multivesicular body protein 7-like [Cucumis sativus]

 Score =  270 bits (690), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 161/293 (54%), Positives = 210/293 (71%), Gaps = 8/293 (2%)

Query: 1   MARSAATPEILLKD-HVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQDEA 59
           M  S   P+ LL+D +++L  VL+D+A EVIK LS S WTSSCIITM KFQ+ CGG DEA
Sbjct: 122 MGTSKKNPDSLLRDDYIVLACVLQDRAAEVIKCLSLSSWTSSCIITMVKFQNICGGPDEA 181

Query: 60  SAVLSFLTGRGKALYLSISKNEFTEGVKVSLSPAAVSSISSLDYDVLHLIWTVEKLQLQL 119
           + +LS+L   GKA +LS  K E  EGVKVSLS   V  I+SLDYD+LHL+WT EKLQ QL
Sbjct: 182 TVILSYLIECGKAKFLSKEKKELLEGVKVSLSATTVPGITSLDYDILHLVWTAEKLQQQL 241

Query: 120 DIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENA 179
           D+ID+ Y++S++SAL SL SGN+  AL+HA++LK+T ESREK  SL NRVEEVL+ I +A
Sbjct: 242 DVIDQRYDVSKQSALVSLKSGNRKTALKHARELKITTESREKVASLFNRVEEVLNAIADA 301

Query: 180 ESTKKVSEAIQIGAQAIKKNKISVEELQLCLEELEESIDLQKQAEKVI--VPSYTGIDDE 237
           E TK VSEAIQIGA+ +K+++++ ++LQ  L+ELE S+D+QKQ    I  VPS +  DDE
Sbjct: 302 ELTKTVSEAIQIGARVMKEHEVNWDQLQDSLQELEASVDIQKQVANAIDSVPSSSIPDDE 361

Query: 238 DIEEEFKKLEQEVECERP-KPTVSKTGVN----EPAASESAESLRVAFSTIGL 285
           DIEEEFKKLE E+   +    + S++GVN    E  A+   +SL  A S + L
Sbjct: 362 DIEEEFKKLELELTAGQILDASTSESGVNIATGETVAAVCDDSLSTALSNLKL 414

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821110|ref|XP_002878438.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297324276|gb|EFH54697.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  257 bits (657), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 154/316 (48%), Positives = 221/316 (69%), Gaps = 16/316 (5%)

Query: 1   MARSAATPEILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQDEAS 60
           M + +  PE +L++ ++++ +LK+KA +V+ +LSE HWTS+C++T+KKF++ C G +EAS
Sbjct: 118 MVQQSVKPEEILENKLVIVPLLKEKAADVVNILSEGHWTSTCVVTLKKFRNLCNGSNEAS 177

Query: 61  AVLSFLTGRGKALYLSISKNEFTEGVKVSLSPAAVSSISSLDYDVLHLIWTVEKLQLQLD 120
           AVLS L+G GKA  +SI++ E  EG+KVS S AA+ SIS+LD D+LHL+ T EKLQ QL+
Sbjct: 178 AVLSHLSGCGKAHKISINRGELIEGIKVSFSQAALPSISTLDCDILHLLRTTEKLQDQLE 237

Query: 121 IIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAE 180
           ++D+  E S+KSALASL SG++ VALRHA++LKL  ESREKCTSLLNRVEEVL+ I ++E
Sbjct: 238 VMDQRCEKSKKSALASLKSGHRKVALRHARELKLATESREKCTSLLNRVEEVLNTIADSE 297

Query: 181 STKKVSEAIQIGAQAIKKNKISVEELQLCLEELEESIDLQKQAEKVIVPS-YTGIDDEDI 239
           STK VSEAI+ GA+ +K  KIS +++   LEELEE+I+ QKQ EK +  + Y   DDE+I
Sbjct: 298 STKMVSEAIKTGARVMKDIKISADDVHDYLEELEETIESQKQVEKALESAPYPDTDDENI 357

Query: 240 EEEFKKLEQEVECERPKPTVSKTGVNEPAASESAESLRVAFSTIGLNDGQATALAISDTV 299
           E+E  +LE ++E E  +          PA  ++A+SL   FS + L   +        T+
Sbjct: 358 EDELLELEMDLESESSQVL--------PANLDTADSLTEMFSELKLGKTK-------QTL 402

Query: 300 VPDRSNESKHPMLESA 315
            P R  +S   +LE+A
Sbjct: 403 EPARMKDSGKKILEAA 418

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	315
TAIR|locus:2097998	462	AT3G62080 "AT3G62080" [Arabido	0.968	0.660	0.417	1.6e-54
UNIPROTKB|G1K2Y2	411	CHMP7 "Charged multivesicular	0.574	0.440	0.243	3.6e-06
UNIPROTKB|Q5ZJB7	448	CHMP7 "Charged multivesicular	0.574	0.404	0.243	4.2e-06
UNIPROTKB|A6H704	450	CHMP7 "Uncharacterized protein	0.574	0.402	0.232	1.2e-05
DICTYBASE|DDB_G0277133	477	DDB_G0277133 "SNF7 family prot	0.726	0.480	0.238	3.9e-05
UNIPROTKB|F1NRR9	438	CHMP7 "Charged multivesicular	0.574	0.413	0.241	4.4e-05
UNIPROTKB|Q8WUX9	453	CHMP7 "Charged multivesicular	0.574	0.399	0.227	4.6e-05
UNIPROTKB|Q5R812	453	CHMP7 "Charged multivesicular	0.574	0.399	0.227	4.6e-05
RGD|1308779	450	Chmp7 "charged multivesicular	0.574	0.402	0.227	6e-05
MGI|MGI:1913922	451	Chmp7 "charged multivesicular	0.574	0.401	0.227	6e-05

TAIR|locus:2097998 AT3G62080 "AT3G62080" [Arabidopsis thaliana (taxid:3702)]

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 132/316 (41%), Positives = 188/316 (59%)

Query:     1 MARSAATPEILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQDEAS 60
             M +     E +L++ ++L+ +LK+KA +V+K+LSE HWTS+C++T+KKF++ C G +EAS
Sbjct:   157 MVQQPVKQEEILENTLVLVPLLKEKAADVVKILSEGHWTSTCVVTLKKFRNLCNGSNEAS 216

Query:    61 AVLSFLTGRGKALYLSISKNEFTEGVKXXXXXXXXXXXXXXDYDVLHLIWTVEKLQLQLD 120
             AVLS L+G GKA  +SI++ E  EGVK              D D+LHL+ T EKLQ QL+
Sbjct:   217 AVLSHLSGCGKAHKISINRGELIEGVKVSFSQTALPGISTLDCDILHLLRTTEKLQDQLE 276

Query:   121 IIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAE 180
             ++D+  E S+KSALASL SG++ VALRHA++LK+  ESREKCTSLLNRVEEVL+ I ++E
Sbjct:   277 VMDQRCEKSKKSALASLKSGHRKVALRHARELKVVTESREKCTSLLNRVEEVLNTIADSE 336

Query:   181 STKKVSEAIQIGAQAIKKNKISVXXXXXXXXXXXXSIDLQKQAEKVIVPS-YTGIXXXXX 239
             STK VSEAI+ GA+ +K  KIS             +I+ QKQ EK +  + Y  I     
Sbjct:   337 STKMVSEAIKTGARVMKDIKISADDVHDYLEELEETIESQKQVEKALESAPYPDIDDEDI 396

Query:   240 XXXXXXXXXXXXXXRPKPTVSKTGVNEPAASESAESLRVAFSTIGLNDGQATALAISDTV 299
                                 S++    PA S++A+SL   FS + L  G+          
Sbjct:   397 EEELLELEMDLE--------SESSQVLPATSDTADSLTEMFSELKL--GKTKQTLEEQAT 446

Query:   300 VPDRSNESKHPMLESA 315
              P +  +S   +LE+A
Sbjct:   447 EPAQMKDSGKKILEAA 462

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0015031 "protein transport" evidence=IEA

GO:0007346 "regulation of mitotic cell cycle" evidence=RCA

UNIPROTKB|G1K2Y2 CHMP7 "Charged multivesicular body protein 7" [Gallus gallus (taxid:9031)]

 Score = 133 (51.9 bits), Expect = 3.6e-06, P = 3.6e-06
 Identities = 45/185 (24%), Positives = 88/185 (47%)

Query:    16 VILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGG--QDEASAVLSFLTGRGKAL 73
             +I +E+L++KA+EV +L   S  +S  ++ + + +  C G   DE +  L  L  + K  
Sbjct:   111 LIYVELLQEKAEEVYRLYQNSVLSSHPVVALSELRSLCAGVCPDERTFYLLLLQLQ-KEK 169

Query:    74 YLSISKNEFTEGVKXXXXXXXXXX-XXXXDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKS 132
              ++I +    + VK               D  V  L+ + + L  +++ + +  E  +  
Sbjct:   170 KVTILEQNGEKIVKFARGLHAKVSPMNDVDIGVYQLMQSEQLLSQKVESLSQEAEKCKDD 229

Query:   133 ALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIG 192
             A ++  +G K +ALR  K  + T+   E+  S L+ V+ +L  I  +++ + V  A Q G
Sbjct:   230 ARSACRAGKKQLALRCLKSKRRTERRIEELHSKLDAVQGILDRIYASQTDQMVFNAYQAG 289

Query:   193 AQAIK 197
               A+K
Sbjct:   290 VGALK 294

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|Q5ZJB7 CHMP7 "Charged multivesicular body protein 7" [Gallus gallus (taxid:9031)]

 Score = 133 (51.9 bits), Expect = 4.2e-06, P = 4.2e-06
 Identities = 45/185 (24%), Positives = 88/185 (47%)

Query:    16 VILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGG--QDEASAVLSFLTGRGKAL 73
             +I +E+L++KA+EV +L   S  +S  ++ + + +  C G   DE +  L  L  + K  
Sbjct:   148 LIYVELLQEKAEEVYRLYQNSVLSSHPVVALSELRSLCAGVCPDERTFYLLLLQLQ-KEK 206

Query:    74 YLSISKNEFTEGVKXXXXXXXXXX-XXXXDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKS 132
              ++I +    + VK               D  V  L+ + + L  +++ + +  E  +  
Sbjct:   207 KVTILEQNGEKIVKFARGLHAKVSPMNDVDIGVYQLMQSEQLLSQKVESLSQEAEKCKDD 266

Query:   133 ALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIG 192
             A ++  +G K +ALR  K  + T+   E+  S L+ V+ +L  I  +++ + V  A Q G
Sbjct:   267 ARSACRAGKKQLALRCLKSKRRTERRIEELHSKLDAVQGILDRIYASQTDQMVFNAYQAG 326

Query:   193 AQAIK 197
               A+K
Sbjct:   327 VGALK 331

GO:0000815 "ESCRT III complex" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0045324 "late endosome to vacuole transport" evidence=ISS

UNIPROTKB|A6H704 CHMP7 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 129 (50.5 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 43/185 (23%), Positives = 87/185 (47%)

Query:    16 VILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQ--DEASAVLSFLTGRGKAL 73
             ++ +E+LK+KA+EV +L   S  +S  ++ + +    C G   DE +  L  L  + K  
Sbjct:   150 LVAVELLKEKAEEVYRLYQNSPLSSHPVVALSELSTLCAGSCPDERTFYLVLLQLQ-KEK 208

Query:    74 YLSISKNEFTEGVKXXXXXXXXXX-XXXXDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKS 132
              +++ +    + VK               D  V  L+ + + L  +++ + +  E  ++ 
Sbjct:   209 RVTVLEQNGEKIVKFARGPHAKVSPVNDVDVGVYQLMQSEQLLSRKVESLSQEAERYKEE 268

Query:   133 ALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIG 192
             A  +  +G K +ALR  K  + T++  E   + L+ V+ +L  I  +++ + V  A Q G
Sbjct:   269 ARRACRAGKKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQTDQMVFNAYQAG 328

Query:   193 AQAIK 197
               A+K
Sbjct:   329 VGALK 333

GO:0045324 "late endosome to vacuole transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000815 "ESCRT III complex" evidence=IEA

DICTYBASE|DDB_G0277133 DDB_G0277133 "SNF7 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 125 (49.1 bits), Expect = 3.9e-05, P = 3.9e-05
 Identities = 59/247 (23%), Positives = 105/247 (42%)

Query:     6 ATPEILLKDHV--ILMEVLKDKADEVIK-LLSESHWTSSCIITM----KKFQDKCGGQDE 58
             +TP    + +V  IL E++KDKA+++ +  L   + T+  II+     K  +D    ++E
Sbjct:   135 STPNTETEKNVKFILPEMIKDKAEQLYQHQLKNMNSTTDNIISYINLEKSIKDWYITREE 194

Query:    59 ASAVLSFLTGRGKALYLS------ISKNEFTE---GVKXXXXXXXXXXXXXXDYDVLHLI 109
                +L  L    K L L+      I+ N   E   G+K              D+ +L L 
Sbjct:   195 LDLLLLVLFRDSKVLILTNNKIKNINNNNNGEDRIGIKFAFDGEKVQPIQETDFGILKLQ 254

Query:   110 WTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRV 169
              T E L+ Q   +    E    +   S+    K  AL   K+ KL +   EK  +    +
Sbjct:   255 TTYETLKQQESKLLTDIEEISNTIKESIRIKQKNHALLQLKKKKLLESILEKRATASTNI 314

Query:   170 EEVLSLIENAESTKKVSEAIQIGAQAIKK--NKISVXXXXXXXXXXXXSIDLQKQAEKVI 227
              E+L  IE+A+S +++ E++  G   +KK   +ISV            +I  Q++ +  +
Sbjct:   315 HEILFSIESAKSNQQIIESLCTGVSTLKKVNQEISVDQVDSILDDYQDAITNQREIDDAM 374

Query:   228 VPSYTGI 234
                +  +
Sbjct:   375 KSGFNSV 381

GO:0015031 "protein transport" evidence=IEA

GO:0045324 "late endosome to vacuole transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0000815 "ESCRT III complex" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F1NRR9 CHMP7 "Charged multivesicular body protein 7" [Gallus gallus (taxid:9031)]

 Score = 124 (48.7 bits), Expect = 4.4e-05, P = 4.4e-05
 Identities = 45/186 (24%), Positives = 88/186 (47%)

Query:    16 VILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGG--QDEASAVLSFLTGRGKAL 73
             +I +E+L++KA+EV +L   S  +S  ++ + + +  C G   DE +  L  L  + K  
Sbjct:   137 LIYVELLQEKAEEVYRLYQNSVLSSHPVVALSELRSLCAGVCPDERTFYLLLLQLQ-KEK 195

Query:    74 YLSISKNEFTEGVKXXXXXXXXXX-XXXXDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKS 132
              ++I +    + VK               D  V  L+ + + L  +++ + +  E  +  
Sbjct:   196 KVTILEQNGEKIVKFARGLHAKVSPMNDVDIGVYQLMQSEQLLSQKVESLSQEAEKCKDD 255

Query:   133 ALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVS-EAIQI 191
             A ++  +G K +ALR  K  + T+   E+  S L+ V+ +L  I  +++ + V   A Q 
Sbjct:   256 ARSACRAGKKQLALRCLKSKRRTERRIEELHSKLDAVQGILDRIYASQTDQMVVFNAYQA 315

Query:   192 GAQAIK 197
             G  A+K
Sbjct:   316 GVGALK 321

GO:0000815 "ESCRT III complex" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0045324 "late endosome to vacuole transport" evidence=IEA

UNIPROTKB|Q8WUX9 CHMP7 "Charged multivesicular body protein 7" [Homo sapiens (taxid:9606)]

 Score = 124 (48.7 bits), Expect = 4.6e-05, P = 4.6e-05
 Identities = 42/185 (22%), Positives = 86/185 (46%)

Query:    16 VILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQ--DEASAVLSFLTGRGKAL 73
             ++ +E+LK+KA+EV +L   S  +S  ++ + +    C     DE +  L  L  + K  
Sbjct:   150 LVAVELLKEKAEEVYRLYQNSPLSSHPVVALSELSTLCANSCPDERTFYLVLLQLQ-KEK 208

Query:    74 YLSISKNEFTEGVKXXXXXXXXXX-XXXXDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKS 132
              +++ +    + VK               D  V  L+ + + L  +++ + +  E  ++ 
Sbjct:   209 RVTVLEQNGEKIVKFARGPRAKVSPVNDVDVGVYQLMQSEQLLSRKVESLSQEAERCKEE 268

Query:   133 ALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIG 192
             A  +  +G K +ALR  K  + T++  E   + L+ V+ +L  I  +++ + V  A Q G
Sbjct:   269 ARRACRAGKKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQTDQMVFNAYQAG 328

Query:   193 AQAIK 197
               A+K
Sbjct:   329 VGALK 333

GO:0000815 "ESCRT III complex" evidence=IDA

GO:0045324 "late endosome to vacuole transport" evidence=IMP

GO:0008565 "protein transporter activity" evidence=IMP

GO:0005829 "cytosol" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0016197 "endosomal transport" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|Q5R812 CHMP7 "Charged multivesicular body protein 7" [Pongo abelii (taxid:9601)]

 Score = 124 (48.7 bits), Expect = 4.6e-05, P = 4.6e-05
 Identities = 42/185 (22%), Positives = 86/185 (46%)

Query:    16 VILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQ--DEASAVLSFLTGRGKAL 73
             ++ +E+LK+KA+EV +L   S  +S  ++ + +    C     DE +  L  L  + K  
Sbjct:   150 LVAVELLKEKAEEVYRLYQSSPLSSHPVVALSELSTLCANSCPDERTFYLVLLQLQ-KEK 208

Query:    74 YLSISKNEFTEGVKXXXXXXXXXX-XXXXDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKS 132
              +++ +    + VK               D  V  L+ + + L  +++ + +  E  ++ 
Sbjct:   209 RVTVLEQNGEKIVKFARGPHAKVSPVNDVDVGVYQLMQSEQLLSRKVESLSQEAERCKEE 268

Query:   133 ALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIG 192
             A  +  +G K +ALR  K  + T++  E   + L+ V+ +L  I  +++ + V  A Q G
Sbjct:   269 ARRACRAGKKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQTDQMVFNAYQAG 328

Query:   193 AQAIK 197
               A+K
Sbjct:   329 VGALK 333

GO:0000815 "ESCRT III complex" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0045324 "late endosome to vacuole transport" evidence=ISS

RGD|1308779 Chmp7 "charged multivesicular body protein 7" [Rattus norvegicus (taxid:10116)]

 Score = 123 (48.4 bits), Expect = 6.0e-05, P = 6.0e-05
 Identities = 42/185 (22%), Positives = 86/185 (46%)

Query:    16 VILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQ--DEASAVLSFLTGRGKAL 73
             ++ +E+LK+KA+EV +L   S  +S  ++ + +    C     DE +  L  L  + K  
Sbjct:   150 LVAVELLKEKAEEVYRLYQNSPLSSHPVVALSELSALCANSCPDERTFYLVLLQLQ-KEK 208

Query:    74 YLSISKNEFTEGVKXXXXXXXXXX-XXXXDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKS 132
              +++ +    + VK               D  V  L+ + + L  +++ + +  E  ++ 
Sbjct:   209 RVTVLEQNGEKIVKFARGPHAKVSPVNDVDVGVYQLMQSEQLLSQKVESLSQESERCKEE 268

Query:   133 ALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIG 192
             A  +  +G K +ALR  K  + T++  E   + L+ V+ +L  I  +++ + V  A Q G
Sbjct:   269 ARRACRAGKKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQTDQMVFNAYQAG 328

Query:   193 AQAIK 197
               A+K
Sbjct:   329 VGALK 333

GO:0000815 "ESCRT III complex" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0008565 "protein transporter activity" evidence=IEA;ISO

GO:0045324 "late endosome to vacuole transport" evidence=IEA;ISO

MGI|MGI:1913922 Chmp7 "charged multivesicular body protein 7" [Mus musculus (taxid:10090)]

 Score = 123 (48.4 bits), Expect = 6.0e-05, P = 6.0e-05
 Identities = 42/185 (22%), Positives = 86/185 (46%)

Query:    16 VILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQ--DEASAVLSFLTGRGKAL 73
             ++ +E+LK+KA+EV +L   S  +S  ++ + +    C     DE +  L  L  + K  
Sbjct:   150 LVAVELLKEKAEEVYRLYQNSPLSSHPVVALSELSALCANSCPDERTFYLVLLQLQ-KEK 208

Query:    74 YLSISKNEFTEGVKXXXXXXXXXX-XXXXDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKS 132
              +++ +    + VK               D  V  L+ + + L  +++ + +  E  ++ 
Sbjct:   209 RVTVLEQNGEKIVKFARGPHAKVSPVNDVDVGVYQLMQSEQLLSRKVESLSQESERCKEE 268

Query:   133 ALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIG 192
             A  +  +G K +ALR  K  + T++  E   + L+ V+ +L  I  +++ + V  A Q G
Sbjct:   269 ARRACRAGKKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQTDQMVFNAYQAG 328

Query:   193 AQAIK 197
               A+K
Sbjct:   329 VGALK 333

GO:0000815 "ESCRT III complex" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=ISO

GO:0015031 "protein transport" evidence=IEA

GO:0045324 "late endosome to vacuole transport" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00021941 hypothetical protein (436 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	315
pfam03357	169	pfam03357, Snf7, Snf7	2e-11

>gnl|CDD|146145 pfam03357, Snf7, Snf7

 Score = 61.1 bits (149), Expect = 2e-11
 Identities = 28/116 (24%), Positives = 62/116 (53%), Gaps = 5/116 (4%)

Query: 139 SGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKK 198
            GNK  AL   KQ K  ++  ++    L  +E+V   IENA++ ++V  A++ GA+A+K 
Sbjct: 37  KGNKDAALILLKQKKRYEKQLDQLDGQLANLEQVRMAIENAKTNQEVLNAMKGGAKAMKA 96

Query: 199 --NKISVEELQLCLEELEESIDLQKQAEKVI---VPSYTGIDDEDIEEEFKKLEQE 249
               + ++++   ++E+E+ ++   +  +++   +      D+E+++ E   L  E
Sbjct: 97  MNKNMDIDKIDDLMDEIEDQMEKADEISEMLSDTLDDADEEDEEELDAELDALLDE 152

This family of proteins are involved in protein sorting and transport from the endosome to the vacuole/lysosome in eukaryotic cells. Vacuoles/lysosomes play an important role in the degradation of both lipids and cellular proteins. In order to perform this degradative function, vacuoles/lysosomes contain numerous hydrolases which have been transported in the form of inactive precursors via the biosynthetic pathway and are proteolytically activated upon delivery to the vacuole/lysosome. The delivery of transmembrane proteins, such as activated cell surface receptors to the lumen of the vacuole/lysosome, either for degradation/downregulation, or in the case of hydrolases, for proper localisation, requires the formation of multivesicular bodies (MVBs). These late endosomal structures are formed by invaginating and budding of the limiting membrane into the lumen of the compartment. During this process, a subset of the endosomal membrane proteins is sorted into the forming vesicles. Mature MVBs fuse with the vacuole/lysosome, thereby releasing cargo containing vesicles into its hydrolytic lumen for degradation. Endosomal proteins that are not sorted into the intralumenal MVB vesicles are either recycled back to the plasma membrane or Golgi complex, or remain in the limiting membrane of the MVB and are thereby transported to the limiting membrane of the vacuole/lysosome as a consequence of fusion. Therefore, the MVB sorting pathway plays a critical role in the decision between recycling and degradation of membrane proteins. A few archaeal sequences are also present within this family. Length = 169

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	315
KOG2911	439	consensus Uncharacterized conserved protein [Funct	100.0
KOG2910	209	consensus Uncharacterized conserved protein predic	100.0
PTZ00446	191	vacuolar sorting protein SNF7-like; Provisional	100.0
PTZ00464	211	SNF-7-like protein; Provisional	99.96
KOG1656	221	consensus Protein involved in glucose derepression	99.96
PF03357	171	Snf7: Snf7; InterPro: IPR005024 This is a family o	99.92
KOG1655	218	consensus Protein involved in vacuolar protein sor	99.84
KOG3230	224	consensus Vacuolar assembly/sorting protein DID4 [	98.35
KOG3232	203	consensus Vacuolar assembly/sorting protein DID2 [	98.25
KOG3229	227	consensus Vacuolar sorting protein VPS24 [Intracel	98.17
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	97.96
PRK10698	222	phage shock protein PspA; Provisional	97.75
KOG3231	208	consensus Predicted assembly/vacuolar sorting prot	97.68
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	97.48
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	97.47
PTZ00464	211	SNF-7-like protein; Provisional	95.16
PF03357	171	Snf7: Snf7; InterPro: IPR005024 This is a family o	90.74
PTZ00446	191	vacuolar sorting protein SNF7-like; Provisional	89.33
smart00685	59	DM14 Repeats in fly CG4713, worm Y37H9A.3 and huma	88.5
KOG1655	218	consensus Protein involved in vacuolar protein sor	87.28
KOG3230	224	consensus Vacuolar assembly/sorting protein DID4 [	86.86
COG5491	204	VPS24 Conserved protein implicated in secretion [C	85.45
KOG2911	439	consensus Uncharacterized conserved protein [Funct	83.57
PF10506	67	MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for U	80.47

>KOG2911 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.5e-41  Score=324.27  Aligned_cols=272  Identities=26%  Similarity=0.364  Sum_probs=230.7

Q ss_pred             CCcEeehHhHHHHHHHHH-HHHhhccccc--cccccHhhHHHhhCC-----CchhHHHHHHhhhcCccceeeeecCCcee
Q 021226           13 KDHVILMEVLKDKADEVI-KLLSESHWTS--SCIITMKKFQDKCGG-----QDEASAVLSFLTGRGKALYLSISKNEFTE   84 (315)
Q Consensus        13 ~~~~V~~~~l~e~a~~i~-~~~~~~~~~s--~~v~s~~~F~~~~~~-----~~d~~ilL~yL~~~~~~~~v~v~~~~~~~   84 (315)
                      ....+.++.+.++|..++ ..++++++++  ++|||+.+|+.+|++     .++++++|+||   ...++|++.+.++++
T Consensus       137 ~e~l~~i~~l~eka~~~~~~ll~~~~~~~~t~~Vvt~nef~tlc~~~~~~~~~t~~l~l~~l---~~~k~i~vg~~~g~k  213 (439)
T KOG2911|consen  137 EERLPLIKLLKEKALDVYAELLHEEVLSECTGAVVTLNEFQTLCSNLGKPDEETKDLVLCWL---AYQKHIIVGESIGIK  213 (439)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHhhhhhhccCceeeeHHHHHHHhccCCCCcHHHHHHHHHHH---HhhhheeeehhcceE
Confidence            345777788888888887 7788888888  999999999999997     24688999999   677888988888889


Q ss_pred             eEEeeCC-CCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 021226           85 GVKVSLS-PAAVSSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCT  163 (315)
Q Consensus        85 ~IKf~~~-~~~~~~ITe~D~~I~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~  163 (315)
                      .++|+.. ...+.+||+.|.+|++|+.++.+|.+|++.|+++|++++..++++++.|.|+.|++|||+||++||.++++.
T Consensus       214 ~~~f~~i~~~~~~~it~~D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~  293 (439)
T KOG2911|consen  214 FLKFSQIPSQDASIITEIDGSVADLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKV  293 (439)
T ss_pred             EEeeccCCcccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHH
Confidence            9999744 445778999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHHHHHHHHHHHhCCC-CC--CCCHH
Q 021226          164 SLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKKN---KISVEELQLCLEELEESIDLQKQAEKVIVPS-YT--GIDDE  237 (315)
Q Consensus       164 ~~l~nLe~~l~~Ie~a~~n~~v~~al~~g~~aLK~~---~i~~e~Ve~~mddi~E~~~~~~EI~~~L~~~-~~--~~De~  237 (315)
                      .+++||++++++|++|++|+.|++||++|+.|||.+   +.+.|+|+++||+++|.++.++||+++|+++ .+  +++|+
T Consensus       294 ~~l~~l~~vl~~Id~s~~nkvvl~AyksGs~alK~il~~~~s~ekVed~Ldev~et~d~~~EV~~~la~~~~~~~d~~de  373 (439)
T KOG2911|consen  294 SSLNNLETVLSQIDNSQTNKVVLQAYKSGSEALKAILAQGGSTEKVEDVLDEVNETLDRQEEVEDALASYNVNNIDFEDE  373 (439)
T ss_pred             HHHHHHHHHHHHHHhhcccHHHHHHHHHhHHHHHHHHhccCChhhHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCccchH
Confidence            999999999999999999999999999999999993   5799999999999999999999999999763 33  67899


Q ss_pred             HHHHHHHHHHHHHhhcCC--CCCCCCCCCCCCCC-cccHHHHHHHhhcCccCCCCC
Q 021226          238 DIEEEFKKLEQEVECERP--KPTVSKTGVNEPAA-SESAESLRVAFSTIGLNDGQA  290 (315)
Q Consensus       238 ELe~EL~~Le~E~~~e~~--~p~~~~~~~~~~~~-~~~~~~l~~~L~~L~l~d~~~  290 (315)
                      +||+||+.|+.+....+.  +|..|..   ...+ -.++.++...+..|+..+++.
T Consensus       374 ~lEkEL~~L~~D~~k~e~~~lp~~~~s---r~~~~r~sd~el~~~~~~le~~~~~~  426 (439)
T KOG2911|consen  374 DLEKELEDLEADEKKNEDLVLPLNSVS---RDFLKRLSDLELLTNEDSLEKTEGPL  426 (439)
T ss_pred             HHHHHHHHHHhccccCCccCCCCCCch---HHHhhhcchhhhccccchhhhhcCcc
Confidence            999999999998876433  1222211   1111 134555566666666655554

>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]

Probab=100.00  E-value=8.1e-33  Score=238.26  Aligned_cols=170  Identities=27%  Similarity=0.369  Sum_probs=162.2

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 021226           95 VSSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLS  174 (315)
Q Consensus        95 ~~~ITe~D~~I~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe~~l~  174 (315)
                      .++||+.|++|++||.++++|.++...+++.++..+..||.+++.|+|.+|+.+||+|+++|..|.+.++||.||+++++
T Consensus         8 ~~~Itd~DrAIL~lK~QRdkl~qyqkR~e~~le~Er~~Ar~lird~rKdrAlllLKkKryQE~Ll~qt~~qL~nlEqmvs   87 (209)
T KOG2910|consen    8 KSRITDQDRAILSLKTQRDKLKQYQKRLEKQLEAERQLARDLIRDGRKDRALLLLKKKRYQEELLTQTDNQLINLEQMVS   87 (209)
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHhh
Q 021226          175 LIENAESTKKVSEAIQIGAQAIKKN--KISVEELQLCLEELEESIDLQKQAEKVIVPSYTGIDDEDIEEEFKKLEQEVEC  252 (315)
Q Consensus       175 ~Ie~a~~n~~v~~al~~g~~aLK~~--~i~~e~Ve~~mddi~E~~~~~~EI~~~L~~~~~~~De~ELe~EL~~Le~E~~~  252 (315)
                      .||.+..++.|++.|+.||.+||+.  .+++|+|+++|||.+|++++++||+++|++.++..|+++|.+||++|+.+...
T Consensus        88 diEft~vqk~V~~gLk~GN~~lkkl~~~~~ideV~rimddt~ea~~YQ~Ein~~L~~~ls~~dEddi~~EldaLese~~~  167 (209)
T KOG2910|consen   88 DIEFTQVQKKVMEGLKQGNEALKKLQQEFDIDEVDRIMDDTQEAIEYQDEINAILSGSLSAEDEDDILAELDALESELEV  167 (209)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999994  77999999999999999999999999999988889999999999999998877


Q ss_pred             cCCCCCCCCCCC
Q 021226          253 ERPKPTVSKTGV  264 (315)
Q Consensus       253 e~~~p~~~~~~~  264 (315)
                      +...|.+|.+.+
T Consensus       168 e~e~PevPs~ep  179 (209)
T KOG2910|consen  168 EAELPEVPSTEP  179 (209)
T ss_pred             hhhcCCCCCCCC
Confidence            654588887753

>PTZ00446 vacuolar sorting protein SNF7-like; Provisional

Probab=100.00  E-value=8.3e-32  Score=237.10  Aligned_cols=154  Identities=16%  Similarity=0.213  Sum_probs=147.2

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 021226           99 SSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIEN  178 (315)
Q Consensus        99 Te~D~~I~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe~~l~~Ie~  178 (315)
                      |....+|++|+.++++|+++...|+.+|+.+...|+.+++.|+|.+|+.|||+||++|++|++..++++||++++..|++
T Consensus        23 ~~~~~AIl~Lk~~~~~L~krq~~Le~kIe~e~~~Ak~~~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~~iE~  102 (191)
T PTZ00446         23 DEIYKAILKNREAIDALEKKQVQVEKKIKQLEIEAKQKVEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMINLEN  102 (191)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCCCHHHHHHHHHHHHHHHhh
Q 021226          179 AESTKKVSEAIQIGAQAIKKN--KISVEELQLCLEELEESIDLQKQAEKVIVPS-YTGIDDEDIEEEFKKLEQEVEC  252 (315)
Q Consensus       179 a~~n~~v~~al~~g~~aLK~~--~i~~e~Ve~~mddi~E~~~~~~EI~~~L~~~-~~~~De~ELe~EL~~Le~E~~~  252 (315)
                      |..|..||.||+.|+++||..  +|++|+||++||+|+|+++.++||+++|+.+ .+++||+||++||++|+.+...
T Consensus       103 a~~~~ev~~aLk~g~~aLK~~~k~~~idkVd~lmDei~E~~e~~~EIseaLs~~~~~~~DEdELe~ELe~Le~e~l~  179 (191)
T PTZ00446        103 MHLHKIAVNALSYAANTHKKLNNEINTQKVEKIIDTIQENKDIQEEINQALSFNLLNNVDDDEIDKELDLLKEQTME  179 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999993  9999999999999999999999999999875 4679999999999999986543

>PTZ00464 SNF-7-like protein; Provisional

Probab=99.96  E-value=4.9e-28  Score=217.22  Aligned_cols=158  Identities=16%  Similarity=0.242  Sum_probs=138.4

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 021226           95 VSSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASL---HSGNKTVALRHAKQLKLTKESREKCTSLLNRVEE  171 (315)
Q Consensus        95 ~~~ITe~D~~I~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~---~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe~  171 (315)
                      .+++|..| +|-.|+.....|+++|..|+.++..++..++..-   +.+.|++|+.|||+||++|++++++.++++||++
T Consensus        11 ~p~~t~~d-~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq   89 (211)
T PTZ00464         11 TPKPTLED-ASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQ   89 (211)
T ss_pred             CCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36778555 5589999999999999888888777776554221   1225999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHHHHHHHhCCCC---CCCCHHHHHHHHHHH
Q 021226          172 VLSLIENAESTKKVSEAIQIGAQAIKKN--KISVEELQLCLEELEESIDLQKQAEKVIVPSY---TGIDDEDIEEEFKKL  246 (315)
Q Consensus       172 ~l~~Ie~a~~n~~v~~al~~g~~aLK~~--~i~~e~Ve~~mddi~E~~~~~~EI~~~L~~~~---~~~De~ELe~EL~~L  246 (315)
                      +...|+++++|..||+||+.|+++||..  +|++|+||++||+|+|+++.++||+++|++++   .++||+||++||++|
T Consensus        90 ~~~~ie~a~~~~~vv~amk~g~kaLK~~~k~i~id~Vd~l~Dei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~L  169 (211)
T PTZ00464         90 LQFTTESVKDTKVQVDAMKQAAKTLKKQFKKLNVDKVEDLQDELADLYEDTQEIQEIMGRAYDVPDDIDEDEMLGELDAL  169 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHH
Confidence            9999999999999999999999999993  99999999999999999999999999998865   478999999999999


Q ss_pred             HHHHhhc
Q 021226          247 EQEVECE  253 (315)
Q Consensus       247 e~E~~~e  253 (315)
                      +.|+..+
T Consensus       170 e~e~~~e  176 (211)
T PTZ00464        170 DFDMEKE  176 (211)
T ss_pred             HHHHhcc
Confidence            9987543

>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=5.5e-28  Score=210.37  Aligned_cols=156  Identities=20%  Similarity=0.267  Sum_probs=142.3

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 021226           97 SISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKS-ALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSL  175 (315)
Q Consensus        97 ~ITe~D~~I~~Lk~~~~~L~~qi~~Le~~i~~~~~~-ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe~~l~~  175 (315)
                      +.| -+.+|-.|+.+.+.|.++.+.|+.+|...... |+.|.. ++|..|+.||||||.+|++|.++.+.+.+|+..+..
T Consensus        16 ~~t-~~eaI~kLrEteemL~KKqe~Le~ki~~e~e~~A~k~~t-kNKR~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~a   93 (221)
T KOG1656|consen   16 KPT-PQEAIQKLRETEEMLEKKQEFLEKKIEQEVENNARKYGT-KNKRMALQALKRKKRYEKQLAQIDGTLSTIEFQREA   93 (221)
T ss_pred             CCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            345 56699999999999999999999999888655 665555 489999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHHHHHHHHHHHhCCCC---CCCCHHHHHHHHHHHHHHH
Q 021226          176 IENAESTKKVSEAIQIGAQAIKK--NKISVEELQLCLEELEESIDLQKQAEKVIVPSY---TGIDDEDIEEEFKKLEQEV  250 (315)
Q Consensus       176 Ie~a~~n~~v~~al~~g~~aLK~--~~i~~e~Ve~~mddi~E~~~~~~EI~~~L~~~~---~~~De~ELe~EL~~Le~E~  250 (315)
                      |++|..|.+|+++|..|+++||.  .++++|+|+++||+|.|+.+..+||+++|+.+.   .++|||||.+||++|+++.
T Consensus        94 lEnA~~n~Evl~~m~~~A~AmK~~h~~mDiDkVdd~MdeI~eQqe~a~eIseAiS~Pvg~~a~~DEDEL~~ELdeLeqee  173 (221)
T KOG1656|consen   94 LENANTNTEVLDAMGSAAKAMKAAHKNMDIDKVDDLMDEIAEQQEVAEEISEAISAPVGFGADFDEDELMAELDELEQEE  173 (221)
T ss_pred             HHcccccHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHhCccccccccCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999  399999999999999999999999999998754   3799999999999999877


Q ss_pred             hhcC
Q 021226          251 ECER  254 (315)
Q Consensus       251 ~~e~  254 (315)
                      ...+
T Consensus       174 ld~~  177 (221)
T KOG1656|consen  174 LDKE  177 (221)
T ss_pred             HHHH
Confidence            6553

>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7

Probab=99.92  E-value=3.9e-25  Score=191.48  Aligned_cols=151  Identities=28%  Similarity=0.431  Sum_probs=129.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 021226          104 DVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTK  183 (315)
Q Consensus       104 ~I~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe~~l~~Ie~a~~n~  183 (315)
                      +|++|+.++..|++++..|+.+++.+...|+.+++.|+|..|+.|||++|.+++.++++..++.+|+.++.+|+.+..+.
T Consensus         2 ai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~~~   81 (171)
T PF03357_consen    2 AILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQSNQ   81 (171)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHHHHHHHhCCCC---CCCCHHHHHHHHHHHHHHHhhcC
Q 021226          184 KVSEAIQIGAQAIKKN--KISVEELQLCLEELEESIDLQKQAEKVIVPSY---TGIDDEDIEEEFKKLEQEVECER  254 (315)
Q Consensus       184 ~v~~al~~g~~aLK~~--~i~~e~Ve~~mddi~E~~~~~~EI~~~L~~~~---~~~De~ELe~EL~~Le~E~~~e~  254 (315)
                      .|+.+|+.|+++|+..  ++++++|+++|+++++.++.+++|+++|++.+   .++||+||++||++|+.|...+.
T Consensus        82 ~v~~al~~~~~~Lk~~~~~i~~~~v~~~~d~~~e~~e~~~ei~~~l~~~~~~~~~~dd~ele~eL~~l~~e~~~~~  157 (171)
T PF03357_consen   82 QVVKALKQSSKALKKINKQINLDKVEKLMDDFQEEMEDQDEISEALSDSMDQVDDVDDEELEEELEQLEDEIEEEE  157 (171)
T ss_dssp             HHSSS----SHHHHHHHHSTTSCCHHHHHHHHHHHHHHHTS----------------TTSTTCHHHHHHHCCCTTS
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHhhhh
Confidence            9999999999999994  89999999999999999999999999998865   57889999999999999877654

The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.

>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=4.3e-19  Score=154.07  Aligned_cols=149  Identities=19%  Similarity=0.288  Sum_probs=133.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 021226          102 DYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGN-----KTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLI  176 (315)
Q Consensus       102 D~~I~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~~-----K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe~~l~~I  176 (315)
                      --+|-.+...-+.++.+|..|+.++.+++...+ -.|.|.     |++|++.||+||+||.+.+.+.++-+|+++.-..+
T Consensus        18 ~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~-k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t~   96 (218)
T KOG1655|consen   18 QDAIDSVNKRSDSVEKKISKLDAELCKYKDQIK-KTRPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQANFTA   96 (218)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-hcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            347788888888888888888888888886554 235553     78999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CCCHHHHHHHHHHHHHHHh
Q 021226          177 ENAESTKKVSEAIQIGAQAIKK--NKISVEELQLCLEELEESIDLQKQAEKVIVPSYT--GIDDEDIEEEFKKLEQEVE  251 (315)
Q Consensus       177 e~a~~n~~v~~al~~g~~aLK~--~~i~~e~Ve~~mddi~E~~~~~~EI~~~L~~~~~--~~De~ELe~EL~~Le~E~~  251 (315)
                      +.-+++...|.||+.|++.||.  ..|++|+|+++-|+|.+.|+..+||+++|+.+++  ++|+++|++||++|..|..
T Consensus        97 e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQE~Lgr~y~~peide~dL~aELdaL~~E~d  175 (218)
T KOG1655|consen   97 ESLKDTQATVAAMKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQEVLGRNYNTPDIDEADLDAELDALGQELD  175 (218)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHHHHHhHhh
Confidence            9999999999999999999999  4999999999999999999999999999998765  6899999999999966543

>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.35  E-value=0.00016  Score=63.74  Aligned_cols=136  Identities=15%  Similarity=0.228  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCHH----HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021226          114 KLQLQLDIIDRHYEMSRKSALASLHSGNKT----VALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAI  189 (315)
Q Consensus       114 ~L~~qi~~Le~~i~~~~~~ak~~~~~~~K~----~Al~~Lr~KK~~ek~L~~~~~~l~nLe~~l~~Ie~a~~n~~v~~al  189 (315)
                      .|......|+.+-.++-..+|..-++|+-.    .|+.+.|.|    .++.+......||+.+-.+|..-.++-.+..+|
T Consensus        27 eleRer~~le~qeKklvaeIKk~AK~gq~~A~KimAkdLvRtR----~~i~kf~~~kaqiqaVSl~iQtlkss~sma~aM  102 (224)
T KOG3230|consen   27 ELERERQKLELQEKKLVAEIKKTAKQGQMDAVKIMAKDLVRTR----RYIKKFQNMKAQIQAVSLRIQTLKSSTSMAQAM  102 (224)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            344444444443333344444455777755    455555555    456677888889999999999999999999999


Q ss_pred             HHHHHHHHh-c-CCChHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-CCCHHHHHHHHHHHHHHHhhc
Q 021226          190 QIGAQAIKK-N-KISVEELQLCLEELEESIDLQKQAEKVIVPSYT-GIDDEDIEEEFKKLEQEVECE  253 (315)
Q Consensus       190 ~~g~~aLK~-~-~i~~e~Ve~~mddi~E~~~~~~EI~~~L~~~~~-~~De~ELe~EL~~Le~E~~~e  253 (315)
                      +-.+++|-. + .+++-.+.++|-+++-+-+..+--.++++...+ ..+++|=|+|-+.|...+.+|
T Consensus       103 kGaTkam~~MNrqmnlpq~qkIm~eFekQse~Mdm~~Emm~daIDdal~~~edEEEtd~lvnqVLDE  169 (224)
T KOG3230|consen  103 KGATKAMAGMNRQMNLPQIQKIMQEFEKQSEIMDMKEEMMDDAIDDALGDDEDEEETDDLVNQVLDE  169 (224)
T ss_pred             HHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHH
Confidence            999999999 4 999999999999998888777766666655333 223444456666666555544

>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.25  E-value=0.0014  Score=56.84  Aligned_cols=181  Identities=17%  Similarity=0.274  Sum_probs=120.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH----HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 021226          100 SLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRH----AKQLKLTKESREKCTSLLNRVEEVLSL  175 (315)
Q Consensus       100 e~D~~I~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~~K~~Al~~----Lr~KK~~ek~L~~~~~~l~nLe~~l~~  175 (315)
                      .....+++||.+-..|+++-...+++-...+.+.+.++.+|+.+.|+.|    +|+|...-..|    ..-.++..+..+
T Consensus         6 ~le~~lf~LkF~sk~L~r~a~kceKeEK~Ek~K~kkAi~kgN~dvArIyAeNAIRkkne~~n~L----rlssRvDAVaaR   81 (203)
T KOG3232|consen    6 KLENHLFDLKFTSKQLQRQAKKCEKEEKAEKAKLKKAIQKGNMDVARIYAENAIRKKNEAVNYL----RLSSRVDAVAAR   81 (203)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence            3567889999999999988888777766667788999999998887755    55554433332    234567788889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHHHHHHHH----HHHhCCCCC-CCCHHHHHHHHHHHHH
Q 021226          176 IENAESTKKVSEAIQIGAQAIKK--NKISVEELQLCLEELEESIDLQKQA----EKVIVPSYT-GIDDEDIEEEFKKLEQ  248 (315)
Q Consensus       176 Ie~a~~n~~v~~al~~g~~aLK~--~~i~~e~Ve~~mddi~E~~~~~~EI----~~~L~~~~~-~~De~ELe~EL~~Le~  248 (315)
                      ++.|.+-..|-..|..-.+.|-+  ..+++++|-.+||.++-+-++.+==    .++++++.. ..+.++++.=+.+.-.
T Consensus        82 vqTavtmr~Vt~sM~gVvK~md~alktmNLekis~~MDkFE~qFedldvqt~~me~~m~~st~l~tpq~~Vd~Lmq~vAD  161 (203)
T KOG3232|consen   82 VQTAVTMRKVTKSMAGVVKSMDSALKTMNLEKISQLMDKFEKQFEDLDVQTEVMEKAMSGSTALSTPQGDVDSLMQQVAD  161 (203)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhHHHHHHHhccCcccccCChhHHHHHHHHHHH
Confidence            99999999999999888888887  3899999999999998887766543    444444221 3445555433333322


Q ss_pred             ----HHhhcCCCCCCCCCCCCCCCCcccHHHHHHHhhcCc
Q 021226          249 ----EVECERPKPTVSKTGVNEPAASESAESLRVAFSTIG  284 (315)
Q Consensus       249 ----E~~~e~~~p~~~~~~~~~~~~~~~~~~l~~~L~~L~  284 (315)
                          |...+-+++-+|..+.+.+..+...++|..+|..|+
T Consensus       162 eaGlElnq~lp~~~~~a~~~~t~~~~~e~d~L~qRLaaLR  201 (203)
T KOG3232|consen  162 EAGLELNQELPQNVVPAISVKTSAVVDEEDDLTQRLAALR  201 (203)
T ss_pred             HhchhhhhcCCCCCCCCcCCCCccccchhhHHHHHHHHHh
Confidence                222222222223323222222333388999988774

>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.17  E-value=0.00045  Score=61.40  Aligned_cols=151  Identities=18%  Similarity=0.200  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 021226          104 DVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTK  183 (315)
Q Consensus       104 ~I~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe~~l~~Ie~a~~n~  183 (315)
                      =-..|++....|.+|+-.|+..-.+.....|++.++|++..++.+-|.--..-+...+++..--.|..+..++..+-...
T Consensus        19 wq~kiRke~r~ldrqir~iqree~kv~~~iK~aAKknD~~t~~iLAKEiv~srk~v~Rly~sKAqlnSv~M~l~eqla~~   98 (227)
T KOG3229|consen   19 WQSKIRKEGRQLDRQIRDIQREEEKVQKSIKQAAKKNDKDTCRILAKEIVQSRKAVKRLYESKAQLNSVSMQLKEQLATL   98 (227)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHH
Confidence            34567788888888988888888888888888999999998888887777777888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHh-cCC-ChHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-----CCCHHHHHHHHHHHHHHHhhcC
Q 021226          184 KVSEAIQIGAQAIKK-NKI-SVEELQLCLEELEESIDLQKQAEKVIVPSYT-----GIDDEDIEEEFKKLEQEVECER  254 (315)
Q Consensus       184 ~v~~al~~g~~aLK~-~~i-~~e~Ve~~mddi~E~~~~~~EI~~~L~~~~~-----~~De~ELe~EL~~Le~E~~~e~  254 (315)
                      -+...|+.|+.+||. +.+ -+=.+-.+|-++.-.|-+.-=|.+++...+.     ...+++.++|.+....+...+.
T Consensus        99 r~~G~lqkStevMk~v~sLvk~Pel~~TMrelSkEmmKaGIIEEmvdet~esv~d~eemeEe~deEVdkIL~~it~~~  176 (227)
T KOG3229|consen   99 RVAGSLQKSTEVMKAVNSLVKLPELAATMRELSKEMMKAGIIEEMVDETMESVEDSEEMEEEADEEVDKILTEITGEK  176 (227)
T ss_pred             HHHhhHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHhccc
Confidence            999999999999999 444 7888999999999999999888888854222     1246677777777777776654

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=97.96  E-value=0.001  Score=60.19  Aligned_cols=150  Identities=21%  Similarity=0.255  Sum_probs=114.5

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----
Q 021226           97 SISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEE-----  171 (315)
Q Consensus        97 ~ITe~D~~I~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe~-----  171 (315)
                      .+.....++..+......|+++++.++..+......|..++..|+-+.|+.+|.+|+.++..+.....++..+..     
T Consensus        38 ~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l  117 (221)
T PF04012_consen   38 QLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKL  117 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456788889999999999999999999999999999999999999999999999999999998888777665544     


Q ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCChHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHH
Q 021226          172 ------VLSLIENAESTKKVSEAIQIGAQAIKK-----NKISVEELQLCLEELEESIDLQKQAEKVIVPSYTGIDDEDIE  240 (315)
Q Consensus       172 ------~l~~Ie~a~~n~~v~~al~~g~~aLK~-----~~i~~e~Ve~~mddi~E~~~~~~EI~~~L~~~~~~~De~ELe  240 (315)
                            +-.+|...+.....+.+-....++-+.     .+++++.....++.|++.++..+--.++..... + +...++
T Consensus       118 ~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~~~a~~~~er~e~ki~~~ea~a~a~~el~-~-~~~~~e  195 (221)
T PF04012_consen  118 KEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASFSVSSAMDSFERMEEKIEEMEARAEASAELA-D-SDQDLE  195 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHHHHHHHHHHHHhc-c-CcccHH
Confidence                  445666667777777776666666665     166777777777777777666665555554411 1 222378


Q ss_pred             HHHHHHHH
Q 021226          241 EEFKKLEQ  248 (315)
Q Consensus       241 ~EL~~Le~  248 (315)
                      .+|+++..
T Consensus       196 ~~l~~~~~  203 (221)
T PF04012_consen  196 AELEELER  203 (221)
T ss_pred             HHHHHhcC
Confidence            88877754

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PRK10698 phage shock protein PspA; Provisional

Probab=97.75  E-value=0.0097  Score=54.30  Aligned_cols=130  Identities=9%  Similarity=0.061  Sum_probs=96.7

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH------
Q 021226           98 ISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEE------  171 (315)
Q Consensus        98 ITe~D~~I~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe~------  171 (315)
                      +.+.-.++..+......+++++..++..+......|..++..|+-+.|+.+|.+|+.++..+..+..++.....      
T Consensus        40 l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~  119 (222)
T PRK10698         40 LVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMK  119 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456788888889999999999999999999999999999999999999999999999987777766555444      


Q ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 021226          172 -----VLSLIENAESTKKVSEAIQIGAQAIKKN-----KISVEELQLCLEELEESIDLQKQAEKVI  227 (315)
Q Consensus       172 -----~l~~Ie~a~~n~~v~~al~~g~~aLK~~-----~i~~e~Ve~~mddi~E~~~~~~EI~~~L  227 (315)
                           +-.+|..++.-..++-+=..+..+-+..     +++.+.-=.-++.+.+-++..+-=.+++
T Consensus       120 ~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki~~~Ea~aea~  185 (222)
T PRK10698        120 KEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRIDQMEAEAESH  185 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhHh
Confidence                 5567788888888888777777777762     5554433334444444444444333333

>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.68  E-value=0.011  Score=50.95  Aligned_cols=177  Identities=11%  Similarity=0.149  Sum_probs=110.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 021226          108 LIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVSE  187 (315)
Q Consensus       108 Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe~~l~~Ie~a~~n~~v~~  187 (315)
                      |+.+...|+.....++++-.++....+.....|+++.++.+-|+--.+-++-.+.++.-..+..+-.+-..-.++..+-.
T Consensus        20 LRkt~RdierdRr~me~~Ek~LElEIkk~Aa~GnndAcr~LAKQLV~lRkQKtrt~a~s~ki~s~~~QnK~M~s~~km~~   99 (208)
T KOG3231|consen   20 LRKTQRDIERDRRAMEKQEKQLELEIKKMAAIGNNDACRVLAKQLVHLRKQKTRTFAVSSKITSMSTQNKVMNSQMKMAG   99 (208)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            44444444444444444444444445555578898888887777777777888888888888888777777888889999


Q ss_pred             HHHHHHHHHHh-c-CCChHHHHHHHHHHHHHHHHHH---H-HHHHhCCCCCC-CCHHHHHHHHHHHHHHHhhcCC--CCC
Q 021226          188 AIQIGAQAIKK-N-KISVEELQLCLEELEESIDLQK---Q-AEKVIVPSYTG-IDDEDIEEEFKKLEQEVECERP--KPT  258 (315)
Q Consensus       188 al~~g~~aLK~-~-~i~~e~Ve~~mddi~E~~~~~~---E-I~~~L~~~~~~-~De~ELe~EL~~Le~E~~~e~~--~p~  258 (315)
                      ||-+..++|+. + .+.++++-.+|.+++-...+.+   | |++.|-.-++. -|++|-.+=.++...|...+..  ...
T Consensus       100 AMgTTaKTM~amNk~M~pek~~~tmr~FQ~anmKMemTeEMiNDTLDdild~sgDeeEs~aiVNqVLDEIGIEisgKma~  179 (208)
T KOG3231|consen  100 AMGTTAKTMQAMNKKMDPEKTLQTMRNFQKANMKMEMTEEMINDTLDDILDGSGDEEESQAIVNQVLDEIGIEISGKMAK  179 (208)
T ss_pred             HhchHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHhcCCCcHHHHHHHHHHHHHHhhhhhcchhcc
Confidence            99999999998 4 8899999999999886654443   3 33333221221 2444444444444455444432  133


Q ss_pred             CCCC-CCCCCC-CcccHHHHHHHhhcCc
Q 021226          259 VSKT-GVNEPA-ASESAESLRVAFSTIG  284 (315)
Q Consensus       259 ~~~~-~~~~~~-~~~~~~~l~~~L~~L~  284 (315)
                      +|.. +.+..+ ..-+..++...|..|.
T Consensus       180 ~P~a~s~~~~st~kat~~Die~QLa~Lr  207 (208)
T KOG3231|consen  180 APSARSLPSASTSKATISDIERQLAALR  207 (208)
T ss_pred             CCccCCCCccccCCCcHHHHHHHHHHhc
Confidence            4432 112221 1445566888777764

>TIGR02977 phageshock_pspA phage shock protein A

Probab=97.48  E-value=0.041  Score=49.97  Aligned_cols=147  Identities=16%  Similarity=0.155  Sum_probs=99.0

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----
Q 021226           97 SISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEE-----  171 (315)
Q Consensus        97 ~ITe~D~~I~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe~-----  171 (315)
                      .|.+.-.++..+......+++++..+...+......|+.++..|+-+.|+.+|.+|+.++..+..+..++..+..     
T Consensus        39 ~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l  118 (219)
T TIGR02977        39 TLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAAVEETLAKL  118 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677788888888899999999999999999999999999999999999999999999998777776665554     


Q ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCChHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHH
Q 021226          172 ------VLSLIENAESTKKVSEAIQIGAQAIKK-----NKISVEELQLCLEELEESIDLQKQAEKVIVPSYTGIDDEDIE  240 (315)
Q Consensus       172 ------~l~~Ie~a~~n~~v~~al~~g~~aLK~-----~~i~~e~Ve~~mddi~E~~~~~~EI~~~L~~~~~~~De~ELe  240 (315)
                            +-.+|+.++.....+-+=..+..+-+.     .+++.+.--..++.|.+-.+..+--.++.+. .   +.+.|+
T Consensus       119 ~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~ki~~~ea~aea~~~-~---~~~~l~  194 (219)
T TIGR02977       119 QEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERRVDELEAQAESYDL-G---RKPSLE  194 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHhhc-c---CCCCHH
Confidence                  444555666666655444444444433     1445554444444454443333322222221 1   123467


Q ss_pred             HHHHHHH
Q 021226          241 EEFKKLE  247 (315)
Q Consensus       241 ~EL~~Le  247 (315)
                      .+|..|+
T Consensus       195 ~~l~~l~  201 (219)
T TIGR02977       195 DEFAELE  201 (219)
T ss_pred             HHHHHhc
Confidence            7776664

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=97.47  E-value=0.025  Score=51.73  Aligned_cols=148  Identities=18%  Similarity=0.194  Sum_probs=108.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH------
Q 021226          100 SLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVL------  173 (315)
Q Consensus       100 e~D~~I~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe~~l------  173 (315)
                      +.-.++.++......++.++..+..+.++....|+.++..|+-..|...|-++..+++.+.....++.++.+..      
T Consensus        42 ~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~  121 (225)
T COG1842          42 KARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQ  121 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456777777778888888999999999999999999999999999999999999999988887776655543      


Q ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHh----c-CCChHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Q 021226          174 -----SLIENAESTKKVSEAIQIGAQAIKK----N-KISVEELQLCLEELEESIDLQKQAEKVIVPSYTGIDDEDIEEEF  243 (315)
Q Consensus       174 -----~~Ie~a~~n~~v~~al~~g~~aLK~----~-~i~~e~Ve~~mddi~E~~~~~~EI~~~L~~~~~~~De~ELe~EL  243 (315)
                           .+|......+..+.+=....++-..    . +++.+..-..++.|++-++..+.=.++.+. +.....+++++||
T Consensus       122 ~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~~sa~~~fer~e~kiee~ea~a~~~~e-l~~~~~~dl~~e~  200 (225)
T COG1842         122 LAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSSSSAMAAFERMEEKIEEREARAEAAAE-LAEGSGDDLDKEF  200 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHhHH-hhccCcccHHHHH
Confidence                 4566667777777776666666665    2 555556666666666666666555555543 1123455677787


Q ss_pred             HHHHH
Q 021226          244 KKLEQ  248 (315)
Q Consensus       244 ~~Le~  248 (315)
                      +++..
T Consensus       201 a~~~~  205 (225)
T COG1842         201 AQAGA  205 (225)
T ss_pred             HHhcc
Confidence            77654

>PTZ00464 SNF-7-like protein; Provisional

Probab=95.16  E-value=2  Score=39.02  Aligned_cols=92  Identities=8%  Similarity=0.052  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhcCCHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 021226          106 LHLIWTVEKLQLQLDIIDRHYEMSRK---SALASLHSGNKTVALRHAKQL-KLTKESREKCTSLLNRVEEVLSLIENAES  181 (315)
Q Consensus       106 ~~Lk~~~~~L~~qi~~Le~~i~~~~~---~ak~~~~~~~K~~Al~~Lr~K-K~~ek~L~~~~~~l~nLe~~l~~Ie~a~~  181 (315)
                      ..++.++..|..++..|+.+|..+..   .|+.+++.++. .+..-.|+| +.+-+.-.....++.++...+.+++...+
T Consensus        14 ~t~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~-~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~   92 (211)
T PTZ00464         14 PTLEDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRG-MTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQF   92 (211)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46889999999999999999988774   57777776654 444444443 22334444456677888888888888777


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 021226          182 TKKVSEAIQIGAQAIKK  198 (315)
Q Consensus       182 n~~v~~al~~g~~aLK~  198 (315)
                      ..+-...=..-..+|+.
T Consensus        93 ~ie~a~~~~~vv~amk~  109 (211)
T PTZ00464         93 TTESVKDTKVQVDAMKQ  109 (211)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            76655544444444443

>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7

Probab=90.74  E-value=0.85  Score=38.90  Aligned_cols=81  Identities=14%  Similarity=0.137  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 021226          111 TVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLK-----LTKESREKCTSLLNRVEEVLSLIENAESTKKV  185 (315)
Q Consensus       111 ~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK-----~~ek~L~~~~~~l~nLe~~l~~Ie~a~~n~~v  185 (315)
                      ++..|...+..|++++..+....+.     -+..|+.++++.+     .+-+.+-+...++.++...+.+++......+.
T Consensus         2 ai~~Lk~~~~~L~~~~~~le~~i~~-----~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~   76 (171)
T PF03357_consen    2 AILKLKKTIRRLEKQIKRLEKKIKK-----LEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIET   76 (171)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH-----CHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556666666777776666665442     2445555554432     23333344444445555555555554444444


Q ss_pred             HHHHHHHHHHH
Q 021226          186 SEAIQIGAQAI  196 (315)
Q Consensus       186 ~~al~~g~~aL  196 (315)
                      ......-..+|
T Consensus        77 a~~~~~v~~al   87 (171)
T PF03357_consen   77 AQSNQQVVKAL   87 (171)
T ss_dssp             HHHHHHHSSS-
T ss_pred             HHHHHHHHHHH
Confidence            44333333333

The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.

>PTZ00446 vacuolar sorting protein SNF7-like; Provisional

Probab=89.33  E-value=16  Score=32.74  Aligned_cols=74  Identities=9%  Similarity=0.034  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HHHHHHHH---HhHHHHHHHHHHHHHHHHH
Q 021226          107 HLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKL--TKESREKC---TSLLNRVEEVLSLIENAES  181 (315)
Q Consensus       107 ~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK~--~ek~L~~~---~~~l~nLe~~l~~Ie~a~~  181 (315)
                      ..+.++.+|..+++.|+++...+...+..     ....|+.++++.+.  +-..|.+.   ..++.++...+..+++...
T Consensus        24 ~~~~AIl~Lk~~~~~L~krq~~Le~kIe~-----e~~~Ak~~~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~   98 (191)
T PTZ00446         24 EIYKAILKNREAIDALEKKQVQVEKKIKQ-----LEIEAKQKVEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMI   98 (191)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            37889999999999999999888876542     23457777766553  33334333   4455555555555555554


Q ss_pred             HHHH
Q 021226          182 TKKV  185 (315)
Q Consensus       182 n~~v  185 (315)
                      +.+-
T Consensus        99 ~iE~  102 (191)
T PTZ00446         99 NLEN  102 (191)
T ss_pred             HHHH
Confidence            4443

>smart00685 DM14 Repeats in fly CG4713, worm Y37H9A

Probab=88.50  E-value=2.2  Score=30.91  Aligned_cols=44  Identities=18%  Similarity=0.300  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 021226          120 DIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCT  163 (315)
Q Consensus       120 ~~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~  163 (315)
                      +.|+.+...++..|.++-++|+-..|+.|+|.=|.++..+....
T Consensus         2 ~~L~~R~~~yk~Aa~~AK~~gd~~kAr~~~R~~K~~~~~I~~~~   45 (59)
T smart00685        2 ALLQQRQEQYKQAALQAKRAGDEEKARRHLRIAKQFDDAIKAAR   45 (59)
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhHHHHHHHHH
Confidence            56888888999888888899999999999999999998887653

3 and human FLJ20241.

>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.28  E-value=20  Score=32.17  Aligned_cols=92  Identities=13%  Similarity=0.076  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 021226          107 HLIWTVEKLQLQLDIIDRHYEMSRKSALASL---HSGNKTVALRHAKQLKLT-KESREKCTSLLNRVEEVLSLIENAEST  182 (315)
Q Consensus       107 ~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~---~~~~K~~Al~~Lr~KK~~-ek~L~~~~~~l~nLe~~l~~Ie~a~~n  182 (315)
                      .|..++..+.++-+.++.+|.++......|-   ++-+-.-|+..||+|-+- -++-.-..++..+|.+.-...++|...
T Consensus        16 sL~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t   95 (218)
T KOG1655|consen   16 SLQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQANFT   95 (218)
T ss_pred             hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence            8899999999999999999999997554443   333333489999988763 344444566788888888888888877


Q ss_pred             HHHHHHHHHHHHHHHh
Q 021226          183 KKVSEAIQIGAQAIKK  198 (315)
Q Consensus       183 ~~v~~al~~g~~aLK~  198 (315)
                      .+-++--.+...|||.
T Consensus        96 ~e~LKdtq~Tv~AmK~  111 (218)
T KOG1655|consen   96 AESLKDTQATVAAMKD  111 (218)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            7777666666677775

>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.86  E-value=23  Score=31.81  Aligned_cols=170  Identities=16%  Similarity=0.192  Sum_probs=105.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 021226          101 LDYDVLHLIWTVEKLQLQLDIIDRHYEM---------SRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEE  171 (315)
Q Consensus       101 ~D~~I~~Lk~~~~~L~~qi~~Le~~i~~---------~~~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe~  171 (315)
                      .++++-.|...+..|+.|-+.|=.+|.+         .+-.||.+++-      ++|.   +-+.....++.+--..+++
T Consensus        21 l~~a~ReleRer~~le~qeKklvaeIKk~AK~gq~~A~KimAkdLvRt------R~~i---~kf~~~kaqiqaVSl~iQt   91 (224)
T KOG3230|consen   21 LNKATRELERERQKLELQEKKLVAEIKKTAKQGQMDAVKIMAKDLVRT------RRYI---KKFQNMKAQIQAVSLRIQT   91 (224)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH------HHHH---HHHHHHHHHHHHHHHHHHH
Confidence            3445555666666666666655555533         23345555442      3333   2334555666777788889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh--c-CC--ChHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Q 021226          172 VLSLIENAESTKKVSEAIQIGAQAIKK--N-KI--SVEELQLCLEELEESIDLQKQAEKVIVPSYTGIDDEDIEEEFKKL  246 (315)
Q Consensus       172 ~l~~Ie~a~~n~~v~~al~~g~~aLK~--~-~i--~~e~Ve~~mddi~E~~~~~~EI~~~L~~~~~~~De~ELe~EL~~L  246 (315)
                      +.+.-..++.=+-+-.||..=|+-|.-  + .|  ..++--++||--.|.|.  +-|+++|+.   +.||+|-++=-.+-
T Consensus        92 lkss~sma~aMkGaTkam~~MNrqmnlpq~qkIm~eFekQse~Mdm~~Emm~--daIDdal~~---~edEEEtd~lvnqV  166 (224)
T KOG3230|consen   92 LKSSTSMAQAMKGATKAMAGMNRQMNLPQIQKIMQEFEKQSEIMDMKEEMMD--DAIDDALGD---DEDEEETDDLVNQV  166 (224)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhcc---cchhHHHHHHHHHH
Confidence            999999999999999999999998875  2 33  78888999999988886  458999964   34555544444555


Q ss_pred             HHHHhhcC-----CCCC----CCCC---CCC-----CCCC-cccHHHHHHHhhcCc
Q 021226          247 EQEVECER-----PKPT----VSKT---GVN-----EPAA-SESAESLRVAFSTIG  284 (315)
Q Consensus       247 e~E~~~e~-----~~p~----~~~~---~~~-----~~~~-~~~~~~l~~~L~~L~  284 (315)
                      ..|....-     ..|+    +|..   ...     ...+ ...+++|.++|.+|.
T Consensus       167 LDEiGvdl~~qL~~~P~~~~~~~~a~~ig~~~a~~~gs~~~~~~dddLqaRL~~Lr  222 (224)
T KOG3230|consen  167 LDEIGVDLASQLSSLPSAAGSLPIAKTIGGKKAEAAGSEFHSDADDDLQARLDNLR  222 (224)
T ss_pred             HHHHcccHHHHhccCcccccccchhhccCCccccccccccCCCchhHHHHHHHHHh
Confidence            44443221     1243    1111   111     1112 455788999998875

>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]

Probab=85.45  E-value=28  Score=31.47  Aligned_cols=40  Identities=13%  Similarity=0.237  Sum_probs=20.7

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021226          158 SREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIK  197 (315)
Q Consensus       158 ~L~~~~~~l~nLe~~l~~Ie~a~~n~~v~~al~~g~~aLK  197 (315)
                      ...++......|+++-..+........|..-|..++..+.
T Consensus        50 ~~srL~~~~sRLqs~~~~~~e~~~m~~v~~~~~~a~~~mn   89 (204)
T COG5491          50 ARSRLDASISRLQSLDTMLFEKVVMRQVSGDMAKAAMYMN   89 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            3444445555555555555555555555555555555555

>KOG2911 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.57  E-value=51  Score=33.01  Aligned_cols=83  Identities=17%  Similarity=0.082  Sum_probs=53.2

Q ss_pred             CCCChhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH--HHHHHHHHHHH---HhHHHHH
Q 021226           96 SSISSLDYD-VLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQ--LKLTKESREKC---TSLLNRV  169 (315)
Q Consensus        96 ~~ITe~D~~-I~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~--KK~~ek~L~~~---~~~l~nL  169 (315)
                      ..|+..|.+ |-.+-..+..|.+-+..|.++|+.+.+.+.     ..++.|+.++|.  |+++-..|-++   ...+...
T Consensus       218 ~~i~~~~~~~it~~D~~V~~L~~~~~~L~kqie~L~qeie-----~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~  292 (439)
T KOG2911|consen  218 SQIPSQDASIITEIDGSVADLIQARAKLAKQIEFLEQEIE-----KSKEKLRQALKEGKKQIAITYLRARKLLEKDLERK  292 (439)
T ss_pred             ccCCcccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHH
Confidence            345554544 778899999999999999999999999876     345666677764  34444444333   3344444


Q ss_pred             HHHHHHHHHHHHHH
Q 021226          170 EEVLSLIENAESTK  183 (315)
Q Consensus       170 e~~l~~Ie~a~~n~  183 (315)
                      ...+.+++.--++.
T Consensus       293 ~~~l~~l~~vl~~I  306 (439)
T KOG2911|consen  293 VSSLNNLETVLSQI  306 (439)
T ss_pred             HHHHHHHHHHHHHH
Confidence            44455555444443

>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer)

Probab=80.47  E-value=18  Score=26.81  Aligned_cols=64  Identities=16%  Similarity=0.136  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 021226          107 HLIWTVEKLQLQLDIIDRHYEMSRK-SALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVE  170 (315)
Q Consensus       107 ~Lk~~~~~L~~qi~~Le~~i~~~~~-~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe  170 (315)
                      .|+..++.|..+.+.|..-.+.++. .+.-.+.-|+.+.+...||.++.+.....+.++++..|.
T Consensus         2 rL~~~ie~L~~~n~~L~~~le~~k~~se~Ls~~lgk~es~~~alrlal~ys~r~~e~~~~llal~   66 (67)
T PF10506_consen    2 RLKRRIEELKSQNEMLSSTLEERKQQSEELSMDLGKYESNATALRLALKYSERCKEAYEVLLALV   66 (67)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3677788888888888888877775 444556788899999999999999999999888887653

MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	315
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
3frt_A	218	Charged multivesicular BODY protein 3; ESCRT, ESCR	4e-05
2gd5_A	179	Charged multivesicular BODY protein 3; CHMP3, ESCR	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 2e-06
 Identities = 26/196 (13%), Positives = 62/196 (31%), Gaps = 58/196 (29%)

Query: 7   TPEILLKDHVILMEV--LKDKADE----VIKLLSES---------HWTSSCIITMKKFQD 51
              +LLK   +      L  +        + +++ES         +W       +    +
Sbjct: 303 VKSLLLK--YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360

Query: 52  KCGGQDEASAVLSFLT-GRGKALY--LSISKNEFTEGVKVSLSPAAVSSISSLDYDVLHL 108
                      L+ L     + ++  LS+    F     +   P            +L L
Sbjct: 361 SS---------LNVLEPAEYRKMFDRLSV----FPPSAHI---PT----------ILLSL 394

Query: 109 IWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNR 168
           IW        + +++   ++ + S L        T+++  +  L+L  +   +    L+R
Sbjct: 395 IWFDVIKSDVMVVVN---KLHKYS-LVEKQPKESTISI-PSIYLELKVKLENEYA--LHR 447

Query: 169 VEEVLSLIENAESTKK 184
                S++++    K 
Sbjct: 448 -----SIVDHYNIPKT 458

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 1e-05
 Identities = 32/254 (12%), Positives = 75/254 (29%), Gaps = 63/254 (24%)

Query: 16  VILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQDEASAVLSFLTGRGKALYL 75
            + ++V         K+  +  W     + +          +    VL  L    + L  
Sbjct: 165 WVALDVCLSY-KVQCKMDFKIFW-----LNL-------KNCNSPETVLEML----QKLLY 207

Query: 76  SISKNEFTEGVKVSLSPAAVSSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALA 135
            I  N +T     S +      I S+    L  +   +  +  L ++     +    A  
Sbjct: 208 QIDPN-WTSRSDHSSNIK--LRIHSIQ-AELRRLLKSKPYENCLLVLL---NVQNAKAWN 260

Query: 136 SLHSGNKTVALRHAKQLKLTKESREKC--TSLLNRVEEVLSLIENAES-TKKVSEAIQIG 192
           + +   K +         LT  +R K     L       +SL  ++ + T    E   + 
Sbjct: 261 AFNLSCKIL---------LT--TRFKQVTDFLSAATTTHISLDHHSMTLTP--DEVKSLL 307

Query: 193 AQAIKKNKISVEEL--QLCL----------EELEESID--------LQKQAEKVIVPSYT 232
            + +       ++L  ++            E + + +            +   +I  S  
Sbjct: 308 LKYLD---CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364

Query: 233 GIDDEDIEEEFKKL 246
            ++  +  + F +L
Sbjct: 365 VLEPAEYRKMFDRL 378

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 6e-05
 Identities = 40/268 (14%), Positives = 71/268 (26%), Gaps = 81/268 (30%)

Query: 10  ILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKC----GGQDEASAVLSF 65
           +  K +   + VL      V          +        F   C      +     V  F
Sbjct: 238 LKSKPYENCLLVL----LNV--------QNAKAW---NAFNLSCKILLTTRF--KQVTDF 280

Query: 66  LTG-RGKALYLSISKNEFTE-----------GVKVSLSPAAVSSISSLDYDVLHLIWTVE 113
           L+      + L       T              +    P  V + +      L +I   E
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR---RLSIIA--E 335

Query: 114 KLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVE--- 170
            ++  L   D                       +H    KLT    E   ++L   E   
Sbjct: 336 SIRDGLATWDN---------------------WKHVNCDKLTT-IIESSLNVLEPAEYRK 373

Query: 171 --EVLSLIENAESTKKVSEAIQIGAQAIKK--NKISVEELQLCLEELEESIDLQKQAEKV 226
             + LS+     S         I    +      +   ++ + + +L +   ++KQ +  
Sbjct: 374 MFDRLSVFP--PSAH-------IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK-- 422

Query: 227 IVPSYTGIDDEDIEEEFKKLEQEVECER 254
              S   I    +E +  KLE E    R
Sbjct: 423 --ESTISIPSIYLELK-VKLENEYALHR 447

>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens} Length = 218

 Score = 43.2 bits (101), Expect = 4e-05
 Identities = 31/172 (18%), Positives = 72/172 (41%), Gaps = 7/172 (4%)

Query: 111 TVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVE 170
            +  +  Q+  I R  E  ++S   +   G K V +  AK++  ++++  K  +    + 
Sbjct: 22  EMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMN 81

Query: 171 EVLSLIENAESTKKVSEAIQIGAQAIKK--NKISVEELQLCLEELEESIDLQKQAEKVIV 228
            VL  ++N  +  +V+ ++Q   + +K   + + + E+Q  + EL + +      E+++ 
Sbjct: 82  SVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLE 141

Query: 229 PSYTGIDD-----EDIEEEFKKLEQEVECERPKPTVSKTGVNEPAASESAES 275
            ++  +DD     E+ E E  ++  E+         SK     P        
Sbjct: 142 DTFESMDDQEEMEEEAEMEIDRILFEITAGALGKAPSKVTDALPEPEPPGAM 193

>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A Length = 179

 Score = 40.1 bits (93), Expect = 3e-04
 Identities = 26/134 (19%), Positives = 65/134 (48%), Gaps = 2/134 (1%)

Query: 111 TVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVE 170
            +  +  Q+  I R  E  ++S   +   G K V +  AK++  ++++  K  +    + 
Sbjct: 22  EMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMN 81

Query: 171 EVLSLIENAESTKKVSEAIQIGAQAIKK--NKISVEELQLCLEELEESIDLQKQAEKVIV 228
            VL  ++N  +  +V+ ++Q   + +K   + + + E+Q  + EL + +      E+++ 
Sbjct: 82  SVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLE 141

Query: 229 PSYTGIDDEDIEEE 242
            ++  +DD++  EE
Sbjct: 142 DTFESMDDQEEMEE 155

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	315
4abm_A	79	Charged multivesicular BODY protein 4B; cell cycle	99.46
2gd5_A	179	Charged multivesicular BODY protein 3; CHMP3, ESCR	99.38
3um3_B	104	Charged multivesicular BODY protein 4B; alpha-heli	99.27
3frt_A	218	Charged multivesicular BODY protein 3; ESCRT, ESCR	98.8
2luh_B	59	Vacuolar protein-sorting-associated protein 60; VT	98.65
3htu_B	39	Vacuolar protein-sorting-associated protein 20; ES	97.48
2lxm_B	57	Charged multivesicular BODY protein 5; MIT, protei	97.44
2gd5_A	179	Charged multivesicular BODY protein 3; CHMP3, ESCR	87.43
3uly_B	69	Charged multivesicular BODY protein 5; beta-hairpi	82.77

>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}

Probab=99.46  E-value=5.4e-13  Score=101.00  Aligned_cols=76  Identities=20%  Similarity=0.139  Sum_probs=72.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 021226          101 LDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIE  177 (315)
Q Consensus       101 ~D~~I~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe~~l~~Ie  177 (315)
                      ...+|++|+.++++|.++...|+.+|+.....||.++ .++|.+|+.+||+||++|++|+++.++++|||+++..||
T Consensus         4 ~~~AI~~Lr~~~d~L~kkq~~L~~~i~~e~~~Ak~~~-~knK~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~~iE   79 (79)
T 4abm_A            4 EQEAIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHG-TKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALE   79 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4679999999999999999999999999999999999 677999999999999999999999999999999999885

>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A

Probab=99.38  E-value=3.4e-13  Score=117.54  Aligned_cols=148  Identities=18%  Similarity=0.225  Sum_probs=113.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH----HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 021226          100 SLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKT----VALRHAKQLKLTKESREKCTSLLNRVEEVLSL  175 (315)
Q Consensus       100 e~D~~I~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~~K~----~Al~~Lr~KK~~ek~L~~~~~~l~nLe~~l~~  175 (315)
                      ........|+.+...|.+++..|+.+-.++....+.+.+.|++.    .|+.++|.||.    ..++.....+|+.+-.+
T Consensus        11 ~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~rk~----~~~l~~~~a~l~~v~~~   86 (179)
T 2gd5_A           11 LVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKA----VSKLYASKAHMNSVLMG   86 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence            46778999999999999999999999999998899999999877    68888888875    56666788888999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-c-CCChHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC-CHHHHHHHHHHHHHHHh
Q 021226          176 IENAESTKKVSEAIQIGAQAIKK-N-KISVEELQLCLEELEESIDLQKQAEKVIVPSYTGI-DDEDIEEEFKKLEQEVE  251 (315)
Q Consensus       176 Ie~a~~n~~v~~al~~g~~aLK~-~-~i~~e~Ve~~mddi~E~~~~~~EI~~~L~~~~~~~-De~ELe~EL~~Le~E~~  251 (315)
                      ++.+.++..|..+|+.|+++|+. + .+++++|..+|+++.++++..++|+++|+..+++. |+++.++|.+++...+.
T Consensus        87 lqt~~~~~~v~~am~~~~~~M~~~n~~m~l~~i~~~M~e~~~e~~~~~~~~E~m~d~~~~~~~~~~~eee~d~~v~kVl  165 (179)
T 2gd5_A           87 MKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRIL  165 (179)
T ss_dssp             HHHHHHHHHHTSSCCCCSHHHHTTTSSTTSSSCCHHHHHHHHHHHHHTSCC-------------------CTTHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHHHH
Confidence            99999999999999999999999 4 77999999999999999999999999998766532 33344444444444433

>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens}

Probab=99.27  E-value=2e-11  Score=96.87  Aligned_cols=54  Identities=15%  Similarity=0.371  Sum_probs=49.2

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHhCCCC---CCCCHHHHHHHHHHHHHHHhhc
Q 021226          200 KISVEELQLCLEELEESIDLQKQAEKVIVPSY---TGIDDEDIEEEFKKLEQEVECE  253 (315)
Q Consensus       200 ~i~~e~Ve~~mddi~E~~~~~~EI~~~L~~~~---~~~De~ELe~EL~~Le~E~~~e  253 (315)
                      +|++|+|+++||+++|++++++||+++|++++   .++|++||++||++|+.+...+
T Consensus         2 ~m~idkVe~lmDei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e~l~~   58 (104)
T 3um3_B            2 NMDIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQEELDK   58 (104)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999865   5789999999999999886544

>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}

Probab=98.80  E-value=1.6e-08  Score=90.47  Aligned_cols=148  Identities=18%  Similarity=0.255  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 021226          106 LHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKV  185 (315)
Q Consensus       106 ~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe~~l~~Ie~a~~n~~v  185 (315)
                      -.|+.+...|.+++..|+.+=.+....+|.+.+.|++..|+.|-|.=-..-+...+.+..-.+|..|-.++..+.++..|
T Consensus        17 r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~sV~~rlqt~~s~~~v   96 (218)
T 3frt_A           17 LKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRV   96 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46778888888888888888888888899999999988776666665556666777788888899999999999999999


Q ss_pred             HHHHHHHHHHHHh-c-CCChHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC-----CCHHHHHHHHHHHHHHHhhc
Q 021226          186 SEAIQIGAQAIKK-N-KISVEELQLCLEELEESIDLQKQAEKVIVPSYTG-----IDDEDIEEEFKKLEQEVECE  253 (315)
Q Consensus       186 ~~al~~g~~aLK~-~-~i~~e~Ve~~mddi~E~~~~~~EI~~~L~~~~~~-----~De~ELe~EL~~Le~E~~~e  253 (315)
                      ..+|..++++|+. + .+++..|..+|+++..++...+=+++++...+++     .+++|.++|.++...|....
T Consensus        97 ~~sM~~st~~M~~~n~~m~l~~i~~tM~efekE~~k~~i~eEmm~Da~d~~~~~~~~eee~d~~v~kVldEi~~~  171 (218)
T 3frt_A           97 AGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAG  171 (218)
T ss_dssp             --CCCCCHHHHHHHHHSTTSHHHHHHHHHHHHHHHHHSCC----------------CTTSTTTHHHHHHHTC---
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHhHh
Confidence            9999999999999 4 7899999999999999999877777777543331     23556666667666665543

>2luh_B Vacuolar protein-sorting-associated protein 60; VTA1, VPS60, ESCRT, MVB, novel MIT recognition mode, protein transport, endocytosis; NMR {Saccharomyces cerevisiae}

Probab=98.65  E-value=3.4e-09  Score=74.60  Aligned_cols=50  Identities=24%  Similarity=0.411  Sum_probs=44.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-----CCCHHHHHHHHHHHHHHH
Q 021226          201 ISVEELQLCLEELEESIDLQKQAEKVIVPSYT-----GIDDEDIEEEFKKLEQEV  250 (315)
Q Consensus       201 i~~e~Ve~~mddi~E~~~~~~EI~~~L~~~~~-----~~De~ELe~EL~~Le~E~  250 (315)
                      |++++|++++|+|.+.++..+||+++|+++|.     ++|++||++||++|..|.
T Consensus         1 inIDkIedlqDem~Dl~e~~nEIQE~L~rsy~~pe~DdiDE~eL~aELdaL~de~   55 (59)
T 2luh_B            1 INIDKLQDMQDEMLDLIEQGDELQEVLAMNNNSGELDDISDAELDAELDALAQED   55 (59)
T ss_dssp             CHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHTTCCGGGTTHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccCCHHHHHHHHHHhhccc
Confidence            57899999999999999999999999987533     589999999999998874

>3htu_B Vacuolar protein-sorting-associated protein 20; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}

Probab=97.48  E-value=0.00017  Score=46.77  Aligned_cols=36  Identities=25%  Similarity=0.283  Sum_probs=31.3

Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021226           96 SSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRK  131 (315)
Q Consensus        96 ~~ITe~D~~I~~Lk~~~~~L~~qi~~Le~~i~~~~~  131 (315)
                      +.||+.|++|++||.++++|.++...++..++...+
T Consensus         2 skiT~qDrAIL~LK~QRDkL~qyqkri~~~~~rE~e   37 (39)
T 3htu_B            2 SRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERA   37 (39)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             CcccHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence            589999999999999999999999999988876543

>2lxm_B Charged multivesicular BODY protein 5; MIT, protein transport; NMR {Homo sapiens}

Probab=97.44  E-value=7.9e-05  Score=52.18  Aligned_cols=37  Identities=22%  Similarity=0.483  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHhCCCCC--CCCHHHHHHHHHHHHHHHhhc
Q 021226          217 IDLQKQAEKVIVPSYT--GIDDEDIEEEFKKLEQEVECE  253 (315)
Q Consensus       217 ~~~~~EI~~~L~~~~~--~~De~ELe~EL~~Le~E~~~e  253 (315)
                      |+..+||+++|++++.  ++||+||++||++|++|...+
T Consensus         1 ~e~a~EIqealsr~~g~~diDEdEL~aELe~LeqE~~~~   39 (57)
T 2lxm_B            1 MEDANEINEALSRSYGTPELDEDDLEAELDALGDELLAD   39 (57)
T ss_dssp             ---------------CCCCCCHHHHHHHHHHHHHHHHHC
T ss_pred             CchHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHhhc
Confidence            5678999999988543  799999999999999887543

>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A

Probab=87.43  E-value=0.65  Score=39.53  Aligned_cols=139  Identities=15%  Similarity=0.145  Sum_probs=57.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 021226          101 LDYDVLHLIWTVEKLQLQLDIIDRHYEMS---------RKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEE  171 (315)
Q Consensus       101 ~D~~I~~Lk~~~~~L~~qi~~Le~~i~~~---------~~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe~  171 (315)
                      ...++-+|...+.+|+++...+..+|..+         +-.|+.+++..+  .       ...+-..-.++.+.-..|++
T Consensus        19 L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~rk--~-------~~~l~~~~a~l~~v~~~lqt   89 (179)
T 2gd5_A           19 IRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRK--A-------VSKLYASKAHMNSVLMGMKN   89 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--H-------HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--H-------HHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555555555555554322         224444444331  1       22222244444444455555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCCCHHHHHHHHHHHHH
Q 021226          172 VLSLIENAESTKKVSEAIQIGAQAIKKNKI--SVEELQLCLEELEESIDLQKQAEKVIVPS-YTGIDDEDIEEEFKKLEQ  248 (315)
Q Consensus       172 ~l~~Ie~a~~n~~v~~al~~g~~aLK~~~i--~~e~Ve~~mddi~E~~~~~~EI~~~L~~~-~~~~De~ELe~EL~~Le~  248 (315)
                      +......+..=..+..+|+..++.++--+|  ..+++++-++.+   -..++-+++++... ..+.+++|.++|+++...
T Consensus        90 ~~~~~~v~~am~~~~~~M~~~n~~m~l~~i~~~M~e~~~e~~~~---~~~~E~m~d~~~~~~~~~~~eee~d~~v~kVl~  166 (179)
T 2gd5_A           90 QLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKA---GIIEEMLEDTFESMDDQEEMEEEAEMEIDRILF  166 (179)
T ss_dssp             HHHHHHHTSSCCCCSHHHHTTTSSTTSSSCCHHHHHHHHHHHHH---TSCC-------------------CTTHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhcccCCCcHHHHHHHHHHHHH
Confidence            555555555555556666666666654333  344444444443   11122223333321 113345556666666555


Q ss_pred             HHh
Q 021226          249 EVE  251 (315)
Q Consensus       249 E~~  251 (315)
                      |..
T Consensus       167 E~~  169 (179)
T 2gd5_A          167 EIT  169 (179)
T ss_dssp             CC-
T ss_pred             Hhh
Confidence            544

>3uly_B Charged multivesicular BODY protein 5; beta-hairpin, ESCRT-III, CHMPS, membrane protein-transport P complex, BROX; 2.60A {Homo sapiens} PDB: 3um1_B

Probab=82.77  E-value=0.78  Score=33.08  Aligned_cols=21  Identities=29%  Similarity=0.616  Sum_probs=18.3

Q ss_pred             CCCHHHHHHHHHHHHHHHhhc
Q 021226          233 GIDDEDIEEEFKKLEQEVECE  253 (315)
Q Consensus       233 ~~De~ELe~EL~~Le~E~~~e  253 (315)
                      ++||+||++||++|..|+..+
T Consensus         7 diDE~eL~aELdaL~~e~~~~   27 (69)
T 3uly_B            7 ELDEDDLEAELDALGDELLAD   27 (69)
T ss_pred             CCCHHHHHHHHHHHHHHHhcc
Confidence            699999999999999887543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00